Nucleic acid and amino acid sequences relating to Acinetobacter baumannii for diagnostics and therapeutics

BACKGROUND OF THE INVENTION

The genus Acinetobacter is divided into at least 21 species by 16S ribosomal sequence analysis (Ibrahim, A., et al, 1997, Int J Syst Bacteriol. 47:837-841). They are gram-negative, oxidase-negative, non-motile, nitrate-negative, nonfermentative rods. The closest related lineage to Acinetobacter is the Moraxella genus. The glucose-oxidizing, nonhemolytic

Acinetobacter baumannii

(

A. baumannii

, spelling variants

A. baumanii

and

A. baumanni

), formerly known as

Acinetobacter calcoaceticus

var.

anitratus

, is the most frequently isolated species in this genus. This organism is commonly found in the environment as well as in hospitals. (Alexander Von Graevenitz, Acinetobacter, Alcaligenes, Moraxella, and Other Nonfermentative Gram-Negative Bacteria Chap. 41, Manual of Clinical Microbiology, Sixth Edition, Editor, Patrick R. Murry, ASM Press, Washington D.C., 1995)

A. baumannii

has only recently been recognized as a nosocomial pathogen. Invasive techniques such as surgery, and pulmonary ventilation combined with immunocompromized patients, have lead to the development and increased importance of the Acinetobacter genus as nosocomial pathogens (Towner, K., et al, 1997, Med Microbiol. 46: 721-746).

A. baumannii

has been associated with bacteremia, septicemia, pneumonia, meningitis, and infections of burns, urinary tract and surgical wounds. Often these diseases are nosocomial in origin. The ability of

A. baumannii

to survive on dry surfaces for long periods of time has contributed to outbreaks in hospitals. These outbreaks have been traced to reusable pressure transducers, room humidifiers, mattresses, pillows, and components of ventilation equipment (Constanze, W., et al, 1997, J Clin Microbiol. 35: 1394-1397). Outbreaks have also been associated with respiratory therapy equipment, intravascular access devices, and the hands of care-givers (Marques, M., et al, 1997, J Hosp Infect. 37:125-135). The mortality rate of nosocomial infections by

A. baumannii

can be quite high. The mortality rate of meningitis caused by

A. baumannii

is 20% to 27%, and bacteremia mortality ranges from 19% to 44% (Jimenez-Mejias, M., et al, 1997, Clin Infect Dis. 24: 932-935).

Resistance to antibiotics by the genus Acinetobacter has increased over time, with

A. baumannii

usually being the most resistant.

A. baumannii

is becoming resistant to many compounds that it was previously susceptible to, such as floroquinolones, aminoglycosides, ceftazidime, ticarcillin, and imipenem (Duval, J., et al, 1994, J Clin Microbiol 32: 2677-2681). In one study, at least 82% of the

A. baumannii

isolates were resistant to piperacillin, gentamicin, amikacin, netrilaicin, ceftazidime, cefotaxime, and norfloxacin (Garcia, D., et al, 1996, J Hosp Infect. 34:139-144). Resistance to ciprofloxacin in

A. baumannii

isolated from ICU patients, has increased from 4% in 1986 to 34% in 1993. Acinetobacter clinical isolates may be resistant to any of the therapeutically relevant antibiotics, and resistance is influenced by selection pressure of the preferred antibiotic (Towner, K., et al, 1997, Med Microbiol. 46: 721-746).

The Acinetobacter genus, with

A. baumannii

playing the lead role, is becoming increasingly important pathogens. Thirty years ago, the Acinetobacter genus was considered environmental and non-pathogenic. Currently, they are responsible for 1-2% of all nosocomial infections. They infect the very ill and most clinical isolates are multidrug resistant. Furthermore, they are capable of increasing hospitalization and causing epidemics (Towner, K., et al, 1997, Med Microbiol. 46: 721-746).

SUMMARY OF THE INVENTION

The present invention fulfills the need for diagnostic tools and therapeutics by providing bacterial-specific compositions and methods for detecting Acinetobacter species including

A. baumannii

, as well as compositions and methods useful for treating and preventing Acinetobacter infection, in particular,

A. baumannii

infection, in vertebrates including mammals.

The present invention encompasses isolated nucleic acids and polypeptides derived from

A. baumannii

that are useful as reagents for diagnosis of bacterial disease, components of effective antibacterial vaccines, and/or as targets for antibacterial drugs including anti-

A. baumannii

drugs. They can also be used to detect the presence of

A. baumannii

and other Acinetobacter species in a sample; and in screening compounds for the ability to interfere with the

A. baumannii

life cycle or to inhibit

A. baumannii

infection. They also have use as biocontrol agents for plants.

In one aspect, the invention features compositions of nucleic acids corresponding to entire coding sequences of

A. baumannii

proteins, including surface or secreted proteins or parts thereof, nucleic acids capable of binding mRNA from

A. baumannii

proteins to block protein translation, and methods for producing

A. baumannii

proteins or parts thereof using peptide synthesis and recombinant DNA techniques. This invention also features antibodies and nucleic acids useful as probes to detect

A. baumannii

infection. In addition, vaccine compositions and methods for the protection or treatment of infection by

A. baumannii

are within the scope of this invention.

The nucleotide sequences provided in SEQ ID NO:1-SEQ ID NO:4126, a fragment thereof, or a nucleotide sequence at least about 99.5% identical to a sequence contained within SEQ ID NO:1-SEQ ID NO:4126 may be “provided” in a variety of medias to facilitate use thereof. As used herein, “provided” refers to a manufacture, other than an isolated nucleic acid molecule, which contains a nucleotide sequence of the present invention, i.e., the nucleotide sequence provided in SEQ ID NO:1-SEQ ID NO:4126, a fragment thereof, or a nucleotide sequence at least about 99.5% identical to a sequence contained within SEQ ID NO:1-SEQ ID NO:4126. Uses for and methods for providing nucleotide sequences in a variety of media is well known in the art (see e.g., EPO Publication No. EP 0 756 006).

In one application of this embodiment, a nucleotide sequence of the present invention can be recorded on computer readable media. As used herein, “computer readable media” refers to any media which can be read and accessed directly by a computer. Such media include, but are not limited to: magnetic storage media, such as floppy discs, hard disc storage media, and magnetic tape; optical storage media such as CD-ROM; electrical storage media such as RAM and ROM; and hybrids of these categories such as magnetic/optical storage media. A person skilled in the art can readily appreciate how any of the presently known computer readable media can be used to create a manufacture comprising computer readable media having recorded thereon a nucleotide sequence of the present invention.

As used herein, “recorded” refers to a process for storing information on computer readable media. A person skilled in the art can readily adopt any of the presently known methods for recording information on computer readable media to generate manufactures comprising the nucleotide sequence information of the present invention.

A variety of data storage structures are available to a person skilled in the art for creating a computer readable media having recorded thereon a nucleotide sequence of the present invention. The choice of the data storage structure will generally be based on the means chosen to access the stored information. In addition, a variety of data processor programs and formats can be used to store the nucleotide sequence information of the present invention on computer readable media. The sequence information can be represented in a word processing text file, formatted in commercially-available software such as WordPerfect and Microsoft Word, or represented in the form of an ASCII file, stored in a database application, such as DB2, Sybase, Oracle, or the like. A person skilled in the art can readily adapt any number of data processor structuring formats (e.g. text file or database) in order to obtain computer readable media having recorded thereon the nucleotide sequence information of the present invention.

By providing the nucleotide sequence of SEQ ID NO:1-SEQ ID NO:4126, a fragment thereof, or a nucleotide sequence at least about 99.5% identical to SEQ ID NO:1-SEQ ID NO:4126 in computer readable form, a person skilled in the art can routinely access the coding sequence information for a variety of purposes. Computer software is publicly available which allows a person skilled in the art to access sequence information provided in a computer readable media. Examples of such computer software include programs of the “Staden Package”, “DNA Star”, “MacVector”, GCG “Wisconsin Package” (Genetics Computer Group, Madison, Wis.) and “NCBI Toolbox” (National Center For Biotechnology Information). Suitable programs are described, for example, in Martin J. Bishop, ed.,

Guide to Human Genome Computing

, 2d Edition, Academic Press, San Diego, Calif. (1998); and Leonard F. Peruski, Jr., and Anne Harwood Peruski,

The Internet and the New Biology: Tools for Genomic and Molecular Research

, American Society for Microbiology, Washington, D.C. (1997).

Computer algorithms enable the identification of

A. baumannii

open reading frames (ORFs) within SEQ ID NO:1-SEQ ID NO:4126 which contain homology to ORFs or proteins from other organisms. Examples of such similarity-search algorithms include the BLAST [Altschul et al., J. Mol. Biol. 215:403-410 (1990)] and Smith-Waterman [Smith and Waterman (1981) Advances in Applied Mathematics, 2:482-489] search algorithms. Suitable search algorithms are described, for example, in Martin J. Bishop, ed.,

Guide to Human Genome Computing

, 2d Edition, Academic Press, San Diego, Calif. (1998); and Leonard F. Peruski, Jr., and Anne Harwood Peruski,

The Internet and the New Biology: Tools for Genomic and Molecular Research

, American Society for Microbiology, Washinigton, D.C. (1997). Such algorithms are utilized on computer systems as exemplified below. The ORFs so identified represent protein encoding fragments within the

A. baumannii

genome and are useful in producing commercially important proteins such as enzymes used in fermentation reactions and in the production of commercially useful metabolites.

The present invention further provides systems, particularly computer-based systems, which contain the sequence information described herein. Such systems are designed to identify commercially important fragments of the

A. baumannii

genome. As used herein, “a computer-based system” refers to the hardwaremeans, software means, and data storage means used to analyze the nucleotide sequence information of the present invention. The minimum hardware means of the computer-based systems of the present invention comprises a central processing unit (CPU), input means, output means, and data storage means. A person skilled in the art can readily appreciate that any one of the currently available computer-based systems is suitable for use in the present invention. The computer-based systems of the present invention comprise a data storage means having stored therein a nucleotide sequence of the present invention and the necessary hardware means and software means for supporting and implementing a search means. As used herein, “data storage means” refers to memory which can store nucleotide sequence information of the present invention, or a memory access means which can access manufactures having recorded thereon the nucleotide sequence information of the present invention.

As used herein, “search means” refers to one or more programs which are implemented on the computer-based system to compare a target sequence or target structural motif with the sequence information stored within the data storage means. Search means are used to identify fragments or regions of the

A. baumannii

genome which are similar to, or “match”, a particular target sequence or target motif. A variety of known algorithms are known in the art and have been disclosed publicly, and a variety of commercially available software for conducting homology-based similarity searches are available and can be used in the computer-based systems of the present invention. Examples of such software includes, but is not limited to, FASTA (GCG Wisconsin Package), Bic_SW (Compugen Bioccelerator), BLASTN2, BLASTP2, BLASTX2 (NCBI) and Motifs (GCG). Suitable software programs are described, for example, in Martin J. Bishop, ed.,

Guide to Human Genome Computing

, 2d Edition, Academic Press, San Diego, Calif. (1998); and Leonard F. Peruski, Jr., and Anne Harwood Peruski,

The Internet and the Netis Biology: Tools for Genomic and Molecular Research

, American Society for Microbiology, Washington, D.C. (1997). A person skilled in the art can readily recognize that any one of the available algorithms or implementing software packages for conducting homology searches can be adapted for use in the present computer-based systems.

As used herein, a “target sequence” can be any DNA or amino acid sequence of six or more nucleotides or two or more amino acids. A person skilled in the art can readily recognize that the longer a target sequence is, the less likely a target sequence will be present as a random occurrence in the database. The most preferred sequence length of a target sequence is from about 10 to 100 amino acids or from about 30 to 300 nucleotide residues. However, it is well recognized that many genes are longer than 500 amino acids, or 1.5 kb in length, and that commercially important fragments of the

A. baumannii

genome, such as sequence fragments involved in gene expression and protein processing, will often be shorter than 30 nucleotides.

As used herein, “a target structural motif,” or “target motif,” refers to any rationally selected sequence or combination of sequences in which the sequence(s) are chosen based on a specific functional domain or three-dimensional configuration which is formed upon the folding of the target polypeptide. There are a variety of target motifs known in the art. Protein target motifs include, but are not limited to, enzymatic active sites, membrane-spanning regions, and signal sequences. Nucleic acid target motifs include, but are not limited to, promoter sequences, hairpin structures and inducible expression elements (protein binding sequences).

A variety of structural formats for the input and output means can be used to input and output the information in the computer-based systems of the present invention. A preferred format for an output means ranks fragments of the

A. baumannii

genome possessing varying degrees of homology to the target sequence or target motif. Such presentation provides a person skilled in the art with a ranking of sequences which contain various amounts of the target sequence or target motif and identifies the degree of homology contained in the identified fragment.

A variety of comparing means can be used to compare a target sequence or target motif with the data storage means to identify sequence fragments of the

A. baumannii

genome. In the present examples, implementing software which implement the BLASTP2 and bic_SW algorithms (Altschul et al., J Mol. Biol. 215:403-410 (1990); Compugen Biocellerator) was used to identify open reading frames within the

A. baumannii

genome. A person skilled in the art can readily recognize that any one of the publicly available homology search programs can be used as the search means for the computer-based systems of the present invention. Suitable programs are described, for example, in Martin J. Bishop, ed.,

Guide to Human Genome Computing

, 2d Edition, Academic Press, San Diego, Calif. (1998); and Leonard F. Peruski, Jr., and Anne Harwood Peruski,

The Internet and the New Biology: Tools for Genomic and Molecular Research

, American Society for Microbiology, Washington, D.C. (1997).

The invention features

A. baumannii

polypeptides, preferably a substantially pure preparation of an

A. baumannii

polypeptide, or a recombinant

A. baumannii

polypeptide. In preferred embodiments: the polypeptide has biological activity; the polypeptide has an amino acid sequence at least about 60%, 70%, 80%, 90%, 95%, 98%, or 99% identical to an amino acid sequence of the invention contained in the Sequence Listing, preferably it has about 65% sequence identity with an amino acid sequence of the invention contained in the Sequence Listing, and most preferably it has about 92% to about 99% sequence identity with an amino acid sequence of the invention contained in the Sequence Listing; the polypeptide has an amino acid sequence essentially the same as an amino acid sequence of the invention contained in the Sequence Listing; the polypeptide is at least about 5, 10, 20, 50, 100, or 150 amino acid residues in length; the polypeptide includes at least about 5, preferably at least about 10, more preferably at least about 20, still more preferably at least about 50, 100, or 150 contiguous amino acid residues of the invention contained in the Sequence Listing. In yet another preferred embodiment, the amino acid sequence which differs in sequence identity by about 7% to about 8% from the

A. baumannii

amino acid sequences of the invention contained in the Sequence Listing is also encompassed by the invention.

In preferred embodiments: the

A. baumannii

polypeptide is encoded by a nucleic acid of the invention contained in the Sequence Listing, or by a nucleic acid having at least about 60%, 70%, 80%, 90%, 95%, 98%, or 99% homology with a nucleic acid of the invention contained in the Sequence Listing.

In a preferred embodiment, the subject

A. baumannii

polypeptide differs in amino acid sequence at about 1, 2, 3, 5, 10 or more residues from a sequence of the invention contained in the Sequence Listing. The differences, however, are such that the

A. baumannii

polypeptide exhibits an

A. baumannii

biological activity, e.g., the

A. baumannii

polypeptide retains a biological activity of a naturally occurring

A. baumannii

enzyme.

In preferred embodiments, the polypeptide includes all or a fragment of an amino acid sequence of the invention contained in the Sequence Listing; fused, in reading frame, to additional amino acid residues, preferably to residues encoded by genomic DNA 5′ or 3′ to the genomic DNA which encodes a sequence of the invention contained in the Sequence Listing.

In yet other preferred embodiments, the

A. baumannii

polypeptide is a recombinant fusion protein having a first

A. baumannii

polypeptide portion and a second polypeptide portion, e.g., a second polypeptide portion having an amino acid sequence unrelated to

A. baumannii

. The second polypeptide portion can be, e.g., any of glutathione-S-transferase, a DNA binding domain, or a polymerase activating domain. In preferred embodiment the fusion protein can be used in a two-hybrid assay.

Polypeptides of the invention include those which arise as a result of alternative transcription events, alternative RNA splicing events, and alternative translational and postranslational events.

In a preferred embodiment, the encoded

A. baumannii

polypeptide differs (e.g., by amino acid substitution, addition or deletion of at least one amino acid residue) in amino acid sequence at about 1, 2, 3, 5, 10 or more residues, from a sequence of the invention contained in the Sequence Listing. The differences, however, are such that: the

A. baumannii

encoded polypeptide exhibits an

A. baumannii

biological activity, e.g., the encoded

A. baumannii

enzyme retains a biological activity of a naturally occurring

A. baumannii.

In preferred embodiments, the encoded polypeptide includes all or a fragment of an amino acid sequence of the invention contained in the Sequence Listing; fused, in reading frame, to additional amino acid residues, preferably to residues encoded by genomic DNA 5′ or 3′ to the genomic DNA which encodes a sequence of the invention contained in the Sequence Listing.

The

A. baumannii

strain, 15839, from which genomic sequences have been sequenced, has been deposited on Jan. 9, 1998, in the American Type Culture Collection and assigned the ATCC designation #202080.

Included in the invention are: allelic variations; natural mutants; induced mutants; proteins encoded by DNA that hybridize under high or low stringency conditions to a nucleic acid which encodes a polypeptide of the invention contained in the Sequence Listing (for definitions of high and low stringency see Current Protocols in Molecular Biology, John Wiley & Sons, New York, 1989, 6.3.1-6.3.6, hereby incorporated by reference); and, polypeptides specifically bound by antisera to

A. baumannii

polypeptides, especially by antisera to an active site or binding domain of

A. baumannii

polypeptide. The invention also includes fragments, preferably biologically active fragments. These and other polypeptides are also referred to herein as

A. baumannii

polypeptide analogs or variants.

The invention further provides nucleic acids, e.g., RNA or DNA, encoding a polypeptide of the invention. This includes double stranded nucleic acids as well as coding and antisense single strands.

In preferred embodiments, the subject

A. baumannii

nucleic acid will include a transcriptional regulatory sequence, e.g., at least one of a transcriptional promoter or transcriptional enhancer sequence, operably linked to the

A. baumannii

gene sequence, e.g., to render the

A. baumannii

gene sequence suitable for expression in a recombinant host cell.

In yet a further preferred embodiment, the nucleic acid which encodes an

A. baumannii

polypeptide of the invention, hybridizes under stringent conditions to a nucleic acid probe corresponding to at least about 8 consecutive nucleotides of the invention contained in the Sequence Listing; more preferably to at least about 12 consecutive nucleotides of the invention contained in the Sequence Listing; still more preferably to at least about 20 consecutive nucleotides of the invention contained in the Sequence Listing; most preferably to at least about 40 consecutive nucleotides of the invention contained in the Sequence Listing.

In another aspect, the invention provides a substantially pure nucleic acid having a nucleotide sequence which encodes an

A. baumannii

polypeptide. In preferred embodiments: the encoded polypeptide has biological activity; the encoded polypeptide has an amino acid sequence at least about 60%, 70%, 80%, 90%, 95%, 98% or 99% homologous to an amino acid sequence of the invention contained in the Sequence Listing; the encoded polypeptide has an amino acid sequence essentially the same as an amino acid sequence of the invention contained in the Sequence Listing; the encoded polypeptide is at least about 5, 10, 20, 50, 100, or 150 amino acids in length; the encoded polypeptide comprises at least about 5, preferably at least about 10, more preferably at least about 20, still more preferably at least about 50, 100, or 150 contiguous amino acids of the invention contained in the Sequence Listing.

In another aspect, the invention encompasses: a vector including a nucleic acid which encodes an

A. baumannii

polypeptide or an

A. baumannii

polypeptide variant as described herein; a host cell transfected with the vector; and a method of producing a recombinant

A. baumannii

polypeptide or

A. baumannii

polypeptide variant; including culturing the cell, e.g., in a cell culture medium, and isolating an

A. baumannii

or

A. baumannii

polypeptide variant, e.g., from the cell or from the cell culture medium.

One embodiment of the invention is directed to substantially isolated nucleic acids. Nucleic acids of the invention include sequences comprising at least about 8 nucleotides in length, more preferably at least about 12 nucleotides in length, even more preferably at least about 15-20 nucleotides in length, that correspond to a subsequence of any one of SEQ ID NO:1-SEQ ID NO:4126 or complements thereof. Alternatively, the nucleic acids comprise sequences contained within any ORF (open reading frame), including a complete protein-coding sequence, of which any of SEQ ID NO:1-SEQ ID NO:4126 forms a part. The invention encompasses sequence-conservative variants and function-conservative variants of these sequences. The nucleic acids may be DNA, RNA, DNA/RNA duplexes, protein-nucleic acid (PNA), or derivatives thereof

In another aspect, the invention features a purified recombinant nucleic acid having at least about 50%, 60%, 70%, 80%, 90%, 95%, 98%, or 99% homology with a sequence of the invention contained in the Sequence Listing.

The invention also encompasses recombinant DNA (including DNA cloning and expression vectors) comprising these

A. baumannii

-derived sequences; host cells comprising such DNA, including fungal, bacterial, yeast, plant, insect, and mammalian host cells; and methods for producing expression products comprising RNA and polypeptides encoded by the

A. baumannii

sequences. These methods are carried out by incubating a host cell comprising an

A. baumannii

-derived nucleic acid sequence under conditions in which the sequence is expressed. The host cell may be native or recombinant. The polypeptides can be obtained by (a) harvesting the incubated cells to produce a cell fraction and a medium fraction; and (b) recovering the

A. baumannii

polypeptide from the cell fraction, the medium fraction, or both. The polypeptides can also be made by in vitro translation.

In another aspect, the invention features nucleic acids capable of binding mRNA of

A. baumannii

. Such nucleic acid is capable of acting as antisense nucleic acid to control the translation of mRNA of

A. baumannii

. A further aspect features a nucleic acid which is capable of binding specifically to an

A. baumannii

nucleic acid. These nucleic acids are also referred to herein as complements and have utility as probes and as capture reagents.

In another aspect, the invention features an expression system comprising an open reading frame corresponding to

A. baumannii

nucleic acid. The nucleic acid further comprises a control sequence compatible with an intended host. The expression system is useful for making polypeptides corresponding to

A. baumannii

nucleic acid.

In another aspect, the invention encompasses: a vector including a nucleic acid which encodes an

A. baumannii

polypeptide or an

A. baumannii

polypeptide variant as described herein; a host cell transfected with the vector; and a method of producing a recombinant

A. baumannii

polypeptide or

A. baumannii

polypeptide variant; including culturing the cell, e.g., in a cell culture medium, and isolating the

A. baumannii

or

A. baumannii

polypeptide variant, e.g., from the cell or from the cell culture medium.

In yet another embodiment of the invention encompasses reagents for detecting bacterial infection, including

A. baumannii

infection, which comprise at least one

A. baumannii

-derived nucleic acid defined by any one of SEQ ID NO:1-SEQ ID NO:4126, or sequence-conservative or function-conservative variants thereof. Alternatively, the diagnostic reagents comprise nucleotide sequences that are contained within any open reading frames (ORFs), including preferably complete protein-coding sequences, contained within any of SEQ ID NO:1-SEQ ID NO:4196, or polypeptide sequences contained within any of SEQ ID NO:4127-SEQ ID NO:8252, or polypeptides of which any of the above sequences forms a part, or antibodies directed against any of the above peptide sequences or function-conservative variants and/or fragments thereof.

The invention further provides antibodies, preferably monoclonal antibodies, which specifically bind to the polypeptides of the invention. Methods are also provided for producing antibodies in a host animal. The methods of the invention comprise immunizing an animal with at least one

A. baumannii

-derived immunogenic component, wherein the immunogenic component comprises one or more of the polypeptides encoded by any one of SEQ ID NO:1-SEQ ID NO:4126 or sequence-conservative or function-conservative variants thereof; or polypeptides that are contained within any ORFs, including complete protein-coding sequences, of which any of SEQ ID NO:1-SEQ ID NO:4126 forms a part; or polypeptide sequences contained within any of SEQ ID NO:4127-SEQ ID NO:8252; or polypeptides of which any of SEQ ID NO:4127-SEQ ID NO:8252 forms a part. Host animals include any warm blooded animal, including without limitation mammals and birds. Such antibodies have utility as reagents for immunoassays to evaluate the abundance and distribution of

A. baumannii

-specific antigens.

In yet another aspect, the invention provides diagnostic methods for detecting

A. baumannii

antigenic components or anti-

A. baumannii

antibodies in a sample.

A. baumannii

antigenic components may be detected by known processes, including but not limited to detection by a process comprising: (i) contacting a sample suspected to contain a bacterial antigenic component with a bacterial-specific antibody, under conditions in which a stable antigen-antibody complex can form between the antibody and bacterial antigenic components in the sample; and (ii) detecting any antigen-antibody complex formed in step (i), wherein detection of an antigen-antibody complex indicates the presence of at least one bacterial antigenic component in the sample. In different embodiments of this method, the antibodies used are directed against a sequence encoded by any of SEQ ID NO:1-SEQ ID NO:4126 or sequence-conservative or function-conservative variants thereof, or against a polypeptide sequence contained in any of SEQ ID NO:4127-SEQ ID NO:8252 or function-conservative variants thereof.

In yet another aspect, the invention provides a method for detecting antibacterial-specific antibodies in a sample, which comprises: (i) contacting a sample suspected to contain antibacterial-specific antibodies with an

A. baumannii

antigenic component, under conditions in which a stable antigen-antibody complex can form between the

A. baumannii

antigenic component and antibacterial antibodies in the sample; and (ii) detecting any antigen-antibody complex formed in step (i), wherein detection of an antigen-antibody complex indicates the presence of antibacterial antibodies in the sample. In different embodiments of this method, the antigenic component is encoded by a sequence contained in any of SEQ ID NO:1-SEQ ID NO:4126 or sequence-conservative and function-conservative variants thereof, or is a polypeptide sequence contained in any of SEQ ID NO:4127-SEQ ID NO:8252 or function-conservative variants thereof.

In another aspect, the invention features a method of generating vaccines for immunizing an individual against

A. baumannii

. The method includes: immunizing a subject with an

A. baumannii

polypeptide, e.g., a surface or secreted polypeptide, or a combination of such peptides or active portion(s) thereof, and a pharmaceutically acceptable carrier. Such vaccines have therapeutic and prophylactic utilities.

In another aspect, the invention features a method of evaluating a compound, e.g., a polypeptide, e.g., a fragment of a host cell polypeptide, for the ability to bind an

A. baumannii

polypeptide. The method includes contacting the compound to be evaluated with an

A. baumannii

polypeptide and determining if the compound binds or otherwise interacts with the

A. baumannii

polypeptide. Compounds which bind or otherwise interact with

A. baumannii

polypeptides are candidates as modulators, including activators and inhibitors, of the bacterial life cycle. These assays can be performed in vitro or in vivo.

In another aspect, the invention features a method of evaluating a compound, e.g., a polypeptide, e.g., a fragment of a host cell polypeptide, for the ability to bind an

A. baumannii

nucleic acid, e.g., DNA or RNA. The method includes contacting the compound to be evaluated with an

A. baumannii

nucleic acid and determining if the compound binds or otherwise interacts with the

A. baumannii

nucleic acid. Compounds which bind

A. baumannii

are candidates as modultors, including activators and inhibitors, of the bacterial life cycle. These assays can be performed in vitro or in vivo.

A particularly preferred embodiment of the invention is directed to a method of screening test compounds for anti-bacterial activity, which method comprises: selecting as a target a bacterial specific sequence, which sequence is essential to the viability of a bacterial species; contacting a test compound with said target sequence; and selecting those test compounds which bind to said target sequence as potential anti-bacterial candidates. In one embodiment, the target sequence selected is specific to a single species, or even a single strain, such as, for example, the strain

A. baumannii

202080. In a second embodiment, the target sequence is common to at least two species of bacteria. In a third embodiment, the target sequence is common to a family of bacteria. The target sequence may be a nucleic acid sequence or a polypeptide sequence. Methods employing sequences common to more than one species of microorganism may be used to screen candidates for broad spectrum anti-bacterial activity.

The invention also provides methods for preventing or treating disease caused by certain bacteria, including

A. baumannii

, which are carried out by administering to an animal in need of such treatment, in particular a warm-blooded vertebrate, including but not limited to birds and mamunals, a compound that specifically inhibits or interferes with the function of a bacterial polypeptide or nucleic acid. In a particularly preferred embodiment, the mammal to be treated is human.

DETAILED DESCRIPTION OF THE INVENTION

The sequences of the present invention include the specific nucleic acid and amino acid sequences set forth in the Sequence Listing that forms a part of the present specification, and which are designated SEQ ID NO:1-SEQ ID NO:8252. Use of the terms “SEQ ID NO:1-SEQ ID NO:4126”, “SEQ ID NO:4127-SEQ ID NO:8252, “the sequences depicted in Table 2”, etc., is intended, for convenience, to refer to each individual SEQ ID NO individually, and is not intended to refer to the genus of these sequences unless such reference would be indicated. In other words, it is a shorthand for listing all of these sequences individually. The invention encompasses each sequence individually, as well as any combination thereof.

Definitions

“Nucleic acid” or “polynucleotide” as used herein refers to purine- and pyrimidine-containing polymers of any length, either polyribonucleotides or polydeoxyribonucleotides or mixed polyribo-polydeoxyribo nucleotides. This includes single- and double-stranded molecules, i.e., DNA-DNA, DNA-RNA and RNA-RNA hybrids, as well as “protein nucleic acids” (PNA) formed by conjugating bases to an amino acid backbone. This also includes nucleic acids containing modified bases.

A nucleic acid or polypeptide sequence that is “derived from” a designated sequence refers to a sequence that corresponds to a region of the designated sequence. For nucleic acid sequences, this encompasses sequences that are homologous or complementary to the sequence, as well as “sequence-conservative variants” and “function-conservative variants.” For polypeptide sequences, this encompasses “function-conservative variants.” Sequence-conservative variants are those in which a change of one or more nucleotides in a given codon position results in no alteration in the amino acid encoded at that position. Function-conservative variants are those in which a given amino acid residue in a polypeptide has been changed without altering the overall conformation and function of the native polypeptide, including, but not limited to, replacement of an amino acid with one having similar physico-chemical properties (such as, for example, acidic, basic, hydrophobic, and the like). “Function-conservative” variants also include any polypeptides that have the ability to elicit antibodies specific to a designated polypeptide.

An “

A. baumannii

-derived” nucleic acid or polypeptide sequence may or may not be present in other bacterial species, and may or may not be present in all

A. baumannii

strains. This term is intended to refer to the source from which the sequence was originally isolated. Thus, an

A. baumannii

-derived polypeptide, as used herein, may be used, e.g., as a target to screen for a broad spectrum antibacterial agent, to search for homologous proteins in other species of bacteria or in eukaryotic organisms such asbacteria humans, etc.

A purified or isolated polypeptide or a substantially pure preparation of a polypeptide are used interchangeably herein and, as used herein, mean a polypeptide that has been separated from other proteins, lipids, and nucleic acids with which it naturally occurs. Preferably, the polypeptide is also separated from substances, e.g., antibodies or gel matrix, e.g., polyacrylamide, which are used to purify it. Preferably, the polypeptide constitutes at least about 10, 20, 50 70, 80 or 95% dry weight of the purified preparation. Preferably, the preparation contains sufficient polypeptide to allow protein sequencing; at least about 1, 10, or preferably 100 mg of polypeptide.

A purified preparation of cells refers to, in the case of plant or animal cells, an in vitro preparation of cells and not an entire intact plant or animal. In the case of cultured cells or microbial cells, it consists of a preparation of at least about 10%, more preferably at least about 50%, of the subject cells.

A purified or isolated or a substantially pure nucleic acid, e.g., a substantially pure DNA, (are terms used interchangeably herein) is a nucleic acid which is one or both of the following: not immediately contiguous with both of the coding sequences with which it is immediately contiguous (i.e., one at the 5′ end and one at the 3′ end) in the naturally-occurring genome of the organism from which the nucleic acid is derived; or which is substantially free of a nucleic acid with which it occurs in the organism from which the nucleic acid is derived. The term includes, for example, a recombinant DNA which is incorporated into a vector, e.g., into an autonomously replicating plasmid or virus, or into the genomic DNA of a prokaryote or eukaryote, or which exists as a separate molecule (e.g., a cDNA or a genomic DNA fragment produced by PCR or restriction endonuclease treatment) independent of other DNA sequences. Substantially pure DNA also includes a recombinant DNA which is part of a hybrid gene encoding additional

A. baumannii

DNA sequence.

A “contig” as used herein is a nucleic acid representing a continuous stretch of genomic sequence of an organism.

An “open reading frame”, also referred to herein as ORF, is a region of nucleic acid which encodes a polypeptide. This region may represent a portion of a coding sequence or a total sequence and can be determined from a stop to stop codon or from a start to stop codon.

As used herein, a “coding sequence” is a nucleic acid which is transcribed into messenger RNA and/or translated into a polypeptide when placed under the control of appropriate regulatory sequences. The boundaries of the coding sequence are determined by a translation start codon at the five prime terminus and a translation stop code at the three prime terminus. A coding sequence can include but is not limited to messenger RNA, synthetic DNA, and recombinant nucleic acid sequences.

A “complement” of a nucleic acid as used herein refers to an anti-parallel or antisense sequence that participates in Watson-Crick base-pairing with the original sequence.

A “gene product” is a protein or structural RNA which is specifically encoded by a gene.

As used herein, the term “probe” refers to a nucleic acid, peptide or other chemical entity which specifically binds to a molecule of interest. Probes are often associated with or capable of associating with a label. A label is a chemical moiety capable of detection. Typical labels comprise dyes, radioisotopes, luminescent and chemiluminescent moieties, fluorophores, enzymes, precipitating agents, amplification sequences, and the like. Similarly, a nucleic acid, peptide or other chemical entity which specifically binds to a molecule of interest and immobilizes such molecule is referred herein as a “capture ligand”. Capture ligands are typically associated with or capable of associating with a support such as nitro-cellulose, glass, nylon membranes, beads, particles and the like. The specificity of hybridization is dependent on conditions such as the base pair composition of the nucleotides, and the temperature and salt concentration of the reaction. These conditions are readily discemable to one of ordinary skill in the art using routine experimentation.

“Homologous” refers to the sequence similarity or sequence identity between two polypeptides or between two nucleic acid molecules. When a position in both of the two compared sequences is occupied by the same base or amino acid monomer subunit, e.g., if a position in each of two DNA molecules is occupied by adenine, then the molecules are homologous at that position. The percent of homology between two sequences is a function of the number of matching or homologous positions shared by the two sequences divided by the number of positions compared ×100. For example, if 6 of 10 of the positions in two sequences are matched or homologous then the two sequences are 60% homologous. By way of example, the DNA sequences ATTGCC and TATGGC share 50% homology. Generally, a comparison is made when two sequences are aligned to give maximum homology.

Nucleic acids are hybridizable to each other when at least one strand of a nucleic acid can anneal to the other nucleic acid under defined stringency conditions. Stringency of hybridization is determined by: (a) the temperature at which hybridization and/or washing is performed; and (b) the ionic strength and polarity of the hybridization and washing solutions. Hybridization requires that the two nucleic acids contain complementary sequences; depending on the stringency of hybridization, however, mismatches may be tolerated. Typically, hybridization of two sequences at high stringency (such as, for example, in a solution of 0.5×SSC, at 65° C.) requires that the sequences be essentially completely homologous. Conditions of intermediate stringency (such as, for example, 2×SSC at 65° C.) and low stringency (such as, for example 2×SSC at 55° C.) require correspondingly less overall complementarity between the hybridizing sequences. (1×SSC is 0.15 M NaCl, 0.015 M Na citrate).

The terms peptides, proteins, and polypeptides are used interchangeably herein.

As used herein, the term “surface protein” refers to all surface accessible proteins, e.g. inner and outer membrane proteins, proteins adhering to the cell wall, and secreted proteins.

A polypeptide has

A. baumannii

biological activity if it has one, two or preferably more of the following properties: (1) if when expressed in the course of an

A. baumannii

infection, it can promote, or mediate the attachment of

A. baumannii

to a cell; (2) it has an enzymatic activity, structural or regulatory function characteristic of an

A. baumannii

protein; (3) the gene which encodes it can rescue a lethal mutation in an

A. baumannii

gene. A polypeptide has biological activity if it is an antagonist, agonist, or super-agonist of a polypeptide having one of the above-listed properties.

A biologically active fragment or analog is one having an in vivo or in vitro activity which is characteristic of the

A. baumannii

polypeptides of the invention contained in the Sequence Listing, or of other naturally occurring

A. baumannii

polypeptides, e.g., one or more of the biological activities described herein. Especially preferred are fragments which exist in vivo, e.g., fragments which arise from post transcriptional processing or which arise from translation of alternatively spliced RNA's. Fragments include those expressed in native or endogenous cells as well as those made in expression systems, e.g., in CHO (Chinese Hamster Ovary) cells. Because peptides such as

A. baumannii

polypeptides often exhibit a range of physiological properties and because such properties may be attributable to different portions of the molecule, a useful

A. baumannii

fragment or

A. baumannii

analog is one which exhibits a biological activity in any biological assay for

A. baumannii

activity. The fragment or analog possesses about 10%, preferably about 40%, more preferably about 60%, 70%, 80% or 90% or greater of the activity of

A. baumannii

, in any in vivo or in vitro assay.

Analogs can differ from naturally occurring

A. baumannii

polypeptides in amino acid sequence or in ways that do not involve sequence, or both. Non-sequence modifications include changes in acetylation, methylation, phosphorylation, carboxylation, or glycosylation. Preferred analogs include

A. baumannii

polypeptides (or biologically active fragments thereof) whose sequences differ from the wild-type sequence by one or more conservative amino acid substitutions or by one or more non-conservative amino acid substitutions, deletions, or insertions which do not substantially diminish the biological activity of the

A. baumannii

polypeptide. Conservative substitutions typically include the substitution of one amino acid for another with similar characteristics, e.g., substitutions within the following groups: valine, glycine; glycine, alanine; valine, isoleucine, leucine; aspartic acid, glutamic acid; asparagine, glutamine; serine, threonine; lysine, arginine; and phenylalanine, tyrosine. Other conservative substitutions can be made in view of the table below.

TABLE 1

CONSERVATIVE AMINO ACID REPLACEMENTS

For Amino Acid

Code

Replace with any of

Alanine

A

D-Ala, Gly, beta-Ala, L-Cys, D-Cys

Arginine

R

D-Arg, Lys, D-Lys, homo-Arg, D-homo-Arg,

Met, Ile, D-Met, D-Ile, Orn, D-Orn

Asparagine

N

D-Asn, Asp, D-Asp, Glu, D-Glu, Gln, D-Gln

Aspartic Acid

D

D-Asp, D-Asn, Asn, Glu, D-Glu, Gln, D-Gln

Cysteine

C

D-Cys, S-Me-Cys, Met, D-Met, Thr, D-Thr

Glutamine

Q

D-Gln, Asn, D-Asn, Glu, D-Glu, Asp, D-Asp

Glutamic Acid

E

D-Glu, D-Asp, Asp, Asn, D-Asn, Gln, D-Gln

Glycine

G

Ala, D-Ala, Pro, D-Pro, β-Ala, Acp

Isoleucine

I

D-Ile, Val, D-Val, Leu, D-Leu, Met,-D-Met

Leucine

L

D-Leu, Val, D-Val, Leu, D-Leu, Met, D-Met

Lysine

K

D-Lys, Arg, D-Arg, homo-Arg, D-homo-Arg,

Met, D-Met, Ile, D-Ile, Orn, D-Orn

Methionine

M

D-Met, S-Me-Cys, Ile, D-Ile, Leu, D-Leu,

Val, D-Val

Phenylalanine

F

D-Phe, Tyr, D-Thr, L-Dopa, His, D-His,

Trp, D-Trp, Trans-3,4, or 5-phenylproline,

cis-3,4, or 5-phenylproline

Proline

P

D-Pro, L-I-thioazolidine-4-carboxylic acid,

D-or L-1-oxazolidine-4-carboxylic acid

Serine

S

D-Ser, Thr, D-Thr, allo-Thr, Met, D-Met,

Met(O), D-Met(O), L-Cys, D-Cys

Threonine

T

D-Thr, Ser, D-Ser, allo-Thr, Met, D-Met,

Met(O), D-Met(O), Val, D-Val

Tyrosine

Y

D-Tyr, Phe, D-Phe, L-Dopa, His, D-His

Valine

V

D-Val, Leu, D-Leu, Ile, D-Ile, Met, D-Met

Other analogs within the invention are those with modifications which increase peptide stability; such analogs may contain, for example, one or more non-peptide bonds (which replace the peptide bonds) in the peptide sequence. Also included are: analogs that include residues other than naturally occurring L-amino acids, e.g., D-amino acids or non-naturally occurring or synthetic amino acids, e.g, β or γ amino acids; and cyclic analogs.

As used herein, the term “fragment”, as applied to an

A. baumannii

analog, will ordinarily be at least about 20 residues, more typically at least about 40 residues, preferably at least about 60 residues in length. Fragments of

A. baumannii

polypeptides can be generated by methods known to those skilled in the art. The ability of an Acinetobacier fragment to exhibit a biological activity of

A. baumannii

polypeptide can be assessed by methods known to those skilled in the art as described herein. Also included are

A. baumannii

polypeptides containing residues that are not required for biological activity of the peptide or that result from alternative mRNA splicing or alternative protein processing events.

An “immunogenic component” as used herein is a moiety, such as an

A. baumannii

polypeptide, analog or fragment thereof, that is capable of eliciting a humoral and/or cellular immune response in a host animal.

An “antigenic component” as used herein is a moiety, such as an

A. baumannii

polypeptide, analog or fragment thereof, that is capable of binding to a specific antibody with sufficiently high affinity to form a detectable antigen-antibody complex.

The term “antibody” as used herein is intended to include fragments thereof which are specifically reactive with

A. baumannii

polypeptides.

As used herein, the term “cell-specific promoter” means a DNA sequence that serves as a promoter, i.e., regulates expression of a selected DNA sequence operably linked to the promoter, and which effects expression of the selected DNA sequence in specific cells of a tissue. The term also covers so-called “leaky” promoters, which regulate expression of a selected DNA primarily in one tissue, but cause expression in other tissues as well.

Misexpression, as used herein, refers to a non-wild type pattern of gene expression. It includes: expression at non-wild type levels, i.e., over or under expression; a pattern of expression that differs from wild type in terms of the time or stage at which the gene is expressed, e.g., increased or decreased expression (as compared with wild type) at a predetermined developmental period or stage; a pattern of expression that differs from wild type in terms of increased expression (as compared with wild type) in a predetermined cell type or tissue type; a pattern of expression that differs from wild type in terms of the splicing size, amino acid sequence, post-translational modification, or biological activity of the expressed polypeptide; a pattern of expression that differs from wild type in terms of the effect of an environmental stimulus or extracellular stimulus on expression of the gene, e.g., a pattern of increased or decreased expression (as compared with wild type) in the presence of an increase or decrease in the strength of the stimulus.

As used herein, “host cells” and other such terms denoting microorganisms or higher eukaryotic cell lines cultured as unicellular entities refers to cells which can become or have been used as recipients for a recombinant vector or other transfer DNA, and include the progeny of the original cell which has been transfected. It is understood by individuals skilled in the art that the progeny of a single parental cell may not necessarily be completely identical in genomic or total DNA compliment to the original parent, due to accident or deliberate mutation.

As used herein, the term “control sequence” refers to a nucleic acid having a base sequence which is recognized by the host organism to effect the expression of encoded sequences to which they are ligated. The nature of such control sequences differs depending upon the host organism; in prokaryotes, such control sequences generally include a promoter, ribosomal binding site, terminators, and in some cases operators; in eukaryotes, generally such control sequences include promoters, terminators and in some instances, enhancers. The term control sequence is intended to include at a minimum, all components whose presence is necessary for expression, and may also include additional components whose presence is advantageous, for example, leader sequences.

As used herein, the term “operably linked” refers to sequences joined or ligated to function in their intended manner. For example, a control sequence is operably linked to coding sequence by ligation in such a way that expression of the coding sequence is achieved under conditions compatible with the control sequence and host cell.

The “metabolism” of a substance, as used herein, means any aspect of the expression, function, action, or regulation of the substance. The metabolism of a substance includes modifications, e.g., covalent or non-covalent modifications of the substance. The metabolism of a substance includes modifications, e.g., covalent or non-covalent modification, the substance induces in other substances. The metabolism of a substance also includes changes in the distribution of the substance. The metabolism of a substance includes changes the substance induces in the distribution of other substances.

A “sample” as used herein refers to a biological sample, such as, for example, tissue or fluid isloated from an individual (including without limitation plasma, serum, cerebrospinal fluid, lymph, tears, saliva and tissue sections) or from in vitro cell culture constituents, as well as samples from the environment.

Technical and scientific terms used herein have the meanings commonly understood by one of ordinary skill in the art to which the present invention pertains, unless otherwise defined. Reference is made herein to various methodologies known to those of skill in the art. Publications and other materials setting forth such known methodologies to which reference is made are incorporated herein by reference in their entireties as though set forth in full. The practice of the invention will employ, unless otherwise indicated, conventional techniques of chemistry, molecular biology, microbiology, recombinant DNA, and immunology, which are within the skill of the art. Such techniques are explained fully in the literature. See e.g., Sambrook, Fritsch, and Maniatis,

Molecular Cloning; Laboratory Manual

2nd ed. (1989);

DNA Cloning

, Volumes I and II (D. N Glover ed. 1985);

Oligonucleotide Synthesis

(M. J. Gait ed, 1984);

Nucleic Acid Hybridization

(B. D. Hames & S. J. Higgins eds. 1984); the series,

Methods in Enzymoloqy

(Academic Press, Inc.), particularly Vol. 154 and Vol. 155 (Wu and Grossman, eds.);

PCR

-

A Practical Approach

(McPherson, Quirke, and Taylor, eds., 1991);

Immunology

, 2d Edition, 1989, Roitt et al., C. V. Mosby Company, and New York;

Advanced Immunology

, 2d Edition, 1991, Male et al., Grower Medical Publishing, New York.;

DNA Cloning: A Practical Approach

, Volumes I and II, 1985 (D. N. Glover ed.);

Oligonucleolide Synthesis

, 1984, (M. L. Gait ed);

Transcription and Translation

, 1984 (Hames and Higgins eds.);

Animal Cell Culture

, 1986 (R. I. Freshney ed.);

Immobilized Cells and Enymes

, 1986 (IRL Press); Perbal, 1984

, A Practical Guide to Molecular Cloning; Gene Transfer Vectors for Mammalian Cells

, 1987 (J. H. Miller and M. P. Calos eds., Cold Spring Harbor Laboratory); Martin J. Bishop, ed.,

Guide to Human Genome Computing

, 2d Edition, Academic Press, San Diego, Calif. (1998); and Leonard F. Peruski, Jr., and Anne Harwood Peruski,

The Internet and the New Biology: Tools for Genomic and Molecular Research

, American Society for Microbiology, Washington, D.C. (1997).

Any suitable materials and/or methods known to those of skill can be utilized in carrying out the present invention; however, preferred materials and/or methods are described. Materials, reagents and the like to which reference is made in the following description and examples are obtainable from commercial sources, unless otherwise noted.

A. Baumannii

Genomic Sequence

This invention provides nucleotide sequences of the genome of

A. baumannii

which thus comprises a DNA sequence library of

A. baumannii

genomic DNA. The detailed description that follows provides nucleotide sequences of

A. baumannii

, and also describes how the sequences were obtained and how ORFs and protein-coding sequences were identified. Also described are compositions and methods of using the disclosed

A. baumannii

sequences in methods including diagnostic and therapeutic applications. Furthermore, the library can be used as a database for identification and comparison of medically important sequences in this and other strains of

A. baumannii.

To determine the genomic sequence of

A. baumannii

, DNA from strain 15839 of

A. baumannii

was isolated after Zymolyase digestion, sodium dodecyl sulfate lysis, potassium acetate precipitation, phenol:chloroform extraction and ethanol precipitation (Soll, D. R., T. Srikantha and S. R. Lockhart: Characterizing Developmentally Regulated Genes in

A. baumannii

. In Microbial Genome Methods. K. W. Adolph, editor. CRC Press. New York. p 17-37.). DNA was sheared hydrodynamically using an HPLC (Oefner, et. al., 1996) to an insert size of 2000-3000 bp. After size fractionation by gel electrophoresis the fragments were blunt-ended, ligated to adapter oligonucleotides and cloned into the pGTC (Thomann) vector to construct a “shotgun” subclone library.

DNA sequencing was achieved using established ABI sequencing methods on ABI377 automated DNA sequencers. The cloning and sequencing procedures are described in more detail in the Exemplification.

Individual sequence reads were assembled using PHRAP (P. Green, Abstracts of DOE Human Genome Program Contractor-Grantee Workshop V, January 1996, p. 157). The average contig length was about 3-4 kb.

All subsequent steps were based on sequencing by ABI377 automated DNA sequencing methods. The cloning and sequencing procedures are described in more detail in the Exemplification.

A variety of approaches may be used to order the contigs so as to obtain a continuous sequence representing the entire

A. baumannii

genome. Synthetic oligonucleotides are designed that are complementary to sequences at the end of each contig. These oligonucleotides may be hybridized to libaries of

A. baumannii

genomic DNA in, for example, lambda phage vectors or plasmid vectors to identify clones that contain sequences corresponding to the junctional regions between individual contigs. Such clones are then used to isolate template DNA and the same oligonucleotides are used as primers in polymerase chain reaction (PCR) to amplify junctional fragments, the nucleotide sequence of which is then determined.

The

A. baumannii

sequences were analyzed for the presence of open reading frames (ORFs) comprising at least 180 nucleotides. As a result of the analysis of ORFs based on stop-to-stop codon reads, it should be understood that these ORFs may not correspond to the ORF of a naturally-occurring

A. baumannii

polypeptide. These ORFs may contain start codons which indicate the initiation of protein synthesis of a naturally-occurring

A. baumannii

polypeptide. Such start codons within the ORFs provided herein were identified by those of ordinary skill in the relevant art, and the resulting ORF and the encoded

A. baumannii

polypeptide is within the scope of this invention. For example, within the ORFs a codon such as AUG or GUG (encoding methionine or valine) which is part of the initiation signal for protein synthesis were identified and the portion of an ORF to corresponding to a naturally-occurring

A. baumannii

polypeptide was recognized. The predicted coding regions were defined by evaluating the coding potential of such sequences with the program GENEMARK™ (Borodovsky and McIninch, 1993

, Comp

. 17:123).

Each predicted ORF amino acid sequence was compared with all sequences found in current GENBANK, SWISS-PROT, and PIR databases using the BLAST algorithm. BLAST identifies local alignments occurring by chance between the ORF sequence and the sequence in the databank (Altschal et al., 1990, L Mol. Biol. 215:403-410). Homologous ORFs (probabilities less than 10

−5

by chance) and ORF's that are probably non-homologous (probabilities greater than 10

−5

by chance) but have good codon usage were identified. Both homologous, sequences and non-homologous sequences with good codon usage, are likely to encode proteins and are encompassed by the invention.

A. Baumannii

Nucleic Acids

The present invention provides a library of

A. baumannii

-derived nucleic acid sequences. The libraries provide probes, primers, and markers which are used as markers in epidemiological studies. The present invention also provides a library of

A. baumannii

-derived nucleic acid sequences which comprise or encode targets for therapeutic drugs.

The nucleic acids of this invention may be obtained directly from the DNA of the above referenced

A. baumannii

strain by using the polymerase chain reaction (PCR). See “

PCR, A Practical Approach

” (McPherson, Quirke, and Taylor, eds., IRL Press, Oxford, UK, 1991) for details about the PCR. High fidelity PCR's used to ensure a faithful DNA copy prior to expression. In addition, the authenticity of amplified products is verified by conventional sequencing methods. Clones carrying the desired sequences described in this invention may also be obtained by screening the libraries by means of the PCR or by hybridization of synthetic oligonucleotide probes to filter lifts of the library colonies or plaques as known in the art (see, e.g., Sambrook et al.,

Molecular Cloning, A Laboratory Manual

2nd edition, 1989, Cold Spring Harbor Press, NY).

It is also possible to obtain nucleic acids encoding

A. baumannii

polypeptides from a cDNA library in accordance with protocols herein described. A cDNA encoding an

A. baumannii

polypeptide can be obtained by isolating total mRNA from an appropriate strain. Double stranded cDNAs can then be prepared from the total mRNA. Subsequently, the cDNAs can be inserted into a suitable plasmid or viral (e.g., bacteriophage) vector using any one of a number of known techniques. Genes encoding

A. baumannii

polypeptides can also be cloned using established polymerase chain reaction techniques in accordance with the nucleotide sequence information provided by the invention. The nucleic acids of the invention can be DNA or RNA. Preferred nucleic acids of the invention are contained in the Sequence Listing.

The nucleic acids of the invention can also be chemically synthesized using standard techniques. Various methods of chemically synthesizing polydeoxynucleotides are known, including solid-phase synthesis which, like peptide synthesis, has been fully automated in commercially available DNA synthesizers (See e.g., Itakura et al. U.S. Pat. No. 4,598,049; Caruthers et al. U.S. Pat. No. 4,458,066; and Itakura U.S. Pat. Nos. 4,401,796 and 4,373,071, incorporated by reference herein).

In another example, DNA can be chemically synthesized using, e.g., the phosphoramidite solid support method of Matteucci et al., 1981

, J. Am. Chem. Soc

. 103:3185, the method of Yoo et al., 1989

, J. Biol. Chem

. 764:17078, or other well known methods. This can be done by sequentially linking a series of oligonucleotide cassettes comprising pairs of synthetic oligonucleotides, as described below.

Nucleic acids isolated or synthesized in accordance with features of the present invention are useful, by way of example, without limitation, as probes, primers, capture ligands, antisense genes and for developing expression systems for the synthesis of proteins and peptides corresponding to such sequences. As probes, primers, capture ligands and antisense agents, the nucleic acid normally consists of all or part (approximately twenty or more nucleotides for specificity as well as the ability to form stable hybridization products) of the nucleic acids of the invention contained in the Sequence Listing. These uses are described in further detail below.

Probes

A nucleic acid isolated or synthesized in accordance with the sequence of the invention contained in the Sequence Listing can be used as a probe to specifically detect

A. baumannii

. With the sequence information set forth in the present application, sequences of twenty or more nucleotides are identified which provide the desired inclusivity and exclusivity with respect to

A. baumannii

, and extraneous nucleic acids likely to be encountered during hybridization conditions. More preferably, the sequence will comprise at least about twenty to thirty nucleotides to convey stability to the hybridization product formed between the probe and the intended target molecules.

Sequences larger than 1000 nucleotides in length are difficult to synthesize but can be generated by recombinant DNA techniques. Individuals skilled in the art will readily recognize that the nucleic acids, for use as probes, can be provided with a label to facilitate detection of a hybridization product.

Nucleic acid isolated and synthesized in accordance with the sequence of the invention contained in the Sequence Listing can also be useful as probes to detect homologous regions (especially homologous genes) of other Acinetobacter species using appropriate stringency hybridization conditions as described herein.

Capture Ligand

For use as a capture ligand, the nucleic acid selected in the manner described above with respect to probes, can be readily associated with a support. The manner in which nucleic acid is associated with supports is well known. Nucleic acid having twenty or more nucleotides in a sequence of the invention contained in the Sequence Listing have utility to separate

A. baumannii

nucleic acid from one strain from the nucleic acid of other another strain as well as from other organisms. Nucleic acid having twenty or more nucleotides in a sequence of the invention contained in the Sequence Listing can also have utility to separate other Acinetobacter species from each other and from other organisms. Preferably, the sequence will comprise at least about twenty nucleotides to convey stability to the hybridization product formed between the probe and the intended target molecules. Sequences larger than 1000 nucleotides in length are difficult to synthesize but can be generated by recombinant DNA techniques.

Primers

Nucleic acid isolated or synthesized in accordance with the sequences described herein have utility as primers for the amplification of

A. baumannii

nucleic acid. These nucleic acids may also have utility as primers for the amplification of nucleic acids in other Acinetobacter species. With respect to polymerase chain reaction (PCR) techniques, nucleic acid sequences of ≧10-15 nucleotides of the invention contained in the Sequence Listing have utility in conjunction with suitable enzymes and reagents to create copies of

A. baumannii

nucleic acid. More preferably, the sequence will comprise twenty or more nucleotides to convey stability to the hybridization product formed between the primer and the intended target molecules. Binding conditions of primers greater than 100 nucleotides are more difficult to control to obtain specificity. High fidelity PCR can be used to ensure a faithful DNA copy prior to expression. In addition, amplified products can be checked by conventional sequencing methods.

The copies can be used in diagnostic assays to detect specific sequences, including genes from

A. baumannii

and/or other Acinetobacter species. The copies can also be incorporated into cloning and expression vectors to generate polypeptides corresponding to the nucleic acid synthesized by PCR, as is described in greater detail herein.

The nucleic acids of the present invention find use as templates for the recombinant production of

A. baumannii

-derived peptides or polypeptides.

Antisense

Nucleic acid or nucleic acid-hybridizing derivatives isolated or synthesized in accordance with the sequences described herein have utility as antisense agents to prevent the expression of

A. baumannii

genes. These sequences also have utility as antisense agents to prevent expression of genes of other Acinetobacter species.

In one embodiment, nucleic acid or derivatives corresponding to

A. baumannii

nucleic acids is loaded into a suitable carrier such as a liposome or bacteriophage for introduction into bacterial cells. For example, a nucleic acid having twenty or more nucleotides is capable of binding to bacteria nucleic acid or bacteria messenger RNA. Preferably, the antisense nucleic acid is comprised of 20 or more nucleotides to provide necessary stability of a hybridization product of non-naturally occurring nucleic acid and bacterial nucleic acid and/or bacterial messenger RNA. Nucleic acid having a sequence greater than 1000 nucleotides in length is difficult to synthesize but can be generated by recombinant DNA techniques. Methods for loading antisense nucleic acid in liposomes is known in the art as exemplified by U.S. Pat. No. 4,241,046 issued Dec. 23, 1980 to Papahadjopoulos et al.

The present invention encompasses isolated polypeptides and nucleic acids derived from

A. baumannii

that are useful as reagents for diagnosis of bacterial infection, components of effective anti-bacterial vaccines, and/or as targets for anti-bacterial drugs, including anti-

A. baumannii

drugs.

Expression of

A. Baumannii

Nucleic Acids

Table 2, which is appended herewith and which forms part of the present specification, provides a list of open reading frames (ORFs) in both strands and a putative identification of the particular function of a polypeptide which is encoded by each ORF, based on the homology match (determined by the BLAST algorithm) of the predicted polypeptide with known proteins encoded by ORFs in other organisms. An ORF is a region of nucleic acid which encodes a polypeptide. This region may represent a portion of a coding sequence or a total sequence and was determined from stop to stop codons. The first column contains a designation for the contig, from which each ORF was identified (numbered arbitrarily). Each contig represents a continuous stretch of the genomic sequence of the organism. The second column lists the ORF designation. The third and fourth columns list the SEQ ID numbers for the nucleic acid and amino acid sequences corresponding to each ORF, respectively. The fifth and sixth columns list the length of the nucleic acid ORF and the length of the amino acid ORF, respectively. The nucleotide sequence corresponding to each ORF begins at the first nucleotide immediately following a stop codon and ends at the nucleotide immediately preceding the next downstream stop codon in the same reading frame. It will be recognized by one skilled in the art that the natural translation initiation sites will correspond to ATG, GTG, or TTG codons located within the ORFs. The natural initiation sites depend not only on the sequence of a start codon but also on the context of the DNA sequence adjacent to the start codon. Usually, a recognizable ribosome binding site is found within 20 nucleotides upstream from the initiation codon. In some cases where genes are translationally coupled and coordinately expressed together in “operons”, ribosome binding sites are not present, but the initiation codon of a downstream gene may occur very close to, or overlap, the stop codon of the an upstream gene in the same operon. The correct start codons can be generally identified without undue experimentation because only a few codons need be tested. It is recognized that the translational machinery in bacteria initiates all polypeptide chains with the amino acid methionine, regardless of the sequence of the start codon. In some cases, polypeptides are post-translationally modified, resulting in an N-terminal amino acid other than methionine in vivo. The seventh and eighth columns provide metrics for assessing the likelihood of the homology match (determined by the BLASTP2 algorithm), as is known in the art, to the genes indicated in the nineth column when the designated ORF was compared against a non-redundant comprehensive protein database. Specifically, the seventh column represents the “Blast Score” for the match (a higher score is a better match), and the eighth column represents the “P-value” for the match (the probability that such a match can have occurred by chance; the lower the value, the more likely the match is valid). If a BLASTP2 score of less than 46 was obtained, no value is reported in the table the “P-value”. The ninth column provides, where available, the Swissprot accession number (SP), (SP), the locus name (LN), the Organism (OR), Source of variant (SR), E.C. number (EC), the gene name (GN), the product name (PN), the Function Description (FN), Left End (LE), Right End (RE), Coding Direction (DI), and the description (DE) or notes (NT) for each ORF. Information that is not preceded by a code designation in the eleventh column represents a description of the ORF. This information allows one of ordinary skill in the art to determine a potential use for each identified coding sequence and, as a result, allows to use the polypeptides of the present invention for commercial and industrial purposes.

Using the information provided in SEQ ID NO:1-SEQ ID NO:4126, SEQ ID NO:4127-SEQ ID NO:8252 and in Table 2 together with routine cloning and sequencing methods, one of ordinary skill in the art will be able to clone and sequence all the nucleic acid fragments of interest including open reading frames (ORFs) encoding a large variety of proteins of

A. baumannii.

Nucleic acid isolated or synthesized in accordance with the sequences described herein have utility to generate polypeptides. The nucleic acid of the invention exemplified in SEQ ID NO:1-SEQ ID NO:4126 and in Table 2 or fragments of said nucleic acid encoding active portions of

A. baumannii

polypeptides can be cloned into suitable vectors or used to isolate nucleic acid. The isolated nucleic acid is combined with suitable DNA linkers and cloned into a suitable vector.

The function of a specific gene or operon can be ascertained by expression in a bacterial strain under conditions where the activity of the gene product(s) specified by the gene or operon in question can be specifically measured. Alternatively, a gene product may be produced in large quantities in an expressing strain for use as an antigen, an industrial reagent, for structural studies, etc. This expression can be accomplished in a mutant strain which lacks the activity of the gene to be tested, or in a strain that does not produce the same gene product(s). This includes, but is not limited to, Eucaryotic species such as the yeast

Saccharomyces cerevisiae

, Methanobacierium strains or other Archaea, and Eubacteria such as

E. coli, B. Subtilis, S. Aitreus, S. Pneumonia

or

Pseudomonas putida

. In some cases the expression host will utilize the natural

A. baumannii

promoter whereas in others, it will be necessary to drive the gene with a promoter sequence derived from the expressing organism (e.g., an

E. coli

beta-galactosidase promoter for expression in

E. coli

).

To express a gene product using the natural

A. baumannii

promoter, a procedure such as the following can be used. A restriction fragment containing the gene of interest, together with its associated natural promoter element and regulatory sequences (identified using the DNA sequence data) is cloned into an appropriate recombinant plasmid containing an origin of replication that functions in the host organism and an appropriate selectable marker. This can be accomplished by a number of procedures known to those skilled in the art. It is most preferably done by cutting the plasmid and the fragment to be cloned with the same restriction enzyme to produce compatible ends that can be ligated to join the two pieces together. The recombinant plasmid is introduced into the host organism by, for example, electroporation and cells containing the recombinant plasmid are identified by selection for the marker on the plasmid. Expression of the desired gene product is detected using an assay specific for that gene product.

In the case of a gene that requires a different promoter, the body of the gene (coding sequence) is specifically excised and cloned into an appropriate expression plasmid. This subcloning can be done by several methods, but is most easily accomplished by PCR amplification of a specific fragment and ligation into an expression plasmid after treating the PCR product with a restriction enzyme or exonuclease to create suitable ends for cloning.

A suitable host cell for expression of a gene can be any procaryotic or eucaryotic cell. Suitable methods for transforming host cells can be found in Sambrook et al. (

Molecular Cloning: A Laboratory Manual

, 2nd Edition, Cold Spring Harbor Laboratory Press (1989)), and other laboratory textbooks.

For example, a host cell transfected with a nucleic acid vector directing expression of a nucleotide sequence encoding an

A. baumannii

polypeptide can be cultured under appropriate conditions to allow expression of the polypeptide to occur. Suitable media for cell culture are well known in the art. Polypeptides of the invention can be isolated from cell culture medium, host cells, or both using techniques known in the art for purifying proteins including ion-exchange chromatography, gel filtration chromatography, ultrafiltration, electrophoresis, and immunoaffinity purification with antibodies specific for such polypeptides. Additionally, in many situations, polypeptides can be produced by chemical cleavage of a native protein (e.g., tryptic digestion) and the cleavage products can then be purified by standard techniques.

In the case of membrane bound proteins, these can be isolated from a host cell by contacting a membrane-associated protein fraction with a detergent forming a solubilized complex, where the membrane-associated protein is no longer entirely embedded in the membrane fraction and is solubilized at least to an extent which allows it to be chromatographically isolated from the membrane fraction. Chromatographic techniques which can be used in the final purification step are known in the art and include hydrophobic interaction, lectin affinity, ion exchange, dye affinity and immunoaffinity.

One strategy to maximize recombinant

A. baumannii

peptide expression in

E. coli

is to express the protein in a host bacteria with an impaired capacity to proteolytically cleave the recombinant protein (Gottesman, S.,

Gene Expression Technology: Methods in Enzymology

185, Academic Press, San Diego, Calif. (1990) 119-128). Another strategy would be to alter the nucleic acid encoding an

A. baumannii

peptide to be inserted into an expression vector so that the individual codons for each amino acid would be those preferentially utilized in highly expressed

E. coli

proteins (Wada et al., (1992)

Nuc. Acids Res

. 20:2111-2118). Such alteration of nucleic acids of the invention can be carried out by standard DNA synthesis techniques.

The nucleic acids of the invention can also be chemically synthesized using standard techniques. Various methods of chemically synthesizing polydeoxynucleotides are known; including solid-phase synthesis which, like peptide synthesis, has been fully automated in commercially available DNA synthesizers (See, e.g., Itakura et al. U.S. Pat. No. 4,598,049; Caruthers et al. U.S. Pat. No. 4,458,066; and Itakura U.S. Pat. Nos. 4,401,796 and 4,373,071, incorporated by reference herein).

The present invention provides a library of

A. baumannii

-derived nucleic acid sequences. The libraries provide probes, primers, and markers which can be used as markers in epidemiological studies. The present invention also provides a library of

A. baumannii

-derived nucleic acid sequences which comprise or encode targets for therapeutic drugs.

Nucleic acids comprising any of the sequences disclosed herein or sub-sequences thereof can be prepared by standard methods using the nucleic acid sequence information provided in SEQ ID NO:1-SEQ ID NO:4126. For example, DNA can be chemically synthesized using, e.g., the phosphoramidite solid support method of Matteucci et al., 1981

, J. Am. Chem. Soc

. 103:3185, the method of Yoo et al., 1989

, J. Biol. Chem

. 764:17078, or other well known methods. This can be done by sequentially linking a series of oligonucleotide cassettes comprising pairs of synthetic oligonucleotides, as described below.

Of course, due to the degeneracy of the genetic code, many different nucleotide sequences can encode polypeptides having the amino acid sequences defined by SEQ ID NO:4127-SEQ ID NO:8252 or sub-sequences thereof. The codons can be selected for optimal expression in prokaryotic or eukaryotic systems. Such degenerate variants are also encompassed by this invention.

Insertion of nucleic acids (typically DNAs) encoding the polypeptides of the invention into a vector is easily accomplished when the termini of both the DNAs and the vector comprise compatible restriction sites. If this cannot be done, it may be necessary to modify the termini of the DNAs and/or vector by digesting back single-stranded DNA overhangs generated by restriction endonuclease cleavage to produce blunt ends, or to achieve the same result by filling in the single-stranded termini with an appropriate DNA polymerase.

Alternatively, any site desired may be produced, e.g., by ligating nucleotide sequences (linkers) onto the termini. Such linkers may comprise specific oligonucleotide sequences that define desired restriction sites. Restriction sites can also be generated by the use of the polymerase chain reaction (PCR). See, e.g., Saiki et al., 1988

, Science

239:48. The cleaved vector and the DNA fragments may also be modified if required by homopolymeric tailing.

The nucleic acids of the invention may be isolated directly from cells. Alternatively, the polymerase chain reaction (PCR) method can be used to produce the nucleic acids of the invention, using either chemically synthesized strands or genomic material as templates. Primers used for PCR can be synthesized using the sequence information provided herein and can further be designed to introduce appropriate new restriction sites, if desirable, to facilitate incorporation into a given vector for recombinant expression.

The nucleic acids of the present invention may be flanked by natural

A. baumannii

regulatory sequences, or may be associated with heterologous sequences, including promoters, enhancers, response elements, signal sequences, polyadenylation sequences, introns, 5′- and 3′-noncoding regions, and the like. The nucleic acids may also be modified by many means known in the art. Non-limiting examples of such modifications include methylation, “caps”, substitution of one or more of the naturally occurring nucleotides with an analog, internucleotide modifications such as, for example, those with uncharged linkages (e.g., methyl phosphonates, phosphotriesters, phosphoroamidates, carbamates, etc.) and with charged linkages (e.g., phosphorothioates, phosphorodithioates, etc.). Nucleic acids may contain one or more additional covalently linked moieties, such as, for example, proteins (e.g., nucleases, toxins, antibodies, signal peptides, poly-L-lysine, etc.), intercalators (e.g., acridine, psoralen, etc.), chelators (e.g., metals, radioactive metals, iron, oxidative metals, etc.), and alkylators. PNAs are also included. The nucleic acid may be derivatized by formation of a methyl or ethyl phosphotriester or an alkyl phosphoramidate linkage. Furthermore, the nucleic acid sequences of the present invention may also be modified with a label capable of providing a detectable signal, either directly or indirectly. Exemplary labels include radioisotopes, fluorescent molecules, biotin, and the like.

The invention also provides nucleic acid vectors comprising the disclosed

A. baumannii

-derived sequences or derivatives or fragments thereof. A large number of vectors, including plasmid and bacterial vectors, have been described for replication and/or expression in a variety of eukaryotic and prokaryotic hosts, and may be used for cloning or protein expression.

The encoded

A. baumannii

polypeptides may be expressed by using many known vectors, such as pUC plasmids, pET plasmids (Novagen, Inc., Madison, Wis.), or pRSET or pREP (anvitrogen, San Diego, Calif.), and many appropriate host cells, using methods disclosed or cited herein or otherwise known to those skilled in the relevant art. The particular choice of vector/host is not critical to the practice of the invention.

Recombinant cloning vectors will often include one or more replication systems for cloning or expression, one or more markers for selection in the host, e.g. antibiotic resistance, and one or more expression cassettes. The inserted

A. baumannii

coding sequences may be synthesized by standard methods, isolated from natural sources, or prepared as hybrids, etc. Ligation of the

A. baumannii

coding sequences to transcriptional regulatory elements and/or to other amino acid coding sequences may be achieved by known methods. Suitable host cells may be transformed/transfected/infected as appropriate by any suitable method including electroporation, CaCl

2

mediated DNA uptake, bacterial infection, microinjection, microprojectile, or other established methods.

Appropriate host cells include bacteria, archebacteria, fungi, especially yeast, and plant and animal cells, especially mammalian cells. Of particular interest are

A. baumannii, E. coli, B. Subtilis, Saccharomyces cerevisiae, Saccharomyces carlsbergensis, Schizosaccharomyces pombi

, SF9 cells, C129 cells, 293 cells, Neurospora, and CHO cells, COS cells, HeLa cells, and immortalized mammalian myeloid and lymphoid cell lines. Preferred replication systems include M13, ColE1, SV40, baculovirus, lambda, adenovirus, and the like. A large number of transcription initiation and termination regulatory regions have been isolated and shown to be effective in the transcription and translation of heterologous proteins in the various hosts Examples of these regions, methods of isolation, manner of manipulation, etc. are known in the art. Under appropriate expression conditions, host cells can be used as a source of recombinantly produced

A. baumannii

-derived peptides and polypeptides.

Advantageously, vectors may also include a transcription regulatory element (i.e., promoter) operably linked to the

A. baumannii

portion. The promoter may optionally contain operator portions and/or ribosome binding sites. Non-limiting examples of bacterial promoters compatible with

E. coli

include: b-lactamase (penicillinase) promoter; lactose promoter; tryptophan (trp) promoter; araBAD (arabinose) operon promoter; lambda-derived P

1

promoter and N gene ribosome binding site; and the hybrid tac promoter derived from sequences of the trp and lac UV5 promoters. Non-limiting examples of yeast promoters include 3-phosphoglycerate kinase promoter, glyceraldehyde-3-phosphate dehydrogenase (GAPDH) promoter, galactokinase (GAL1) promoter, galactoepimerase promoter, and alcohol dehydrogenase (ADH) promoter. Suitable promoters for mammalian cells include without limitation viral promoters such as that from Simian Virus 40 (SV40), Rous sarcoma virus (RSV), adenovirus (ADV), and bovine papilloma virus (BPV). Mammalian cells may also require terminator sequences, polyA addition sequences and enhancer sequences to increase expression. Sequences which cause amplification of the gene may also be desirable. Furthermore, sequences that facilitate secretion of the recombinant product from cells, including, but not limited to, bacteria, yeast, and animal cells, such as secretory signal sequences and/or prohormone pro region sequences, may also be included. These sequences are well described in the art.

Nucleic acids encoding wild-type or variant

A. baumannii

-derived polypeptides may also be introduced into cells by recombination events. For example, such a sequence can be introduced into a cell, and thereby effect homologous recombination at the site of an endogenous gene or a sequence with substantial identity to the gene. Other recombination-based methods such as nonhomologous recombinations or deletion of endogenous genes by homologous recombination may also be used.

The nucleic acids of the present invention find use as templates for the recombinant production of

A. baumannii

-derived peptides or polypeptides.

Identification and Use of

A. Baumannii

Nucleic Acid Sequences

The disclosed

A. baumannii

polypeptide and nucleic acid sequences, or other sequences that are contained within ORFs, including complete protein-coding sequences, of which any of the disclosed

A. baumannii

-specific sequences forms a part, are useful as target components for diagnosis and/or treatment of

A. baumannii

-caused infection.

It will be understood that the sequence of an entire protein-coding sequence of which each disclosed nucleic acid sequence forms a part can be isolated and identified based on each disclosed sequence. This can be achieved, for example, by using an isolated nucleic acid encoding the disclosed sequence, or fragments thereof, to prime a sequencing reaction with genomic

A. baumannii

DNA as template; this is followed by sequencing the amplified product. The isolated nucleic acid encoding the disclosed sequence, or fragments thereof, can also be hybridized to

A. baumannii

genomic libraries to identify clones containing additional complete segments of the protein-coding sequence of which the shorter sequence forms a part. Then, the entire protein-coding sequence, or fragments thereof, or nucleic acids encoding all or part of the sequence, or sequence-conservative or function-conservative variants thereof, may be employed in practicing the present invention.

Preferred sequences are those that are useful in diagnostic and/or therapeutic applications. Diagnostic applications include without limitation nucleic-acid-based and antibody-based methods for detecting bacterial infection. Therapeutic applications include without limitation vaccines, passive immunotherapy, and drug treatments directed against gene products that are both unique to bacteria and essential for growth and/or replication of bacteria.

Identification of Nucleic Acids Encoding Vaccine Components and Targets for Agents Effective Against

A. Baumannii

The disclosed

A. baumannii

genome sequence includes segments that direct the synthesis of ribonucleic acids and polypeptides, as well as origins of replication, promoters, other types of regulatory sequences, and intergenic nucleic acids. The invention encompasses nucleic acids encoding immunogenic components of vaccines and targets for agents effective against

A. baumannii

. Identification of said immunogenic components involved in the determination of the function of the disclosed sequences, which can be achieved using a variety of approaches. Non-limiting examples of these approaches are described briefly below.

Homology to Known Sequences

Computer-assisted comparison of the disclosed

A. baumannii

sequences with previously reported sequences present in publicly available databases is useful for identifying functional

A. baumannii

nucleic acid and polypeptide sequences. It will be understood that protein-coding sequences, for example, may be compared as a whole, and that a high degree of sequence homology between two proteins (such as, for example, >80-90%) at the amino acid level indicates that the two proteins also possess some degree of functional homology, such as, for example, among enzymes involved in metabolism, DNA synthesis, or cell wall synthesis, and proteins involved in transport, cell division, etc. In addition, many structural features of particular protein classes have been identified and correlate with specific consensus sequences, such as, for example, binding domains for nucleotides, DNA, metal ions, and other small molecules; sites for covalent modifications such as phosphorylation, acylation, and the like; sites of protein:protein interactions, etc. These consensus sequences may be quite short and thus may represent only a fraction of the entire protein-coding sequence. Identification of such a feature in an

A. baumannii

sequence is therefore useful in determining the function of the encoded protein and identifying useful targets of antibacterial drugs.

Of particular relevance to the present invention are structural features that are common to secretory, transmembrane, and surface proteins, including secretion signal peptides and hydrophobic transmembrane domains.

A. baumannii

proteins identified as containing putative signal sequences and/or transmembrane domains are useful as immunogenic components of vaccines.

Targets for therapeutic drugs according to the invention include, but are not limited to, polypeptides of the invention, whether unique to

A. baumannii

or not, that are essential for growth and/or viability of

A. baumannii

under at least one growth condition. Polypeptides essential for growth and/or viability can be determined by examining the effect of deleting and/or disrupting the genes, i.e., by so-called gene “knockout”. Alternatively, genetic footprinting can be used (Smith et al., 1995

, Proc. Natl. Acad. Sci. USA

92:5479-6433; Published International Application WO 94/26933; U.S. Pat. No. 5,612,180). Still other methods for assessing essentiality includes the ability to isolate conditional lethal mutations in the specific gene (e.g., temperature sensitive mutations). Other useful targets for therapeutic drugs, which include polypeptides that are not essential for growth or viability per se but lead to loss of viability of the cell, can be used to target therapeutic agents to cells.

Strain-specific Sequences

Because of the evolutionary relationship between different

A. baumannii

strains, it is believed that the presently disclosed

A. baumannii

sequences are useful for identifying, and/or discriminating between, previously known and new

A. baumannii

strains. It is believed that other

A. baumannii

strains will exhibit at least about 70% sequence homology with the presently disclosed sequence. Systematic and routine analyses of DNA sequences derived from samples containing

A. baumannii

strains, and comparison with the present sequence allows for the identification of sequences that can be used to discriminate between strains, as well as those that are common to all

A. baumannii

strains. In one embodiment, the invention provides nucleic acids, including probes, and peptide and polypeptide sequences that discriminate between different strains of

A. baumannii

. Strain-specific components can also be identified functionally by their ability to elicit or react with antibodies that selectively recognize one or more

A. baumannii

strains.

In another embodiment, the invention provides nucleic acids, including probes, and peptide and polypeptide sequences that are common to all

A. baumannii

strains but are not found in other bacterial species.

A. Baumannii

Polypeptides

This invention encompasses isolated

A. baumannii

polypeptides encoded by the disclosed

A. baumannii

genomic sequences, including the polypeptides of the invention contained in the Sequence Listing. Polypeptides of the invention are preferably at least about 5 amino acid residues in length. Using the DNA sequence information provided herein, the amino acid sequences of the polypeptides encompassed by the invention can be deduced using methods well-known in the art. It will be understood that the sequence of an entire nucleic acid encoding an

A. baumannii

polypeptide can be isolated and identified based on an ORF that encodes only a fragment of the cognate protein-coding region. This can be achieved, for example, by using the isolated nucleic acid encoding the ORF, or fragments thereof, to prime a polymerase chain reaction with genomic

A. baumannii

DNA as template; this is followed by sequencing the amplified product.

The polypeptides of the present invention, including function-conservative variants of the disclosed ORFs, may be isolated from wild-type or mutant

A. baumannii

cells, or from heterologous organisms or cells (including, but not limited to, bacteria, fungi, insect, plant, and mammalian cells) including

A. baumannii

into which an

A. baumannii

-derived protein-coding sequence has been introduced and expressed. Furthermore, the polypeptides may be part of recombinant fusion proteins.

A. baumannii

polypeptides of the invention can be chemically synthesized using commercially automated procedures such as those referenced herein , including, without limitation, exclusive solid phase synthesis, partial solid phase methods, fragment condensation or classical solution synthesis. The polypeptides are preferably prepared by solid phase peptide synthesis as described by Merrifield, 1963

, J. Am. Chem. Soc

. 85:2149. The synthesis is carried out with amino acids that are protected at the alpha-amino terminus. Trifunctional amino acids with labile side-chains are also protected with suitable groups to prevent undesired chemical reactions from occurring during the assembly of the polypeptides. The alpha-amino protecting group is selectively removed to allow subsequent reaction to take place at the amino-terminus. The conditions for the removal of the alpha-amino protecting group do not remove the side-chain protecting groups.

Methods for polypeptide purification are well-known in the art, including, without limitation, preparative disc-gel electrophoresis, isoelectric focusing, HPLC, reversed-phase HPLC, gel filtration, ion exchange and partition chromatography, and countercurrent distribution. For some purposes, it is preferable to produce the polypeptide in a recombinant system in which the

A. baumannii

protein contains an additional sequence tag that facilitates purification, such as, but not limited to, a polyhistidine sequence. The polypeptide can then be purified from a crude lysate of the host cell by chromatography on an appropriate solid-phase matrix. Alternatively, antibodies produced against an

A. baumannii

protein or against peptides derived therefrom can be used as purification reagents. Other purification methods are possible.

The present invention also encompasses derivatives and homologues of

A. baumannii

-encoded polypeptides. For some purposes, nucleic acid sequences encoding the peptides may be altered by substitutions, additions, or deletions that provide for functionally equivalent molecules, i.e., function-conservative variants. For example, or or more amino acid residues within the sequence can be substituted by another amino acid of similar properties, such as, for example, positively charged amino acids (arginine, lysine, and histidine); negatively charged amino acids (aspartate and glutamate); polar neutral amino acids; and non-polar amino acids.

The isolated polypeptides may be modified by, for example, phosphorylation, sulfation, acylation, or other protein modifications. They may also be modified with a label capable of providing a detectable signal, either directly or indirectly, including, but not limited to, radioisotopes and fluorescent compounds.

To identify

A. baumannii

-derived polypeptides for use in the present invention, essentially the complete genomic sequence of a virulent, methicillin-resistant isolate of

Acinetobacter mirabilis

isolate was analyzed. While, in very rare instances, a nucleic acid sequencing error may be revealed, resolving a rare sequencing error is well within the art, and such an occurrence will not prevent one skilled in the art from practicing the invention.

Also encompassed are any

A. baumannii

polypeptide sequences that are contained within the open reading frames (ORFs), including complete protein-coding sequences, of which any of SEQ ID NO:1-SEQ ID NO:4126 forms a part. Table 2, which is appended herewith and which forms part of the present specification, provides, putative identification of the particular function of a polypeptide which is encoded by each ORF, based on the homology match (determined by the BLAST algorithm) of the predicted polypeptide with known proteins encoded by ORFs in other organisms. As a result, one skilled in the art can use the polypeptides of the present invention for commercial and industrial purposes consistent with the type of putative identification of the polypeptide.

The present invention provides a library of

A. baumannii

-derived polypeptide sequences, and a corresponding library of nucleic acid sequences encoding the polypeptides, wherein the polypeptides themselves, or polypeptides contained within ORFs of which they form a part, comprise sequences that are contemplated for use as components of vaccines. Non-limiting examples of such sequences are listed by SEQ ID NO in Table 2, which is appended herewith and which forms part of the present specification.

The present invention also provides a library of

A. baumannii

-derived polypeptide sequences, and a corresponding library of nucleic acid sequences encoding the polypeptides, wherein the polypeptides themselves, or polypeptides contained with ORFs of which they form a part, comprise sequences lacking homology to any known prokaryotic or eukaryotic sequences. Such libraries provide probes, primers, and markers which can be used to diagnose

A. baumannii

infection, including use as markers in epidemiological studies. Non-limiting examples of such sequences are listed by SEQ ID NO in Table 2, which is appended hereto and part hereof.

The present invention also provides a library of

A. baumannii

-derived polypeptide sequences, and a corresponding library of nucleic acid sequences encoding the polypeptides, wherein the polypeptides themselves, or polypeptides contained within ORFs of which they form a part, comprise targets for therapeutic drugs.

SPECIFIC EXAMPLE

Determination of Acinetobacter Protein Antigens for Antibody and Vaccine Development

The selection of Acinetobacter protein antigens for vaccine development can be derived from the nucleic acids encoding

A. baumannii

polypeptides. First, the ORF's can be analyzed for homology to other known exported or membrane proteins and analyzed using the discriminant analysis described by Klein, et al. (Klein, P., Kanehsia, M., and DeLisi, C. (1985)

Biochimica et Biophysica Acta

815, 468-476) for predicting exported and membrane proteins.

Homology searches can be performed using the BLAST algorithm contained in the Wisconsin Sequence Analysis Package (Genetics Computer Group, University Research Park, 575 Science Drive, Madison, Wis. 53711) to compare each predicted ORF amino acid sequence with all sequences found in the current GenBank, SWISS-PROT and PIR databases. BLAST searches for local alignments between the ORF and the databank sequences and reports a probability score which indicates the probability of finding this sequence by chance in the database. ORF's with significant homology (e.g. probabilities lower than 1×10

−6

that the homology is only due to random chance) to membrane or exported proteins represent protein antigens for vaccine development. Possible functions can be provided to

A. baumannii

genes based on sequence homology to genes cloned in other organisms.

Discriminant analysis (Klein, et al. supra) can be used to examine the ORF amino acid sequences. This algorithm uses the intrinsic information contained in the ORF amino acid sequence and compares it to information derived from the properties of known membrane and exported proteins. This comparison predicts which proteins will be exported, membrane associated or cytoplasmic. ORF amino acid sequences identified as exported or membrane associated by this algorithm are likely protein antigens for vaccine development.

Production of Fragments and Analogs of

A. Baumannii

Nucleic Acids and Polypeptides

Based on the discovery of the

A. baumannii

gene products of the invention provided in the Sequence Listing, one skilled in the art can alter the disclosed structure of

A. baumannii

genes, e.g., by producing fragments or analogs, and test the newly produced structures for activity. Examples of techniques known to those skilled in the relevant art which allow the production and testing of fragments and analogs are discussed below. These, or analogous methods can be used to make and screen libraries of polypeptides, e.g., libraries of random peptides or libraries of fragments or analogs of cellular proteins for the ability to bind

A. baumannii

polypeptides. Such screens are useful for the identification of inhibitors of

A. baumannii.

Generation of Fragments

Fragments of a protein can be produced in several ways, e.g., recombinantly, by proteolytic digestion, or by chemical synthesis. Internal or terminal fragments of a polypeptide can be generated by removing one or more nucleotides from one end (for a terminal fragment) or both ends (for an internal fragment) of a nucleic acid which encodes the polypeptide. Expression of the mutagenized DNA produces polypeptide fragments. Digestion with “end-nibbling” endonucleases can thus generate DNAs which encode an array of fragments. DNAs which encode fragments of a protein can also be generated by random shearing, restriction digestion or a combination of the above-discussed methods.

Fragments can also be chemically synthesized using techniques known in the art such as conventional Merrifield solid phase f-Moc or t-Boc chemistry. For example, peptides of the present invention may be arbitrarily divided into fragments of desired length with no overlap of the fragments, or divided into overlapping fragments of a desired length.

Alteration of Nucleic Acids and Polypeptides: Random Methods

Amino acid sequence variants of a protein can be prepared by random mutagenesis of DNA which encodes a protein or a particular domain or region of a protein. Useful methods include PCR mutagenesis and saturation mutagenesis. A library of random amino acid sequence variants can also be generated by the synthesis of a set of degenerate oligonucleotide sequences. (Methods for screening proteins in a library of variants are elsewhere herein).

PCR Mutagenesis

In PCR mutagenesis, reduced Taq polymerase fidelity is used to introduce random mutations into a cloned fragment of DNA (Leung et al., 1989

, Technique

1:11-15). The DNA region to be mutagenized is amplified using the polymerase chain reaction (PCR) under conditions that reduce the fidelity of DNA synthesis by Taq DNA polymerase, e.g., by using a dGTP/dATP ratio of five and adding Mn

2+

to the PCR reaction. The pool of amplified DNA fragments are inserted into appropriate cloning vectors to provide random mutant libraries.

Saturation Mutagenesis

Saturation mutagenesis allows for the rapid introduction of a large number of single base substitutions into cloned DNA fragments (Mayers et al., 1985

, Science

229:242). This technique includes generation of mutations, e.g., by chemical treatment or irradiation of single-stranded DNA in vitro, and synthesis of a complimentary DNA strand. The mutation frequency can be modulated by modulating the severity of the treatment, and essentially all possible base substitutions can be obtained. Because this procedure does not involve a genetic selection for mutant fragments both neutral substitutions, as well as those that alter function, are obtained. The distribution of point mutations is not biased toward conserved sequence elements.

Degenerate Oligonucleotides

A library of homologs can also be generated from a set of degenerate oligonucleotide sequences. Chemical synthesis of a degenerate sequences can be carried out in an automatic DNA synthesizer, and the synthetic genes then ligated into an appropriate expression vector. The synthesis of degenerate oligonucleotides is known in the art (see for example, Narang, S A (1983)

Tetrahedron

39:3; Itakura et al. (1981)

Recombinant DNA, Proc

3

rd Cleveland Sympos. Macromolecules

, ed. A G Walton, Amsterdam: Elsevier pp 273-289; Itakura et al. (1984)

Annu. Rev. Biochem

. 53:323; Itakura et al. (1984)

Science

198:1056; Ike et al. (1983)

Nucleic Acid Res

. 11:477. Such techniques have been employed in the directed evolution of other proteins (see, for example, Scott et al. (1990)

Science

249:386-390; Roberts et al. (1992)

PNAS

89:2429-2433; Devlin et al. (1990)

Science

249: 404-406; Cwirla et al. (1990)

PNAS

87: 6378-6382; as well as U.S. Pat. Nos. 5,223,409, 5,198,346, and 5,096,815).

Alteration of Nucleic Acids and Polypeptides: Methods for Directed Mutagenesis

Non-random or directed, mutagenesis techniques can be used to provide specific sequences or mutations in specific regions. These techniques can be used to create variants which include, e.g., deletions, insertions, or substitutions, of residues of the known amino acid sequence of a protein. The sites for mutation can be modified individually or in series, e.g., by (1) substituting first with conserved amino acids and then with more radical choices depending upon results achieved, (2) deleting the target residue, or (3) inserting residues of the same or a different class adjacent to the located site, or combinations of options 1-3.

Alanine Scanning Mutagenesis

Alanine scanning mutagenesis is a useful method for identification of certain residues or regions of the desired protein that are preferred locations or domains for mutagenesis, Cunningham and Wells (

Science

244:1081-1085, 1989). In alanine scanning, a residue or group of target residues are identified (e.g., charged residues such as Arg, Asp, His, Lys, and Glu) and replaced by a neutral or negatively charged amino acid (most preferably alanine or polyalanine). Replacement of an amino acid can affect the interaction of the amino acids with the surrounding aqueous environment in or outside the cell. Those domains demonstrating functional sensitivity to the substitutions are then refined by introducing further or other variants at or for the sites of substitution. Thus, while the site for introducing an amino acid sequence variation is predetermined, the nature of the mutation per se need not be predetermined. For example, to optimize the performance of a mutation at a given site, alanine scanning or random mutagenesis may be conducted at the target codon or region and the expressed desired protein subunit variants are screened for the optimal combination of desired activity.

Oligonucleotide-mediated Mutagenesis

Oligonucleotide-mediated mutagenesis is a useful method for preparing substitution, deletion, and insertion variants of DNA, see, e.g., Adelman et al., (

DNA

2:183, 1983). Briefly, the desired DNA is altered by hybridizing an oligonucleotide encoding a mutation to a DNA template, where the template is the single-stranded form of a plasmid or bacteriophage containing the unaltered or native DNA sequence of the desired protein. After hybridization;, a DNA polymerase is used to synthesize an entire second complementary strand of the template that will thus incorporate the oligonucleotide primer, and will code for the selected alteration in the desired protein DNA. Generally, oligonucleotides of at least about 25 nucleotides in length are used. An optimal oligonucleotide will have 12 to 15 nucleotides that are completely complementary to the template on either side of the nucleotide(s) coding for the mutation. This ensures that the oligonucleotide will hybridize properly to the single-stranded DNA template molecule. The oligonucleotides are readily synthesized using techniques known in the art such as that described by Crea et al. (

Proc. Natl. Acad. Sci. USA

, 75: 5765[1978]).

Cassette Mutagenesis

Another method for preparing variants, cassette mutagenesis, is based on the technique described by Wells et al. (

Gene

, 34:315[1985]). The starting material is a plasmid (or other vector) which includes the protein subunit DNA to be mutated. The codon(s) in the protein subunit DNA to be mutated are identified. There must be a unique restriction endonuclease site on each side of the identified mutation site(s). If no such restriction sites exist, they may be generated using the above-described oligonucleotide-mediated mutagenesis method to introduce them at appropriate locations in the desired protein subunit DNA. After the restriction sites have been introduced into the plasmid, the plasmid is cut at these sites to linearize it. A double-stranded oligonucleotide encoding the sequence of the DNA between the restriction sites but containing the desired mutation(s) is synthesized using standard procedures. The two strands are synthesized separately and then hybridized together using standard techniques. This double-stranded oligonucleotide is referred to as the cassette. This cassette is designed to have 3′ and 5′ ends that are comparable with the ends of the linearized plasmid, such that it can be directly ligated to the plasmid. This plasmid now contains the mutated desired protein subunit DNA sequence.

Combinatorial Mutagenesis

Combinatorial mutagenesis can also be used to generate mutants (Ladner et al., WO 88/06630). In this method, the amino acid sequences for a group of homologs or other related proteins are aligned, preferably to promote the highest homology possible. All of the amino acids which appear at a given position of the aligned sequences can be selected to create a degenerate set of combinatorial sequences. The variegated library of variants is generated by combinatorial mutagenesis at the nucleic acid level, and is encoded by a variegated gene library. For example, a mixture of synthetic oligonucleotides can be enzymatically ligated into gene sequences such that the degenerate set of potential sequences are expressible as individual peptides, or alternatively, as a set of larger fusion proteins containing the set of degenerate sequences.

Other Modifications of

A. Baumannii

Nucleic Acids and Polypeptides

It is possible to modify the structure of an

A. baumannii

polypeptide for such purposes as increasing solubility, enhancing stability (e.g., shelf life ex vivo and resistance to proteolytic degradation in vivo). A modified

A. baumannii

protein or peptide can be produced in which the amino acid sequence has been altered, such as by amino acid substitution, deletion, or addition as described herein.

An

A. baumannii

peptide can also be modified by substitution of cysteine residues preferably with alanine, serine, threonine, leucine or glutamic acid residues to minimize dimerization via disulfide linkages. In addition, amino acid side chains of fragments of the protein of the invention can be chemically modified. Another modification is cyclization of the peptide.

In order to enhance stability and/or reactivity, an

A. baumannii

polypeptide can be modified to incorporate one or more polymorphisms in the amino acid sequence of the protein resulting from any natural allelic variation. Additionally, D-amino acids, non-natural amino acids, or non-amino acid analogs can be substituted or added to produce, modified protein within the scope of this invention. Furthermore, an

A. baumannii

polypeptide can be modified using polyethylene glycol (PEG) according to the method of A. Sehon and co-workers (Wie et al., supra) to produce a protein conjugated with PEG. In addition, PEG can be added during chemical synthesis of the protein. Other modifications of

A. baumannii

proteins include reduction/alkylation (Tarr,

Methods of Protein Microcharacterization

, J. E. Silver ed., Humana Press, Clifton N.J. 155-194 (1986)); acylation (Tarr, supra); chemical coupling to an appropriate carrier (Mishell and Shiigi, eds,

Selected Methods in Cellular Immunology

, WH Freeman, San Francisco, Calif. (1980), U.S. Pat. No. 4,939,239; or mild formalin treatment (Marsh, (1971)

Int. Arch. of Allergy and Appl. Immunol

., 41: 199-215).

To facilitate purification and potentially increase solubility of an

A. baumannii

protein or peptide, it is possible to add an amino acid fusion moiety to the peptide backbone. For example, hexa-histidine can be added to the protein for purification by immobilized metal ion affinity chromatography (Hochuli, E. et al., (1988)

Bio/Technology

, 6: 1321-1325). In addition, to facilitate isolation of peptides free of irrelevant sequences, specific endoprotease cleavage sites can be introduced between the sequences of the fusion moiety and the peptide.

To potentially aid proper antigen processing of epitopes within an

A. baumannii

polypeptide, canonical protease sensitive sites can be engineered between regions, each comprising at least one epitope via recombinant or synthetic methods. For example, charged amino acid pairs, such as KK or RR, can be introduced between regions within a protein or fragment during recombinant construction thereof. The resulting peptide can be rendered sensitive to cleavage by cathepsin and/or other trypsin-like enzymes which would generate portions of the protein containing one or more epitopes. In addition, such charged amino acid residues can result in an increase in the solubility of the peptide.

Primary Methods for Screening Polypeptides and Analogs

Various techniques are known in the art for screening generated mutant gene products. Techniques for screening large gene libraries often include cloning the gene library into replicable expression vectors, transforming appropriate cells with the resulting library of vectors, and expressing the genes under conditions in which detection of a desired activity, e.g., in this case, binding to

A. baumannii

polypeptide or an interacting protein, facilitates relatively easy isolation of the vector encoding the gene whose product was detected. Each of the techniques described below is amenable to high through-put analysis for screening large numbers of sequences created, e.g., by random mutagenesis techniques.

Two Hybrid Systems

Two hybrid assays such as the system described below (as with the other screening methods described herein), can be used to identify polypeptides, e.g., fragments or analogs of a naturally-occurring

A. baumannii

polypeptide, e.g., of cellular proteins, or of randomly generated polypeptides which bind to an

A. baumannii

protein. (The

A. baumannii

domain is used as the bait protein and the library of variants are expressed as prey fusion proteins.) In an analogous fashion, a two hybrid assay (as with the other screening methods described herein), can be used to find polypeptides which bind an

A. baumannii

polypeptide.

Display Libraries

In one approach to screening assays, the Acinetobacter peptides are displayed on the surface of a cell or viral particle, and the ability of particular cells or viral particles to bind an appropriate receptor protein via the displayed product is detected in a “panning assay”. For example, the gene library can be cloned into the gene for a surface membrane protein of a bacterial cell, and the resulting fusion protein detected by panning (Ladner et al., WO 88/06630; Fuchs et al. (1991)

Bio/Technology

9:1370-1371; and Goward et al. (1992)

TIBS

18:136-140). In a similar fashion, a detectably labeled ligar can be used to score for potentially functional peptide homologs. Fluorescently labele ligands, e.g., receptors, can be used to detect homologs which retain ligand-binding activity. The use of fluorescently labeled ligands, allows cells to be visually inspected and separated under a fluorescence microscope, or, where the morphology of the cell permits, to be separated by a fluorescence-activated cell sorter.

A gene library can be expressed as a fusion protein on the surface of a viral particle. For instance, in the filamentous phage system, foreign peptide sequences can be expressed on the surface of infectious phage, thereby conferring two significant benefits. First, since these phage can be applied to affinity matrices at concentrations well over 10

13

phage per milliliter, a large number of phage can be screened at one time. Second, since each infectious phage displays a gene product on its surface, if a particular phage is recovered from an affinity matrix in low yield, the phage can be amplified by another round of infection. The group of almost identical

E. coli

filamentous phages, M13, fd., and fl, are most often used in phage display libraries. Either of the phage gIII or gVIII coat proteins can be used to generate fusion proteins without disrupting the ultimate packaging of the viral particle. Foreign epitopes can be expressed at the NH

2

-terminal end of pIII and phage bearing such epitopes recovered from a large excess of phage lacking this epitope (Ladner et al. PCT publication WO 90/02909; Garrard et al., PCT publication WO 92/09690; Marks et al. (1992)

J. Biol. Chem

. 267:16007-16010; Griffiths et al. (1993)

EMBO J

12:725-734; Clackson et al. (1991)

Nature

352:624-628; and Barbas et al. (1992)

PNAS

89:4457-4461).

A common approach uses the maltose receptor of

E. coli

(the outer membrane protein, LamB) as a peptide fusion partner (Charbit et al. (1986)

EMBO

5, 3029-3037). Oligonucleotides have been inserted into plasmids encoding the LamB gene to produce peptides fused into one of the extracellular loops of the protein. These peptides are available for binding to ligands, e.g., to antibodies, and can elicit an immune response when the cells are administered to animals. Other cell surface proteins, e.g., OmpA (Schorr et al. (1991)

Vaccines

91, pp. 387-392), PhoE (Agterberg, et al. (1990)

Gene

88, 37-45), and PAL (Fuchs et al. (1991)

Bio/Tech

9, 1369-1372), as well as large bacterial surface structures have served as vehicles for peptide display. Peptides can be fused to pilin, a protein which polymerizes to form the pilus-a conduit for interbacterial exchange of genetic information (Thiry et al. (1989)

Appl. Environ. Microbiol

. 55, 984-993). Because of its role in interacting with other cells, the pilus provides a useful support for the presentation of peptides to the extracellular environment. Another large surface structure used for peptide display is the bacterial motive organ, the flagellum. Fusion of peptides to the subunit protein flagellin offers a dense array of many peptide copies on the host cells (Kuwajima et al. (1988)

Bio/Tech

. 6, 1080-1083). Surface proteins of other bacterial species have also served as peptide fusion partners. Examples include the Staphylococcus protein A and the outer membrane IgA protease of Neisseria (Hansson et al. (1992)

J. Bacteriol

. 174, 4239-4245 and Klauser et al. (1990)

EMBO J

. 9, 1991-1999).

In the filamentous phage systems and the LamB system described above, the physical link between the peptide and its encoding DNA occurs by the containment of the DNA within a particle (cell or phage) that carries the peptide on its surface. Capturing the peptide captures the particle and the DNA within. An alternative scheme uses the DNA-binding protein LacI to form a link between peptide and DNA (Cull et al. (1992)

PNAS USA

89:1865-1869). This system uses a plasmid containing the LacI gene with an oligonucleotide cloning site at its 3′-end. Under the controlled induction by arabinose, a LacI-peptide fusion protein is produced. This fusion retains the natural ability of LacI to bind to a short DNA sequence known as LacO operator (LacO). By installing two copies of LacO on the expression plasmid, the LacI-peptide fusion binds tightly to the plasmid that encoded it. Because the plasmids in each cell contain only a single oligonucleotide sequence and each cell expresses only a single peptide sequence, the peptides become specifically and stablely associated with the DNA sequence that directed its synthesis. The cells of the library are gently lysed and the peptide-DNA complexes are exposed to a matrix of immobilized receptor to recover the complexes containing active peptides. The associated plasmid DNA is then reintroduced into cells for amplification and DNA sequencing to determine the identity of the peptide ligands. As a demonstration of the practical utility of the method, a large random library of dodecapeptides was made and selected on a monoclonal antibody raised against the opioid peptide dynorphin B. A cohort of peptides was recovered, all related by a consensus sequence corresponding to a six-residue portion of dynorphin B. (Cull et al. (1992)

Proc. Natl. Acad. Sci. U.S.A

. 89-1869).

This scheme, sometimes referred to as peptides-on-plasmids, differs in two important ways from the phage display methods. First, the peptides are attached to the C-terminus of the fusion protein, resulting in the display of the library members as peptides having free carboxy termini. Both of the filamentous phage coat proteins, pIII and pVIII, are anchored to the phage through their C-termini, and the guest peptides are placed into the outward-extending N-terminal domains. In some designs, the phage-displayed peptides are presented right at the amino terminus of the fusion protein. (Cwirla, et al. (1990)

Proc. Natl. Acad Sci. U.S.A

. 87, 6378-6382) A second difference is the set of biological biases affecting the population of peptides actually present in the libraries. The LacI fusion molecules are confined to the cytoplasm of the host cells. The phage coat fusions are exposed briefly to the cytoplasm during translation but are rapidly secreted through the inner membrane into the periplasmic compartment, remaining anchored in the membrane by their C-terminal hydrophobic domains, with the N-termini, containing the peptides, protruding into the periplasm while awaiting assembly into phage particles. The peptides in the LacI and phage libraries may differ significantly as a result of their exposure to different proteolytic activities. The phage coat proteins require transport across the inner membrane and signal peptidase processing as a prelude to incorporation into phage. Certain peptides exert a deleterious effect on these processes and are underrepresented in the libraries (Gallop et al. (1994)

J. Med. Chem

. 37(9):1233-1251). These particular biases are not a factor in the LacI display system.

The number of small peptides available in recombinant random libraries is enormous. Libraries of 10

7

-10

9

independent clones are routinely prepared. Libraries as large as 10

11

recombinants have been created, but this size approaches the practical limit for clone libraries. This limitation in library size occurs at the step of transforming the DNA containing randomized segments into the host bacterial cells. To circumvent this limitation, an in vitro system based on the display of nascent peptides in polysome complexes has recently been developed. This display library method has the potential of producing libraries 3-6 orders of magnitude larger than the currently available phage/phagemid or plasmid libraries. Furthermore, the construction of the libraries, expression of the peptides, and screening, is done in an entirely cell-free format.

In one application of this method (Gallop et al. (1994)

J. Med. Chem.

37(9):1233-1251), a molecular DNA library encoding 10

12

decapeptides was constructed and the library expressed in an

E. coli

S30 in vitro coupled transcription/translation system. Conditions were chosen to stall the ribosomes on the mRNA, causing the accumulation of a substantial proportion of the RNA in polysomes and yielding complexes containing nascent peptides still linked to their encoding RNA. The polysomes are sufficiently robust to be affinity purified on immobilized receptors in much the same way as the more conventional recombinant peptide display libraries are screened. RNA from the bound complexes is recovered, converted to cDNA, and amplified by PCR to produce a template for the next round of synthesis and screening. The polysome display method can be coupled to the phage display system. Following several rounds of screening, cDNA from the enriched pool of polysomes was cloned into a phagemid vector. This vector serves as both a peptide expression vector, displaying peptides fused to the coat proteins, and as a DNA sequencing vector for peptide identification. By expressing the polysome-derived peptides on phage, one can either continue the affinity selection procedure in this format or assay the peptides on individual clones for binding activity in a phage ELISA, or for binding specificity in a completion phage ELISA (Barret, et al. (1992)

Anal. Biochem

204,357-364). To identify the sequences of the active peptides one sequences the DNA produced by the phagemid host.

Secondary Screening of Polypeptides and Analogs

The high through-put assays described above can be followed by secondary screens in order to identify further biological activities which will, e.g., allow one skilled in the art to differentiate agonists from antagonists. The type of a secondary screen used will depend on the desired activity that needs to be tested. For example, an assay can be developed in which the ability to inhibit an interaction between a protein of interest and its respective ligand can be used to identify antagonists from a group of peptide fragments isolated though one of the primary screens described above.

Therefore, methods for generating fragments and analogs and testing them for activity are known in the art. Once the core sequence of interest is identified, it is routine for one skilled in the art to obtain analogs and fragments.

Peptide Mimetics of

A. Baumannii

Polypeptides

The invention also provides for reduction of the protein binding domains of the subject

A. baumannii

polypeptides to generate mimetics, e.g. peptide or non-peptide agents. The peptide mimetics are able to disrupt binding of a polypeptide to its counter ligand, e.g., in the case of an

A. baumannii

polypeptide binding to a naturally occurring ligand. The critical residues of a subject

A. baumannii

polypeptide which are involved in molecular recognition of a polypeptide can be determined and used to generate

A. baumannii

-derived peptidomimetics which competitively or noncompetitively inhibit binding of the

A. baumannii

polypeptide with an interacting polypeptide (see, for example, European patent applications EP-412,762A and EP-B31,080A).

For example, scanning mutagenesis can be used to map the amino acid residues of a particular

A. baumannii

polypeptide involved in binding an interacting polypeptide, peptidomimetic compounds (e.g. diazepine or isoquinoline derivatives) can be generated which mimic those residues in binding to an interacting polypeptide, and which therefore can inhibit binding of an

A. baumannii

polypeptide to an interacting polypeptide and thereby interfere with the function of

A. baumannii

polypeptide. For instance, non-hydrolyzable peptide analogs of such residues can be generated using benzodiazepine (e.g., see Freidinger et al. in

Peptides: Chemistry and Biology

, G. R. Marshall ed., ESCOM Publisher: Leiden, Netherlands, 1988), azepine (e.g., see Huffinan et al. in

Peptides: Chemistry and Biology

, G. R. Marshall ed., ESCOM Publisher: Leiden, Netherlands, 1988), substituted gama lactam rings (Garvey et al. in

Peptides: Chemistry and Biology

, G. R. Marshall ed., ESCOM Publisher: Leiden, Netherlands, 1988), keto-methylene pseudopeptides (Ewenson et al. (1986)

J Med Chem

29:295; and Ewenson et al. in

Peptides: Structure and Function

(Proceedings of the 9th American Peptide Symposium) Pierce Chemical Co. Rockland, Ill., 1985), b-turn dipeptide cores (Nagai et al. (1985)

Tetrahedron Lett

26:647; and Sato et al. (1986)

J Chem Soc Perkin Trans

1:1231), and b-aminoalcohols (Gordon et al. (1985)

Biochem Biophys Res Commun

126:419; and et al. (1986)

Biochem Biophys Res Commun

134:71).

Vaccine Formulations for

A. Baumannii

Nucleic Acids and Polypeptides

This invention also features vaccine compositions for protection against infection by

A. baumannii

or for treatment of

A. baumannii

infection. In one embodiment, the vaccine compositions contain one or more immunogenic components such as a surface protein from

A. baumannii

, or portion thereof, and a pharmaceutically acceptable carrier. Nucleic acids within the scope of the invention are exemplified by the nucleic acids of the invention contained in the Sequence Listing which encode

A. baumannii

surface proteins. Any nucleic acid encoding an immunogenic

A. baumannii

protein, or portion thereof, which is capable of expression in a cell, can be used in the present invention. These vaccines have therapeutic and prophylactic utilities.

One aspect of the invention provides a vaccine composition for protection against infection by

A. baumannii

which contains at least one immunogenic fragment of an

A. baumannii

protein and a pharmaceutically acceptable carrier. Preferred fragments include peptides of at least about 10 amino acid residues in length, preferably about 10-20 amino acid residues in length, and more preferably about 12-16 amino acid residues in length.

Immunogenic components of the invention can be obtained, for example, by screening polypeptides recombinantly produced from the corresponding fragment of the nucleic acid encoding the full-length

A. baumannii

protein. In addition, fragments can be chemically synthesized using techniques known in the art such as conventional Merrifield solid phase f-Moc or t-Boc chemistry.

In one embodiment, immunogenic components are identified by the ability of the peptide to stimulate T cells. Peptides which stimulate T cells, as determined by, for example, T cell proliferation or cytokine secretion are defined herein as comprising at least one T cell epitope. T cell epitopes are believed to be involved in initiation and perpetuation of the immune response to the protein allergen which is responsible for the clinical symptoms of allergy. These T cell epitopes are thought to trigger early events at the level of the T helper cell by binding to an appropriate HLA molecule on the surface of an antigen presenting cell, thereby stimulating the T cell subpopulation with the relevant T cell receptor for the epitope. These events lead to T cell proliferation, lymphokine secretion, local inflammatory reactions, recruitment of additional immune cells to the site of antigen/T cell interaction, and activation of the B cell cascade, leading to the production of antibodies. A T cell epitope is the basic element, or smallest unit of recognition by a T cell receptor, where the epitope comprises amino acids essential to receptor recognition (e.g., approximately 6 or 7 amino acid residues). Amino acid sequences which mimic those of the T cell epitopes are within the scope of this invention.

Screening immunogenic components can be accomplished using one or more of several different assays. For example, in vitro, peptide T cell stimulatory activity is as saved by contacting a peptide known or suspected of being immunogenic with an antigen presenting cell which presents appropriate MHC molecules in a T cell culture. Presentation of an immunogenic

A. baumannii

peptide in association with appropriate MHC molecules to T cells in conjunction with the necessary co-stimulation has the effect of transmitting a signal to the T cell that induces the production of increased levels of cytokines, particularly of interleukin-2 and interleukin-4. The culture supernatant can be obtained and assayed for interleukin-2 or other known cytokines. For example, any one of several conventional assays for interleukin-2 can be employed, such as the assay described in

Proc. Natl. Acad. Sci USA

, 86: 1333 (1989) the pertinent portions of which are incorporated herein by reference. A kit for an assay for the production of interferon is also available from Genzyme Corporation (Cambridge, Mass.).

Alternatively, a common assay for T cell proliferation entails measuring tritiated thymidine incorporation. The proliferation of T cells can be measured in vitro by determining the amount of

3

H-labeled thymidine incorporated into the replicating DNA of cultured cells. Therefore, the rate of DNA synthesis and, in turn, the rate of cell division can be quantified.

Vaccine compositions of the invention containing immunogenic components (e.g.,

A. baumannii

polypeptide or fragment thereof or nucleic acid encoding an

A. baumannii

polypeptide or fragment thereof) preferably include a pharmaceutically acceptable carrier. The term “pharmaceutically acceptable carrier” refers to a carrier that does not cause an allergic reaction or other untoward effect in patients to whom it is administered. Suitable pharmaceutically acceptable carriers include, for example, one or more of water, saline, phosphate buffered saline, dextrose, glycerol, ethanol and the like, as well as combinations thereof. Pharmaceutically acceptable carriers may further comprise minor amounts of auxiliary substances such as wetting or emulsifying agents, preservatives or buffers, which enhance the shelf life or effectiveness of the antibody. For vaccines of the invention containing

A. baumannii

polypeptides, the polypeptide is co-administered with a suitable adjuvant.

It will be apparent to those of skill in the art that the therapeutically effective amount of DNA or protein of this invention will depend, inter alia, upon the administration schedule, the unit dose of antibody administered, whether the protein or DNA is administered in combination with other therapeutic agents, the immune status and health of the patient, and the therapeutic activity of the particular protein or DNA.

Vaccine compositions are conventionally administered parenterally, e.g., by injection, either subcutaneously or intramuscularly. Methods for intramuscular immunization are described by Wolff et al. (1990)

Science

247: 1465-1468 and by Sedegah et al. (1994)

Immunology

91: 9866-9870. Other modes of administration include oral and pulmonary formulations, suppositories, and transdermal applications. Oral immunization is preferred over parenteral methods for inducing protection against infection by

A. baumannii

. Cain et. al. (1993)

Vaccine

11: 637-642. Oral formulations include such normally employed excipients as, for example, pharmaceutical grades of mannitol, lactose, starch, magnesium stearate, sodium saccharine, cellulose, magnesium carbonate, and the like.

The vaccine compositions of the invention can include an adjuvant, including, but not limited to aluminum hydroxide; N-acetyl-muramyl-L-threonyl-D-isoglutamine (thr-MDP); N-acetyl-nor-muramyl-L-alanyl-D-isoglutamine (CGP 11637, referred to as nor-MDP); N-acetylmuramyl-L-alanyl-D-isoglutaminyl-L-alanine-2-(1′-2′-dipalmitoyl-sn-glycero-3-hydroxyphos-phoryloxy)-ethylamine (CGP 19835A. referred to a MTP-PE); RIBI, which contains three components from bacteria; monophosphoryl lipid A; trehalose dimycoloate; cell wall skeleton (MPL+TDM+CWS) in a 2% squalene/Tween 80 emulsion; and cholera toxin. Others which may be used are non-toxic derivatives of cholera toxin, including its B subunit, and/or conjugates or genetically engineered fusions of the

A. baumannii

polypeptide with cholera toxin or its B subunit, procholeragenoid, fungal polysaccharides, including schizophyllan, muramyl dipeptide, muramyl dipeptide derivatives, phorbol esters, labile toxin of

E. coli

, non-

A. baumannii

bacterial lysates, block polymers or saponins.

Other suitable delivery methods include biodegradable microcapsules or immuno-stimulating complexes (ISCOMs), cochleates, or liposomes, genetically engineered attenuated live vectors such as viruses or bacteria, and recombinant (chimeric) virus-like particles, e.g., bluetongue. The amount of adjuvant employed will depend on the type of adjuvant used. For example, when the mucosal adjuvant is cholera toxin, it is suitably used in an amount of 5 mg to 50 mg, for example 10 mg to 35 mg. When used in the form of microcapsules, the amount used will depend on the amount employed in the matrix of the microcapsule to achieve the desired dosage. The determination of this amount is within the skill of a person of ordinary skill in the art.

Carrier systems in humans may include enteric release capsules protecting the antigen from the acidic environment of the stomach, and including

A. baumannii

polypeptide in an insoluble form as fusion proteins. Suitable carriers for the vaccines of the invention are enteric coated capsules and polylactide-glycolide microspheres. Suitable diluents are 0.2 N NaHCO

3

and/or saline.

Vaccines of the invention can be administered as a primary prophylactic agent in adults or in children, as a secondary prevention, after successful eradication of

A. baumannii

in an infected host, or as a therapeutic agent in the aim to induce an immune response in a susceptible host to prevent infection by

A. baumannii

. The vaccines of the invention are administered in amounts readily determined by persons of ordinary skill in the art. Thus, for adults a suitable dosage will be in the range of 10 mg to 10 g, preferably 10 mg to 100 mg. A suitable dosage for adults will also be in the range of 5 mg to 500 mg. Similar dosage ranges will be applicable for children. Those skilled in the art will recognize that the optimal dose may be more or less depending upon the patient's body weight, disease, the route of administration, and other factors. Those skilled in the art will also recognize that appropriate dosage levels can be obtained based on results with known oral vaccines such as, for example, a vaccine based on an

E. coli

lysate (6 mg dose daily up to total of 540 mg) and with an enterotoxigenic

E. coli

purified antigen (4 doses of 1 mg) (Schulman et al.,

J. Urol

. 150:917-921 (1993); Boedecker et al.,

American Gastroenterological Assoc

. 999:A-222 (1993)). The number of doses will depend upon the disease, the formulation, and efficacy data from clinical trials. Without intending any limitation as to the course of treatment, the treatment can be administered over 3 to 8 doses for a primary immunization schedule over 1 month (Boedeker,

American Gastroenterological Assoc

. 888:A-222 (1993)).

In a preferred embodiment, a vaccine composition of the invention can be based on a killed whole

E. coli

preparation with an immunogenic fragment of an

A. baumannii

protein of the invention expressed on its surface or it can be based on an

E. coli

lysate, wherein the killed

E. coli

acts as a carrier or an adjuvant.

It will be apparent to those skilled in the art that some of the vaccine compositions of the invention are useful only for preventing

A. baumannii

infection, some are useful only for treating

A. baumannii

infection, and some are useful for both preventing and treating

A. baumannii

infection. In a preferred embodiment, the vaccine composition of the invention provides protection against

A. baumannii

infection by stimulating humoral and/or cell-mediated immunity against

A. baumannii

. It should be understood that amelioration of any of the symptoms of

A. baumannii

infection is a desirable clinical goal, including a lessening of the dosage of medication used to treat

A. baumannii

-caused disease, or an increase in the production of antibodies in the serum or mucous of patients.

Antibodies Reactive with

A. Baumannii

Polypeptides

The invention also includes antibodies specifically reactive with the subject

A. baumannii

polypeptide. Anti-protein/anti-peptide antisera or monoclonal antibodies can be made by standard protocols (See, for example,

Antibodies: A Laboralory Manual

ed. by Harlow and Lane (Cold Spring Harbor Press: 1988)). A mammal such as a mouse, a hamster or rabbit can be immunized with an immunogenic form of the peptide. Techniques for conferring immunogenicity on a protein or peptide include conjugation to carriers or other techniques well known in the art. An immunogenic portion of the subject

A. baumannii

polypeptide can be administered in the presence of adjuvant. The progress of immunization can be monitored by detection of antibody liters in plasma or serum. Standard ELISA or other immunoassays can be used with the immunogen as antigen to assess the levels of antibodies.

In a preferred embodiment, the subject antibodies are immunospecific for antigenic determinants of the

A. baumannii

polypeptides of the invention, e.g. antigenic determinants of a polypeptide of the invention contained in the Sequence Listing, or a closely related human or non-human mammalian homolog (e.g. 90% homologous, more preferably at least about 95% homologous). In yet a further preferred embodiment of the invention, the anti-

A. baumannii

antibodies do not substantially cross react (i.e., react specifically) with a protein which is for example, less than 80% percent homologous to a sequence of the invention contained in the Sequence Listing. By “not substantially cross react”, it is meant that the antibody has a binding affinity for a non-homologous protein which is less than 10 percent, more preferably less than 5 percent, and even more preferably less than 1 percent, of the binding affinity for a protein of the invention contained in the Sequence Listing. In a most preferred embodiment, there is no cross-reactivity between bacterial and mammalian antigens.

The term antibody as used herein is intended to include fragments thereof which are also specifically reactive with

A. baumannii

polypeptides. Antibodies can be fragmented using conventional techniques and the fragments screened for utility in the same manner as described above for whole antibodies. For example. F(ab′)

2

fragments can be generated by treating antibody with pepsin. The resulting F(ab′)

2

fragment can be treated to reduce disulfide bridges to produce Fab′ fragments. The antibody of the invention is further intended to include bispecific and chimeric molecules having an anti-

A. baumannii

portion.

Both monoclonal and polyclonal antibodies (Ab) directed against

A. baumannii

polypeptides or

A. baumannii

polypeptide variants, and antibody fragments such as Fab′ and F(ab′)

2

, can be used to block the action of

A. baumannii

polypeptide and allow the study of the role of a particular

A. baumannii

polypeptide of the invention in aberrant or unwanted intracellular signaling, as well as the normal cellular function of the

A. baumannii

and by microinjection of anti-

A. baumannii

polypeptide antibodies of the present invention.

Antibodies which specifically bind

A. baumannii

epitopes can also be used in immunohistochemical staining of tissue samples in order to evaluate the abundance and pattern of expression of

A. baumannii

antigens. Anti-

A. baumannii

polypeptide antibodies can be used diagnostically in immuno-precipitation and immuno-blotting to detect and evaluate

A. baumannii

levels in tissue or bodily fluid as part of a clinical testing procedure. Likewise, the ability to monitor

A. baumannii

polypeptide levels in an individual can allow determination of the efficacy of a given treatment regimen for an individual afflicted with such a disorder. The level of an

A. baumannii

polypeptide can be measured in cells found in bodily fluid, such as in urine samples or can be measured in tissue, such as produced by gastric biopsy. Diagnostic assays using anti-

A. baumannii

antibodies can include, for example, immunoassays designed to aid in early diagnosis of

A. baumannii

infections. The present invention can also be used as a method of detecting antibodies contained in samples from individuals infected by this bacterium using specific

A. baumannii

antigens.

Another application of anti-

A. baumannii

polypeptide antibodies of the invention is in the immunological screening of cDNA libraries constructed in expression vectors such as λgt11, λgt18-23, λZAP, and λORF8. Messenger libraries of this type, having coding sequences inserted in the correct reading frame and orientation, can produce fusion proteins. For instance, λgt11 will produce fusion proteins whose amino termini consist of β-galactosidase amino acid sequences and whose carboxy termini consist of a foreign polypeptide. Antigenic epitopes of a subject

A. baumannii

polypeptide can then be detected with antibodies, as, for example, reacting nitrocellulose filters lifted from infected plates with anti-

A. baumannii

polypeptide antibodies. Phage, scored by this assay, can then be isolated from the infected plate. Thus, the presence of

A. baumannii

gene homologs can be detected and cloned from other species, and alternate isoforms (including splicing variants) can be detected and cloned.

Kits Containing Nucleic Acids Polypeptides or Antibodies of the Invention

The nucleic acid, polypeptides and antibodies of the invention can be combined with other reagents and articles to form kits. Kits for diagnostic purposes typically comprise the nucleic acid, polypeptides or antibodies in vials or other suitable vessels. Kits typically comprise other reagents for performing hybridization reactions, polymerase chain reactions (PCR), or for reconstitution of lyophilized components, such as aqueous media, salts, buffers, and the like. Kits may also comprise reagents for sample processing such as detergents, chaotropic salts and the like. Kits may also comprise immobilization means such as particles, supports, wells, dipsticks and the like. Kits may also comprise labeling means such as dyes, developing reagents, radioisotopes, fluorescent agents, luminescent or chemiluminescent agents, enzymes, intercalating agents and the like. With the nucleic acid and amino acid sequence information provided herein, individuals skilled in art can readily assemble kits to serve their particular purpose. Kits further can include instructions for use.

Bio Chip Technology

The nucleic acid sequence of the present invention may be used to detect

A. baumannii

or other species of Acinetobacter acid sequence using bio chip technology. Bio chips containing arrays of nucleic acid sequence can also be used to measure expression of genes of

A. baumannii

or other species of Acinetobacter. For example, to diagnose a patient with a

A. baumannii

or other Acinetobacter infection, a sample from a human or animal can be used as a probe on a bio chip containing an array of nucleic acid sequence from the present invention. In addition, a sample from a disease state can be compared to a sample from a non-disease state which would help identify a gene that is up-regulated or expressed in the disease state. This would provide valuable insight as to the mechanism by which the disease manifests. Changes in gene expression can also be used to identify critical pathways involved in drug transport or metabolism, and may enable the identification of novel targets involved in virulence or host cell interactions involved in maintenance of an infection. Procedures using such techniques have been described by Brown et al., 1995

, Science

270: 467-470.

Bio chips can also be used to monitor the genetic changes of potential therapeutic compounds including, deletions, insertions or mismatches. Once the therapeutic is added to the patient, changes to the genetic sequence can be evaluated for its efficacy. In addition, the nucleic acid sequence of the present invention can be used to determine essential genes in cell cycling. As described in Iyer et al., 1999 (

Science

, 283:83-87) genes essential in the cell cycle can be identified using bio chips. Furthermore, the present invention provides nucleic acid sequence which can be used with bio chip technology to understand regulatory networks in bacteria, measure the response to environmental signals or drugs as in drug screening, and study virulence induction. (Mons et al., 1998

, Nature Biotechnology

, 16: 45-48. Patents teaching this technology include U.S. Pat. Nos. 5,445,934, 5,744,305, and 5,800,992.

Drug Screening Assays Using

A. Baumannii

Polypeptides

By making available purified and recombinant

A. baumannii

polypeptides, the present invention provides assays which can be used to screen for drugs which are either agionists or antagonists of the normal cellular function, in this case, of the subject

A. baumannii

polypeptides, or of their role in intracellular signaling. Such inhibitors or potentiators may be useful as new therapeutic agents to combat

A. baumannii

infections in humans. A variety of assay formats will suffice and, in light of the present inventions, will be comprehended by the person skilled in the art.

In many drug screening programs which test libraries of compounds and natural extracts, high throughput assays are desirable in order to maximize the number of compounds surveyed in a given period of time. Assays which are performed in cell-free systems, such as may be derived with purified or semi-purified proteins, are often preferred as “primary” screens in that they can be generated to permit rapid development and relatively easy detection of an alteration in a molecular target which is mediated by a test compound. Moreover, the effects of cellular toxicity and/or bioavailability of the test compound can be generally ignored in the in vitro system, the assay instead being focused primarily on the effect of the drug on the molecular target as may be manifest in an alteration of binding affinity with other proteins or change in enzymatic properties of the molecular target. Accordingly, in an exemplary screening assay of the present invention, the compound of interest is contacted with an isolated and purified

A. baumannii

polypeptide.

Screening assays can be constructed in vitro with a purified

A. baumannii

polypeptide or fragment thereof, such as an

A. baumannii

polypeptide having enzymatic activity, such that the activity of the polypeptide produces a detectable reaction product. The efficacy of the compound can be assessed by generating dose response curves from data obtained using various concentrations of the test compound. Moreover, a control assay can also be performed to provide a baseline for comparison. Suitable products include those with distinctive absorption, fluorescence, or chemi-luminescence properties, for example, because detection may be easily automated. A variety of synthetic or naturally occurring compounds can be tested in the assay to identify those which inhibit or potentiate the activity of the

A. baumannii

polypeptide. Some of these active compounds may directly, or with chemical alterations to promote membrane permeability or solubility, also inhibit or potentiate the same activity (e.g., enzymatic activity) in whole, live

A. baumannii

cells.

Overexpression Assays

Overexpression assays are based on the premise that overproduction of a protein would lead to a higher level of resistance to compounds that selectively interfere with the function of that protein. Overexpression assays may be used to identify compounds that interfere with the function of virtually any type of protein, including without limitation enzymes, receptors, DNA- or RNA-binding proteins, or any proteins that are directly or indirectly involved in regulating cell growth.

Typically, two bacterial strains are constructed. One contains a single copy of the gene of interest, and a second contains several copies of the same gene. Identification of useful inhibitory compounds of this type of assay is based on a comparison of the activity of a test compound in inhibiting growth and/or viability of the two strains. The method involves constructing a nucleic acid vector that directs high level expression of a particular target nucleic acid. The vectors are then transformed into host cells in single or multiple copies to produce strains that express low to moderate and high levels of protein encoding by the target sequence (strain A and B, respectively). Nucleic acid comprising sequences encoding the target gene can, of course, be directly integrated into the host cell.

Large numbers of compounds (or crude substances which may contain active compounds) are screened for their effect on the growth of the two strains. Agents which interfere with an unrelated target equally inhibit the growth of both strains. Agents which interfere with the function of the target at high concentration should inhibit the growth of both strains. It should be possible, however, to titrate out the inhibitory effect of the compound in the overexpressing strain. That is, if the compound is affecting the particular target that is being tested, it should be possible to inhibit the growth of strain A at a concentration of the compound that allows strain B to grow.

Alternatively, a bacterial strain is constructed that contains the gene of interest under the control of an inducible promoter. Identification of useful inhibitory agents using this type of assay is based on a comparison of the activity of a test compound in inhibiting growth and/or viability of this strain under both inducing and non-inducing conditions. The method involves constructing a nucleic acid vector that directs high-level expression of a particular target nucleic acid. The vector is then transformed into host cells that are grown under both non-inducing and inducing conditions (conditions A and B, respectively).

Large numbers of compounds (or crude substances which may contain active compounds) are screened for their effect on growth under these two conditions. Agents that interfere with the function of the target should inhibit growth under both conditions. It should be possible, however, to titrate out the inhibitory effect of the compound in the overexpressing strain. That is, if the compound is affecting the particular target that is being tested, it should be possible to inhibit growth under condition A at a concentration that allows the strain to grow under condition B.

Ligand-binding Assays

Many of the targets according to the invention have functions that have not yet been identified. Ligand-binding assays are useful to identify inhibitor compounds that interfere with the function of a particular target, even when that function is unknown. These assays are designed to detect binding of test compounds to particular targets. The detection may involve direct measurement of binding. Alternatively, indirect indications of binding may involve stabilization of protein structure or disruption of a biological function. Non-limiting examples of useful ligand-binding assays are detailed below.

A useful method for the detection and isolation of binding proteins is the Biomolecular Interaction Assay (BIAcore) system developed by Pharmacia Biosensor and described in the manufacturer's protocol (LKB Pharmacia, Sweden). The BIAcore system uses an affinity purified anti-GST antibody to immobilize GST-fusion proteins onto a sensor chip. The sensor utilizes surface plasmon resonance which is an optical phenomenon that detects changes in refractive indices. In accordance with the practice of the invention, a protein of interest is coated onto a chip and test compounds are passed over the chip. Binding is detected by a change in the refractive index (surface plasmon resonance).

A different type of ligand-binding assay involves scintillation proximity assays (SPA; described in U.S. Pat. No. 4,568,649).

Another type of ligand binding assay, also undergoing development, is based on the fact that proteins containing mitochondrial targeting signals are imported into isolated mitochondria in vitro (Hurt et al., 1985

, Embo J

. 4:2061-2068; Eilers and Schatz,

Nature

, 1986, 322:228-231). In a mitochondrial import assay, expression vectors are constructed in which nucleic acids encoding particular target proteins are inserted downstream of sequences encoding mitochondrial import signals. The chimeric proteins are synthesized and tested for their ability to be imported into isolated mitochondria in the absence and presence of test compounds. A test compound that binds to the target protein should inhibit its uptake into isolated mitochondria in vitro.

Another ligand-binding assay is the yeast two-hybrid system (Fields and Song, 1989

, Nature

340:245-246). The yeast two-hybrid system takes advantage of the properties of the GAL4 protein of the yeast

Saccharomyces cerevisiae

. The GAL4 protein is a transcriptional activator required for the expression of genes encoding enzymes of galactose utilization. This protein consists of two separable and functionally essential domains: an N-terminal domain which binds to specific DNA sequences (UASG); and a C-terminal domain containing acidic regions, which is necessary to activate transcription. The native GAL4 protein, containing both domains, is a potent activator of transcription when yeast are grown on galactose media. The N-terminal domain binds to DNA in a sequence-specific manner but is unable to activate transcription. The C-terminal domain contains the activating regions but cannot activate transcription because it fails to be localized to UAS

G

. In the two-hybrid system, a system of two hybrid proteins containing parts of GAL4: (1) a GAL4 DNA-binding domain fused to a protein ‘X’ and (2) a GAL4 activation region fused to a protein ‘Y’. If X and Y can form a protein-protein complex and reconstitute proximity of the GAL4 domains, transcription of a gene regulated by UAS

G

occurs. Creation of two hybrid proteins, each containing one of the interacting proteins X and Y, allows the activation region of UAS

G

to be brought to its normal site of action.

The binding assay described in Fodor et al., 1991

, Science

251:767-773, which involves testing the binding affinity of test compounds for a plurality of defined polymers synthesized on a solid substrate, may also be useful.

Compounds which bind to the polypeptides of the invention are potentially useful as antibacterial agents for use in therapeutic compositions.

Pharmaceutical formulations suitable for antibacterial therapy comprise the antibacterial agent in conjunction with one or more biologically acceptable carriers. Suitable biologically acceptable carriers include, but are not limited to, phosphate-buffered saline, saline, deionized water, or the like. Preferred biologically acceptable carriers are physiologically or pharmaceutically acceptable carriers.

The antibacterial compositions include an antibacterial effective amount of active agent. Antibacterial effective amounts are those quantities of the antibacterial agents of the present invention that afford prophylactic protection against bacterial infections or which result in amelioration or cure of an existing bacterial infection. This antibacterial effective amount will depend upon the agent, the location and nature of the infection, and the particular host. The amount can be determined by experimentation known in the art, such as by establishing a matrix of dosages and frequencies and comparing a group of experimental units or subjects to each point in the matrix.

The antibacterial active agents or compositions can be formed into dosage unit forms, such as for example, creams, ointments, lotions, powders, liquids, tablets, capsules, suppositories, sprays, aerosols or the like. If the antibacterial composition is formulated into a dosage unit form, the dosage unit form may contain an antibacterial effective amount of active agent. Alternatively, the dosage unit form may include less than such an amount if multiple dosage unit forms or multiple dosages are to be used to administer a total dosage of the active agent. Dosage unit forms can include, in addition, one or more excipient(s), diluent(s), disintegrant(s), lubricant(s), plasticizer(s), colorant(s), dosage vehicle(s), absorption enhancer(s), stabilizer(s), bactericide(s), or the like.

For general information concerning formulations, see, e.g., Gilman et al. (eds.), 1990

, Goodman and Gilman's: The Pharmacological Basis of Therapeutics

, 8th ed., Pergamon Press; and

Remington's Pharmaceutical Sciences

, 17th ed., 1990, Mack Publishing Co., Easton, Pa.; Avis et al. (eds.), 1993

, Pharmaceutical Dosage Forms: Parenteral Medications

, Dekker, New York; Lieberman et al (eds.), 1990

, Pharmaceutical Dosage Forms: Disperse Systems

, Dekker, New York.

The antibacterial agents and compositions of the present invention are useful for preventing or treating

A. baumannii

infections. Infection prevention methods incorporate a prophylactically effective amount of an antibacterial agent or composition. A prophylactically effective amount is an amount effective to prevent

A. baumannii

infection and will depend upon the specific bacterial strain, the agent, and the host. These amounts can be determined experimentally by methods known in the art and as described above.

A. baumannii

infection treatment methods incorporate a therapeutically effective amount of an antibacterial agent or composition. A therapeutically effective amount is an amount sufficient to ameliorate or eliminate the infection. The prophylactically and/or therapeutically effective amounts can be administered in one administration or over repeated administrations. Therapeutic administration can be followed by prophylactic administration, once the initial bacterial infection has been resolved.

The antibacterial agents and compositions can be administered topically or systemically. Topical application is typically achieved by administration of creams, ointments, lotions, or sprays as described above. Systemic administration includes both oral and parental routes. Parental routes include, without limitation, subcutaneous, intramuscular, intraperitoneal, intravenous, transdermal, inhalation and intranasal administration.

EXEMPLIFICATION

Cloning and Sequencing

A. Baumannii

Genomic Sequence

This invention provides nucleotide sequences of the genome of

A. baumannii

which thus comprises a DNA sequence library of

A. baumannii

genomic DNA. The detailed description that follows provides nucleotide sequences of

A. baumannii

, and also describes how the sequences were obtained and how ORFs (Open Reading Frames) and protein-coding sequences can be identified. Also described are methods of using the disclosed

A. baumannii

sequences in methods including diagnostic and therapeutic applications. Furthermore, the library can be used as a database for identification and comparison of medically important sequences in this and other strains of

A. baumannii

as well as other species of Acinetobacter.

Chromosomal DNA from strain 15839 of

A. baumannii

was isolated after Zymolyase digestion, sodium dodecyl sulfate lysis, potassium acetate precipitation, phenol:chloroform extraction and ethanol precipitation (Soll, D. R., T. Srikantha and S. R. Lockhart: Characterizing Developmentally Regulated Genes in

A. baumannii

. In Microbial Genome Methods. K. W. Adolph, editor. CRC Press. New York. p 17-37.). Genomic

A. baumannii

DNA was hydrodynamically sheared in an HPLC and then separated on a standard 1% agarose gel. Fractions corresponding to 2500-3000 bp in length were excised from the gel and purified by the GeneClean procedure (Bio101, Inc.).

The purified DNA fragments were then blunt-ended using T4 DNA polymerase. The healed DNA was then ligated to unique BstXI-linker adapters (5′-GTCTTCACCACGGGG-3′ and 5′-GTGGTGAAGAC-3′ in 100-1000 fold molar excess). These linkers are complimentary to the BstXI-cut pGTC vector, while the overhang is not self-complimentary. Therefore, the linkers will not concatermerize nor will the cut-vector religate itself easily. The linker-adapted inserts were separated from the unincorporated linkers on a 1% agarose gel and purified using GeneClean. The linker-adapted inserts were then ligated to BstXI-cut vector to construct a “shotgun” sublclone libraries.

Only major modifications to the protocols are highlighted. Briefly, the library was then transformed into DH5α competent cells (Gibco/BRL, DH5á transformation protocol). It was assessed by plating onto antibiotic plates containing ampicillin and IPTG/Xgal. The plates were incubated overnight at 37° C. Transformants were then used for plating of clones and picking for sequencing. The cultures were grown overnight at 37° C. DNA was purified using a silica bead DNA preparation (Engelstein, 1996) method. In this manner, 25 μg of DNA was obtained per clone.

These purified DNA samples were then sequenced using primarily ABI dye-terminator chemistry. All subsequent steps were based on sequencing by ABI377 automated DNA sequencing methods. The ABI dye terminator sequence reads were run on ABI377 machines and the data was transferred to UNIX machines following lane tracking of the gels. Base calls and quality scores were determined using the program PHRED (Ewing et al., 1998, Genome Res. 8: 175-185; Ewing and Green, 1998, Genome Res. 8: 685-734). Reads were assembled using PHRAP (P. Green, Abstracts of DOE Human Genome Program Contractor-Grantee Workshop V, January 1996, p. 157) with default program parameters and quality scores. The initial assembly was done at 8.25 fold coverage and yielded 29 ordered contigs.

Finishing can follow the initial assembly. Missing mates (sequences from clones that only gave reads from one end of the Acinetobacter DNA inserted in the plasmid) can be identified and sequenced with ABI technology to allow the identification of additional overlapping contigs.

End-sequencing of randomly picked genomic lambda was also performed. Sequencing on a both sides was done for all lambda sequences. The lambda library backbone helped to verify the integrity of the assembly and allowed closure of some of the physical gaps. Primers for walking off the ends of contigs would be selected using pick_primer (a GTC program) near the ends of the clones to facilitate gap closure. These walks can be sequenced using the selected clones and primers. These data are then reassembled with PHRAP. Additional sequencing using PCR-generated templates and screened and/or unscreened lambda templates can be done in addition.

To identify

A. baumannii

polypeptides the complete genomic sequence of

A. baumannii

were analyzed essentially as follows: First, all possible stop-to-stop open reading frames (ORFs) greater than 180 nucleotides in all six reading frames were translated into amino acid sequences. Second, the identified ORFs were analyzed for homology to known (archeabacter, prokaryotic and eukaryotic) protein sequences. Third, the coding potential of non-homologous sequences were evaluated with the program GENEMARK™ (Borodovsky and McIninch, 1993, Comp. Chem. 17:123).

Identification, Cloning and Expression of

A. Baumannii

Nucleic Acids

Expression and purification of the

A. baumannii

polypeptides of the invention can be performed essentially as outlined below.

To facilitate the cloning, expression and purification of membrane and secreted proteins from

A. baumannii

, a gene expression system, such as the pET System (Novagen), for cloning and expression of recombinant proteins in

E. coli

, is selected. Also, a DNA sequence encoding a peptide tag, the His-Tag, is fused to the 3′ end of DNA sequences of interest in order to facilitate purification of the recombinant protein products. The 3′ end is selected for fusion in order to avoid alteration of any 5′ terminal signal sequence.

PCR Amplification and Cloning of Nucleic Acids Containing ORF's Encoding Enzymes

Nucleic acids chosen (for example, from the nucleic acids set forth in SEQ ID NO:1-SEQ ID NO:4126 for cloning from the 15839 strain of

A. baumannii

are prepared for amplification cloning by polymerase chain reaction (PCR). Synthetic oligonucleotide primers specific for the 5′ and 3′ ends of open reading frames (ORFs) are designed and purchased from GibcoBRL Life Technologies (Gaithersburg, Md., USA). All forward primers (specific for the 5′ end of the sequence) are designed to include an NcoI cloning site at the extreme 5′ terminus. These primers are designed to permit initiation of protein translation at a methionine residue followed by a valine residue and the coding sequence for the remainder of the native

A. baumannii

DNA sequence. All reverse primers (specific for the 3′ end of any

A. baumannii

ORF) include EcoRI site at the extreme 5′ terminus to permit cloning of each

A. baumannii

sequence into the reading frame of the pET-28b. The pET-28b vector provides sequence encoding n additional 20 carboxy-terminal amino acids including six histidine residues (at the extreme C-terminus), which comprise the His-Tag.

Genomic DNA prepared from the 15839 strain of

A. baumannii

is used as the source of template DNA for PCR amplification reactions (Current Protocols in Molecular Biology, John Wiley and Sons, Inc., F. Ausubel et al., eds., 1994). To amplify a DNA sequence containing an

A. baumannii

ORF, genomic DNA (50 nanograms) is introduced into a reaction vial containing 2 mM MgCl

2

, 1 micromolar synthetic oligonucleotide primers (forward and reverse primers) complementary to and flanking a defined

A. baumannii

ORF, 0.2 mM of each deoxynucleotide triphosphate; dATP, dGTP, dCTP, dTTP and 2.5 units of heat stable DNA polymerase (Amplitaq, Roche Molecular Systems, Inc., Branchburg, N.J., USA) in a final volume of 100 microliters.

Upon completion of thermal cycling reactions, each sample of amplified DNA is washed and purified using the Qiaquick Spin PCR purification kit (Qiagen, Gaithersburg, Md., USA). All amplified DNA samples are subjected to digestion with the restriction endonucleases, e.g. NcoI and EcoRI (New England BioLabs, Beverly, Mass., USA) (Current Protocols in Molecular Biology, John Wiley and Sons, Inc., F. Ausubel et al., eds., 1994). DNA samples are then subjected to electrophoresis on 1.0% NuSeive (FMC BioProducts, Rockland, Me. USA) agarose gels. DNA is visualized by exposure to ethidium bromide and long wave uv irradiation. DNA contained in slices isolated from the agarose gel is purified using the Bio 101 GeneClean Kit protocol (Bio 101 Vista, Calif. USA).

Cloning of

A. Baumannii

Nucleic Acids into an Expression Vector

The pET-28b vector is prepared for cloning by digestion with restriction endonucleases, e.g. NcoI and EcoRI (Current Protocols in Molecular Biology, John Wiley and Sons, Inc. F. Ausubel et al., eds., 1994). The pET-28a vector, which encodes a His-Tag that can be fused to the 5′ end of an inserted gene, is prepared by digestion with appropriate restriction endonucleases.

Following digestion, DNA inserts are cloned (Current Protocols in Molecular Biology, John Wiley and Sons, Inc., F. Ausubel et al., eds., 1994) into the previously digested pET-28b expression vector. Products of the ligation reaction are then used to transform the BL21 strain of

E. coli

(Current Protocols in Molecular Biology, John Wiley and Sons, Inc., F. Ausubel et al., eds., 1994) as described below.

Transformation of Competent Bacteria with Recombinant Plasmids

Competent bacteria,

E. coli

strain BL21 or

E. coli

strain BL21(DE3), are transformed with recombinant pET expression plasmids carrying the cloned

A. baumannii

sequences according to standard methods (Current Protocols in Molecular, John Wiley and Sons, Inc., F. Ausubel et al., eds., 1994). Briefly, 1 microliter of ligation reaction is mixed with 50 microliters of electrocompetent cells and subjected to a high voltage pulse, after which, samples are incubated in 0.45 milliliters SOC medium (0.5% yeast extract, 2.0% tryptone, 10 mM NaCl, 2.5 mM KCl, 10 mM MgCl

2, 10

mM MgSO4 and 20, mM glucose) at 37° C. with shaking for 1 hour. Samples are then spread on LB agar plates containing 25 microgram/ml kanamycin sulfate for growth overnight. Transformed colonies of BL21 are then picked and analyzed to evaluate cloned inserts as described below.

Identification of Recombinant Expression Vectors with

A. Baumannii

Nucleic Acids

Individual BL21 clones transformed with recombinant pET-28b

A. baumannii

ORFs are analyzed by PCR amplification of the cloned inserts using the same forward and reverse primers, specific for each

A. baumannii

sequence, that were used in the original PCR amplification cloning reactions. Successful amplification verifies the integration of the

A. baumannii

sequences in the expression vector (Current Protocols in Molecular Biology, John Wiley and Sons, Inc. F. Ausubel et al., eds., 1994).

Isolation and Preparation of Nucleic Acids from Transformants

Individual clones of recombinant pET-28b vectors carrying properly cloned

A. baumannii

ORFs are picked and incubated in 5 mls of LB broth plus 25 microgram/ml kanamycin sulfate overnight. The following day plasmid DNA is isolated and purified using the Qiagen plasmid purification protocol (Qiagen Inc., Chatsworth, Calif., USA).

Expression of Recombinant

A. Baumannii

Sequences in

E. Coli

The pET vector can be propagated in any

E. coli

K-12 strain e.g. HMS174, HB101, JM109, DH5, etc. for the purpose of cloning or plasmid preparation. Hosts for expression include

E. coli

strains containing a chromosomal copy of the gene for T7 RNA polymerase. These hosts are lysogens of bacteriophage DE3, a lambda derivative that carries the lad gene, the lacUV5 promoter and the gene for T7 RNA polymerase. T7 RNA polymerase is induced by addition of isopropyl-B-D-thiogalactoside (IPTG), and the T7 RNA polymerase transcribes any target plasmid, such as pET-28b, carrying its gene of interest. Strains used include: BL21(DE3) (Studier, F. W., Rosenberg, A. H., Dunn, J. J., and Dubendorff, J. W. (1990) Meth. Enzymol. 185, 60-89).

To express recombinant

A. baumannii

sequences, 50 nanograms of plasmid DNA isolated as described above is used to transform competent BL21(DE3) bacteria as described above (provided by Novagen as part of the pET expression system kit). The lacZ gene (beta-galactosidase) is expressed in the pET-System as described for the

A. baumannii

recombinant constructions. Transformed cells are cultured in SOC medium for 1 hour, and the culture is then plated on LB plates containing 25 micrograms/ml kanamycin sulfate. The following day, bacterial colonies are pooled and grown in LB medium containing kanamycin sulfate (25 micrograms/ml) to an optical density at 600 nM of 0.5 to 1.0 O.D. units, at which point, 1 millimolar IPTG was added to the culture for 3 hours to induce gene expression of the

A. baumannii

recombinant DNA constructions.

After induction of gene expression with IPTG, bacteria are pelleted by centrifugation in a Sorvall RC-3B centrifuge at 3500×g for 15 minutes at 4° C. Pellets are resuspended in 50 milliliters of cold 10 mM Tris-HCl, pH 8.0, 0.1 M NaCl and 0.1 mM EDTA (STE buffer). Cells are then centrifuged at 2000×g for 20 min at 4° C. Wet pellets are weighed and frozen at −80° C. until ready for protein purification.

A variety of methodologies known in the art can be utilized to purify the isolated proteins. (Current Protocols in Protein Science, John Wiley and Sons, Inc., J. E. Coligan et al., eds., 1995). For example, the frozen cells may be thawed, resupended in buffer and ruptured by several passages through a small volume microfluidizer (Model M-110S, Microfluidics International Corporation. Newton, Mass.). The resultant homogenize may be centrifuged to yield a clear supernatant (crude extract) and following filtration the crude extract may be fractionated over columns. Fractions may be monitored by absorbance at OD

280

nm. and peak fractions may analyzed by SDS-PAGE.

The concentrations of purified protein preparations may be quantified spectrophotometrically using absorbance coefficients calculated from amino acid content (Perkins, S. J. 1986 Eur. J. Biochem. 157, 169-180). Protein concentrations are also measured by the method of Bradford, M. M. (1976) Anal. Biochem. 72, 248-254, and Lowry, O. H., Rosebrough. N., Farr, A. L. & Randall, R. J. (1951) J. Biol. Chem. 193, pages 265-275, using bovine serum albumin as a standard.

SDS-polyacrylamide gels of various concentrations may be purchased from BioRad (Hercules, Calif., USA), and stained with Coomassie blue. Molecular weight markers may include rabbit skeletal muscle myosin (200 kDa),

E. coli

(-galactosidase (116 kDa), rabbit muscle phosphorylase B (97.4 kDa), bovine serum albumin (66.2 kDa), ovalbumin (45 kDa), bovine carbonic anhydrase (31 kDa), soybean trypsin inhibitor (21.5 kDa), egg white lysozyme (14.4 kDa) and bovine aprotinin (6.5 kDa).

EQUIVALENTS

Those skilled in the art will recognize, or be able to ascertain using no more than routine experimentation, many equivalents to the specific embodiments and methods described herein. The specific embodiments described herein are offered by way of example only, and the invention is to limited only by the terms of the appended claims, along with the full scope of equivalents to which such claims are entitled.

TABLE 2

NT

AA

NT

AA

Query

Orf

ID

ID

Lgth

Lgth

Score

P-value

Subject

Contig011G

10831463_f2_47

1

4127

372

123

NO-HIT

Contig011G

11063133_c1_82

2

4128

702

233

130

2.30E−07

gp:[GI:d1016402:g1736514]

[LN:D90829]

[AC:D90829:AB001340]

[PN:Isochorismatase(EC 3.3.2.1)

(2,3 dihydro-2,3] [GN:yecD]

[OR:

Escherichia coli

]

[SR:

Escherichia coli

(strain:K12)

DNA, clone_lib:Kohara lambda

minise] [DE:

E.coli

genomic DNA,

Kohara clone #337(41.9-42.3

min.).] [NT:ORF_ID:o337#8;

similar to [SwissProt Accession]

Contig011G

12398261_c1_96

3

4129

447

148

679

8.10E−67

sp:[LN:YPR2_ECOLI]

[AC:P10018]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 14.7 KD

PROTEIN (ORF2)] [SP:P10018]

Contig011G

135818_f2_34

4

4130

1032

343

1673

3.80E−172

gp:[GI:g1402861]

[LN:PRU60777] [AC:U60777]

[PN:transposase] [GN:tnpA]

[OR:Plasmid R751] [DE:Plasmid

R751 transposon Tn4321 insertion

sequence IS4321Ltransposase,

Pep1, Pep2, and insertion sequence

IS432R.transposase,complete cds.]

[NT:TnpA of IS4321L; similar to

putative transposases]

Contig011G

14093786_f1_15

5

4131

1299

432

2144

4.70E−222

gp:[GI:g4378784] [LN:AF118810]

[AC:AF118810] [PN:RK2

tetracycline resistance protein]

[OR:Shuttle vector pME6010,

[DE:Shuttle vector pME6010,

complete sequence.] [NT:TetA]

Contig011G

14506651_c3_145

6

4132

210

69

NO-HIT

Contig011G

14736436_f2_39

7

4133

279

92

NO-HIT

Contig011G

14884665_f2_42

8

4134

663

220

127

3.60E−08

pir:[LN:C69895] [AC:C69895]

[PN:conserved hypothetical

protein yoaA] [GN:yoaA]

[CL:hypothetical protein yoaA]

[OR:

Bacillus subtilis

]

Contig011G

16207837_f1_17

9

4135

192

63

NO-HIT

Contig011G

16228168_f2_36

10

4136

375

124

104

9.60E−05

sp:[LN:SP96_DICDI]

[AC:P14328] [GN:COTA]

[OR:DICTYOSTELIUM

DISCOIDEUM] [SR:,SLIME

MOLD] [DE:SPORE COAT

PROTEIN SP96] [SP:P14328]

Contig011G

16616332_c1_94

11

4137

216

71

NO-HIT

Contig011G

16688765_c3_152

12

4138

615

204

1040

4.50E−105

gp:[GI:g45481]

[LN:PDGOAADB] [AC:X04555]

[OR:unidentified bacterium]

[DE:IncC multiresistance plasmid

pDGO100dB gene for AAD

(2′)aminoglycoside

adenylyltransferase.] [NT:AAD(2)

(AA 1-249)] [SP:P10019]

Contig011G

16821001_f3_65

13

4139

183

60

NO-HIT

Contig011G

21666540_c3_125

14

4140

942

313

1128

2.10E−114

gp:[GI:g1119228]

[LN:TRNI5AAA] [AC:M12900]

[GN:P12] [OR:Transposon

Tn1525] [SR:Transposon Tn1525

DNA] [DE:Insertion sequence

IS15-R, complete cds.]

[NT:putative] [RE:

Contig011G

21740787_c1_76

15

4141

273

90

NO-HIT

Contig011G

22549128_c1_87

16

4142

693

230

1139

1.50E−115

gp:[GI:g4378785] [LN:AF118810]

[AC:AF118810] [PN:RK2

tetracycline repressor protein]

[OR:Shuttle vector pME6010]

[DE:Shuttle vector pME6010,

complete sequence.] [NT:TetR]

Contig011G

22947936_f1_12

17

4143

264

87

NO-HIT

Contig011G

24644811_f1_3

18

4144

1020

339

1764

8.60E−182

pir:[LN:S32184] [AC:S32184]

[PN:integrase] [CL:integrase-like

protein] [OR:

Klebsiella

pneumoniae

]

Contig011G

2578161_f2_32

19

4145

207

68

NO-HIT

Contig011G

29386591_c3_137

20

4146

903

300

978

1.70E−98

gp:[GI:g460277]

[LN:ECOMERTET] [AC:L29404]

[OR:

Escherichia coli

]

[SR:

Escherichia coli

(strain DH1)

DNA] [DE:

E. coli

mercuric

reductase (merA) gene; merD

gene; URF1; URF2;invasin

(ORFA) gene; ORFB; and

tetracycline resistance

protein(tetA) gene.] [NT:ORFB;

putative]

Contig011G

30707281_f3_70

21

4147

318

105

NO-HIT

Contig011G

33786251_f3_72

22

4148

216

71

91

0.00037

gp:[GI:g1196674] [LN:NTITNIS]

[AC:M20306] [PN:unknown

protein] [OR:Plasmid NTP16]

[SR:Plasmid NTP16 (tissue

library: AB1157) DNA]

[DE:Plasmid NTP16 DNA with

inserted transposon Tn4352,

flanked bydirect repeats of

insertion element IS176, and

encodesaminoglycoside 3′-

phosphotransferase, complete cds.]

[NT:ORF1; putative]

Contig011G

3416040_c2_122

23

4149

762

254

1125

4.50E−114

sp:[LN:DHP1_ECOLI]

[AC:P11744] [GN:SULI:SUL1]

[OR:

ESCHERICHIA

COLI

:

SHIGELLA

FLEXNERI

:

SALMONELLA

TYPHIMURIUM

:

PSEUDOMON

AS

AERUGINOSA

:

CORYNEBACTE

RIUM GLUTAMICUM

]

[EC:2.5.1.15]

[DE:PYROPHOSPHORYLASE

TYPE I)] [SP:P11744]

Contig011G

34557330_c2_103

24

4150

351

116

526

1.30E−50

pir:[LN:S07258]

[AC:S07258:A44020:S26289]

[PN:helix-destabilizing protein:san

protein:single-stranded DNA-

binding protein Ssb] [CL:single-

stranded DNA-binding protein

homology] [OR:plasmid RK2]

Contig011G

35586561_c3_147

25

4151

543

180

NO-HIT

Contig011G

35629583_c1_95

26

4152

435

144

708

6.90E−70

sp:[LN:YPR1_ECOLI]

[AC:P10017]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 14.4 KD

PROTEIN (ORF 1)] [SP:P10017]

Contig011G

35675303_c3_142

27

4153

552

183

NO-HIT

Contig011G

36189141_c1_77

28

4154

330

109

NO-HIT

Contig011G

4345205_c2_109

29

4155

219

72

NO-HIT

Contig011G

4571917_c2_101

30

4156

327

108

237

5.60E−20

pir:[LN:S10929] [AC:S10929]

[PN:transposase] [CL:Salmonella

typhimurium conserved

hypothetical protein]

[OR:

Mycobacterium fortuitum

]

[SR:strain FC1.,, strain FC1]

[SR:strain FC1,]

Contig011G

4723833_c3_153

31

4157

387

128

586

5.80E−57

sp:[LN:EBR_ECOLI]

[AC:P14502] [GN:EBR:E1]

[OR:

ESCHERICHIA

COLI

:

SALMONELLA

TYPHIMURIUM

:

PSEUDOMON

AS

AERUGINOSA

]

[DE:PUTATIVE ETHIDIUM

BROMIDE RESISTANCE

PROTEIN (E1 PROTEIN)]

[SP:P14502]

Contig011G

5189156_c2_110

32

4158

246

81

NO-HIT

Contig011G

6141566_c1_80

33

4159

531

176

NO-HIT

Contig011G

6377266_c3_143

34

4160

390

129

NO-HIT

Contig011G

7213408_f2_46

35

4161

234

77

NO-HIT

Contig011G

908506_c1_81

36

4162

684

227

157

1.70E−11

sp:[LN:YHHY_ECOLI]

[AC:P46854] [GN:YHHY]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 18.8 KD

PROTEIN IN GNTR-GGT

INTERGENIC REGION (0162)]

[SP:P46854]

Contig011G

9929075_f3_53

37

4163

618

205

909

3.50E−91

gp:[GI:e301204:g2117128]

[LN:ECMERTREL] [AC:Y09025]

[PN:resolvase family recombinase]

[GN:tnpR] [OR:

Enterobacter

cloacae

] [DE:

Enterobacter cloacae

DNA, mosaic mercury resistance

transposableelement (mer-

operon).]

Contig023G

10739430_f1_2

38

4164

339

112

NO-HIT

Contig023G

10817837_c3_307

39

4165

474

157

115

4.80E−07

sp:[LN:YBBJ_ECOLI]

[AC:P75709:P77124] [GN:YBBJ]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 16.8 KD

PROTEIN IN USHA-TESA

INTERGENIC REGION]

[SP:P75709:P77124]

Contig023G

11190687_c1_191

40

4166

189

62

NO-HIT

Contig023G

12009688_f2_102

41

4167

2856

951

3212

0

sp:[LN:ODO1_AZOVI]

[AC:P20707] [GN:SUCA:ODHA]

[OR:

AZOTOBACTER

VINELANDII

] [EC:1.2.4.2]

[DE:KETOGLUTARATE

DEHYDROGENASE)]

[SP:P20707]

Contig023G

1204428_f1_22

42

4168

1254

417

381

3.10E−35

sp:[LN:AMPG_ECOLI]

[AC:P36670] [GN:AMPG]

[OR:

ESCHERICHIA COLI

]

[DE:AMPG PROTEIN]

[SP:P36670]

Contig023G

1210312_c3_292

43

4169

357

118

294

5.10E−26

pir:[LN:E69358] [AC:E69358]

[PN:conserved hypothetical

protein AF0869] [CL:hypothetical

protein MJ1413]

[OR:

Archaeoglobus fulgidus

]

Contig023G

12304715_f2_82

44

4170

462

153

NO-HIT

Contig023G

12318966_f2_98

45

4171

249

82

NO-HIT

Contig023G

129382_f2_88

46

4172

834

277

NO-HIT

Contig023G

13081415_f3_113

47

4173

582

193

NO-HIT

Contig023G

13159675_f1_156

48

4174

933

310

702

3.00E−69

pir:[LN:B65023] [AC:B65023]

[PN:hypothetical protein b2475]

[OR:

Escherichia coli

]

Contig023G

13689676_c2_229

49

4175

1215

404

576

6.70E−56

sp:[LN:MEDH_BACMT]

[AC:P31005] [GN:MDH]

[OR:

BACILLUS

METHANOLICUS

]

[EC:1.1.1.244] [DE:NAD-

DEPENDENT METHANOL

DEHYDROGENASE, (MEDH)]

[SP:P31005]

Contig023G

13797952_f1_6

50

4176

1719

572

966

3.10E−97

sp:[LN:YMFN_ECOLI]

[AC:P75978] [GN:YMFN]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 50.9 KD

PROTEIN IN INTE-PIN

INTERGENIC REGION]

[SP:P75978]

Contig023G

13806500_f3_112

51

4177

489

162

NO-HIT

Contig023G

14142155_f2_101

52

4178

756

251

910

2.70E−91

gp:[GI:e325438:g2239250]

[LN:SPSDH] [AC:Y13760]

[PN:succinate dehydrogenase

putative iron sulphur] [GN:sdhB]

[OR:

Shewanella putrefaciens

]

[DE:

Shewanella putrefaciens

sdhA, sdhB, sdhC, sdhD and sucA

genes.]

Contig023G

14303928_c2_228

53

4179

678

225

589

2.80E−57

gp:[GI:g3493319] [LN:AF084362]

[AC:AF084362] [PN:lipoate-

protein ligase B] [OR:Homo

sapiens] [DE:Homo sapiens

lipoate-protein ligase B mRNA,

partial cds.] [RE:

Contig023G

14490693_f2_54

54

4180

543

180

NO-HIT

Contig023G

14844567_c3_309

55

4181

1362

453

1467

2.60E−150

pir:[LN:QRECAA]

[AC:H64733:JS0447:S10720:S451

91] [PN:aromatic amino acid

transport protein aroP] [GN:aroP]

[CL:arginine permease]

[OR:

Escherichia coli

] [MP:2.6

min]

Contig023G

14875883_c2_241

56

4182

2886

961

3099

0

sp:[LN:SYV_HAEIN]

[AC:P43834] [GN:VALS:H11391]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:6.1.1.9]

[DE:VALYL-TRNA

SYNTHETASE, (VALINE−-

TRNA LIGASE) (VALRS)]

[SP:P43834]

Contig023G

16284549_c1_159

57

4183

439

146

508

1.10E−48

gp:[GI:g3241975] [LN:SSU85710]

[AC:U85710] [PN:transposase]

[OR:

Sulfolobus solfataricus

]

[DE:

Sulfolobus solfataricus

insertion element ISC1041,

transposasegene, complete cds.]

Contig023G

16532658_f2_96

58

4184

222

73

130

1.20E−08

gp:[GI:g1197665]

[LN:APU46856] [AC:U46856]

[PN:vitellogenin] [FN:precursor of

yolk proteins, serum transport]

[OR:

Anolis pulchellus

]

[DE:

Anolis pulchellus

vitellogenin

mRNA, partial cds.]

[NT:ApVtg18] [RE:

Contig023G

16587800_f3_111

59

4185

354

117

NO-HIT

Contig023G

16595062_f3_117

60

4186

276

91

NO-HIT

Contig023G

16610077_c1_171

61

4187

1275

424

2219

5.30E−230

pir:[LN:139506] [AC:139506]

[PN:citrate (si)-synthase,]

[CL:citrate (si)-synthase]

[OR:

Acinetobacter anitralus

]

[EC:4.1.3.7]

Contig023G

16875215_f1_5

62

4188

396

131

NO-HIT

Contig023G

16879625_c2_235

63

4189

2109

702

716

9.80E−71

gp:[GI:g1923241]

[LN:NGU82253] [AC:U82253]

[PN:site-specific recombinase]

[GN:gcr] [FN:mediates

recombination of

Moraxella

lacunata

] [OR:

Neisseria

gonorrhoeae] [DE:

Neisseria

gonorrhoeae

site-specific

recombinase (gcr) gene,complete

cds.] [NT:putative]

Contig023G

17004375_f2_73

64

4190

927

308

578

4.10E−56

sp:[LN:ISPA_ECOLI]

[AC:P22939] [GN:ISPA]

[OR:

ESCHERICHIA COLI

]

[EC:2.5.1.10] [DE:(FPP

SYNTHASE)] [SP:P22939]

Contig023G

2048392_f3_153

65

4191

1467

488

1547

8.50E−159

gp:[GI:g1256717] [LN:PSESTRC]

[AC:M80189:M38421]

[PN:lipoamide dehydrogenase]

[GN:IpdG] [OR:

Pseudomonas

putida

] [SR:

Pseudomonas putida

(strain PpG2) DNA]

[DE:

Pseudomonas putida

lipoamide dehydrogenase (IpdG)

gene, completecds.]

Contig023G

20506385_f2_91

66

4192

612

203

138

4.60E−12

sp:[LN:P25_SCHPO]

[AC:P30821]

[GN:OBR1:SPAC3C7.14C]

[OR:

SCHIZOSACCHAROMYCE

S POMBE

] [SR:,FISSION

YEAST] [DE:P25 PROTEIN

(BREFELDIN A RESISTANCE

PROTEIN)] [SP:P30821]

Contig023G

21593753_c1_187

67

4193

909

302

450

1.50E−42

pir:[LN:E70030] [AC:E70030]

[PN:transcription regulator LysR

family homolog yvbU] [GN:yvbU]

[OR:

Bacillus subtilis

]

Contig023G

22270327_f3_154

68

4194

1167

388

1270

1.90E−129

sp:[LN:SUCC_ECOLI]

[AC:P07460] [GN:SUCC]

[OR:

ESCHERICHIA COLI

]

[EC:6.2.1.5] [DE:SUCCINYL-

COA SYNTHETASE BETA

CHAIN, (SCS-BETA)]

[SP:P07460]

Contig023G

22273891_f3_149

69

4195

207

68

NO-HIT

Contig023G

22460886_f3_116

70

4196

2562

853

125

0.00074

sp:[LN:EGT2_YEAST]

[AC:P42835]

[GN:EGT2:YNL327W:N0320]

[OR:

SACCHAROMYCES

CEREVISIAE

] [SR:,BAKER'S

YEAST] [DE:EGT2 PROTEIN

PRECURSOR (EARLY G1

TRANSCRIPT 2)] [SP:P42835]

Contig023G

22665142_f2_66

71

4197

663

220

NO-HIT

Contig023G

22697277_c2_240

72

4198

1461

486

899

4.00E−90

gp:[GI:d1029634:g3184190]

[LN:AB011381] [AC:AB011381]

[PN:OprM] [GN:oprM]

[OR:

Pseudomonas aeruginosa

]

[SR:

Pseudomonas aeruginosa

(strain:TNP058) DNA]

[DE:

Pseudomonas aeruginosa

gene

for OprM, complete cds.]

Contig023G

23521877_c3_289

73

4199

1275

424

894

1.30E−89

sp:[LN:ACRA_ECOLI]

[AC:P31223]

[GN:ACRA:MTCA:LIR]

[OR:

ESCHERICHIA COLI

]

[DE:ACRIFLAVIN

RESISTANCE PROTEIN A

PRECURSOR] [SP:P31223]

Contig023G

23650062_f2_67

74

4200

477

158

NO-HIT

Contig023G

23712802_c1_162

75

4201

1017

338

1013

3.30E−102

sp:[LN:SYW_CLOLO]

[AC:Q46127] [GN:TRPS:TRSA]

[OR:

CLOSTRIDIUM

LONGISPORUM

] [EC:6.1.1.2]

[DE:(TRPRS)] [SP:Q46127]

Contig023G

2395011_c2_217

76

4202

339

112

NO-HIT

Contig023G

24031717_f2_57

77

4203

504

167

124

5.30E−08

pir:[LN:D70541] [AC:D70541]

[PN:hypothetical protein Rv1578c]

[GN:Rv1578c]

[OR:

Mycobacterium tuberculosis

]

Contig023G

24040937_c1_184

78

4204

438

145

148

1.50E−10

pir:[LN:S77530] [AC:S77530]

[PN:hypothetical protein sll1118]

[CL:hypothetical protein MJ1413]

[OR:Synechocystis sp.] [SR:PCC

6803,, PCC 6803] [SR:PCC 6803,]

Contig023G

24241633_f2_76

79

4205

225

74

NO-HIT

Contig023G

24335888_c2_245

80

4206

660

219

126

1.90E−06

pir:[LN:E70476] [AC:E70476]

[PN:2-

acylglycerophosphoethanolamine

acyltransferase] [GNs]

[OR:

Aquifex aeolicus

]

Contig023G

24337787_f2_78

81

4207

678

225

485

2.90E−46

sp:[LN:YGIX_ECOLI]

[AC:P52076] [GN:YGIX]

[OR:

ESCHERICHIA COLI

]

[DE:PROBABLE

TRANSCRIPTIONAL

REGULATORY PROTEIN

YGIX] [SP:P52076]

Contig023G

24344692_f3_151

82

4208

456

151

240

2.70E−20

sp:[LN:DHSD_ECOLI]

[AC:P10445] [GN:SDHD]

[OR:

ESCHERICHIA COLI

]

[DE:SUCCINATE

DEHYDROGENASE

HYDROPHOBIC MEMBRANE

ANCHOR PROTEIN]

[SP:P10445]

Contig023G

24823302_f1_21

83

4209

384

127

331

6.10E−30

sp:[LN:YBDF_ECOLI]

[AC:P39454:P77200] [GN:YBDF]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 14.1 KD

PROTEIN IN NFNB-ENTD

INTERGENIC REGION]

[SP:P39454:P77200]

Contig023G

24891876_f1_13

84

4210

321

106

NO-HIT

Contig023G

2520128_f1_30

85

4211

204

67

NO-HIT

Contig023G

25398453_c1_179

86

4212

300

99

NO-HIT

Contig023G

25429812_c2_224

87

4213

183

60

NO-HIT

Contig023G

25509650_f1_18

88

4214

312

103

NO-HIT

Contig023G

25596062_f1_35

89

4215

708

235

314

3.90E−28

gp:[GI:g4063381] [LN:AF095845]

[AC:AF095845] [PN:periplasmic

chaperone protein] [GN:lolA]

[OR:

Pseudomonas syringae

]

[DE:

Pseudomonas syringae

cell

division/stress response protein

(ftsK)and periplasmic chaperone

protein (lolA) genes, complete

cds.] [NT:LolA]

Contig023G

25677082_f2_63

90

4216

549

182

NO-HIT

Contig023G

25783128_c3_300

91

4217

1296

431

665

2.50E−65

sp:[LN:YD43_METJA]

[AC:Q58739] [GN:MJ1343]

[OR:

METHANOCOCCUS

JANNASCHII

] [DE:PUTATIVE

AMMONIUM TRANSPORTER

MJ1343] [SP:Q58739]

Contig023G

25797327_f1_15

92

4218

540

179

119

8.20E−07

gp:[GI:e1388750:g4455819]

[LN:BMB18133] [AC:Y18133]

[PN:hypothetical protein]

[OR:Bacteriophage MB78]

[DE:Bacteriophage MB78 ORF1,

ORF2, ORF3, and ORF4.]

[NT:ORF2]

Contig023G

26176575_f3_130

93

4219

726

241

165

2.00E−10

gp:[GI:g3172126]

[LN:ACCPCAOP]

[AC:L05770:U04359:M33798:U2

0284:U11554:L13114:L03407]

[PN:putative regulatory protein

PobS] [GN:pobS]

[OR:Acinetobacter sp. ADPI]

[DE:Acinetobacter sp. ADPI pca-

qui-pob supraoperonic cluster,

completesequence.]

Contig023G

26439702_f2_104

94

4220

195

64

NO-HIT

Contig023G

29328281_f1_17

95

4221

321

106

NO-HIT

Contig023G

29331450_c2_225

96

4222

264

87

NO-HIT

Contig023G

29961463_f3_127

97

4223

1428

475

404

1.10E−42

sp:[LN:YGIY_ECOLI]

[AC:P40719] [GN:YGIY]

[OR:

ESCHERICHIA COLI

]

[EC:27.3.—] [DE:PROBABLE

SENSOR PROTEIN YGIY,]

[SP:P40719]

Contig023G

30282827_c2_230

98

4224

381

126

234

1.20E−19

gp:[GI:e1359193:g4007733]

[LN:SC7A1] [AC:AL034447]

[PN:hypothetical protein

SC7A1.18c] [GN:SC7A1.18c]

[OR:

Streptomyces coelicolor

]

[DE:

Streptomyces coelicolor

cosmid 7A1.] [NT:SC7A1.18c.

conserved hypothetical protein,

len:]

Contig023G

30289001_f1_25

99

4225

1086

361

170

2.40E−09

gp:[GI:g2246532] [LN:U93872]

[AC:U93872] [OR:Kaposi's

sarcoma-associated herpesvirus]

[SR:Kaposi's sarcoma-associated

herpesvirus-Human herpesvirus

8] [DE:Kaposi's sarcoma-

associated herpesvirus

glycoprotein M, DNAreplication

protein, glycoprotein, DNA

replication protein,

FLICEinhibitory protein and v-

cyclin genes, complete cds, and

tegumentprotein gene, partial cds.]

[NT:ORF 73, contains large

complex repeat CR 73]

Contig023G

3132635_c3_287

100

4226

1062

353

1394

1.40E−142

gp:[GI:d1023737:g2547044]

[LN:AB001997] [AC:AB001997]

[PN:solanesyl diphosphate

synthase] [GN:sds1]

[OR:

Rhodobacter capsulatus

]

[SR:

Rhodobacter capsulatus

(strain:SB1003) DNA]

[DE:

Rhodobacter capsulatus

DNA

for solanesyl diphosphate

synthase,complete cds.]

Contig023G

3142807_f3_118

101

4227

1242

413

551

3.00E−53

sp:[LN:YRAM_BACSU]

[AC:007931] [GN:YRAM]

[OR:

BACILLUS SUBTILIS

]

[DE:HYPOTHETICAL 39.5 KD

PROTEIN IN SIGZ-CSN

INTERGENIC REGION]

[SP:007931]

Contig023G

32088500_c1_196

102

4228

189

62

NO-HIT

Contig023G

32221090_f2_60

103

4229

840

279

300

1.20E−26

gp:[GI:g4530143] [LN:AF005222]

[AC:AF085222] [PN:putative

scaffolding protein]

[OR:

Streptococcus thermophilus

bacteriophage DT1]

[DE:

Streptococcus thermophilus

bacteriophage DT1 complete

genome.] [NT:Orf7]

Contig023G

32464812_f1_29

104

4230

693

230

NO-HIT

Contig023G

3301936_f1_43

105

4231

462

153

275

5.30E−24

sp:[LN:DHSC_ECOLI]

[AC:P10446] [GN:SDHC:CYBA]

[OR:

ESCHERICHIA COLI

]

[DE:SUCCINATE

DEHYDROGENASE

CYTOCHROME B-556

SUBUNIT] [SP:P10446]

Contig023G

33630010_c2_243

106

4232

711

236

NO-HIT

Contig023G

33681561_f1_3

107

4233

354

117

192

3.30E−15

gp:[GI:d1037663:g4126656]

[LN:AB016282] [AC:AB016282]

[OR:bacteriophage phi-105]

[SR:bacteriophage phi-105 DNA]

[DE:Bacteriophage phi-105 DNA,

complete sequence.] [NT:ORF19]

Contig023G

3400292_f2_62

108

4234

225

74

NO-HIT

Contig023G

34119063_f1_49

109

4235

927

308

872

2.90E−87

sp:[LN:YEDI_ECOLI]

[AC:P46125:P76332] [GN:YEDI]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 32.2 KD

PROTEIN IN DSRB-VSR

INTERGENIC REGION]

[SP:P46125:P76332]

Contig023G

34258406_f3_157

110

4236

1296

431

527

1.00E−50

gp:[GI:d1032656:g3327262]

[LN:AB010827] [AC:AB010827]

[PN:NhaP] [GN:nhaP]

[OR:

Pseudomonas aeruginosa

]

[SR:

Pseudomonas aeruginosa

(strain:PAOI) DNA]

[DE:

Pseudomonas aeruginosa

gene

for NhaP, complete cds.]

Contig023G

34413411_f2_99

111

4237

531

176

127

2.30E−07

sp:[LN:Y4JE_RHISN]

[AC:P55505] [GN:Y4JE]

[OR:RHIZOBIUM SP]

[DE:HYPOTHETICAL 29.4 KD

PROTEIN Y4JE] [SP:P55505]

Contig023G

34417183_c1_174

112

4238

1893

630

2044

1.80E−211

sp:[LN:RPSD_PSEAE]

[AC:P26480]

[GN:RPOD:RPODA]

[OR:

PSEUDOMONAS

AERUGINOSA

] [DE:RNA

POLYMERASE SIGMA

FACTOR RPOD (SIGMA-70)]

[SP:P26480]

Contig023G

34644057_f1_45

113

4239

1218

405

1334

3.20E−136

gp:[GI:g39283] [LN:AVSUCCTR]

[AC:X52432]

[PN:succinyltransferase]

[OR:

Azotobacter vinelandii

]

[DE:

A.vinelandii

gene for

succinyltransferase.] [SP:P20708]

Contig023G

34650462_f3_106

114

4240

222

73

NO-HIT

Contig023G

35282327_f1_14

115

4241

2280

759

170

5.90E−09

sp:[LN:Y4SI_RHISN]

[AC:P55652] [GN:Y4SI]

[OR:RHIZOBIUM SP]

[DE:PROBABLE

CHEMORECEPTOR Y4SI

(METHYL-ACCEPTING

CHEMOTAXIS PROTEIN)]

[SP:P55652]

Contig023G

35314030_f3_108

116

4242

1362

453

569

3.70E−55

sp:[LN:VP3_BPHK7]

[AC:P49859] [GN:3]

[OR:BACTERIOPHAGE HK97]

[DE:PORTAL PROTEIN (GP3)]

[SP:P49859]

Contig023G

35319187_f1_41

117

4243

516

171

NO-HIT

Contig023G

35417007_f2_61

118

4244

402

133

NO-HIT

Contig023G

36114678_f3_129

119

4245

960

319

386

9.10E−36

pir:[LN:E71694] [AC:E71694]

[PN:hypothetical protein RP372]

[GN:RP372] [OR:

Rickettsia

prowazekii

]

Contig023G

36130302_c3_288

120

4246

645

214

194

2.00E−15

pir:[LN:S32217] [AC:S32217]

[PN:hypothetical protein 2]

[OR:

Bacillus megaterium

]

Contig023G

36539683_f3_110

121

4247

405

134

98

0.00015

gp:[GI:g2688942] [LN:AF025480]

[AC:AF025480] [PN:Na—Ca+K

exchanger] [GN:BISNCKX]

[OR:Bison bison] [SR:American

bison] [DE:Bison bison Na—Ca+K

exchanger (BISNCKX) mRNA,

partial cds.] [NT:ion exchanger;

cytosolic region; expressed in]

[RE:

Contig023G

36600417_f2_103

122

4248

912

303

1108

2.80E−112

gp:[GI:g4512118] [LN:AF128399]

[AC:AF128399] [PN:succinyl-

CoA synthetase alpha subunit]

[GN:sucD] [OR:

Pseudomonas

aeruginosa

] [DE:

Pseudomonas

aeruginosa

succinyl-CoA

synthetase beta subunit (sucC)and

succinyl-CoA synthetase alpha

subunit (sucD) genes,

completecds.]

Contig023G

3914053_f1_7

123

4249

1230

409

657

1.70E−64

sp:[LN:COAT_BPHK7]

[AC:P49861] [GN:5]

[OR:BACTERIOPHAGE HK97]

[DE:MAJOR CAPSID PROTEIN

PRECURSOR (GPS) (HEAD

PROTEIN)] [SP:P49861]

Contig023G

3947805_c3_282

124

4250

1410

469

1155

3.00E−117

sp:[LN:YEEF_ECOLI]

[AC:P33016] [GN:YEEF]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 49.8 KD

TRANSPORT PROTEIN IN

SBCB-HISL INTERGENIC

REGION] [SP:P33016]

Contig023G

3959552_f2_53

125

4251

234

77

NO-HIT

Contig023G

3964192_c1_192

126

4252

870

289

548

6.20E−53

sp:[LN:YBBK_ECOLI]

[AC:P77367] [GN:YBBK]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 33.7 KD

PROTEIN IN USHA_TESA

INTERGENIC REGION]

[SP:P77367]

Contig023G

4142757_f1_46

127

4253

777

258

NO-HIT

Contig023G

422502_c1_172

128

4254

963

320

659

1.10E−64

pir:[LN:S76272] [AC:S76272]

[PN:yceA protein homolog]

[CL:

Escherichia coli

yceA protein]

[OR:Synechocystis sp.] [SR:PCC

6803,, PCC6803] SR:PCC 6803,]

Contig023G

426090_c3_306

129

4255

960

319

402

1.80E−37

pir:[LN:H69874] [AC:H69874]

[PN:conserved hypothetical

protein ylbK] [GN:ylbK]

[OR:

Bacillus subtilis]

Contig023G

4329813_f3_152

130

4256

1845

614

2329

1.20E−241

gp:[GI:d1032167:g3273345]

[LN:AB015757] [AC:AB015757]

[PN:fumarate reductase

flavoprotein subunit]

[OR:

Rhodoferax fermentans

]

[SR:

Rhodoferax fermentans

(strain:FR2) DNA]

[DE:

Rhodoferax fermentans

genes

for fumarate reductase

subunits,complete cds.]

Contig023G

4345293_f1_9

131

4257

483

160

NO-HIT

Contig023G

4745400_f1_1

132

4258

399

132

355

1.80E−32

sp:[LN:VG64_BPMD2]

[AC:O64256] [GN:64]

[OR:MYCOBACTERIOPHAGE]

D29] [DE:GENE 64 PROTEIN

(GP64)] [SP:O64256]

Contig023G

4875438_f2_81

133

4259

816

271

326

2.10E−29

gp:[GI:g1125836]

[GN:CELT25G12] [AC:U43283]

[GN:T25G12.7]

[OR:

Caenorhabditis elegans

]

[DE:

Caenorhabditis elegans

cosmid T25G12.] [NT:Similar to

dehydrogenase; T25G12.7]

Contig023G

4949042_f1_16

134

4260

2871

956

137

5.30E−06

gp:[GI:e1388752:g4455821]

[LN:BMB18133] [AC:Y18133]

[PN:hypothetical protein]

[OR:Bacteriophage MB78]

[DE:Bacteriophage MB78 ORF1,

ORF2, ORF3, and ORF4.]

[NT:ORF4] [RE:

Contig023G

5078838_f3_125

135

4261

1305

434

110

1.40E−05

pir:[LN:A26892] [AC:A26892]

[PN: Mopa box protein] [OR:

Mus

musculus

] [SR:,house mouse]

Contig023G

5109700_f3_142

136

4262

1278

425

1464

5.30E−150

sp:[LN:SYS_ECOLI]

[AC:P09156] [GN:SERS]

[OR:

ESCHERICHIA COLI

]

[EC:6.1.1.11] [DE:SERYL-TRNA

SYNTHETASE, (SERINE--TRNA

LIGASE) (SERRS)] [SP:P09156]

Contig023G

5190805_f3_126

137

4263

1659

552

1124

5.70E−114

sp:[LN:YJDB_ECOLI]

[AC:P30845:P76793] [GN:YJDB]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 61.7 KD

PROTEIN IN BASS-ADIY

INTERGENIC REGION]

[SP:P30845:P76793]

Contig023G

5203957_c2_227

138

4264

330

109

112

9.90E−07

sp:[LN:YBED_ECOLI]

[AC:P30977] [GN:YBED]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 9.8 KD

PROTEIN IN LIPB-DACA

INTERGENIC REGION (ORF1)]

[SP:P30977]

Contig023G

5367750_f3_115

139

4265

414

137

NO-HIT

Contig023G

5917577_f1_19

140

4266

369

122

NO-HIT

Contig023G

5978587_f2_69

141

4267

561

186

132

7.50E−09

gp:[GI:e51245:g1143594]

[LN:STPES18G] [AC:X67137]

[PN:gp19 protein] [GN:gene 19]

[OR:

Salmonella typhimurium]

[DE:

S.typhimurium

-phage ES18

genes 13, 19 and 15.]

Contig023G

6019127_f3_114

142

4268

396

131

NO-HIT

Contig023G

6031578_f2_90

143

4269

474

157

422

1.40E−39

sp:[LN:YIBK_HAEIN]

[AC:P44868] [GN:HI0766]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:2.1.1.—]

[DE:HYPOTHETICAL

TRNA/RRNA

METHYLTRANSFERASE

HI0766,] [SP:P44868]

Contig023G

603515_f1_52

144

4270

279

92

NO-HIT

Contig023G

6417325_f1_33

145

4271

324

107

377

8.20E−35

sp:[LN:RL21_HAEIN]

[AC:P44359]

[GN:RPLU:RPL21:HI0880]

[OR:

HAEMOPHILUS

INFLUENZAE

] [DE:50S

RIBOSOMAL PROTEIN L21]

[SP:P44359]

Cnntig023G

6688292_c2_213

146

4272

186

61

NO-HIT

Contig023G

6930180_f1_34

147

4273

276

91

330

7.80E−30

pir:[LN:F64099] [AC:F64099]

[PN:ribosomal protein L27]

[CL:

Escherichia coli

ribosomal

protein L27:eubacterial ribosomal

protein L27 homology]

[OR:

Haemophilus influenzae

]

Contig023G

7218842_f1_38

148

4274

1383

460

1082

1.60E−109

sp:[LN:CYSG_ECOLI]

[AC:P11098:P76685] [GN:CYSG]

[OR:

ESCHERICHIA COLI

]

[EC:2.1.1.107:1.—.—.—:4.99.1.—]

[DE:(EC 4.99.1.—)]]

[SP:P11098:P76685]

Contig023G

789058_f2_71

149

4275

234

77

NO-HIT

Contig023G

960452_c3_290

150

4276

3177

1058

3139

0

sp:[LN:MEXB_PSEAE]

[AC:P52002] [GN:MEXB]

[OR:

PSEUDOMONAS

AERUGINOSA

]

[DE:MULTIDRUG RESISTANCE

PROTEIN MEXB (MULTIDRUG-

EFFLUX TRANSPORTER

MEXB)] [SP:P52002]

Contig023G

9806686_c1_175

151

4277

537

178

NO-HIT

Contig023G

984752_c3_311

152

4278

186

61

NO-HIT

Contig023G

9860215_f3_107

153

4279

264

87

NO-HIT

Contig066G

10430167_f1_11

154

4280

942

313

299

1.50E−26

sp:[LN:YEAM_ECOLI]

[AC:P76241] [GN:YEAM]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL

TRANSCRIPTIONAL

REGULATOR IN GAPA-RND

INTERGENIC REGION]

[SP:P76241]

Contig066G

10662776_f2_35

155

4281

1209

402

985

3.10E−99

pir:[LN:C70505] [AC:C70505]

[PN:probable acyl-coa

dehydrogenase] [GN:fadE20]

[CL:acyl-CoA dehydrogenase]

[OR:

Mycobacterium tuberculosis

]

Contig066G

1189152_f2_24

156

4282

1473

490

1408

4.60E−144

sp:[LN:YLEA_HAEIN]

[AC:Q57163] [GN:H10019]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

HI0019] [SP:Q57163]

Contig066G

1207157_f3_49

157

4283

2373

790

441

7.80E−40

gp:[GI:e1352251:g3892703]

[LN:ATF7K2] [AC:AL033545]

[PN:putative glycine-rich protein]

[GN:F7K2_60] [OR:

Arabidopsis

thaliana

] [SR:thate cress]

[DE:

Arabidopsis thaliana

DNA

chromosome 4, BAC clone F7K2

(ESSAIIproject).] [NT:long ORF

and comparable genepredictions

are also]

Contig066G

12907532_f3_50

158

4284

2448

815

1522

1.40E−159

sp:[LN:VACB_HAEIN]

[AC:P44907] [GN:VACB:H10861]

[OR:

HAEMOPHILUS

INFLUENZAE

] [DE:VACB

PROTEIN HOMOLOG]

[SP:P44907]

Contig066G

14881562_c2_105

159

4285

840

279

353

2.90E−32

sp:[LN:PSS_HELPY]

[AC:Q48269:007681]

[GN:PSSA:PTR:HP1071]

[OR:

HELICOBACTER PYLORI

]

[SR:,

CAMPYLOBACTER

PYLORI

] [EC:2.7.8.8]

[DE:(PHOSPHATIDYLSERINE

SYNTHASE)]

[SP:Q48269:007681]

Contig066G

1511550_c1_62

160

4286

396

131

476

2.60E−45

sp:[LN:RL17_PSEAE]

[AC:052761] [GN:RPLQ]

[OR:

PSEUDOMONAS

AERUGINOSA

] [DE:50S

RIBOSOMAL PROTEIN L17]

[SP:052761]

Contig066G

15870462_c2_91

161

4287

579

192

NO-HIT

Contig066G

16206258_c2_96

162

4288

456

151

122

1.90E−07

gp:[GI:g1155358]

[LN:BPU43599] [AC:U43599]

[PN:microfilarial sheath protein

SHP3 precursor] [GN:shp3]

[FN:structural protein] [OR:

Brugia

pahangi

] [DE:

Brugia pahangi

microfilarial sheath protein SHP3

(shp3) gene,complete cds.]

Contig066G

181292_f2_27

163

4289

648

215

672

4.50E−66

sp:[LN:XPT_BACSU]

[AC:P42085] [GN:XPT]

[OR:

BACILLUS SUBTILIS

]

[EC:2.4.2.—] [DE:XANTHINE

PHOSPHORIBOSYLTRANSFER

ASE,] [SP:P42085]

Contig066G

19585052_c3_124

164

4290

948

315

118

0.0002

sp:[LN:INVO_PIG] [AC:P18175]

[GN:IVL] [OR:SUS SCROFA]

[DE:INVOLUCRIN] [SP:P18175]

Contig066G

1985642_c3_109

165

4291

1524

507

1357

1.20E−138

pir:[LN:G70852] [AC:G70852]

[PN:hypothetical protein Rv3083]

[GN:Rv3083] [OR:

Mycobacterium

tuberculosis

]

Contig066G

20506530_c2_104

166

4292

321

106

NO-HIT

Contig066G

22688768_f2_21

167

4293

612

203

137

6.80E−07

gp:[GI:e1345871:g3876300]

[LN CEF22E12] [AC:Z71180]

[GN:egl-9] [OR:

Caenorhabditis

elegans

] [DE:

Caenorhabditis

elegans

cosmid F22E12, complete

sequence.] [NT:Weak similarity

with apoptosis protein RP-8;

cDNA]

Contig066G

23446055_c3_125

168

4294

2004

667

396

3.60E−34

pir:[LN:QQECW1]

[AC:S56616:G65254:A41332:A93

698:A93867:A04435] [PN:soluble

lytic transglycosylase, precursor]

[GN:slt] [CL:soluble lytic

transglycosylase] [OR:

Escherichia

coli

] [EC:3.2.1.—] [MP:100 min]

Contig066G

23572212_c2_88

169

4295

390

129

540

4.40E−52

gp:[GI:g4098575]

[LN:XCU79735] [AC:U79735]

[PN:ribosomal protein S11]

[GN:rpsK] [OR:

Xanthomonas

campestris

pv.

campestris

]

[DE:

Xanthomonas campestris

pv.

campestris

ALPHA operon,

ribosomalprotein S13 (rpsM),

ribosomal protein S11 (rpsK),

ribosomal protein S4 (rpsD), RNA

polymerase ALPHA subunit

(rpoA) and ribosomalprotein L17

(rplQ) genes, complete cds.]

Contig066G

24616057_c3_116

170

4296

537

178

215

1.20E−17

sp:[LN:MSP8_EIMAC]

[AC:P09125] [OR:

EIMERTA

ACERVULINA

]

[DE:MEROZOITE SURFACE

PROTEIN CMZ-8 (FRAGMENT)]

[SP:P09125]

Contig066G

24631392_f3_46

171

4297

1110

369

945

5.30E−95

sp:[LN:PHOL_ECOLI]

[AC:P77349] [GN:YBEZ]

[OR:

ESCHERICHIA COLI]

[DE:PHOH-LIKE PROTEIN]

[SP:P77349]

Contig066G

25409677_c1_61

172

4298

1029

342

1218

6.20E−124

gp:[GI:g2896137] [LN:AF047025]

[AC AF047025] [PN:DNA-

directed RNA polymerase alpha

chain] [GN:rpoA]

[OR:

Pseudomonas aeruginosa

]

[DE:

Pseudomonas aeruginosa

ribosomal protein S4 (rpsD) gene,

partialcds; DNA-directed RNA

polymerase alpha chain (rpoA),

ribosomallarge subunit protein L17

(rplQ), and catalase isozyme A

(kalA)genes., complete cds; and

bacterioferritin (bfr) genQ partial

cds.] [NT:Similar to

Heamophilus

influenza

RpoA, Swissprot]

Contig066G

25475890_c3_110

173

4299

1131

376

NO-HIT

Contig066G

26181541_f2_29

174

4300

1251

416

422

1.40E−39

sp:[LN:RBN_ECOLI]

[AC:P32146] [GN:RBN]

[OR:

ESCHERICHIA COLI

]

[EC:3.1.—.—]

[DE:RIBONUCLEASE BN,

(RNASE BN)] [SP:P32146]

Contig066G

26375702_c1_67

175

4301

258

85

118

2.30E−07

sp:[LN:YGFY_ECOLI]

[AC:Q46825] [GN:YGFY]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 10.5 KD

PROTEIN IN FLDB-BGLA

INTERGENIC REGION]

[SP:Q46825]

Contig066G

29460757_f2_25

176

4302

186

61

NO-HIT

Contig066G

30506562_f1_14

177

4303

2061

686

1732

2.10E−178

sp:[LN:OPDA_ECOLI]

[AC:P27298] [GN:PRLC:OPDA]

[OR:

ESCHERICHIA COLI

]

[EC:3.4.24.70]

[DE:OLIGOPEPTIDASE A.]

[SP:P27298]

Contig066G

32058137_c2_100

178

4304

660

219

337

1.40E−30

gp:[GI:g3493605] [LN:AF067083]

[AC:AF067083] [PN:Trp repressor

binding protein] [OR:Vitreoscilla

sp.] [SR:Vitreoscilla sp]

[DE:Vitreoscilla sp. outer

membrane protein homolog gene,

complete cds;Trp repressor binding

protein gene. partial cds; and

unknown genes.] [RE:

Contig066G

32632952_c1_79

179

4305

915

304

245

8.00E−21

pir:[LN:G69897] [AC:G69897]

[PN:conserved hypothetical

protein yoaV] [GN:yoaV]

[OR:

Bacillus subtilis

]

Contig066G

32695300_f3_42

180

4306

546

181

NO-HIT

Contig066G

33367202_c3_126

181

4307

663

220

NO-HIT

Contig066G

34021887_c1_86

182

4308

351

116

NO-HIT

Contig066G

34443_f3_47

183

4309

486

161

320

9.00E−29

sp:[LN:YBEY_ECOLI]

[AC:P77385] [GN:YBEY]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 17:5 KD

PROTEIN IN CUTE-ASNB

INTERGENIC REGION]

[SP:P77385]

Contig066G

35400067_f1_10

184

4310

717

238

NO-HIT

Contig066G

35558452_c2_106

185

4311

1080

359

NO-HIT

Contig066G

448426_f1_15

186

4312

447

148

104

0.00085

gp:[GI:g467292] [LN:DDU07817]

[AC:U07817] [PN:glutamine-

asparagine rich protein]

[OR:

Dictyostelium discoideum

]

[DE:

Dictyostelium discoideum

AX3 glutamine-asparagine rich

proteingene, partial cds.]

Contig066G

4772807_c3_119

187

4313

291

96

142

2.00E−09

gp:[GI:g2271518] [LN:AF009829]

[AC:AF009829] [PN:unknown]

[GN:MBE4863a]

[OR:

Mycobacterium bovis

]

[DE:

Mycobacterium bovis

MBE4863a gene, partial cds, and

MBE4863b gene,complete cds.]

Contig066G

4860312_c3_115

188

4314

510

169

131

1.10E−08

gp:[GI:e1326345:g3688206]

[LN:CAJ10321] [AC:AJ010321]

[PN:cicA protein] [GN:cicA]

[OR:

Caulobacter crescentus

]

[DE:

Caulobacter crescentus

partial

tig gene and clpP, cicA, clpX,

longenes.]

Contig066G

4879713_c3_111

189

4315

2217

738

137

2.30E−13

gp:[GI:e1375212:g4226003]

[LN:WSU132740]

[AC:AJ132740] [PN:large integral

C4-dicarboxylate membrane]

[GN:dctM] [OR:

Wolinella

succinogenes

] [DE:

Wolinella

succinogenes

dctP, dctQ and dctM

genes, and partial orfN.]

Contig066G

4954377_f3_48

190

4316

735

244

244

1.00E−20

sp:[LN:YC08_YEAST]

[AC:P37261]

[GN:YCLX08C:YCLX8C]

[OR:

SACCHAROMYCES

CEREVISIAE

] [SR:,BAKER'S

YEAST] [DE:HYPOTHETICAL

21.1 KD PROTEIN IN FUSI-

AGPI INTERGENIC REGION]

[SP:P37261]

Contig066G

4969003_c1_76

191

4317

681

226

437

3.60E−41

pir:[LN:A64864] [AC:A64864]

[PN:probable 2-hydroxyhepta-2,4-

diene-1,7-dioate isomerase b1180]

[CL:2-hydroxyhepta-2,4-diene-1,7

dioate isomerase] [OR:

Escherichia

coli

]

Contig066G

5078375_c1_68

192

4318

396

131

NO-HIT

Contig066G

5125285_c1_75

193

4319

507

168

NO-HIT

Contig066G

5163432_c3_118

194

4320

429

142

237

9.10E−20

pir:[LN:S71558] [AC:S71558]

[PN:probable cell walt-plasma

membrane linker protein PRP

precursor:hybrid-proline-rich

protein] [CL:hydroxyproline-rich

glycoprotein] [OR:

Brassica napus

]

[SR:, rape]

Contig066G

552012_c1_85

195

4321

1032

343

1320

9.70E−135

gp:[GI:g4235484] [LN:AF109682]

[AC:AF109682] [PN:malate

dehydrogenase] [GN:MDH]

[OR:

Aquaspirillum arcticum

]

[DE:

Aquaspirillum arcticum

malate dehydrogenase (MDH)

gene, completecds.]

Contig066G

6111002_f2_33

196

4322

237

78

108

2.60E−06

sp:[LN:YHEV_ECOLI]

[AC:P56622] [GN:YHEV]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 7.6 KD

PROTEIN IN SLYD-KEFB

INTERGENIC REGION]

[SP:P56622]

Contig066G

6828443_c3_127

197

4323

873

290

560

3.30E−54

sp:[LN:YHIR_ECOLI]

[AC:P37634] [GN:YHIR]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 31.9 KD

PROTEIN IN PRLC-GOR

INTERGENIC REGION (0280A)]

[SP:P37634]

Contig066G

6835385_f2_26

198

4324

774

257

NO-HIT

Contig066G

898568_c2_89

199

4325

639

212

734

1.20E−72

pir:[LN:R3EC4]

[AC:C23807:A02703:A30417:559

052:157736:177540:177542;1

[PN:ribosomal protein S4]

[GN:rpsD] [CL:

Escherichia coli

ribosomal protein S4]

[OR:

Escherichia coli

] [MP:73

min]

Contig067G

102205_f2_198

200

4326

792

263

942

1.10E−94

pir:[LN:A57432]

[AC:A57432:A53967]

[PN:ferredoxin--NADP+

reductase,] [GN:fpr]

[OR:

Azotobacter vinelandii

]

[EC:1.18.1.2]

Contig067G

10313955_c1_561

201

4327

222

73

NO-HIT

Contig067G

10557702_f1_41

202

4328

618

205

310

1.00E−27

pir:[LN:S76551] [AC:S76551]

[PN:hypothetical protein]

[OR:Synechocystis sp.] [SR:PCC

6803, PCC 68031 [SR:PCC 6803;]

Contig067G

10631930_f2_220

203

4329

201

66

NO-HIT

Contig067G

10656285_f2_312

204

4330

255

84

NO-HIT

Contig067G

1070880_f3_330

205

4331

231

76

283

7.50E−25

pir:[LN:R3EC21]

[AC:A02749:A30426:I57721:G65

094] [PN:ribosomal protein S21]

[GN:rpsU] [CL:

Escherichia coli

ribosomal protein S21]

[OR:

Escherichia coli

] [MP:67

min]

Contig067G

10719000_f1_107

206

4332

558

185

448

2.50E−42

gp:[GI:e1154545:g2570059]

[LN:NGMS11DNA]

[AC:AJ004687] [PN:N-4 cytosine-

specificmMethyltransferase]

[OR:

Neisseria gonorrhoeae

]

[DE:

Neisseria gonorrheae

MS11

encoding N-4 cytosine-

specificmethyltransferase.]

Contig067G

10759817_c1_629

207

4333

1167

389

551

1.50E−52

sp:[LN:YK69_YEAST]

[AC:P36165]

[GN:YKR089C:YKR409]

[OR:

SACCHAROMYCES

CEREVISIAE

] [SR:,BAKER'S

YEAST] [DE:HYPOTHETICAL

102.7 KD PROTEIN IN PRP16-

SRP40 INTERGENIC REGION]

[SP:P36165]

Contig067G

10818752_c3_852

208

4334

318

105

NO-HIT

Contig067G

10973917_f1_40

209

4335

1149

382

1028

8.50E−104

sp:[LN:RODA_ECOLI]

[AC:P15035:P13409]

[GN:MRDB:RODA]

[OR:

ESCHERICHIA COLI

]

[DE:ROD SHAPE-

DETERMINING PROTEIN

RODA] [SP:P15035:P13409]

Contig067G

11020162_c1_541

210

4336

225

74

NO-HIT

Contig067G

11125630_f1_88

211

4337

225

74

NO-HIT

Contig067G

11135962_f1_152

212

4338

807

268

476

2.60E−45

sp:[LN:YMFC_ECOLI]

[AC:P75966] [GN:YMFC]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 24.9 KD

PROTEIN IN TRMU-ICDA

INTERGENIC REGION]

[SP:P75966]

Contig067G

11720307_c3_826

213

4339

1026

341

1113

8 30E−113

sp:[LN:FATD_VIBAN]

[AC:P37738] [GN:FATD]

[OR:

VIBRIO ANGUILLARUM

]

[DE:FERRIC ANGUIBACTIN

TRANSPORT SYSTEM

PERMEASE PROTEIN FATD]

[SP:P37738]

Contig067G

11739418_c3_898

214

4340

1122

373

1048

6.40E−106

sp:[LN:PHEA_PSEST]

[AC:P27603] [GN:PHEA]

[OR:

PSEUDOMONAS

STUTZERI

]

[SR:,

PSEUDOMONAS

PERFECTOMARINA

]

[EC:5.4.99.5:4.2.1.51] [DE:(EC

4.2.1.51) (PDT) (P-PROTEIN)]

[SP:P27603]

Contig067G

11848562_f2_258

215

4341

189

62

NO-HIT

Contig067G

1196937_c3_883

216

4342

192

63

NO-HIT

Contig067G

1203137_c3_792

217

4343

969

322

752

1.50E−74

gp:[GI:g290470] [LN:ECOSOHB]

[AC:M73320] [GN:sohB]

[OR:

Escherichia coli

]

[SR:

Escherichia coli

(sub_strain

W3110, strain K-12) DNA]

[DE:

E.coli

sohB gene, complete

CDS.]

Contig067G

1210317_c2_654

218

4344

711

236

92

1.40E−05

sp:[LN:VENB_VIBVU]

[AC:P74965] [GN:VENB]

[OR:

VIBRIO VULNIFICUS

]

[EC:3.3.2.1]

[DE:DIHYDROXYBENZOATE

SYNTHASE)] [SP:P74965]

Contig067G

12226556_f2_276

219

4345

543

180

241

2.10E−20

pir:[LN:C64858] [AC:C64858]

[PN:probable dNTP

pyrophosphohydrolase b1134]

[CL:mutT domain homology]

[OR:

Escherichia coli

]

Contig067G

12298200_f1_57

220

4346

660

219

750

2.40E−74

sp:[LN:SODF_SYNP7]

[AC:P18655] [GN:SODB]

[OR:SYNECHOCOCCUS SP]

[SR:PCC 7942,ANACYSTIS

NIDULANS R2] [EC:1.15.1.1]

[DE:SUPEROXIDE DISMUTASE

[FE],] [SP:P18655]

Contig067G

1230458_f1_124

221

4347

798

265

148

3.10E−13

sp:[LN:YCFC_HAEIN]

[AC:P44796] [GN:H10638]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

H10638] [SP:P44796]

Contig067G

12787750_c1_604

222

4348

1272

423

2035

1.70E−210

gp:[GI:g3284000] [LN:AF073769]

[AC:AF073769] [PN:serine

hydroxymethyltransferase]

[GN:gtyA] [OR:

Acinetobacter

radioresistens

] [DE:

Acinetobacter

radioresistens

serine

hydroxymethyltransferase

(glyA)gene, complete cds.]

Contig067G

135087_f3_455

223

4349

1218

405

797

2.60E−79

sp:[LN:DACA_HAEIN]

[AC:P44466] [GN:DACA:H10029]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:3.4.16.4]

[DE:(DD-

CARBOXYPEPTIDASE) (PBP-

5)] [SP:P44466]

Contig067G

1352155_f1_138

224

4350

726

241

381

3.10E−35

sp:[LN:YIJC_ECOLI]

[AC:P27307] [GN:YIJC]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 26.6 KD

PROTEIN IN UDHA-TRMA

INTERGENIC REGION (ORFA)]

[SP:P27307]

Contig067G

1359428_c3_764

225

4351

633

210

237

5.60E−20

gp:[GI:g2565360] [LN:AF025663]

[AC:AF025663] [PN:lipoprotein]

[GN:vlpA] [OR:

Vibrio cholerae

]

[DE:

Vibrio cholerae

lipoprotein

(vlpA) gene, complete cds.]

[NT:VlpA]

Contig067G

1360317_f3_438

226

4352

246

81

NO-HIT

Contig067G

13672552_c1_596

227

4353

885

294

925

7.00E−93

sp:[LN:RS2_SPIPL] [AC:P34831]

[GN:RPSB] [OR:

SPIRULINA

PLATENSIS

] [DE:30S

RIBOSOMAL PROTEIN S2]

[SP:P34831]

Contig067G

13756562_c1_621

228

4354

831

276

889

4.50E−89

sp:[LN:YAAA_ECOLI]

[AC:P11288] [GN:YAAA]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 29.6 KD

PROTEIN IN THRC-TALB

INTERGENIC REGION]

[SP:P11288]

Contig067G

13786577_f1_337

229

4355

246

81

98

3.00E−05

sp:[LN:YHHP_HAEIN]

[AC:P44841] [GN:H10721]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

H10721] [SP:P44841]

Contig067G

13869027_c1_533

230

4356

906

301

821

7.30E−82

pir:[LN:F69419] [AC:F69419]

[PN:phosphate ABC transporter,

ATP-binding protein (pstB)

homolog] [CL:inner membrane

protein malK: ATP-binding cassette

homology] [OR:

Archaeoglobus

fulgidus

]

Contig067G

13875000_f1_328

231

4357

225

74

NO-HIT

Contig067G

13961502_c3_907

232

4358

672

223

NO-HIT

Contig067G

14297265_c1_610

233

4359

1071

356

546

1.00E−52

pir:[LN:S47741]

[AC:S47741:D65150]

[PN:hypothetical transcription

regulator treF-kdgk intergenic

region:hypothetical protein o323]

[GN:yhjC] [OR:

Escherichia coli

]

Contig067G

14304175_c1_619

234

4360

1200

399

960

1.40E−96

gp:[GI:e1420018:g4539191]

[LN:SC6A5] [AC:AL049485]

[PN:probable acyl-CoA

dehydrogenase] [GN:SC6A5.36]

[OR:

Streptomyces coelicolor

]

[DE:

Streptomyces coelicolor

cosmid 6A5.] [NT:SC6A5.36

probable acyl-CoA dehydrogenase,

len:]

Contig067G

1439650_f1_30

235

4361

1440

479

1563

1.70E−160

sp:[LN:YEGQ_ECOLI]

[AC:P76403:008007:008010]

[GN:YEGQ] [OR:

ESCHERICHIA

COLI

] [EC:3.4.—.—]

[DE:PUTATIVE PROTEASE IN

BAER-OGRK INTERGENIC

REGION,]

[SP:P76403:008007:008010]

Contig067G

14542165_c2_680

236

4362

234

77

NO-HIT

Contig067G

14585177_c3_849

237

4363

1470

489

1765

6.80E−182

sp:[LN:GLNA_AZOVI]

[AC:P22248] [GN:GLNA]

[OR:

AZOTOBACTER

VINELANDII

] [EC:6.3.1.2]

[DE:GLUTAMINE

SYNTHETASE, (GLUTAMATE--

AMMONIA LIGASE)]

[SP:P22248]

Contig067G

14656332_c2_758

238

4364

240

79

NO-HIT

Contig067G

14729817_c3_763

239

4365

2034

677

2351

5.40E−244

sp:[LN:UVRB_PSEAE]

[AC:P72174:P72147] [GN:UVRB]

[OR:

PSEUDOMONAS

AERUGINOSA

]

[DE:EXCINUCLEASE ABC

SUBUNIT B]

[SP:P72174:P7247]

Contig067G

14730307_f2_210

240

4366

471

156

155

2.70E−11

sp:[LN:YGBO_YEAST]

[AC:P25338]

[GN:YGL010W:YGL021]

[OR:

SACCHAROMYCES

CEREVISIAE

] [SR:,BAKER'S

YEAST] [DE:HYPOTHETICAL

20.2 KD PROTEIN IN PRS2-

LEU1 INTERGENIC REGION]

[SP:P25338]

Contig067G

14977187_c3_785

241

4367

1095

364

326

2.10E−29

pir:[LN:J70590] [AC:H70590]

[PN:hypothetical protein Rv3230c]

[GN:Rv3230c]

[OR:

Mycobacterium tuberculosis

]

Contig067G

15031302_c1_522

242

4368

1320

439

1452

9.90E−149

sp:[LN:GSA_PSEAE]

[AC:P48247] [GN:HEML]

[OR:

PSEUDOMONAS

AERUGINOSA

] [EC:5.4.3.8]

[DE:(GLUTAMATE-1-

SEMIALDEHYDE

AMINOTRANSFERASE) (GSA-

AT)] [SP:P48247]

Contig067G

15039077_f1_160

243

4369

1845

614

NO-HIT

Contig067G

15790912_f3_488

244

4370

660

219

169

9.00E−13

gp:[GI:e1326345:g3688206]

[LN:CAJ10321] [AC:AJ010321]

[PN:cicA protein] [GN:cicA]

[OR:

Caulobacter crescentus

]

[DE:

Caulobacter crescentus

partial

tig gene and clpP, cicA, clpX,

longenes.]

Contig067G

15837765_c1_585

245

4371

2772

923

781

1.30E−77

gp:[GI:g1397291]

[LN:CELF49E8] [AC:U61949]

[GN:F49E8.3] [OR:

Caenorhabditis

elegans

] [SR:

Caenorhabditis

elegans

strain=Bristol N2]

[DE:

Caenorhabditis elegans

cosmid F49E8.] [NT:coded for by

C. elegans

cDNA yk2g1.3; coded

for by]

Contig067G

158562_c3_904

246

4372

1158

385

150

9.80E−08

sp:[LN:GSPL_KLEPN]

[AC:P15751] [GN:PULL]

[OR:

KLEBSIELLA

PNEUMONIAE

] [DE:PULL)]

[SP:P15751]

Contig067G

16047936_f1_26

247

4373

2445

814

1217

7.90E−124

pir:[LN:ZPECPB]

[AC:E64738:A03417:545218:B22

950] [PN:penicillin-binding

protein IB:peptidoglycan

synthetase] [GN:mrcB:ponB]

[CL:penicillin-binding protein IB]

[OR:

Escherichia coli

]

Contig067G

16422177_f2_294

248

4374

1068

355

187

3.20E−12

pir:[LN:D69771] [AC:D69771]

[PN:conserved hypothetical

protein ybdl] [GN:ybdl]

[OR:

Bacillus subtilis

]

Contig067G

16448377_f1_28

249

4375

348

115

NO-HIT

Contig067G

16525251_c1_623

250

4376

216

71

225

1.00E−18

sp:[LN:CAPB_PSEFR]

[AC:P80415:P72189] [GN:CAPB]

[OR:

PSEUDOMONAS FRAGI

]

[DE:COLD SHOCK PROTEIN

CAPB (COLD ACCLIMATION

PROTEIN B) (C8.0)

[SP:P80415:P72189]

Contig067G

16594687_c2_734

251

4377

1275

424

NO-HIT

Contig067G

16832175_f1_1

252

4378

888

295

487

1.80E−46

pir:[LN:S76006] [AC:S76006]

[PN:hypothetical protein]

[OR:Synechocystis sp.] [SR:PCC

6803,, PCC 6803] [SR:PCC 6803,]

Contig067G

16834826_f3_439

253

4379

252

83

NO-HIT

Contig067G

16986250_f1_53

254

4380

741

246

405

8.80E−38

[AC:P44627] [GN:HI0303]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

HI0303] [SP:P44627]

Contig067G

17182_f1_47

255

4381

1401

466

793

6.80E−79

sp:[GI:g3005576] [LN:AF047718]

[AC:AF047718] [PN:putative high

affinity nitrate transporter]

[GN:NRT2] [OR:Glycine max]

[DE:Glycine max putative high

affinity nitrate transporter (NRT2)

mRNA,complete cds.]

[NT:BmNRTs]

Contig067G

180443_f3_358

256

4382

1461

486

1182

4.10E−120

gp:GI:g1061410]

[LN:BCU38944] [AC:U38944]

[PNLOpcM] [GN:opcM]

[OR:

Burkholderia cepacia

]

[SR:

Burkholderia cepacia

strain=PC138] [DE:

Burkholderia

cepacia

outer membrane

lipoprotein (opcM) gene,partial

cds.] [NT:outer membrane

lipoprotein] [RE:

Contig067G

19531453_f3_456

257

4383

594

197

577

5.20E−56

sp:[LN:YRDA_ECOLI]

[AC:P45770] [GN:YRDA]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 28.4 KD

PROTEIN IN RRND-AROE

INTERGENIC REGION (O256)]

[SP:P45770]

Contig067G

19535212_f1_78

258

4384

195

64

NO-HIT

Contig067G

19562692_f2_278

259

4385

657

218

204

1.80E−16

sp:[LN:YJDF_ECOLI]

[AC:P39270] [GN:YJDF]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 23.4 KD

PROTEIN IN MELB-FUMB

INTERGENIC REGION (F209)]

[SP:P39270]

Contig067G

19645887_f1_17

260

4386

669

222

175

2.10E−13

pir:[LN:D71706] [AC:D71706]

[PN:hypothetical protein RP471]

[GN:RP471] [OR:

Rickettsia

prowazekii

]

Contig067G

196886_c1_628

261

4387

432

143

356

1.40E−32

sp:[LN:GCP_HAEIN]

[AC:P43764] [GN:GCP:H10530]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:3.4.24.57]

[DE:(GLYCOPROTEASE)]

[SP:P43764]

Contig067G

198515_f2_207

262

4388

948

315

952

9.60E−96

sp:[LN:YADG_ECOLI]

[AC:P36879] [GN:YADG]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL ABC

TRANSPORTER ATP-BINDING

PROTEIN YADG] [SP:P36879]

Contig067G

20011716_f1_37

263

4389

219

72

NO-HIT

Contig067G

20509667_f1_109

264

4390

318

105

NO-HIT

Contig067G

20509677_f1_63

265

4391

1545

514

868

7.60E−87

sp:[LN:YCLF_BACSU]

[AC:P9440] [GN:YCLF]

[OR:

BACILLUS SUBTILIS

]

[DE:HYPOTHETICAL 53.3 KD

PROTEIN IN SFP-GERKA

INTERGENIC REGION]

[SP:P94408]

Contig067G

20579375_f1_48

266

4392

1290

429

442

1.10E−41

pir:[LN:G69748] [AC:G69748]

[PN:conserved hypothetical

protein ybfB] [GN:ybfB]

[OR:

Bacillus subtilis

]

Contig067G

20589375_c3_838

267

4393

489

162

NO-HIT

Contig067G

2070963_c3_786

268

4394

1107

368

851

4.80E−85

pir:[LN:G70590] [AC:G70590]

[PN:probable desA3 protein]

[GN:desA3] [OR:

Mycobacterium

tuberculosis

]

Contig067G

20735677_c3_769

269

4395

1032

343

892

2.20E−89

gp:[GI:g3885440] [LN:AF040378]

[AC:AF040378] [PN:yhdG

homolog] [OR:

Serratia

marcescens

] [DE:

Serratia

marcescens

ribosomal protein L11

methyltransferase (prmA)gene,

partial cds; and yhdG homolog and

small DNA binding proteinFis (fis)

genes, complete cds.] [NT:Orf1]

Contig067G

20736002_f2_199

270

4396

1467

488

729

4.10E−72

gp:[GI:e1331956:g4106587]

[LN:YP102KB] [AC:AL031866]

[OR:

Yersinia pestis

] [DE:

Yersinia

pestis

102 kbases unstable region:

from 1 to 119443.] [NT:ORF19.

len: 473, similar to tyrosine]

Contig067G

21484427_f2_186

271

4397

183

60

NO-HIT

Contig067G

21494140_c1_574

272

4398

1260

419

636

2.90E−62

gp:[GI:e1364859:g4150886]

[LN:PFFBSCEAB] [AC:Y09356]

[PN:isochorismate synthase]

[GN:fbsC] [OR:

Pseudomonas

fluorescens

] [DE:

Pseudomonas

fluorescens

fbsC, fbsE, fbsA and

fbsB genes.]

Contig067G

21531532_c1_550

273

4399

537

178

NO-HIT

Contig067G

21572153_f1_146

274

4400

387

128

NO-HIT

Contig067G

21616337_c1_518

275

4401

2835

944

327

2.40E−28

pir:[LN:D64646] [AC:D64646]

[PN:proteinase,] [OR:

Helicobacter

pylori

] [EC:3.4.—.—]

Contig067G

21681562_c3_828

276

4402

2307

763

1653

5.00E−170

sp:[LN:FATA_VIBAN]

[AC:P11461:P19830] [GN:FATA]

[OR:

VIBRIO ANGUILLARUM

]

[DE:FERRIC ANGUIBACTIN

RECEPTOR PRECURSOR

(OM2)] [SP:P11461:P19830]

Contig067G

21687515_c2_652

277

4403

411

136

NO-HIT

Contig067G

21719001_c3_790

278

4404

1134

377

407

5.40E−38

pir:[LN:140842] [AC:140842]

[PN:hypothetical protein]

[OR:

Cowdria ruminantium

] [SR:.

heartwater

rickettsia

]

Contig067G

22033517_c2_673

279

4405

330

109

151

7.30E−11

sp:[LN:YBDD_ECOLI]

[AC:P23518] [GN:YBDD]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 7.5 KD

PROTEIN IN CSTA-AHPC

INTERGENIC REGION]

[SP:P23518]

Contig067G

22165108_c1_515

280

4406

2292

763

3038

0

pir:[LN:C70848] [AC:C70848]

[PN:probable icd2 protein]

[GN:icd2] [OR:

Mycobacterium

tuberculosis

]

Contig067G

22365625_c1_551

281

4407

708

235

293

6.50E−26

gp:[GI:d1037663:g4126656]

[LN:AB016282] [AC:AB016282]

[OR:bacteriophage phi-105]

[SR:bacteriophage phi-105 DNA]

[DE:Bacteriophage phi-105 DNA,

complete sequence.] [NT:ORF19]

Contig067G

22384712_c1_517

282

4408

1428

475

1875

1.50E−193

pir:[LN:A64932] [AC:A64932]

[PN:hypothetical protein b1729]

[CL:

Bacillus subtilis

sodium-

glutamate symporter homolog

yhcL] [OR:

Escherichia coli

]

Contig067G

22454703_c2_700

283

4409

735

244

249

3.00E−21

gp:[GI:d1037670:g4126668]

[LN:AB016427] [AC:AB016427]

[PN:thioesterase II-like protein]

[GN:bacT] [OR:

Bacillus

licheniformis

] [SR:

Bacillus

licheniformis

(strain:ATCC 10716)

DNA] [DE:

Bacillus licheniformis

genes for transmembrane

protein,thioesterase II-like protein

and bacitracin synthetase I

(BA1),complete and partial cds]

Contig067G

22456540_f3_332

284

4410

222

73

NO-HIT

Contig067G

22461086_c3_891

285

4411

675

224

452

9.20E−43

sp:[LN:YGIX_ECOLI]

[AC:P52076] [GN:YGIX]

[OR:

ESCHERICHIA COLI

]

[DE:PROBABLE

TRANSCRIPTIONAL

REGULATORY PROTEIN

YGIX] [SP:P52076]

Contig067G

22553137_c2_661

286

4412

2205

734

323

1.80E−25

gp:[GI:g2286204] [LN:AF011339]

[AC:AF011339] [PN:unknown]

[OR:Acinetobacter sp ADPI]

[DE:Acinetobacter sp. ADPI

unknown protein gene. partial cds.]

[RE:

Contig067G

22687837_c1_580

287

4413

990

329

144

6.60E−11

pir:[LN:C65071] [AC:C65071]

[PN:hypothetical protein b2875]

[OR:

Escherichia coli

]

Contig067G

22703125_c3_837

288

4414

801

266

444

6.50E−42

pir:[LN:E69897] [AC:E69897]

[PN:hypothetical protein yoaT]

[GN:yoaT] [OR:

Bacillus subtilis

]

Contig067G

22938511_f3_481

289

4415

1371

456

420

6.70E−45

sp:[LN:DACA_HAEIN]

[AC:P44466] [GN:DACA:H10029]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:3.4.16.4]

[DE:(DD-

CARBOXYPEPTIDASE) (PBP-

5)] [SP:P44466]

Contig067G

22947590_f1_159

290

4416

1311

436

682

3.90E−67

pir:[LN:D69769] [AC:D69769]

[PN:cellulose synthase homolog

ydaM] [GN:ydaM] [OR:

Bacillus

subtilis

]

Contig067G

23438802_f2_227

291

4417

618

205

975

3.50E−98

sp:[LN:TRPG_ACICA]

[AC:P00902] [GN:TRPG]

[OR:

ACINETOBACTER

CALCOACETICUS

]

[EC:4.1.3.27]

[DE:TRANSFERASE)]

[SP:P00902]

Contig067G

23453127_c1_617

292

4418

441

146

169

9.00E−13

sp:[LN:YGIW_ECOLI]

[AC:P52083] [GN:YGIW]

[OR:

ESCHERICHIA COLI

]

[DE:11.9 KD PROTEIN IN PARC-

MDAB INTERGENIC REGION

PRECURSOR (F130)]

[SP:P52083]

Contig067G

23453136_f1_24

293

4419

963

320

326

2.10E−29

pir:[LN:B70013] [AC:B70013]

[PN:hypothetical protein yuil]

[GN:yuil] [OR:

Bacillus subtilis

]

Contig067G

23470135_f3_475

294

4420

1248

415

378

6.40E−35

gp:[GI:g4154820] [LN:AE001466]

[AC:AE001466:AE001439]

[PN:putative] [GN:jhp0298]

[OR:

Helicobacter pylori

J99]

[DE:

Helicobacter pylori

, strain J99

section 27 of 132 of the

completegenome] [NT:similar to

H. pylori

26695 gene HP0313]

Contig067G

23476637_c2_688

295

4421

2589

862

NO-HIT

Contig067G

2353452_c3_804

296

4422

390

129

NO-HIT

Contig067G

23563450_f2_177

297

4423

462

153

366

1.20E−33

gp:[GI:g1575483]

[LN:LPU63641] [AC:U63641]

[LN:porfX] [GN:lporfX]

[FN:unknown] [OR:

Legionella

pneumophila

] [DE:

Legionella

pneumophila

rpofD operon LporfX,

LpdnaG, and LprpoDgenes,

complete cds.]

Contig067G

23625287_f2_321

298

4424

723

240

185

1.80E−22

sp:[LN:NO21_SOYBN]

[AC:P16313] [OR:GLYCINE

MAX] [DE:NODULIN 21 (N-21)]

[SP:P16313]

Contig067G

23634427_c3_835

299

4425

777

258

138

1.40E−07

gp:[GI:e1388120:g4455682]

[LN:MLCBS96] [AC:AL035472]

[PN:putative iron-chelating

complex subunit.]

[GN:MLCB596.23]

[OR:

Mycobacterium leprae

]

[DE:

Mycobacterium leprae

cosmid

B596.] [NT:MLCB596.23,

possible iron-chelating complex]

Contig067G

23646087_f2_338

300

4426

459

152

207

8.50E−17

sp:[LN:YGDD_HAEIN]

[AC:P45019] [GN:HI1073]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

HI1073] [SP:P45019]

Contig067G

23712832_c2_681

301

4427

1275

424

472

7.00E−45

sp:[LN:VP3_BPHK7]

[AC:P49859] [GN:3]

[OR:BACTERIOPHAGE HK97]

[DE:PORTAL PROTEIN (GP3)]

[SP:P49859]

Contig067G

23992036_f1_42

302

4428

225

74

NO-HIT

Contig067G

24103412_f1_150

303

4429

414

137

NO-HIT

Contig067G

24114717_f1_39

304

4430

786

261

805

3.60E−80

sp:[LN:YADH_ECOLI]

[AC:P36880:P75657]

[GN:YADH] [OR:

ESCHERICHIA

COLI

] [DE:HYPOTHETICAL

28.5 KD PROTEIN IN HPT-

PAND INTERGENIC REGION]

[SP:P36880:P75657]

Contig067G

24219180_c3_806

305

4431

549

182

139

1.40E−09

pir:[LN:D70541] [AC:D70541]

[PN:hypothetical protein Rv1578c]

[GN:Rv1578c]

[OR:

Mycobacterium tuberculosis

]

Contig067G

24250260_c1_616

306

4432

1788

595

905

9.20E−91

pir:[LN:B70469] [AC:B70469]

[PN:type IV pilus assembly protein

TapB] [GN:tapB] [CL:secretion

protein xcpR] [OR:

Aquifex

aeolicus

]

Contig067G

24257830_c2_727

307

4433

345

114

NO-HIT

Contig067G

24265832_f3_368

308

4434

861

286

820

9.30E−82

sp:[LN:AMPM_ECOLI]

[AC:P07906] [GN:MAP]

[OR:

ESCHERICHIA COLI

]

[EC:3.4.11.18]

[DE:METHIONINE

AMINOPEPTIDASE, (MAP)

(PEPTIDASE M)] [SP:P07906]

Contig067G

24267130_f2_248

309

4435

2163

720

575

3.10E−54

gp:[GI:e307537:g2052277]

[LN:SVSNBDE] [AC:Y11547]

[PN:

Virginiamycin S synthetase

]

(GN:snbDE] [OR:

Streptomyces

virginiae

] [DE:

S.virginiae

snbDE

gene, partial.] [RE:

Contig067G

24274177_c3_819

310

4436

294

97

NO-HIT

Contig067G

24391592_f1_172

311

4437

450

149

143

5.10E−10

pir:[LN:F69365] [AC:F69365]

[PN:conserved hypothetical

protein AF0926]

[OR:

Archaeoglobus fulgidus

]

Contig067G

24395328_c2_677

312

4438

1779

592

NO-HIT

Contig067G

24399143_c3_831

313

4439

939

312

698

7.90E−69

sp:[LN:ENTB_ECOLI]

[AC:P15048] [GN:ENTB:ENTG]

[OR:

ESCHERICHIA COLI

]

[EC:3.3.2.1] [DE:SYNTHASE)]

[SP:P15048]

Contig067G

24410636_f1_156

314

4440

768

255

NO-HIT

Contig067G

24423762_f3_453

315

4441

384

127

NO-HIT

Contig067G

24431500_c2_667

316

4442

2193

730

516

8.80E−97

gp:[GI:g4456996] [LN:AF082985]

[AC:AF082985] [PN:permease for

AmpC beta-lactamase expression]

[GN:ampG] [FN:cell wall

recycling] [OR:

Pseudomonas

aeruginosa

] [DE:Pseudomonas

aeruginosa

permease for AmpC

beta-lactamase expressionAmpG

(ampG) gene. complete cds; and

unknown gene.]

Contig067G

24489752_f2_268

317

4443

309

102

NO-HIT

Contig067G

24642052_c1_568

318

4444

975

324

1113

8.30E−113

sp:[LN:FATB_VIBAN]

[AC:P11460] [GN:FATB]

[OR:

VIBRIO ANGUILLARUM

]

[DE:FERRIC ANGUIBACTIN-

BINDING PROTEIN

PRECURSOR] [SP:P11460]

Contig067G

24642055_f3_357

319

4445

3186

1061

4231

0

gp:[GI:g2109271]

[LN:BCU97042] [AC:U97042]

[PN:CeoB] [GN:ceoB]

[OR:

Burkholderia cepacia

]

[DE:

Burkholderia cepacia

CeoA

(ceoA) and CeoB (ceoB) genes,

completecds.] [NT:similar to

cyloplasmic membrane proteins of

the RND]

Contig067G

24644137_c1_571

320

4446

1635

544

1983

5.40E−205

gp:[GI:c1371504:g4165301]

[LN:PFFBSCFAB] [AC:Y09356]

[PN:ATP-dependent activating

enzyme] [GN:fbsE]

[OR:

Pseudomonas fluorescens

]

[DE:

Pseudomonas fluorescens

fbsC, fbsE, fbsA and fbsB genes.]

Contig067G

24644752_f3_345

321

4447

1020

339

273

8.60E−24

pir:[LN:E70319] [AC:E70319]

[PN:phosphoribosylanthranilate

transferase] [GN:trpD2]

[OR:

Aquifex aeolicus

]

Contig067G

24645325_c1_625

322

4448

594

197

134

4.60E−09

sp:[LN:CVPA_HAEIN]

[AC:P45108] [GN:CVPA:HI1206]

[DR:

HAEMOPHILUS

INFLUENZAE

] [DE:COLICIN V

PRODUCTION PROTEIN

HOMOLOG] [SP:P45108]

Contig067G

24648437_f1_108

323

4449

465

154

NO-HIT

Contig067G

24650328_f1_115

324

4450

1749

582

NO-HIT

Contig067G

24689678_c1_611

325

4451

846

281

690

5.60E−68

sp:[LN:ARGT_SALTY]

[AC:P02911] [GN:ARGT]

[OR:

SALMONELLA

TYPHIMURIUM

] [DE:(LAO-

BINDING PROTEIN)]

[SP:P02911]

Contig067G

24782911_c2_632

326

4452

201

66

NO-HIT

Contig067G

25391937_c3_832

327

4453

189

62

NO-HIT

Contig067G

25395433_f2_270

328

4454

183

60

NO-HIT

Contig067G

25411003_c2_674

329

4455

204

67

NO-HIT

Contig067G

25414165_c2_656

330

4456

2856

951

1042

1.90E−201

sp:[LN:HEPA_ECOLI]

[AC:P23852:P75633]

[GN:HEPA:RAPA]

[OR:

ESCHERICHIA COLI

]

[DE:RNA POLYMERASE

ASSOCIATED PROTEIN (ATP-

DEPENDENT HELICASE

HEPA)] [SP:P23852:P75633]

Contig067G

25421925_c3_801

331

4457

2118

705

2228

5.80E−231

sp:[LN:CSTA_ECOLI]

[AC:P15078:P23517:P77740]

[GN:CSTA] [OR:

ESCHERICHIA

COLI

] [DE:CARBON

STARVATION PROTEIN A]

[SP:P15078:P23517:P77740]

Contig067G

25509652_c3_761

332

4458

183

60

NO-HIT

Contig067G

25525292_c3_902

333

4459

1077

358

648

1.60E−63

sp:[LN:GPDA_BACSU]

[AC:P46919] [GN:GPSA:GLYC]

[OR:

BACILLUS SUBTILIS

]

[EC:1.1.1.94] [DE:DEPENDENT

DIHYDROXYACETONE-

PHOSPHATE REDUCTASE)]

[SP:P46919]

Contig067G

25547177_f2_237

334

4460

1170

389

846

1.60E−84

sp:[LN:AMPC_PSEAE]

[AC:P24735] [GN:AMPC]

[OR:

PSEUDOMONAS

AERUGINOSA

] [EC:3.5.2.6]

[DE:BETA-LACTAMASE

PRECURSOR,

(CEPHALOSPORINASE)]

[SP:P24735]

Contig067G

25547180_f2_252

335

4461

1305

434

789

1.80E−78

gp:[GI:g862633] [LN:XXU13633]

[AC:U13633] [PN:RumB(R391)]

[GN:rumB(R391)] [OR:incJ

plasmid R391] [DE:incJ plasmid

R391 rumA(R391) and

rumB(R391) genes, complete cds.]

[NT:similar to

Escherichia coli

UmuC, Swiss-Prot]

Contig067G

25600337_c1_528

336

4462

1782

593

1052

2.40E−106

sp:[LN:DCP3_YEAST]

[AC:P26263]

[GN:PDC6:YGR087C]

[OR:

SACCHAROMYCES

CEREVISIAE

] [SR:,BAKER'S

YEAST] [EC:4.1.1.1]

[DE:PYRUVATE

DECARBOXYLASE ISOZYME

3,] [SP:P26263]

Contig067G

25626568_c2_683

337

4463

546

181

NO-HIT

Contig067G

25781552_c2_650

338

4464

858

285

379

5.00E−35

gp:[GI:g3850584] [LN:F15K9]

[AC:AC005278] [GN:F15K9.19]

[OR:

Arabidopsis thaliana

]

[SR:thale cress] [DE:

Arabidopsis

thaliana

chromosome 1 BAC

F15K9 sequence,

completesequence.] [NT:ESTs

gb|H37641 and gb|AA651422

come from this]

Contig067G

25830327_f3_364

339

4465

813

270

584

9.50E−57

sp:[LN:YQCD_HAEIN]

[AC:P44153] [GN:HI1291]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

HI1291] [SP:P44153]

Contig067G

25976425_c1_567

340

4466

855

284

660

8.40E−65

pir:[LN:D69763] [AC:D69763]

[PN:ferrichrome ABC transporter

(ATP-binding p) homolog yclP]

[GN:yclP] [CL:ATP-binding

cassette homology] [OR:

Bacillus

subtilis

]

Contig067G

25977250_f3_380

341

4467

1815

604

1015

2.00E−102

gp:[GI:g2760920] [LN:AF038591]

[AC:AF038591] [PN:

cytoplasmic

aminopeptidase

P] [GN:APP]

[OR:

Rattus norvegicus

]

[SR:Norway rat] [DE:

Rattus

norvegicus

cytoplasmic

aminopeptidase P (APP) mRNA,

completecds.]

Contig067G

26019126_c2_754

342

4468

1560

519

1618

2.60E−166

pir:[LN:XQEC]

[AC:F65003:A92366:A92367:S01

389:151823:A00581]

[PN:amidophosphoribosyltransfera

se,] [GN:purF]

[CL:amidophosphoribosyltransfera

se] [OR:

Escherichia coli

]

[EC:2.4.2.14] [MP:49 min]

Contig067G

26027132_c2_713

343

4469

540

179

162

5.00E−12

sp:[LN:UBIC_ECOLI]

[AC:P26602:P76783] [GN:UBIC]

[OR:

ESCHERICHIA COLI

]

[EC:4.—.—.—] [DE:CHORISMATE--

PYRUVATE LYASE,]

[SP:P26602:P76783]

Contig067G

26172333_c3_767

344

4470

1251

416

1089

2.90E−110

sp:[LN:YHBZ_ECOLI]

[AC:P42641] [GN:YHBZ]

[OR:

ESCHERICHIA COLI

]

[DE:REGION] [SP:P42641]

Contig067G

26181537_c3_842

345

4471

1503

500

807

2.20E−80

gp:[GI:e1254996:g2956674]

[LN:RCXDHAB] [AC:AJ001013]

[PN:xanthine dehydrogenase]

[GN:xdhA] [OR:

Rhodobacter

capsulatus

] [EC:1.1.1.204]

[DE:

Rhodobacter capsulatus

dnaE

and xdhA and B genes.]

Contig067G

26219625_c3_771

346

4472

1239

412

NO-HIT

Contig067G

26365675_f1_79

347

4473

384

127

NO-HIT

Contig067G

26365827_c2_694

348

4474

1848

615

622

1.60E−59

gp:[GI:g2982194] [LN:AF007865]

[AC:AF007865] [PN:

bacitracin

synthetase

1] [GN:bacA]

[OR:

Bacillus licheniformis

]

[DE:

Bacillus licheniformis

bacitracin synthetase

operon,

completesequence; BacS (bacS),

BcrA (bcrA), BcrB (bcrB), and

BcrC (bcrC)genes, complete cds]

[NT:peptide synthetase: BA1;

BacA]

Contig067G

26385913_c3_788

349

4475

1446

481

876

1.10E−87

gp:[GI:e1370586:g4158187]

[LN:SC9B5] [AC:AL035206]

[PN:putative aldehyde

dehydrogenase] [GN:SC9B5.08]

[OR:

Streptomyces coelicolor

]

[DE:

Streptomyces coelicolor

cosmid 9B5.] [NT:SC9B5.08,

probable aldehyde dehydrogenase,

len:]

Contig067G

26441076_c1_525

350

4476

651

216

138

5.80E−09

pir:[LN:C70487] [AC:C70487]

[PN:transcription regulator

TetR/AcrR family] [GN:acrR2]

[OR:

Aquifex aeolicus

]

Contig067G

26453950_f2_266

351

4477

444

147

NO-HIT

Contig067G

26648452_c1_549

352

4478

522

173

NO-HIT

Contig067G

26751500_c3_815

353

4479

2664

887

156

1.60E−07

sp:[LN:MYSP_BRUMA]

[AC:Q01202:P90711]

[OR:

BRUGIA MALAYI

]

[DE:PARAMYOSIN]

[SP:Q01202:P90711]

Contig067G

26756250_f3_469

354

4480

720

239

138

1.60E−07

pir:[LN:S74325] [AC:S74325]

[PN:hypothetical protein slr0431]

[OR:Synechocystis sp.] [SR:PCC

6803., PCC 6803] [SR:PCC 6803,]

Contig067G

26769687_c3_768

355

4481

149

382

734

1.20E−72

sp:[LN:PROB_HAEIN]

[AC:P43763] [GN:PROB:H10900]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:2.7.2.11]

[DE:GLUTAMATE 5-KINASE

(GAMMA-GLUTAMYL

KINASE) (GK)] [SP:P43763]

Contig067G

2734561_f3_376

356

4482

789

262

613

8.00E−60

sp:[LN:YBGI_HAEIN]

[AC:Q57354:O05008]

[GN:HI0105]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

HI0105] [SP:Q57354:005008]

Contig067G

2819758_c3_805

357

4483

255

84

NO-HIT

Contig067G

2915936_f3_403

358

4484

2946

981

633

2.20E−57

pir:[LN:B70674] [AC:B70674]

[PN:probable mbtB protein]

[GN:mbtB] [CL:oleoyl-[acyl-

carrier-protein] hydrolase

homology] [OR:

Mycobacterium

tuberculosis

]

Contig067G

2929628_c1_556

359

4485

330

109

NO-HIT

Contig067G

29304581_c1_598

360

4486

792

263

204

1.80E−16

sp:[LN:YH55_ARCFU]

[AC:028519] [GN:AF1755]

[OR:

ARCHAEOGLOBUS

FULGIDUS

]

[DE:HYPOTHETICAL PROTEIN

AF1755] [SP:028519]

Contig067G

29312687_c3_853

361

4487

1203

400

801

9.60E−80

gp:[GI:g1184675]

[LN:PAU29172] [AC:U29172]

[PN:AlgW] [OR:

Pseudomonas

aeruginosa

] [DE:

Pseudomonas

aeruginosa

HtrA-like serine

protease AlgW gene,complete

cds.] [NT:HtrA-like serine

protease]

Contig067G

29331376_f3_457

362

4488

1158

385

1240

2.90E−126

sp:[LN:TRMU_ECOLI]

[AC:P25745:P75964]

[GN:TRMU:ASUE]

[OR:

ESCHERICHIA COLI

]

[EC:2.1.1.61] [DE:(EC2.1.1.61)]

[SP:P25745:P75964]

Contig067G

29490641_f1_454

363

4489

477

158

NO-HIT

Contig067G

29495915_c2_752

364

4490

483

160

129

1.60E−08

gp:[GI:d1016922:g1799731]

[LN:D90864]

[AC:D90864:AB001340]

[OR:

Escherichia coli

]

[SR:

Escherichia coli

(strain:K12)

DNA, clone_lib:Kohara lambda

minise] [DE:

E.coli

genomic DNA,

Kohara clone #409(52.8-53.1

min.).] [NT:similar to [SwissProt

Accession Number P44164]]

Contig067G

29505090_c2_753

365

4491

510

169

NO-HIT

Contig067G

29567813_c3_787

366

4492

1578

525

2613

9.30E−272

gp:[GI:d1010181:g893355]

[LN:ACCL24DD] [AC:D55724]

[PN:L-2,4-diaminobutyrate

decarboxylase] [OR:

Acinetobacter

baumannii] [SR:

Acinetobacter

baumannii

(strain:ATCC19606)

DNA, clone:pBDD7]

[DE:

Acinetobacter baumannii

gene

for L-2,4-

diaminobutyratedecarboxylase,

complete cds.] [NT:Translated

amino acid sequence homologous

to]

Contig067G

29854563_f3_361

367

4493

696

231

NO-HIT

Contig067G

30207250_f3_351

368

4494

324

107

296

3.10E−26

sp:[LN:YFHL_HAEIN]

[AC:P44746] [GN:HI0527]

[OR:

HAEMOPHILUS

INFLUENZAE

] [DE:PUTATIVE

FERREDOXIN-LIKE PROTEIN

H10527] [SP:P44746]

Contig067G

30281575_f3_483

369

4495

504

167

425

8.40E−43

sp:[LN:SLYD_ECOLI]

[AC:P30856] [GN:SLYD]

[OR:

ESCHERICHIA COLI

]

[EC:5.2.1.8] [DE:(PPIASE)

(ROTAMASE) (HISTIDINE

RICH PROTEIN) (WHP)]

[SP:P30856]

Contig067G

30353162_c3_822

370

4496

669

222

91

0.00049

gp:[GI:g1079814] [LN:579230]

[AC:579230] [PN:BMIPI]

[PN:CYP106] [OR:

Bacillus

megaterium

]

[DE:CYP106=BMIP2

orf...CYP106=P450BM-1 orf

{regulatory regions}[

Bacillus

megaterium

, mRNA Partial, 3

genes, 1400 nt].] [NT:positive

transcription factor involved in]

Contig067G

30640933_c1_546

371

4497

1143

380

364

2.00E−33

sp:[LN:YF72_HAEIN]

[AC:P46495] [GN:HI1572]

[OR:

HAEMOPHILUS

INFLUENZAE

] [DE:PUTATIVE

INTEGRASE/RECOMBINASE

HI1572] [SP:P46495]

Contig067G

30709575_c1_579

372

4498

2397

798

1868

8.20E−193

gp:[GI:e1254997:g2956675]

[LN:RCXDHAB] [AC:AJ001013]

[PN:

xanthine dehydrogenase

]

[GN:xdhB] [OR:

Rhodobacter

capsulatus

] [EC:1.1.1.204]

[DE:

Rhodobacter capsulatus

dnaE

and xdhA and B genes.]

Contig067G

31369000_c2_675

373

4499

210

69

NO-HIT

Contig067G

31376557_f3_369

374

4500

1146

381

86

0.0002

sp:[LN:OMPW_ECOLI]

[AC:P21364:P97217:P97220]

[GN:OMPW]

[OR:

ESCHERICHIA COLI

]

[DE:OUTER MEMBRANE

PROTEIN W PRECURSOR]

[SP:P21364:P97217:P97220]

Contig067G

31457267_c2_695

375

4501

1023

340

913

1.30E−91

sp:[LN:FATC_VIBAN]

[AC:P37737] [GN:FATC]

[OR:

VIBRIO ANGUILLARUM

]

[DE:FERRIC ANGUIBACTIN

TRANSPORT SYSTEM

PERMEASE PROTEIN FATC]

[SP:P37737]

Contig067G

3182886_c2_736

376

4502

222

73

NO-HIT

Contig067G

32039042_f2_184

377

4503

861

286

728

5.20E−72

pir:[LN:B70487] [AC:B70487]

[PN:thiamine biosynthesis.

thiazole moiety] [GN:thiG]

[CL:thiamine biosynthesis protein

thiG] [OR:

Aquifex aeolicus

]

Contig067G

32453153_c3_807

378

4504

1845

614

568

1.10E−58

gp:[GI:g3128374] [LN:AF010496]

[AC:AF010496] [PN:hypothetical

protein] [OR:

Rhodobacter

capsulatus

] [DE:

Rhodobacter

capsulatus

strain SB1003, partial

genome.]

Contig067G

32457802_c1_539

379

4505

408

135

536

1.20E−51

sp:[LN:LGUL_NEIME]

[AC:033393] [GN:GLOA]

[OR:

NEISSERIA

MENINGITIDIS

] [EC:4.4.1.5]

[DE:(S-D-

LACTOYLGLUTATHIONE

METHYLGLYOXAL LYASE)]

[SP:O33393]

Contig067G

32463455_c3_800

380

4506

231

76

246

6.20E−21

sp:[LN:RL31_HAEIN]

[AC:P44367]

[GN:RPME:RPL31:HI0758]

[OR:

HAEMOPHILUS

INFLUENZAE

] [DE:50S

RIBOSOMAL PROTEIN L31]

[SP:P44367]

Contig067G

3322066_c2_698

381

4507

1197

398

1488

1.50E−21

sp:[LN:RL31_HAEIN]

[AC:M62746] [PN:histidine

decarboxylase] [GN:hdc]

[OR:

Klebsiella planticola

]

]SR:

Klebsiella planticola

(library:

ATCC 43176) DNA]

[EC:4.1.1.22] [DE:

Klebsiella

planticola

pyridoxal phosphate-

dependent histidinedecarboxylase

(hdc) gene, complete cds.]

[NT:alpha-4 subunit]

Contig067G

3329818_f3_485

382

4508

909

302

NO-HIT

Contig067G

33397255_c2_651

383

4509

666

221

NO-HIT

Contig067G

33414037_f2_175

384

4510

1134

377

NO-HIT

Contig067G

33641702_c2_686

385

4511

543

180

NO-HIT

Contig067G

33987562_f1_70

386

4512

1269

422

173

1.90E−12

pir:[LN:S76259] [AC:S76259]

[PN:hypothetical protein]

[OR:Synechocystis sp.] [SR:PCC

6803,,PCC 6803] [SR:PCC 6803,]

Contig067G

34021875_c1_626

387

4513

1458

485

457

2.70E−43

pir:[LN:S76259] [AC:E650025]

[PN:hypothetical protein b2494]

[OR:

Escherichia coli

]

Contig067G

34026692_c1_572

388

4514

1623

540

387

2.00E−34

gp:[GO:g4097161]

[LN:PMU46488] [AC:U46488]

[PN:NrpA] [GN:nrpA]

[OR:

Proteus mirabilis

]

[DE:

Proteus mirabilis

NrpS (nrpS)

gene, partial cds, NrpU (nrpU),

NrpT(nrpT), NrpA (nrpA), NrpB

(nrpB), NrpG (nrpG) and IrpP

(irpP)genes, complete cds.]

Contig067G

34065667_f2_318

389

4515

1608

535

949

2.00E−95

sp:[LN:PHR_ECOLI]

[ACP00914] [GN:PHRB:PHR]

[OR:

ECHERICHIA COLI

]

[EC:4.1.99.3]

[DE:(PHOTOREACTIVATING

ENZYME)] [SP:P00914]

Contig067G

34117936_f3_371

390

4516

2478

825

1828

1.40E−188

pir:[LN:F64746] [AC:F64746]

[PN:probable membrane protein

b0221:hypothetical protein b0221]

[OR:

Echerichia coli

]

Contig067G

34179068_c2_633

391

4517

765

254

139

1.00E−06

gp:[GI:g767685]

[LN:PEXARTP60A] [AC:L41557]

[PN:articulin p60]

[OR:

Pseudomicrothorax dubius

]

[SR:

Pseudomicrothorax dubius

(strain N5b) (clone library:lambda

ZAP o] [DE:

Pseudomicrothorax

dubius

articulin p60 mRNA.

complete cds.] [NT:the authors do

not exclude the possibility that the]

Contig067G

34182627_c2_630

392

4518

519

172

NO-HIT

Contig067G

34245652_c1_506

393

4519

732

243

NO-HIT

Contig067G

34250087_c1_557

394

4520

390

129

NO-HIT

Contig067G

34375902_c2_746

395

4521

2277

758

954

5.90E−96

sp:[LN:AROA_BACSU]

[AC:P20691] [GN:AROE]

[OR:

BACILLUS SUBTILIS

]

[EC:2.51.19] [DE:(5-

ENOLPYRUVYLSHIKIMATE−3-

PHOSPHATE SYNTHASE)

(EPSP SYNTHASE)] [SP:P20691]

Contig067G

34407567_f3_385

396

4522

702

233

185

1.80E−14

pir:[LN:A65006] [AC:A65006]

[PN:hypothetical protein b2331]

[OR:

Escherichia coli

]

Contig067G

34407905_c1_526

397

4523

1380

459

2261

1.90E−234

gp:[GI:d1022701:g2340815]

[LN:AB001599] [AC:AB001599]

[PN:L-2,4-diaminobutvrate:2-

ketoglutarate] [OR:

Acinetobacter

baumannii

] [SR:

Acinetobacter

baumannii

(strain:ATCC 19606)

DNA, clone:pBDD71]

[DE:

Acinetobacter baumannii

DNA forL-2,4-diaminobutyrate:2-

ketoglutarate 4-aminotransferase.

completecds.] [NT:amino acid

sequence translated is homologous

to]

Contig067G

34556525_c1_555

398

4524

330

109

NO-HIT

Contig067G

34563905_f2_327

399

4525

1257

418

1074

1.10E−108

pir:[LN:B71718] [AC:B71718]

[PN:aspartate aminotransferase A

tA) RP091] [GNtA:RP091]

[OR:

Rickettsia prowazekii

]

Contig067G

34569017_c3_765

400

4526

963

320

509

8.40E−49

sp:[LN:Y680_HAEIN]

[AC:Q57389:O05030]

[GN:H10680]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

H10680] [SP:Q57389:O05030]

Contig067G

34640903_c1_564

401

4527

642

213

224

1.30E−18

sp:[LN:YHEO_HAEIN]

[AC:P44761] [GN:HI0575]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

HI0575] [SP:P44761]

Contig067G

35183130_f1_16

402

4528

246

81

95

6.30E−05

sp:[LN:YC40_PORPU]

[AC:P51344] [GN:YCF40]

[OR:

PORPHYRA PURPUREA

]

[DE:HYPOTHETICAL 8.1 KD

PROTEIN YCF40 (ORF71)]

[SP:P51344]

Contig067G

35197257_c1_624

403

4529

1017

338

950

1.60E−95

sp:[LN:PYRD_SALTY]

[AC:P25468] [GN:PYRD]

[OR:

SALMONELLA

TYPHIMURIUM

] [EC:1.3.3.1]

[DE:(DHODEHASE)]

[SP:P25468]

Contig067G

35290876_c2_684

404

4530

471

156

NO-HIT

Contig067G

35391255_f2_320

405

4531

936

311

NO-HIT

Contig067G

35426563_c1_530

406

4532

1398

465

583

1.20E−56

pir:[LN:D69419] [AC:D69419]

[PN:phosphate ABC transporter,

permease protein (pstC) homolog]

[OR:

Archaeoglobus fulgidus

]

Contig067G

35806517_c1_521

407

4533

615

204

286

3.60E−25

sp:[LN:THIE_SYNY3]

[AC:P72965]

[GN:THIE:SLL0635]

[OR:SYNECHOCYSTIS SP]

[SR:PCC 6803,] [EC:2.5.1.3]

[DE:PYROPHOSPHORYLASE)

(TMP-PPASE) (THIAMIN-

PHOSPHATE SYNTHASE))

[SP:P72965]

Contig067G

35817637_c3_895

408

4534

933

310

628

2.10E−61

pir:[LN:B65040] [AC:B65040]

[PN:yfjB protein] [GN:yfjB]

[CL:conserved hypothetical

protein HI0072] [OR:

Escherichia

coli

]

Contig067G

35948380_f1_106

409

4535

324

107

NO-HIT

Contig067G

36023552_f3_408

410

4536

987

328

1274

7.20E−130

gp:[GI:e1284435:g2995376]

[LN:SPCC320] [AC:AL022245]

[PN:serine/threonine dehydratase]

[GN:SPCC320.14]

[OR:

Schizosaccharomyces pombe

]

[SR:fission yeast] [DE:

S.pombe

chromosome III cosmid c320.),

[NT:SPCC320.14, putative

serine/threonine dehydratase,]

Contig067G

36048842_c3_789

411

4537

1419

472

1484

4.00E−152

pir:[LN:QRECAA]

[AC:H64733:J50447:S10720:5451

91] [PN:aromatic amino acid

transport protein aroP] [GN:aroP]

[CL:arginine permease]

[OR:

Escherichia coli

] [MP:2.6

min]

Contig067G

36070256_f1_119

412

4538

441

146

NO-HIT

Contig067G

36125075_f3_360

413

4539

705

234

183

3.00E−14

pir:[LN:D64946] [AC:D64946]

[PN:probable DNA polymerase III

epsilon chain] [OR:

Escherichia

coli

]

Contig067G

36220040_c2_664

414

4540

852

283

529

6.40E−51

sp:[LN:SURE_HAEIN]

[AC:P45681] [GN:SURE:HI0702]

[OR:

HAEMOPHILUS

INFLUENZAE

] [DE:SURVIVAL

PROTEIN SURE HOMOLOG]

[SP:P45681]

Contig067G

36367202_c3_810

415

4541

735

244

182

3.80E−14

sp:[LN:VP4_BPHK7]

[AC:P49860] [GN:4]

[OR:BACTERIOPHAGE HK97]

[DE:PUTATIVE PROHEAD

PROTEASE (GP4)] [SP:P49860]

Contig067G

36437_f3_464

416

4542

540

179

233

1.50E−19

gp:[GI:d1021388:g2217944]

[LN:D89015] [AC:D89015]

[PN:Lrp-family transcriptional

regulators] [GN:mdeR]

[OR:

Pseudomonas putida

]

[SR:

Pseudomonas putida

(strain:ICR3460) DNA]

[DE:

Pseudomonas putida

genes for

MdeR,MdeA and MdeB,complete

cds.] [NT:an essential positive

regulator allowing the]

Contig067G

36438912_c2_740

417

4543

1398

465

412

1.60E−38

sp:[LN:YGIY_ECOLI]

[AC:P40719] [GN:YGIY]

[OR:

ESCHERICHIA COLI

]

[EC:2.7.3.—] [DE:PROBABLE

SENSOR PROTEIN YGIY,]

[SP:P40719]

Contig067G

36460953_c2_687

418

4544

2892

963

NO-HIT

Contig067G

36564012_c3_814

419

4545

342

113

NO-HIT

Contig067G

3906292_c1_588

420

4546

987

328

735

9.50E−73

sp:[LN:UBIA_ECOLI]

[AC:P26601] [GN:UBIA:CYR]

[OR:

ESCHERICHIA COLI

]

[EC:2.5.1.—]

[DE:POLYPRENYLTRANSFER

ASE)] [SP:P26601]

Contig067G

3906308_c1_537

421

4547

969

322

344

2.60E−31

pir:[LN:S77670]

[AC:S77670:S77669]

[PN:probable transcription

activator ptxR] [GN:ptxR]

[OR:

Pseudomonas aeruginosa

]

Contig067G

3906663_c2_682

422

4548

309

102

NO-HIT

Contig067G

3914017_f1_393

423

4549

573

190

519

7.30E−50

gp:[GI:g2981082] [LN:AF052048]

[AC:AF052048] [PN:GTP-

cyclohydrolase] [GN:gch]

[OR:

Ostertagia ostertagi

]

[DE:

Ostertagia ostertagi

GTP-

cyclohydrolase (gch) mRNA,

complete cds.]

Contig067G

3914681_f3_450

424

4550

2133

710

182

1.20E−09

sp:[LN:YPHS_THIVI]

[AC:P45365] [OR:

THIOCYSTIS

VIOLACEA

]

[DE:HYPOTHETICAL 76.5 KD

PROTEIN IN PHBC 3′REGION

(DRF5)] [SP:P45365]

Contig067G

3923437_f1_54

425

4551

2859

952

788

1.50E−83

pir:[LN:S74707] [AC:S74707]

[PN:nitrogen fixation positive

activator protein:protein

slr1305:protein slr1305] [GN:nifL]

[CL:response regulator homology]

[OR:Synechocystis sp.] [SR:PCC

6803, PCC 6803] [SR:PCC 6803,]

Contig067G

3939050_c3_775

426

4552

1287

428

1704

2.00E−175

sp:[LN:IDH_ECOLI]

[AC:P08200]

[GN:ICD:ICDA:ICDE]

[OR:

ESCHERICHIA COLI

]

[EC:1.1.1.42]

[DE:DECARBOXYLASE) (IDH)

(NADP+−SPECIFIC ICDH) (IDP)]

[SP:P08200]

Contig067G

3945263_c3_811

427

4553

1278

425

428

3.20E−40

sp:[LN:COAT_BPHK7]

[AC:P49861] [GN:5]

[OR:BACTERIOPHAGE HK97]

[DE:MAJOR CAPSID PROTEIN

PRECURSOR (GP5) (HEAD

PROTEIN)] [SP:P49861]

Contig067G

3947703_c2_691

428

4554

303

100

NO-HIT

Contig067G

3956568_f1_125

429

4555

1398

465

1549

5.20E−159

sp:[LN:PUR8_HAEIN]

[AC:P44797] [GN:PURB:H10639]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:4.3.2.2]

[DE:ADENYLOSUCCINATE

LYASE,

(ADENYLOSUCCINASE) (ASL)]

[SP:P44797]

Contig067G

3960892_c3_897

430

4556

1368

455

1575

9.20E−162

sp:[LN:DCTA_SALTY]

[AC:P50334] [GN:DCTA]

[OR:

SALMONELLA

TYPHIMURIUM

] [DE:C4-

DICARBOXYLATE

TRANSPORT PROTEIN]

[SP:P50334]

Contig067G

3964383_f2_249

431

4557

876

291

190

6.90E−14

sp:[LN:VIUB_VIBVU]

[AC:Q56743] [GN:VIUB]

[OR:

VIBRIO VULNIFICUS

]

[DE:VULNIBACTIN

UTILIZATION PROTEIN VIUB]

[SP:Q56743]

Contig067G

3995713_c3_888

432

4558

879

292

471

9.00E−45

sp:[LN:YHI9_YEAST]

[AC:P38765] [GN:YHR029C]

[OR:

SACCHAROMYCES

CEREVISIAE

] [SR:,BAKER'S

YEAST] [DE:HYPOTHETICAL

32.6 KD PROTEIN IN DAP2-

SLT2 INTERGENIC REGION]

[SP:P38765]

Contig067G

4025277_f3_383

433

4559

1059

352

1553

2.00E−159

sp:[LN:TRPD_ACICA]

[AC:P00500] [GN:TRPD]

[OR:

ACINETOBACTER

CALCOACETICUS

]

[EC:2.4.2.18]

[DE:ANTHRANILATE

PHOSPHORIBOSYLTRANSFER

ASE.,] [SP:P00500]

Contig067G

4035087_f2_213

434

4560

1068

355

964

5.10E−97

gp:[GI:g146625] [LN:ECOLIPAB]

[AC:L07636] [PN:LIPA protein]

[GN:lipA] [OR:

Escherichia coli

]

[SR:

Escherichia coli

(sub_strain

W3110, strain K-12) (library:

Kohar] [DE:

E.coli

tipoic acid

biosynthesis lipA, lipB and ORFs

1, 2 and 3genes, complete cds;

dacA gene, 3′ end.]

Contig067G

4068888_c3_821

435

4561

1413

470

164

9.00E−09

sp:[LN:Y886_METJA]

[AC:Q58296] [GN:MJ0886]

[OR:

METHANOCOCCUS

JANNASCHII

] [DE:PUTATIVE

MOLYBDOPTERIN

BIOSYNTHESIS PROTEIN

MJ0886] [SP:Q58296]

Contig067G

4069138_c3_870

436

4562

834

277

369

5.80E−34

gp:[GI:c1310305:g3294250]

[LN:SC7C7] [AC:AL031031]

[PN:putative transcriptional

regulator] [GN:5C7C7.17]

[OR:

Streptomyces coelicolor

]

[DE:

Streptomyces coelicolor

cosmid 7C7.] [NT:SC7C7.17,

possible transcriptional regulatory]

Contig067G

4084511_f3_349

437

4563

1305

434

226

3.10E−18

pir:[LN:B69060] [AC:B69060]

[PN:hypothetical protein

MTH1450] [GN:MTH1450]

[CL:hypothetical protein

MTH1450]

[OR:

Methanobacterium

thermoautotrophicum

]

Contig067G

4103402_c2_744

438

4564

276

91

174

2.70E−13

pir:[LN:A64938] [AC:A64938]

[PN:hypothetical protein b1777]

[OR:

Escherichia coli

]

Contig067G

4105187_c2_726

439

4565

501

166

404

1.10E−37

pir:[LN:S37736] [AC:S37736]

[PN:hypothetical protein]

[OR:

Vibrio cholerae

]

Contig067G

411561_c2_689

440

4566

291

96

NO-HIT

Contig067G

42827_f1_151

441

4567

492

163

101

0.00096

pir:[LN:F64563] [AC:F64563]

[PN:hypothetical protein HP0350]

[OR:

Helicobacter pylori

]

Contig067G

4296918_f2_264

442

4568

651

216

248

3.80E−21

sp:[LN:RPC2_BPP22]

[AC:P03035] [GN:C2]

[OR:BACTERIOPHAGE

P22:BACTERIOPHAGE P21]

[SR:,BACTERIOPHAGE 21]

[DE:REPRESSOR PROTEIN C2]

[SP:P03035]

Contig067G

4312693_f3_384

443

4569

816

271

1200

5.00E−122

sp:[LN:TRPC_ACICA]

[AC:P00911] [GN:TRPC]

[OR:

ACINETOBACTER

CALCOACETICUS

]

[EC:4.1.1.48] [DE:INDOLE-3-

GLYCEROL PHOSPHATE

SYNTHASE, (IGPS)]

[SP:P00911]

Contig067G

4317088_f3_356

444

4570

1230

409

807

2.20E−80

gp:[GI:e256814:g1707644]

[LN:PAMEXEFOP] [AC:X99514]

[GN:mexE] [FN:periplasmic link

protein of multidrug efflux]

[OR:

Pseudomonas aeruginosa

]

[DE:

P.aeruginosa

mexE, mexF &

oprN genes.)

Contig067G

4320443_f1_14

445

4571

876

291

950

1.60E−95

sp:[LN:RP32_PSEAE]

[AC:P42378] [GN:RPOH]

[OR:

PSEUDOMONAS

AERUGINOSA

] [DE:RNA

POLYMERASE SIGMA-32

FACTOR] [SP:P42378]

Contig067G

4353387_c1_595

446

4572

1446

481

1496

2.20E−153

gp:[GI:g1907384] [LN:PFU91523]

[AC:U91523] [PN:soluble pyridine

nucleotide transhydrogenase]

[GN:sth] [FN:transfers reducing

equivalents between NAD and]

[OR:

Pseudomonas fluorescens

]

[DE:

Pseudomonas fluorescens

soluble pyridine

nucleotidetranshydrogenase (sth)

gene, complete cds.]

Contig067G

4410693_f2_208

447

4573

660

219

NO-HIT

Contig067G

4468890_f2_219

448

4574

453

150

NO-HIT

Contig067G

4487838_c3_869

449

4575

885

294

709

5.40E−70

pir:[LN:EFECS]

[AC:A03525:A45269:A32881:S45

235:B6474:S66207]

[PN:translation elongation factor

EF-Ts] [GN:tsf] [CL:translation

elongation factor EF-Ts]

[OR:

Escherichia coli

] [MP:4 min]

Contig067G

4490892_f2_244

450

4576

1320

439

1417

5.10E−145

gp:[GI:g4151935] [LN:AF110737]

[AC:AF110737] [PN:RhsE]

[GN:rhsE] [FN:

siderophore

biosynthesis

] [OR:

Sinorhizobium

meliloti

] [DE:

Rhizobium melitoti

strain 2011 rhizobactin regulon.;

completesequence.] [NT:similar to

AlcA]

Contig067G

4494138_c2_668

451

4577

975

324

808

1.70E−80

gp:[GI:d1017009:g1799824]

[LN:D90870]

[AC:D90870:AB001340]

[GN:yfeH] [OR:

Escherichia coli

]

[SR:

Escherichia coli

(strain:K12)

DNA, clone_lib:Kohara lambda

minise] [DE:

E.coli

genomic DNA,

Kohara clone #417(54.4-54.6

min.).] [NT:similar to [SwissProt

Accession Number P39836];]

Contig067G

4542751_f2_182

452

4578

393

130

NO-HIT

Contig067G

4548830_f1_114

453

4579

1026

341

802

7.50E−80

sp:[LN:YJEK_ECOLI]

[AC:P39280] [GN:YJEK]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 38.7 KD

PROTEIN IN MOPA-EFP

INTERGENIC REGION]

[SP:P39280]

Contig067G

4554712_f1_171

454

4580

1446

481

201

1.80E−17

pir:[LN:E70426] [AC:E70426]

[PN:conserved hypothetical

protein aq_1455] [GN:aq_1455]

[OR:

Aquifex aeolicus

]

Contig067G

4570302_f1_170

455

4581

807

268

NO-HIT

Contig067G

4579013_c2_649

456

4582

891

296

401

2.30E−37

sp:[LN:YNEJ_ECOLI]

[AC:P77309] [GN:YNEJ]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL

TRANSCRIPTIONAL

REGULATOR IN UXAB-MARR

INTERGENIC REGION]

[SP:P77309]

Contig067G

4688202_c2_685

457

4583

360

119

NO-HIT

Contig067G

4695338_f1_51

458

4584

393

130

265

6.00E−23

sp:[LN:DC4C_ACICA]

[AC:P20370] [GN:PCAC]

[OR:

ACINETOBACTER

CALCOACETICUS

]

[EC:4.1.1.44] [DE:4-

CARBOXYMUCONOLACTONE

DECARBOXYLASE, (CMD)]

[SP:P20370]

Contig067G

4695878_c2_751

459

4585

591

196

305

3.50E−27

sp:[LN:YDJA_ECOLI]

[AC:P24250] [GN:YDJA]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 20.1 KD

PROTEIN IN SELD-SPPA

INTERGENIC REGION

(ORF183)] [SP:P24250]

Contig067G

4703193_c1_558

460

4586

372

123

NO-HIT

Contig067G

4703193_c2_638

461

4587

1149

382

858

8.80E−86

gp:[GI:g2979673] [LN:AF019760]

[AC:AF019760] [PN:putative

UDP-N-acetyl-D-glucosamine 2-

epimerase] [GN:sacA]

[FN:

meningococcal

capsule

biosynthesis] [OR:

Neisseria

meningitidis

serogroup A]

[DE:

Neisseria meningitidis

serogroup A putativeUDP-N-acetyl-

D-glucosamine 2-epimerase

(sacA), SacB (sacB), SacC(sacC),

and SacD (sacD) genes, complete

cds.] [NT:NfrC and RffE homolog;

SacA]

Contig067G

4729578_c3_899

462

4588

417

138

NO-HIT

Contig067G

4821015_f2_189

463

4589

249

82

NO-HIT

Contig067G

4822567_c3_836

464

4590

1083

360

1211

3.40E−123

sp:[LN:DCUP_ECOLI]

[AC:P29680:P78135]

[GN:HEME] [OR:

ESCHERICHIA

COLI

] [EC:4.1.1.37]

[DE:UROPORPHYRINOGEN

DECARBOXYLASE, (UPD)]

[SP:P29680:P78135]

Contig067G

4864027_c1_584

465

4591

2790

929

285

8.30E−39

gp:[GI:g2529416] [LN:SSU73935]

[AC:U73935] [PN:unknown]

[OR:Shewanella sp. SCRC-2738]

[DE:Shewanella sp. SCRC-2738

eicosapentaenoic acid (EPA)

synthesis genecluster complete

sequence.] [NT:ORF3]

Contig067G

4876882_c3_759

466

4592

480

159

170

7.10E−13

gp:[GI:e1132704:g2408054]

[LN:SPAC29B12] [AC:Z99164]

[PN:hypothetical protein]

[GN:SPAC29B12.13]

[OR:

Schizosaccharomyces pombe

]

[SR:fission yeast] [DE:

S.pombe

chromosome 1 cosmid c29B1-2.]

[NT:SPAC29B12.13, unknown,

len:13]

Contig067G

4881578_f3_482

467

4593

1296

431

962

8.40E−97

pir:[LN:DEECR]

[AC:A00461:B64855] [PN:NADH

dehydrogenase,] [GN:ndh]

[CL:NADH dehydrogenase]

[OR:

Escherichia coli

]

[EC:1.6.99.3] [MP:22 min]

Contig067G

4902151_c3_834

468

4594

1611

536

474

1.50E−46

gp:[GI:g3128315] [LN:AF010496]

[AC:AF010496] [PN:potential

secretion ATP-binding protein]

[OR:

Rhodobacter capsulatus

]

[DE:

Rhodobacter capsulatus

strain

SB1003, partial genome.]

Contig067G

492175_f2_200

469

4595

357

118

324

3.40E−29

gp:[GI:c1374320:g4210828]

[LN:PAF223604] [AC:AJ223604]

[GN:gacE2] [OR:

Pseudomonas

aeruginosa

] [DE:

Pseudomonas

aeruginosa

integron In 101 DNA]

Contig067G

4944058_c3_791

470

4596

1407

468

533

2.40E−51

pir:[LN:E69419] [AC:E69419]

[PN:phosphate ABC transporter,

permease protein (pstA) homolog]

[OR:

Archaeoglobus fulgidus

]

Contig067G

4961067_f1_163

471

4597

1071

356

461

1.00E−43

pir:[LN:B69978] [AC:B69978]

[PN :2-nitropropane dioxygenase

homolog yrpB] [GN:yrpB]

[OR:

Bacillus subtilis

]

Contig067G

506880_f1_120

472

4598

2655

884

384

7.70E−77

pir:[LN:E71377] [AC:E71377]

[PN:probable ATP-dependent

proteinase LA (lon-1)]

[GN:TP0016] [OR:

Treponema

pallidum

subsp.

pallidum

] [SR:,

syphilis spirochete

]

Contig067G

5085925_c1_575

473

4599

1902

633

NO-HIT

Contig067G

5097213_f2_214

474

4600

1392

463

1224

1.40E−124

sp:[LN:SAHH_YEAST]

[AC:P39954]

[GN:SAHI:YER043C]

[OR:

SACCHAROMYCES

CEREVISIAE

] [SR:.BAKER'S

YEAST] [EC:3.3.1.1]

[DE:HYDROLASE)

(ADOHCYASE)] [SP:P39954]

Contig067G

5132813_c2_739

475

4601

741

246

491

6.80E−47

sp:[LN:YAEB_HAEIN]

[AC:P44740] [GN:HI0510]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

HI0510] [SP:P44740]

Contig067G

5136713_c3_816

476

4602

492

163

NO-HIT

Contig067G

5164718_c2_665

477

4603

840

279

439

2.20E−41

sp:[LN:NLPD_PSEAE]

[AC:P45682]

[OR:

PSEUDOMONAS

AERUGINOSA

]

[DE:LIPOPROTEIN NLPD/LPPB

HOMOLOG PRECURSOR]

[SP:P45682]

Contig067G

525252_c2_717

478

4604

540

179

NO-HIT

Contig067G

5272275_c2_676

479

4605

1029

342

257

1.20E−20

gp:[GI:d1033524:g351021]

[LN:D84370] [AC:D84370]

[PN:SogL protein] [GN:sogL]

[OR:

Salmonella typhimurium

]

[SR:

Salmonella typhimurium

(strain:drd-11) plasmid:IncII

plasmid R6] [DE:

Salmonella

typhimurium

IncII plasmid R64

sogL and sogS genes,complete

cds.]

Contig067G

5275465_c3_818

480

4606

564

187

142

6.50E−10

gp:[GI:e51245:g11143594]

[LN:STPES18G] [AC:X67137]

[PN:gp19 protein] [GN:gene 19]

[OR:

Salmonella typhimurium

]

[DE:

S.typhimurium

-phage ES18

genes 13, 19and 15.]

Contig067G

53517_c2_747

481

4607

1473

490

1024

2.20E−103

sp:[LN:PEPD_ECOLI]

[AC:P15288] [GN:PEPD:PEPH]

[OR:

ESCHERICHIA COLI

]

[EC:3.4.13.3] [DE:(PEPTIDASE

D)] [SP:P15288]

Contig067G

5366053_c2_756

482

4608

981

326

677

1.30E−66

sp:[LN:YIAE_ECOLI]

[AC:P37666] [GN:YIAE]

[OR:

ESCHERICHIA COLI

]

[DE:PROBABLE 2-

HYDROXYACID

DEHYDROGENASE IN BISC-

CSPA INTERGENIC REGION]

[SP:P37666]

Contig067G

54212_c3_908

483

4609

645

214

727

6.70E−72

pir:[LN:QQECR6]

[AC:F65094:D29049] [PN:O-

sialoglycoprotein endopeptidase,]

[GN:ygjD] [CL:O-

sialoglycoprotein endopeptidase]

[OR:

Escherichia coli

]

[EC:3.4.24.57] [MP:67 min]

Contig067G

580066_c2_637

484

4610

219

72

NO-HIT

Contig067G

5865916_f1_136

485

4611

540

179

NO-HIT

Contig067G

6136253_c2_670

486

4612

588

195

614

6.30E−60

pir:[LN:S34443]

[AC:S34443:S56375:A65225]

[PN:translation elongation factor

EF-P] [GN:efp] [CL:translation

elongation factor EF-P]

[OR:

Escherichia coli

]

Contig067G

625426_f3_372

487

4613

2304

767

2428

3.70E−252

pir:[LN:F65021] [AC:F65021]

[PN:hypothetical protein b2463]

[OR:

Escherichia coli

]

Contig067G

626636_f1_55

488

4614

1269

422

1167

1.60E−118

sp:[LN:CCA_ECOLI]

[AC:P06961] [GN:CCA]

[OR:

ESCHERICHIA COLI

]

[EC:2.7.7.25) [DE:(TRNA CCA-

PYROPHOSPHORYLASE) (CCA-

ADDING ENZYME)]

[SP:P0696]

Contig067G

629181_c1_563

489

4615

195

64

NO-HIT

Contig067G

6464175_c3_766

490

4616

1473

490

1351

5.00E−138

gp:[GI:g3170587] [LN:AF058302]

[AC:AF058302]

[PN:glyceraldehyde-3-phosphate

dehydrogenase] [GN:gapx]

[OR:

Streptomyces roseofulvus

]

[DE:

Streptomyces roseofulvus

frenolicin

biosynthetic gene

cluster,complete sequence.]

[NT:GapX; probably not the

G3PDH isoform used in]

Contig067G

6522061_f3_347

491

4617

579

192

NO-HIT

Contig067G

6640937_c2_742

492

4618

921

306

172

9.40E−13

pir:[LN:164101] [AC:16410]

[PN:mutator mutT (AT-GC

transversion) homolog] [CL:mutT

domain homology]

[OR:

Haemophilus influenzae

]

Contig067G

6650332_c3_812

493

4619

369

122

NO-HIT

Contig067G

666443_f2_317

494

4620

216

71

NO-HIT

Contig067G

673387_c2_733

495

4621

219

72

NO-HIT

Contig067G

6892318_f1_77

496

4622

699

232

503

3.60E−48

sp:[LN:YHHW_ECOLI]

[AC:P46852] [GN:YHHW]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 26.3 KD

PROTEIN IN GNTR-GGT

INTERGENIC REGION (F231)]

[SP:P46852]

Contig067G

7035752_f3_362

497

4623

264

87

NO-HIT

Contig067G

7151468_f1_52

498

4624

900

299

563

1.60E−54

pir:[LN:D70424] [AC:D70424]

[PN:5,10-

methylenetetrahydrofolate

reductase] [GN:metF] [CL:5.10-

methylenetetrahydrofolate

reductase (FADH2)] [OR:

Aquifex

acolicus

]

Contig067G

7211077_c1_613

499

4625

777

258

953

7.50E−96

sp:[LN:HISP_ECOLI]

[AC:P07109:P77299] [GN:HISP]

[OR:

ESCHERICHIA COLI

]

[DE:HISTIDINE TRANSPORT

ATP-BINDING PROTEIN HISP]

[SP:P07109:P77299]

Contig067G

788207_c1_612

500

4626

750

258

832

5.00E−83

sp:[LN:HISM_ECOLI]

[AC:P20691:P76936] [GN:HISM]

[OR:

ESCHERICHIA COLI

]

[DE:HISTIDINE TRANSPORT

SYSTEM PERMEASE PROTEIN

HISM] [SP:P20091:P76936]

Contig067G

789825_c2_755

501

4627

1905

634

NO-HIT

Contig067G

798805_f2_209

502

4628

1047

348

515

1.90E−49

sp:[LN:MLTB_ECOLI]

[AC:P41052] [GN:MLTB]

[OR:

ESCHERICHIA COLI

]

[EC:3.2.1.—] [DE:(MUREIN

HYDROLASE B) (35 KD

SOLUBLE LYTIC

TRANSGLYCOSYLASE)

(SLT35)] [SP:P41052]

Contig067G

819025_c2_655

503

4629

750

249

460

1.30E−43

sp:[LN:RLUA_ECOLI]

[AC:P39219] [GN:RLUA]

[OR:

ESCHERICHIA COLI

]

[EC:4.2.1.70]

[DE:(PSEUDOURIDYLATE

SYNTHASE) (URACIL

HYDROLYASE)] [SP:P39219]

Contig067G

87778_c2_737

504

4630

693

230

717

7.70E−71

sp:[LN:HISQ_ECOLI]

[AC:P52094:P77635] [GN:HISQ]

[OR:

ESCHERICHIA COLI

]

[DE:HISTIDINE TRANSPORT

SYSTEM PERMEASE PROTEIN

HISQ] [SP:P52094:P77635]

Contig067G

960843_f1_165

505

4631

1338

445

332

8.50E−47

sp:[LN:YAIW_ECOLI]

[AC:P77562] [GN:YAIW]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 40.4 KD

PROTEIN IN SBMA-DDLA

INTERGENIC REGION]

[SP:P77562]

Contig067G

976577_c1_559

506

4632

468

155

NO-HIT

Contig067G

992252_c3_774

507

4633

1716

571

781

1.30E−77

gp:[GI:g790611] [LN:ASU21853]

[AC:U21853] [PN:unknown]

[OR:Anabaena sp.] [SR:Anabaena

sp] [DE:Anabaena sp.

phycobilisome

core component

(apcF) gene, completecds, and

glutamine synthetase (glnA) gene,

partial cds.] [NT:ORF2]

Contig067G

9930437_c1_589

508

4634

1470

489

NO-HIT

Contig067G

9938130_c2_750

509

4635

1191

396

874

1.80E−87

sp:[LN:RHLB_ECOLI]

[AC:P24229] [GN:RHLB:MMRA]

[OR:

ESCHERICHIA COLI

]

[DE:PUTATIVE ATP-

DEPENDENT RNA HELICASE

RHLB] SPP24229]

Contig067G

99606926_f3_339

510

4636

975

324

399

3.80E−37

sp:[LN:Y0505_SYNY3]

[AC:Q55132] [GN:SLR0050]

[OR:SYNECHOCYSTIS SP]

[SR:PCC 6803,

[DE:HYPOTHETICAL 36.1 KD

PROTEIN] [SP:Q55132]

Contig067G

9969552_f1_145

511

4637

1488

495

236

4.20E−17

sp:[LN:YGIF_ECOLI]

[AC:P30871] [GN:YGIF]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 48.4 KD

PROTEIN IN GLNE-CCA

INTERGENIC REGION

(ORFXE)] [SP:P30871]

Contig076G

1048967_c1_234

512

4638

594

197

556

8.80E−54

sp:[LN:PTH_SALTI]

[AC:Q60001] [GN:PTH]

[OR:

SALMONELLA TYPHI

]

[EC:3.1.1.29] [DE:PEPTIDYL-

TRNA HYDROLASE, (PTH)]

[SP:Q60001]

Contig067G

10568750_c3_494

513

4639

219

72

NO-HIT

Contig067G

1070136_f2_119

514

4640

2157

718

149

2.00E−06

gp:[GI:g3319425]

[LN:CELH02F09

[AC:AF077538] [pn:unknown

[GN:H02F09.3]

[OR:

Caenorhabditis elegans

]

[DE:

Caenorhabditis elegans

cosmid H02F09.]

Contig067G

10742127_f1_67

515

4641

1347

448

NO-HIT

Contig067G

10828561_c1_258

516

4642

183

60

NO-HIT

Contig067G

10970380_f1_56

517

4643

1290

429

864

2.00E−86

sp:[LN:HEMI_SALTY]

[AC:P13581] [GN:HEMA]

[OR:

SALMONELLA

TYPHIMURIUM] [EC:1.2.1.—]

[DE:GLUTAMYL-TRNA

REDUCTASE, (GLUTR)]

[SP:P13581]

Contig076G

10976535_f3_200

518

4644

273

90

144

1.40E−09

gp:[GI:g3282803] [LN:AF044668]

[AC:AF044668] [PN:malonyl CoA

acyl carrier protein transacylase]

[GN:fabD] [OR:

Salmonella

typhimurium

] [DE:

Salmonella

typhimurium

(g30k) gene, partial

cds; and 50S ribosomalprotein L32

(rpmF), PlsX (plsX), 3-oxoacyl-

acyl carrier proteinsynthase III

(fabH), malonyl CoA-acyl carrier

protein transacylase(fabD), and 3-

oxoaecyl-acyl carrier protein

reductase (fabG) genes,complete

cds.] [NT:similar to

Escherichia

coli

fabD]

Contig076G

11211067_f1_174

519

4645

579

192

441

1.40E−41

sp:[LN:NUOJ_ECOLI]

[AC:P33605:P78236] [GN:NUOJ]

[OR:

ESCHERICHIA COLI

]

[EC:1.6.5.3]

[DE:OXIDOREDUCTASE

CHAIN 10) (NUO10)]

[SP:P33605:P78236]

Contig076G

1174056_f3_210

520

4646

327

108

296

3.10E−26

pir:[LN:FEKRV]

[AC:S72167:S78121:A00210]

[PN:ferredoxin 2[4Fe-4S]]

[CL:ferredoxin 2[4Fe-

4S]:ferredoxin 2[4Fe-4S]

homology] [OR:

Chromatium

vinosum

]

Contig076G

11895780_c2_335

521

4647

1026

341

1159

1.10E−117

gp:[GI:g147379] [LN:ECOPRS]

[AC:M13174] [GN:prs]

[OR:

Escherichia coli

] [SR:

E.coli

DNA, clone pHO5] [DE:

E.coli

prs

gene encoding

phosphoribosylpyrophosphate

synthetase,complete cds.]

[NT:phosphoribosylpyrophosphate

synthetase (gtg start]

Contig076G

12212752_f2_118

522

4648

1380

414

NO-HIT

Contig076G

12369200_f1_69

523

4649

1248

415

1613

8.60E−166

pir:[LN:F64078] [AC:F64078]

[PN:translation elongation factor

EF-G] [CL:translation elongation

factor G:translation elongation

factor Tu homology]

[OR:

Haemophilus influenzae

]

Contig076G

1285056_f1_36

524

4650

2460

819

106

9.60E−10

pir:[LN:B70520]

[AC:B70520:S60770]

[PN:probable PPE

protein:hypothetical protein 5′]

[GN:PPE] [OR:

Mycobacterium

tuberculosis

]

Contig076G

13082313_f2_101

525

4651

1800

599

2191

4.90E−227

pir:[LN:D65000]

[AC:D65000:538313:S38312:S65

634:565635:S37060:S37061]

[PN:NADH dehydrogenase

(ubiquinone), I, chain C-D]

[GN:nuoC:nuoD] [OR:

Escherichia

coli

] [EC:1.6.5.3] [MP:49.5 min]

Contig076G

1364392_c2_334

526

4652

297

98

NO-HIT

Contig076G

13960062_f2_99

527

4653

654

217

357

1.10E−32

gp:[GI:g3273735] [LN:AF057063]

[AC:AF057063] [PN:NADH

dehydrogenase chain A]

[GN:nuoA] [OR:

Erwinia

carotovora

subsp.

carotovora

]

[DE:

Erwinia carotovora

subsp.

carotovora

aspartate

aminotransferaset) gene, partial

cds; HexA (hexA), NADH

dehydrogenase chain A(nuoA),

and NADH dehydrogenase chain B

(nuoB) genes, complete cds;and

NADH dehydrogenase chain C

(nuoC) gene, partial cds.]

[NT:NuoA]

Contig076G

14323511_f1_27

528

4654

795

264

462

8.10E−44

sp:[LN:FENR_ECOLI]

[AC:P28861:P11007]

[GN:FPR:MVRA]

[OR:

ESCHERICHIA COLI

]

[EC:1.18.1.2] [DE:(FLXR)

(METHYL VIOLOGEN

RESISTANCE PROTEIN A)

(DAI)] [SP:P28861:P11007]

Contig076G

14572160_c2_391

529

4655

255

84

NO-HIT

Contig076G

14720811_f1_17

530

4656

2715

904

2777

3.90E−289

pir:[LN:A65000]

[AC:A65000:S65638:S38316:S37

064] [PN:NADH dehydrogenase, I

chain G] [GN:nuoG]

[OR:

Escherichia coli

]

[EC:1.6.99.3]

Contig076G

14964087_c2_337

531

4657

762

253

660

8.40E−65

sp:[LN:RIBB_ECOLI]

[AC:P24199] [GN:RIBB:HTRP]

[OR:

ESCHERICHIA COLI

]

[DE:3,4-DIHYDROXY-2-

BUTANONE 4-PHOSPHATE

SYNTHASE (DHBP

SYNTHASE)] [SP:P24199]

Contig076G

15626708_f1_37

532

4658

1422

473

1537

9.80E−158

sp:[LN:SR54_HAEIN]

[AC:P44518] [GN:FFH:H10106]

[OR:

HAEMOPHILUS

INFLUENZAE

] [DE:SIGNAL

RECOGNITION PARTICLE

PROTEIN (FIFTY-FOUR

HOMOLOG)] [SP:P44518]

Contig076G

15663383_f2_138

533

4659

1095

364

847

1.30E−84

sp:[LN:RLUD_ECOLI]

[AC:P33643:P77003]

[GN:RLUD:SFHB]

[OR:

ESCHERICHIA COLI

]

[EC:4.2.1.70]

[DE:(PSEUDOURIDYLATE

SYNTHASE) (URACIL

HYDROLYASE)]

[SP:P33643:P77003]

Contig076G

15808137_f1_35

534

4660

927

308

162

2.20E−19

sp:[LN:PFS_BACSU]

[AC:032028] [GN:PFS]

[OR:

BACILLUS SUBTILIS

]

[EC:3.2.2.16:3.2.2.9]

[DE:NUCLEOSIDASE;

(MTA/SAH NUCLEOSIDASE)

(P46)] [SP:032028]

Contig076G

181386_c3_427

535

4661

1107

368

493

4.20E−47

sp:[LN:YPIY_PSEAE]

[AC:P33641]

[OR:

PSEUDOMONAS

AERUGINOSA

]

[DE:HYPOTHETICAL 38.5 KD

PROTEIN IN PILS 5′REGION

(ORGY] [SP:P33641]

Contig076G

19647000_c1_300

536

4662

192

63

NO-HIT

Contig076G

19718768_f3_158

537

4663

1380

459

557

6.90E−54

pir:[LN:G71097] [AC:G71097]

[PN:probable amidohydrolase]

[GN:PH1043] [OR:

Pyrococcus

horikoshii

]

Contig076G

19727128_f2_83

538

4664

357

118

94

0.00089

pir:[LN:C70420] [AC:C70420]

[PN:NADH dehydrogenase I chain

M] [GN:nuoM2] [CL:NADH

dehydrogenase (ubiquinone) chain

4] [OR:

Aquifex aeolicus

]

Contig076G

20012_f3_187

539

4665

594

197

717

7.70E−71

pir:[LN:B71565] [AC:B71565]

[PN:probable dctp deaminase]

[GN:ded] [CL:dCTP deaminase]

[OR:

Chlamydia trachomatis

]

Contig076G

20040966_f2_80

540

4666

1059

352

NO-HIT

Contig076G

20115762_f2_117

541

4667

216

71

NO-HIT

Contig076G

20198811_c3_492

542

4668

2853

950

2442

1.20E−253

pir:[LN:D71466] [AC:D71466]

[PN:probable ribonucleoside

reductase, large chain] [GN:nrdA]

[OR:

Chlamydia trachomatis

]

Contig076G

20312562_f2_128

543

4669

300

99

251

1.80E−21

gp:[GI:g1173842]

[LN:VHU39441] [AC:U39441]

[PN:acyl carrier protein]

[GN:acpP] [OR:

Vibrio harveyi

]

[DE:

Vibrio harveyi

malonyl-

CoA:ACP transacylase (fabD)

gene, partialcds, and 3-ketoacyl-

ACP reductase (fabG), acyl carrier

protein(acpP), 3-ketoacyl-ACP

synthase II (fabF) and

aminodeoxychorismatelyase

(pabC) genes, complete cds.]

Contig076G

20318780_c3_430

544

4670

852

283

581

2.00E−56

sp:[LN:YCHB_HAEIN]

[AC:P45271) [GN:H11608]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

HI1608] [SP:P45271]

Contig076G

210932_c2_398

545

4671

1080

359

389

4.40E−36

gp:[GI:d1037181:g4062962]

[LN:AB014757] [AC:AB014757]

[PN:PhbR] [GN:phbR]

[OR:Pseudomonas sp. 61-3]

[SR:Pseudomonas sp. 61-3

(strain:61-3) DNA]

[DE:Pseudomonas sp. 61-3 genes

for PhbR. acetoacetyl-CoA

reductase,beta-ketothiolase and

PHB synthase, complete cds.]

Contig076G

2125138_c3_434

546

4672

417

138

364

2.00E−33

sp:[LN:PAND_ECOLI]

[AC:P31664] [GN:PAND)

[OR:

ESCHERICHIA COLI

]

[EC:4.1.1.11]

[DE:DECARBOXYLASE)]

[SP:P31664]

Contig076G

2150250_f2_123

547

4673

699

232

146

1.10E−08

sp:[LN:GNTR_BACLI]

[AC:P46833] [GN:GNTR]

[OR:

BACILLUS

LICHENIFORMIS

]

[DE:GLUCONATE OPERON

TRANSCRIPTIONAL

REPRESSOR (P28 PROTEIN)]

[SP:P46833]

Contig076G

21681525_f1_18

548

4674

1020

339

1140

1.10E−115

sp:[LN:NUOH_ECOLI]

[AC:P33603:P78307]

[GN:NUOH] [OR:

ESCHERICHIA

COLI

] [EC:1.6.5.3]

[DE:OXIDOREDUCTASE

CHAIN 8) (NUO8))

[SP:P33603:P78307]

Contig076G

21743812_c2_333

549

4675

1722

573

380

4.00E−33

sp:[LN:YHE3_PSEAE]

[AC:P42810]

[OR:

PSEUDOMONAS

AERUGINOSA

]

[DE:HYPOTHETICAL 64.8 KD

PROTEIN IN HEMM-HEMA

INTERGENIC REGION (ORF3)]

[SP:P42810]

Contig076G

21761375_f1_43

550

4676

1053

350

138

5.00E−09

sp:[LN:ZIPA_ECOLI]

[AC:P77173] [GN:ZIPA]

[OR:

ESCHERICHIA COLI

]

[DE:CELL DIVISION PROTEIN

ZIPA] [SP:P77173]

Contig076G

21907812_f3_157

551

4677

1407

468

342

4.60E−46

gp:[GI:g598251]

[LN:MBOOMPE] [AC:L31788]

[PN:outer membrane protein E]

[OR:

Moraxella catarrhalis

]

[SR:

Moraxella catarrhalis

(strain

25240) DNA] [DE:

Moraxella

catarrhalis

outer membrane protein

E gene., complete cds.]

Contig076G

21992203_f2_126

552

4678

876

291

670

7.30E−66

gp:[GI:g2738154]

[LN:PAU91631] [AC:U91631]

[PN:malonyl-CoA:acyl carrier

protein transacylase] [GN:fabD]

[OR:

Pseudomonas aeruginosa

]

[DE:

Pseudomonas aeruginosa

PlsX

protein homolog (plsX) gene,

partialcds; and malonyl-CoA:acyl

carrier protein transacylase

(fabD),3-oxoacyl-acyl carrier

protein reductase (fabG), acyl

carrierprotein (acpP), and 3-

oxoacyl-acyl carrier protein

synthase II(fabF) genes, complete

cds.]

Contig076G

2214075_c2_388

553

4679

240

79

NO-HIT

Contig076G

22158452_f1_47

554

4680

657

218

479

1.30E−45

sp:[LN:BID2_HAEIN]

[AC:P45248] [GN:BIOD-

B:H11550] [OR:

HAEMOPHILUS

INFLUENZAE

] [EC:6.3.3.3]

[DE:2) (DTB SYNTHETASE 2)

(DTBS 2)] [SP:P45248]

Contig076G

22285625_c3_429

555

4681

612

203

259

2.60E−22

sp:[LN:LOLB_PSEAE]

[AC:P42812] [GN:LOLB:HEMM]

[OR:

PSEUDOMONAS

AERUGINOSA

] [DE:OUTER

MEMBRANE LIPOPROTEIN

LOLB PRECURSOR]

[SP:P42812]

Contig076G

2244062_f3_202

556

4682

477

158

323

4.30E−29

pir:[LN:B65046] [AC:B65046]

[PN:hypothetical protein b2665]

[OR:Escherichia coli]

Contig076G

22681512_c3_439

557

4683

621

206

597

4.00E−58

sp:[LN:YCIO_ECOLI]

[AC:P45847] [GN:YCIO]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 23.2 KD

PROTEIN IN TRPL-BTUR

INTERGENIC REGION]

[SP:P45847]

Contig076G

234627_f1_11

558

4684

855

284

NO-HIT

Contig076G

23525341_f2_140

559

4685

495

164

504

2.90E−48

sp:[LN:KDTB_ECOLI]

[AC:P23875] [GN:KDTB]

[OR:

ESCHERICHIA COLI

]

[DE:LIPOPOLYSACCHARIDE

CORE BIOSYNTHESIS

PROTEIN KDTB] [SP:P23875]

Contig076G

23562717_f2_72

560

4686

1272

423

1169

9.70E−119

pir:[LN:G70796] [AC:G70796]

[PN:hypothetical protein Rv3726]

[GN:Rv3726] [OR:

Mycobacterium

tuberculosis

]

Contig076G

23597507_f2_97

561

4687

1671

556

461

1.00E−43

sp:[LN:RSTB_ECOLI]

[AC:P18392] [GN:RSTB:USPT]

[OR:

ESCHERICHIA COLI

]

[EC:2.7.3.—] [DE:SENSOR

PROTEIN RSTB,] [SP:P18392]

Contig076G

23605200_f1_7

562

4688

1134

377

NO-HIT

Contig076G

23633590_f2_108

563

4689

1611

536

1624

5.90E−167

sp:[LN:NUOM_ECOLI]

[AC:P31978:P78248]

[GN:NUOM]

[OR:

ESCHERICHIA COLI

]

[EC:1.6.5.3]

[DE:OXIDOREDUCTASE

CHAIN 13) (NUO13)]

[SP:P31978:P78248]

Contig076G

23679013_f3_168

564

4690

750

249

504

2.90E−48

sp:[LN:RSTA_ECOLI]

[AC:P52108] [GN:RSTA:URPT]

[OR:

ESCHERICHIA COLI

]

[DE:TRANSCRIPTIONAL

REGULATORY PROTEIN

RSTA] [SP:P52108]

Contig076G

23729838_f2_120

565

4691

741

246

NO-HIT

Contig076G

23868802_c2_344

566

4692

882

293

354

2.20E−32

sp:[LN:OTSB_ECOLI]

[AC:P31678] [GN:OTSB]

[OR:

ESCHERICHIA COLI

]

[EC:3.1.3.12]

[DE:PHOSPHATASE) (TPP)]

[SP:P31678]

Contig076G

23989687_c3_472

567

4693

924

307

262

1.30E−22

sp:[LN:IAID_PYRHO]

[AC:057809] [GN:PHBE027]

[OR:

PYROCOCCUS

HORIKOSHII

] [EC:4.1.99.4]

[DE:(ACC DEAMINASE)]

[SP:057809]

Contig076G

24017068_f1_30

568

4694

1689

562

617

3.00E−69

sp:[LN:YGXB_BACSU]

[AC:P37874] [GN:YGXB]

[OR:BACILLUS SUBTILIS]

[DE:HYPOTHETICAL 60.0 KD

PROTEIN IN GLPD-SPOVR

INTERGENIC REGION (ORF1)]

[SP:P37874]

Contig076G

24218793_c3_474

569

4695

900

299

565

9.80E−55

sp:[LN:YEIE_ECOLI]

[AC:P32484] [GN:YEIE]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL

TRANSCRIPTIONAL

REGULATOR IN LYSP-NFO

INTERGENIC REGION]

[SP:P32484]

Contig076G

24251077_f1_50

570

4696

675

224

193

8.40E−21

sp:[LN:GPH_ECOLI]

[AC:P32662] [GN:GPH]

[OR:

ESCHERICHIA COLI

]

[EC:3.1.3.18]

[DE:PHOSPHOGLYCOLATE

PHOSPHATASE, (PGP)]

[SP:P32662]

Contig076G

24252125_c1_269

571

4697

195

64

NO-HIT

Contig076G

24276952_c3_445

572

4698

246

81

NO-HIT

Contig076G

24305317_f1_2

573

4699

1248

415

1316

2.60E−134

sp:[LN:GCDH_HUMAN]

[AC:Q92947:014719]

[GN:GCDH] [OR:HOMO

SAPIENS] [EC:1.3.99.7]

[DE:GLUTARYL-COA

DEHYDROGENASE

PRECURSOR. (GCD)]

[SP:Q92947:014719]

Contig076G

24408465_f1_64

574

4700

1128

375

1515

2.10E−155

sp:[LN:YEAW_ECOLI]

[AC:P76253] [GN:YEAW]

[OR:

ESCHERICHIA COLI

]

[EC:1.14.1.—] [DE:PUTATIVE

DIOXYGENASE ALPHA

SUBUNIT YEAW,] [SP:P76253]

Contig076G

24414000_c1_243

575

4701

195

64

NO-HIT

Contig076G

24511587_f1_29

576

4702

243

80

NO-HIT

Contig076G

245912_f3_203

577

4703

1794

597

144

1.20E−06

pir:[LN:B26696] [AC:B26696]

[PN:hypothetical protein 1 (CYb-

COII intergenic region)]

[CL:hypothetical protein 1 (CYb-

COII intergenic region)]

[OR:

mitochondrion Leishmania

tarentolae]

Contig076G

24644062_f1_23

578

4704

300

99

135

3.60E−09

gp:[GI:e350466:g2440094]

[LN:MLCB57] [AC:Z99494]

[PN:small cold-shock protein]

[GN:cspA] [OR:

Mycobacterium

leprae

] [DE:

Mycobacterium leprae

cosmid B57.] [NT:MLCB57.11,

cspA, small cold-shock protein,

len:].

Contig076G

24644668_c1_306

579

4705

801

266

164

1.50E−10

pir:[LN:A70040] [AC:A70040]

[PN:molybdate-binding protein

homolog yvgL] [GN:yvgL]

[CL:molybdate-binding

periplasmic protein] [OR:

Bacillus

subtilis

]

Contig076G

24645417_f1_188

580

4706

960

319

NO-HIT

Contig076G

24652278_f2_100

581

4707

684

227

877

8.50E−88

sp:[LN:NUOB_ECOLI]

[AC:P33598:P78090] [GN:NUOB]

[OR:

ESCHERICHIA COLI

]

[EC:1.6.5.3]

[DE:OXIDOREDUCTASE

CHAIN 2) (NUO2)]

[SP:P33598:P78090]

Contig076G

24744002_c3_424

582

4708

480

159

478

1.60E−45

sp:[LN:SMPB_ECOLI]

[AC:P32052:P77011] [GN:SMPB]

[OR:

ESCHERICHIA COLI

]

[DE:SMALL PROTEIN B (18.3

KD PROTEIN)]

[SP:P32052:P77011]

Contig076G

24819067_c1_316

583

4709

435

144

290

2.70E−25

pir:[LN:G64534] [AC:G64534]

[PN:hypothetical protein HP0119]

[OR:

Helicobacter pyloril

Contig076G

24819067_c2_407

584

4710

447

149

289

3.60E−25

pir:[LN:G64534] [AC:G64534]

[PN:hypothetical protein HP0119]

[OR:

Helicobacter pylori

]

Contig076G

24819692_c3_515

585

4711

432

143

281

2.90E−24

pir:[LN:G64534] [AC:G64534]

[PN:hypothetical protein HP0119]

[OR:

Helicobacter pylori

]

Contig076G

24824063_c1_307

586

4712

1422

473

442

3.10E−57

gp:[GI:g3128345] [LN:AF010496]

[AC:AF010496] [PN:hypothetical

protein] [OR:

Rhodobacter

capsulatus

] [DE:

Rhodobacter

capsulatus

strain SB1003, partial

genome.]

Contig076G

24900375_f3_161

587

4713

3258

1085

NO-HIT

Contig076G

250136_c1_298

588

4714

1338

445

1071

2.40E−108

gp:[GI:g4377313] [LN:AE001679]

[AC:AE001679:AE001363]

[PN:Ribonucleoside Reductase,

Small Chain] [GN:nrdB]

[OR:

Chlamydia pneumoniae

]

[DE:

Chlamydia pneumoniae

section 95 of 103 of the complete

genome.]

Contig0766

2525308_c1_241

589

4715

666

221

366

1.20E−33

sp:[LN:YF63_HAEIN]

[AC:P44255] [GN:H11563]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

H11563] [SP:P44255]

Contig076G

25402187_c3_459

590

4716

822

273

310

1.00E−27

pir:[LN:F65039] [AC:F65039]

[PN:hypothetical protein b2611]

[OR:

Escherichia coli

]

Contig076G

25438902_f2_122

591

4717

840

279

431

1.60E−40

sp:[LN:Y902_HAEIN]

[AC:P44070] [GN:H10902]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

H10902] [SP:P44070]

Contig076G

25484535_f3_159

592

4718

564

187

403

1.40E−37

gp:[GI:d1036760:g4062561]

[LN:D90737]

[AC:D90737:AB001340] [PN:4-

hydroxyphenylacetate 3-

monooxygenase (EC] [GN:nmoB]

[OR:

Escherichia coli

].

[SR:

Escherichia coli

(strain:K12)

DNA, clone:Kohara clone #227]

[DE:

Escherichia coli

genomic

DNA. (22.8-23.1 min).]

(NT:ORF_ID:o228#5; similar to

PIR Accession Number]

Contig076G

25672167_f1_46

593

4719

768

255

421

1.80E−39

sp:[LN:BIOC_HAEIN]

[AC:P45249] [GN:BIOC:HI1551]

[OR:

HAEMOPHILUS

INFLUENZAE

] [DE:PUTATIVE

BIOTIN SYNTHESIS PROTEIN

BIOC] [SP:P45249]

Contig076G

25900342_f1_45

594

4720

1284

427

1412

1.70E−144

sp:[LN:BIOA_HAEIN]

[AC:P44426] [GN:BIOA:HI1554]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:2.6.1.62]

[DE:AMINOTRANSFERASE)]

[SP:P44426]

Contig076G

26258430_c1_246

595

4721

1455

484

889

4.50E−89

pir:[LN:183402]

[AC:183402:H64952:S33584]

[PN:alpha,alpha-trehalose-

phosphate synthase (UDP-

forming).] [GN:otsA]

[OR:

Escherichia coli

]

[EC:2.4.1.15]

Contig076G

26259635_c3_471

596

4722

1161

386

415

7.70E−39

sp:[LN:EMRA_HAEIN]

[AC:P44928]

[GN:EMRA:HI0898]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:MULTIDRUG RESISTANCE

PROTEIN A HOMOLOG]

[SP:P44928]

Contig076G

26288430_c3_422

597

4723

1017

338

738

4.60E−73

pir:[LN:G64940] [AC:G64940]

[PN:hypothetical protein b1799]

[CL:conserved hypothetical

protein HI13641 [OR:

Escherichia

coli

]

Contig076G

26455056_f1_22

598

4724

1518

505

1084

9.90E−110

sp:[LN:NUON_ECOLI]

[AC:P33608:P78281]

[GN:NUON] [OR:

ESCHERICHIA

COLI

] [EC:1.6.5.3]

[DE:OXIDOREDUCTASE

CHAIN 14)(NUO14)]

[SP:P33608:P7828 I]

Contig076G

26757877_c2_338

599

4725

786

261

354

2.20E−32

pir:[LN:E71057] [AC:E71057]

[PN:probable thiamine

biosynthesis protein]

[GN:PH1155] [OR:

Pyrococcus

horikoshii

]

Contig076G

26797151_f3_151

600

4726

1350

449

1443

8.90E−148

gp:[GI:g1842056]

[LN:ACU87258] [AC:U87258]

[PN:cis,cis-muconate transport

protein MucK] [GN:mucK]

[OR:

Acinetobacter sp.

ADPI]

[DE:

Acinetobacter sp.

ADPI

cis,cis-muconate transport protein

MucK(mucK) and electron transfer

flavoprotein-ubiquinone

oxidoreductasehomolog genes,

complete cds.]

Contig076G

26833413_f1_19

601

4727

561

186

773

8.90E−77

sp:[LN:NUO1_ECOLI]

[AC:P33604:P76488:P78183]

[GN:NUO1] [OR:

ESCHERICHIA

COLI

] [EC:1.6.5.3]

[DE:OXIDOREDUCTASE

CHAIN 9) (NUO9)]

[SP:P33604:P76488:P78183]

Contig076G

273452_c2_325

602

4728

1626

541

718

6.00E−116

pir:[LN:H70382] [AC:H70382]

[PN:NH(3)-dependent NAD+

synthetase] [GN:nadE]

[OR:Aquifex aeolicus]

Contig076G

292168_f3_195

603

4729

1263

420

437

3.60E−41

sp:[LN:Y4WD_RHISN]

[AC:P55682] [GN:Y4WD]

[OR:RHIZOBIUM SP]

[DE:HYPOTHETICAL

TRANSPORT PROTEIN Y4WD]

[SP:P55682]

Contig076G

29298791_c3_460

604

4730

978

325

735

9.50E−73

sp:[LN:YOHI_HAEIN]

[AC:P44606] [GN:H10270]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

H10270] [SP:P44606]

Contig076G

29495466_f3_217

605

4731

390

129

563

1.60E−54

pir:[LN:R3EC12]

[AC:S13738:A02727:JH0808:A65

128] [PN:ribosomal protein S12]

[GN:rpsL:strA] [CL:

Escherichia

coli

ribosomal protein S12]

[OR:

Escherichia coli

] [MP:73

min]

Contig076G

29582075_c3_504

606

4732

192

63

NO-HIT

Contig076G

30267026_c3_456

607

4733

789

262

216

9.40E−18

sp:[LN:BIRA_BACSU]

[AC:P42975] [GN:BIRA]

[OR:

BACILLUS SUBTILIS

]

[EC:6.3.4.15] [DE:COA-

CARBOXYLASE]

SYNTHETASE), (BIOTIN--

PROTEIN LIGASE)] [SP:P42975]

Contig076G

30273568_c3_488

608

4734

366

121

NO-HIT

Contig076G

30289677_f1_53

609

4735

297

98

97

3.80E−05

pir:[LN:F64801] [AC:F64801]

[PN:hypothetical protein b0667]

[OR:

Escherichia coli

]

Contig076G

30335925_f2_125

610

4736

1185

394

1066

8.00E−108

sp:[LN:BIOF_HAEIN]

[AC:P44422] [GN:BIOF:H11553]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:2.3.1.47]

[DE:LIGASE)] [SP:P44422]

Contig076G

30596937_c3_440

611

4737

816

271

252

1.40E−21

sp:[LN:YPUG_BACSU]

[AC:P35154] [GN:YPUG]

[OR:

BACILLUS SUBTILIS

]

[DE:HYPOTHETICAL 29.6 KD

PROTEIN IN RIBT-DACB

INTERGENIC REGION

(ORFX7)] [SP:P35154]

Contig076G

31366508_c3_493

612

4738

360

119

NO-HIT

Contig076G

31510793_f3_218

613

4739

546

181

570

2.90E−55

pir:[LN:G64078] [AC:G64078]

[PN:ribosomal protein S7]

[CL:

Escherichia coli

ribosomal

protein S7] [OR:

Haemophilus

influenzae]

Contig076G

31656562_c2_346

614

4740

192

63

NO-HIT

Contig076G

32033402_c3_506

615

4741

1377

458

1424

9.20E−146

pir:[LN:ZTEC3] [AC:A23103]

[PN:citrate utilization determinant]

[GN:cit] [CL:citrate utilization

determinant] [OR:

Escherichia coli

]

Contig076G

32113817_f2_102

616

4742

1389

462

1464

5.30E−150

sp:[LN:NUOF_ECOLI]

[AC:P31979:P78239] [GN:NUOF]

[OR:

ESCHERICHIA COLI

]

[EC:1.6.5.3]

[DE:OXIDOREDUCTASE

CHAIN 6) (NUO6)]

[SP:P31979:P78239]

Contig076G

3235158_c1_262

617

4743

588

195

NO-HIT

Contig076G

32453418_f3_193

618

4744

3456

1151

587

1.10E−93

gp:[GI:e1359196:g4007736]

[LN:SC7A1] [AC:AL034447]

[PN:putative chromosome

associated protein]

[GN:SC7A1.21]

[OR:

Streptomyces coelicolor

]

[DE:

Streptomyces coelicolor

cosmid 7A1.] [NT:SC7A1.21,

possible chromosome associated

protein,]

Contig076G

3301562_f1_63

619

4745

999

332

406

6.90E−38

gp:[GI:g2853612] [LN:AF034088]

[AC:AF034088] [PN:lipase]

[GN:lipP] [OR:Pseudomonas sp.

B11-1] [DE:Pseudomonas sp. B11-

1 lipase (lipP) gene, complete cds.]

Contig076G

33316292_c2_341

620

4746

627

208

224

1.30E−18

sp:[LN:YPUH_BACSU]

[AC:P35155] [GN:YPUH]

[OR:

BACILLUS SUBTILIS

]

[DE:HYPOTHETICAL 22.0 KD

PROTEIN IN RIBT-DACB

INTERGENIC REGION

(ORFX8)] [SP:P35155]

Contig076G

33366555_f1_8

621

4747

1065

354

263

1.90E−37

pir:[LN:547051] [AC:S47051]

[PN:hypothetical protein 1]

[OR:Xanthobacter sp.]

Contig076G

33555_c3_457

622

4748

750

249

186

2.70E−18

gp:[GI:g4155360] [LN:AE001509]

[AC:AE001509:AE001439]

[PN:putative] [GN:jhp0796]

[OR:

Helicobacter pylori

J99]

[DE:

Helicobacter pylori

, strain J99

section 70 of 132 of the

completegenome.] [NT:similar to

H. pylori

26695 gene HP0862]

Contig076G

3359783_f2_148

623

4749

834

277

855

1.80E−85

sp:[LN:EFG_THICU]

[AC:O50565] [GN:FUS]

[OR:

THIOBACILLUS

CUPRINUS

] [DE:ELONGATION

FACTOR G (EF-G)] [SP:050565]

Contig076G

33620205_f2_124

624

4750

2088

695

1725

1.20E−177

gp:[GI:g146615] [LN:ECOLIGA]

[AC:M30255] [OR:

Escherichia

coli

] [SR:

E.coli

(strain K12) DNA,

clone pLG2520] [DE:

E.coli

lig

gene encoding DNA ligase,

complete cds.] [NT:lig peptide]

Contig076G

33784817_c1_315

625

4751

1239

412

1285

4.90E−131

5p:[LN:ADD_ECOLI]

[AC:P22333:P78240:P78163]

[GN:ADD] [OR:

ESCHERICHIA

COLI

] [EC:3.5.44]

[DE:ADENOSINE DEAMINASE,

(ADENOSINE

AMINOHYDROLASE)]

[SP:P22333:P78240:P78163]

Contig076G

33839657_f2_105

626

4752

336

111

338

1.10E−30

gp:[GI:d10.16835:g1799639]

[LN:D90859]

[AC:D90859:AB001340]

[PN:NADH DEHYDROGENASE]

CHAIN K (EC 1.6.5.3)]

[GN:nuoK] [OR:

Escherichia coli

]

[SR:

Escherichia coli

(strain:K12)

DNA, clone_lib:Kohara lambda

minise] [DE:

E.coli

genomic DNA,

Kohara clone #403(51.5-51.9

min.).] [NT:similar to [SwissProt

Accession Number P33606);]

[RE:

Contig076G

34022133_c2_374

627

4753

462

153

NO-HIT

Contig076G

34023312_f3_182

628

4754

195

64

NO-HIT

Contig076G

34087888_f1_10

629

4755

672

223

130

6.70E−07

gp:[GI:g3123885] [LN:AF027206]

[AC:AF027206] [PN:putative

DNA-binding protein Bm1P1]

[GN:bmtPt] [OR:

Bacillus

megaterium] [DE:

Bacillus

megaterium putative DNA-binding

protein Bm1P1 gene, complete

cds.] [NT:TetR/AcrR transcription

regulator family]

Contig076G

34116642_c2_376

630

4756

189

62

NO-HIT

Contig076G

34181542_c2_323

631

4757

864

287

393

1.70E−36

gp:[GI:e274873:g1907076]

[LN:HSPIRIN1] [AC:Y07867]

[PN:pirin] [OR:Homo sapiens]

[DE:

H. sapiens

mRNA for Pirin,

isolate 1.]

Contig076G

34412505_c2_336

632

4758

318

105

220

3.50E−18

sp:[LN:RL25_HAEIN]

[AC:P45281]

[GN:RPLY:RPL25:H11630]

[OR:

HAEMOPHILUS

INFLUENZAE

] [DE:50S

RIBOSOMAL PROTEIN L25]

[SP:P45281]

Contig076G

34416550_t2_115

633

4759

522

173

165

1.80E−11

gp:[GI:c1354516:g3924824]

[LN:CEK08H10] [AC:Z83113]

[GN:K08H10.2a]

[OR:

Caenorhabditis clegans

]

[DE:

Caenorhabditis clegans

cosmid K08H10, complete

sequence.] [NT:cDNA EST

yk370a12.5 comes from this gene;

cDNA EST]

Contig076G

35156630_f3_185

634

4760

1251

416

773

8.90E−77

sp:[LN:YCAB_PSEFR]

[AC:P72190]

[OR:

PSEUDOMONAS FRAGI]

[DE:HYPOTHETICAL 30.2 KD

PROTEIN IN CAPB 3′REGION]

[SP:P72190]

Contig076G

35351463_f2_127

635

4761

789

262

705

1.40E−69

sp:[LN:FABG_PSEAE]

[AC:054438] [GN:FABG]

[OR:

PSEUDOMONAS

AERUGINOSA

] [EC:1.1.1.100]

[DE:ACYL CARRIER PROTEIN

REDUCTASE)] [SP:054438]

Contig076G

35989530_c3_413

636

4762

471

156

299

1.50E−26

gp:[GI:g4155986] [LN:AE001560]

[AC:AE001560:AE001439]

[PN:putative] [GN:jhp1377]

[OR:

Helicobacter pylori

J99]

[DE:

Helicobacter pylori

, strain J99

section 121 of 132 of the

completegenome.] [NT:similar to

H. pylori

26695 gene HP1484]

Contig076G

36517312_f1_3

637

4763

1248

415

915

8.00E−92

gp:[GI:g3378447] [LN:AF079317]

[AC:AF079317] [PN:unknown]

[GN:orf1338] [OR:

Sphingomonas

aromaticivorans]

[DE:

Sphingomonas

aromaticivorans

plasmid pNL1,

complete plasmidsequence.]

[NT:putative inner membrane

protein similar to B.]

Contig076G

3915877_c1_299

638

4764

2928

975

464

2.20E−41

sp:[LN:PER_MOUSE]

[AC:P08399] [GN:PHXR5:PER]

[OR:MUS MUSCULUS]

[DE:PERIOD CLOCK PROTEIN]

[SP:P08399

Contig076G

3922677_c1_266

639

4765

2163

720

2086

6.50E−216

sp:[LN:SYM_ECOLi]

[AC:P00959] [GN:METG]

[OR:

ESCHERICHIA COLI

]

[EC:6.1.1.10] [DE:(METRS)]

[SP:P00959]

Contig076G

3932842_f3_213

640

4766

1122

373

1400

3.20E−143

sp:[LN:TTUC_ECOLI]

[AC:P76251:008475:008474]

[GN:YEAU] [OR:

ESCHERICHIA

COLI

] [EC:1.1.1.93]

[DE:PROBABLE TARTRATE

DEHYDROGENASE, (TDH)]

[SP:P76251:008475:008474]

Contig076G

4114188_f2_144

641

4767

1461

486

1623

7.50E−167

sp:[LN:GABD_ECOLI]

[AC:P25526] [GN:GABD]

[OR:

ESCHERICHIA COLI

]

[EC:1.2.1.16] [DE:SUCCINATE-

SEMIALDEHYDE

DEHYDROGENASE (NADP+),

(SSDH)] [SP:P25526]

Contig076G

413917_12_112

642

4768

318

105

NO-HIT

Contig076G

4164762_f2_143

643

4769

1698

565

1473

5.90E−151

sp:[LN:YEAV_ECOLI]

[AC:P76252:P97208] [GN:YEAV]

[OR:

ESCHERICHIA COLI

]

[DE:PROBABLE TRANSPORT

PROTEIN YEAV]

[SP:P76252:P97208]

Contig076G

4332318_f3_199

644

4770

195

64

224

1.30E−18

pir:[LN:G64051] [AC:G64051]

[PN:ribosomal protein L32]

[GN:rpmF:rpL32] [CL:

Escherichia

coli ribosomal protein L32]

[OR:

Haemophilus influenzae

]

Contig076G

4737825_c3_415

645

4771

1137

378

NO-HIT

Contig076G

4745225_c2_402

646

4772

1254

417

1235

9.80E−126

gp:[GI:g1549751

[LN:TRNCITAB]

[AC:M22041:M11992] [PN:citrate

utilization protein B] [GN:citB]

[OR:Transposon Tn3411]

[SR:Transposon Tn3411 DNA]

[DE:Transposon Tn4311 (from

E. coli

K-12) citrate utilization

proteincitA and citB genes,

complete cds.]

Contig076G

4767018_f3_186

647

4773

603

200

229

3.90E−19

]gp:[GI:g3128260] [N:AF010496]

[AC:AF010496] [PN:hypothetical

protein] [OR:

Rhodobacter

capsulatus

] [DE:

Rhodobacter

capsulatus

strain SB1003, partial

genome:]

Contig076G

4784680_c1_237

648

4774

219

72

NO-HIT

Contig076G

4798403_f3_184

649

4775

633

210

255

6.90E−22

sp:[LN:YIGJ_ECOLI]

[AC:P27846] [GN:YIGJ]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 22.5 KD

PROTEIN IN RECQ-PLDB

INTERGENIC REGION]

[SP:P27846]

Contig076G

4822127_c2_332

650

4776

1869

622

682

8.90E−99

sp:[LN:PRIM_ECOLI]

[AC:P02923:P02922]

[GN:DNAG:DNAP:PARB]

[OR:

ESCHERICHIA COLI

]

[EC:2.7.7.—] [DE:DNA

PRIMASE,] [SP:P02923:P02922)

Contig076G

4863157_c3_470

651

4777

588

195

110

8.50E−05

gp:[GI:c1370362:g4154041]

[LN:MLCB1450] [AC:AL035159]

[PN:putative transcriptional

regulator] [GN:MLCB1450.06c]

[OR:

Mycobacterium leprae

]

[DE:

Mycobacterium leprae

cosmid

B1450.] [NT:MLCB1450.06c,

probable transcriptional regulator,]

Contig076G

4876637_f2_139

652

4778

591

196

139

1.20E−16

pir:[LN:G69292] [AC:G69292]

[PN:tryptophan repressor binding

protein (wrbA) homolog]

[CL:conserved hypothetical

protein YCR004c]

[OR:

Archaeoglobus fulgidus

]

Contig076G

494010_c2_370

653

4779

1242

413

997

1.60E−100

sp:[LN:YHIN_HAEIN]

[AC:P44941] [GN:H10933]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

H10933] [SP:P44941]

Contig076G

4955002_f1_49

654

4780

585

194

175

2.10E−13

sp:[LN:YCED_ECOLI]

[AC:P14189] [GN:YCED:G30K]

[OR:

ESCHERICHIA COLI

]

[DE:

HYPOTHETICAL 19.3 KD

PROTEIN IN RNE−RPMF

INTERGENIC REGION (G30K)]

[SP:P14189]

Contig076G

4968753_f1_6

655

4781

882

293

275

5.30E−24

sp:[LN:GCVA_ECOLI]

[AC:P32064] [GN:GCVA]

[OR:

ESCHERICHIA COLI

]

[DE:ACTIVATOR)] [SP:P32064]

Contig076G

5104593_c1_291

656

4782

1431

476

387

7.10E−36

pir:[LN:E64906] [AC:E64906]

[PN:probable membrane protein

b1522] [OR:

Escherichia coli

]

Contig076G

5117166_f3_172

657

4783

516

171

470

1.10E−44

sp:[LN:NUOE_ECOLI]

[AC:P33601] [GN:NUOE]

[OR:

ESCHERICHIA COLI

]

[EC:1.6.5.3]

[DE:OXIDOREDUCTASE

CHAIN 5) (NUO5)] [SP:P33601]

Contig076G

5270343_c1_302

658

4784

621

206

196

1.20E−15

sp:[LN:YRHP_BACSU]

[AC:005406] [GN:YRHP]

[OR:

BACILLUS SUBTILIS

]

[DE:HYPOTHETICAL 23.4 KD

PROTEIN IN AAPA-SIGV

INTERGENIC REGION]

[SP:005406]

Contig076G

5338513_f1_20

659

4785

1899

632

1709

5.80E−176

sp:[LN:NUOL_ECOLI]

[AC:P33607:P78254] [GN:NUOL]

[OR:

ESCHERICHIA COLI

]

[EC:1.6.5.3]

[DE:OXIDOREDUCTASE

CHAIN 12) (NUO12)]

[SP:P33607:P78254]

Contig076G

5859426_f3_194

660

4786

531

176

542

2.70E−52

sp:[LN:BFRA_NEIGO]

[AC:P72080] [GN:BFRA]

OR:

NEISSERIA

GONORRHOEAE

]

[DE:BACTERIOFERRITIN A]

[SP:P72080]

Contig076G

5944678_f2_109

661

4787

645

214

718

6.00E−71

pir:[LN:A65026]

[AC:A65026:523412] [PN:uracil

phosphoribosyltranslerase upp]

[GN:upp] [CL:uracil

phosphoribosyltransferase upp]

[OR:

Escherichia coli

] [EC:2.4.2.9]

Contig076G

5959677_f2_86

662

4788

300

99

162

4.50E−10

gp:[GI:c258467:g1491621]

[LN:BHTIUL] [AC:Z78205]

[PN:UL36] [OR:

Bovine

herpesvirus

1] [DE:

Bovine

herpesvirus

type 1 UL22-35

genes.] [NT:very large tegument

protein]

Contig076G

5986268_c1_244

663

4789

936

311

768

3.00E−76

sp:[LN:YCIL_ECOLI]

[AC:P37765] [GN:YCIL]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 32.7 KD

PROTEIN IN TRPL-BTUR

INTERGENIC REGION (ORF4)]

[SP:P37765]

Contig076G

6117202_c3_412

664

4790

1230

409

1120

1.50E−113

gp:[GI:g2384564]

[LN:PAU70470] [AC:U70470]

[PN:beta-ketoacyl-ACP synthase I]

[GN:fabB] [OR:

Pseudomonas

aeruginosa

] [DE:

Pseudomonas

aeruginosa

lemA-type sensor

kinase/response regulatorhomolog

gene, partial cds, beta-hydroxy-

ACP dehydrase (fabA) andbeta-

ketoacyl-ACP synthase I (fabB)

genes, complete cds.]

Contig076G

6269037_f3_209

665

4791

849

282

398

4.90E−37

sp:[LN:YFIH_ECOLI]

[AC:P33644:Q46989] [GN:YFIH]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 26.3 KD

PROTEIN IN SFHB-CLPB

INTERGENIC REGION]

[SP:P33644:Q46989]

Contig076G

6728176_f3_183

666

4792

210

69

91

0.00017

pir:[LN:S01844] [AC:S01844]

[PN:fibroin] [CL:silk fibroin]

[OR:

Bombyx mori

] [SR:,

silkworm]

Contig076G

6754675_f2_141

667

4793

594

197

NO-HIT

Contig076G

6839843_f2_132

668

4794

573

190

NO-HIT

Contig076G

7225925_c3_507

669

4795

957

318

309

1.30E−27

sp:[LN:NAC_ECOLI]

[AC:Q470051 [GN:NAC]

[OR:

ESCHERICHIA COLI

]

[DE:CONTROL PROTEIN)]

[SP:Q47005]

Contig076G

782962_c3_513

670

4796

960

319

400

3.00E−37

sp:[LN:GCVA_ECOLI]

[AC:P32064] [GN:GCVA]

[OR:

ESCHERICHIA COLI

]

[DE:ACTIVATOR)] [SP:P32064]

Contig076G

785952_c2_324

671

4797

561

186

NO-HIT

Contig076G

866252_c2_371

672

4798

183

60

NO-HIT

Contig076G

892208_c1_304

673

4799

945

314

294

5.10E−26

gp:[GI:c1294004:g3152946]

[LN:ACA6238] [AC:AJ006238]

[GN:nac] [OR:

Azorhizobium

caulinodans] [DE:

Azorhizobium

caulinodans nac gene.]

Contig076G

909552_f3_163

674

4800

618

205

122

1.30E−06

pir:[LN:G70325] [AC:G70325]

[PN:transcription regulator

TetR/AcrR family] [GN:acrR3.]

[OR:Aquifex aeolicus]

Contig076G

959686_f1_61

675

4801

708

235

NO-HIT

Contig076G

9797752_c2_369

676

4802

1689

562

227

1.00E−15

gp:[GI:g4139250] [LN:AF110185]

[AC:AF110185] [PN: unknown]

[OR:

Burkholderia pseudomallei

]

[DE:

Burkholderia pseudomallei

strain 1026b DbhB (dbhB),

generalsectetory pathway protein

D (gspD), general secretory

pathwayprotein E (gspE), general

secretory pathway protein F

(gspF), GspC(gspC), general

secretory pathway protein G

(gspG), generalsecretory pathway

protein H (gspH), general secretory

pathwayprotein I (gspI), general

secretory pathway protein J

(gspJ), general secretory pathway

protein K (gspK), general

secretorypathway protein L (gspL),

general secretory pathway protein

M(gspM), and general secretory

pathway protein N (gspN)

genes, complete cds; and unknown

genes.] [NT:similar to

Escherichia

coli

EmrB protein; orfF]

Contig076G

9803385_f1_44

677

4803

771

256

202

2.90E−16

sp:[LN:BIOH_ECOLI]

[AC:P13001] [GN:BIOH:BIOB]

[OR:

ESCHERICHIA COLI

]

[DE:BIOH PROTEIN]

[SP:P13001]

Contig076G

9806577_c1_301

678

4804

192

63

NO-HIT

Contig076G

9979712_f1_65

679

4805

972

323

791

1.10E−78

sp:[LN:YEAX_ECOLI]

[AC:P76254:O07972:O07970]

[GN:YEAX] [OR:

ESCHERICHIA

COLI

] [EC:1,—,—,—]

[DE:PUTATIVE DIOXYGENASE

BETA SUBUNIT YEAX.]

[SP:P76254:O07972:O07970]

Contig081G

10055456_f3_142

680

4806

396

131

NO-HIT

Contig081G

10345150_f1_9

681

4807

780

259

557

6.90E−54

sp:[LN:LLDR_ECOLI]

[AC:P33233] [GN:LLDR:LCTR]

[OR:

ESCHERICHIA COLI

]

[DE:PUTATIVE L-LACTATE

DEHYDROGENASE OPERON

REGULATORY PROTEIN]

[SP:P33233]

Contig081G

1050637_f3_158

682

4808

474

157

NO-HIT

Contig081G

10587808_f3_163

683

4809

1701

566

2023

3.10E−209

sp:[LN:SFCA_ECOLI]

[AC:P26616:P78224]

[GN:SFCA:MAEA]

[OR:

ESCHERICHIA COLI

]

[EC:1.1.1.38] [DE:PROBABLE

MALATE OXIDOREDUCTASE

(NAD), (MALIC ENZYME)]

[SP:P26616:P78224]

Contig081G

10633337_f1_56

684

4810

450

149

215

1.20E−17

sp:[LN:ATPZ_PSEPU]

[AC:P25760] [GN:ATPI:UNCI]

[OR:PSEUDOMONAS PUTIDA]

[DE:ATP SYNTHASE PROTEIN

I] [SP:P25760]

Contig081G

10658436_f2_98

685

4811

798

265

222

2.20E−18

gp:[GI:g4097163]

[LN:PMU46488] [AC:U46488]

[PN:NrpG] [GN:nrpG]

[OR:

Proteus mirabilis

]

[DE:

Proteus mirabilis

NrpS (nrpS)

gene, partial cds, NrpU (nrpU),

NrpT(nrpT), NrpA (nrpA), NrpB

(nrpB), NrpG (nrpG) and IrpP

(irpP)genes, complete cds.]

Contig081G

10818825_f1_17

686

4812

1269

422

1081

2.10E−109

gp:[GI:g2384564]

[LN:PAU70470] [AC:U70470]

[PN:beta-ketoacyl-ACP synthase I]

[GN:fabB] [OR:

Pseudomonas

aeruginosa

] [DE:

Pseudomonas

aeruginosa

lemA-type sensor

kinase/response regulatorhomolog

gene, partial cds, beta-hydroxy-

ACP dehydrase (fabA) andbeta-

ketoacyl-ACP synthase I (fabB)

genes, complete cds.]

Contig081G

10962890_f1_24

687

4813

414

137

264

7.70E−23

gp:[GI:g2407234] [LN:AF017750]

[AC:AF017750] [GN:hypo117]

[OR:

Haemophilus ducreyi

]

[DE:

Haemophilus ducreyi

cytochrome C-type biogenesis

protein (ccmH),recombinational

DNA repair protein (recR),

manganese superoxidedismutase

(sodA), and CitG protein homolog

(citG) genes, completecds.]

[NT:similar to

Haemophilus

influenzae

product encoded]

Contig081G

10972562_f3_151

688

4814

1800

599

229

2.70E−16

pir:[LN:C70979] [AC:C70979]

[PN:probable fadE25 protein]

[GN:fadE25] [CL:acyl-COA

dehydrogenase]

[OR:

Mycobacterium tuberculosis

]

Contig081G

1260915_c1_233

689

4815

342

113

NO-HIT

Contig081G

13790927_c1_242

690

4816

1374

457

1544

1.80E−158

sp:[LN:RFBB_VIBCH]

[AC:Q06951] [GN:RFBB]

[OR:

VIBRIO CHOLERAE

]

[EC:5.4.2.8]

[DE:PHOSPHOMANNOMUTAS

E. (PMM)] [SP:Q06951]

Contig081G

14333250_c2_256

691

4817

828

275

557

6.90E−54

sp:[LN:ZNUC_HAEIN]

[AC:P44692] [GN:ZNUC:H10408]

[OR:

HAEMOPHILUS

INFLUENZAE

] [DE:HIGH-

AFFINITY ZINC UPTAKE

SYSTEM ATP-BINDING

PROTEIN ZNUC] [SP:P44692]

Contig081G

14537687_f1_49

692

4818

336

111

NO-HIT

Contig081G

14645437_f1_29

693

4819

1389

462

892

2.20E−89

gp:[GI:g903977] [LN:BCU29532]

[AC:U29532] [PN:MopB]

[GN:mopB] [FN:4-methyl-o-

phthalatelphthalate permease]

[OR:

Burkholderia cepacia

]

[DE:

Burkholderia cepacia

plasmid

pMOP PdxA homolog gene,

partial cds,4-methyl-o-phthalate

reductase (mopA) and 4-methyl-o-

phthalatepermease (mopB) genes,

complete cds.]

Contig081G

14666275_c3_337

694

4820

1902

633

808

4.00E−121

sp:[LN:SYR_BACSU]

[AC:P46906] [GN:ARGS]

[OR:

BACILLUS SUBTILIS

]

[EC:6.1.1.19] [DE:ARGINYL-

TRNA SYNTHETASE,

(ARGININE−-TRNA LIGASE)

(ARGRS)] [SP:P46906]

Contig081G

14721063_f1_36

695

4821

519

172

NO-HIT

Contig081G

15057877_f2_112

696

4822

1410

469

1934

8.30E−200

pir:[LN:D64071] [AC:D64071]

[PN:H+-transporting ATP

synthase, beta chain] [CL:H+-

transporting ATP synthase alpha

chain:H+-transporting ATP

synthase alpha chain homology]

[OR:

Haemophilus influenzae

]

[EC:36.1.34]

Contig081G

15759625_f3_168

697

4823

879

292

796

3.30E−79

sp:[LN:ATP6_ECOLI]

[AC:P00855:Q47708]

[GN:ATPB:UNCB:PAPD]

[OR:

ESCHERICHIA COLI

]

[EC:3.6.1.34] [DE:ATP

SYNTHASE A CHAIN,

(PROTEIN 6)]

[SP:P00855:Q47708]

Contig081G

15837750_f3_152

698

4824

396

131

89

0.00049

sp:[LN:YCS3_HAEIN]

[AC:P44139] [GN:H11253]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

H11253] [SP:P44139]

Contig081G

19548503_f2_107

699

4825

216

71

NO-HIT

Contig081G

19666715_f1_63

700

4826

612

203

506

1.80E−48

pir:[LN:523107]

[AC:S23107:S41694:A49696:B65

121] [PN:N-

formylmethionylaminoacyl-tRNA

deformylase,] [GN:def:fms]

[CL:polypeptide deformylase]

[OR:

Escherichia coli

]

[EC:3.5.1.27]

Contig081G

19727265_f1_46

701

4827

603

200

179

2.60E−16

pir:[LN:C55543] [AC:C55543]

[PN:cmaU protein] [GN:cmaU]

[OR:

Pseudomonas syringae

pv.

syringae

]

Contig081G

19742937_f2_93

702

4828

276

91

152

6.70E−09

pir:[LN:G70944] [AC:G70944]

[PN:probable polyketide synthase]

[GN:pks12] [CL:[acyl-carrier-

protein] S-malonyltransferase

homology:3-oxoacyl-[acyl-carrier-

protein] synthase 1 homology]

[OR:

Mycobacterium tuberculosis

]

Contig081G

2126693_f1_59

703

4829

432

143

334

2.90E−30

sp:[LN:ATPE_ECOLI]

[AC:P00832]

[GN:ATPC:UNCC:PAPG]

[OR:

ESCHERICHIA COLI

]

[EC:3.6.1.34] [DE:ATP

SYNTRASE EPSILON CHAIN,]

[SP:P00832]

Contig081G

21666540_c1_205

704

4830

696

231

1128

2.10E−114

gp:[GI:g1119228]

[LN:TRN15AAA] [AC:M12900]

[GN:P12] [OR:Transposon

Tn1525] [SR:Transposon Tn1525

DNA] [DE:Insertion sequence

IS15-R, complete cds.]

[NT:putative] [RE:

Contig081G

21758260_c3_313

705

4831

339

112

NO-HIT

Contig081G

22079827_f3_128

706

4832

1731

576

1741

2.40E−179

sp:[LN:LDHD_HAEIN]

[AC:P45295] [GN:DLD:H11649]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:1.1.1.28]

[DE:D-LACTATE

DEHYDROGENASE,]

[SP:P45295]

Contig081G

22187_c1_219

707

4833

1005

334

244

1.00E−20

gp:[GI:d1013492:g1841365]

[LN:D85415] [AC:D85415]

[PN:LysR-type regulator]

[GN:tdnR] [OR:

Pseudomonas

putida

] [SR:

Pseudomonas putida

(strain:UCC22) DNA]

[DE:

Pseudomonas putida

gene for

conversion of aniline to catechol.]

Contig081G

22369062_f1_65

708

4834

2124

707

1675

2.30E−172

gp:[GI:d1006209:g1498191]

[LN:PSEOPRC] [AC:D28119]

[PN:outer membrane protein C]

[OR:

Pseudomonas aeruginosa

]

[SR:

Pseudomonas aeruginosa

,

(strain PAOI). DNA, (clone

pTN100)] [DE:

Pseudomonas

aeruginosa

oprC gene for outer

membrane protein C,complete

cds.]

Contig081G

22663952_f3_132

709

4835

999

332

1173

3.70E−119

sp:[LN:CPPM_SALTY]

[AC:Q56062] [GN:PRPB]

[OR:

SALMONELLA

TYPHIMURIUM

] [EC:2.7.8.—]

[DE:(CPEP

PHOSPHONOMUTASE)]

[SP:Q56062]

Contig081G

22679628_f1_44

710

4836

882

293

223

4.60E−29

pir:[LN:B71346] [AC:B71346]

[PN:probable SpoOJ regulator

(soj)] [GN:TP0272]

[CL:regulatory protein spoOJ]

[OR:

Treponema pallidum

subsp.

pallidum

] [SR:,

syphilis

spirochete

]

Contig081G

22775313_f1_40

711

4837

1278

425

NO-HIT

Contig081G

23475707_f3_174

712

4838

690

229

329

1.00E−29

pir:[LN:C55208] [AC:C55208]

[PN:socA3 protein] [GN:socA3]

[OR:

Myxococcus xanthus

]

Contig081G

23555332_c3_338

713

4839

678

225

110

0.00061

sp:[LN:FTSN_ECOLI]

[AC:P29131] [GN:FTSN:MSGA]

[OR:

ESCHERICHIA COLI

]

[DE:CELL DIVISION PROTEIN

FTSN] [SP:P29131]

Contig081G

23627250_f2_169

714

4840

279

92

276

4.10E−24

sp:[LN:ATPL_HAEIN]

[AC:P43721] [GN:ATPE:H10484]

[OR:HAEMOPHILUS

INFLUENZAE] [EC:3.6.1.34]

[DE:(DICYCLOHEXYLCARBOD

IIMIDE−BINDING PROTEIN)]

[SP:P43721]

Contig081G

23628463_f2_92

715

4841

1038

345

651

7.60E−64

gp:[GI:g2228238) [LN:PPU242#5]

[AC:U24215] [PN:enoly-

cocnzyme A hydratase]

[OR:Pseudomonas putida]

[DE:Pseudomonas putida p-

cymene catabolism (cym) and p-

cumatecatabolism (cmt) operons

and enol-coenzyme A hydratase

gene,complete cds.]

Contig081G

23631308_f3_154

716

4842

459

152

336

1.80E−30

sp:[LN:YQJF#ECOLI]

[AC:P42619] [GN:YQJF]

[OR:ESCHERICHIA COLI]

[DE:HYPOTHETICAL 17.2 KD

PROTEIN IN EXUR-TDCC

INTERGENIC REGION]

[SP:P42619]

Contig081G

23632750_f3_135

717

4843

633

210

NO-HIT

Contig081G

23650250_f1_41

718

4844

1869

622

158

2.50E−08

pir:[LN:507463] [AC:S07463]

[PN:dihydroflavonol-4-reductase,]

[OR:Petunia x hybrida] [SR:,

garden petunia] [EC:1.-.-.-]

Contig081G

23729800_f3_121

719

4845

891

296

820

9.30E−82

sp:[LN:GALU_HAEIN]

[AC:P44878] [GN:GALU:H10812]

[OR:HAEMOPHILUS

INFLUENZAE] [EC:2.7.7.9]

[DE:URIDYLYLTRANSFERASE)

(URIDINE

DIPHOSPHOGLUCOSE

PYROPHOSPHORYLASE)]

[SP:P44878]

Contig081G

2376012_f1_15

720

4846

909

302

243

1.30E−20

pir:[LN:S76841] [AC:S76841]

[PN:hypothetical protein]

[OR:Synechocystis sp.] [SR:PCC

6803,, PCC 6803] [SR:PCC 6803,]

Contig081G

24020292_f2_82

721

4847

396

131

118

2.30E−07

sp:[LN:YIGD_ECOLI]

[AC:P37163] [GN:YJGD]

[OR:ESCHERICHIA COLI]

[DE:HYPOTHETICAL 15.6 KD

PROTEIN IN ARGI-VALS

INTERGENIC REGION (0138)]

[SP:P37163]

Contig081G

24235302_f3_136

722

4848

336

111

NO-HIT

Contig081G

24251558_f1_26

723

4849

1455

484

1422

1.50E−145

sp:[LN:CYCA_ECOLI]

[AC:P39312] [GN:CYCA:DAGA]

[OR:

ESCHERICHIA COLI

]

[DE:D-SERINEID-

ALANINEIGLYCINE

TRANSPORTER] [SP:P39312]

Contig081G

24277167_f2_90

724

4850

1149

382

972

7.30E−98

sp:[LN:ACDB_BACSU]

[AC:P45857] [GN:MMGC]

[OR:

BACILLUS SUBTILIS

]

[EC:1.3.99.—] [DE:ACYL-COA

DEHYDROGENASE,]

[SP:P45857]

Contig081G

2539043_c1_178

725

4851

204

67

NO-HIT

Contig081G

25391453_f1_42

726

4852

282

93

NO-HIT

Contig081G

25478463_f1_47

727

4853

792

263

389

4.40E−36

sp:[LN:S3AD_KLEPN]

[AC:P08881] [GN:AADA]

[OR:

KLEBSIELLA

PNEUMONIAE

] [EC:2.7.7.47]

[DE:STREPTOMYCIN 3″-

ADENYLYLTRANSFERASE,]

SP:P08881]

Contig081G

25552187_f2_77

728

4854

189

62

NO-HIT

Contig081G

25970928_c2_248

729

4855

1227

408

NO-HIT

Contig081G

26449075_c2_258

730

4856

939

312

490

8.70E−47

pir:[LN:F65017] [AC:F65017]

[PN:hypothetical protein b2431]

[OR:

Escherichia coli

]

Contig081G

26587800_c2_250

731

4857

1155

384

559

4.20E−54

sp:[LN:SMF_HAEIN]

[AC:P43862]

[GN:SMF:DPRA:H10985]

[OR:

HAEMOPHILUS

INFLUENZAE

] [DE:SMF

PROTEIN (DNA PROCESSING

CHAIN A)] [SP:P43862]

Contig081G

26601463_f1_32

732

4858

723

240

432

1.20E−40

gp:[GI:g4103042] [LN:AF019654]

[AC:AF019654]

[PN:transcriptional activator]

[GN:ccpR] [FN:transcriptional

activator; involved in the]

[OR:

Burkholderia cepacia

]

[DE:

Burkholderia cepacia

putative

acyl homoserine lactone

synthase(cept) and transcriptional

activator (cepR) genes, complete

cds.] [NT:member of luxR family

of transcriptional]

Contig081G

26603408_c2_257

733

4859

813

270

454

5.70E−43

sp:[LN:ZNUB_HAEIN]

[AC:P44691] [GN:ZNUB:H10407]

[OR:

HAEMOPHILUS

INFLUENZAE

] [DE:HIGH-

AFFINITY ZINC UPTAKE

SYSTEM MEMBRANE

PROTEIN ZNUB] [SP:P44691]

Contig081G

26752186_c3_319

734

4860

1233

410

667

1.50E−65

gp:[GI:g1498494]

[LN:SLU63848] [AC:U63848]

[OR:

Streptomyces lividans

]

[DE:

Streptomyces lividans

sensor

protein homolog gene, complete

cds,and right LTR junction

sequence.] [NT:ORF2; homolog to

sensor protein of a putative]

Contig081G

26758552_f2_73

735

4861

1176

391

1519

7.90E−156

sp:[LN:CISZ_SALTY]

[AC:Q56063] [GN:PRPC]

[OR:

SALMONELLA

TYPHIMURIUM

] [EC:4.1.3.7]

[DE:POSSIBLE CITRATE

SYNTHASE 2,] [SP:Q56063]

Contig081G

2867328_c2_277

736

4862

567

188

362

3.20E−33

gp:[GI:g4103043] [LN:AF019654]

[AC:AF019654] [PN:putative acyl

homoserine lactone synthase]

[GN:cepl] [OR:

Burkholderia

cepacia

] [DE:

Burkholderia

cepacia putative acyl homoserine

lactone synthase(cepl) and

transcriptional activator (cepR)

genes, complete cds.] [NT:luxI

homolog]

Contig081G

29297325_c1_224

737

4863

723

240

187

1.10E−14

pir:[LN:572165] [AC:572165]

[PN:hypothetical protein 4]

[CL:short-chain alcohol

dehydrogenase homology]

[OR:

Rhizobium leguminosarum

bv.

viciae

]

Contig081G

29300142_f1_175

738

4864

948

315

363

2.50E−33

gp:[GI:g3378276] [LN:AF079317]

[AC:AF079317] [PN:unknown]

[GN:orf114] [OR:

Sphingomonas

aromaticivorans

]

[DE:

Sphingomonas

aromaticivorans

plasmid pNL1,

complete plasmidsequence.]

[NT:putative inner membrane

lipocalin protein similar]

Contig081G

29414008_f2_78

739

4865

1530

509

NO-HIT

Contig081G

30486665_f2_126

740

4866

1782

593

2145

3.60E−222

sp:[LN:LLDP_ECOLI]

[AC:P33231] [GN:LLDP:LCTP]

[OR:

ESCHERICHIA COLI

]

[DE:L-LACTATE PERMEASE]

[SP:P33231]

Contig081G

30650302_f2_91

741

4867

756

251

791

1.10E−78

gp:[GI:g755067] [LN:RHMRPST]

[AC:L39265] [PN:enoyl CoA

hydratase] [GN:fadB1]

[OR:

Rhizobium meliloti

]

[SR:

Rhizobium meliloti

(strain

1021) DNA] [DE:

Rhizobium

meliloti

1021 ribosomal protein

S20 (rpS20), enoyl CoAhydratase

(fadB1), dnaA, orfX, genes,

complete cds, and

orfY,formamidopyrimidine-DNA

glycosylase (fpg) genes, partial

cds.]

Contig081G

30737817_f3_122

742

4868

1278

425

496

2.00E−47

pir:[LN:H70301] [AC:H70301]

[PN:nucleotide sugar

dehydrogenase] [GN:nsd]

[CL:GDPmannose dehydrogenase]

[CR:

Aquifex aeolicus

]

Contig081G

31306881_c2_298

743

4869

216

71

NO-HIT

Contig081G

31679561_f3_149

744

4870

1677

558

940

1.80E−94

sp:[LN:ACSA_BACSU]

[AC:P39062] [GN:ACSA]

[OR:

BACILLUS SUBTILIS

]

[EC:6.2.1.1] [DE:ACTIVATING

ENZYME) (ACETYL-COA

SYNTHASE)] [SP:P39062]

Contig081G

31807635_f3_144

745

4871

1179

392

895

1.10E−89

sp:[LN:ALR2_KLEAE]

[AC:030746] [GN:DADB]

[OR:

KLEBSIELLA

AEROGENES

] [EC:5.1.1.1]

[DE:ALANINE RACEMASE,

CATABOLIC,] [SP:030746]

Contig081G

32225078_f1_4

746

4872

615

204

600

1.90E−58

pir:[LN:D70037] [AC:D70037]

[PN:capsular polysaccharide

biosynthesis homolog yvfC]

[GN:yvfC] [OR:

Bacillus subtilis

]

Contig081G

32292_f1_18

747

4873

780

259

165

2.50E−12

pir:[LN:B70509] [AC:B70509]

[PN:hypothetical protein Rv1231c]

[GN:Rv1231c]

[OR:[Mycobacterium tuberculosis]

Contig081G

32453175_c3_376

748

4874

2097

698

794

5.30E−79

pir:[LN:S74457] [AC:S74457]

[PN:ferrichrome-iron receptor

3:protein slr1490:protein slr1490]

[GN:fbuA_3] [CL:ferrichrome-

iron receptor 1:tonB-dependent

receptor amino-terminal

homology:tonB-dependent

receptor carboxyl-terminal

homology] [OR:Synechocystis sp.]

[SR:PCC 6803, PCC 6803]

ISR:PCC 6803,]

Contig081G

32471007_f1_22

749

4875

1290

429

1393

1.80E−142

sp:[LN:DADA_ECOLI]

[AC:P29011] [GN:DADA:DADR]

[OR:

ESCHERICHIA COLI

]

[EC:1.4.99.1] [DE:D-AMINO

ACID DEHYDROGENASE

SMALL SUBUNIT,] [SP:P29011]

Contig081G

33456381_c3_372

750

4876

216

7

NO-HIT

Contig081G

33786251_f2_95

751

4877

3018

1005

492

7.90E−74

pir:[LN:E71280] [AC:E71280]

[PN:probable antibiotic transport

protein] [GN:TP0790]

[OR:

Treponema pallidum

subsp.

pallidum

] [SR:,

syphilis

spirochete

]

Contig081G

3395002_f3_119

752

4878

687

228

605

5.70E−59

gp:[GI:g3435182] [LN:AF061251]

[AC:AF061251] [PN:WbdR]

[GN:wbdR] [OR:

Escherichia coli

]

[DE:

Escherichia coli

serotype

0157:H7 O antigen gene cluster.]

Contig081G

33994625_f3_148

753

4879

912

303

745

8.30E−74

sp:[LN:D3HI_RAT] [AC;P29266]

[OR:

RATTUS NORVEGICUS

]

[EC:1.1.1.31] [DE:(FRAGMENT)]

[SP:P29266]

Contig081G

34173382_f3_170

754

4880

1572

523

1979

1.40E−204

sp:[LN:ATPA_VIBAL]

[AC:P12985] [GN:ATPA:UNCA]

[OR:

VIBRIO ALGINOLYTICUS

]

[EC:3.6.1.34] [DE:ATP

SYNTHASE ALPHA CHAIN,]

[SP:P12985]

Contig081G

34416562_f3_177

755

4881

603

200

125

8.90E−07

pir:[LN:H69974] [AC:H69974]

[PN:probable transcription

regulator yrhl] [GN:yrhl]

[CL:

Bacillus subtilis

probable

transcription regulator yrhl]

[OR:

Bacillus subtilis

]

Contig081G

34579625_f3_176

756

4882

225

74

NO-HIT

Contig081G

34585928_f1_50

757

4883

966

321

348

9.70E−32

gp:[GI:g4521959]

[LN:AFACHRRA] [AC:J05278]

[PN:pirin] [OR:

Ralstonia

eutropha

] [DE:

Ralstonia eutropha

ChrB (chrB), ChrA (chrA), ChrC

(chrC), ChrD(chrD), YbiB (ybiB),

pirin, and heat shock protein sigma

32 (RP32)genes, complete cds.]

Contig081G

35828407_f1_14

758

4884

2628

875

1065

5.30E−195

pir:[LN:F70873] [AC:F70873]

[PN:aconitate hydratase,] [GN:acn]

[CL:iron-responsive element-

binding protein]

[OR:

Mycobacterium tuberculosis

]

[EC:4.2.1.3]

Contig081G

35969376_c3_345

759

4885

696

231

628

2.10E−61

sp:[LN:DEDA_ECOLI]

[AC:P09548] [GN:DEDA]

[OR:

ESCHERICHIA COLI

]

[DE:DEDA PROTEIN (DSG-1

PROTEIN)] [SP:P09548]

Contig081G

36069753_f1_35

760

4886

3981

1326

1242

1.20E−165

gp:[GI:g3510629] [LN:AF047828]

[AC:AF047828]

[PN:

syringomycin synthetase

]

[GN:syrE] [OR:

Pseudomonas

syringae

pv.

syringae

]

[DE:

Pseudomonas syringae

pv.

syringae syringomycin synthetase

(syrE)gene, complete cds.]

[NT:SyrE; peptide synthetase]

Contig081G

36192627_f1_2

761

4887

585

194

134

2.70E−07

pir:[LN:F22845] [AC:F22845]

[PN:hypothetical protein 6]

[OR:mitochondrion

Trypanosoma

brucei

]

Contig081G

36597656_f3_118

762

4888

213

70

NO-HIT

Contig081G

3786_c3_321

763

4889

711

236

NO-HIT

Contig081G

3924026_f2_99

764

4890

444

147

NO-HIT

Contig081G

3941891_f2_84

765

4891

1173

390

101

0.00064

pir:[LN:D69315] [AC:D69315]

[PN:

hypothetical protein AF0524]

[OR:

Archaeoglobus fulgidus

]

Contig081G

4064132_c3_378

766

4892

336

111

NO-HIT

Contig081G

4074128_f1_48

767

4893

555

184

296

3.10E−26

sp:[LN:YQJI_ECOLI]

[AC:Q46872] [GN:YQJI]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 23.4 KD

PROTEIN IN RPOD-AER

INTERGENIC REGIION]

[SP:Q46872]

Contig081G

4167128_f2_111

768

4894

879

292

938

2.90E−94

sp:[LN:ATPG_VIBAL]

[AC:P12990] [GN:ATPG:UNCG]

[OR:

VIBRIO ALGINOLYTICUS

]

[EC:3.6.1.34] [DE:ATP

SYNTHASE GAMMA CHAIN,]

[SP:P12990]

Contig081G

4167575_c2_300

769

4895

1284

427

1346

1.70E−137

sp:[LN:TYRB_ECOLI]

[AC:P04693] [GN:TYRB]

[OR:

ESCHERICHIA COLI

]

[EC:2.6.1.57] [DE:AROMATIC-

AMINO-ACID

AMINOTRANSFERASE,

(AROAT) (ARAT)] [SP:P04693]

Contig081G

4179837_c1_181

770

4896

585

194

351

4.70E−32

sp:[LN:YRDC_ECOLI]

[AC:P45748] [GN:YRDC]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 20.8 KD

PROTEIN IN AROE−SMG

INTERGENIC REGION]

[SP:P45748]

Contig081G

4343840_f2_102

771

4897

1578

525

1887

8.00E−195

sp:[LN:GUAA_HAEIN]

[AC:P44335]

[GN:GUAA:H10222]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:6.3.5.2]

[DE:AMIDOTRANSFERASE)

(GMP SYNTHETASE)]

[SP:P44335]

Contig081G

4344465_f3_165

772

4898

849

282

134

7.30E−13

sp:[LN:ZNUA_HAEIN]

[AC:P44526] [GN:ZNUA:HI0119]

[OR:

HAEMOPHILUS

INFLUENZAE

] [DE:HIGH-

AFFINITY ZINC UPTAKE

SYSTEM PROTEIN ZNUA]

[SP:P44526]

Contig081G

4383392_c3_320

773

4899

774

257

286

3.60E−25

sp:[LN:YEAM_ECOLI]

[AC:P76241] [GN:YEAM]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL

TRANSCRIPTIONAL

REGULATOR IN GAPA-RND

INTERGENIC REGION]

[SP:P76241]

Contig081G

4426000_f3_140

774

4900

699

232

503

3.60E−48

sp:[LN:RLUA_HAEIN]

[AC:P44782] [GN:RLUA:H10617]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:4.2.1.70]

[DE:(

PSEUDOURIDYLATE

SYNTHASE

) (URACIL

HYDROLYASE)] [SP:P44782]

Contig081G

4539067_f1_27

775

4901

1584

527

1594

8.90E−164

sp:[LN:MMSA_RAT]

[AC:Q02253] [GN:MMSDH]

[OR:

RATTUS NORVEGICUS

]

[EC:1.2.1.27] [DE:(EC 1.2.1.27)

(MMSDH)] [SP:Q02253]

Contig081G

4564808_c2_276

776

4902

426

141

NO-HIT

Contig081G

4721037_f2_104

777

4903

663

220

265

6.00E−23

sp:[LN:YIGK_ECOLI]

[AC:P27847] [GN:YIGK]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 15.4 KD

PROTEIN IN RECQ-PLDB

INTERGENIC REGION (F138)]

[SP:P27847]

Contig081G

4725811_c3_383

778

4904

201

66

NO-HIT

Contig081G

4804068_c3_344

779

4905

1239

412

115

3.50E−07

pir:[LN:S74329] [AC:S74329]

[PN:hypothetical protein sll0412]

[OR:Synechocystis sp.] [SR:PCC

6803, , PCC 6803] [SR:PCC 6803.]

Contig081G

4804175_f1_1

780

4906

441

146

508

1.10E−48

gp:[GI:g3241975] [LN:55U85710]

[AC:U85710] [PN:transposase]

[OR:

Sulfolobus solfataricus

]

[DE:

Sulfolobus solfataricus

insertion element ISC1041,

transposasegene, complete cds.]

Contig081G

48127_c2_286

781

4907

513

170

417

4.70E−39

sp:[LN:LRP_ECOLI]

[AC:P19494]

[GN:LRP:ALSB:LIVR:IHB:OPPI]

[OR:

ESCHERICHIA

COLI

:

ENTEROBACTER

AEROGENES

]

[SR:,

AEROBACTER

AEROGENES

] [DE:LEUCINE-

RESPONSIVE REGULATORY

PROTEIN] [SP:P19494]

Contig081G

4812818_f2_109

782

4908

480

159

432

1.20E−40

sp:[LN:ATPF_VIBAL]

[AC:P12989] [GN:ATPF:UNCF]

[OR:

VIBRIO ALGINOLYTICUS

]

[EC:3.6.1.34] [DE:ATP

SYNTHASE B CHAIN.]

[SP:P12989]

Contig081G

4875438_f1_5

783

4909

1185

394

505

2.20E−48

gp:[GI:g191 1763] [LN:583460]

[AC:583460]

[GN:rfbE(EcO157:H7)]

[OR:

Escherichia coli

]

[SR:

Escherichia coli

0157:H7

strain 86-24]

[DE:rtbE(EcO157:H7)=perosamine

synthetase homolog [

Escherichia

coli

,O157:H7 strain 86-24,

Genomic, 1287 nt].]

[NT:

perosamine synthetase

homolog; This sequence comes]

Contig081G

4883437_f1_51

784

4910

696

231

328

1.30E−29

sp:[LN:YIV8_YEAST]

[AC:P40582] [GN:YIR038C]

[OR:

SACCHAROMYCES

CEREVISIAE

] [SR:,BAKER'S

YEAST] [DE:HYPOTHETICAL

26.8 KD PROTEIN IN HYRI

3′REGION] [SP:P40582]

Contig081G

4892201_c1_196

785

4911

267

88

NO-HIT

Contig081G

4949083_f2_110

786

4912

549

182

290

1.40E−25

sp:[LN:ATPD)VIBAL]

[AC:P12987] [GN:ATPH:UNCH]

[OR:

VIBRIO ALGINOLYTICUS

]

[EC:3.6.1.34] ]DE:ATP

SYNTHASE DELTA CHAIN.]

[SP:P12987]

Contig081G

4975000_c3_315

787

4913

1173

390

136

8.70E−07

sp:[LN:XKDP_BACSU]

[AC:P54355] [GN:XKDP]

[OR:

BACILLUS SUBTILIS

]

[DE:PHAGE-LIKE ELEMENT

PBSX PROTEIN XKDP]

[SP:P54355]

Contig081G

5117150_f3_127

788

4914

1158

385

1733

1.70E−178

sp:[LN:LDD_ECOLI]

[AC:P33232] [GN:LLDD:LCTD]

[OR:

ESCHERICHIA COLI

]

[EC:1.1.2.3] [DE:L-LACTATE

DEHYDROGENASE

(CYTOCHROME),] [SP:P33232]

Contig081G

56250_f1_64

789

4915

432

143

NO-HIT

Contig081G

5860643_f1_3

790

4916

1173

390

556

8.80E−54

pir:[LN:S70157] [AC:S70157]

[PN:cpsF protein, 40.6K]

[GN:cpsF] [OR:

Proteus mirabilis

]

Contig081G

5892837_f1_6

791

4917

1884

627

1338

1.20E−136

gp:[GI:d1034611:g3721694]

[LN:AB012957] [AC:AB012957]

[GN:ORF22-30] [OR:

Vibrio

cholerae] [SR:

Vibrio cholerae

(strain:)22)DNA] [DE

Vibrio

cholerae genes for o-antigen

synthesis, strain O22,

completecds.] [NT:unknown]

Contig081G

5898425_f2_72

792

4918

729

242

236

7.20E−20

gp:[GI:e1202338g:g2661693]

[GN:SC9B10] [ACAL0090204]

[PN:transcriptional regulator]

[GN:SC9B10.07]

[OR:

Streptomyces coelicolor

]

[DE:

Streptomyces coelicolor

cosmid 9B10.] [NT:SC9B10.07,

probable transcriptional regulator,

len:]

Contig081G

5994003_f1_33

793

4919

1893

630

960

1.90E−95

gp:[GI:g1171128]

[LN:MXU24657] [AC:U24657]

[PN :saframycin Mx1 synthetase B]

[GN:safB] [OR:

Myxococcus

xanthus

] [DE:

Myxococcus

xanthus

saframycin Mx1

synthetase B (safB),

saframycinMx1 synthetase A

(safA), and safC genes, complete

cds.] [NT:contains two putative

amino acid activating]

Contig081G

625092_f2_67

794

4920

1698

565

2193

3.00E−227

sp:[LN:G6PI_ACICA]

[AC:Q59088] [GN:PGI]

[OR:

ACINETOBACTER

CALCOACETICUS

] [EC:5.3.1.9]

[DE:ISOMERASE) (PGI)

(PHOSPHOHEXOSE

ISOMERASE) (PHI)]

[SP:Q59088]

Contig081G

6523267_f1_43

795

4921

396

131

213

2.00E−17

sp:[LN:BOLA_VIBAL]

[AC:Q56585] [GN:BOLA]

[OR:

VIBRIO ALGINOLYTICUS

]

[DE:BOLA PROTEIN

HOMOLOG] [SP:Q56585]

Contig081G

676387_c3_363

796

4922

210

69

NO-HIT

Contig081G

6850665_f3_159

797

4923

294

97

NO-HIT

Contig081G

7234437_c3_331

798

4924

516

171

286

3.60E−25

sp:[LN:ZUR_ECOLI]

[AC:P32692:P76784] [GN:ZUR]

[OR:

ESCHERICHIA COLI

]

[DE:ZINC UPTAKE

REGULATION PROTEIN (ZINC

UPTAKE REGULATOR)]

[SP:P32692:P76784]

Contig081G

820807_c2_251

799

4925

630

209

460

1.30E−43

sp:[LN:BTUE_ECOLI]

[AC:P06610] [GN:BTUE]

[OR:

ESCHERICHIA COLI

]

[DE:VITAMIN B12

TRANSPORT PERIPLASMIC

PROTEIN BTUE] [SP:P06610]

Contig081G

9897566_c1_228

800

4926

246

81

NO-HIT

Contig081G

9959637_c2_275

801

4927

210

69

NO-HIT

Contig081G

9964686_f3_145

802

4928

1467

488

1444

7.00E−148

sp:[LN:CYCA_ECOLI]

[AC:P39312] [GN:CYCA:DAGA]

[OR:

ESCHERICHIA COLI

]

[DE:D-SERINE/D-

ALANINE/GLYCINE

TRANSPORTER] [SP:P39312]

Contig087G

13835782_c3_102

803

4929

312

103

176

1.60E−13

sp:[LN:YOHL_ECOLI]

[AC:P76424] [GN:YOHL]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 10.1 KD

PROTEIN IN THIM-MRP

INTERGENIC REGION]

[SP:P76424]

Contig087G

14218830_f2_19

804

4930

1092

363

230

1.80E−34

pir:[LN:C69612] [AC:C69612]

[PN:cation-efflux system

membrane protein czcD]

[GN:czcD] [CL:zinc transporter

ZnT-2] [OR:

Bacillus subtitis

]

Contig087G

14625832_c1_53

805

4931

192

63

NO-HIT

Contig087G

14647936_c3_85

806

4932

1983

660

2348

1.10E−243

sp:[LN:DNAK_FRATU]

[AC:P48205] [GN:DNAK]

[OR:

FRANCISELLA

TULARENSIS

] [DE:DNAK

PROTEIN (HEAT SHOCK

PROTEIN 70) (HSP70)]

[SP:P48205]

Contig087G

181257_f3_45

807

4933

273

90

100

2.70E−05

gp:[GI:g725475] [LN:PFU07002]

[AC:U07002] [PN:merozoite

surface antigen 2]

[OR:

Plasmodium falciparum

]

[SR:

malaria parasite

]

[DE:

Plasmodium falciparum

WOS

isolate 2 merozoite surface antigen

2gene, partial cds.] [RE:

Contig087G

19562563_c3_86

808

4934

945

314

131

3.90E−08

gp:[GI:g3445522] [LN:AF011391]

[AC:AF011391] [PN:

collagenase-

3] [OR:

Cavia porcellus

]

[SR:domestic guinea pig]

[DE:

Cavia porcellus collagenase

-3

mRNA, partial cds.] [NT:matrix

metalloproteinase] [RE:

Contig087G

1969137_f1_3

809

4935

732

243

251

1.80E−21

gp:[GI:g3135321] [LN:AF057031]

[AC:AF057031] [PN:putative

thiot:disulfide interchange protein]

[GN:dsbC] [OR:

Pseudomonas

aeruginosa

] [DE:

Pseudomonas

aeruginosa

putative thiot:disulfide

interchange proteinprecursor

(dsbC) gene, complete cds.]

[NT:DsbC]

Contig087G

20437882_c2_68

810

4936

927

308

320

9.00E−29

pir:[LN:577670]

[AC:577670:S77669]

[PN:probable transcription

activator ptxR] [GN:ptxR]

[OR:

Pseudomonas aeruginosa

]

Contig087G

21488126_c1_48

811

4937

342

113

NO-HIT

Contig087G

21500392_f2_28

812

4938

897

298

NO-HIT

Contig087G

21589385_f3_39

813

4939

591

196

551

3.00E−53

sp:[LN:PUR6_PSEAE]

[AC:P72157] [GN:PURE]

[OR:

PSEUDOMONAS

AERUGINOSA

] [EC:4.1.1.21]

[DE:(EC 4.1.1.21) (AIR

CARBOXYLASE) (AIRC)]

[SP:P72157]

Contig087G

22359640_c3_96

814

4940

189

62

NO-HIT

Contig087G

23479687_c1_65

815

4941

240

80

101

0.00013

sp:[LN:DNAA_MYCGE]

[AC:P35888:Q49363]

[GN.DNAA:MG469]

[OR:

MYCOPLASMA

GENITALIUM

]

[DE:CHROMOSOMAL

REPLICATION INITIATOR

PROTEIN DNAA]

[SP:P35888:Q49363]

Contig087G

23707687_c3_93

816

4942

1428

475

1338

1.20E−136

sp:[LN:MPL_ECOLI]

[AC:P37773:P76804] [GN:MPL]

[OR:

ESCHERICHIA COLI

]

[EC:63.2.—] [DE:LIGASE.]

[SP:P37773:P76804]

Contig087G

23836713_f2_29

817

4943

1092

363

1465

4.20E−150

pir:[LN:139510]

[AC:139510:S50204]

[PN:carboxylesterase,] [GN:estA]

[CL:probable lipolytic protein

ybaC] [OR:

Acinetobacter

calcoaceticus

] [EC:3.1.1.1]

Contig087G

23996076_c3_101

818

4944

1371

456

1501

6.40E−154

sp:[LN:YGFP_ECOLI]

[AC:P76641:Q46816] [GN:YGFP]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 50.2 KD

PROTEIN IN KDUI-LYSS

INTERGENIC REGION]

[SP:P76641:Q46816]

Contig087G

24009432_f3_30

819

4945

192

63

181

4.80E−14

sp:[LN:RL34_ECOLI]

[AC:P02437]

[GN:RPMH:SSAF:RIMA]

[OR:

ESCHERICHIA COLI

]

[DE:50S RIBOSOMAL PROTEIN

L34] [SP:P02437]

Contig087G

242785_c1_56

820

4946

1029

342

892

2.20E−89

sp:[LN:YGJT_ECOLI]

[AC:P42601] [GN:YGJT]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 35.8 KD

PROTEIN IN EBGC-UXAA

INTERGENIC REGION]

[SP:P42601]

Contig087G

24304177_c1_50

821

4947

204

67

NO-HIT

Contig087G

24313256_c3_95

822

4948

261

86

NO-HIT

Contig087G

24392001_c2_76

823

4949

282

93

138

1.70E−09

sp:fLN:YEAQ_ECOLI]

[AC:P76246] [GN:YEAQ]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 8.7 KD

PROTEIN IN GAPA-RND

INTERGENIC REGION]

[SP:P76246]

Contig087G

24642168_f1_14

824

4950

564

187

675

2.20E−66

sp:fLN:CYPH_ACICA]

[AC:P42693] [GN:ROTA]

[OR:

ACINETOBACTER

CALCOACETICUS

] [EC:5.21.8]

[DE:(ROTAMASE)] [SP:P42693]

Contig087G

26172577_c1_55

825

4951

597

198

369

5.80E−34

gp:[GI:g2460271] [LN:AF020809]

[AC:AF020809] [PN:putative

permease Mig-13] [GN:mig-13]

[OR:

Salmonella typhimurium

]

[DE:

Salmonella typhimurium

multidrug pump Cmr (cmr) gene,

partial cds;putative permease Mig-

13 (mig-13) and transcriptional

activatorDeoR (deoR) genes,

complete cds; and penicillin-

binding protein 6(pbp-6) gene.

partial cds.] [NT:lipoprotein

similar to bacitracin permease

(BcrC)]

Contig087G

26602137_c2_70

826

4952

393

130

NO-HIT

Contig087G

31281286_f1_7

827

4953

1209

402

208

4.00E−14

gp:[GI:g2270983]

[LN:SMU90220] [AC:U90220]

[OR:

Sinorhizobium meliloti

]

[DE:

Sinorhizobium meliloti

SyrB

gene, complete cds.] [NT:orf3]

Contig087G

31306556_f3_31

828

4954

324

107

247

4.90E−21

sp:[LN:YIDD_HAE[N]

[AC:P44972] [GN:HI1000]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL 9.5 KD

PROTEIN IN RNPA 3′REGION]

[SP:P44972]

Contig087G

32454638_f2_27

829

4955

1299

432

445

5.10E−42

gp:[GI:d1029070:g3132253]

[LN:AB010415] [AC:A13010415]

[OR:

Actinobacillus

actinomycetemcomitans

]

[SR:

Actinobacillus

actinomycetemcomitans

(strain:NCTC9710) DNA]

[DE:

Actinobacillus

actinomycetemcomitans

gene

cluster for6-deoxy-L-talan

synthesis, complete cds.]

[NT:ORF5]

Contig087G

33643968_c1_58

830

4956

1095

364

267

3.70E−23

pir:[LN:S75666] [AC:S75666]

[PN:3-chlorobenzoate-3,4-

dioxygenase:protein

sll1869:protein sll1869]

[GN:cbaB] [OR:Synechocystis sp]

[SR:PCC 6803,, PCC 6803]

[SR:PCC 6803,]

Contig087G

34179086_c3_81

831

4957

348

115

111

2.20E−05

gp:[GI:g4050087] [LN:DJ534K4]

[AC:AF109907] [PN:S164]

[OR:Homo sapiens] [DE:Homo

sapiens S164 gene, partial cds; PSI

and hypothetical proteingenes,

complete cds; and S171 gene.

partial cds.] [NT:unknown; intron-

exon boundaries defined by ESTs]

Contig087G

34412812_c3_87

832

4958

1017

338

114

3.30E−06

gp:[GI:g3445522] [LN:AF011391]

[AC:AF011391] [PN:collagenase-

3] [OR:

Cavia porcellus

]

[SR:domestic guinea pig]

[DE:

Cavia porcellus

collagenase-3

mRNA, partial cds.] [NT:matrix

metalloproteinase] [RE:

Contig087G

34619137_c3_97

833

4959

390

129

70

0.00089

sp:[LN:Y930_HAEIN]

[AC:P44077] [GN:H10930]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

H10930] [SP:P44077]

Contig087G

36132665_c3_84

834

4960

606

201

304

4.50E−27

sp:[LN:GRPE_HAEIN]

[AC:P43732] [GN:GRPE:H10071]

[OR:

HAEMOPHILUS

INFLUENZAE

] [DE:GRPE

PROTEIN] [SP:P43732]

Contig087G

36332931_f2_16

835

4961

408

135

215

1.20E−17

sp:[LN:RNPA_HAEIN]

[AC:P44306] [GN:RNPA:H10999]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:3.1.26.5]

[DE:RIBONUCLEASE P

PROTEIN COMPONENT,

(PROTEIN C5) (RNASE P)]

[SP:P44306]

Contig087G

3937551_c2_69

836

4962

306

101

NO-HIT

Contig087G

406716_c2_74

837

4963

1206

401

1010

6.80E−102

sp:[LN:YGIC_HAEIN]

[AC:P44940] [GN:H10929]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

H10929] [SP:P44940]

Contig087G

4095328_f2_18

838

4964

1365

454

1189

7.40E−121

sp:[LN:THDF_ECOLI]

[AC:P25522] [GN:THDF:TRME]

[OR:

ESCHERICHIA COLI

]

[DE:THIOPHENE AND FURAN

OXIDATION PROTEIN THDF]

[SP:P25522]

Contig087G

4422563_c1_60

839

4965

537

178

593

1.10E−57

gp:[GI:g3046326] [LN:AF008931]

[AC:AF008931]

[PN:hypoxanthine

phosphoribosyltransferase]

[GN:hprt] [OR:

Salmonella

typhimurium

] [DE:

Salmonella

typhimurium

hypoxanthine

phosphoribosyltransferase(hprt)

gene, complete cds.]

Contig087G

4475343_c3_106

840

4966

318

105

154

2.70E−10

sp:[LN:DNAA_PROMI]

[AC:P22837] [GN:DNAA]

[OR:

PROTEUS MIRABILIS

]

[DE:CHROMOSOMAL

REPLICATION INITIATOR

PROTEIN DNAA] [SP:P22837]

Contig087G

4891713_f3_40

841

4967

1131

376

763

1.00E−75

sp:[LN:PURK_PSEAE]

[AC:P72158] [GN:PURK]

[OR:

PSEUDOMONAS

AERUGINOSA

] [EC:4.1.1.21]

[DE:(AIR CARBOXYLASE)

(AIRC)] [SP:P72158]

Contig087G

54002_f3_38

842

4968

423

140

NO-HIT

Contig087G

6369078_c1_59

843

4969

183

60

NO-HIT

Contig087G

7312556_f2_17

844

4970

1779

592

987

5.20E−119

sp:[LN:601M_COXBU]

[AC:P45650] [OR:

COXIELLA

BURNETII

] [DE:60 KD INNER-

MEMBRANE PROTEIN]

[SP:P45650]

Contig087G

975161_c2_77

845

4971

249

82

99

0.00016

pir:[LN:JC4831] [AC:JC4831]

[PN:adsorption protein:gIIIp

protein] [GN:III]

[OR:

Xanthomonas campestris

phage phi-Lf]

Contig089G

10009758_c1_213

846

4972

387

128

238

4.40E−20

sp:[LN:YFFB ECOLI]

[AC:P24178] [GN:YFFB]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 13.6 KD

PROTEIN IN ACRD-DAPE

INTERGENIC REGION]

[SP:P24178]

Contig089G

10032932_f2_117

847

4973

3387

1128

276

5.20E−28

gp:[GI:g2920625] [LN:AF044499]

[AC:AF044499] [PN:vgrE protein]

[OR:

Escherichia coli

]

[DE:

Escherichia coli

strain ec50

RhsE accessory genetic element

vgrEprotein, core protein, and

dsORF-c5 genes, complete cds.]

Contig089G

10353950_c2_360

848

4974

1260

419

1304

4.80E−133

pir:[LN:C64923] [AC:C64923]

[PN:chloramphenicol resistance

protein homolog b1657]

[CL:

Streptomyces lividans

chloramphenicol resistance

protein] [OR:

Escherichia coli

]

Contig089G

1055287_f3_153

849

4975

843

280

882

2.50E−88

sp:[LN:DAPB_PSESZ]

[AC:Q52419] [GN:DAPB]

[OR:

PSEUDOMONAS

SYRINGAE

] [EC:1.3.1.26]

[DE:DIHYDRODIPICOLINIATE

REDUCTASE,] [SP:Q52419]

Contig089G

10674042_c2_366

850

4976

255

84

NO-HIT

Contig089G

10744032_f1_15

851

4977

906

301

639

1.40E−62

sp:[LN:YAFC_ECOLI]

[AC:P30864] [GN:YAFC]

[OR:

ESCHERICHIA COLI

]

[DE:(ORF304)] [SP:P30864]

Contig089G

10968887_f2_83

852

4978

465

154

406

6.90E−38

gp:[GI:g3128302] [LN:AF010496]

[AC:AF010496] [PN:hypothetical

protein] [OR:

Rhodobacter

capsulatus

] [DE:

Rhodobacter

capsulatus

strain SB 1003, partial

genome.]

Contig089G

11751528_f1_6

853

4979

1920

639

2306

3.20E−239

pir:[LN:DWECDA]

[AC:A27310:D26570:S48894:S30

669:F65180] [PN:dihydroxy-acid

dehydratase,] [GN:ilvD]

[CL:dihydroxy-acid dehydratase]

[OR:

Escherichia coli

] [EC:4.2.1.9]

[MP:85 min]

Contig089G

11908467_f2_110

854

4980

1209

402

140

1.70E−06

pir:[LN:B70543] [AC:B70543]

[PN:hypothetical protein Rv1592c]

[GN:Rv1592c]

[OR:

Mycobacterium tuberculosis

]

Contig089G

1267581_c2_307

855

4981

537

178

345

2.00E−31

sp:[LN:YBBT_ECOLI]

[AC:P77731]

[GN.:YBBT:GLXA2]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 18.2 KD

PROTEIN IN RHSD-GCL

INTERGENIC REGION]

[SP:P77731]

Contig089G

12925076_c3_438

856

4982

1041

346

733

1.50E−72

sp:[LN:MUTY_ECOLI]

[AC:P17802] [GN:MUTY:MICA]

[OR:

ESCHERICHIA COLI

]

[EC:3.2.2.—] [DE:AIG-SPECIFIC

ADENINE GLYCOSYLASE,]

[SP:P17802]

Contig089G

12930212_c1_251

857

4983

1128

375

992

5.50E−100

sp;[LN:GCH2_PHOLE]

[AC:Q02008] [GN:RIBA]

[OR:PHOTOBACTERIUM

LEIOGNATHI] [EC:3.5.4.25]

[DE:PHOSPHATE SYNTHASE

(DHBP SYNTHASE)]

[SP:Q02008]

Contig089G

12991693_f2_75

858

4984

1128

375

1189

7.40E−121

gp:[GI:g1389759]

[LN:STU58360] [AC:U58360]

[PN:DnaJ] [GN:dnaJ]

[OR:

Salmonella typhimurium

]

[SR:

Salmonella typhimurium

strain=LT2] [DE:

Salmonella

typhimurium

plasmid pRS1014

DnaK and DnaJ genes,complete

cds.]

Contig089G

13710942_f3_191

859

4985

1947

648

2238

5.10E−232

gp:[GI:d1038142:g4176381]

[LN:AB003429] [AC:A13003429]

[PN:topoisomerase IV subunit]

[GN:parE] [OR:

Pseudomonas

aeruginosa

] [SR:

Pseudomonas

aeruginosa

DNA]

[DE:

Pseudomonas aeruginosa

DNA for topoisomcrase IV

subunit, completecds.]

Contig089G

13909652_f3_154

860

4986

705

234

111

0.00019

sp:[LN:PPCT_BOVIN]

[AC:P02720] [GN:PCTP]

[OR:BOS TAURUS]

[DE:PHOSPHATIDYLCHOLINE

TRANSFER PROTEIN (PC-TP)]

[SP:P02720]

Contig089G

14242167_f3_173

861

4987

1074

357

406

6.90E−38

sp:[LN:HUFG_KLEAE]

[AC:P19452] [GN:HUTG]

[OR:

KLEBSIELLA

AEROGENES

] [EC:3.5.3.8]

[DE:(HISTIDINE UTILIZATION

PROTEIN G) (FRAGMENT)]

[SP:P19452]

Contig089G

14487542_c1_270

862

4988

1077

357

1114

6.50E−113

pir:[LN:556495]

[AC:S56495:H65239]

[PN:probable zinc-containing

dehydrogenase,:yjgB protein]

[GN:yjgB] [CL:alcohol

dehydrogenase:long-chain alcohol

dehydrogenase homology]

[OR:

Escherichia coli

] [EC:1.—.—.—]

Contig089G

14564213_c1_269

863

4989

375

124

201

3.70E−16

pir:[LN:D71092] [AC:D71092]

[PN:hypothetical protein PH1001]

[GN:PH1001] [CL:histidine triad

homology] [OR:

Pyrococcus

horikoshii

]

Contig089G

1464837_f1_68

864

4990

209

70

NO-HIT

Contig089G

14734692_c1_268

865

4991

189

62

NO-HIT

Contig089G

15804142_f3_184

866

4992

885

294

612

1.00E−59

pir:[LN:D70953] [AC:D70953]

[PN:hypothetical protein Rv1245c]

[GN:Rv1245c]

[OR:

Mycobacterium tuberculosis

]

Contig089G

16801303_c2_318

867

4993

729

242

163

3.90E−12

pir:[LN:A70811[AC:A708111

[PN:hypothetical protein Rv0825c]

[GN:Rv0825c]

[OR:

Mycobacterium tuberculosis

]

Contig089G

16828765_c3_412

868

4994

924

307

642

6.80E−63

gp:[GI:d1022634:g2329840]

[LN:D17333] [AC:D17333]

[PN:thiamine-monophosphate

kinase] [GN:thiL] [OR:

Escherichia

coli

] [SR:

Escherichia coli

(strain:K

12) DNA. clone_lib:Clarke-Carbon

gen] [EC:2.7.4.16] [DE:

E. Coli

thiL gene, complete cds.]

Contig089G

182157_f2_97

869

4995

636

211

268

2.90E−23

pir:[LN:JC5587]

[AC:JC5587:PC4481]

[PN:glutamate racemase,]

[GN:murl] [CL:glutamate

racemase] [OR:

Bacillus pumilus

]

[EC:5.1.1.3]

Contig089G

19538877_c3_404

870

4996

819

272

768

3.00E−76

sp:[LN:PHOB_PSEAE]

[AC:P23620] [GN:PHOB]

[OR:

PSEUDOMONAS

AERUGINOSA

]

[DE:PHOSPHATE REGULON

TRANSCRIPTIONAL

REGULATORY PROTEIN

PHOB] [SP:P23620]

Contig089G

19704405_f1_45

871

4997

879

292

595

6.50E−58

sp:[LN:DPSD_ECOLI]

[AC:P10740] [GN:PSD]

[OR:

ESCHERICHIA COLI

]

[EC:4.1.1.65]

[DE:PHOSPHATIDYLSERINE

DECARBOXYLASE

PROENZYME,] [SP:P10740]

Contig089G

20115777_f2_120

872

4998

354

117

NO-HIT

Contig089G

20391317_c2_304

873

4999

1059

352

705

1.40E−69

gp:[GI:e325402:g2239196]

[LN:SPACI9G12] [AC:Z97209]

[PN:hypothetical protein]

[GN:SPACI9G12.03]

[OR:

Schizosaccharomyces pombe]

[SR:fission yeast] [DE:

S.pombe

chromosome 1 cosmid c19G12.]

[NT:SPAC19G12.03, unknown,

len:32]

Contig089G

20507967_f1_56

874

5000

594

197

271

1.40E−23

sp:[LN:YQIA_ECOLI]

[AC:P36653] [GN:YQIA]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 21.6 KD

PROTEIN IN PARE-ICC

INTERGENIC REGION (F193)]

[SP:P36653]

Contig089G

20522812_f3_174

875

5001

687

228

337

1.40E−30

gp:[GI:g2687606] [LN:AF034854]

[AC:AF034854] [GN:virP]

[OR:

Agrobacterium tumefaciens

]

[DE:

Agrobacterium tumefaciens

plasmid pTiA6NC (virO),

phosphoglycolatephosphatase

homolog (virP), (virQ), (virR),

ORF3 transposasehomolog, and

ORF4 transposase homolog genes,

complete cds.] [NT:similar to

phosphoglycolate phosphatase]

Contig089G

20585826_c1_290

876

5002

747

248

NO-HIT

Contig089G

2150263_f1_150

877

5003

1104

367

271

1.40E−23

pir:[LN:A70361] [AC:A70361]

[PN:acriflavin resistance protein

AcrE] [GN:acrE] [OR:Aquifex

aeolicus]

Contig089G

21572167_c3_411

878

5004

453

150

308

1.70E−27

sp:[LN:NUSB_ECOLI]

[AC:P04381] [GN:NUSB:SSYB]

[OR:

ESCHERICHIA COLI

]

[DE:N UTILIZATION

SUBSTANCE PROTEIN B

(NUSB PROTEIN)] [SP:P04381]

Contig089G

21679702_c3_391

879

5005

1053

350

649

1.20E−63

sp:[LN:ALC_YEAST]

[AC:P25335]

[GN:DAL2:ALC1:YIR029W]

[OR:

SACCHAROMYCES

CEREVISIAE

] [SR:,BAKER'S

YEAST] [EC:3.5.3.4]

[DE:ALLANTOICASE,]

[SP:P25335]

Contig089G

21876628_f2_78

880

5006

1497

498

660

8.40E−65

gp:[GI:e1331956:g4106587]

[LN:YP102KB] [AC:AL031866]

[OR:

Yersinia pestis

] [DE:

Yersinia

pestis

102 kbases unstable region:

from 1 to 119443.] [NT:ORF19,

len: 473, similar to tyrosine]

Contig089G

22003802_c2_317

881

5007

1410

469

1052

2.40E−106

pir:[LN:A69905] [AC:A69905]

[PN:conserved hypothetical

protein yoeA] [GN:yoeA]

[OR:

Bacillus subtilis

]

Contig089G

22114142_f3_203

882

5008

210

69

104

5.70E−05

sp:[LN:FTSZ_ENTHR]

[AC:008458] [GN:FTSZ]

[OR:

ENTEROCOCCUS HIRAE

]

[DE:CELL DIVISION PROTEIN

FTSZ] [SP:008458]

Contig089G

2214050_f2_121

883

5009

840

279

592

1.30E−57

pir:[LN:E70027] [AC:E70027]

[PN :3-oxoacyl-acyl-carrier protein

reductase homolog yvaG]

[GN:yvaG] [CL:ribitol

dehydrogenase:short-chain alcohol

dehydrogenase homology]

[OR:

Bacillus subtilis

]

Contig089G

22304768_f3_151

884

5010

390

129

NO-HIT

Contig089G

23438506_c2_369

885

5011

183

60

NO-HIT

Contig089G

23445402_c2_352

886

5012

765

254

301

9.30E−27

gp:[GI:g746513] [LN:CELD1022]

[AC:U23517] [PN:D1022.4]

[GN:D1022.4] [OR:

Caenorhabditis

elegans

] [SR:

Caenorhabditis

elegans

strain=Bristol N2]

[DE:

Caenorhabditis elegans

cosmid D1022.]

Contig089G

234750_c1_282

887

5013

717

238

132

3.30E−07

pir:[LN:F69105] [AC:F69105]

[PN:conserved hypothetical

protein MTH1787]

[GN:MTH1787]

[OR:

Methanobacterium

thenmoautotrophicum

]

Contig089G

23479562_f1_12

888

5014

237

78

NO-HIT

Contig089G

23845308_c2_305

889

5015

576

191

163

3.90E−12

gp:[GI:e1388169:g4455754]

[LN:SC2G5] [AC:AL035478]

[PN:hypothetical protein

SC2G5.30] [GN:SC2G5.30]

[OR:

Streptomyces coelicolor

]

[DE:

Streptomyces coelicolor

cosmid 2G5] [NT:SC2G5.30,

unknown, len: 19; limited

similarity]

Contig089G

23854640_f1_35

890

5016

1704

567

2706

1.30E−281

gp:[GI:g409365]

[LN:PSEHUTUU]

[AC:M33923:M28362]

[PN:urocanase] [GN:hutU]

[OR:

Pseudomonas putida

]

[SR:

Pseudomonas putida

(library:

ATCC 12633) DNA]

[DE:

Pseudomonas putida

urocanase (hutU) gene, complete

cds.]

Contig089G

23864051_c1_272

891

5017

906

301

903

1.50E−90

pir:[LN:A64745]

[AC:A64745:158331:JS0715]

[PN:yafB protein] [GN:yafB]

[CL:aldehyde reductase]

[OR:

Escherichia coli

] [MP:5.2

min]

Contig089G

23875442_c1_239

892

5018

555

184

NO-HIT

Contig089G

24001555_c3_410

893

5019

501

166

476

2.60E−45

sp:[LN:RISB_HAEIN]

[AC:P45149] [GN:RIBH:HI1303]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:2.5.1.9]

[DE:(LUMAZINE SYNTHASE)

(RIBOFLAVIN SYNTHASE

BETA CHAIN)] [SP:P45149]

Contig089G

24226452_c3_390

894

5020

726

241

148

1.10E−08

sp:[LN:OMPK_VIBPA]

[AC:P51002] [GN:OMPK]

[OR:

VIBRIO

PARAHAEMOLYTICUS

]

[DE:OUTER MEMBRANE

PROTEIN OMPK PRECURSOR]

[SP:P51002]

Contig089G

2424187_c2_347

895

5021

732

243

808

1.70E−80

sp:[LN:PUR7_ECOLI]

[AC:P21155] [GN:PURC]

[OR:

ESCHERICHIA COLI

]

[EC:6.3.2.6] [DE:(SAICAR

SYNTHETASE)] [SP:P21155]

Contig089G

24313518_c2_300

896

5022

861

286

527

1.00E−50

gp:[GI:g1079662]

[LN:PAU38241]

[AC:U38241:L12038]

[PN:catabolite repression control

protein] [GN:crc]

[OR:

Pseudomonas aeruginosa

]

[SR:

Pseudomonas aeruginosa

strain=PAOI] [DE:

Pseudomonas

aeruginosa

orotate phophoribosyl

transferase (pyrE),catabolite

repression control protein (crc) and

RNasePH (rph)genes, complete

cds.]

Contig089G

24313755_f1_64

897

5023

1479

492

1542

2.90E−158

sp:[LN:MURC_ECOLI]

[AC:P17952:007099]

[GN:MURC] [OR:

ESCHERICHIA

COLI

] [EC:6.3.2.8]

[DE:ACETYLMURANOYL-L-

ALANINE SYNTHETASE)]

[SP:P17952:007099]

Contig089G

24398387_f2_139

898

5024

969

322

780

1.60E−77

sp:[LN:DDL_HAEIN]

[AC:P44405] [GN:DDLB:HI1140]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:6.3.24]

[DE:D-ALANINE--D-ALANINE

LIGASE, (D-ALANYLALANINE

SYNTHETASE)] [SP:P44405]

Contig089G

24412812_f3_181

899

5025

183

60

NO-HIT

Contig089G

24490943_c2_375

900

5026

291

96

NO-HIT

Contig089G

24500250_f1_33

901

5027

1431

476

1575

9.20E−162

pir:[LN:QRECAA]

[AC:H64733:JS0447:S10720:S451

91] ]PN:aromatic amino acid

transport protein aroP] [GN:aroP]

[CL:arginine permease]

[OR:

Escherichia coli] [MP:2.6

min]

Contig089G

24643827_f1_44

902

5028

486

161

NO-HIT

Contig089G

24646013_f3_163

903

5029

651

216

375

1.30E−34

sp:[LN:YDJB_ECOLI]

[AC:P21369:P76229:P76910]

[GN:YDJB] [OR:

ESCHERICHIA

COLI] ]DE:HYPOTHETICAL

23.4 KD PROTEIN IN ANSA-

GAPA INTERGEIC REGION]

[SP:P21369:P76229:P76910]

Contig089G

24844575_c2_326

904

5030

1308

435

NO-HIT

Contig089G

2537943_c2_349

905

6031

852

283

477

2.10E−45

sp:[LN:YFDC_ECOLI]

[AC:P37327] [GN:YFDC]

[OR:

ESCHERICHIA COLI]

[DE:HYPOTHETICAL 34.5 KD

PROTEIN IN VACJ-ARGW

INTERGENIC REGION]

[SP:P37327]

Contig089G

25431530_f2_93

906

5032

579

192

368

7.40E−34

sp:[LN:YHUT_PSEPU]

[AC:P24696]

[OR:

PSEUDOMONAS PUTIDA

]

[DE:HYPOTHETICAL 21.2 KD

PROTEIN IN HUTC 3′REGION]

[SP:P24696]

Contig089G

25601562_c3_442

907

5033

378

125

NO-HIT

Contig089G

25630385_c2_353

908

5034

561

186

225

1.40E−18

pir:[LN:D70015] [AC:D70015]

[PN:hypothetical protein yunA]

[GN:yunA] [OR:

Bacillus subtilis]

Contig089G

25665953_f1_66

909

5035

1266

421

543

2.10E−52

sp:[LN:FTSA_ECOLI]

[AC:P06137:Q47229]

[GN:FTSA:DIVA]

[OR:

ESCHERICHIA COLI

]

[DE:CELL DIVISION PROTEIN

FTSA] [SP:P06137:Q47229]

Contig089G

25900407_f2_137

910

5036

1101

366

793

6.80E−79

sp:[LN:MURG_HAEIN]

[AC:P45065]

[GN:MURG:HI1138]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:2.4.1.—]

[DE:(EC 2.4.1.—)] [SP:P45065]

Contig089G

26210288_f3_161

911

5037

1308

435

922

1.40E−92

sp:[LN:YCAJ_HAEIN]

[AC:P45262] [GN:HI1590]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

HI1590] [SP:P45262]

Contig089G

26375327_c1_262

912

5038

780

259

213

2.00E−17

gp [GI:g3378263] [LN:AF079317]

[AC:AF079317] [PN:regulator]

[GN:orf007] [OR:

Sphingomonas

aromaticivorans

]

[DE:

Sphingomonas

aromaticivorans

plasmid pNL1,

complete plasmidsequence.]

[NT:similar to

R. opacus

CatR

putative regulator of]

Contig089G

26379755_c2_302

913

5039

1236

411

320

1.60E−32

pir:[LN:H70302] [AC:H70302]

[PN:conserved hypothetical

protein aq_35] [GN:aq_035]

[OR:

Aquifex aeolicus

]

Contig089G

26757712_f3_160

914

5040

1191

396

574

1.10E−55

sp:[LN:YIHZ_ECOLI]

[AC:P75804] [GN:YLII]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 41.1 KD

PROTEIN IN MOEA-DACC

INTERGENIC REGION

PRECURSOR] [SP:P75804]

Contig089G

275317_f1_54

915

5041

402

133

NO-HIT

Contig089G

29298767_f3_179

916

5042

408

135

NO-HIT

Contig089G

2932700_c3_408

917

5043

465

154

396

7.90E−37

sp:[LN:YIHZ_ECOLI]

[AC:P32147] [GN:YIHZ]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 15.9 KD

PROTEIN IN RBN-FDHE

INTERGENIC REGION (O145)]

[SP:P32147]

Contig089G

293_f2_87

918

5044

1356

451

435

5.80E−41

sp:[LN:YDHE_HAEIN]

[AC:P45272] [GN:HI1612]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

HI1612] [SP:P45272]

Contig089G

2992215_f2_132

919

5045

744

247

624

5.50E−61

sp:[LN:PYRE_ECOLI]

[AC:P00495] [GN:PYRE]

[OR:

ESCHERICHIA COLI

]

[EC:2.4.2.10] [DE:OROTATE

PHOSPHORIBOSYLTRANSFER

ASE, (OPRT)(OPRTASE)]

[SP:P00495]

Contig089G

29938433_c1_220

920

5046

372

123

230

3.10E−19

gp:[GI:g3511128] [LN:AF060858]

[AC:AF060858] [PN:unknown]

[OR:

Salmonella dublin

]

[DE:

Salmonella dublin

regulatory

protein CopR (copR), histidine

kinase(copS), SPI-4 pathogenicity

island containing dipeptidase

homolog(pipD), SopB (sopB),

PipC (pipC), PipB (pipB), and

PipA (pipA)genes, complete cds;

and tRNA-Ser gene, complete

sequence; andunknown genes.]

[NT:ORF3]

Contig089G

29956561_f2_95

921

5047

1257

418

1298

2.10E−132

gp:[GI:e1331945:g4106576]

[LN:YP102KB] [AC:AL031866]

[GN:hutl] [OR:

Yersinia pestis

]

[DE:

Yersinia pestis

102 kbases

unstable region: from 1 to

119443.] [NT:ORF9, len:406, hutl,

highly similar to imidazolone]

Contig089G

30265917_c3_452

922

5048

1365

454

800

1.20E−79

sp:[LN:SUN_ECOLI]

[AC:P36929:P23866]

[GN:SUN:FMU:FMV:RSMB]

[OR:

ESCHERICHIA COLI

]

[DE:SUN PROTEIN (FMU

PROTEIN)] [SP:P36929:P23866]

Contig089G

30270958_f1_51

923

5049

1590

529

887

7.40E−89

pir:[LN:SYECEC]

[AC:A65049:A24136]

[PN:glutamate--cysteine

ligase,:gamma-glutamylcysteine

synthetase] [GN:gshA (gshI)]

[CL:glutamate--cysteine ligase]

[OR:

Escherichia coli

] [EC:6.3.2.2]

[MP:58 min]

Contig089G

30272213_f2_119

924

5050

789

262

92

0.00053

gp:[GI:g3986497] [LN:AF091806]

[AC:AF091806] [PN:M protein]

[GN:emm] [OR:

Streptococcus

pyogenes

] [DE:

Streptococcus

pyogenes strain cmuk16 M protein

(emm) gene, partialcds.] [RE:

Contig089G

31440668_c1_288

925

5051

1017

338

830

8.10E−83

sp:[LN:FMT_ECOLI]

[AC:P23882] [GN:FMT]

[OR:

ESCHERICHIA COLI

]

[EC:2.1.2.9] [DE:METHIONYL-

TRNA

FORMYLTRANSFERASE,]

[SP:P23882]

Contig089G

32952_f2_89

926

5052

1056

351

1331

6.60E−136

sp:[LN:HPPD_PSESP]

[AC:P80064]

[OR:PSEUDOMONAS SP]

[EC:1.13.11.27] [DE:4-

HYDROXYPHENYLPYRUVATE

DIOXYGENASE, (4HPPD)

(HPD)] [SP:P80064]

Contig089G

33255260_c2_372

927

5053

183

60

NO-HIT

Contig089G

33392325_f2_128

928

5054

780

259

NO-HIT

Contig089G

33409701_c3_426

929

5055

1170

389

205

1.50E−13

gp:[GI:e1347586:g3878032]

[LN:CEH12119] [AC:Z98851]

[GN:H12119.5b]

[OR:

Caenorhabditis elegans

]

[DE:

Caenorhabditis elegans

cosmid H12119, complete

sequence.]

Contig089G

33724166_c2_343

930

1056

600

199

128

2.00E−08

gp:[GI:g727361] [LN:NDU22355]

[AC:U22355] [PN:2,3-

dihydroxybiphenyl dioxygenase]

[OR:naphthalenesulfonate-

degrading bacterium BN6]

[SR:Naphthalenesulfonate-

degrading bacterium BN6]

[DE:Naphthalenesulfonate

degrading bacterium BN6 2,3-

dihydroxybiphenyldioxygenase

(bphC) gene, complete cds.]

Contig089G

33789077_f1_38

931

5057

1827

608

120

1.20E−12

gp:[GI:e1169573:g2584793]

[LN:MHP120GEN] [AC:Y13476]

[PN:P120′ protein] [GN:p120′]

[OR:

Mycoplasma hominis

]

[DE:

Mycoplasma hominis

p120′

gene.]

Contig089G

33838187_f2_74

932

5058

3162

1053

461

4.20E−80

pir:[LN:F71727] [AC:F71727]

[PN:acriflavin resistance protein D

(acrD) RP170] [GN:acrD:RP170]

[OR:

Rickettsia prowazekii

]

Contig089G

33867127_f3_197

933

5059

501

166

NO-HIT

Contig089G

33867293_f1_41

934

5060

219

72

NO-HIT

Contig089G

34265767_f3_200

935

5061

468

155

588

3.60E−57

gp:[GI:g1209222] [LN:ACCEST]

[AC:L38252] [OR:

Acinetobacter

lwoffii

] [DE:

Acinetobacter lwoffii

orf1 and esterase (est) genes,

complete cds.] [NT:orf1]

Contig089G

34381287_c2_342

936

5062

1383

460

1243

1.40E−126

sp:[LN:FAAA_HUMAN]

[AC:P16930] [GN:FAH]

[OR:HOMO SAPIENS]

[EC:3.7.1.2] [DE:(BETA-

DIKETONASE) (FAA))

[SP:P16930]

Contig089G

34414052_f3_187

937

5063

534

177

300

1.20E−26

sp:[LN:YA21_PSEAE]

[AC:P21482]

[OR:

PSEUDOMONAS

AERUGINOSA

]

[DE:HYPOTHETICAL 17.8 KD

PROTEIN IN ALGR2 5′REGION]

[SP:P21482]

Contig089G

35192183_f1_65

938

5064

882

293

223

1.70E−18

sp:[LN:FTSQ_ECOLI]

[AC:P06136] [GN:FTSQ]

[OR:

ESCHERICHIA COLI

]

[DE:CELL DIVISION PROTEIN

FTSQ] [SP:P06136]

Contig089G

35391886_f3_170

939

5065

1326

441

722

1.10E−110

gp:[GI:g4139234] [LN:AF110185]

[AC:AF110185] [PN:unknown]

[OR:

Burkholderia pseudomallei

]

[DE:

Burkholderia pseudomallei

strain 1026b DbhB (dbhB),

generalsecretory pathway protein

D (gspD), general secretory

pathwayprotein E (gspE), general

secretory pathway protein F

(gspF), GspC(gspC), general

secretory pathway protein G

(gspG), generalsecretory pathway

protein H (gspH), general secretory

pathwayprotein I (gspI), general

secretory pathway protein ]

(gspJ),general secretory pathway

protein K (gspK), general

secretorypathway protein L (gspL),

general secretory pathway protein

M(gspM), and general secretory

pathway protein N (gspN)

genes,complete cds; and unknown

genes.] [NT:similar to

Bacillus

subtilis

YciC and Pseudomonas]

Contig089G

35400262_c2_330

940

5066

1842

613

1797

2.70E−185

pir:[LN:D64067] [AC:D64067]

[PN:glutamine--fructose-6-

phosphate transaminase

(isomerizing),] [CL:glutamine--

fructose-6-phosphate

aminotransferase (isomerizing)]

[OR:

Haemophilus influenzae

]

[EC:2.6.1.16]

Contig089G

35721027_c3_381

941

5067

216

71

NO-HIT

Contig089G

36516267_c3_432

942

5068

495

164

439

2.20E−41

pir:[LN:F69744] [AC:F69744]

[PN:hypothetical protein ybbK]

[GN:ybbK] [OR:

Bacillus subtilis

]

Contig089G

36570266_c3_397

943

5069

1362

453

NO-HIT

Contig089G

3907508_c3_448

944

5070

1305

434

1453

7.80E−149

sp:[LN:YCDG_ECOLI]

[AC:P75892] [GN:YCDG]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 48.1 KD

PROTEIN IN WRBA-PUTA

INTERGENIC REGION]

[SP:P75892]

Contig089G

3907688_c2_354

945

5071

255

84

NO-HIT

Contig089G

3912762_f2_92

946

5072

693

230

NO-HIT

Contig089G

3913175_c2_299

947

5073

2232

743

541

1.20E−50

pir:[LN:S74447] [AC:S74447]

[PN:ferrichrome-iron receptor

1:protein sll1409:protein sll1409]

[GN:fhuA_1] [CL:ferrichrome-

iron receptor 1:tonB-dependent

receptor amino-terminal

homology:tonB-dependent

receptor carboxyl-terminal

homology] [OR:Synechocystis sp.]

[SR:PCC 6803,, PCC 6803]

[SR:PCC 6803,]

Contig089G

3913963_c1_267

948

5074

615

204

NO-HIT

Contig089G

3914056_c3_405

949

5075

1368

455

734

1.20E−72

gp:[GI:g3282775] [LN:AF043352]

[AC:AF043352] [PN:histidine

protein kinase PhoR] [GN:phoR]

[OR:

Vibrio cholerae

] [DE:

Vibrio

cholerae

response regulator

homolog PhoB (phoB)

andhistidine protein kinase PhoR

(phoR) genes, complete cds.]

Contig089G

3953178_f3_172

950

5076

762

253

783

7.80E−78

sp:[LN:HUTC_PSEPU]

[AC:P22773] [GN:HUTC]

[OR:

PSEUDOMONAS PUTIDA

]

[DE:HISTIDINE UTILIZATION

REPRESSOR] [SP:P22773]

Contig089G

3955213_f3_194

951

5077

1167

388

421

1.80E−39

gp:[GI:g2290996] [LN:AF006000]

[AC:AF006000] [PN:unknown]

[OR:

Bordetella pertussis

]

[DE:

Bordetella pertussis

D-3-

phosphoglycerate dehydrogenase

homolog(serA) and Brg1 (brg1)

genes, complete cds.] [NT:orf4;

similar to salicylate hydroxylase]

Contig089G

3995388_c2_348

952

5078

213

70

NO-HIT

Contig089G

4025055_f2_107

953

5079

1224

407

833

3.90E−83

sp:[LN:PNCB_ECOLI]

[AC:P18133] [GN:PNCB]

[OR:

ESCHERICHIA COLI

]

[EC:2.4.2.11] [DE:NICOTINATE

PHOSPHORIBOSYLTRANSFER

ASE, (NAPRTASE)] [SP:P18133]

Contig089G

40626_c3_430

954

5080

666

221

457

2.70E−43

gp:[GI:g4220435] [LN:AF036940]

[AC:AF036940:AF081362]

[PN:similar to glutathione-s-

transferase] [GN:nagL]

[OR:Pseudomonas sp. U2]

[DE:Pseudomonas sp. U2 plasmid

pWWU2, ferredoxin reductase

(nagAa),salicylate-5-hydroxylase

large oxygenase component

(nagG),salicylate-5-hydroxylase

small oxygenase component

(nagH),ferredoxin (nagAb),

naphthaiene dioxygenase large

oxygenasecomponent (nagAc),

naphthalene dioxygenase small

oxygenasecomponent (nagAd), cis-

naphthalene dihydrodiol

dehydrogenase(nagB),

salicylaldehyde dehydrogenase

(nagF),1,2-dihydroxynaphthalene

dioxygenase (nagC), putative

aldolase(nagQ), hydrolaselaldolase

(nagE), 2-hydroxychromene

carboxylateisomerase (nagD),

similar to glutathione S-transferase

(nagJ).gentisate 1,2-dioxygenase

(nagI), putative isomerase-

decarboxylase(nagK), and similar

to glutathione-s-transferase (nagL)

genes,complete cds; and NagM

(nagM) gene, partial cds.]

[NT:GSTII]

Contig089G

4064077_f1_39

955

5081

336

111

NO-HIT

Contig089G

4098463_c1_242

956

5082

1164

387

930

2.10E−93

sp:[LN:YBDL_ECOLI]

[AC:P77806] [GN:YBDL]

[OR:

ESCHERICHIA COLI

]

[EC:2.6.1.—]

[DE:HYPOTHETICAL

AMINOTRANSFERASE YBDL,]

[SP:P77806]

Contig089G

4101588_c1_221

957

5083

1377

458

813

5.10E−81

sp:[LN:YUNK_BACSU]

[AC:O32140] [GN:YUNK]

[OR:

BACILLUS SUBTILIS

]

[DE:HYPOTHETICAL 44.9 KD

PROTEIN IN HOM-MRGA

INTERGENIC REGION]

[SP:O32140]

Contig089G

4161013_c1_241

958

5084

1320

439

442

1.10E−41

sp:[LN:YJIN_ECOLI]

[AC:P39385] [GN:YJIN]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 48.2 KD

PROTEIN IN IADA-MCRD

INTERGENIC REGION (F426)]

[SP:P39385]

Contig089G

4304517_f2_106

959

5085

1233

410

648

1.60E−63

pir:[LN:E70860] [AC:E70860]

[PN:probable serB2 protein]

[PN:serB2] [OR:

Mycobacterium

tuberculosis

]

Contig089G

4353463_f2_127

960

5086

555

184

117

0.0002

sp:[LN:YIL2_YEAST]

[AC:P40480] [6N:YIL112W]

[OR:

SACCHAROMYCES

CEREVISIAE

] [SR:,BAKER'S

YEAST] [DE:HYPOTHETICAL

123.6 KD PROTEIN IN POR2-

COX5B INTERGENIC REGION]

[SP:P40480]

Contig089G

4412937_f2_108

961

5087

1164

287

460

1.30E−43

sp:[LN:THTR_AZOVI]

[AC:P52197] [GN:RHDA]

[OR:

AZOTOBACTER

VINELANDII

] [EC:2.8.1.1]

[DE:THIOSULFATE

SULFURTRANSFERASE,

(RHODANESE-LIKE PROTEIN)]

[SP:P52197]

Contig089G

4471037_f2_94

962

5088

1470

489

1711

3.60E−176

gp:[61:g2642339] [LN:AF032970]

[AC:AF032970] [PN:inducible

histidine transporter] [GN:hutT]

[OR:

Pseudomonas putida

]

[DE:

Pseudomonas putida

inducible

histidine transporter

(hutT),imidazolone propionate

hydrolase (hutI), and N-

formylglutamateamidohydrolase

(hutG) genes, complete cds; and

prolineiminopeptidase (pipI) gene,

partial cds.]

Contig089G

4484380_f1_3

963

5089

1500

499

1233

1.60E−125

sp:[LN:Y736_HAEIN]

[AC:P44849] [GN:HI0736]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL SODIUM-

DEPENDENT TRANSPORTER

H10736] [SP:P44849]

Contig089G

4488563_f1_36

964

5090

1548

515

2053

2.00E−212

sp:[LN:HUTH_PSEPU]

[AC:P21310] [GN:HUTH]

[OR:

PSEUDOMONAS PUTIDA

]

[EC:4.3.1.3] [DE:HISTIDINE

AMMONIA-LYASE,

(HISTIDASE)] [SP:P21310]

Contig089G

4571876_c1_252

965

5091

555

184

373

2.20E−34

sp:[LN:PGPA_ECOLI]

[AC:P18200:P77321] [GN:PGPA]

[OR:

ESCHERICHIA COLI

]

[EC:3.1.3.27]

[DE:PHOSPHATIDYLGLYCERO

PHOSPHATASE A,]

[SP:P18200:P77321]

Contig089G

4722305_c1_266

966

5092

1026

341

790

1.40E−78

sp:[LN:DAPA_HAEIN]

[AC:P43797] [GN:DAPA:H10255]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:4.2.1.52]

[DE:DIHYDRODIPICOLINATE

SYNTHASE, (DHDPS)]

[SP:P43797]

Contig089G

4772183_c1_265

967

5093

330

109

NO-HIT

Contig089G

4884593_f1_53

968

5094

2157

718

119

3.00E−06

gp:[GI:g1196687] [LN:P29G16A]

[AC:M14431] [OR:Bacteriophage

phi-29] [SR:Bacteriophage phi-29

(clone:.) DNA]

[DE:Bacteriophage phi-29 gene-16

gene. complete cds.] [NT:pre gene-

16 ORF protein; putative]

Contig089G

4900258_c3_439

969

5095

408

135

NO-HIT

Contig089G

5084425_f3_199

970

5096

1824

607

654

1.30E−80

pir:[LN:S56364]

[AC:S56364:141028:141037:S4206

4:F65223:S57220:S47295]

[PN:inner membrane copper

tolerance protein

cycZ:thiol:disulfide interchange

protein dsbd]

[GN:dsbD:cycZ:CutA2:dipZ]

[OR:

Escherichia coli

]

Contig089G

5110178_f1_2

971

5097

606

201

245

8.00E−21

sp:[LN:GSTA_RHILE]

[AC:Q52828] [GN:GSTA]

[OR:

RHIZOBIUM

LEGUMINOSARUM

] [DE:GSTA

PROTEIN] [SP:Q52828]

Contig089G

5269637_c2_355

972

5098

591

196

511

5.20E−49

sp:[LN:3MGA_HAEIN]

[AC:P44321] [GN:TAG:H10654]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:3.2.2.20]

[DE:GLYCOSYLASE) (TAG)]

[SP:P44321]

Contig089G

5272092_c2_298

973

5099

222

73

NO-HIT

Contig089G

603165_f3_164

974

5100

978

325

946

4.10E−95

pir:[LN:E69902] [AC:E69902]

[PN:sodium-dependent transporter

homolog yocS] [GN:yocS]

[OR:

Bacillus subtilis

]

Contig089G

6255455_f3_157

975

5101

192

63

NO-HIT

Contig089G

6263_f2_70

976

5102

1314

437

NO-HIT

Contig089G

6327_c3_447

977

5103

2787

928

2264

9.00E−235

sp:[LN:CAPP_ECOLI]

[AC:P00864] [GN:PPC:GLU]

[OR:

ESCHERICHIA COLI

]

[EC:4.1.13A]

[DE:PHOSPHOENOLPYRUVAT

E CARBOXYLASE, (PEPCASE)

(PEPC)] [SP:P00864]

Contig089G

6898438_f2_136

978

5104

1008

335

905

9.20E−91

sp:[LN:GSHB_ECOLI]

[AC:P04425] [GN:GSHB:GSH-II]

[OR:

ESCHERICHIA COLI

]

[EC:6.3.2.3] [DE:SYNTHETASE)

(GSH-S) (GSHASE)] [SP:P04425]

Contig089G

7089625_c3_414

979

5105

198

65

NO-HIT

Contig089G

79507_c1_232

980

5106

189

62

NO-HIT

Contig089G

867128_c2_329

981

5107

1386

461

1339

9.40E−137

sp:[LN:GLMU_HAEIN]

[AC:P43889]

[GN:GLMU:H10642]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:2.7.7.23]

[DE:ACETYLGLUCOSAMINE-1-

PHOSPHATE

URIDYLTRANSFERASE)]

[SP:P43889]

Contig089G

900432_f2_71

982

5108

735

244

118

5.30E−05

gp:[GI:g4204415] [LN:AF047001]

[AC:AF047001] [PN:unknown]

[OR:

Oenococcus oeni

temperate

bactcriophage fOg44]

[DE:

Oenococcus oeni

temperate

bacteriophage fOg44 Lys44 and

Int44genes complete cds; and

unknown genes.] [NT:orf252]

Contig089G

906252_c1_284

983

5109

918

305

457

2.70E−43

gp:[GI:g3419687]

[LN:ASU77659] [AC:U77659]

[PN:unknown] [OR:

Acinetobacter

lwoffii

K24] [DE:

Acinetobacter

lwoffii

K24 cic,cis-muconate

lactonizing enzyme 1(caTB),

catechol 1,2-dioxygenase (catA),

and muconolactoneisomerase

(catC) genes, complete cds; and

unknown genes.]

Contig089G

975312_c1_214

984

5110

960

319

1292

9.00E−132

gp:[GI:g1209223[LN:ACCEST]

[AC:L38252] [PN:esterase]

[GN:est] [OR:

Acinetobacter

lwoffii

] [DE:

Acinetobacter lwoffii

orf1 and esterase (est) genes,

complete cds.]

Contig089G

9806537_c2_331

985

5111

627

208

248

3.80E−21

sp:[LN:YEAS_ECOLI]

[AC:P76249:O07971:O07969]

[GN:YEAS] [OR:

ESCHERICHIA

COLI

] [DE:HYPOTHETICAL

23.2 KD PROTEIN IN GAPA-

RND INTERGENIC REGION]

[SP:P76249:O07971:O07969]

Contig089G

9878916_c2_306

986

5112

192

63

NO-HIT

Contig089G

9940916_c3_399

987

5113

600

199

NO-HIT

Contig090G

10189410_c1_431

988

5114

1326

441

813

5.10E−81

sp:[LN:FOLC_ECOLI]

[AC:P08192:P78237]

[GN:FOLC:DEDC]

[OR:

ESCHERICHIA COLI

]

[EC:6.3.2.17:6.3.2.12]

[DE:SYNTHETASE) (FPGS)/

DIHYDROFOLATE

SYNTHASE,]

[SP:P08192:P78237]

Contig090G

10316500_f3_369

989

5115

240

79

98

3.00E−05

sp:[LN:TRAR_ECOLI]

[AC:P41065] [GN:TRAR]

[OR:

ESCHERICHIA COLI

]

[DE:TRAR PROTEIN]

[SP:P41065]

Contig090G

10345013_f2_214

990

5116

1842

613

1174

2.90E−119

gp:[GI:g3172117]

[LN:ACCPCAOP]

[AC:L05770:U04359:M33798:U2

0284:U11554:L13114:L03407]

[PN:acyl-CoA dehydrogenase]

[OR:Acinetobacter sp. ADPI]

[DE:Acinetobacter sp. ADPI pca-

qui-pob supraoperonic cluster,

completesequence.] [NT:encodes

protein similar to acyl-CoA

dehydrogenase]

Contig090G

10554502_f1_13

991

5117

564

187

88

0.00069

pir:[LN:S60805] [AC:S60805]

[PN:M protein precursor] [CL:M5

protein] [OR:

Streptococcus

pyogenes

] [SR:serotype M27,

serotype M27] [SR:serotype M27,]

Contig090G

10682837_f2_259

992

5118

546

181

89

0.00049

gp:[GI:g3064163] [LN:AF036417]

[AC:AF036417] [PN:mucin-like

protein] [GN:EMUCe-5]

[OR:

Trypanosoma cruzi

]

[DE:

Trypanosoma cruzi

mucin-

like protein (EMUCe-5) mRNA,

partial cds.] [RE:

Contig090G

10742005_f3_365

993

5119

411

136

283

7.50E−25

gp:[GI:d1037230:g4063790]

[LN:AB008550] [AC:AB008550]

[OR:

Pseudomonas aeruginosa

phage phi CTX] [SR:

Pseudomonas

aeruginosa

phage phi CTX

(strain:phiCTX-c]

[DE:

Pseudomonas aeruginosa

phage phi CTX, complete genome

sequence.] [NT:orf17; similar to W

gene of P2:baseplate]

Contig090G

10820343_f1_295

994

5120

726

241

107

9.20E−10

pir:[LN:C69266] [AC:C69266]

[PN:AND(P)H-flavin

oxidoreductase homolog]

[OR:

Archaeoglobus fulgidus

]

Contig090G

10976567_f1_375

995

5121

324

107

NO-HIT

Contig090G

11049077_c1_396

996

5122

1068

355

328

1.30E−29

sp:[LN:YF72_HAEIN]

[AC:P46495] [GN:HI1572]

[OR:

HAEMOPHILUS

INFLUENZAE

] [DE:PUTATIVE

INTEGRASE/RECOMBINASE

HI1572] [SP:P46495]

Contig090G

11054658_f3_342

997

5123

207

68

NO-HIT

Contig090G

11213125_c2_631

998

5124

222

73

NO-HIT

Contig090G

115666_f3_305

999

5125

1740

579

2029

7.10E−210

sp:[LN:SYP_HAEIN]

[AC:P43830] [GN:PROS:H10729]

[OR:

HAEMOPHILUS

INFLUENZAE

](EC:6.1.1.15]

[DE:PROLYL-TRNA

SYNTHETASE, (PROLINE--

TRNA LIGASE) (PRORS)]

[SP:P43830]

Contig090G

12500086_c2_616

1000

5126

1083

360

331

6.10E−30

gp:[GI:g1657970]

[LN:PAU73506] [AC:U73506]

[PN:OruR] [GN:oruR]

[OR:

Pseudomonas aeruginosa

]

[DE:

Pseudomonas aeruginosa

ornithine utilization regulatory

(oruR)gene, complete cds.]

[NT:regulatory locus for ornithine

utilization]

Contig090G

12681708_c3_724

1001

5127

861

286

428

3.20E−40

sp:[LN:MREC_HAEIN]

[AC:P44475] [GN:MREC:H10038]

[OR:

HAEMOPHILUS

INFLUENZAE

] [DE:ROD

SHAPE−DETERMINING

PROTEIN MREC] [SP:P44475]

Contig090G

12687800_f1_105

1002

5128

264

87

122

8.60E−08

gp:[GI:d1037248:g4063808]

[LN:AB008550] [AC:AB008550]

[OR:

Pseudomonas aeruginosa

phage phi CTX] [SR:

Pseudomonas

aeruginosa

phage phi CTX

(strain:phiCTX-c]

[DE:

Pseudomonas aeruginosa

phage phi CTX, complete genome

sequence.] [NT:orf34]

Contig090G

127180_c1_398

1003

5129

366

121

87

0.00044

pir:[LN:C69774] [AC:C69774]

[PN:transcription regulator phage-

related homolog ydcN] [GN:ydcN]

[OR:

Bacillus subtilis

]

Contig090G

12922207_f1_87

1004

5130

1788

595

725

1.10E−71

gp:[GI:e1287203:g3063885]

[LN:MLCB1883.21c]

[PN:putative acyl-coA

dehydrogenase]

[GN:MLCB1883.21c]

[OR:

Mycobacterium leprae

]

[DE:

Mycobacterium leprae

cosmid

B1883.] [NT:MLCB1883.21c,

probable acyl-coA dehydrogenase,

len:]

Contig090G

13175068_c2_528

1005

5131

222

73

NO-HIT

Contig090G

132252_f3_298

1006

5132

804

267

177

9.90E−12

gp:[GI:g3056882]

LN:APU33059] [AC:U33059]

[PN:unknown]

OR:

Actinosynnema pretiosum

suranticum

] [DE:

Actinosynnema

pretiosum auranticum

diaminopimelate

decarboxylase(lysA), 3-amino-5-

hydroxybenzoic acid synthase,

oxidoreductase,phosphatase, and

aminodehydroquinate synthase

genes, complete cds;transcription

activator gene, partial cds; and

unknown genes.] NT:ORF5;

similar to transmembrane proteins

EpiH and]

Contig090G

134666_f2_240

1007

5133

522

173

530

5.00E−51

gp:[GI:d1037236:g4063796]

[LN:AB008550] [AC:AB008550]

[OR:

Pseudomonas aeruginosa

phage phi CTX] [SR:

Pseudomonas

aeruginosa

phage phi CTX

(strain:phiCTX-c]

[DE:

Pseudomonas aeruginosa

phage phi CTX, complete genome

sequence.] [NT:orf23;similar to

F2 gene of P2]

Contig090G

1361305_c1_467

1008

5134

402

133

418

3.70E−39

sp:[LN:PILH_PSEAE]

[AC:P43501] [GN:PILH]

[OR:

PSEUDOMONAS

AERUGINOSA

] [DE:PILH

PROTEIN] [SP:P43501]

Contig090G

13847000_c2_602

1009

5135

312

103

NO-HIT

Contig090G

13867202_f2_145

1010

5136

801

266

102

3.40E−05

pir:[LN:C70826] [AC:C70826]

[PN:hypothetical protein Rv0674]

[GN:Rv0674] [OR:

Mycobacterium

tuberculosis

]

Contig090G

13949127_f2_108

1011

5137

831

276

286

3.60E−25

pir:[LN:A57258] [AC:A57258]

[PN:rha protein] [OR:phage phi-

80]

Contig090G

1415876_f2_177

1012

5138

3102

1033

1380

4.20E−141

gp:[GI:g4155092] [LN:AE001487]

[AC:AE001487:AE001439]

[PN:putative efflux transporter]

[GN:jhp0554] [OR:

Helicobacter

pylori

J99] [DE:

Helicobacter

pylori

, strain J99 section 48 of 132

of the completegenome.]

[NT:similar to

H. pylori

26695

gene HP0607]

Contig090G

14172767_f1_101

1013

5139

288

95

111

1.30E−06

gp:[GI:g3139111] [LN:AF063097]

[AC:AF063097:J02474:X02300:X

02301:M58023:M13202:L29304:

X87173:M6467 7] [PN:gpE+E′]

[GN:E+E′] [FN:essential tail

protein] [OR:Bactcriophage P2]

[DE:Bacteriophage P2, complete

genome.] [NT:shares amino

terminus with gpE; −1 frameshift]

Contig090G

14339426_f2_246

1014

5140

351

116

NO-HIT

Contig090G

14453592_f1_86

1015

5141

393

130

96

4.90E−05

sp:[LN:ASR_ECOLI]

[AC:P36560:P77267] [GN:ASR]

[OR:

ESCHERICHIA COLI

9

[DE:ACID SHOCK PROTEIN]

[SP:P36560:P77267]

Contig090G

14509717_c1_491

1016

5142

888

295

836

1.90E−83

sp:[LN:YEDU_ECOLI]

[AC:P31658:P76338] [GN:YEDU]

[OR:

ESCHERICHIA COLI

]

[DE:31.1 KD PROTEIN IN DCM-

SERU INTERGENIC REGION]

[SP:P31658:P76338]

Contig090G

14630390_f3_364

1017

5143

858

285

472

7.00E−45

gp:[GI:d1037223:g4063783]

[LN:AB008550] [AC:AB008550]

[OR:

Pseudomonas aeruginosa

phage phi CTX] [SR:

Pseudomonas

aeruginosa

phage phi CTX

(strain:phiCTX-c]

[DE:

Pseudomonas aeruginosa

phage phi CTX, complete genome

sequence.] [NT:orf11; similar to

various lytic enzyme genes]

Contig090G

14645260_c1_420

1018

5144

2115

704

137

8.60E−14

gp:[GI:g151399] [LN:PSENOSA]

[AC:M60717] [GN:nosA]

[OR:

Pseudomonas stutzeri

]

[SR:

Pseudomonas stutzeri

(strain

JM604) DNA] [DE:

P.stutzeri

NosA protein (nosA) gene,

complete cds.]

Contig090G

14881510_c3_707

1019

5145

1416

471

322

4.40E−32

pir:[LN:H70423] [AC:H70423]

[PN:oxygen-independent

coproporphyrinogen III oxidase]

[GN:hemF] [CL:oxygen-

independent coproporphyrinogen

oxidase] [OR:

Aquifex aeoticus

]

Contig090G

15057017_f3_337

1020

5146

1932

643

474

4.30E−45

sp:[LN:BTUB_SALTY]

[AC:P37409] [GN:BTUB]

[OR:

SALMONELLA

TYPHIMURIUM

] [DE:VITAMIN

B12 RECEPTOR PRECURSOR]

[SP:P37409]

Contig090G

15799000_f2_239

1021

5147

1230

409

1378

6.90E−141

gp:[GI:d1037235:g4063795]

[LN:AB008550] [AC:AB008550]

[OR:

Pseudomonas aeruginosa

phage phi CTX] [SR:

Pseudomonas

aeruginosa

phage phi CTX

(strain:phiCTX-c]

[DE:

Pseudomonas aeruginosa

phage phi CTX, complete genome

sequence.] [NT:orf22; similar to

F1 gene of P2]

Contig090G

15801433_f3_267

1022

5148

627

208

NO-HIT

Contig090G

15818808_c1_437

1023

5149

492

163

NO-HIT

Contig090G

15822157_f1_11

1024

5150

699

232

211

3.20E−17

gp:[GI:g2668765] [LN:AF034975]

[AC:AF034975] [PN:Roi]

[GN:roi] [OR:Bacteriophage H-

19B] [DE:Bacteriophage H-19B

essential recombination function

protein (erf),kil protein (kil),

regulatory protein cIII (cIII),

protein gp17(17), N protein (N), cI

protein (cI), cro protein (cro),

cIIprotein (cII), O protein (O), P

protein (P), ren protein (ren),

ninorf-58-A, nin orf-58-B, Roi

(roi), nin orf-204, nin orf-59,

Qprotein (Q), Shiga-like toxin A

subunit (slt-IA), Shiga-like toxinB

subunit (slt-IB), putative holin

protein (S), R protein (R), andRz

protein (Rz) genes, complete cds.]

[NT:similar to Bacteriophage

HK022 Roi, encoded by]

Contig090G

15822215_f2_126

1025

5151

486

161

447

3.10E−42

gp:[GI:e1154545:g2570059]

[LN:NGMS11DNA]

[AC:AJ004687] [PN:N-4 cytosine-

speciticmMethyltransferase]

[OR:

Neisseria gonorrhoeae

]

[DE:

Neisseria gonorrheae

MS11

encoding N-4 cytosine-

speciticmethyltransferase.]

Contig090G

15836077_c2_590

1026

5152

384

127

500

7.60E−48

sp:[LN:PILG_PSEAE]

[AC:P46384] [GN:P[LG]

[OR:

PSEUDOMONAS

AERUGINOSA

] [DE:PILG

PROTEIN] [SP:P46384]

Contig090G

15877162_f2_255

1027

5153

1947

648

956

3.60E−96

gp:[GI:g3983168] [LN:AF100611]

[AC:AF100611] [PN:SecD]

[GN:secD] [OR:

Salmonella

choleraesuis

] [DE:

Salmonella

choleraesuis

SecD (secD) gene,

complete cds.] [NT:protein

secretion system subunit]

Contig090G

15892175_f3_279

1028

5154

195

64

NO-HIT

Contig090G

16102250_c3_739

1029

5155

630

209

NO-HIT

Contig090G

16208510_c2_635

1030

5156

600

199

155

2.70E−11

sp:[LN:RUS_ECOLI]

[AC:P40116] [GN:RUS]

[OR:

ESCHERICHIA COLI

]

[EC:3.1.22.—] [DE:JUNCTION

NUCLEASE RUS) (HOLLIDAY

JUCTION RESOLVASE RUS)]

[SP:P40116]

Contig090G

16212837_f3_333

1031

5157

879

292

240

2.70E−20

pir:[LN:H70882] [AC:H70882]

[PN:hypothetical protein Rv2777c]

[GN:Rv2777c]

[OR:

Mycobacterium tuberculosis

]

Contig090G

16274187_c2_567

1032

5158

1062

353

205

1.90E−14

gp:[GI:g1657970]

[LN:PAU73506] [AC:U73506]

[PN:OruR[GN:oruR]

[OR:

Pseudomonas aeruginosa

]

[PE:

Pseudomonas aeruginosa

ornithine utilization regulatory

(oruR)gene, complete cds.]

[NT:regulatory locus for ornithine

utilization]

Contig090G

16292755_f2_130

1033

5159

573

190

NO-HIT

Contig090G

16407527_f2_193

1034

5160

1368

455

1384

1.60E−141

gp:[GI:c1420019:g4539192]

[LN:SC6A5] [AC:AL049485]

[PN:probable acetyl coA

acetyltransferase] [GN:SC6A5.37]

[OR:

Streptomyces coelicolor

]

[DE:

Streptomyces coelicolor

cosmid 6A5.] [NT:SC6A5.37,

probable acetyl coA

acetyltransferase]

Contig090G

16594066_c1_508

1035

5161

351

116

NO-HIT

Contig090G

16598787_f1_97

1036

5162

318

105

142

6.50E−10

gp:[GI:d1037222:g4063782]

[LN:AB008550] [AC:AB008550]

[OR:

Pseudomonas aeruginosa

phage.phi CTX1 [SR:

Pseudomonas

aeruginosa

phage phi CTX

(strain:phiCTX-c]

[DE:

Pseudomonas aeruginosa

phage phi CTX, complete genome

sequence.] [NT:orf10]

Contig090G

16617183_c1_469

1037

5163

4539

1512

1590

3.70E−218

gp:[GI:g3241969]

[LN:PAU79580] [AC:U79580]

[PN:ChpA] [GN:chpA]

[OR:

Pseudomonas aeruginosa

]

[DE:

Pseudomonas aeruginosa

pilK

gene, partial cds; and PilL,

ChpA,ChpB, ChpC, ChpD, and

ChpE genes, complete cds.]

[NT:CheAY homolog]

Contig090G

16692040_c2_513

1038

5164

912

303

397

6.20E−37

pir:[LN:B69445] [AC:B69445]

[PN:conserved hypothetical

protein AF1563]

[OR:

Archaeoglobus fulgidus]

Contig090G

16697502_c3_637

1039

5165

438

145

324

3.40E−29

sp:[LN:YCIA_HAEIN]

[AC:P44886] [GN:HI0827]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

HI0827 PRECURSOR]

[SP:P44886]

Contig090G

16808128_f2_211

1040

5166

663

220

319

2.10E−28

pir:[LN:S71634] [AC:S71634]

[PN:stearoyl-CoA desaturase.:delta-

9 fatty acid desaturase] [GN:Ole1]

[CL:yeast stearoyl-CoA

desaturase:cytochrome b5 core

homology:stearoyl-CoA desaturase

homology] [OR:

Cryptococcus

curvatus

] [EC:1.14.99.5]

Contig090G

16828450_f1_89

1041

5167

225

74

NO-HIT

Contig090G

16848825_f3_376

1042

5168

693

230

544

1.60E−52

sp:[LN:QUEA_ECOLI]

[AC:P21516] [GN:QUEA]

[OR:

ESCHERICHIA COLI

]

[EC:5.—.—.—] [DE:(QUEUOSINE

BIOSYNTHESIS PROTEIN

QUEA)] [SP:P21516]

Contig090G

17068813_c2_570

1043

5169

645

214

289

3.80E−24

gp:[GI:g1256742]

[LN:TRBR272P] [AC:L04603]

[PN:R27-2 protein]

[OR:

Trypanosoma cruzi

]

[SR:

Trypanosoma cruzi

(strain

Sylvio X-10) DNA]

[DE:

Trypanosoma cruzi

R27-2

protein gene, complete cds.]

Contig090G

188802_c3_668

1044

5170

972

323

NO-HIT

Contig090G

194702_f3_370

1045

5171

279

92

NO-HIT

Contig090G

19532757_c2_592

1046

5172

2130

709

1536

1.20E−157

sp:[LN:PILJ_PSEAE]

[AC:P42257] [GN:PILJ]

[OR:

PSEUDOMONAS

AERUGINOSA

] [DE:PIL]

PROTEIN] [SP:P42257]

Contig090G

19551516_c1_445

1047

5173

1293

430

1074

1.90E−125

pir:[LN:542207] [AC:542207]

[PN:

porin

] [CL:

Pseudomonas

porin

oprB] [OR:

Pseudomonas

aeruginosa

]

Contig090G

19572327_c2_535

1048

5174

186

61

NO-HIT

Contig090G

19631330_c1_495

1049

5175

483

160

NO-HIT

Contig090G

197177_f1_100

1050

5176

609

202

302

7.30E−27

gp:[GI:d1037232:g4063792]

[LN:AB008550] [AC:AB008550]

[OR:

Pseudomonas aeruginosa

phage phi CTX] [SR:

Pseudomonas

aeruginosa

phage phi CTX

(strain:phiCTX-c]

[DE:

Pseudomonas aeruginosa

phage phi CTX, complete genome

sequence.] [NT:orf19; similar to 1

gene of P2]

Contig090G

19940937_c3_662

1051

5177

1023

340

853

3.00E−85

gp:[GI:d1037213:g4063773]

[LN:AB3008550] [AC:AB008550]

[OR:

Pseudomonas aeruginosa

phage phi CTX] [SR:

Pseudomonas

aeruginosa

phage phi CTX

(strain:phiCTX-c]

[DE:

Pseudomonas aeruginosa

phage phi CTX, complete genome

sequence.] [NT:orf1; similar to Q

gene of P2:capsid packaging]

Contig090G

20320913_c1_492

1052

5178

198

65

NO-HIT

Contig090G

20355325_f2_128

1053

5179

1371

456

986

2.40E−99

gp:[GI:e1361778:g4071071]

[LN:YPS9592] [ACA1009592]

[PN:integrase] [GN:int]

[OR:

Yersinia pseudotuberculosis

]

[DE:

Yersinia pseudotuberculosis

DNA encoding the right hand

border ofthe High Pathogenicity

Island, including tRNA-Asn gene,

int geneand ORF1, partial.]

Contig090G

20401566_c3_699

1054

5180

381

126

370

4.50E−34

pir:[LN:G64974] [AC:G64974]

[PN:hypothetical protein b2080]

[OR:

Escherichia coli

]

Contig090G

20422137_f2_180

1055

5181

888

295

600

1.90E−58

sp:[LN:FPG_HAEIN]

[AC:P44948]

[GN:MUTM:FPG:H10946]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:32.2.23]

[DE:GLYCOSYLASE)]

[SP:P44948]

Contig090G

20500052_c3_717

1056

5182

2073

690

1512

4.40E−155

pir:[LN:C70838] [AC:C70838]

[PN:probable zinc

metalloproteinase Rv0198c]

[GN:Rv0198c]

[OR:

Mycobacterium tuberculosis

]

Contig090G

20501716_c1_468

1057

5183

570

189

340

6.80E−31

sp:[LN:PILI_PSEAE]

[AC:P43502] [GN:PILI)

[OR:

PSEUDOMONAS

AERUGINOSA

] [DE:PILI

PROTEIN] [SP:P43502]

Contig090G

20505300_f1_64

1058

5184

1179

392

350

5.90E−32

gp:[GI:g3978488] [LN:AF092918]

[AC:AF092918] [PN:virulence

regulating homolog]

[OR:

Pseudomonas alcaligenes

]

[DE:

Pseudomonas alcaligenes

outer membrane Xcp-secretion

system genecluster.] [NT:OrfY2;

similar to

Mycobacterium

tuberculosis

]

Contig090G

20509718_f1_8

1059

5185

327

108

NO-HIT

Contig090G

20600001_f2_241

1060

5186

360

119

205

1.40E−16

gp:[GI:g3139110[LN:AF063097]

[AC:AF063097:J02474:X02300:X

02301:M58023:M13202:L29304:

X87173:M64677] [PN:gpE]

[GN:E] [FN:essential tail protein)

[OR:Bacteriophage P2]

[DE:Bacteriophage P2, complete

genome.]

Contig090G

20734577_c1_415

1061

5187

1815

604

1899

4.30E−196

gp:[GI:d1037214:g4063774]

[LN:AB008550] [AC:AB008550]

[OR:

Pseudomonas aeruginosa

phage phi CTX] [SR:

Pseudomonas

aeruginosa

phage phi CTX

(strain:phiCTX-c]

[DE:

Pseudomonas aeruginosa

phage phi CTX, complete genome

sequence.] [NT:orf2; similar to P

gene of P2:DNA-dependent

ATPase]

Contig090G

21484385_f1_56

1062

5188

195

64

NO-HIT

Contig090G

21484637_f1_24

1063

5189

783

260

856

1.40E−85

sp:[LN:CYSH_PSEAE]

[AC:005927] [GN:CYSH]

[OR:

PSEUDOMONAS

AERUGINOSA

] [EC:1.8.99.4]

[DE:PI-[OSPFIOADENYLYLSUL

FATE REDUCTASF) (PAPS

SULFOTRANSFERASE)]

[SP:O05927]

Contig090G

21522577_c1_470

1064

5190

543

180

NO-HIT

Contig090G

2165937_c3_740

1065

5191

291

96

NO-HIT

Contig090G

21671875_f2_140

1066

5192

888

295

134

1.50E−05

gp:[GI:e1250342:g2853078]

[LN:ATF24J7] [AC:AL021768]

[PN:TMV resistance protein N-

like] [GN:F24J7.70]

[OR:

Arabidopsis thaliana

]

[SR:thale cress) [DE:

Arabidopsis

thaliana

DNA chromosome 4,

BAC clone F24J7

(ESSAIIproject).] [NT:similarity to

TMV resistance protein N,

Nicotiana]

Contig090G

21671952_f1_104

1067

5193

1314

437

872

2.90E−87

gp:[GI:d1037241:g4063801]

[LN:AB008550] [AC:AB008550]

[OR:

Pseudomonas aeruginosa

phage phi CTX] [SR:

Pseudomonas

aeruginosa

phage phi CTX

(strain:phiCTX-c]

[DE:

Pseudomonas aeruginosa

phage phi CTX, complete genome

sequence.] [NT:orf27; similar to D

gene of P2]

Contig090G

21678125_f3_380

1068

5194

834

277

236

7.20E−20

gp:[GI:g902453] [LN:ECU24203]

[AC:U24203] [GN:yciB]

[OR:

Escherichia coli

]

[DE:

Escherichia coli

ECOR 52

(yciD) gene, partial cds, and

(yciC), (yciB), (yciA), membrane

protein (tonB), (ycit), putative

potassiumchannel (kch), and

cardiolipin synthase (cls) genes,

complete cds.]

Contig090G

21688907_f2_245

1069

5195

243

80

NO-HIT

Contig090G

21759687_c2_586

1070

5196

390

129

420

2.30E−39

sp:[LN:PHNA_ECOLI]

[AC:P16680] [GN:PHNA]

[OR:

ESCHERICHIA COLI

]

[DE:PHNA PROTEIN]

[SP:P16680]

Contig090G

21891885_f3_297

1071

5197

2631

876

1584

1.00E−162

gp:[Gt:g2981043] [LN:AF051690]

[AC:AF051690] [PN:iron-uptake

factor] [GN:piuB]

[OR:

Pseudomonas aeruginosa

]

[DE:

Pseudomonas aeruginosa

iron-

uptake factor (piuC), hydroxamate-

typeferrisiderophore receptor

(piuA), and iron-uptake factor

(piuB)genes, complete cds.]

[NT:PiuB; contains

phosphopantetheine attachment

motif]

Contig090G

22065688_c2_577

1072

5198

513

170

NO-HIT

Contig090G

22267550_f1_120

1073

5199

1929

642

641

2.50E−73

pir:[LN:B65005] [AC:B65005]

[PN:hypothetical protein b2324]

[OR:

Escherichia coli]

Contig090G

22267787_f2_168

1074

5200

603

200

NO-HIT

Contig090G

22301433_f1_112

1075

5201

609

202

NO-HIT

Contig090G

22438818_c2_603

1076

5202

1209

402

1305

3.80E−133

sp:[LN:BACA_RHIME]

[AC:Q08120] [GN:BACA]

[OR:

RHIZOBIUM MELILOTI

]

[DE:BACA PROTEIN]

[SP:Q08120]

Contig090G

22458575_f2_258

1077

5203

753

250

404

1.10E−37

sp:[LN:RADC_ECOLI]

[AC:P25531] [GN:RADC]

[OR:

ESCHERICHIA COLI

]

[DE:DNA REPAIR PROTEIN

RADC] [SP:P25531]

Contig090G

22479662_c1_452

1078

5204

372

123

NO-HIT

Contig090G

22678958_c1_391

1079

5205

1284

427

1056

9.10E−107

sp:[LN:DFP_HAEIN]

[AC:P44953] [GN:DFP:H10953]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:DNA/PANTOTOTHENATE

METABOLISM

FLAVOPROTEIN HOMOLOG]

[SP:P44953]

Contig090G

22682840_f1_7

1080

5206

369

122

NO-HIT

Contig090G

22828452_c3_715

1081

5207

1236

411

670

7.30E−66

gp:[GI:e1347711:g3878113]

[LN:CEK01C8] [AC:Z49068]

[GN:K01C8.1]

[OR:

Caenorhabditis elegans

]

[DE:

Caenorhabditis elegans

cosmid K01C8, complete

sequence.] [NT:simitar to

threonine dehydratase; cDNA

EST]

Contig090G

22890628_c3_687

1082

5208

2457

818

4177

0

sp:[LN:DHGA_ACICA]

[AC:P05465] [GN:GDHA]

[OR:

ACINETOBACTER

CALCOACETICUS

]

[EC:1.1.99.17] [DE:(EC1.1.99.17)

(QUINOPROTEIN GLUCOSE

DH) (GDH-A)] [SP:P05465]

Contig090G

2303_c3_737

1083

5209

270

89

158

1.30E−11

sp:[LN:YDAS_ECOLI]

[AC:P76663] [GN:YDAS]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 11.0 KD

PROTEIN IN SIEB-TRKG

INTERGENIC REGION

PRECURSOR] [SP:P76063]

Contig090G

23453776_c2_557

1084

5210

429

142

99

0.00018

pir:[LN:B64978] [AC:B64978]

[PN:hypothetical protein b2107]

[OR:

Escherichia coli

]

Contig090G

23458438_f3_308

1085

5211

321

106

246

6.20E−21

sp:[LN:CYPC_ECOLI]

[AC:P39159] [GN:PPIC:PARVA]

[OR:

ESCHERICHIA COLI

]

[EC:5.2.1.8] [DE:(ROTAMASE

C) (PARVULIN)] [SP:P39159]

Contig090G

23471010_c2_623

1086

5212

627

208

NO-HIT

Contig090G

23525262_f2_156

1087

5213

582

193

350

6.70E−41

gp:[GI:g1134957]

[LN:BCU4I 162] [AC:U41162]

[OR:

Burkholderia cepacia

]

[SR:

Burkholderia cepacia

strain=17616] [DE:

Burkholderia

cepacia D-serine deaminase (Dsd)

gene, complete cds.]

[NT:unidentified ORF]

Contig090G

23593812_c1_485

1088

5214

1482

493

1360

5.60E−139

pir:[LN:A65117]

[AC:A65117:JQ1272:524199]

[PN:cytosotic axial filament

protein cafA] [GN:cafA]

[OR:

Escherichia coli

]

Contig090G

23632805_f2_196

1089

5215

657

218

483

4.80E−46

pir:[LN:C65074] [AC:C65074]

[PN:hypothetical protein b2899]

[CL:hemolysin III yplQ]

[OR:

Escherichia coli

]

Contig090G

23634628_c2_554

1090

5216

771

256

360

5.20E−33

pir:[LN:B70450] [AC:B70450]

[PN:beta 1,4 glucosyltransferase]

[GN:IgtF] [OR:

Aquifex aeolicus

]

Contig090G

23642526_c3_719

1091

5217

561

186

NO-HIT

Contig090G

23729718_c1_471

1092

5218

345

114

104

7.00E−06

gp:[GI:e328150:g2274993]

[LN:HVJ000230] [AC:A1000230]

[OR:

Hordeum vulgare

]

[DE:

Hordeum vulgare

mRNA for

expressed sequence tag.]

]NT:unnamed protein product]

Contig090G

23730035_c1_448

1093

5219

1140

379

348

2.70E−67

pir:[LN:S39866] [AC:539866]

[PN:outer membrane protein CD

precursor] [OR:

Moraxella

catarrhalis

]

Contig090G

23829052_f1_287

1094

5220

1536

511

1576

7.20E−162

sp:[LN:AMID_MORCA]

[AC:Q49091] [OR:

MORAXELLA

CATARRHALIS] [EC:3.5.1.4]

[DE:PUTATIVE AMIDASE,]

[SP:Q49091]

Contig090G

23867217_c1_511

1095

5221

282

93

NO-HIT

Contig090G

23958387_f1_59

1096

5222

1398

465

1223

1.80E−124

sp:[LN:YICE_ECOLI]

[AC:P27432] [GN:YICE]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 48.9 KD

PROTEIN IN GLTS-SELC

INTERGENIC REGION]

[SP:P27432]

Contig090G

24016875_c2_553

1097

5223

951

316

945

5.30E−95

gp:[GI:g3482882]

[LN:PAU63816] [AC:U63816]

[PN:unknown] [GN:ilvE]

[OR:

Pseudomonas aeruginosa

]

[DL:

Pseudomonas aeruginosa

glnE

gene, partial cds; ilvE , ADP-

heptose: LPS heptosyltransferase

homolog (F), lipopolysaccharide

heptosyltransferase I homolog

(C), glucosyltransferase I homolog

(G), RfaP protein (P), and unknown

protein (X) genes, complete cds;

and inaA gene, partial cds.]

[NT:similar to ilvE from

Escherichia coli

and other]

Contig090G

24019712_c2_565

1098

5224

1272

423

1979

1.40E−204

sp:[LN:TRPB_ACICA]

[AC:P16706] [GN:TRPB]

[OR:

ACINETOBACTER

CALCOACETICUS

]

[EC:4.2.1.20]

[DE:TRYPTOPHAN SYNTHASE

BETA CHAIN.] [SP:P16706]

Contig090G

24023933_f3_366

1099

5225

1995

664

316

5.90E−26

gp:[GI:g3522881]

[LN:B1U32222]

[AC:U32222:X53318:X04449:U5

1471] [GN:K] [OR:Bacteriophage

186] [DE:Bacteriophage 186,

complete sequence.] [NT:similar to

P2 tail fiber protein H. PIR

Accession]

Contig090G

24042186_f2_244

1100

5226

210

69

NO-HIT

Contig090G

24094036_c1_478

1101

5227

1506

501

1276

4.40E−130

sp:[LN:YAAJ_HAEIN]

[AC:P44555] [GN:H10183]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

H10183] [SP:P44555]

Contig090G

24105316_c1_484

1102

5228

447

148

128

2.00E−08

sp:[LN:MRED_ECOLI]

[AC:P16927] [GN:MRED]

[OR:

ESCHERICHIA COLI

]

[DE:ROD SHAPE-

DETERMINING PROTEIN

MRED] [SP:P16927]

Contig090G

24251318_f1_65

1103

5229

2148

715

1885

1.30E−194

gp:[GI:e1420020:g4539193]

[LN:SC6A5] [AC:AL049485]

[PN:putative fatty oxidation

protein] [GN:SC6A5.38]

[OR:

Streptomyces coelicolor

]

[DE:

Streptomyces coelicolor

]

cosmid 6A5.] [NT:SC6A5.38,

possible fatty oxidation protein,

len:]

Contig090G

24260927_c3_667

1104

5230

1062

353

198

1.90E−13

pir:[LN:F70346] [AC:F70346]

[PN:mannosyltransterase C]

[GN:mtfC] [OR:

Aquifex aeolicus

]

Contig090G

24274160_f1_103

1105

5231

456

151

412

1.60E−38

gp:[GI:d1037240:g4063800]

[LN:A13008550] [AC:AB008550]

[OR:

Pseudomonas aeruginosa

phage phi CTX] [SR:

Pseudomonas

aeruginosa

phage phi CTX

(strain:phiCTX-c]

[DE:

Pseudomonas aeruginosa

phage phi CTX, complete genome

sequence.] [NT:orf26; similar to U

gene of P2]

Contig090G

24276638_c1_497

1106

5232

2649

882

NO-HIT

Contig090G

24319702_f1_5

1107

5233

792

263

230

3.10E−19

pir:[LN:F64859] [AC:F64859]

[PN:hypothetical protein b1145]

[OR:

Escherichia coli]

Contig090G

24323462_f2_247

1108

5234

216

71

NO-HIT

Contig090G

24329681_f3_362

1109

5235

522

173

305

3.50E−27

gp:[GI:d1037218:g4063778]

[LN:AB008550] [AC:AB008550]

[OR:

Pseudomonas aeruginosa

phage phi CTX] [SR:

Pseudomonas

aeruginosa

phage phi CTX

(strain:phiCTX-c]

[DE:

Pseudomonas aeruginosa

phage phi CTX. complete genome

sequence.] [NT:orf6; similar to L

gene of P2:capsid completion]

Contig090G

24412906_c2_618

1110

5236

912

303

424

8.60E−40

sp:[LN:YQHC_ECOLI]

[AC:Q46855] [GN:YQHC]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL

TRANSCRIPTIONAL

REGULATOR IN METC-SUFI

INTERGENIC REGION]

[SP:Q46855]

Contig090G

24416687_f2_252

1111

5237

603

200

426

5.30E−40

sp:[LN:QUEA_HAEIN]

[AC:P44595] [GN:QUEA:H10245]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:5.—.—.—]

[DE:(QUEUOSINE

BIOSYNTHESIS PROTEIN

QUEA)] [SP:P44595]

Contig090G

24423317_c1_480

1112

5238

1080

359

111

7.30E−06

sp:[LN:YPFG_ECOLI]

[AC:P76559] [GN:YPFG]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 38.7 KD

PROTEIN IN TKTB-NARQ

INTERGENIC REGION

PRECURSOR] [SP:P76559]

Contig090G

24495255_f2_178

1113

5239

687

228

243

1.30E−20

gp:[GI:g3135321] [LN:AF057031]

[AC:AF057031] [PN:putative

thiol:disulfide interchange protein]

[GN:dsbC] [OR:

Pseudomonas

aeruginosa

] [DE:

Pseudomonas

aeruginosa putative thiol:disulfide

interchange proteinprecursor

(dsbC) gene, complete cds.]

[NT:DsbC]

Contig090G

24642753_c2_568

1114

5240

903

300

756

5.60E−75

sp:[LN:ACCD_ECOLI]

[AC:P08193:P78251:P76937]

[GN:ACCD:DEDB:USG]

[OR:

ESCHERICHIA COLI

]

[EC:6.4.1.2] [DE:(EC 6.4.1.2)]

[SP:P08193:P78251:P76937]

Contig090G

24644587_f1_98

1115

5241

456

151

334

2.90E−30

gp:[GI:d1037227:g4063787]

[LN:AB008550] [AC:AB008550]

[OR:

Pseudomonas aeruginosa

phage phi CTX] [SR:

Pseudomonas

aeruginosa

phage phi CTX

(strain:phiCTX-c]

[DE:

Pseudomonas aeruginosa

phage phi CTX, complete genome

sequence.] [NT:orf14; similar to S

gene of P2:tail completion]

Contig090G

24647202_f1_38

1116

5242

216

71

NO-HIT

Contig090G

24648562_f2_179

1117

5243

831

276

179

6.50E−12

sp:[LN:YBEQ_ECOLI]

[AC:P77234] [GN:YBEQ]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 37.3 KD

PROTEIN IN LEUS-GLTL

INTERGENIC REGION]

[SP:P77234]

Contig090G

24813457_c3_680

1118

5244

2778

925

2774

8.10E−289

gp:[GI:d1034369:g3649789]

[LN:AB012226] [AC:AB012226]

[PN:SecA] [OR:

Vibrio

alginolyticus] [SR:[

Vibrio

alginolyticus

DNA] [DE:

Vibrio

alginolyticus

gene for SecA,

complete cds.]

Contig090G

24823387_c1_457

1119

5245

465

154

98

0.00053

gp:[GI:e1310302:g3294247]

[LN:SC7C7] [AC:AL031031]

[PN:hypothetical protein

SC7C7.14] [GN:5C7C7.14]

[OR:

Streptomyces coelicolor

]

[DE:

Streptomyces coelicolor

cosmid 7C7.] [NT:SC7C7.14,

unknown, ten: 161]

Contig090G

2500953_f3_304

1120

5246

669

222

NO-HIT

Contig090G

25401577_f3_378

1121

5247

1134

377

1398

5.20E−143

sp:[LN:TGT_SHIFL]

[AC:Q54177] [GN:TGT:VACC]

[OR:

SHIGELLA FLEXNERI]

[EC:2.4.2.29] [DE:PROTEIN

VACC)] [SP:Q54177]

Contig090G

25494032_c2_562

1122

5248

570

189

NO-HIT

Contig090G

25506252_f1_68

1123

5249

1335

444

1265

6.50E−129

sp:[LN:YHJE_ECOLI]

[AC:P37643] [GN:YHJE]

[OR:

ESCHERICHIA COLI

]

[DE:REGION (0440)]

[SP:P37643]

Contig090G

25522561_c3_678

1124

5250

501

166

116

5.50E−05

sp:[LN:CALD_CHICK]

[AC:P12957:Q90756:Q90761:Q92

018:Q99230:Q03698]

[GN:CALDI:CAD] [OR:

GALLUS

GALLUS

] [DE:CALDESMON

(CDM)]

[SP:P12957:Q90756:Q90761:Q92

018:Q99230:Q03698]

Contig090G

25525311_f1_9

1125

5251

1155

384

173

2.10E−23

pir:[LN:E64913] [AC:E64913]

[PN:hypothetical protein b1579]

[CL:hypothetica1 protein b1579]

[OR:

Escherichia coli

]

Contig090G

25585892_c3_673

1126

5252

1680

559

577

6.80E−61

sp:[LN:BAES_ECOLI]

[AC:P30847:P76401] [GN:BAES]

[OR:

ESCHERICHIA COLI

]

[EC:2.7.3.—] [DE:SENSOR

PROTEIN BAFS,]

[SP:P30847:P76401]

Contig090G

25587511_c1_418

1127

5253

768

255

149

1.00E−08

gp:[GI:g3821849] [LN:AF019747]

[AC:AF019747] [PN:putative

beta 1,4-galactosyltransferase X]

[GN:X] [OR:

Escherichia coli

]

[DE:

Escherichia coli

heptosyl I

transferase C (C) gene, partialcds;

lipid A-core:surface polymer ligase

L (L), putativebeta1,4-

galactosyltransferase X (X), UDP-

galactose:(galactosyl) LPS

alpha 1,2-galactosyltransferase

W(W), Y (Y), UDP-

galactose:(glucosyl) LPSalpha1,2-

galactosyltransferase T (T), UDP-

glucose:(glucosyl)LPS alpha1,3-

glucosyltransferase O (O), P

(P),UDP-glucose:(heptosyl) LPS

alpha1,3-glucosyltransferase G(G),

and Q (Q) genes, complete cds;

and Kdo transferaseA (A) gene,

partial cds.]

Contig090G

25598192_f1_119

1128

5254

315

104

262

1.30E−22

gp:[GI:g902447] [LN:ECU24202]

[AC:U24202] [GN:ycil]

[OR:

Escherichia coli

]

[DE:

Escherichia coli

ECOR 50

(yciD) gene, partial cds, and

(yciC),(yciB), (yciA), membrane

protein (tonB), (ycil), putative

potassiumchannel (kch), and

cardiolipin synthase (cls) genes,

complete cds.]

Contig090G

2581667_c3_711

1129

5255

198

65

NO-HIT

Contig090G

26572806_c2_614

1130

5256

636

211

690

5.60E−68

gp:[GI:e1364016:g4138297]

[LN:PAAJ7615] [AC:AJ007615]

[PN:homoscrine-kinase isozyme]

[GN:thrH] [OR:

Pseudomonas

aeruginosa

] [DE:

Pseudomonas

aeruginosa

thrH gene.]

Contig090G

26648313_f2_188

1131

5257

1197

398

1406

7.50E−144

gp:[GI:g1857942]

[LN:PAU88653] [AC:U88653]

[PN:thiolase] [GN:phaA]

[OR:

Pseudomonas aeruginosa

]

[DE:

Pseudomonas aeruginosa

thiolase (phaA) gene, complete

cds.]

Contig090G

283402_f2_151

1132

5258

189

62

NO-HIT

Contig090G

2914050_f1_12

1133

5259

852

283

NO-HIT

Contig090G

2928165_f1_69

1134

5260

183

62

NO-HIT

Contig090G

29303276_f1_129

1135

5261

1263

420

NO-HIT

Contig090G

2947137_f2_250

1136

5262

225

74

NO-HIT

Contig090G

29977313_f2_125

1137

5263

279

92

NO-HIT

Contig090G

30134766_c3_696

1138

5264

597

198

302

7.30E−27

sp:[LN:3MGH_BACSU]

[AC:P94378] [GN:YXLJ]

[OR:

BACILLUS SUBTILIS

]

[EC:3.2.2.—] [DE:PUTATIVE 3-

METHYLADENINE DNA

GLYCOSYLASE,] [SP:P94378]

Contig090G

30257687_f2_189

1139

5265

465

154

173

3.40E−13

sp:[LN:PHNB_ECOLI]

[AC:P16681] [GN:PHNB]

[OR:

ESCHERICHIA COLI

]

[DE:PHNB PROTEIN]

[SP:P16681]

Contig090G

30273587_c1_425

1140

5266

702

233

545

1.30E−52

sp:[LN:BAER_ECOLI]

[AC:P30846] [GN:BAER]

[OR:

ESCHERICHIA COLI

]

[DE:TRANSCRIPTIONAL

REGULATORY PROTEIN

BAER] [SP:P30846]

Contig090G

30674188_c3_683

1141

5267

432

143

255

6.90E−22

sp:[LN:YAT3_STAAU]

[AC:P52080]

[OR:

STAPHYLOCOCCUS

AUREUS

] [DE:HYPOTHETICAL

16.6 KD PROTEIN IN ATL

5′REGION (ORF3)] [SP:P52080]

Contig090G

31260776_f2_209

1142

5268

642

213

317

1.90E−28

pir:[LN:D70046] [AC:D70046]

[PN:conserved hypothetical

protein yvqK] [GN:yvqK]

[OR:

Bacillus subtilis

]

Contig090G

31289087_c1_444

1143

5269

876

291

442

1.10E−41

pir:[LN:H70553] [AC:H70553]

[PN:probable mer protein]

[GN:mer] [OR:

Mycobacterium

tuberculosis

]

Contig090G

3162512_f3_353

1144

5270

897

298

NO-HIT

Contig090G

31801653_f3_372

1145

5271

318

105

NO-HIT

Contig090G

32048963_f2_222

1146

5272

1362

453

1462

8.70E−150

sp:[LN:SYD_ECOLI]

[AC:P21889] [GN:ASPS:TLS]

[OR:

ESCHERICHIA COLI

]

[EC:6.1.1.12] [DE:(ASPRS)]

[SP:P21889]

Contig090G

32236093_c1_510

1147

5273

1368

455

698

7.90E−69

sp:[LN:DNAB_ECOLI]

[AC:P03005]

[GN:DNAB:GROP:GRPA]

[OR:

ESCHERICHIA COLI

]

[EC:3.6.1.—] [DE:REPLICATIVE

DNA HELICASE,] [SP:P03005]

Contig090G

32453812_f2_210

1148

5274

720

239

221

2.80E−18

gp:[GI:e204673:g1279200]

[LN:AEODHABL] [AC:X91877]

[GN :orf1] [OR:

Ralstonia eutropha]

[DE:

A. eutrophus

odhA, odhB

odhL, ORF1 and ORF5 genes.]

Contig090G

32455040_f2_176

1149

5275

1125

374

247

7.40E−20

pir:[LN:C70415] [AC:C70415]

[PN:cation efflux system (czcB-

like)] [GN:czcB2] [OR:

Aquifex

aeolicus

]

Contig090G

32616267_f2_235

1150

5276

387

128

133

5.90E−09

gp:[GI:d1037221:g4063781]

[LN:AB008550] [AC:AB008550]

[OR:

Pseudomonas aeruginosa

phage phi CTX] [SR:

Pseudomonas

aeruginosa

phage phi CTX

(strain:phiCTX-c]

[DE:

Pseudomonas aeruginosa

phage phi CTX, complete genome

sequence.] [NT:orf9]

Contig090G

32690927_f2_216

1151

5277

576

191

145

3.10E−10

sp:[LN:YJBA_ECOLI]

[AC:P23896] [GN:YJBA]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 15.6 KD

PROTEIN IN PGI-XYLE

INTERGENIC REGION]

[SP:P23896]

Contig090G

32930_f3_322

1152

5278

876

291

407

5.40E−38

sp:[LN:YJJU_ECOLI]

[AC:P39407] [GN:YJJU]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 39.8 KD

PROTEIN IN OSMY-DEOC

INTERGENIC REGION (O357)]

[SP:P39407]

Contig090G

33218968_f1_25

1153

5279

1422

473

881

3.20E−88

pir:[LN:E70798] [AC:E70798]

[PN:hypothetical protein Rv3740c]

[GN:Rv3740c]

[OR:

Mycobacterium tuberculosis

]

Contig090G

33234587_f3_271

1154

5280

1389

462

666

1.90E−65

sp:[LN:DNAB_HAEIN]

[AC:P45256] [GN:DNAB:H11574]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:3.6.1.—]

[DE:REPLICATIVE DNA

HELICASE,] [SP:P45256]

Contig090G

3323515_f1_88

1155

5281

786

261

NO-HIT

Contig090G

33257707_c2_634

1156

5282

468

155

NO-HIT

Contig090G

3335943_c2_552

1157

5283

2769

922

924

1.70E−165

sp:[LN:GLNE_HAEIN]

[AC:P44419] [GN:GLNE:R10069]

[OR:

HAEMOPHILUS

INFLUENZAE] [EC:2.7.7.42]

[DE:SYNTHETASE

ADENYLYLTRANSFERASE)

(ATASE)] [SP:P44419]

Contig090G

33370676_f1_82

1158

5284

1485

494

865

1.60E−86

sp:[LN:YDIU_ECOLI]

[AC:P77649:P76904] [GN:YDIU]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 54.4 KD

PROTEIN IN AROH-NLPC

INTERGENIC REGION]

[SP:P77649:P76904]

Contig090G

33766453_c3_728

1159

5285

1113

370

992

5.50E−100

gp:[GI:g4378174] [LN:AF102543]

[AC:AF102543] [PN:unknown]

[OR:

Zymomonas mobilis

]

[DE:

Zymomonas mobilis 5,10-

methylenetetrahydrofolate

reductase (metF)gene, partial cds;

lipoprotein precursor (vaci),

ferredoxin-NADP+reductase (fpr),

succinic semialdehyde

dehydrogenase (gabD),thymidylate

synthetase (thyA), gluconate

permease (gntP), UTP-glucose-1-

phosphate uridyltransferase.

diaminopimelatedecarboxylase

(lysA), arginosuccinate lyase

(argH), NADH-dependentbutanol

dehydrogenase (yugJ), and

morphine 6-dehydrogenase

(mdh)genes, complete cds tRNA-

Ala gene, complete

sequence; aminopeptidase N

(pepN) gene, complete cds; and

unknown genes.] [NT:zm4orf8]

Contig090G

33832938_f2_236

1160

5286

540

179

360

5.20E−33

gp:[GI:d1037226:g4063786]

[LN:AB008550] [AC:AB008550]

[OR:

Pseudomonas aeruginosa

phage phi CTX] [SR:

Pseudomonas

aeruginosa

phage phi CTX

(strain:phiCTX-c]

[DE:

Pseudomonas aeruginosa

phage phi CTX, complete genome

sequence.] [NT:orf13; similar to R

gene of P2:tail completion]

Contig090G

34020910_f3_383

1161

5287

375

124

156

2.10E−11

gp:[GI:g2564977]

[LN:RCU23145] [AC:U23145]

[OR:

Rhodobacter capsulatus

]

[DE:

Rhodobacter capsulatus

Calvin cycle carbon dioxide

fixation operon:fructose-1,6-

/sedoheptulose-1,7-bisphosphate

aldolase (cbbA) gene, partial cds,

Form II ribulose-1,5-

bisphosphatecarboxytaseloxygenas

e (cbbM) gene, complete cds, and

Calvin cycleoperon: pentose-5-

phosphate-3-epimerase (cbbE),

phosphoglycolatephosphatase

(cbbZ), and cbbY genes, complete

cds.] [NT:hypothetical protein]

Contig090G

34032202_f1_113

1162

5288

297

98

NO-HIT

Contig090G

34064055_f2_131

1163

5289

423

140

NO-HIT

Contig090G

34103428_c2_632

1164

5290

378

125

NO-HIT

Contig090G

34189375_c2_533

1165

5291

309

102

NO-HIT

Contig090G

34260885_c3_710

1166

5292

522

173

102

0.00075

pir:[LN:S76259] [AC:S76259]

[PN:hypothetical protein]

[OR:Synechocystis sp.] [SR:PCC

6803, , PCC 6803] [SR:PCC 6803,]

Contig090G

34384625_f2_234

1167

5293

750

249

415

7.70E−39

gp:[GI:d1037217:g4063777]

[LN:AB008550] [AC:AB008550]

[OR:

Pseudomonas aeruginosa

phage phi CTX] [SR:

Pseudomonas

aeruginosa phage phi CTX

(strain:phiCTX-c]

[DE:

Pseudomonas aeruginosa

phage phi CTX, complete genome

sequence.] [NT:orf5; similar to M

of P2:terminase subunit]

Contig090G

34411542_c3_731

1168

5294

2532

843

NO-HIT

Contig090G

34453377_f1_41

1169

5295

930

309

NO-HIT

Contig090G

34563513_c1_387

1170

5296

372

123

119

3.40E−07

pir:[LN:E70526] [AC:E70526]

[PN:hypothetical protein Rv0324]

[GN:RvO324] [OR:

Mycobacterium

tuberculosis

]

Contig090G

34567177_f3_268

1171

5297

903

300

NO-HIT

Contig090G

34568762_c3_738

1172

5298

522

173

NO-HIT

Contig090G

34614066_c2_633

1173

5299

843

280

NO-HIT

Contig090G

34626_f3_384

1174

5300

1218

405

NO-HIT

Contig090G

35196965_c1_451

1175

5301

219

72

NO-HIT

Contig090G

35396891_c2_609

1176

5302

675

224

381

3.10E−35

gp:[GI:g606188] [LN:ECOUW67]

[AC:U18997] [OR:

Escherichia

coli

] [DE:

Escherichia coli

K-12

chromosomal region from 67.4 to

76.0 minutes.] [NT:ORF_f217;

orfE of ECMRED, uses 2nd start]

Contig090G

35442750_c1_477

1177

5303

213

70

NO-HIT

Contig090G

35963136_f3_314

1178

5304

1257

418

1088

3.70E−110

sp:[LN:RTCB_ECOLI]

[AC:P46850:P76690] [GN:RTCB]

[OR:ESCHERICHIA COLI]

[DE:RTCB PROTEIN]

[SP:P46850:P76690]

Contig090C

36024002_f2_248

1179

5305

375

124

316

2.40E−28

sp:[LN:SSB_ECOLI]

[AC:P02339]

[GN:SSB:EXRB:LEXC]

[OR:

ESCHERICHIA COLI

]

[DE:SINGLE-STRAND

BINDING PROTEIN (SSB)

(HELIX-DESTABILIZING

PROTEIN)] [SP:P02339]

Contig090G

36109677_c3_677

1180

5306

828

275

588

3.60E−57

sp:[LN:TRPA_PSESY]

[AC:P34816] [GN:TRPA]

[OR:

PSEUDOMONAS

SYRINGAE

] [EC:4.2.1.20]

[DE:TRYPTOPHAN SYNTHASE

ALPHA CHAIN,] [SP:P34816]

Contig090G

361 19087_c1_389

1181

5307

855

284

441

1.40E−41

sp:[LN:YCIV_HAEIN]

[AC:P44176] [GN:H11400]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

H11400] [SP:P44176]

Contig090G

36203563_f2_253

1182

5308

615

204

208

6.60E−17

pir:[LN:G64496] [AC:G64496]

[PN:hypothetical protein MJ1576]

[OR:

Methanococcus jannaschi

]

[MP:FOR 1551599-1552168]

Contig090G

3906268_f2_171

1183

5309

1221

406

1138

1.90E−115

sp:[LN:DAPE_HAEIN]

[AC:P44514] [GN:DAPE:H10102]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:3.5.1.18]

[DE:SUCCINYL-

DIAMINOPIMELATE

DESUCCINYLASE, (SDAP)]

[SP:P44514]

Contig090G

3906278_c1_421

1184

5310

1473

490

102

5.20E−05

gp:[GI:d1038520:g42400001]

[LN:AB017186] [AC:AB017186]

[PN:cardiolipin synthase] [GN:cls]

[OR:

Clostridium perfringens

]

[SR:

Clostridium perfringens

(strain:NCTC 8237) vegitative cell

DNA] [DE:

Clostridium

perfringens

genes of hem operon,

complete cds.]

Contig090G

3907318_c3_665

1185

5311

900

299

118

5.60E−12

pir:[LN:F71721] [AC:F71721]

[PN:hypothetical protein RP120]

[GN:RP120] [OR:

Rickettsia

prowazekii

]

Contig090G

3907517_c3_682

1186

5312

1284

427

NO-HIT

Contig090G

3907587_f3_294

1187

5313

198

65

NO-HIT

Contig090G

391551_c1_488

1188

5314

840

279

544

1.60E−52

sp:[LN:BACA_ECOLI]

[AC:P31054:P39203] [GN:BACA]

[OR:

ESCHERICHIA COLI

]

[EC:2.7.1.66] [DE:(EC 2.7.1.66)]

[SP:P31054:P39203]

Contig090G

3931302_f1_95

1189

5315

1014

337

879

5.20E−88

gp:[GI:d1037216:g4063776]

[LN:AB008550] [AC:AB008550]

[OR:

Pseudomonas aeruginosa

phage phi CTX] [SR:

Pseudomonas

aeruginosa

phase phi CTX

(strain:phiCTX-c]

[DE:

Pseudomonas aeruginosa

phage phi CTX, complete genome

sequence.] [NT:orf4; similar to N

of P2:major capsid protein]

Contig090G

3939702_c2_582

1190

5316

432

143

314

3.90E−28

sp:[LN:MSCL_ECOLI]

[AC:P23867] [GN:MSCL]

[OR:

ESCHERICHIA COLI

]

[DE:LARGE CONDUCTANCE

MECHANOSENSITIVE

CHANNEL] [SP:P23867]

Contig090G

3944068_f2_249

1191

5317

747

248

185

1.80E−14

pir:[LN:D64946] [AC:D64946]

[PN:probable DNA polymerase III

epsilon chain] [OR:

Escherichia

coli

]

Contig090G

3956512_c2_600

1192

5318

1224

407

570

2.90E−55

pir:[LN:E69783] [AC:E69783]

[PN:bicyclomycin resistance

protein homolog ydgK]

[GN:ydgK] [CL:bicyclomycin

resistance protein] [OR:

Bacillus

subtilis

]

Contig090G

4063132_f1_78

1193

5319

246

81

NO-HIT

Contig090G

4068768_c3_709

1194

5320

378

125

168

1.10E−12

gp:[GI:g1002863]

[LN:PDU34346] [AC:U34346]

[PN:unknown] [OR:

Paracoccus

denitrificans

] [DE:

Paracoccus

denitrificans

NAD-GSH-dependent

formaldehydedehydrogenase

(flhA), ClpP (clpP), S-

formylglutathione

hydrolase(fghA), PQQ-dependent

dehydrogenase large subunit

(xoxF), cytochrome c553i (cycB),

XoxJ (xoxJ), and XoxI (xoxI)

genes, complete cds.] [NT:orf1]

Contig090G

4079527_f3_309

1195

5321

195

64

NO-HIT

Contig090G

4103382_c2_620

1196

5322

306

101

NO-HIT

Contig090G

4116327_f3_373

1197

5323

2739

912

1612

1.10E−165

gp:[GI:d1037251:g4063811]

[LN:AB008550] [AC:AB008550]

[OR:

Pseudomonas aeruginosa

phage phi CTX] [SR:

Pseudomonas

aeruginosa

phage phi CTX

(strain:phiCTX-c]

[DE:

Pseudomonas aeruginosa

phage phi CTX, complete genome

sequence.] [NT:orf37]

Contig090G

411683_f2_238

1198

5324

945

314

706

1.10E−69

sp:[LN:VPJ_BPP2] [AC:P51767]

[GN:J] [OR:BACTERIOPHAGE

P2] [DE:BASEPLATE

ASSEMBLY PROTEIN J (GPJ)]

[SP:P51767]

Contig090G

4117138_c1_458

1199

5325

366

121

271

1.40E−23

sp:[LN:YEAO_ECOLI]

[AC:P76243] [GN:YEAO]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 14.2 KD

PROTEIN IN GAPA-RND

INTERGENIC REGION]

[SP:P76243]

Contig090G

4144067_f2_218

1200

5326

498

165

NO-HIT

Contig090G

4301677_f3_321

1201

5327

300

99

NO-HIT

Contig090G

4328193_f2_200

1202

5328

651

216

909

3.50E−91

gp:[GI:g3420603] [LN:AF075709]

[AC:AF0755709] [PN:LsfA]

[GN:lsfA] [OR:

Pseudomonas

putida

] [DE:

Pseudomonas putida

LsfA (lsfA), complete cds; and ssu

locus, complete sequence.]

Contig090G

433768_c3_706

1203

5329

474

157

NO-HIT

Contig090G

4378443_f3_313

1204

5330

1470

489

1638

1.90E−168

sp:[LN:LYSP_ECOLI]

[AC:P25737] [GN:LYSP:CADR]

[OR:

ESCHERICHIA COLI

]

[DE:LYSINE-SPECIFIC

PERMEASE] [SP:P25737]

Contig090G

439062_f2_150

1205

5331

1464

487

555

1.10E−53

gp:[GI:g598251]

[LN:MBOOMPE] [AC:L31788]

[PN:outer membrane protein E]

[OR:

Moraxella catarrhalis

]

[SR:

Moraxella catarrhalis

(strain

25240) DNA] [DE:

Moraxella

catarrhalis

outer membrane protein

E gene, complete cds.]

Contig090G

4392143_f1_121

1206

5332

504

167

NO-HIT

Contig090G

4426306_c1_446

1207

5333

1653

550

1880

4.40E−194

gp:[GI:g2565334] [LN:AF026066]

[AC:AF026066] [PN:sulfite

reductase] [GN cysl]

[OR:

Pseudomonas aeruginosa

]

[DE:

Pseudomonas aeruginosa

sulfite reductase (cysl) gene,

complete cds.] [NT:hemoprotein

subunit]

Contig090G

4462838_f3_312

1208

5334

1023

340

475

3.40E−45

sp:[LN:YJJT_HAEIN]

[AC:P44453] [GN:H10012]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

H10012] [SP:P44453]

Contig090G

4503776_f1_21

1209

5335

750

249

446

4.00E−42

pir:[LN:A32667]

[AC:A32667:A54055]

[PN:NAD(P)H dehydrogenase

(quinone), 2] [GN:NMOR2]

[CL:NAD(P)H dehydrogenase

(quinone) 2] [OR:Homo sapiens]

[SR:, man] [EC:1.6.99.2]

[MP:6pter-6q12]

Contig090G

4537518_c3_666

1210

5336

765

254

234

1.20E−19

pir:[LN:A70081] [AC:A70081]

[PN:conserved hypothetical

protein yxkH] [GN:yxkH]

[OR:

Bacillus subtilis

]

Contig090G

4539193_f2_155

1211

5337

1482

493

1470

1.20E−150

sp:[LN:YBL3_MORCA]

[AC:Q49092] [OR:

MORAXELLA

CATARRHALIS

]

[DE:HYPOTHETICAL 46.4 KD

PROTEIN IN BLOR-1 3′REGION

(ORF3)] [SP:Q49092]

Contig090G

4687518_f2_187

1212

5338

525

174

125

4.10E−08

sp:[LN:ECPB_EIKCO]

[AC:P35646] [GN:ECPB]

[OR:

EIKENELLA CORRODENS

]

[DE:FIMBRIAL PROTEIN ECPB

PRECURSOR (PILIN)]

[SP:P35646]

Contig090G

4689202_c3_676

1213

5339

996

331

NO-HIT

Contig090G

4724168_f2_192

1214

5340

195

64

NO-HIT

Contig090G

47642_f1_106

1215

5341

342

113

NO-HIT

Contig090G

4788267_f2_242

1216

5342

2460

819

515

8.10E−47

gp:[GI:g3139112] [LN:AF063097]

[AC:AF063097:J02474:X02300:X

02301:M58023:M13202:L29304:

X87173:M6467 7] [PN:gpT]

[GN:T] [FN:essential tail protein;

putative tail length]

[OR:Bacteriophage P2]

[DE:Bacteriophage P2, complete

genome.]

Contig090G

4798588_c2_566

1217

5343

522

173

NO-HIT

Contig090G

4875313_f2_254

1218

5344

339

112

243

1.30E−20

sp:[LN:YAJC_ECOLI]

[AC:P19677] [GN:YAJC]

[OR:

ESCHERICHIA

COLI

:

SHIGELLA FLEXNERI

]

[DE:HYPOTHETICAL 11.9 KD

PROTEIN IN TGT-SECD

INTERGENIC REGION (ORF12)]

[SP:P19677]

Contig090G

4881313_c3_698

1219

5345

1119

372

666

1.90E−65

gp:[GI:e1362560:g4106687]

[LN:SPBC23G7] [AC:AL035065]

[PN:putative nadh-dependent

flavin oxidoreductase]

[GN:SPBC23G7.10c]

[OR:

Schizosaccharomyces pombe

]

[SR:fission yeast] [DE:S pombe

chromosome II cosmid c23G7.]

[NT:SPBC23G7.10c, len:395,

SIMILARITY:Bacillus]

Contig090G

4881567_c3_688

1220

5346

363

120

150

9.30E−11

pir:[LN:A48905]

[AC:A48905:S32181:S25583]

[PN:small multidrug export protein

qacE:multidrug importer]

[GN:qacE] [CL:sugE protein]

[OR:

Klebsiella pneumoniae

]

Contig090G

4901552_c3_697

1221

5347

2145

714

1617

3.30E−166

pir:[LN:F64897] [AC:F64897]

[PN:hypothetical protein b1451

precursor] [CL:tonB-dependent

receptor amino-terminal

homology] [OR:

Escherichia coli

]

Contig090G

4937583_c2_581

1222

5348

1851

616

2223

2.00E−230

sp:[LN:TYPA_HAEIN]

[AC:P44910] [GN:TYPA:H10864]

[OR:

HAEMOPHILUS

INFLUENZAE] [DE:GTP-

BINDING PROTEIN TYPA/BIPA

HOMOLOG] [SP:P44910]

Contig090G

4964750_f3_284

1223

5349

1008

335

159

1.60E−21

gp:[GI:g2541936] [LN:PSU27310]

[AC:U27310] [PN:unknown]

[OR:

Pseudomonas syringae

]

[DE:

Pseudomonas syringae

phaseolotoxin gene cluster,

complete sequence.] [NT:ORF6;

similar to

Pseudomonas syringae

fatty acid]

Contig090G

5078336_f2_127

1224

5350

447

148

NO-HIT

Contig090G

5115902_c3_664

1225

5351

1341

446

328

8.80E−29

pir:[LN:S75662] [AC:S75662]

[PN:sensor transduction histidine

kinase sl11871:protein

sl11871:protein sl11871]

[OR:Synechocystis sp.] [SR:PCC

6803, , PCC 6803] [SR:PCC 6803,]

Contig090G

5117137_f3_379

1226

5352

918

305

508

1.10E−48

pir:]LN:C64906] [AC:C64906]

[PN:probable membrane protein

b1520] [OR:

Escherichia coli

]

Contig090G

523382_c1_388

1227

5353

348

115

NO-HIT

Contig090G

5261500_c1_427

1228

5354

672

223

945

5.30E−95

sp:[LN:TRPF_ACICA]

[AC:P16923] [GN:TRPF]

[OR:

ACINETOBACTER

CALCOACETICUS

]

[EC:5.3.1.24] [DE:N-(5′-

PHOSPHORIBOSYL)ANTHRAN

ILATE ISOMERASE, (PRA1)]

[SP:P16923]

Contig090G

5289077_f3_363

1229

5355

210

69

199

6.00E−16

gp:[GI:d1037220:g4063780]

[LN:AB008550] [AC:AB008550]

[OR:

Pseudomonas aeruginosa

phage phi CTX] [SR:

Pseudomonas

aeruginosa

phage phi CTX

(strain:phiCTX-c]

[DE:

Pseudomonas aeruginosa

phage phi CTX, complete genome

sequence.] [NT:orf8; similar to X

gene of P2]

Contig090G

548502_f2_158

1230

5356

768

255

NO-HIT

Contig090G

551553_c3_730

1231

5357

2004

667

NO-HIT

Contig090G

56317_f1_81

1232

5358

654

217

340

6.80E−31

pir:[LN:S52745] [AC:S52745]

[PN:stearoyl-CoA desaturase,:delta

9-fatty acid desaturase] [GN:Ole1]

[CL:yeast stearoyl-CoA

desaturase:cytochrome b5 core

homology:stearoyl-CoA desaturase

homology] [OR:

Ajellomyces

capsulata

:

Histoplasma capsulatum

]

[EC:1.14.99.5]

Contig090G

56630_c2_584

1233

5359

927

308

228

5.00E−19

sp:[LN:YWKB_BACSU]

[AC:P45869] [GN:YWKB]

[OR:

BACILLUS SUBTILIS

]

[DE:HYPOTHETICAL 33.6 KD

PROTEIN IN TDK-PRFA

INTERGENIC REGION]

[SP:P45869]

Contig090G

5890952_c2_514

1234

5360

438

145

665

2.50E−65

sp:[LN:THI3_CORNE]

[AC:P52228]

[OR:

CORYNEBACTERIUM

NEPHRIDII

]

[DE:THIOREDOXIC C-3]

[SP:P52228]

Contig090G

5995666_f1_37

1235

5361

2325

774

1871

4.00E−193

sp:[LN:YCCS_ECOLI]

[AC:P75870] [GN:YCCS]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 82.0 KD

PROTEIN IN SULA-HEAD

INTERGENIC REGION]

[SP:P75870]

Contig090G

6054750_c3_659

1236

5362

186

61

NO-HIT

Contig090G

6064800_f1_29

1237

5363

327

108

145

3.10E−10

pir:[LN:D70484] [AC:D70484]

[PN:glutamyl-tRNA (Gln)

amidotransferase subunit C]

[GN:gatC] [CL:probable glu-tRNA

amidotransferase C chain]

[OR:

Aquifex aeolicus

]

Contig090G

6367688_c2_608

1238

5364

1050

349

1161

6.80E−118

sp:[LN:MREB_ECOLI]

[AC:P13519:P76678]

[GN:MREB:ENVB:RODY]

[OR:

ESCHERICHIA COLI

]

[DE:ROD SHAPE-

DETERMINING PROTEIN

MREB] [SP:P13519:P76678]

Contig090G

6437638_f2_169

1239

5365

189

62

NO-HIT

Contig090G

6542752_c3_651

1240

5366

891

296

161

1.20E−09

gp:[GI:g4530501] [LN:AF125163]

[AC:AF125163] [PN:unknown]

[FN:involved in phage exclusion]

[OR:Bacteriophage K139]

[DE:Bacteriophage K139

lysogenic/lytic control region.]

[NT:orf2]

Contig090G

6646903_f3_377

1241

5367

1164

387

NO-HIT

Contig090G

683411_c1_512

1242

5368

192

64

NO-HIT

Contig090G

6836001_f1_117

1243

5369

996

331

621

1.10E−60

sp:[LN:SECF_HAEIN]

[AC:P44590] [GN:SECF:H10239]

[OR:

HAEMOPHILUS

INFLUENZAE

] [DE:PROTEIN-

EXPORT MEMBRANE

PROTEIN SECF] [SP:P44590]

Contig090G

7063812_f1_10

1244

5370

237

78

NO-HIT

Contig090G

7161341_f2_221

1245

5371

474

157

400

5.40E−37

sp:[LN:SYD_AQUAE]

[AC:O67589] [GN:ASPS]

[OR:

AQUIFEX AEOLICUS

]

[EC:6.1.1.12] [DE:(ASPRS)]

[SP:O67589]

Contig090G

7166258_f2_201

1246

5372

597

198

104

0.00092

gp:[GI:g2702271]

[LN:ATAC003033]

[AC:AC003033] [GN:T21L14.10]

[OR:

Arabidopsis thaliana

]

[SR:thale cress] [DE:

Arabidopsis

thaliana

chromosome II BAC

T21L14 genomic

sequence, complete sequence.]

[NT:unknown protein]

Contig090G

800_c3_663

1247

5373

264

87

NO-HIT

Contig090G

817192_f1_49

1248

5374

750

249

150

2.00E−16

sp:[LN:Y466_HAEIN]

[AC:P44000] [GN:HI0466]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

HI0466] [SP:P44000]

Contig090G

820327_c1_417

1249

5375

1029

342

NO-HIT

Contig090G

865628_f2_141

1250

5376

315

104

NO-HIT

Contig090G

956885_c1_494

1251

5377

213

70

NO-HIT

Contig090G

975063_c3_729

1252

5378

1404

467

NO-HIT

Contig090G

8767963_f2_262

1253

5379

1428

475

484

3.80E−46

sp:[LN:MERA_STAAU]

[AC:P08663] [GN:MERA]

[OR:

STAPHYLOCOCCUS

AUREUS

] [EC:1.16.1.1]

[DE:MERCURIC REDUCTASE,

(HG(II) REDUCTASE)]

[SP:P08663]

Contig090G

9772687_f1_99

1254

5380

693

230

261

1.60E−22

gp:[GI:d1037229:g4063789]

[LN:AB008550] [AC:AB008550]

[OR:

Pseudomonas aeruginosa

phage phi CTX] [SR:

Pseudomonas

aeruginosa

phage phi CTX

(strain:phiCTX-c]

[DE:

Pseudomonas aeruginosa

phage phi CTX, complete genome

sequence.] [NT:orf16; similar to V

gene of P2:baseplate]

Contig090G

9798433_f3_328

1255

5381

936

311

434

7.50E−41

sp:[LN:YU09_MYCTU]

[AC:Q50665] [GN:MTCY339.09]

[OR:

MYCOBACTERIUM

TUBERCULOSIS

]

[DE:HYPOTHETICAL 34.4 KD

PROTEIN CY339.09]

[SP:Q50665]

Contig090G

9806532_c2_555

1256

5382

1095

364

350

4.90E−35

pir:[LN:S42434] [AC:S42434]

[PN:hypothetical protein]

[OR:

Neisseria meningitidis

]

Contig090G

9869007_f2_260

1257

5383

492

163

419

2.90E−39

sp:[LN:YAJQ_HAEIN]

[AC:P44096] [GN:H11034]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

H11034] [SP:P44096]

Contig090G

9958137_c1_479

1258

5384

1014

337

427

4.10E−40

pir:[LN:H69874] [AC:H69874]

[PN:conserved hypothetical

protein ylbK] [GN:ylbK]

[OR:

Bacillus subtilis

]

Contig090G

9979557_f3_361

1259

5385

843

280

542

2.70E−52

gp:[GI:d1037215:g4063775]

[LN:AB008550] [AC:AB008550]

[OR:

Pseudomonas aeruginosa

phage phi CTX] [SR:

Pseudomonas

aeruginosa

phage phi CTX

(strain:phiCTX-c]

[DE:

Pseudomonas aeruginosa

phage phi CTX, complete genome

sequence.] [NT:orf3; similar to O

gene of P2:presumed capsid]

Contig092G

10276687_f2_84

1260

5386

894

297

427

4.10E−40

sp:[LN:DAPA_BACSU]

[AC:Q0496] [GN:DAPA]

[OR:

BACILLUS SUBTILIS

]

[EC:4.2.1.52] [DE:PROTEIN 81)

(VEG81)] [SP:Q04796]

Contig092G

10740637_c3_246

1261

5387

222

73

84

0.00092

sp:[LN:YSMA_BACSU]

[AC:P11469] [GN:YSMA]

[OR:

BACILLUS SUBTILIS

]

[DE:HYPOTHETICAL 17.1 KD

PROTEIN IN SDHB-GERE

INTERGENIC REGION]

[SP:P11469]

Contig092G

1178518_c2_203

1262

5388

951

316

942

1.10E−94

sp:[LN:HEM3_PROM1]

[AC:Q59684] [GN:HEMC]

[OR:

PROTEUS MIRABILIS

]

[EC:4.3.1.8] [DE:SYNTHASE)

(HMBS) (PRE-

UROPORPHYRINOGEN

SYNTHASE)] [SP:Q59684]

Contig092G

1182842_f1_18

1263

5389

933

310

742

1.70E−73

sp:[LN:XERD_ECOLI]

[AC:P21891] [GN:XERD:XPRB]

[OR:

ESCHERICHIA COLI

]

[DE:INTEGRASE/RECOMBINA

SE XERD] [SP:P21891]

Contig092G

13675842_c3_245

1264

5390

786

261

207

8.50E−17

sp:[LN:HEM4_PSEAE]

[AC:P48246] [GN:HEMD]

[OR:

PSEUDOMONAS

AERUGINOSA] [EC:4.2.1.75]

[DE:III COSYNTHETASE]

(HYDROXYMETHYLBILANE

HYDROLYASE [CYCLIZING])]

[SP:P48246]

Contig092G

13681533_c3_221

1265

5391

663

220

619

1.90E−60

sp:[LN:RISA_PHOPO]

[AC:P51961] [GN:RIBE]

[OR:

PHOTOBACTERIUM

PHOSPHOREUM

] [EC:2.5.1.9]

[DE:RIBOFLAVIN SYNTHASE

ALPHA CHAIN.] [SP:P51961]

Contig092G

13836555_c3_220

1266

5392

1335

444

279

1.00E−21

sp:[LN:MTFl_FLAOK]

[AC:P14871] [GN:MFOKI]

[OR:

FLAVOBACTERIUM

OKEANOKOITES

] [EC:2.1.1.72]

[DE:METHYLTRANSFERASE

FOKI) (M. FOKI)] [SP:P14871]

Contig092G

13866012_f2_79

1267

5393

669

222

121

0.00013

sp:[LN:NFM_CHICK]

[AC:P16053] [GN:NEFM]

[OR:

GALLUS GALLUS

]

[DE:NEUROFILAMENT

TRIPLET M PROTEIN (160 KD

NEUROFILAMENT PROTEIN)

(NF-M)] [SP:P16053]

Contig092G

1460875_c3_247

1268

5394

459

152

233

1.50E−19

gp:[GI:g3241975] [LN:SSU85710]

[AC:U85710] [PN:transposase]

[OR:

Sulfolobus solfataricus

]

[DE:

Sulfolobus solfataricus

insertion element ISC1041,

transposasegene, complete cds.]

Contig092G

14647126_f2_83

1269

5395

864

287

208

8.70E−15

sp:[LN:HTS_DROME]

[AC:Q02645] [GN:HTS]

[OR:

DROSOPHILA

MELANOGASTER

] [SR:,FRUIT

FLY] [DE:HU-LI TAI SHAO

PROTEIN] [SP:Q02645]

Contig092G

14879033_f3_103

1270

5396

1440

479

1269

2.50E−129

pir:[LN:C69589] [AC:C69589]

[PN:argininosuccinate lyase argH]

[GN:argH] [CL:argininosuccinate

lyase] [OR:

Bacillus subtilis

]

Contig092G

15136268_c2_185

1271

5397

1413

470

1347

1.30E−137

gp:[GI:g3136068] [LN:AF005275]

[AC:AF00527] [PN:AmtB]

[GN:amtB] [FN:ammonium

transporter] [OR:

Azospirillum

brasilense

] [DE:

Azospirillum

brasilense

ammonium transporter

AmtB (amtB) gene, complete cds.]

Contig092G

15823527_c1_170

1272

5398

921

306

340

6.80E−31

sp:[LN:YWFM_BACSU]

[AC:P39649] [GN:YMFM:IPA-

91D] [OR:

BACILLUS SUBTILIS

]

[DE:HYPOTHETICAL 31.3 KD

PROTEIN IN PTA 3′REGION]

[SP:P39649]

Contig092G

16046937_c2_204

1273

5399

894

297

NO-HIT

Contig092G

16101051_f1_23

1274

5400

219

72

NO-HIT

Contig092G

16484587_f3_139

1275

5401

231

77

NO-HIT

Contig092G

16495635_f1_53

1276

5402

228

75

NO-HIT

Contig092G

16836428_f3_117

1277

5403

414

137

174

2.70E−13

gp:[GI:g2984772] [LN:AF054622]

[AC:AF054622] [PN:DNA

polymerase holoenzyme chi

subunit] [GN:holC]

[OR:

Pseudomonas aeruginosa

]

[DE:

Pseudomonas aeruginosa

PhpA (phpA) and DNA

polymerase holoenzymechi subunit

(holC) genes, complete cds.]

[NT:HolC; similar to

Escherichia

coli

HolC]

Contig092G

16909683_f2_78

1278

5404

1464

487

1145

3.40E−116

gp:[GI:g2984771] [LN:AF054622]

[AC:AF054622] [PN:PhpA]

[GN:phpA] [OR:

Pseudomonas

aeruginosa

] [DE:

Pseudomonas

aeruginosa

PhpA (phpA) and DNA

polymerase holoenzymechi subunit

(holC) genes, complete cds.]

[NT:alternative putative start

codon indicated at nt]

Contig092G

17165_f1_6

1279

5405

1140

379

NO-HIT

Contig092G

20714717_c1_165

1280

5406

264

87

NO-HIT

Contig092G

21507890_f3_131

1281

5407

789

262

353

2.90E−32

sp:[LN:YEGX_ECOLI]

[AC:P76421:O08480]

[GN:YEGX] [OR:

ESCHERICHIA

COLI] [DE:HYPOTHETICAL

32.0 KD PROTEIN IN FBAB-

THID INTERGENIC REGION]

[SP:P76421:O08480]

Contig092G

21520937_c2_196

1282

5408

1416

471

860

5.40E−86

sp:[LN:MURD_ECOLI]

[AC:P14900] [[GN:MURD]

[OR:

ESCHERICHIA COLI

]

[EC:6.3.2.9] [DE:ADDING

ENZYME)] [SP:P14900]

Contig092G

22447077_c3_224

1283

5409

1185

394

484

3.80E−46

pir:[LN:F64688] [AC:F64688]

[PN:proteinase,] [CL:carboxyl-

terminal processing proteinase]

[OR:

Helicobacter pylori

] [EC:3.4.—

.—]

Contig092G

22864757_f3_122

1284

5410

267

88

88

0.00035

sp:[LN:YQIC_ECOLI]

[AC:Q46868] [GN:YQIC]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 13.8 KD

PROTEIN IN RIBB-GLGS

INTERGENIC REGION]

[SP:Q46868]

Contig092G

23454376_c2_181

1285

5411

690

229

614

6.30E−60

pir:[LN:H65165] [AC:H65165]

[PN:hypothetical 22.0 kD protein

in rph-gmk intergenic region]

[GN:yicG] [CL:hypothetical

protein b1832] [OR:

Escherichia

coli]

Contig092G

23460285_c3_213

1286

5412

2262

753

2288

2.60E−237

gp:[GI:d1038141:g4176379]

[LN:AB003428] [AC:AB003428]

[PN:topoisomerase IV subunit]

[GN:parC] [OR:

Pseudomonas

aeruginosa

] [SR:

Pseudomonas

aeruginosa

DNA]

[DE:

Pseudomonas aeruginosa

parC

gene for topoisomerase IV

subunit, complete cds.]

Contig092G

23536555_f3_112

1287

5413

1590

529

538

7.10E−52

sp:[LN:PILS_PSEAE]

[AC:P33639]

[OR:

PSEUDOMONAS

AERUGINOSA

] [EC:2.7.3.—]

[DE:SENSOR PROTEIN PILS,]

[SP:P33639]

Contig092G

23629587_f1_44

1288

5414

1068

355

697

1.00E−68

sp:[LN:DINP_ECOLI]

[AC:Q47155:Q47683] [GN:DINP]

[OR:

ESCHERICHIA COLI

]

[DE:DNA-DAMAGE-

INDUCIBLE PROTEIN P]

[SP:Q47155:Q47683]

Contig092G

23629715_f2_81

1289

5415

1500

499

1201

3.90E−122

sp:[LN:YIFB_ECOLI]

[AC:P22787] [GN:YIFB]

[OR:

ESCHERICHIA COLI

]

[DE:(F516) [CONTAINS: ORF I]]

[SP:P22787]

Contig092G

23632893_f2_93

1290

5416

639

212

425

6.70E−40

pir:[LN:D70033] [AC:D70033]

[PN:conserved hypothetical

protein yvdD] [GN:yvdD]

[CL:yeast conserved hypothetical

protein YJL055w] [OR:

Bacillus

subtilis

]

Contig092G

23709417_c3_217

1291

5417

876

291

NO-HIT

Contig092G

23834430_f1_35

1292

5418

192

63

NO-HIT

Contig092G

24219393_f2_85

1293

5419

1329

442

738

4.60E−73

gp:[GI:d1023129:g2425172]

[LN:AB006797] [AC:AB006797]

[PN:OprE3] [GN:oprQ]

[OR:

Pseudomonas aeruginosa

]

[SR:

Pseudomonas aeruginosa

(strain:PAO1) DNA]

[DE:

Pseudomonas aeruginosa

oprQ gene for OprE3, complete

cds.]

Contig092G

24257888_f1_8

1294

5420

660

219

347

1.20E−31

sp:[LN:YQIE_ECOLI]

[AC:P36651] [GN:YQIE]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 23.7 KD

PROTEIN IN ICC-TOLC

INTERGENIC REGION (F209)]

[SP:P36651]

Contig092G

24395386_f1_1

1295

5421

186

61

NO-HIT

Contig092G

24611093_c1_172

1296

5422

1152

383

493

4.20E−47

gp:[GI:g1542980]

[LN:PAU52431] [AC:U52431]

[PN:AlgZ] [GN:algZ] [FN:AlgR-

cognate sensor, negative regulator

of] [OR:

Pseudomonas aeruginosa

]

[SR:

Pseudomonas aeruginosa

strain=PAO568]

[DE:

Pseudomonas aeruginosa

AlgR-cognate sensor AlgZ (algZ)

gene, complete cds.] [NT:Sensor of

two-component system;

homologous to S.]

Contig092G

24820307_c3_223

1297

5423

1566

521

1710

4.60E−176

sp:[LN:PMGI_PSESM]

[AC:P52832] [GN:PGM]

[OR:

PSEUDOMONAS

SYRINGAE] [EC:5.4.2.1]

[DE:(EC 5.4.2.1)

(PHOSPHOGLYCEROMUTASE)

(BPG-INDEPENDENT PGAM)]

[SP:P52832]

Contig092G

25407843_c2_199

1298

5424

252

83

NO-HIT

Contig092G

25556660_f2_65

1299

5425

564

187

495

2.60E−47

sp:[LN:DKSA_ECOLI]

[AC:P18274] [GN:DKSA]

[OR:

ESCHERICHIA COLI

]

[DE:DNAK SUPPRESSOR

PROTEIN] [SP:P18274]

Contig092G

25595275_f1_21

1300

5426

1326

441

1141

9.00E−116

sp:[LN:DHOM_PSEAE]

[AC:P29365] [GN:HOM]

[OR:

PSEUDOMONAS

AERUGINOSA] [EC:1.1.1.3]

[DE:HOMOSERINE

DEHYDROGENASE, (HDH)]

[SP:P29365]

Contig092G

258_c2_180

1301

5427

495

164

397

6.20E−37

sp:[LN:YCHJ_HAEIN]

[AC:P44609] [GN:H10277]

[OR:

HAEMOPHILUS

INFLUENZAE]

[DE:HYPOTHETICAL PROTEIN

H10277] [SP:P44609]

Contig092G

26843753_f2_74

1302

5428

1434

477

1153

4.80E−117

pir:[LN:S26601]

[AC:S33674:S26601]

[PN:transcription activator pilR]

[CL:nitrogen assimilation

regulatory protein ntrC:response

regulator homology:RNA

polymerase sigma factor

interaction domain homology]

[OR:

Pseudomonas aeruginosa

]

Contig092G

29464153_c2_192

1303

5429

1062

353

534

1.90E−51

sp:[LN:PBP5_PSEAE]

[AC:P72161] [GN:PBPG]

[OR:

PSEUDOMONAS

AERUGINOSA

] [EC:3.4.99.—]

[DE:ENDOPEPTIDASE), (DD-

ENDOPEPTIDASE)] [SP:P72161]

Contig092G

31796917_f2_73

1304

5430

771

256

614

6.30E−60

gp:[GI:g472403] [LN:PSEMETH]

[AC:L29642] [PN:response

regulator/transcription activator]

[OR:

Pseudomonas fluorescens

]

[SR:

Pseudomonas fluorescens

(strain BL915) DNA]

[DE:

Pseudomonas fluorescens

methyltransferase gene, sensor

kinase

gene, phosphatidylglycerophosphat

e synthse (pgsA) gene, UVR

excinucleasesubunit C (uvrC)

gene, response

regulator/transcription

activatorgene, complete cds.]

[NT:homology with uvrY of

E.

coli

and gacA of P.]

Contig092G

3182827_c1_173

1305

5431

741

246

570

2.90E−55

sp:[LN:ALGR_PSEAE]

[AC:P26275] [GN:ALGR]

[OR:

PSEUDOMONAS

AERUGINOSA

] [DE:POSITIVE

ALGINATE BIOSYNTHESIS

REGULATORY PROTEIN]

[SP:P26275]

Contig092G

31910816_f1_46

1306

5432

339

112

NO-HIT

Contig092G

33694512_c2_179

1307

5433

1620

539

1193

2.80E−121

pir:[LN:F64972] [AC:F64972]

[PN:hypothetical protein b2063]

[OR:

Escherichia coli

]

Contig092G

3376637_c2_175

1308

5424

2439

812

1425

3.60E−148

sp:[LN:YGIQ_ECOLI]

[AC:Q46861] [GN:YGIQ]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 46.9 KD

PROTEIN IN METC-SUFI

INTERGENIC REGION]

[SP:Q46861]

Contig092G

3412750_f2_87

1309

5435

399

132

NO-HIT

Contig092G

34265631_c2_190

1310

5436

1119

372

420

2.30E−39

sp:[LN:YJGP_ECOLI]

[AC:P39340] [GN:YJGP]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 40.4 KD

PROTEIN IN PEPA-GNTV

INTERGENIC REGION (O366)]

[SP:P39340]

Contig092G

3526587_c2_184

1311

5437

375

124

482

6.10E−46

gp:[GI:g2735324]

[LN:AVU91902] [AC:U91902]

[PN:PII-protein] [GN:glnB]

[OR:

Azotobacter vinelandii

]

[DE:

Azotobacter vinelandii

PII-

protein (glnB) and

methylammoniumtransport protein

(amtB) genes, complete cds.]

Contig092G

35272812_c3_218

1312

5438

1476

491

495

2.60E−47

pir:[LN:G69825] [AC:G69825]

[PN:transcription regulator GntR

family homolog yhdl] [GN:yhdl]

[CL:hypothetical protein b1439]

[OR:

Bacillus subtilis

]

Contig092G

35820917_c2_195

1313

5439

1902

633

1654

3.90E−170

gp:[GI:g3128348] [LN:AF010496]

[AC:AF010496] [PN:ferrous iron

transport protein b]

[OR:

Rhodobacter capsulatus

]

[DE:

Rhodobacter capsulatus

strain

SB1003, partial genome.]

Contig092G

36211402_f2_64

1314

5440

831

276

441

1.40E−41

sp:[LN-ICC_HAEIN]

[AC:P44685] [GN:ICC:H10399]

[OR:

HAEMOPHILUS

INFLUENZAE

] [DE:ICC

PROTEIN HOMOLOG]

[SP:P44685]

Contig092G

36348800_c1_141

1315

5441

243

80

NO-HIT

Contig092G

36538892_c1_144

1316

5442

420

139

151

7.30E−11

sp:[LN:YBBI_ECOLI]

[AC:P77565] [GN:YBBI]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL

TRANSCRIPTIONAL

REGULATOR IN USHA-TESA

INTERGENIC REGION]

[SP:P77565]

Contig092G

3906542_f3_132

1317

5443

363

120

235

9.10E−20

gp:[GI:g2407234] [LN:AF017750]

[AC:AF017750] [GN:hypol 17]

[OR:

Haemophilus ducreyi

]

[DE:

Haemophilus ducreyi

cytochrome C-type biogenesis

protein (ccmH), recombinational

DNA repair protein (rccR),

manganese superoxidedismutase

(sodA), and CitG protein homolog

(citG) genes, completecds.]

[NT:simiiar to

Haemophilus

influenzae

product encoded]

Contig092G

3990718_f1_109

1318

5444

825

274

376

1.00E−34

gp:[GI:g3135321] [LN:AF057031]

[AC:AF057031] [PN:putative

thiol:disulfide interchange protein]

[GN:dsbC] [OR:

Pseudomonas

aeruginosa

] [DE:

Pseudomonas

aeruginosa

putative thiol:disulfide

interchange proteinprecursor

(dsbC) gene, complete cds.]

]NT:DsbC]

Contig092G

4039053_c3_236

1319

5445

591

196

211

3.20E−17

gp:[GI:g3293540] [LN:AF072709]

[AC:AF072709] [PN:putative

transcriptional regulator]

[OR:

Streptomyccs lividans

]

[DE:

Streptomyces lividans

amplifiable element AUD4:

putativetranscriptional regulator,

putative ferredoxin, putative

cytochromeP450 oxidoreductase,

and putative oxidoreductase genes,

completecds; and unknown genes.]

[NT:ORF2; similar to

transcriptional repressor]

Contig092G

4065686_c3_212

1320

5446

1371

456

546

1.90E−104

pir:[LN:C69757] [AC:C69757]

[PN:transporter homolog ycel]

[GN:ycel] [OR:

Bacillus subtilis

]

Contig092G

4086693_c2_205

1321

5447

1203

400

NO-HIT

Contig092G

4173813_c2_197

1322

5448

1206

401

804

4.60E−80

sp:[LN:FTSW_ECOLI]

[AC:P16457] [GN:FTSW]

[OR:

ESCHERICHIA COLI

]

[DE:CELL DIVISION PROTEIN

FTSW] [SP:P16457]

Contig092G

4182816_c2_182

1323

5449

543

180

642

6.80E−63

pir:[LN:PWEC]

[AC:A27648:S56452:E65234]

[PN:inorganic

pyrophosphatase,:pyrophosphate

phosphohydrotase] [GN:ppa]

[CL:inorganic pyrophosphatase]

[OR:

Escherichia coli

] [EC:3.6.1.1]

[MP:100 min]

Contig092G

4485693_c3_208

1324

5450

1008

335

1061

2.70E−107

sp:[LN:SRPG_SYNP7]

[AC:Q59966] [GN:SRPG]

[OR:SYNECHOCOCCUS SP]

[SR:PCC 7942,ANACYSTIS

NIDUI.ANS R2] [EC:4.2.99.8]

[DE:SULFHYDRYLASE) (O-

ACETYLSERINE (THIOL)-

LYASE) (CSASE)] [SP:Q59966]

Contig092G

4509688_f3_118

1325

5451

222

73

NO-HIT

Contig092G

4687890_c3_240

1326

5452

777

258

704

1.80E−69

pir:[LN:565576]

[AC:S68596:S65576]

[PN:negative regulator PhoU]

[GN:phoU] [CL:phoU protein]

[OR:

Pseudomonas aeruginosa

]

Contig092G

4692502_c1_145

1327

5453

1293

430

NO-HIT

Contig092G

4742153_c1_154

1328

5454

489

162

449

1.90E−42

sp:[LN:YBAD_ECOLI]

[AC:P25538] [GN:YBAD]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 17.2 KD

PROTEIN IN TSX-RIBG

INTERGENIC REGION (ORF1)]

[SP:P25538]

Contig092G

4859802_c1_140

1329

5455

567

188

158

1.30E−11

sp:[LN:AAC2_MYCFO]

[AC:Q49157] [GN:AAC]

[OR:

MYCOBACTERIUM

FORTUITUM

] [EC:2.3.1.—]

[DE:AMINOGLYCOSIDE 2′-N-

ACETYLTRANSFERASE,

(AAC(2′)-IB)] [SP:Q49157]

Contig092G

4879443_f3_104

1330

5456

279

92

216

9.40E−18

sp:[LN:YGGX_HAEIN]

[AC:P44048] [GN:H10760]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

H10760] [SP:P44048]

Contig092G

4880255_c3_210

1331

5457

540

179

NO-HIT

Contig092G

4884682_c3_239

1332

5458

1350

449

471

9.00E−45

pir:[LN:MMECTC]

[AC:A65091:A03430:S11457:153

455] [PN:outer membrane protein

tolC precursor] [GN:tolC]

[CL:outer membrane protein tolC]

[OR:

Escherichia coli

] [MP:66

min]

Contig092G

4892833_c1_157

1333

5459

1086

361

492

5.30E−47

sp:[LN:YJGQ_HAEIN]

[AC:P45332] [GN:H11703]

[OR:

HAEMOPHILUS

INFLUENZAE

]

fDE:HYPOTHETICAL PROTEIN

H11703] [SP:P45332]

Contig092G

4943818_c3_214

1334

5460

1707

568

1518

1.00E−155

sp:[LN:LCFA_ECOLI]

[AC:P29212] [GN:FADD:OLDD]

[OR:

ESCHERICHIA COLI

]

[EC:6.2.1.3]

[DE:SYNTHETASE)]

[SP:P29212]

Contig092G

5161387_f2_71

1335

5461

1212

403

698

1.50E−102

sp:[LN:THRC_SYNY3]

[AC:P74193]

[GN:THRC:SLL1172]

[OR:SYNECHOCYSTIS SP]

[SR:PCC 6803,] [EC:4.2.99.2]

[DE:THREONINE SYNTHASE,]

[SP:P74193]

Contig092G

5281305_c1_155

1336

5462

1101

366

815

3.20E−81

sp:[LN:RIBD_HAEIN]

[AC:P44326]

[GN:RIBD:RIBG:H10944]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:3.5.4.—]

[DE:RIBOFLAVIN-SPECIFIC

DEAMINASE,] [SP:P44326]

Contig092G

5896966_f1_9

1337

5463

942

313

587

4.60E−57

sp:[LN:YADB_ECOLI]

[AC:P27305:P75662] [GN:YADB]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 34.9 KD

PROTEIN IN PCNB-DKSA

INTERGENIC REGION]

[SP:P27305:P75662]

Contig092G

602137_c1_152

1338

5464

243

80

NO-HIT

Contig092G

6053750_f1_42

1339

5465

1404

467

1112

1.10E−112

sp:[LN:YEGB_ECOLI]

[AC:P36554:P76400] [GN:YEGB]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 50.9 KD

PROTEIN IN ALKA-BAES

INTERGENIC REGION]

[SP:P36554:P76400]

Contig092G

6062900_f1_7

1340

5466

1908

635

2263

1.10E−234

sp:[LN:THIC_ECOLI]

[AC:P30136] [GN:THIC]

[OR:

ESCHER[CHIA COLI

]

[DE:THIAMIN BIOSYNTHESIS

PROTEIN THIC] [SP:P30136]

Contig092G

6148337_f1_50

1341

5467

501

166

NO-HIT

Contig092G

6647257_f2_68

1342

5468

216

71

NO-HIT

Contig092G

7032506_c3_231

1343

5469

327

108

94

8.00E−05

pir:[LN:S75293] [AC:S75293]

[PN:hypothetical protein ssr2333]

[OR:Syncchocystis sp.] [SR:PCC

6803, PCC 6803] [SR:PCC 6803,]

Contig092G

835305_c1_150

1344

5470

429

142

NO-HIT

Contig092G

866427_f1_51

1345

5471

624

207

176

2.60E−12

pir:[LN:A69911] [AC:A69911]

[PN:hypothetical protein yoml]

[GN:yoml] [GR:

Bacillus subtilis

]

Contig092G

9882967_f2_99

1346

5472

579

192

192.

2.70E−18

pir:[LN:G69292] [AC:G69292]

[PN:tryptophan repressor binding

protein (wrbA) homolog]

[CL:conserved hypothetical

protein YCR004c]

[OR:

Archaeoglobus fulgidus

]

Contig099G

10657262_c2_197

1347

5473

543

180

559

4.20E−54

sp:[LN:GREB_ECOLI]

[AC:P30128:P78114] [GN:GREB]

[OR:

ESCHERICHIA COLI

]

[DE:GREB)] [SP:P30128:P78114]

Contig099G

10666550_c1_170

1348

5474

3120

1039

2524

2.50E−262

sp:[LN:MEXB_PSEAE]

[AC:P52002] [GN:MEXB]

[OR:

PSEUDOMONAS

AERUGINOSA

]

[DE:MULTIDRUG RESISTANCE

PROTEIN MEXB (MULTIDRUG

EFFLUX TRANSPORTER

MEXB)] [SP:P52002]

Contig099G

13884627_f2_74

1349

5475

636

211

402

1.80E−37

gp:[GI:e1329705:g3688416]

[LN:LSAJ6274] [AC:AJ006274]

[PN:acetyltransferase-like protein]

[GN:orfy] [OR:

Lactobacillus

sakei

] [DE:

Lactobacillus sakei

orfy, hrcA, grpE, dnaK, dnat

genes.]

Contig099G

14083552_f2_60

1350

5476

1845

614

1929

2.80E−199

sp:[LN:PPCK_CHLLI]

[AC:Q08262] [GN:PCKA]

[OR:

CHLOROBIUM LIMICOLA

]

[EC:4.1.1.32]

[DE:(PHOSPHOENOLPYRUVAT

E CARBOXYLASE) (PEPCK)]

[SP:Q08262]

Contig099G

14463161_c3_221

1351

5477

186

61

NO-HIT

Contig099G

14540927_c1_154

1352

5478

345

114

188

8.70E−15

sp:[LN:YBAZ_ECOLI]

[AC:P75707] [GN:YBAZ]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 14.4 KD

PROTEIN IN TESB-HHA

INTERGENIC REGION]

[SP:P75707]

Contig099G

14587753_c1_159

1353

5479

654

2111

585

7.40E−57

sp:[LN:FTSJ_ECOLI]

[AC:P28692] [GN:FTSJ:MRSF]

[OR:

ESCHERICHIA COLI

]

[DE:CELL DIVISION PROTEIN

FTSJ] [SP:P28692]

Contig099G

1460875_c3_230

1354

5480

1038

345

834

3.10E−83

gp:[GI:g3241975] [LN:SSU85710]

[AC:U85710] [PN:transposase]

[OR:

Sulfolobus solfataricus

]

[DE:

Sulfolobus solfataricus

insertion element ISC1041,

transposasegene, complete cds.]

Contig099G

1460875_f2_103

1355

5481

387

129

233

1.50E−19

gp:[GI:g3241975] [LN:55U85710]

[AC:U85710] [PN:transposase]

[OR:

Sulfolobus solfataricus

]

[DE:

Sulfolobus solfataricus

insertion element ISC1041,

transposasegene, complete cds.]

Contig099G

15646917_c2_183

1356

5482

897

298

679

8.10E−67

sp:[LN:DHPS_ECOLI]

[AC:P26282:P78110]

[GN:FOLP:DHPS]

[OR:

ESCHERICHIA COLI

]

[EC:2.5.1.15]

[DE:PYROPHOSPHORYLASE)]

[SP:P26282:P78110]

Contig099G

16828301_f1_23

1357

5483

543

180

NO-HIT

Contig099G

1955076_f2_73

1358

5484

507

168

562

2.00E−54

sp:[LN:GREA_ECOLI]

[AC:P21346:P78111] [GN:GREA]

[OR:

ESCHERICHIA COLI

]

[DE:GREA)] [SP:P21346:P78111]

Contig099G

19562510_f2_50

1359

5485

933

310

676

1.70E−66

sp:[LN:HTPX_HAEIN]

[AC:P44840] [GN:HTPX:H10720]

[OR:

HAEMOPHILUS

INFLUENZAE

] [DE:HEAT

SHOCK PROTEIN HTPX

HOMOLOG] [SP:P44840]

Contig099G

19563153_c2_190

1360

5486

9873

3290

483

2.50E−48

pir:[LN:576109] [AC:576109]

[PN:hypotheticai protein]

[OR:Synechocystis sp.] [SR:PCC

6803., PCC 6803] [SR:PCC 6803,]

Contig099G

19798577_f2_53

1361

5487

375

124

271

1.40E−23

sp:[LN:KDGL_HAEIN]

[AC:P44424]

[GN:DGKA:H10335]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:2.7.1.107]

[DE:(DGK)] [SP:P44424]

Contig099G

20391513_f3_126

1362

5488

456

151

NO-HIT

Contig099G

21564165_c1_176

1363

5489

969

322

891

2.30E−91

sp:[LN:YDAO_HAEIN]

[AC:Q57184:O05059]

[GN:H11371.1]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

H11371.1] [SP:Q57184:O05059]

Contig099G

22383555_c2_180

1364

5490

1785

594

268

3.50E−21

sp:[LN:CAPA_BACAN]

[AC:P19579] [GN:CAPA]

[OR:

BACILLUS ANTHRACIS

]

[DE:CAPA PROTEIN]

[SP:P19579]

Contig099G

2258_f1_20

1365

5491

378

125

NO-HIT

Contig099G

22698458_c3_211

1366

5492

945

314

648

1.60E−63

sp:[LN:FOLD_BACSU]

[AC:P54382] [GN:FOLD]

[OR:

BACILLUS SUBTILIS

]

[EC:1.5.1.5:3.5.4.9]

[DE:METHENYLTETRAHYDRO

FOLATE CYCLOHYDROLASE,]

[SP:P54382]

Contig099G

23475432_f2_72

1367

5493

3252

1083

4166

0

gp:[GI:g1750387]

[LN:PAU81259]

[AC:U81259:L27528]

[PN:carbamoylphosphate

synthetase large subunit]

[GN:carB] [OR:

Pseudomonas

aeruginosa

] [DE:

Pseudomonas

aeruginosa

dihydrodipicolinate

reductase (dapB) gene, partial cds,

carbamoylphosphate synthetase

small subunit(carA)

andcarbamoylphosphate synthetase

large subunit (carB) genes,

completecds, and FtsJ homolog

(itsJ) gene, partial cds.]

Contig099G

23520032_f1_24

1368

5494

750

249

NO-HIT

Contig099G

23636635_c3_210

1369

5495

1911

636

1844

2.90E−190

gp:[GI:g746401] [LN:U01376]

[AC:U01376:M93423:M93424]

[PN:ATP-binding protein]

[GN:mrsC] [OR:

Escherichia coli

]

[DE:

Escherichia coli

K12

ampicillin-binding protein

(dacB),transcription elongation

factor (greA), regulatory protein

(mrsF), ATP-binding protein

(mrsC), dihydropteroate synthase,

regulatoryprotein (mrsA), and

membrane protein genes, complete

cds.] [NT:TTG start codon]

Contig099G

23645001_c1_167

1370

5496

954

317

198

3.10E−14

sp:[LN:BMRU_BACSU]

[AC:P39074] [GN:BMRU]

[OR:

BACILLUS SUBTILIS

]

[DE:BMRU PROTEIN]

[SP:P39074]

Contig099G

23678427_f1_18

1371

5497

1389

462

1114

6.50E−113

sp:[LN:KGTP_ECOLI]

[AC:P17448] [GN:KGTP:WITA]

[OR:

ESCHERICHIA COLI

]

[DE:ALPHA-

KETOGLUTARATE

PERMEASE] [SP:P17448]

Contig099G

23704680_c3_212

1372

5498

702

233

149

4.70E−09

pir:[LN:B70480] [AC:B70480]

[PN:ribosomal protein L11

methyltransferase] [GN:prmA]

[CL:bioC homology] [OR:

Aquifex

aeolicus]

Contig099G

23725037_c1_162

1373

5499

1779

592

658

1.50E−75

sp:[LN:PPBD_BACSU]

[AC:P42251] [GN:PHOD]

[OR:

BACILLUS SUBTILIS

]

[EC:3.1.3.1] [DE:ALKALINE

PHOSPRATASE D

PRECURSOR, (APASED)

(RANI) (BC6)] [SP:P42251]

Contig099G

24252213_c3_229

1374

5500

4011

1336

918

3.50E−90

sp:[LN:DHBF_BACSU]

[AC:P45745] [GN:DHBF]

[OR:

BACILLUS SUBTILIS

]

[DE:PROBABLE SERINE

ACTIVATING ENZYME]

[SP:P45745]

Contig099G

24648386_f3_111

1375

5501

870

289

382

2.40E−35

pir:[LN:B69844] [AC:B69844]

[PN:lytic transglycosylase

homolog yjbJ] [GN:yjbJ]

[OR:

Bacillus subtilis

]

Contig099G

24812790_c3_201

1376

5502

1707

568

NO-HIT

Contig099G

24882760_c1_151

1377

5503

11679

3892

1342

3.40E−132

pir:[LN:576109] [AC:S76109]

[PN:hypothetical protein]

[OR:Synechocystis sp.] [SR:PCC

6803, , PCC 6803] [SR:PCC 6803,]

Contig099G

26054003_f3_136

1378

5504

1245

414

1413

1.40E−144

sp:[LN:CARA_ECOLI]

[AC:P00907] [GN:CARA:PYRA]

[OR:

ESCHERICHIA COLI

]

[EC:6.3.5.5] [DE:PHOSPHATE

SYNTHETASE GLUTAMINE

CHAIN)] [SP:P00907]

Contig099G

26257177_f2_102

1379

5505

384

127

107

5.80E−05

sp:[LN:AGAI_YEAST]

[AC:P32323]

[GN:AGAI:YNR044W:N3431]

[OR:

SACCHAROMYCES

CEREVISIAE

] [SR:,BAKER'S

YEAST] [DE:A-AGGLUTININ

ATTACHMENT SUBUNIT

PRECURSOR] [SP:P32323]

Contig099G

26438901_c1_169

1380

5506

981

326

157

2.50E−09

pir:[LN:G69997] [AC:G69997]

[PN:hypothetical protein ytnP]

[GN:ytnP] [OR:

Bacillus subtilis

]

Contig099G

26611327_c3_213

1381

5507

1539

512

1930

2.20E−199

sp:[LN:GLPK_PSEAE]

[AC:Q51390] [GN:GLPK]

[OR:

PSEUDOMONAS

AERUGINOSA

] [EC:2.7.1.30]

[DE:(GLYCEROKINASE) (GK)]

[SP:Q51390]

Contig099G

26642312_c3_220

1382

5508

1653

550

2137

2.60E−221

gp:[GI:g576779] [LN:PAU17072]

[AC:U17072] [PN:GroEL]

[GN:mopA] [FN:chaperone]

[OR:

Pseudomonas aeruginosa

]

[DE:

Pseudomonas aeruginosa

GroEL (mopA) gene, complete

cds.]

Contig099G

272958_c1_161

1383

5509

348

115

NO-HIT

Contig099G

3007805_c2_191

1384

5510

321

106

352

3.70E−32

sp:[LN:CH10_PSEAE]

[AC:P30720]

[GN:MOPB:GROES]

[OR:

PSEUDOMONAS

AERUGINOSA

] [DE:10 KD

CHAPERONIN (PROTEIN

CPN10) (PROTEIN GROES)]

[SP:P30720]

Contig099G

30709427_c2_189

1385

5511

774

257

170

7.10E−13

pir:[LN:F69104] [AC:F69104]

[PN:3′,5′-cyclic-nucleotide

phosphodiesterase, cpdA homolog

MTH178:Icc related protein]

[GN:MTHI78] [CL:3′,5′-cyctic-

nucleotidc phosphodiesterase

cpdA:3′,5′-cyclic-nuclcolide

phosphodicsterase cpdA

homotogy:phosphocsterase core

homology] [OR:

Methanobacterium

thermoautotrophicum

]

[EC:31.4.17]

Contig099G

3126567_c1_179

1386

5512

354

117

108

2.60E−06

pir:[LN:H70429] [AC:H70429]

[PN:conserved hypothetical

protein aq_1494] [GN:aq_1494]

[OR:

Aquifex acolicus

]

Contig099G

32425087_f1_7

1387

5513

1047

348

296

7.50E−33

sp:[LN:YFHD_HAEIN]

[AC:P44587] [GN:H10232]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

H10232] [SP:P44587]

Contig099G

34407787_f3_114

1388

5514

1161

386

361

4.10E−33

sp:[LN:GLPQ_ECOLI]

[AC:P09394] [GN:GLPQ]

[OR:

ESCHERICHIA COLI

]

[EC:3.1.4.46] [DE:(EC 3.1.4.46)

(GLYCEROPHOSPHODIESTER

PHOSPHODIESTERASE)]

[SP:P09394]

Contig099G

36194057_c3_209

1389

5515

627

208

148

1.40E−08

gp:[GI:e1259776:g3714410]

[LN:A58934] [AC:A58934]

[OR:unidentified] [DE:Sequence 3

from Patent WO9641877.]

[NT:unnamed protein product]

[RE:

Contig099G

393751_c1_171

1390

5516

600

199

NO-HIT

Contig099G

4332177_f3_138

1391

5517

468

155

248

3.80E−21

sp:[LN:Y531_METJA]

[AC:Q57951] [GN:MJ0531]

[OR:

METHANOCOCCUS

JANNASCHII

]

[DE:HYPOTHETICAL PROTEIN

MJ0531] [SP:Q57951]

Contig099G

4336568_c3_226

1392

5518

393

130

NO-HIT

Contig099G

5370843_c2_185

1393

5519

237

78

NO-HIT

Contig099G

57937_c2_199

1394

5520

909

302

NO-HIT

Contig099G

5946877_c3_231

1395

5521

375

124

168

1.10E−12

gp:[GI:g2661174]

[LN:RSU76671] [AC:U76671]

[PN:photosynthetic regulatory

protein] [GN:spb]

[OR:

Rhodobacter sphaeroides

]

[DE:

Rhodobacter sphaeroides

photosynthetic regulatory; protein

(spb)gene and S-adenosyl L-

homocystein hydrolase gene,

complete cds.] [NT:trans-acting

factor]

Contig099G

6671882_f1_4

1396

5522

810

269

120

3.40E−05

gp:[GI:g3883061] [LN:AF074611]

[AC:AF074611] [PN:unknown]

[GN:Y1061] [OR:

Yersinia pestis

]

[DE:

Yersinia pestis

plasmid pMT-

1, complete plasmid sequence.]

[NT:o240; 24 pct identical (0 gaps)

to 81 residues of]

Contig099G

6837813_c1_166

1397

5523

1521

506

1630

1.40E−167

gp:[GI:d1032510:g3299806]

[LN:ABOI 5976] [AC:ABOI 5976]

[PN:sn-glycerol-3-phosphate

dehydrogenase] [GN:gtpD]

[OR:

Pseudomonas tosii

]

[SR:

Pseudomonas tosii

(strain:PT814) DNA,

clone_lib:pHHM105]

[DE:

Pseudomonas tosii

glpD gene

for sn-glycerol-3-

phosphatedehydrogenase,

complete cds]

Contig099G

7272253_f3_109

1398

5524

558

185

NO-HIT

Contig099G

79083_f1_135

1399

5525

273

90

NO-HIT

Contig099G

838887_f2_69

1400

5526

339

112

233

1.50E−19

sp:[LN:YHBY_PSEAE]

[AC:P95453]

[OR:

PSEUDOMONAS

AERUGINOSA

]

[DE:HYPOTHETICAL 11.7 KD

PROTEIN IN FTSJ-GREA

INTERGENIC REGION]

[SP:P95453]

Contig101G

10036552_f2_15

1401

5527

2589

862

NO-HIT

Contig101G

1068827_c3_77

1402

5528

1359

452

1969

1.60E−203

sp:[LN:ASSY_HAEIN]

[AC:P44315] [GN:ARGG:H11727]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:6.3.4.5]

[DE:LIGASE)] [SP:P44315]

Contig101G

1204377_f1_29

1403

5529

321

106

NO-HIT

Contig101G

12944418_f3_33

1404

5530

246

81

NO-HIT

Contig101G

1360400_c1_48

1405

5531

252

83

NO-HIT

Contig101G

1460875_c1_50

1406

5532

420

139

233

1.50E−19

gp:[GI:g3241975] [LN:SSU85710]

[AC:U85710] [PN:transposase]

[OR:

Sulfolobus solfataricus

]

[DE:

Sulfolobus solfataricus

insertion element ISC1041,

transposasegene, complete cds.]

Contig101G

14634678_f1_36

1407

5533

495

164

NO-HIT

Contig101G

16132050_c3_84

1408

5534

189

62

NO-HIT

Contig101G

21679680_c3_79

1409

5535

702

233

575

8.50E−56

sp:[LN:RNT_VIBPA]

[AC:P46232] [GN:RNT]

[OR:

VIBRIO

PARAHAEMOLYTICUS

]

[EC:3.1.13.—]

[DE:RIBONUCLEASE T,

(EXORIBONUCLEASE T)

(RNASE T)] [SP:P46232]

Contig101G

23447203_f3_35

1410

5536

3198

1065

300

1.80E−32

gp:[GI:g2920625] [LN:AF044499]

[AC:AF044499] [PN:vgrE protein]

[OR:

Escherichia coli

]

[DE:

Escherichia coli

strain ec50

RhsE accessory genetic element

vgrEprotein, core protein, and

dsORF-e5 genes, complete cds.]

Contig101G

23454827_c1_46

1411

5537

2115

704

950

4.10E−98

pir:[LN:S74457] [AC:S74457]

[PN:ferrichrome-iron receptor

3:protein slr1490:protein slr1490]

[GN:fhuA_3] [CL:ferrichrome-

iron receptor 1:tonB-dependent

receptor amino-terminal

homology:tonB-dependent

receptor carboxyl-terminal

homology] [OR:Synechocystis sp.]

[SR:PCC 6803, , PCC 6803]

[SR:PCC 6803,]

Contig101G

23601063_f2_24

1412

5538

207

68

NO-HIT

Contig101G

24257630_f2_20

1413

5539

810

269

682

3.90E−67

pir:[LN:G70875] [AC:G70875]

[PN:probable 2] [GN:fadH]

[CL:NADH oxidase]

[OR:

Mycobacterium tuberculosis

]

Contig101G

24495926_f3_28

1414

5540

1065

354

141

2.00E−06

gp:[GI:g1843460]

[LN:ECORHSEX] [AC:L19083]

[OR:

Escherichia coli

]

[DE:

Escherichia coli

RhsE genetic

element; defective RhsE core

protein,complete cds; complete

ORF-E2; H-rpt subelement;

complete ORF-H] [NT:RhsE core

peptide with unique 158 amino

acid]

Contig101G

24613507_c1_44

1415

5541

1041

346

1114

6.50E−113

gp:[GI:g3868712]

[LN:PAU73505] [AC:U73505]

[PN:dihydroorotase] [GN:pyrC]

[OR:

Pseudomonas aeruginosa

]

[DE:

Pseudomonas aeruginosa

dihydroorotase (pyrC) gene,

complete cds.] [NT:encodes the

‘active’ dihydroorotase enzyme]

Contig101G

289002_f1_11

1416

5542

4791

1596

472

1.40E−63

sp:[LN:RHSD_ECOLI]

[AC:P16919:P77232] [GN:RHSD]

[OR:

ESCHERICHIA COLI

]

[DE:RHSD PROTEIN

PRECURSOR]

[SP:P16919:P77232]

Contig101G

30117790_f3_32

1417

5543

1287

428

391

2.70E−36

pir:[LN:S74991] [AC:S74991]

[PN:pleD-2 protein:protein

slr1047:protein slr1047] [GN:pleD

2] [OR:Syncchocystis sp.]

[SR:PCC 6803, , PCC 6803]

[SR:PCC 6803,]

Contig101G

33369017_f3_26

1418

5544

333

110

NO-HIT

Contig101G

33757765_f1_1

1419

5545

2415

804

228

2.20E−16

sp:[LN:WAPA_BACSU]

[AC:Q07833] [GN:WAPA:NI7G]

[OR:

BACILLUS SUBTILIS

]

[DE:WALL-ASSOCIATED

PROTEIN PRECURSOR]

[SP:Q07833]

Contig101G

34023343_f2_25

1420

5546

453

150

NO-HIT

Contig101G

34158137_f1_5

1421

5547

1437

478

1308

1.80E−133

pir:[LN:G70875] [AC:G70875]

[PN:probable 2] [GN:fadH]

[CL:NADH oxidase]

[OR:

Mycobacterium tuberculosis

]

Contig101G

35985180_f1_8

1422

5548

720

239

122

7.90E−06

gp:[GI:e1287197:g3063879]

[LN:MLCB1883] [AC:AL022486]

[LN:putative transcriptional

regulator] [GN:MLCB1883.15]

[OR:

Mycobacterium leprae

[DE:

Mycobacterium leprae

cosmid

B1883.] [NT:MLCBI883.15,

probable transcriptional regulator,]

Contig101G

3912763_f1_6

1423

5549

885

294

378

6.40E−35

sp:[LN:PLPB_PASHA]

[AC:Q08869:Q07364] [GN:PLPB]

[OR:

PASTEURELLA

HAEMOLYTICA

] [DE:OUTER

MEMBRANE LIPOPROTEIN 2

PRECURSOR (PLP2)]

[SP:Q08869:Q07364]

Contig101G

3937818_c1_49

1424

5550

333

110

NO-HIT

Contig101G

3961688_f1_13

1425

5551

222

73

NO-HIT

Contig101G

4410010_c2_51

1426

5552

192

63

NO-HIT

Contig101G

4767181_c3_83

1427

5553

351

116

NO-HIT

Contig101G

4876700_f3_38

1428

5554

219

72

NO-HIT

Contig101G

4885927_f1_12

1429

5555

267

88

NO-HIT

Contig101G

5109627_f3_37

1430

5556

264

87

NO-HIT

Contig101G

626042_c1_39

1431

5557

309

102

376

1.00E−34

gp:[GI:g3241975] [LN:SSU85710]

[AC:U85710] [PN:transposasc]

[OR:

Sulfolobus solfataricus

]

[DE:

Sulfolobus solfataricus

insertion element ISC1041,

transposasegene, complete cds.]

Contig101G

630305_c1_41

1432

5558

228

75

NO-HIT

Contig123G

10550901_c2_68

1433

5559

816

271

451

1.20E−42

sp:[LN:YMDC_ECOLI]

[AC:P75919] [GN:YMDC]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 55.9 KD

PROTEIN IN CSGC-MDOG

INTERGENIC REGION]

[SP:P75919]

Contig123G

10970390_c1_54

1434

5560

435

144

342

4.20E−31

sp:[LN:SSPB_ECOLI]

[AC:P25663] [GN:SSPB]

[OR:

ESCHERICHIA COLI

]

[DE:STRINGENT STARVATION

PROTEIN B] [SP:P25663]

Contig123G

13675305_f3_34

1435

5561

1200

399

946

4.10E−95

gp:[GI:g1943792]

[LN:CELC37A2] [AC:U97194]

[GN:C37A2.3]

[OR:

Caenorhabditis elegans

]

[SR:

Caenorhabditis elegans

strain=Bristol N2]

[DE:

Caenorhabditis elegans

cosmid C37A2.] [NT:Similar to

acyl-CoA dehydrogenase; coded

for by C.]

Contig123G

13869000_c3_90

1436

5562

324

107

117

2.90E−07

sp:[LN:YFIB_ECOLI]

[AC:P07021] [GN:YFIB]

[OR:

ESCHERICHIA COLI

]

[DE:PUTATIVE 15.3 KD

LIPOPROTEIN IN AROF-RPLS

INTERGENIC REGION

PRECURSOR] [SP:P07021]

Contig123G

14234706_c1_53

1437

5563

681

226

359

6.60E−33

sp:[LN:SSPA_HAEIN]

[AC:P45207] [GN:SSPA:H11441]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:STRINGENT STARVATION

PROTEIN A HOMOLOG]

[SP:P45207]

Contig123G

14579775_f2_27

1438

5564

315

104

98

3.00E−05

gp:[GI:g208931]

[LN:SYNORFLAC] [AC:M15619]

[OR:artificial sequence] [SR:

E.coli

(strain SE5000) synthetic DNA,

clone pKB1] [DE:Synthetic

E.coli

ORF16/lacZ fusion protein, partial

cds.] [NT:ORF16-lacZ fusion

protein] [RE:

Contig123G

14657952_f1_4

1439

5565

927

308

444

6.50E−42

sp:[LN:YKUF_BACSU]

[AC:O34717] [GN:YKUF]

[OR:

BACILLUS SUBTILIS

]

[EC.1.—.—.—] [DE:(EC 1.—.—.—)]

[SP:O34717]

Contig123G

14875012_f1_13

1440

5566

816

271

268

2.90E−23

gp:[GI:g3135672] [LN:AF064070]

[AC:AF064070] [PN:putative 1-

acyl-sn-glycerol-3-phosphate]

[GN:plsC] [OR:

Burkholderia

pseudomallei

] [DE:

Burkholderia

pseudomallei

putative

dihydroorotase (pyrC) gene,partial

cds; putative 1-acyl-sn-glycerol-3-

phosphateacyltransferase (plsC),

putative diadenosine

tetraphosphatase(apaH), complete

cds; type II O-antigen biosynthesis

gene cluster,complete sequence;

putative undecaprenyl phosphateN-

acetylglucosaminyltransferase, and

putative UDP-glucose4-epimerase

genes, complete cds; and putative

galactosyltransferase gene, partial

cds.] [NT:PlsC]

Contig123G

1712_c1_5I

1441

5567

459

152

265

600E−23

gp:[GI:g1209222] [LN:ACCEST]

[AC:L38252] [OR:

Acinetobacter

lwoffii

] [DE:

Acinetobacter lwoffii

orf1 and esterase (est) genes,

complete cds] [NT:orf1]

Contig123G

192203_c2_60

1442

5568

192

63

NO-HIT

Contig123G

20316433_c1_50

1443

5569

738

245

272

1.10E−23

sp:[LN:YWBG_BACSU]

[AC:P39590] [GN:YWBG:IPA-

22R] [OR:

BACILLUS SUBTILIS

]

[DE:HYPOTHETICAL 25.8 KD

PROTEIN IN EPR-GALK

INTERGENIC REGION]

[SP:P39590]

Contig123G

20485917_f3_40

1444

5570

981

326

700

4.80E−69

sp:[LN:KSGA_ECOLI]

[AC:P06992] [GN:KSGA:RSMA]

[OR:

ESCHERICHIA COLI

]

[EC:2.1.1.—]

[DE:DIMETHYLTRANSFERASE

)] [SP:P06992]

Contig123G

2070327_c2_70

1445

5571

429

142

555

1.10E−53

sp:[LN:RL13_ECOLI]

[AC:P02410] [GN:RPLM]

[OR:

ESCHERICHIA COLI

]

[DE:50S RIBOSOMAL PROTEIN

L13] [SP:P02410]

Contig123G

22479677_c2_83

1446

5572

621

206

184

2.30E−14

pir:[LN:C70604] [AC:C70604]

[PN:probable transcription

repressor Rv3557c] [GN:Rv3557c]

[OR:

Mycobacterium tuberculosis

]

Contig123G

22834718_c2_71

1447

5573

399

132

504

2.90E−48

pir:[LN:R3EC9]

[AC:H651 14:177537:A02719]

[PN:ribosomal protein S9:30S

ribosomal subunit protein S9]

[GN:rpsl] [CL:

Escherichia coli

ribosomal protein S9]

[OR:

Escherichia coli

] [MP:70

min]

Contig123G

24037500_f3_32

1448

5574

291

96

121

1.30E−06

pir:[LN:F70719] [AC:F70719]

[PN:hypothetical protein Rv0976c]

[GN:Rv0976c]

[OR:

Mycobacterium tuberculosis

]

Contig123G

24275326_f2_17

1449

5575

1227

408

710

4.20E−70

pir:[LN:E70719] [AC:E70719]

[PN:probable fadE13 protein]

[GN:fadE13] [OR:

Mycobacterium

tuberculosis

]

Contig123G

24298387_f1_9

1450

5576

1005

334

909

3.50E−91

sp:[LN:PDXA_ECOLI]

[AC:P19624] [GN:PDXA]

[OR:

ESCHERICHIA COLI

]

[DE:PYRIDOXAL PHOSPHATE

BIOSYNTHETIC PROTEIN

PDXA] [SP:P19624]

Contig123G

24484687_f3_29

1451

5577

375

124

88

0.00035

gp:[GI:g1458283]

[LN:CELF25B4] [AC:V64842]

[GN:F25B4.8] [OR:

Caenorhabditis

elegans

] [SR:

Caenorhabditis

elegans

strain=Bristol N2]

[DE:

Caenorhabditis elegans

cosmid F25B4.]

Contig123G

29381590_f1_7

1452

5578

876

291

324

3.40E−29

pir:[LN:C69304] [AC:C69304]

[PN:enoyl-CoA hydratase (fad-1)

homolog] [CL:naphthoate

synthase:enoyl-CoA hydratase

homology] [OR:

Archaeoglobus

fulgidus

]

Contig123G

30504026_c2_66

1453

5579

510

169

228

5.00E−19

sp:[LN:YFIR_ECOLI]

[AC:P76597] [GN:YFIR]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 19.0 KD

PROTEIN IN AROF-RPLS

INTERGENIC REGION

PRECURSOR] [SP:P76597]

Contig123G

31687550_f2_19

1454

5580

1677

558

623

7.00E−61

pir:[LN:F70719] [AC:F70719]

[PN:hypothetical protein Rv0976c]

[GN:Rv0976c]

[OR:

Mycobacterium tubercutosis

]

Contig123G

32610327_f1_41

1455

5581

840

279

570

2.90E−55

sp:[LN:APAH_SALTY]

[AC:Q5601 8] [GN:APAH]

[OR:

SALMONELLA

TYPHIMURIUM

] [EC:3.6.1.41]

[DE:(DIADENOSINE

TETRAPHOSPHATASE)]

[SP:Q56018]

Contig123G

34415662_c3_93

1456

5582

405

134

NO-HIT

Contig123G

34464013_f1_14

1457

5583

1029

342

252

1.40E−21

pir:[LN:B69865] [AC:1369865]

[PN:probable phosphoesterase,

ykuE] [GN:ykuE] [CL:probable

phosphoesterase

yael:phosphoesterase core

homology] [OR:

Bacillus subtilis

]

[EC:3.1.—.—]

Contig123G

35574025_f3_33

1458

5584

1641

546

1173

3.70E−119

pir:[LN:D70719] [AC:D70719]

[PN:probable propionyl-COA

carboxylase] [GN:accD2]

[OR:

Mycobacterium tuberculosis

]

Contig123G

500017_c3_92

1459

5585

1365

454

1130

1.30E−114

sp:[LN:HFLX_ECOLI]

[AC:P255 19] [GN:HFLX]

[OR:

ESCHERICHIA COLI

]

[DE:GTP-BINDING PROTEIN

HFLX] [SP:P25519]

Contig123G

5078377_f1_1

1460

5586

609

202

NO-HIT

Contig123G

5350338_f1_8

1461

5587

1959

652

741

1.30E−131

gp:[GI:g533707] [LN:ATU12536]

[AC:U12536] [PN:3-

methylcrotonyl-COA carboxylase

precursor] [FN:carboxylation of 3-

methylcrotonyl-COA]

[OR:

Arabidopsis thaliana

]

[SR:thale cress] [EC:6.4.1.4]

[DE:

Arabidopsis thaliana

3-

methylcrotonyl-CoA carboxylase

precursormRNA, complete cds.]

Contig123G

6742001_c3_87

1462

5588

354

117

NO-HIT

Contig123G

6927063_c1_48

1463

5589

1242

413

434

7.50E−41

sp:[LN:YFIN_ECOLI]

[AC:P46139:P76598] [GN:YFIN]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 46.0 KD

PROTEIN IN AROF-RPLS

INTERGENIC REGION]

[SP:P46139:P76598]

Contig123G

915892_c3_97

1464

5590

660

219

NO-HIT

Contig123G

960812_c1_49

1465

5591

828

275

440

1.70E−41

sp:[LN:YMDC_ECOLI]

[AC:P75919] [GN:YMDC]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 55.9 KD

PROTEIN IN CSGC-MDOG

INTERGENIC REGION]

[SP:P75919]

Contig124G

10048176_f2_37

1466

5592

732

243

190

4.10E−21

sp:[LN:GPH_ECOLI]

[AC:P32662] [GN:GPH]

[OR:

ESCHERICHIA COLI

]

[EC:3.1.3.18]

[DE:PHOSPHOGLYCOLATE

PHOSPHATASE, (PGP)]

[SP:P32662]

ContigI24G

12923438_f1_23

1467

5593

537

178

397

6.20E−37

sp:[LN:LSPA_PSEFL]

[AC:P17942] [GN:LSPA]

[OR:

PSEUDOMONAS

FLUORESCENS

] [EC:3.4.23.36]

[DE:PEPTIDASE) (SIGNAL

PEPTIDASE II) (SPASE II)]

[SP:P17942]

Contig124G

14065952_f2_38

1468

5594

489

162

NO-HIT

Contig124G

1460875_c2_129

1469

5595

435

145

242

1.70E−20

gp:[GI:g3241975] [LN:SSU85710]

[AC:U85710] [PN:transposase]

[OR:

Sulfolobus solfataricus

]

[DE:

Sulfolobus solfataricus

insention element ISC1041,

transposasegene, complete cds.]

Contig124G

16495635_f1_77

1470

5596

228

75

NO-HIT

Contig124G

16992212_f1_12

1471

5597

735

244

127

3.20E−07

pir:[LN:B70391] [AC:B70391]

[PN:transcription regulator

TetR/AcrR family] [GN:acrR1]

[OR:

Aquifex aeolicus

]

Contig124G

19610002_f2_39

1472

5598

438

145

NO-HIT

Contig124G

210791_f1_3

1473

5599

2202

733

2872

3.30E−299

gp:[GI:e1240524:g2808460]

[LN:AJPTPPTK] [AC:Y15162]

[GN :ptk] [OR:

Acinetobacter

johnsonii] [DE:

Acinctobacter

johnsonii

ptp, ptk genes.]

Contig124G

22273562_c1_99

1474

5600

1173

390

831

6.40E−83

pir:[LN:G70590] [AC:G70590]

[PN:probable desA3 protein]

[GN:desA3] [OR:

Mycobacterium

tuberculosis

]

Contig124G

22517018_f1_6

1475

5601

870

289

755

7.20E−75

sp:[LN:NADC_SALTY]

[AC:P30012] [GN:NADC]

[OR:

SALMONELLA

TYPHIMURIUM

] [EC:2.4.2.19]

[DE:(QUINOLINATE

PHOSPHORIBOSYLTRANSFER

ASE [DECARBOXYLATING])

(QAPRTASE)] [SP:P30012]

Contig124G

22831410_f1_26

1476

5602

222

73

NO-HIT

Contig124G

22837750_f1_19

1477

5603

624

207

459

1.70E−43

sp:[LN:YCDC_ECOLI]

[AC:P75899] [GN:YCDC]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL

TRANSCRIPTIONAL

REGULATOR IN WRBA-PUTA

INTERGENIC REGION]

[SP:P75899]

Contig124G

23438806_f2_47

1478

5604

1017

338

512

3.30E−59

sp:[LN:RIBF_ECOLI]

[AC:P08391:P75621] [GN:RIBF]

[OR:

ESCHERICHIA COLI

]

[EC:2.7.1.26:2.7.7.2]

[DE:SYNTHETASE)]

[SP:P08391:P75621]

Contig124G

23453183_c1_105

1479

5605

1224

407

433

9.50E−41

sp:[LN:CAPF_STAAU]

[AC:P39855] [GN:CAPF]

[OR:

STAPHYLOCOCCUS

AUREUS

] [DE:CAPF PROTEIN]

[SP:P39855]

Contig124G

23476692_c3_150

1480

5606

1077

358

551

3.00E−53

pir:[LN:S51264]

[AC:S51264:S70740]

[PN:probable galactosyltransferase

trsE] [GN:trsE] [OR:

Yersinia

enterocolitica

]

Contig124G

23538252_f1_57

1481

5607

384

127

NO-HIT

Contig124G

240I7137_f1_5

1482

5608

750

249

469

1.50E−44

gp:[GI:g2231680]

[LN:LAU91606] [AC:U91606]

[PN:macrophage infectivity

potentiator] [GN:mip]

[OR:

Legionella adelaidensis

]

[DE:

Legionella adelaidensis

macrophage infectivity potentiator

(mip)gene, complete cds.]

[NT:MIP; peptidyl-prolyl cis/trans

isomerase; PPIase;]

Contig124G

24336056_c1_98

1483

5609

1047

348

359

6.60E−33

pir:[LN:1170590] [AC:H70590]

[PN:hypothetical protein Rv3230c]

[GN:Rv3230c]

[OR:

Mycobacterium tuberculosis

]

Contig124G

24337762_f2_44

1484

5610

804

267

633

6.10E−62

gp:[GI:g3420608] [LN:AF075709]

[AC:AF075709] [PN:ABC

transporter ATP-binding subunit]

[GN:ssuB] [OR:

Pseudomonas

putida

] [DE:

Pseudomonas putida

LsfA (lsfA), complete cds; and ssu

locus,complete sequence.]

[NT:SsuB]

Contig124G

24848425_f3_75

1485

5611

2859

952

2787

3.40E−290

sp:[LN:SYI_ECOLI]

[AC:P00956:P78038:Q59429]

[GN:ILES:ILVS]

[OR:

ESCHERICHIA COLI

]

[EC:6.1.1.5] [DE:(ILERS)]

[SP:P00956:P78038:Q59429]

Contig124G

26285952_c3_135

1486

5612

567

188

107

4.20E−06

gp:[GI:g2738160]

[LN:BFU91841] [AC:U91841]

[PN:purine nucleoside

phoshorylase] [OR:

Bacillus

firmus

] [DE:

Bacillus firmus

MotA

homolog gene, partial cds, MotB

homolog gene,complete cds, and

purine nucleoside phoshorylase

gene, partial cds.] [NT:orf3] [RE:

Contig124G

26562550_f3_62

1487

5613

741

246

404

1.10E−37

gp:[GI:g2160523]

[LN:AHU56832] [AC:U56832]

[PN:FK506 binding protein]

[GN:tkpA] [FN:converts prolyl-

imidic bonds from cis to trans]

[OR:

Aeromonas hydrophila

]

[EC:5.2.1.8] [DE:

Aeromonas

hydrophila

FK506 binding protein

(fkpA) gene, completecds in 3.9 kb

fragment.] [NT:ORF3;

immunophilin; peptidyl prolyl

isomerase;]

Contig124G

26754718_f1_16

1488

5614

1002

333

732

200E−72

sp:[LN:SSUA_ECOLI]

[AC:P75853] [GN:SSUA]

[OR:

ESCHERICHIA COLI

]

[DE:PUTATIVE ALIPHATIC

SULFONATES BINDING

PROTEIN PRECURSOR]

[SP:P75853]

Contig124G

26798527_f1_2

1489

5615

450

149

635

3.70E−62

gp:[GI:e1240523:g2808459]

[LN:AJPTPPTK] [AC:Y15162]

[GN:ptp] [OR:

Acinetobacter

johnsonii

] [DE:

Acinetobacter

johnsonii

ptp, ptk genes.]

Contig124G

2830010_c1_104

1490

5616

189

62

NO-HIT

Contig124G

29303928_f2_49

1491

5617

552

183

334

2.90E−30

sp:[LN:FKBX_PSEFL]

[AC:P21863] [GN:YAAD]

[OR:

PSEUDOMONAS

FLUORESCENS

] [EC:5.2.18]

[DE:(EC 5.2.1.8) (PPIASE)

(ROTAMASE)] [SP:P21863]

Contig124G

29457790_f2_43

1492

5618

414

137

439

2.20E−41

gp:[GI:g2582422] [LN:AF026067]

[AC AF026067] [PN:putative

FMN H2-dependent

monooxygenase] [GN:slfB]

[OR:

Pseudomonas aeruginosa

]

[DE:

Pseudomonas aeruginosa

putative reductase (slfA),

putativeFMNH2-dependent

monooxygenase (slfB), and

putative FMNH2-

dependentmonooxygenase (slfC)

genes, complete cds.]

Contig124G

29562692_c3_138

1493

5619

246

81

NO-HIT

Contig124G

31270208_f2_51

1494

5620

192

63

NO-HIT

Contig124G

31283_f2_33

1495

5621

192

63

NO-HIT

Contig124G

33214031_f3_70

1496

5622

735

244

805

3.60E−80

sp:[LN:UBIG_ECOLI]

[AC:P17993:P76924]

[GN:UBIG:PUFX]

[OR:

ESCHERICHIA COLI

]

[EC:2.1.1.64]

[DE:METHYLTRANSFERASE)]

[SP:P17993:P76924]

Contig124G

33229701_f3_79

1497

5623

201

66

NO-HIT

Contig124G

3397193_c3_149

1498

5624

1293

430

1593

1.10E−163

sp:[LN:VIPA_SALTI]

[AC:Q04972] [GN:VIPA:TVIB]

[OR:

SALMONELLA TYPHI

]

[EC:1.1.1.—] [DE:VI

POLYSACCHARIDE

BIQSYNTHESIS PROTEIN

VIPA/TVIB,] [SP:Q04972]

Contig124G

34384385_c2_128

1499

5625

1041

346

1281

1.30E−130

gp:[GI:g1143204] [LN:SSU34305]

[AC:U34305] [OR:

Shigella

sonnei

] [SR:

Shigella sonnei

strain=53G] [DE:

Shigella sonnei

form I operon ORF protein genes,

complete cds,insertion sequence

IS630 protein gene, complete cds.]

[NT:ORF2; Method: conceptual

translation supplied by]

Contig124G

35589150_f2_40

1500

5626

1368

455

1121

1.20E−113

sp:[LN:ARGA_ECOLI]

[AC:P08205:O68009:O68010:O68

011:O68012:O68013]

[GN:ARGA] [GR:

ESCHERICHIA

COLI

] [EC:2.3.1.1]

[DE:SYNTHASE) (AGS)]

[SP:P08205:O68009:O68010:O68

011:O68012:O68013]

Contig124G

35815802_f2_35

1501

5627

258

85

NO-HIT

Contig124G

35939088_c3_144

1502

5628

735

244

791

1.10E−78

sp:[LN:RNPH_HAEIN]

[ACP44444] [GN:RPH:H10273]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:2.7.7.56]

[DE:NUCLEOTIDYLTRANSFER

ASE)] [SP:P44444]

Contig124G

36111400_f1_17

1503

5629

816

271

872

2.90E−87

sp:[LN:SSUC_ECOLI]

[AC:P75851] [GN:SSUC]

[OR:

ESCHERICHIA COLI

]

[DE:PUTATIVE ALIPRATIC

SULFONATES TRANSPORT

PERMEASE PROTEIN SSUC]

[SP:P75851]

Contig124G

36129552_f3_61

1504

5630

1119

372

494

3.30E−47

sp:[LN:EPSA_BURSO]

[AC:Q45407] [GN:EPSA]

[OR:

BURKHOLDERIA

SOLANACEARUM

]

[SR:,

PSEUDOMONAS

SOLANACEARUM

] [DE:EPS 1

POLYSACCHARIDE EXPORT

OUTER MEMBRANE PROTEIN

EPSA PRECURSOR]

[SP:Q45407]

Contig124G

36203311_c1_96

1505

5631

642

213

436

4.60E−41

sp:[LN:DSBA_PSEAE]

[AC:P95460] [GN:DSBA]

[OR:

PSEUDOMONAS

AERUGINOSA

]

[DE:THIOL:DISULFIDE

INTERCHANGE PROTEIN

DSBA PRECURSOR]

[SP:P95460]

Contig124G

36226687_f1_15

1506

5632

765

254

619

1.90E−60

sp:[LN:YCIK_ECOLI]

[AC:P31808:P77516] [GN:YCIK]

[OR:

ESCHERICHIA COLI

]

[SP:P31808:P77516]

Contig124G

4062561_f3_55

1507

5633

216

71

NO-HIT

Contig124G

4085938_f3_76

1508

5634

552

183

245

8.00E−21

gp:[GI:g2613073] [LN:AF030288]

[AC:AF030288]

[OR:

Brevibacterium linens

]

[DE:

Brevibacterium linens

strain

OC2 putative efflux protein

(tmpA)gene, complete cds.]

[NT:hypothetical protein; ORFI]

Contig124G

4103317_f2_41

1509

5635

1065

354

853

3.00E−85

gp[GI:g3420605] [LN:AF075709]

[AC AF075709] [PN:putative

sulfonate binding protein

precursor] [GN:ssuA]

[OR:

Pseudomonas putida

]

[DE:

Pseudomonas putida

LsfA

(lsfA), complete cds; and ssu

locus,complete sequence.]

[NT:SsuA]

Contig124G

4478428_f3_71

1510

5636

903

300

920

2.40E−92

pir:[LN:F64833]

[AC:F64833:S78622] [PN:sulfate

starvation-induced protein SSI6]

[GN:ycbN] [OR:

Escherichia coli

]

Contig124G

4687503_f3_68

1511

5637

648

215

300

1.20E−26

sp:[LN:YIJC_ECOLI]

[AC:P27307] [GN:YIJC]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 26.6 KD

PROTEIN IN UDHA-TRMA

INTERGENIC REGION (ORFA)]

[SP:P27307]

Contig124G

4804632_c1_101

1512

5638

606

201

514

2.50E−49

sp:[LN:AMPD_HAEIN]

[AC:P44624]

[GN:AMPD:H10300]

[OR:

HAEMOPHILUS

INFLUENZAE

] [DE:AMPD

PROTEIN HOMQLOG]

[SP:P44624]

Contig124G

5189703_c1_102

1513

5639

1551

516

1052

2.40E−106

sp:[LN:MVIN_SALTY]

[AC:P37169] [GN:MVIN]

[OR:

SALMONELLA

TYPHIMURIUM

]

[DE:VIRULENCE FACTOR

MVIN] [SP:P37169]

Contig124G

5265817_c1_88

1514

5640

1143

380

381

3.10E−35

gp:[GI:e1319713:g3581872]

[LN:5C135] [AC:AL031541]

[PN:putative integral membrane

protein] [GN:SC13S.39]

[OR:

Streptomyccs coelicolor

]

[DE:

Streptomyces coelicolor

cosmid 135.] [NT:SC135.39,

probable integral membrane

protein, len:]

Contig124G

5265952_c3_151

1515

5641

1158

385

165

2.00E−09

gp:[GI:g2072446]

[LN:LLU93364] [AC:U93364]

[PN:Epsl] [GN:epsl]

[OR:

Lactococcus lactis cremoris

]

[DE:

Lactococcus lactis cremoris

plasmid pNZ4000 insertion

sequenceIS982 putative

transposase gene and eps gene

cluster(epsRXABCDEFGHIJKL),

complete cds.] [NT:similar to O-

antigen polymerase of]

Contig124G

5347063_c1_100

1516

5642

2187

728

1007

8.40E−186

sp:[LN:PHLN_PSEAE]

[AC:P15713] [GN:PLCN]

[OR:

PSEUDOMONAS

AERUGINOSA

] [EC:3.1.4.3]

[DE:(PHOSPHATIDYLCHOLINE

CHOLINEPHOSPHOHYDROLA

SE)] [SP:P15713]

Contig124G

9806913_f2_54

1517

5643

282

94

NO-HIT

Contig124G

9937817_c2_106

1518

5644

420

139

125

4.10E−08

gp:[GI:g2627294]

[LN:AC003110] [AC:AC003110]

[PN:F14150_1] [OR:

Homo

sapiens

] [DE:Human DNA from

chromosome 19-specific cosmid

F14150, genomicsequence,

complete sequence.]

[NT: Hypothetical partial protein;

Hypotthetical partial]

Contig133G

10976587_c3_29

1519

5645

549

182

199

9.30E−27

sp:[LN:GPH_ECOLI]

[AC:P32662] [GN:GPH]

[OR:

ESCHERICHIA COLI

]

[EC:3.1.3.18]

[DE:PHOSPHOGLYCOLATE

PHOSPHATASE, (PGP)]

[SP:P32662]

Contig133G

114001_f1_2

1520

5646

195

64

NO-HIT

Contig133G

1193925_f3_18

1521

5647

288

95

NO-HIT

Contig133G

24417202_c2_26

1522

5648

744

247

108

0.00083

sp:[LN:GSPN_AERHY]

[AC:P41852] [GN:EXEN]

[OR:

AEROMONAS

HYDROPHILA

] [DE:GENERAL

SECRETION PATHWAY

PROTEIN N] [SP:P41852]

Contig133G

2457010_c3_27

1523

5649

315

104

161

6.30E−12

gp:[GI:g2661174]

[LN:R5U76671] [AC:U76671]

[PN:photosynthetic regulatory

protein] [GN:spb]

[OR:

Rhodobacter sphaeroides

]

[DE:

Rhodobacter sphaeroides

photosynthetic regulatory protein

(spb)gene and S-adenosyl L-

homocystein hydrolase gene,

complete cds.] [NT:trans-acting

factor]

Contig133G

32506563_c3_28

1524

5650

2286

761

702

2.40E−123

gp:[GI:g3978475] [LN:AF092918]

[AC:AF092918] [PN:outer

membrane secretion protein Q]

[GN:xcpQ] [OR:

Pseudomonas

alcaligenes

] [DE:

Pseudomonas

alcaligenes

outer membrane Xcp-

secretion system genecluster.]

[NT:XcpQ]

Contig133G

4305317_c1_25

1525

5651

1503

500

2237

6.50E−232

sp:[LN:TRPE_ACICA]

[AC:P23315] [GN:TRPE]

[OR

ACINETOBACTER

CALCOACETICUS

]

[EC:4.1.3.27]

[DE:ANTHRANILATE

SYNTHASE COMPONENT 1,]

[SP:P23315]

Contig133G

4584663_c1_24

1526

5652

639

212

150

7.60E−09

gp:[GI:d1014699:g1754644]

[LN:D89626] [AC:D89626]

[PN:adenylate cyclase] [GN:cyaD]

[OR:Anabaena sp.] [SR:Anabaena

sp. (strain:PCC7120) DNA]

[EC:4.6.1.1] [DE:Anabaena sp.

cyaD gene for adenylate cyclase,

complete cds.]

Contig133G

6837801_c1_22

1527

5653

840

279

123

3.40E−07

sp:[LN:GSPC_VIBCH]

[AC:P45777] [GN:EPSC]

[OR:

VIBRIO CHOLERAE

]

[DE:EPSC)] [SP:P45777]

Contig138G

10003162_f2_193

1528

5654

243

80

NO-HIT

Contig138G

10203550_c1_590

1529

5655

492

163

NO-HIT

Contig138G

10271880_c3_853

1530

5656

210

69

NO-HIT

Contig138G

10439013_f3_433

1531

5657

186

61

NO-HIT

Contig138G

10548762_f3_336

1532

5658

867

288

695

1.60E−68

sp:[LN:YRAL_ECOLI]

[AC:P45528] [GN:YRAL]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 31.3 KD

PROTEIN IN AGAI-MTR

INTERGENIC REGION (F286)]

[SP:P45528]

Contig138G

10579458_f1_42

1533

5659

522

173

473

5.SOE−45

gp:[GI:e1154545:g2570059]

[LN:NGMSIIDNA]

[AC:AJ004687] [PN:N-4 cytosine-

specificmMethyltransferase]

[OR:

Neisseria gonorrhoeae

]

[DE:

Neisseria gonorrheae

MS11

encoding N-4 cytosine-

specificmethyltransferase.]

Contig138G

10601002_f1_31

1534

5660

279

92

NO-HIT

Contig138G

10664682_f2_199

1535

5661

255

84

NO-HIT

Contig138G

1071927_f2_200

1536

5662

1836

611

382

4.90E−38

pir:[LN:141293] [AC:141293]

[PN:EcoE type 1 restriction

modification enzyme M subunit]

[OR:

Escherichia coli

]

Contig138G

10823437_c2_679

1537

5663

189

62

NO-HIT

Contig138G

10968913_f2_248

1538

5664

1014

337

NO-HIT

Contig138G

10970252_c1_597

1539

5665

225

74

NO-HIT

Contig138G

10979035_c1_482

1540

5666

2046

681

1757

4.80E−181

sp:[LN:REP_ECOLI]

[AC:P09980] [GN:REP]

[OR:

ESCHERICHIA COLI

]

[EC:3.6.1.—] [DE:ATP-

DEPENDENT DNA HELICASE

REP,] [SP:P09980]

Contig138G

11035936_c2_667

1541

5667

1272

423

559

4.20E−54

sp:[LN:HCAD_ECOLI]

[AC:P77650:O08100]

[GN:HCAD:HCAA4]

[OR:

ESCHERICHIA COLI

]

[EC:1.18.1.3] [DE:(EC 1.18.1.3)]

[SP:P77650:O08100]

Contig138G

11115766_f1_14

1542

5668

207

68

NO-HIT

Contig138G

11117265_f2_247

1543

5669

666

221

376

1.00E−34

sp:[LN:ESTE_VIBMI]

[AC:Q07792] [OR:

VIBRIO

MIMICUS

] [EC:3.1.1.2]

[DE:ARYLESTERASE

PRECURSOR, (ARYL-ESTER

HYDROLASE)] [SP:Q07792]

Contig138G

11148927_c1_567

1544

5670

1329

442

NO-HIT

Contig138G

11149160_c2_682

1545

5671

183

60

NO-HIT

Contig138G

11179000_f2_240

1546

5672

1251

416

1684

2.60E−173

gp:[GI:g2462046]

[LN:ACRBDOXN] [AC:Z46863]

[PN:rubredoxin reductase]

[GN:rubB] [FN:necessary for

growth on alkane]

[OR:Acinetobacter sp. ADPI]

[DE:Acinetobacter sp. cysD, cobQ,

sodM, lysS, rubA, rubB, estB,

oxyR,ppk, rntgA, ORF2 and ORF3

genes.] [SP:P42454]

Contig138G

11739518_c1_477

1547

5673

1155

384

1626

3.60E−167

sp:[LN:EFTU_ECOLI]

[AC:P02990] [GN:TUFA,TUFB]

[OR:

ESCHERICHIA COLI

]

[DE:ELONGATION FACTOR TU

(EF-TU) (P-43)] [SP:P02990]

Contig138G

1210327_c3_821

1548

5674

852

283

1006

1.80E−101

sp:[LN:Y4MO_RHISN]

[AC:P55574] [GN:Y4MO]

[OR:RHIZOBIUM SP]

[DE:HYPOTHETICAL

TRANSKETOLASE FAMILY

PROTEIN Y4MO] [SP:P55574]

Contig138G

1214702_c3_845

1549

5675

669

222

730

3.20E−72

gp:[GI:d1039559:g4520134]

[LN:AB024426] [AC:AB024426]

[PN:adenylate kinase] [GN:adk

(ak)] [OR:

Pseudomonas putida

]

[SR:

Pseudomonas putida

(strain:mt-2) DNA] [EC:2.7.4.3]

[DE:

Pseudomonas putida

adk gene

for adenylate kinase, complete

cds.]

Contig138G

1229767_c3_311

1550

5676

1119

372

1487

1.90E−152

sp:[LN:PILT_PSEAE]

[AC:P24559] [GN:PILT]

[OR:

PSEUDOMONAS

AERUGINOSA

]

[DE:TWITCHING MOBILITY

PROTEIN] [SP:P24559]

Contig138G

12397817_c2_740

1551

5677

393

130

95

6.30E−05

pir:[LNB64887] [AC:B64887]

[PN:hypothetical protein b1367]

[OR:

Escherichia coli

]

Contig138G

12542802_f1_150

1552

5678

963

320

1133

6.30E−115

sp:[LN:TRXB_ECOLI]

[AC:P09625] [GN:TRXB]

[OR:

ESCHERICHIA COLI

]

[EC:1.6.4.5] [DE:THIOREDOXIN

REDUCTASE,] [SP:P09625]

Contig138G

12672057_f2_287

1553

5679

1737

578

2345

2.30E−243

sp:[LN:BETA_ECOLI]

[AC:P17444:P77861] [GN:BETA]

[OR:

ESCHERICHIA COLI

]

[EC:1.1.99.1] [DE:CHOLINE

DEHYDROGENASE, (CHD)]

[SP:P17444:P77861]

Contig138G

12714406_c2_657

1554

5680

666

221

163

3.90E−12

sp:[LN:YG77_METJA]

[AC:Q59071] [GN:MJ1677]

[OR:

METHANOCOCCUS

JANNASCHII

]

[DE:HYPOTHETICAL PROTEIN

MJ1677] [SP:Q59071]

Contig138G

12765890_c2_715

1555

5681

483

160

NO-HIT

Contig138G

12792336_f3_474

1556

5682

831

276

187

3.90E−17

gp:[GI:g3806090] [LN:AF079096]

[AC:AF079096] [PN:arginine-

tRNA-protein transferase 1-lp]

[GN:Ate1] [OR:

Mus musculus

]

[SR:house mouse] [DE:

Mus

musculus

arginine-tRNA-protein

transferase 1-lp (Atel)

mRNA,alternative spliced

product, complete cds.]

[NT:alternatively spliced; ATE1-

lp]

Contig138G

12928417_f3_422

1557

5683

864

287

1155

3.00E−117

gp:[GI:g2261504] [LN:AF009672]

[AC:AF009672] [PN:unknown]

[OR:Acinetobacter sp. ADP1]

[DE:Acinetobacter sp. ADP1

vanillate demethylase region,

vanillatedemethylase (vanB) and

vanillate demethylase (vanA)

genes, completecds.] [NT:putative

regulatory protein; similar to pcaU;

ORF8]

Contig138G

12970082_c1_607

1558

5684

1236

411

552

2.30E−53

sp:[LN:UB1H_ECOLI]

[AC:P25534] [GN:UB1H:VISB]

[OR:

ESCHERICHIA COLI

]

[EC:1.14.13.—] [DE:UBIH

PROTEIN,] [SP:P25534]

Contig138G

13001588_c1_558

1559

5685

549

182

NO-HIT

Contig138G

132337_f3_398

1560

5686

204

67

310

1.00E−27

sp:[LN:RUBR_ACICA]

[AC:P42453]

[OR:

ACINETOBACTER

CALCOACETICUS

]

[DE:RUBREDOXIN (RD)]

[SP:P42453]

Contig138G

135260_c3_782

1561

5687

774

257

577

5.20E−56

sp:[LN:YPT5_PSEAE]

[AC:P24562]

[OR:

PSEUDOMONAS

AERUGINOSA

]

[DE:HYPOTHETICAL 24.5 KD

PROTEIN IN PILT 5′REGION

(ORF5)] [SP:P24562]

Contig138G

1362551_c1_591

1562

5688

1323

440

360

5.20E−33

gp:[GI:g3883031] [LN:AF074611]

[AC:AF074611] [PN:unknown]

[GN:Y1030] [OR:

Yersinia pestis

]

[DE:

Yersinia pestis

plasmid pMT-

1, complete plasmid sequence.]

[NT:o418; 37 pct identical (5 gaps)

to 75 residues of]

Contig138G

13678800_c1_504

1563

5689

924

307

278

2.50E−24

gp:[GI:g146791] [LN:ECOMCR]

[AC:M24927] [GN:mcrB]

[OR:

Escherichia coli

] [SR:

E.coli

(strain K12) CR63 DNA clone

pRAB13] [DE:

E.coli

McrB and

McrC protein genes, complete

cds.] [NT:33kD protein (put.);

putative]

Contig138G

13680167_c3_855

1564

5690

312

103

NO-HIT

Contig138G

13775278_c2_658

1565

5691

519

172

392

2.10E−36

sp:[LN:VDLD_HELPY]

[AC:O05729]

[GN:VDLD:HP0891]

[OR:

HELICOBACTER PYLORI

]

[SR:,

CAMPYLOBACTER

PYLORI

] [DE:PROTEIN VDLD]

[SP:O05729]

Contig138G

13790937_c1_522

1566

5692

525

174

NO-HIT

Contig138G

13862712_f1_146

1567

5693

1092

363

NO-HIT

Contig138G

13865942_f3_438

1568

5694

1347

448

1207

9.10E−123

sp:[LN:ARCD_ECOLI]

[AC:P77429] [GN:YDGI]

]OR:

ESCHERICHIA COLI

]

[DE:PUTATIVE

ARGININE/ORNITHINE

ANTIPORTER] [SP:P77429]

Contig138G

13944077_c1_596

1569

5695

408

135

NO-HIT

Contig138G

14334686_f2_201

1570

5696

501

166

NO-HIT

Contig138G

14345012_c2_640

1571

5697

1428

475

218

5.20E−15

sp:[LN:TISK_ECOLI]

[AC:P05719] [GN:HSDS:HSS]

[OR:

ESCHERICHIA COLI

]

[DE:TYPE I RESTRICTION

ENZYME ECOKI SPECIFICITY

PROTEIN (S PROTEIN)]

[SP:P05719]

Contig138G

1444837_c2_721

1572

5698

330

109

NO-HIT

Contig138G

14459777_f3_373

1573

5699

789

262

114

1.90E−06

sp:[LN:DICA_ECOLI]

[AC:P06966] [GN:DICA]

[OR:

ESCHERICHIA COLI

]

[DE:REPRESSOR PROTEIN OF

DIVISION INHIBITION GENE

DICB] [SP:P06966]

Contig138G

14464712_c2_765

1574

5700

1257

418

624

5.50E−61

gp:[GI:g2291144]

[LN:CELF17A9] [AC:AF016417]

[GN:F17A9.4]

[OR:

Caenorhabditis elegans

]

[SR:

Caenorhabditis elegans

strain=Bristol N2]

[DE:

Caenorhabditis elegans

cosmid F17A9.] [NT:similar to

NADH oxidases]

Contig138G

14502251_c1_581

1575

5701

201

66

NO-HIT

Contig138G

14587527_f3_327

1576

5702

405

134

508

1.10E−48

gp:[GI:g3241975] [LN:SSU85710]

[AC:U85710] [PN:transposase]

[OR:

Sulfotobus solfataricus

]

[DE:

Sulfolobus solfataricus

insertion element ISC1041,

transposasegene, complete cds.]

Contig138G

14626452_c1_518

1577

5703

801

266

384

1.50E−35

gp:[Gt:g2228232] [LN:PPU24215]

[AC:U24215] [PN:p-cumic alcohol

dehydrogenase] [GN:cymB]

[FN:converts p-cumic alcohol +

NAD to p-cumic]

[OR:

Pseudomonas putida

]

[DE:

Pseudomonas putida

p-

cymene catabolism (cym) and p-

cumatecatabotism (cmt) operons

and enol-coenzyme A hydratase

gene,complete cds.] [NT:CymB]

Contig138G

1463192_f2_258

1578

5704

3702

1233

3976

0

pir:[LN:XYECMH]

[AC:B65209:JH0096:A32644:B54

337:A54337:506691] [PN:5-

methyltetrahydrofotate--

homocysteine S-

methyltransferase,:methionine

synthase:tetrahydropteroylglutamat

e methyltransferase] [GN:metH]

[CL:cobatamin-dependent

methionine synthase]

[OR:

Escherichia coli

]

[EC:2.1.1.13] [MP:91 min]

Contig138G

14642250_c1_595

1579

5705

423

140

NO-HIT

Contig138G

14645287_f2_293

1580

5706

1428

475

302

1.10E−43

pir:[LN:C69757] [AC:C69757]

[PN:transporter homolog ycel]

[GN:yccl] [OR:

Bacillus subtilis

]

Contig138G

14647187_c2_634

1581

5707

219

72

NO-HIT

Contig138G

14926875_f1_44

1582

5708

624

207

577

5.20E−56

gp:[GI:e1264023:g2959334]

[LN:ASA224767] [AC:AJ224767]

[PN:hypothetical protein]

[GN:ORFA] [OR:Acinetobacter

sp. ADPI] [DE:Acinetobacter sp.

ADPI Ion gene and ORFs.]

[NT:31% identical to YgfA

(hypothetical protein)]

Contig138G

15105040_c3_793

1583

5709

2403

800

384

4.60E−33

sp:[LN:YZ42_METJA]

[AC:Q60297] [GN:MJECL42]

[OR:

METHANOCOCCUS

JANNASCHII

]

[DE:HYPOTHETICAL PROTEIN

MJECL42] [SP:Q60297]

Contig138G

15110677_c2_689

1584

5710

714

237

544

1.60E−52

sp:[LN:YBBA_ECOLI]

[AC:P31219:P77322] [GN:YBBA]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL ABC

TRANSPORTER ATP-BINDING

PROTEIN YBBA]

[SP:P31219:P77322]

Contig138G

156292_f3_387

1585

5711

552

183

148

1.60E−10

sp[LN:CUTF_ECOLI]

[AC:P40710] [GN:CUTF:NLPE]

[OR:

ESCHERICHIA COLI

]

[DE:COPPER HOMEOSTASIS

PROTEIN CUTF PRECURSOR

(LIPOPROTEIN NLPE)]

[SP:P40710]

Contig138G

15663580_f2_217

1586

5712

411

136

141

8.30E−10

gp:[GI:g3650031]

[LN :ATAC005396]

[AC:AC005396] [PN:putative

proline-rich cell wall protein]

[GN:T26120.5] [OR:

Arabidopsis

thaliana

] [SR:thale cress]

[DE:

Arabidopsis thaliana

chromosome II BAC T26120

genomic sequence,complete

sequence.]

Contig138G

15900312_c1_585

1587

5713

480

159

NO-HIT

Contig138G

15913177_c3_817

1588

5714

807

268

301

9.30E−27

pir:[LN:C69230] [AC:C69230]

[PN:conserved hypothetical

protein MTH973] [GN:MTH973]

[CL:hypothetical protein MJ0915]

[OR:

Methanobacterium

thermoautotrophicum

]

Contig138G

16140665_c2_704

1589

5715

708

235

758

3.50E−75

sp:[LN:UREG_SYNY3]

[AC:P72955]

[GN:UREG:SLL0643]

[OR:SYNECHOCYSTIS SP]

[SR:PCC 6803,] [DE:UREASE

ACCESSORY PROTEIN UREG]

[SP:P72955]

Contig138G

16406250_c1_481

1590

5716

186

61

NO-HIT

Contig138G

164127_c3_805

1591

5717

2106

701

2444

7.50E−254

sp:[LN:BETT_ECOLI]

[AC:P17447] [GN:BETT]

[OR:

ESCHERICRIA COLI

]

[DE:HIGH-AFFINITY CHOLINE

TRANSPORT PROTEIN]

[SP:P17447]

Contig138G

16454437_f3_391

1592

5718

564

187

NO-HIT

Contig138G

16582252_c2_631

1593

5719

210

69

NO-HIT

Contig138G

16829038_f2_242

1594

5720

915

304

1342

4.50E−137

sp:[LN:ESTR_ACICA]

[AC:P52667] [GN:ESTR]

[OR:

ACINETOBACTER

CALCOACETICUS

]

[DE:ESTERASE OPERON

TRANSCRIPTIONAL

REGULATOR] [SP:P52667]

Contig138G

16834542_c1_594

1595

5721

957

318

807

2.20E−80

pir:[LN:S58142] [AC:S58142]

[PN:coat protein] [OR:phage

SPPI]

Contig138G

17037502_c2_698

1596

5722

945

314

1240

2.90E−126

gp:[GI:g2665721] [LN:AF035608]

[AC:AF035608] [PN:ATP

sulfurylase small subunit]

[GN:cysD] [OR:

Pseudomonas

aeruginosa

] [DE:

Pseudomonas

aeruginosa

ATP sulfurylase small

subunit (cysD) and ATPsulfurylase

GTP-binding subunit/APS kinase

(cysN) genes, completecds.]

Contig138G

17040643_c1_615

1597

5723

3267

1088

578

6.20E−66

sp:[LN:MLTD_ECOLI]

[AC:P23931:P32982:P77350]

[GN:MLTD:DNIR]

[OR:

ESCHERICHIA COLI

]

[EC:3.21.—] [DE:(MUREIN

HYDROLASE D)

(REGULATORY PROTEIN

DNIR)]

[SP:P23931:P32982:P77350]

Contig138G

175276_f2_294

1598

5724

1425

474

134

1.20E−05

sp:[LN:YBFM_ECOLI]

[AC:P75733] [GN:YBFM]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 52.8 KD

PROTEIN IN GLNS-FUR

INTERGENIC REGION]

[SP:P75733]

Contig138G

181577_c2_708

1599

5725

1404

467

1693

2.90E−174

sp:[LN:DHE4_HAEIN]

[AC:P43793]

[GN:GDHA:H10189]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:1.4.1.4]

[DE:NADP-SPECIFIC

GLUTAMATE

DEHYDROGENASE, (NADP-

GDH)] [SP:P43793]

Contig138G

19570327_c2_703

1600

5726

483

160

301

9.30E−27

sp:[LN:UREE_KLEAE]

[AC:P18317] [GN:UREE]

[OR:

KLEBSIELLA

AEROGENES

] [DE:UREASE

ACCESSORY PROTEIN UREE]

[SP:P18317]

Contig138G

19628893_f2_288

1601

5727

1653

550

1577

5.60E−162

sp:[LN:MQO_ECOLI]

[AC:P33940:P76454:O08017]

[GN:YOJH] [OR:

ESCHERICHIA

COLI

] [EC:1.1.99.16]

[DE:DEHYDROGENASE

(ACCEPTOR)) (MQO)]

[SP:P33940:P76454:O08017]

Contig138G

19694667_f3_473

1602

5728

753

250

467

2.40E−44

sp:[LN:LPTP_ECOLI]

[AC:P23885] [GN:AAT]

[OR:

ESCHERICHIA COLI

]

[EC:2.3.2.—]

[DE:LEUCYL/PHENYLALANYL-

TRNA--PROTEIN

TRANSFERASE,] [SP:P23885]

Contig138G

19720457_c1_588

1603

5729

192

63

NO-HIT

Contig138G

19922807_f3_467

1604

5730

966

321

477

2.10E−45

gp:[GI:g2558847] [LN:AF019110]

[AC:AF019110] [PN:PapII

homolog] [GN:papII]

[OR:

Salmonetla typhimurium

]

[DE:

Salmonella typhimurium

disulfide oxidoreductase (dsbA)

and PapIIhomolog (papII) genes,

complete cds.] [NT:similar to

E.

coli

PapII]

Contig138G

2032308_c2_664

1605

5731

594

197

124

2.30E−14

sp:[LN:PNUC_SALTY]

[AC:P24520] [GN:PNUC]

[OR:

SALMONELLA

TYPHIMURIUM

] [DE:PNUC

PROTEIN] [SP:P24520]

Contig138G

20343801_c3_831

1606

5732

1587

528

1132

8.10E−115

gp:[GI:g4512004] [LN:AF104912]

[AC:AF10491 2] [OR:

Escherichia

coli

] [DE:

Escherichia coli

K30

capsule biosynthesis cluster,

partialsequence.] [NT:OrfX;

Klebsiella K2 Orf3 homologue]

Contig138G

204437_f2_308

1607

5733

396

131

94

0.00093

pir:[LN:670581] [AC:G70581]

[PN:hypothetical protein Rv0911]

[GN:Rv0911] [OR:

Mycobacterium

tuberculosis

]

Contig138G

20506287_f3_443

1608

5734

348

115

NO-HIT

Contig138G

20599128_c2_636

1609

5735

606

201

207

8.50E−17

gp:[GI:g148219] [LN:ECOUW85]

[AC:M87049] [GN:f161]

[FN:unknown] [OR:

Escherichia

coli

] [DE:

E. coli

genomic

sequence of the region from 84.5

to 86.5 minutes.]

Contig138G

20837751_c3_778

1610

5736

405

134

182

3.80E−14

sp:[LN:YFJF_ECOLI]

[AC:P52119:P76603] [GN:YFJF]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 10.8 KD

PROTEIN IN SMPA-SMPB

INTERGENIC REGION (F102)]

[SP:P52119:P76603]

Contig138G

2128900_f3_337

1611

5737

636

211

419

2.90E−39

sp:[LN:YGGA_ECOLI]

[AC:P11667] [GN:YGGA]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 23.2 KD

PROTEIN IN SBM-FBA

INTERGENIC REGION (ORF 5)]

[SP:P11667]

Contig138G

21500003_f1_56

1612

5738

837

278

380

3.90E−35

pir:[LN:F64919] [AC:F64919]

[PN:probable iron-sulfur protein

b1628 precursor:rnfB protein

homolog] [CL:conserved

hypothetical protein

H11684:ferredoxin 2[4Fe-45]

homology] [OR:

Escherichia coli

]

Contig138G

21503178_f2_241

1613

5739

969

322

1413

1.40E−144

pir:[LN:S57530] [AC:S57530]

[PN:carboxyl esterase]

[CL:carboxyl esterase]

[OR:

Acinetobacter calcoaccticus

]

Contig138G

21506527_c3_780

1614

5740

501

166

768

3.00E−76

gp:[GI:e1371365:g4164224]

[LN:ABDNAFUR] [AC:Y14980]

[PN:ferric uptake regulator]

[GN:fur] [OR:

Acinetobacter

baumannii] [DE:

Acinetobacter

baumannii

fur gene.]

Contig138G

21572183_c2_699

1615

5741

1617

538

1558

1.40E−161

gp:[GI:g2665722] [LN:AF035608]

[AC:AF035608] [PN:ATP

sulfurylase GTP-binding

subunitlAPS kinase] [GN:cysN]

[OR:

Pseudomonas acruginosa

]

[DE:

Pseudomonas aeruginosa

ATP

sulfurylase small subunit (cysD)

and ATPsulfutylase GTP-binding

subunit/APS kinase (cysN) genes,

completecds.] [NT:fusion of the

ATP sulfurylase GTP-binding

subunit]

Contig138G

21602153_c2_675

1616

5742

789

262

780

1.60E−77

sp:[LN:Y4MP_RHISN)

[AC:P55575] [GN:Y4MP]

[OR:RHIZOBIUM SP]

[EC:1.—.—.—]

[DE:PUTATIVE SHORT-

CHAIN TYPE

DEHYDROGENASE/REDUCTA

SE Y4MP,] [SP:P55575]

Contig138G

21604540_f3_381

1617

5743

186

61

NO-HIT

Contig138G

21650252_c3_873

1618

5744

462

153

NO-HIT

Contig138G

21679750_c1_568

1619

5745

264

87

NO-HIT

Contig138G

21697187_f1_90

1620

5746

1302

433

568

1.30E−92

pir:[LN:H64636] [AC:H64636]

[PN:proline/betaine transporter]

[OR:

Helicobacter pylori

]

Contig138G

21913267_c2_647

1621

5747

2004

667

NO-HIT

Contig138G

2228500_f3_389

1622

5748

1329

442

1306

2.90E−133

sp:[LN:YTFL_ECOLI]

[AC:P39319) IGN:YTFL]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 49.8 KD

PROTEIN IN CYSQ-MSRA

INTERGENIC REGION]

[SP:P39319]

Contig138G

2241012_c3_770

1623

5749

3087

1028

1489

1.70E−178

gp:[GI:g4063380] [LN:AF095845]

[AC:AF095845] [PN:cell

division/stress response protein]

[GN:ftsK] [FN:required for growth

and pathogenicity on bean]

[OR:

Pseudomonas syringae

]

[DE:

Pseudomonas syringae

cell

division/stress response protein

(ftsK)and periplasmic chaperone

protein (lolA) genes, complete

cds.] [NT:FtsK]

Contig138G

22656250_f1_332

1624

5750

1680

559

218

6.30E−14

gp:[GI:g3549118] [LN:AF083252]

[AC:AF083252] [PN:pilin

biosynthetic protein] [GN:fimL]

[OR:

Pseudormonas aeruginosa

]

[DE:

Pseudormonas aeruginosa

enoyl-CoA hydratase gene, partial

cds; pilinbiosynthetic protein

(fimL) gene, complete cds; and

unknown gene.] [NT:FimL: similar

to

Pseudomonas acruginosa

PilL]

Contig138G

22682686_c2_733

1625

5751

456

151

NO-HIT

Contig138G

22687535_c1_616

1626

5752

1842

613

1109

2.20E−112

gp:[GI:g4155770] [LN:AE001544]

[AC:AE001544:AE001439]

[PN:putative] [GN:jhp1173]

[OR:

Helicobacter pylori

J99]

[DE:

Helicobacter pylori

, strain J99

section 105 of 132 of the

completegenome.] [NT:similar to

H. pylori

26695 gene HP1252]

Contig138G

22692536_f2_306

1627

5753

1122

373

751

1.90E−74

sp:[LN:YFIT_PSEAE]

[AC:P33642:Q51527]

[OR:

PSEUDOMONAS

AERUGINOSA

]

[DE:HYPOTHETICAL 39.5 KD

OXIDOREDUCTASE IN FIMT

3′REGION (DADA*) (ORFZ)]

[SP:P33642:Q51527]

Contig138G

22897812_f1_52

1628

5754

2469

822

3669

0

gp:[GI:e1264024:g2959335]

[LN:ASA224767] [AC:AJ224767]

[PN:Lon-protease] [GN:Ion]

[OR:Acinetobacter sp. ADPI]

[DE:Acinetobacter sp. ADPI Ion

gene and ORFs.]

Contig138G

22900251_f1_107

1629

5755

1266

421

1250

2.50E−127

gp:[GI:g4545128] [LN:AF079997]

[AC:AF079997] [PN:DctA]

[GN:dctA] [OR:

Pseudomonas

putida

] [DE:

Pseudormonas putida

aerotaxis receptor Aer (aer) and

DctA (dctA)genes, complete cds;

and unknown gene.] [NT:similar to

C4 dicarboxylate transporters.]

Contig138G

23443837_c3_838

1630

5756

201

66

NO-HIT

Contig138G

23476577_f2_222

1631

5757

1110

369

173

7.60E−11

pir:[LN:S75791] [AC:S75791]

[PN:hypothetical protein slr0841]

[OR:Synechocystis sp.] [SR:PCC

6803, , PCC 6803] [SR:PCC 6803,]

Contig138G

23492887_c1_502

1632

5758

3276

1091

772

5.50E−79

gp:[GI:g551948]

[LN:PTITETLMOB]

[AC:M63891:X15670]

[OR:Plasmid pTB19] [SR:Plasmid

pTB19 DNA] [DE:Plasmid

pTB19 (from

Bacillus

stearothermophilus

)

replicationprotein (rep),

tetracycline-resistance protein

(tetL), mobilizableproteins (mob),

and bleomycin-resistance (bleO)

genes, completecds.] [NT:ORF]

Contig138G

23515760_c2_736

1633

5759

549

182

NO-HIT

Contig138G

23594052_c2_641

1634

5760

978

325

NO-HIT

Contig138G

23618752_f2_160

1635

5761

429

142

116

3.70E−07

gp:[GI:g1871365] [LN:H1U68399]

[AC:U68399] [PN:haemocin

immunity protein] [GN:hmcI]

[FN:confers immunity to

H.

influenzae

bacteriocin]

[OR:

Haemophilus influenzae

]

[DE:

Haemophilus influenzae

hmcD, putative haemocin

processing protein(hmcC), putative

ABC transporter (hmcB). putative

haemocinstructural protein

(hmcA), and haemocin immunity

protein (hmcI)genes, complete

cds.] [NT:bacteriocin immunity

protein]

Contig138G

23620625_f3_379

1636

5762

825

274

926

5.50E−93

gp:[GI:e1264026:g2959337]

[LN:ASA224767] [AC:AJ224767]

[PN:hypothetical protein]

[GN:ORFD] [OR:Acinetobacter

sp ADPI] [DE:Acinctobacter sp.

ADPI Ion gene and ORFs.]

[NT:39% identical to YgiD

(hypothetical protein)] [RE:

Contig138G

23625438_c1_587

1637

5763

564

187

NO-HIT

Contig138G

23650067_c2_757

1638

5764

648

215

165

2.40E−12

sp:[LN:YGFB_ECOLI]

[AC:P25533] [GN:YGFB]

[OR:

ESCHERICHIA COLI

]

[DE:(F194)] [SP:P25533]

Contig138G

23692568_f2_279

1639

5765

213

70

NO-HIT

Contig138G

23697132_c2_690

1640

5766

2463

820

1086

6.10E−110

gp:[GI:e352365:g2462050]

[LN:ACRBDOXN] [AC:Z46863]

[PN:hypothetical protein]

[GN:ORF3] [OR:Acinetobacter sp.

ADPI] [DE:Acinetobacter sp.

cysD, cobQ, sodM, lysS, rubA,

rubB, estB, oxyR,ppk, mtgA,

ORF2 and ORF3 genes]

]NT:putative] [RE:

Contig138G

23707033_c2_633

1641

5767

558

185

113

7.70E−07

pir:[LN:F69883] [AC:F69883]

[PN:conserved hypothetical

protein ymaD] [GN:ymaD]

[OR:

Bacillus subtilis

]

Contig138G

23712786_c2_668

1642

5768

1227

408

216

1.40E−28

sp:[LN:GUDT_ECOLI]

[AC:Q46916] [GN:YGCZ]

[OR:

ESCHERICHIA COLI

]

[DE:PROBABLE GLUCARATE

TRANSPORTER] [SP:Q46916]

Contig138G

23829193_c3_766

1643

5769

894

297

297

2.40E−21

pir:[LN:H70882] [AC:H70882]

[PN:hypothetical protein Rv2777c]

[GN:Rv2777c]

[OR:

Mycobacterium tuberculosis

]

Contig138G

23879202_f1_57

1644

5770

693

230

774

7.00E−77

sp:[LN:END3_HAEIN]

[AC:P44319] [GN:NTH:H11689]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:4.2.99.18]

[DE:LYASE)] [SP:P44319]

Contig138G

24042052_c2_700

1645

5771

1620

539

1571

2.40E−161

gp:[GI:d1024559:g2662054]

[LN:AB004651] [AC:AB004651]

[PN:isocitrate lyase]

[OR:

Hyphomicrobium

methylovorum

]

[SR:

Hyphomicrobium

methylovorum

(strain:GML2) DNA]

[DE:

Hyphomicrobium

methylovorum

gene for isocitrate

lyase,inorganicphosphate

transporter,methionine

synthase,complete and partial cds.]

Contig138G

24095908_c2_649

1646

5772

216

71

NO-HIT

Contig138G

24218840_c1_605

1647

5773

1659

552

1143

5.50E−116

pir:[LN:S56342]

[AC:S56342:A65221]

[PN:hypothetical 61.7K protein

(basS-adiY intergenic region):yidB

protein] [GN:yjdB]

[OR:

Escherichia coli

]

Contig138G

24251275_c1_601

1648

5774

759

252

NO-HIT

Contig138G

24304142_c3_772

1649

5775

780

259

418

3.70E−39

sp:[LN:YIAD_ECOLI]

[AC:P37665] [GN:YIAD]

[OR:

ESCHERICHIA COLI

]

[DE:PRECURSOR (O219)]

[SP:P37665]

Contig138G

24304528_c3_841

1650

5776

687

228

366

1.20E−33

gp:[GI g2130643] [LN:AF000579]

[AC:AF000579] [PN:urease

accessory protein EF] [GN:ureEF]

[OR:

Bordetella bronchiseptica

]

[DE:

Bordetella bronchiseptica

LysR transcriptional activator

homolog(bbuR), urease accessory

protein D (ureD), urease

structuralsubunit A (ureA), urease

accessory protein J (ureJ),

ureasestructural subunits B (ureB)

and C (ureC), urease

accessory,proteins EF (ureEF) and

G (ureG) genes, complete cds.]

[NT:UreEF]

Contig138G

24390712_c3_795

1651

5777

1356

451

NO-HIT

Contig138G

24406337_c2_627

1652

5778

864

287

746

6.50E−74

sp:[LN:YAFJ_HAEIN]

[AC:P44098] [GN:H11037]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

H11037] [SP:P44098]

Contig138G

24415877_f3_345

1653

5779

492

163

NO-HIT

Contig138G

24415927_f3_382

1654

5780

555

184

367

9.40E−34

sp:[LN:YHHF_HAEIN]

[AC:P44869] [GN:H10767]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

H10767] [SP:P44869]

Contig138G

24422692_c3_792

1655

5781

2055

684

1509

9.10E−155

pir:[LN:E70682] [AC:E70682]

[PN:probable gamma-

glutamyltranspeptidase precursor]

[GN:ggtB] [OR:

Mycobacterium

tuberculosis

]

Contig138G

24469437_c2_719

1656

5782

1347

448

517

1.20E−49

sp:[LN:DNAB_ECOLI]

[AC:P03005]

[GN:DNAB:GROP:GRPA]

[OR:

ESCHERICHIA COLI

]

[EC:3.6.1.—] [DE:REPLICATIVE

DNA HELICASE,] [SP:P03005]

Contig138G

24506250_c3_773

1657

5783

468

155

584

9.50E−57

sp:[LN:DUT_ECOLI]

[AC:P06968]

[GN:DUT:DNAS:SOF]

[OR:

ESCHERICHIA COLI

]

[EC:3.6.1.23] [DE:(DUTPASE)

(DUTP PYROPHOSPHATASE)]

[SP:P06968]

Contig138G

24617316_c2_729

1658

5784

654

217

NO-HIT

Contig138G

24640832_c3_791

1659

5785

1530

509

1348

1.00E−137

gp:[GI:g3378277] [LN:AF079317]

[AC:AF079317] [PN:putative

aromatic efflux pump inner

membrane] [GN:orf121]

[OR:

Sphingomonas

aromaticivorans

]

[DE:

Sphingomonas

aromaticivorans

plasmid pNL1,

complete plasmidsequence.]

[NT:putative inner membrane

component efflux pump]

Contig138G

24640902_c3_879

1660

5786

1329

442

1039

5.80E−105

pir:[LN:S76440] [AC:S76440]

[PN:hypothetical protein]

[CL:aminopeptidase P]

[OR:Synechocystis sp.] [SR:PCC

6803, , PCC 6803] [SR:PCC 6803,]

Contig138G

24648291_f3_407

1661

5787

1014

3337

369

1.80E−44

pir:[LN:C70643] [AC:C70643]

[PN:hypothetical protein Rv0712]

[GN:Rv0712] [OR:

Mycobacterium

tuberculosis

]

Contig138G

24648408_c1_561

1662

5788

882

293

425

6.70E−40

gp:[GI:e331505:g2340842]

[LN:AEY13732] [AC:Y13732]

[PN:urease accessory protein]

[GN:ureD1] [OR:

Ralstonia

eutrophal

[DE:

Alcatigenes

eutrophus

genes for ureases,

ureD1, ureD2, ureA, ureB,and

ORF1, ORF2]

Contig138G

24648567_c3_808

1663

5789

426

141

NO-HIT

Contig138G

24666561_c2_741

1664

5790

696

231

NO-HIT

Contig138G

24785932_c3_858

1665

5791

492

163

NO-HIT

Contig138G

24803450_f2_291

1666

5792

309

102

NO-HIT

Contig138G

24804626_c1_600

1667

5793

4365

1454

207

3.70E−18

gp:[GI:g1256742]

[LN:TRBR272P] [AC:L04603]

[PN:R27-2 protein]

[OR:

Trypanosoma cruzi

]

[SR:

Trypanosoma cruzi

(strain

Sylvio X-10) DNA]

[DE:

Trypanosoma cruzi

R27-2

protein gene, complete cds.]

Contig138G

24895332_c2_661

1668

5794

357

118

319

1.10E−28

sp:[LN:FKBP_NEIME]

[AC:P25138] [GN:FBP]

[OR:

NEISSERIA

MENINGITIDIS

] [EC:5.2.1.8]

[DE:(EC 5.21.8) (ROTAMASE)]

[SP:P25138]

Contig138G

2522140_f1_408

1669

5795

1593

530

NO-HIT

Contig138G

2525305_c1_592

1670

5796

1380

459

NO-HIT

Contig138G

2540887_c2_761

1671

5797

867

288

147

3.60E−08

gp:[GI:g1086620]

[LN:CELD2024] [AC:U4101 I]

[GN:D2024.2] [OR:

Caenorhabditis

elegans

] [SR:

Caenorhabditis

elegans

strain=Bristol N2]

[DE:

Caenorhabditis elegans

cosmid D2024.]

Contig138G

25524217_c3_857

1672

5798

192

63

NO-HIT

Contig138G

25581250_f1_104

1673

5799

843

280

334

2.90E−30

sp:[LN:PAAF_ECOLI]

[AC:P76082:P78288:053014]

[GN:PAAF] [OR:

ESCHERICHIA

COLI

] [EC:4.2.1.17]

[DE:PROBABLE ENOYL-COA

HYDRATASE PAAF,]

[SP:P76082:P78288:053014]

Contig138G

256952_f1_43

1674

5800

264

87

NO-HIT

Contig138G

25869000_f1_87

1675

5801

792

263

323

4.30E−29

sp:[LN:YEAM_ECOLI]

[AC:P7624] [GN:YEAM]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL

TRANSCRIPTIONAL

REGULATOR IN GAPA-RND

INTERGENIC REGION]

[SP:P76241]

Contig138G

25907318_c1_589

1676

5802

468

155

NO-HIT

Contig138G

26047037_f3_376

1677

5803

1092

363

NO-HIT

Contig138G

26048436_f2_312

1678

5804

1140

379

1313

5.30E−134

pir:[LN:S54702] [AC:S54702]

[PN:pilU protein] [CL:pilT

protein] [OR:

Pseudomonas

aeruginosa

]

Contig138G

26266678_f3_338

1679

5805

423

140

224

1.30E−18

gp:[GI:e301541:g2995418]

[LN:BCMOSMRGI]

[AC:Y09027] [PN:regulatory

protein] [GN:merR] [OR:

Bacillus

cereus

] [DE:

Bacillus cereus

merR

gene and 2 ORF's.]

Contig138G

26304712_c1_516

1680

5806

348

115

NO-HIT

Contig138G

26350715_c2_676

1681

5807

1347

448

985

3.10E−99

sp:[LN:TUB3_AGRV]

[AC:P70786] [GN:TTUB]

[OR:

AGROBACTERIUM VITIS

]

[DE:PUTATIVE TARTRATE

TRANSPORTER] [SP:P70786]

Contig138G

26355013_c2_722

1682

5808

768

255

NO-HIT

Contig138G

26375143_c2_758

1683

5809

306

101

NO-HIT

Contig138G

265662_f3_468

1684

5810

891

296

904

1.20E−90

pir:[LN:CCECID]

[AC:B31877:D64863] [PN:cell

division inhibitor minD:septum

site-determining protein minD]

[GN:minD] [CL:cell division

inhibitor minD] [OR:

Escherichia

coli

] [MP:26 min]

Contig138G

26579437_c3_876

1685

5811

324

107

NO-HIT

Contig138G

26601538_c2_725

1686

5813

273

90

NO-HIT

Contig138G

26641283_c1_479

1687

5813

750

249

592

1.30E−57

sp:[LN:YIGJ_ECOLI]

[AC:P27846] [GN:YIGJ]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 22.5 KD

PROTEIN IN RECQ-PLDB

INTERGENIC REGION]

]SP:P27846]

Contig138G

26672781_c1_534

1688

5814

1032

343

1208

7.10E−123

sp:[LN:Y4MN_RHISN]

[AC:P55573] [GN:Y4MN]

[OR:RHIZOBIUM SP]

[DE:HYPOTHETICAL

TRANSKETOLASE FAMILY

PROTEIN Y4MN] [SP:P55573]

Contig138G

273937_c3_819

1689

5815

1266

421

NO-HIT

Contig138G

2790637_c1_586

1690

5816

234

77

NO-HIT

Contig138G

2822340_c2_626

1691

5817

807

268

144

4.30E−08

pir:[LN:F70858] [AC:F70858]

[PN:hypothetical protein Rv3027c]

[GN:Rv3027c]

[OR:

Mycobacterium tuberculosis

]

Contig138G

2837758_c2_697

1692

5818

1566

521

2420

2.60E−251

sp:[LN:SYK_ACICA]

[AC:Q43990] [GN:LYSS]

[OR:

ACINETOBACTER

CALCOACETICUS

] [EC:6.1.1.6]

[DE:LYSYL-TRNA

SYNTHETASE, (LYSINE--TRNA

LIGASE) (LYSRS)] [SP:Q43990]

Contig138G

2927291_c1_484

1693

5819

1188

395

87

0.00078

pir:[LN:F69825] [AC:F69825]

[PN:sodium-dependent transporter

homolog yhdH] [GN:yhdH]

[CL:gamma-aminoburyric acid

transporter] [OR:

Bacillus subtitis

]

Contig138G

29308375_c1_609

1694

5820

903

300

497

1.60E−47

sp:[LN:YW34_MYCTU]

[AC:Q10872] [GN:MTCY39.34]

[OR:

MYCOBACTERIUM

TUBERCULOSIS

]

[DE:HYPOTHETICAL

TRANSCRIPTIONAL

REGULATOR CY39.34]

[SP:Q10872]

Contig138G

29330062_c1_572

1695

5821

7515

2504

514

2.20E−44

gp:[GI:g1666683] [LN:U41852]

[AC:U41852] [GN:hsf]

[OR:

Haemophilus influenzae

]

[DE:

Haemophilus influenzae

hsf

gene, complete cds.]

Contig138G

29390930_f1_74

1696

5822

1752

583

1174

2.90E−119

sp:[LN:ARS_PSEAE]

[AC:P51691] [GN:ATSA]

[OR:

PSEUDOMONAS

AERUGINOSA

] [EC:3.1.6.1]

[DE:ARYLSULFATASE, (ARYL-

SULPHATE

SULPHOHYDROLASE)]

[SP:P51691]

Contig138G

29489562_f3_435

1697

5823

1518

505

1917

5.30E−198

pir:[LN:S15181]

[AC:S15181:JQ1230:H64757:S10

900] [PN:betaine-aldehyde

dehydrogenase, :betB protein]

[GN:betB] [CL:aldehyde

dehydrogenase (NAD+):aldehyde

dehydrogenase homology]

[OR:

Escherichia coli

] [EC: 1.21.8]

[MP:7.5 min]

Contig138G

29579063_c1_573

1698

5824

837

278

181

1.20E−25

gp:[GI:g3283200] [LN:AF058703]

[AC:AF058703] [PN:Iipoprotein

Plp4] [GN:plpD] [OR:

Pasteurella

haemolytica

] [DE:

Pasteurella

haemolytica

lipoprotein Plp4

(plpD) gene, complete cds.]

Contig138G

29773467_c3_887

1699

5825

1068

355

906

2.70E−105

sp:[LN:YEJB_ECOLI]

[AC:P33914:P76448] [GN:YEJB]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL ABC

TRANSPORTER PERMEASE

PROTEIN YEJB]

[SP:P33914:P76448]

Contig138G

29892966_c1_598

1700

5826

1113

370

NO-HIT

Contig138G

29960063_c3_862

1701

5827

225

74

NO-HIT

Contig138G

30100678_f1_374

1702

5828

480

159

NO-HIT

Contig138G

30117027_c2_726

1703

5829

336

111

NO-HIT

Contig138G

30166312_c1_582

1704

5830

348

115

NO-HIT

Contig138G

30369077_c2_737

1705

5831

372

123

NO-HIT

Contig138G

31262_c2_678

1706

5832

639

212

NO-HIT

Contig138G

31268_f3_388

1707

5833

1014

337

441

1.40E−41

gp:[GI:g3643996] [LN:AF087482]

[AC:AF087482] [PN:putative

regulatory protein] [GN:ohbR]

[OR:

Pseudomonas aeruginosa

]

[DE:

Pseudomonas aeruginosa

clcC

and ohbH genes, Lys-R type

regulatoryprotein (clcR),

chlorocatechol-1,2-dioxygenase

(clcA),chloromuconate

cycloisomerase (clcB),

dienelactone hydrolase(clcD),

maleylacetate reductase (clcE),

transposase (tnpA),ATP-binding

protein (tnpB), putative regulatory

protein (ohbR), o-halobenzoate

dioxygenase reductase (ohbA), o-

halobenzoatedioxygenase alpha

subunit (ohbB), o-halobenzoate

dioxygenase betasubunit (ohbC), o-

halobenzoate dioxygenase

ferredoxin (ohbD),putative

membrane spanning protein

(ohbE), ATP-binding

protein(ohbF), putative substrate

binding protein (ohbG), and

putativedioxygenase genes,

complete cds; and unknown gene.]

[NT:similar to Lys-R type

regulatory proteins.]

Contig138G

3131505_c1_515

1708

5834

2022

673

1280

1.70E−130

gp:[GI:e1331963:g4106594]

[LN:YP102KB] [AC:AL031866]

[GN:hmsF] [OR:

Yersinia pestis

]

[DE:

Yersinia pestis

102 kbases

unstable region: from 1 to

119443.] [NT:ORF26, len: 673,

hmsF, 96.9% identity with hmsF]

Contig138G

31423428_f1_40

1709

5835

1041

346

NO-HIT

Contig138G

31440628_c3_868

1710

5836

879

292

119

0.00025

pir:[LN:F70350] [AC:F70350]

[PN:recombination protein RecN]

[GN:recN] [OR:

Aquifex aeolicus

]

Contig138G

3151941_c2_759

1711

5837

381

126

123

6.70E−08

gp:[GI:e258655:g1628369]

[LN:DNINTREG] [AC:X98546]

[GN:gepB] [OR:

Dichelobacter

nodosus

] [DE:

D.nodosus

intB,

regA gepA. gepB, and gepC

genes.]

Contig138G

3229750_c3_806

1712

5838

1011

336

502

4.60E−48

sp:[LN:YEIR_ECOLI]

[AC:P33030:P76444] [GN:YEIR]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 36.1 KD

PROTEIN IN FRUB-SPR

INTERGENIC REGION]

[SP:P33030:P76444]

Contig138G

32546887_c2_672

1713

5839

1368

455

578

4.10E−56

sp:[LN:GLSK_RAT] [AC:P13264]

[OR:

RATTUS NORVEGICUS

]

[EC:3.5.1.2]

[DE:AMIDORYDROLASE)]

[SP:P13264]

Contig138G

3307762_f1_59

1714

5840

2064

687

1257

4.60E−128

sp:[LN:PBP2_HAEIN]

[AC:P44469]

[GN:MRDA:PBP2:H10032]

[OR:

HAEMOPHILUS

INFLUENZAE

] [DE:PENICILLIN

BINDING PROTEIN 2 (PBP-2)]

[SP:P44469]

Contig138G

33259592_f2_321

1715

5841

306

101

110

1.60E−06

sp:[LN:MINE_ECOLI]

[AC:P18198] [GN:MINE]

[OR:

ESCHERICHIA COLI

]

[DE:CELL DIVISION

TOPOLOGICAL SPECIFICITY

FACTOR] [SP:P18198]

Contig138G

3325_c3_768

1716

5842

537

178

274

6.70E−24

sp:[LN:RIMI_ECOLI]

[AC:P09453] [GN:RIMI]

[OR:

ESCHERICHIA COLI

]

[EC:2.3.1.128]

[DE:(ACETYLATING ENZYME

FOR N-TERMINAL OF

RIBOSOMAL PROTEIN 518)]

[SP:P09453]

Contig138G

33385936_f2_243

1717

5843

822

273

881

3.20E−88

gp:[GI:e352209:g2462049]

[LN:ACRBDOXN] [AC:Z46863]

[PN:hypothetical protein]

[GN :ORF2] [OR:Acinetobacter sp.

ADPI] [DE:Acinetobacter sp.

cysD, cobQ, sodM, lysS, rubA,

rubB, estB, oxyR,ppk, mtgA,

ORF2 and ORF3 genes.]

[NT:putative]

Contig138G

33396880_c3_774

1718

5844

1440

479

668

1.20E−65

sp:[LN:PGMU_NEIGO]

[AC:P40390] [GN:PGM]

[OR:

NEISSERIA

GONORRHOEAE] [EC:5.4.2.2]

[DE:PHOSPHOGLUCOMUTASE

(GLUCOSE

PHOSPHOMUTASE) (PGM)]

[SP:P40390]

Contig138G

33400250_c3_794

1719

5845

1632

543

NO-HIT

Contig138G

33480301_c3_812

1720

5846

945

314

200

2.20E−14

gp:[GI:g3644005] [LN:AF087482]

[AC:AF087482] [PN:putative

dioxygenase] [OR:

Pseudomonas

aeruginosa

] [DE:

Pseudomonas

aeruginosa

clcC and ohbH genes,

Lys-R type regulatoryprotein

(clcR), chlorocatechol-1,2-

dioxygenase

(clcA),chloromuconate

cycloisomerase (clcB),

dienelactone hydrolase(clcD),

maleylacctate reductase (clcE),

transposase (tnpA),ATP-binding

protein (tnpB). putative regulatory

protein (ohbR),o-halobenzoate

dioxygenase reductase (ohbA), o-

halobenzoatedioxygenase alpha

subunit (ohbB), o-halobenzoate

dioxygenase betasubunit (ohbC), o

halobenzoate dioxygenase

ferredoxin (ohbD),putative

membrane spanning protein

(ohbE), ATP-binding

protein(ohbF), putative substrate

binding protein (ohbG), and

putativedioxygenase genes,

complete cds; and unknown gene.]

[NT:similar to

Alcaligenes

cutrophus catcchol

]

Contig138G

33757712_c1_524

1721

5847

1497

498

924

8.90E−93

gp:[GI:e1169874:g2598029]

[LN:PSSTYCATA]

[AC:AJ000330]

[PN:Phenylacetaldehyde

dehydrogenase] [GN:styD]

[OR:Pseudomonas sp.]

[SR:Pseudomonas sp]

[DE:Pseudomonas sp. DNA for

styrene catabolism genes.]

Contig138G

3395902_c3_872

1722

5848

300

99

NO-HIT

Contig138G

33992838_c3_816

1723

5849

810

269

291

1.10E−25

gp:[GI:g4160474] [LN:AF109909]

[AC:AF109909] [PN:3-ketoacyl-

CoA reductase PhaB] [GN:phaB]

[OR:

Bacillus megaterium

]

[DE:

Bacillus megatecrium

polyhydroxyalkanoate gene

cluster, completesequence.]

Contig138G

34022043_c2_625

1724

5850

930

309

777

3.40E−77

sp:[LN:ARGB_METJA]

[AC:Q60382]

[GN:ARGB:MJ0069]

[OR:

METHANOCOCCUS

JANNASCHII

] [EC:2.7.2.8]

[DE-(N-ACETYLGLUTAMATE 5-

PHOSPHOTRANSFERASE)]

[SP:Q60382]

Contig138G

34024091_c1_555

1725

5851

459

152

NO-HIT

Contig138G

34027202_f3_375

1726

5852

255

84

NO-HIT

Contig138G

3406693_c3_866

1727

5853

243

80

NO-HIT

Contig138G

34156588_c1_527

1728

5854

495

164

273

8.60E−24

sp:[LN:DEF_THEMA]

[AC:P96113] [GN:DEF]

[OR:

THERMOTOGA

MARITIMA

] [EC:3.5.1.31]

[DE:DEFORMYLASE)]

[SP:P96113]

Contig138G

34175262_f1_114

1729

5855

543

180

NO-HIT

Contig138G

34237702_c2_755

1730

5856

189

62

NO-HIT

Contig138G

34414037_c2_665

1731

5857

327

108

473

5.50E−45

gp:[GI:g2271505] [LN:AF009672]

[AC:AF009672] [PN:unknown]

[OR:Acinetobacter sp. ADPI]

[DE:Acinetobacter sp. ADPI

vanillate demethylase region,

vanillatedemethylase (vanB) and

vanillate demethylase (vanA)

genes, completecds.] [NT:putative

ferredoxin; ORF9]

Contig138G

34417127_c3_874

1732

5858

270

89

NO-HIT

Contig138G

34460925_C3_807

1733

5859

576

191

361

4.10E−33

sp:[LN:YAEQ_ECOLI]

[AC:P52100:P77620] [GN:YAEQ]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 20.9 KD

PROTEIN IN MESJ-CUTF

INTERGENIC REGION]

[SP:P52100:P77620]

Contig138G

34610687_c2_673

1734

5860

1242

413

1105

5.90E−112

sp:[LN:FSR_ECOLI]

[AC:P52067] [GN:FSR]

[OR:

ESCHERICHIA COLI

]

[DE:FOSMIDOMYCIN

RESISTANCE PROTEIN]

[SP:P52067]

Contig138G

3467791_c2_764

1735

5861

1029

342

1024

2.20E−103

sp:[LN:YEJE_ECOLI]

[AC:P33915] [GN:YEJE]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL ABC

TRANSPORTER PERMEASE

PROTEIN YEJE] [SP:P33915]

Contig138G

35213437_c3_869

1736

5862

480

159

NO-HIT

Contig138G

35244752_f1_80

1737

5863

201

66

NO-HIT

Contig138G

35265675_f2_202

1738

5864

321

106

NO-HIT

Contig138G

35437936_f1_39

1739

5865

345

114

NO-HIT

Contig138G

35438213_c2_760

1740

5866

720

239

209

5.20E−17

sp:[LN:YRAP_HAEIN]

[AC:P45301] [GN:H11658]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

H11658 PRECURSOR]

[SP:P45301]

Contig138G

35626390_c3_880

1741

5867

1287

428

528

8.20E−51

pir:[LN:B65075]

[AC:B65075:D47020:JQ0845]

[PN:visC protein] [GN:visC]

[CL:ubiH protein] [OR:

Escherichia

coli

] [MP:63 min]

Contig138G

36017827_c3_870

1742

5868

918

305

NO-HIT

Contig138G

36115707_c2_720

1743

5869

327

108

NO-HIT

Contig138G

36129801_c3_865

1744

5870

534

177

108

0.00041

gp:[GI:g473595] [LN:DMU08218]

[AC:U082J8] [GN:Moe]

[OR:

Drosophila melanogaster

]

[SR:fruit fly] [DE:

Drosophiia

melanogaster

moesin/ezrin/radixin

homolog mRNA, partialcds.]

[NT:moesin/ezrin/radixin

homolog]

Contig138G

36140715_c3_875

1745

5871

381

126

NO-HIT

Contig138G

36140791_f2_320

1746

5872

741

246

222

2.20E−18

sp:[LN:MINC_ECOLI]

[AC:P18196] [GN:MINC]

[OR:

ESCHERICHIA COLI

]

[DE:CELL DIVISION

INHIBITOR MINC] [SP:P18196]

Contig138G

36207563_c1_542

1747

5873

1668

555

1000

7.90E−101

sp:[LN:PITB_ECOLI]

[AC:P43676] [GN:PITB]

[OR:

ESCHERICHIA COLI

]

[DE:PROBABLE LOW-

AFFINITY INORGANIC

PHOSPHATE TRANSPORTER 2]

[SP:P43676]

Contig138G

36228193_c1_603

1748

5874

522

173

NO-HIT

Contig138G

36334625_c3_888

1749

5875

1614

537

1147

2.10E−116

sp:[LN:YEJF_ECOLI]

[AC:P33916] [GN:YEJF]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL ABC

TRANSPORTER ATP-BINDING

PROTEIN YEJF] [SP:P33916]

Contig138G

36570465_c1_604

1750

5876

3456

1151

153

1.00E−07

gp:[GI:e1388752:g4455821]

[LN:BMB18133] [AC:Y18133]

[PN:hypothetical protein]

[OR:Bacteriophage MB78]

[DE:Bacteriophage MB78 ORF1,

ORF2, ORF3, and ORF4.]

[NT:ORF4] [RE:

Contig138G

37537_c3_867

1751

5877

366

121

NO-HIT

Contig138G

39001_c1_543

1752

5878

1386

461

1559

4.60E−160

sp:[LN:SDHD_ECOLI]

[AC:P00926:P78303] [GN:DSDA]

[OR:

ESCHERICHIA COLI

]

[EC:4.2.1.14] [DE:D-SERINE

DEHYDRATASE, (D-SERINE

DEAMINASE)]

[SP:P00926:P78303]

Contig138G

3906508_c2_674

1753

5879

456

151

NO-HIT

Contig138G

3921927_f2_253

1754

5880

627

208

179

7.80E−14

pir:[LN:D71258] [AC:D71258]

[PN:probable glpG protein]

[GN:TP0982] [OR:

Treponema

pallidum

subsp.

pallidum

] [SR:,

syphilis spirochete

]

Contig138G

3928813_c2_738

1755

5881

360

119

NO-HIT

Contig138G

3939592_c3_767

1756

5882

951

316

262

1.30E−22

pir:[LN:H70882] [AC:H70882]

[PN:hypothetical protein Rv2777c]

[GN:Rv2777c]

[OR:

Mycobacterium tuberculosis

]

Contig138G

3960967_c2_747

1757

5883

408

135

NO-HIT

Contig138G

4006303_c3_864

1758

5884

216

71

NO-HIT

Contig138G

4022318_c2_705

1759

5885

579

192

207

8.50E−17

pir:[LN:E70358] [AC:E70358]

[PN:HupE hydrogenase related

function] [GN:hupE] [OR:

Aquifex

aeolicus

]

Contig138G

4095328_c1_552

1760

5886

600

199

NO-HIT

Contig138G

4117813_c3_840

1761

5887

312

103

415

7.70E−39

sp:[LN:URE3_SYNY3]

[AC:P73796]

[GN:UREA:SLR1256]

[OR:SYNECHOCYSTIS SP]

[SR:PCC 6803,] [EC:3.5.1.5]

[DE:UREASE GAMMA

SUBUNIT, (UREA

AMIDOHYDROLASE)]

[SP:P73796]

Contig138G

4120888_c1_574

1762

5888

327

108

NO-HIT

Contig138G

4145175_f1_119

1763

5889

969

322

274

6.70E−24

sp:[LN:YJHH_ECOLI]

[AC:P39359] [GN:YJHH]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 34.9 KD

PROTEIN IN FECI-FIMB

INTERGENIC REGION (F319)]

[SP:P39359]

Contig138G

4345068_f2_310

1764

5890

3606

1201

488

1.60E−77

gp:[GI:g3128266] [LN:AF010496]

[AC:AF010496] [PN:potential

exonuclease] [GN:sbcC]

[OR:

Rhodobacter capsulatus

]

[DE:

Rhodobacter capsulatus

strain

SB1003, partial genome.]

Contig138G

4345260_f2_157

1765

5891

1509

502

552

2.30E−53

sp:[LN:DP3E_ECOLI]

[AC:P03007] [GN:DNAQ:MUTD]

[OR:

ESCHERICHIA COLI

]

[EC:2.7.7.7] [DE:DNA

POLYMERASE III, EPSILON

CHAIN,] [SP:P03007]

Contig138G

4390627_f3_386

1766

5892

333

110

NO-HIT

Contig138G

4407688_c2_637

1767

5893

186

61

NO-HIT

Contig138G

4489177_t2_221

1768

5894

489

162

800

1.20E−79

gp:[GI:e1264025:g2959336]

[LN:ASA224767] [AC:AJ224767]

[PN:hypothetical protein]

[GN:ORFC] [OR:Acinetobacter sp.

ADPI] [DE:Acinetobacter sp.

ADPI Ion gene and ORFs.]

[NT:48% identical to YbeA

(hypothetical protein)]

Contig138G

4501465_f3_385

1769

5895

273

90

NO-HIT

Contig138G

4507193_c3_818

1770

5896

1650

549

515

1.90E−49

gp:[GI:g2981021] [LN:AF047822]

[AC:AF047822] [PN:catabolic

acetolactate synthase] [GN:alsS]

[FN:involved in acetoin synthesis;

condensce two] [OR:

Clostridium

acetobutylicum

] [DE:

Clostridium

acetobutylicum

catabolic

acetolactate synthase (alsS)gene,

complete cds.] [NT:AHAS]

Contig138G

4536500_c3_856

1771

5897

858

285

NO-HIT

Contig138G

4539040_c2_752

1772

5898

2226

741

134

8.70E−08

gp:[GI:g33351421 [LN:AF047484]

[AC:AF047484] [PN:heme

receptor] [GN:hupA] [OR:

Vibrio

vulnificus

] [DE:

Vibrio vulnificus

heme receptor (hupA) gene,

complete cds.]

Contig138G

4565716_c1_599

1773

5899

348

115

NO-HIT

Contig138G

4567500_c3_828

1774

5900

2133

710

3313

0

gp:[GI:e245927:g2462047]

[LN:ACRBDOXN] [AC:Z46863]

[PN:polyphosphate kinase]

[GN:ppk] [OR:Acinetobacter sp.

ADPI] [DE:Acinetobacter sp.

cysD, cobQ, sodM, lysS, rubA,

rubB, estB, oxyR,ppk, mtgA,

ORF2 and ORF3 genes.]

[NT:putative; transcription of ppk

is induced by]

Contig138G

4569017_f2_263

1775

5901

1155

384

1949

2.10E−201

sp:[LN:GALM_ACICA]

[AC:P05149] [GN:MRO]

[OR:

ACINETOBACTER

CALCOACETICUS

] [EC:5.1.33]

[DE:ALDOSE 1-EPIMERASE

PRECURSOR, (MUTAROTASE)]

[SP:P05149]

Contig138G

4585885_c1_546

1776

5902

669

222

459

1.70E−43

sp:[LN:YHGI_ECOLI]

[AC:P46847] [GN:YHGI]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 21.0 KD

PROTEIN IN BIOH-GNTT

INTERGENIC REGION (O191)]

[SP:P46847]

Contig138G

4713942_f1_32

1777

5903

183

60

NO-HIT

Contig138G

4718758_c1_602

1778

5904

717

238

NO-HIT

Contig138G

4722682_f1_134

1779

5905

128

375

1100

2.00E−11

sp:[LN:HEM2_PSEAE]

[AC:Q59643] [GN:HEMB]

[OR:

PSEUDOMONAS

AERUGINOSA

] [EC:42.1.24]

[DE:SYNTHASE) (ALAD)

(ALADH)] [SP:Q59643]

Contig138G

4801693_f3_344

1780

5906

297

98

97

3.80E−05

sp:[LN:YGFE_ECOLI]

[AC:P45580] [GN:YGFE]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 12.6 KD

PROTEIN IN PEPP-SSR

INTERGENIC REGION (O109)]

[SP:P45580]

Contig138G

4806537_c2_662

1781

5907

1263

420

1170

7.60E−119

gp:[GI:g1185391]

[LN:YPU22837] [AC:U22837]

[PN:HmsR] [GN:hmsR]

[FN:involved the regulation of the

hms locus hemin] [OR:

Yersinia

pestis

] [DE:

Yersinia pestis

HmsH

(hmsH), HmsF (hmsF), HmsR

(hmsR), and HmsS(hmsS) genes,

complete cds.] [NT:possible

integral inner membrane protein;

52 kDa,]

Contig138G

4876568_c1_608

1782

5908

387

128

120

6.50E−07

gp:[GI:d1020364:g1944409]

[LN:D87026]

[AC:D87026:D28136]

[PN:membrane protein]

[OR:

Bacillus stearothermophilus

]

[SR:

Bacillus stearothermophilus

(strain:TRBE14) DNA]

[DE:

Bacillus stearothermophilus

glycogen operon genes, complete

cds.] [NT:The OkF is similar to

thc

Alkaligenes eutrophus

]

Contig138G

4880265_f2_313

1783

5909

408

135

182

3.80E−14

gp:[GI:g2961I86] [LN:AF050677]

[AC:AF050677] [PN:lipoprotein]

[GN oprX] [OR:

Pseudomonas

fluorescens

] [DE:

Pseudomonas

fluorescens

ferric uptake regulator

(fur) gene, partialcds; and

lipoprotein (oprX) gene, complete

cds.] [NT:OprX]

Contig138G

4882791_c3_790

1784

5910

1077

358

990

9.00E−100

gp:[GI:g3378278] [LN:AF079317]

[AC:AF079317] [PN:putative

aromatic efflux pump membrane

protein] [GN:orf132]

[OR:

Sphingomonas

aromaticivorans

]

[DE:

Sphingomonas

aromaticivorans

plasmid pNL1,

complete plasmidsequence.]

[NT:putative transmembrane

fusion component efflux pump]

Contig138G

4884625_f1_115

1785

5911

882

293

266

2.00E−45

pir:[LN:S77571] [AC:S77571]

[PN:conserved hypothetical

protein msh:methionine synthase

homolog] [GN:msh]

[OR:

Agrobacterium tumefaciens

]

Contig138G

4884628_c2_702

1786

5912

1704

567

2275

6.10E−236

sp:[LN:UREI_KLEAE]

[AC:P18314] [GN:UREC]

[OR:

KLEBSIELLA

AEROGENES

] [EC:3.5.1.5]

[DE:UREASE ALPHA SUBUNIT.

(UREA AMIDOHYDROLASE)]

[SP:P18314]

Contig138G

4884640_c2_628

1787

5913

459

152

179

7.80E−14

pir:[LN:C64393] [AC:C64393]

[PN:hypothetical protein MJ0747]

[OR:

Methanococcus jannaschii

]

[MP:REV673469-672960]

Contig138G

4884677_f1_67

1788

5914

492

163

560

3.30E−54

gp:[GI:e352633:g2462045]

[LN:ACRBDOXN] [AC:Z46863]

[PN:hypothetical protein]

[GN:ORFX] [OR:Acinetobacter

sp. ADPI] [DE:Acinetobacter sp.

cysD, cobQ,.sodM, tysS, rubA,

rubB, estB, oxyR,ppk, mtgA,

ORF2 and ORF3 genes.]

[NT:putative]

Contig138G

4893840_c2_701

1789

5915

360

119

374

1.70E−34

gp:[GI:e331509:g2340846]

[LN:AEY13732] [AC:Y13732]

[PN:urease, structural subunit]

[GN:ureB] [OR:

Ralstonia

eutropha

] [DE:

Alcaligenes

eutrophus

genes for ureases,

urcD1, urcD2, ureA, ureB,and

ORF1, ORE2.]

Contig138G

506375_c1_547

1790

5916

648

215

320

9.00E−29

pir:[LN:S74353] [AC:S74353]

[PN:carbonic anhydrase

icfA:hypothetical protein

slr0051:hypothetical protein

slr0051] [GN:icfA]

[OR:Synechocystis sp.] [SR:PCC

6803, , PCC 6803] [SR:PCC 6803,]

Contig138G

5164063_c2_644

1791

5917

900

299

242

1.70E−20

sp:[LN:NAC_KLEAE]

[AC:Q08597] [GN:NAC]

[OR:

KLEBSIELLA

AEROGENES

] [DE:CONTROL

PROTEIN)] [SP:Q08597)

Contig138G

5292052_c1_550

1792

5918

699

232

896

8.20E−90

sp:[LN:MTGA_ACICA]

[AC:024849] [GN:MTGA]

[OR:

ACINETOBACTER

CALCOACETICUS

] [EC:2.4.2.—]

[DE:(EC 2.4.2—)

(MONOFUNCTIONAL TGASE)]

[SP:024849]

Contig138G

5292262_f1_147

1793

5919

303

100

NO-HIT

Contig138G

5348462_c2_646

1794

5920

726

241

307

2.10E−27

pir:[LN:S76413] [AC:S76413]

[PN:hypothetical protein]

[OR:Syncchocystis sp.] [SR:PCC

6803, , PCC 6803] [SR:PCC 6803,]

Contig138G

5350683_f1_404

1795

5921

1044

347

431

1.60E−40

sp:[LN:LIPI_PSYIM]

[AC:Q02104] [GN:LIP1]

[OR:

PSYCHROBACTER

IMMOBILIS

] [EC:3.1.1.3]

[DE LIPASE I PRECURSOR,

(TRIACYLGLYCEROL

LIPASE)] [SP:Q02104]

Contig138G

5351467_f3_390

1796

5922

1356

451

1244

1.10E−126

sp:[LN:YXIQ_BACSU]

[AC:P42308] [GN:YXIQ:N15CR]

[OR:

BACILLUS SUBTILIS

]

[DE:HYPOTHETICAL 45.5 KD

PROTEIN IN BGLS-KATB

INTERGENIC REGION]

[SP:P42308]

Contig138G

5365628_f1_84

1797

5923

933

310

445

5.10E−42

sp:[LN:PERR_ECOLI]

[AC:Q57083] [GN:PERR]

[OR:

ESCHERICHIA COLI

]

[DE:PEROXIDE REStSTANCE

PROTEIN PERR] [SP:Q57083]

Contig138G

558278_c3_804

1798

5924

1680

559

1163

4.20E−118

sp:[LN:BETT_ECOLI]

[AC:P17447] [GN:BETT]

[OR:

ESCHERICHIA COLI

]

[DE:HIGH-AFFINITY CHOLINE

TRANSPORT PROTEIN)

[SP:P17447]

Contig138G

574067_c3_861

1799

5925

372

123

NO-HIT

Contig138G

5898437_f2_295

1800

5926

351

116

NO-HIT

Contig138G

5917762_c3_844

1801

5927

564

187

NO-HIT

Contig138G

601465_c2_630

1802

5928

288

95

NO-HIT

Contig138G

6015652_c3_835

1803

5929

270

89

NO-HIT

Contig138G

6038155_c2_666

1804

5930

327

108

NO-HIT

Contig138G

6097141_f2_309

1805

5931

1293

430

471

9.00E−45

sp:[LN:SBCD_RHOCA]

[AC:O68033] [GN:SBCD]

[OR:

RHODOBACTER

CAPSULATUS

]

[SR:,

RHODOPSEUDOMONAS

CAPSULATA

]

[DE:EXONUCLEASE SBCD

HOMOLOG] [SP:O68033]

Contig138G

6366043_c2_745

1806

5932

189

62

NO-HIT

Contig138G

665900_c2_734

1807

5933

384

127

NO-HIT

Contig138G

6692825_c3_863

1808

5934

279

92

NO-HIT

Contig138G

6728432_c3_884

1809

5935

525

174

183

3.00E−14

sp:[LN:YRAN_ECOLI]

[AC:P45465] [GN:YRAN]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 14.8 KD

PROTEIN IN AGAI-MTR

INTERGENIC REGION (O131)]

[SP:P45465]

Contig138G

6746067_c2_723

1810

5936

192

63

NO-HIT

Contig138G

6812942_f1_19

1811

5937

189

62

NO-HIT

Contig138G

7047291_c1_521

1812

5938

183

60

NO-HIT

Contig138G

7241312_c3_871

1813

5939

531

176

NO-HIT

Contig138G

7244063_c2_746

1814

5940

660

219

NO-HIT

Contig138G

797067_f1_76

1815

5941

246

81

NO-HIT

Contig138G

814027_c2_687

1816

5942

2286

761

1760

6.00E−183

gp:[GI:g2738252]

[LN:SEU97227] [AC:U97227]

[PN:TonB dependent outer

membrane siderophore] [GN:iroN]

[FN:receptor for 4-(3,4-

dihydroxybenzyliden-amino)]

[OR:

Salmonella enterica

]

[DE:Salmonella enterica ferric

entcrochelin esterase homolog

(iroD),IroE (iroE) and TonB

dependent outer membrane

siderophore receptorprotein (iroN)

genes, complete cds.] [NT:IroN]

Contig138G

817083_c3_775

1817

5943

198

65

NO-HIT

Contig138G

832300_f2_220

1818

5944

234

77

NO-HIT

Contig138G

859550_f3_445

1819

5945

246

81

NO-HIT

Contig138G

892308_c1_485

1820

5946

213

70

NO-HIT

Contig138G

899128_c2_724

1821

5947

432

143

93

0.0001

gp:[GI:g3893841] [LN:AF029362]

[AC:AF029362] [OR:

Neisseria

gonorrhoeae

] [DE:

Neisseria

gonorrhoeae

strain FA1090

carbarnoyl-phosphate

synthasesubunit A (carA) and

subunit B (carB) genes, partial

cds.] [NT:similar to

E. coli

ORF,

encoded by GenBank]

Contig138G

954426_c3_786

1822

5948

948

315

509

8.40E−49

pir:[LN:F65002] [AC:F65002]

[PN:hypothetical protein b2304]

[CL:cell division inhibitor yfhF]

[OR:

Escherichia coli

]

Contig138G

957253_f1_103

1823

5949

198

65

NO-HIT

Contig138G

960007_f1_13

1824

5950

1431

476

121

3.10E−11

sp:[LN:INTF_ECOLI]

[AC:P71298] [GN:INTF]

[OR:

ESCHERICHIA COLI

]

[DE:PUTATIVE INTEGRASE

INTF] [SP:P71298]

Contig138G

970157_c2_635

1825

5951

474

157

NO-HIT

Contig138G

9786415_c2_751

1826

5952

588

195

NO-HIT

Contig138G

9813430_f2_154

1827

5953

255

84

NO-HIT

Contig138G

985386_f2_285

1828

5954

669

222

387

7.10E−36

sp:[LN:BETI_ECOLI]

[AC:P17446] [GN:BETI]

[OR:

ESCHERICHIA COLI

]

[DE:REGULATORY PROTEIN

BETI] [SP:P17446]

Contig138G

9876063_f3_356

1829

5955

207

68

NO-HIT

Contig138G

9882180_f2_158

1830

5956

771

256

462

8.10E−44

sp:[LN:YIAD_ECOLI]

[AC:P32664] [GN:YIAD]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 29.8 KD

PROTEIN IN THIC-HEME

INTERGENIC REGION]

[SP:P32664]

Contig138G

9900291_c1_593

1831

5957

110

369

NO-HIT

Contig138G

992342_c3_815

1832

5958

840

279

232

1.90E−19

pir:[LN:A69463] [AC:A69463]

[PN:2-hydroxy-6-oxo-6-

phenylhexa-2,4-dienoic acid

hydrolase (pcbD) homolog]

[OR:

Archaeoglobus fulgidus

]

Contig138G

9940708_f1_12

1833

5959

663

220

151

2.90E−08

gp:[GI:g2246532] [LN:U93872]

[AC:U93872] [OR:Kaposi's

sarcoma-associated herpesvirus]

[SR:Kaposi's sarcoma-associated

herpesvirus - Human herpesvirus

8] [DE:Kaposi's sarcoma-

associated herpesvirus

glycoprotein M, DNAreplication

protein, glycoprotein, DNA

replication protein,

FLlCEinhibitory protein and v-

cyclin genes, complete cds, and

tegumentprotein gene, partial cds.]

[NT:ORF 73, contains large

complex repeat CR 73]

Contig138G

9964688_c3_860

1834

5960

414

137

NO-HIT

Contig138G

9969003_c3_811

1835

5961

1092

363

1502

5.00E−154

gp:[GI:g2271506] [LN:AF009672]

[AC:AF009672] [PN:unknown]

[OR:Acinetobacter sp. ADPI]

[DE:Acinetobacter sp. ADPI

vanillate demethylase region,

vanillatedemethylase (vanB) and

vanillate demethylase (vanA)

genes, completecds.] [NT:similar

to vanillate demethylase (vanA

subunit);] [RE:

Contig139G

14226652_c3_51

1836

5962

225

74

NO-HIT

Contig139G

14478192_f2_5

1837

5963

807

268

546

1.00E−52

sp:[LN:DNAA_SERMA]

[AC:P29440] [GN:DNAA]

[OR:

SERRATIA MARCESCENS

]

[DE:CHROMOSOMAL

REPLICATION INITIATOR

PROTEIN DNAA] [SP:P29440]

Contig139G

19531393_f2_12

1838

5964

384

127

361

4.10E−33

sp:[LN:YADR_HAEIN]

[AC:P45344] [GN:H11723]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

H11723] [SP:P45344]

Contig139G

21673176_c2_34

1839

5965

240

79

114

1.20E−06

pir:[LN:A54517] [AC:A54517]

[PN:variable antigen (clone Ag7)]

[OR:

Plasmodium falciparum

]

Contig139G

23557662_f2_10

1840

5966

1026

341

NO-HIT

Contig139G

244076_f3_18

1841

5967

1236

411

1153

4.80E−117

sp:[LN:SYY_HAEIN]

[AC:P43836] [GN:TYRS:H11610]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:6.1.1.1]

[DE:TYROSYL-TRNA

SYNTHETASE, (TYROSINE--

TRNA LIGASE) (TYRRS)]

[SP:P43836]

Contig139G

25823266_f1_16

1842

5968

606

201

541

3.40E−52

sp:[LN:DNAA_PSEPU]

[AC:P13454] [GN:DNAA]

[OR:

PSEUDOMONAS PUTIDA

]

[DE:CHROMOSOMAL

REPLICATION INITIATOR

PROTEIN DNAA] [SP:P13454]

Contig139G

259777_f1_1

1843

5969

1152

383

883

2.00E−88

sp:[LN:DP3B_PSEPU]

[AC:P13455] [GN:DNAN]

[OR:

PSEUDOMONAS PUTIDA

]

[EC:27.7.7] [DE:DNA

POLYMERASE III, BETA

CHAIN,] [SP:P13455]

Contig139G

30098556_f1_17

1844

5970

1131

376

553

1.80E−53

sp:[LN:RECF_ACTPL]

[AC:P24718] [GN:RECF]

[OR:

ACTINOBACILLUS

PLEUROPNEUMONIAE

]

[SR:,

HAEMOPHILUS

PLEUROPNEUMONIAE

]

[DE:RECF PROTEIN]

[SP:P24718]

Contig139G

33593761_c3_50

1845

5971

1161

386

766

4.90E−76

sp:[LN:Y753_HAEIN]

[AC:P44861] [GN:H10753]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

H10753] [SP:P44861]

Contig139G

3365885_c3_47

1846

5972

237

78

150

1.70E−09

sp:[LN:SSP2_PLAYO]

[AC:Q01443] [GN:SSP2]

[OR:

PLASMODIUM BERGHEI

YOELII

] [DE:SPOROZOITE

SURFACE PROTEIN 2

PRECURSOR] [SP:Q01443]

Contig139G

3907827_c2_38

1847

5973

558

185

448

2.50E−42

sp:[LN:DEDA_ECOLI]

[AC:P09548] [GN:DEDA]

[OR:

ESCHERICHIA COLI

]

[DE:DEDA PROTEIN (DSG-1

PROTEIN)] [SP:P09548]

Contig139G

4414193_f1_2

1848

5974

2478

825

2750

2.80E−286

sp:[LN:GYRB_ECOLI]

[AC:P06982:O08438]

[GN:GYRB:PAPA:NALC:ACRB:

PCBA:HIMB:HISU]

[OR:

ESCHERICHIA COLI

]

[EC:5.99.1.3] [DE:DNA GYRASE

SUBUNIT B.]

[SP:P06982:O08438]

Contig139G

5081262_f1_3

1849

5975

1053

350

NO-HIT

Contit139G

5120288_c1_28

1850

5976

1938

645

1704

2.00E−175

sp:[LN:YHES_ECOLI]

[AC:P45535] [GN:YHES]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL ABC

TRANSPORTER ATP-BINDING

PROTEIN YHES] [SP:P45535]

Contig139G

5276693_f2_6

1851

5977

402

133

195

1.60E−15

sp:[LN:C562_ECOLI]

[AC:P00192:P76805] [GN:CYBC]

[OR:

ESCHERICHIA COLI

]

[DE:SOLUBLE CYTOCHROME

B562 PRECURSOR]

[SP:P00192:P76805]

Contig139G

5944050_f2_11

1853

5978

1071

356

NO-HIT

Contig139G

6042803_c1_23

1853

5979

855

284

360

5.20E−33

pir:[LN:F69801] [AC:F69801]

[PN:epoxide hydrolase homolog

yfiM] [GN:yfhM] [OR:

Bacillus

subtilis

]

Contig139G

7128917_f3_19

1854

5980

183

60

NO-HIT

Contig140G

11892931_c3_103

1855

5981

702

233

896

8.20E−90

sp:[LN:RPE_ECOLI]

[AC:P32661] [GN:RPE:DOD]

[OR:

ESCHERICHIA COLI

]

[EC:5.1.3.1] [DE:EPIMERASE)

(PPE) (RSP3E)] [SP:P32661]

Contig140G

12603382_f1_14

1856

5982

1392

463

637

2.30E−62

sp:[LN:PABB_ECOLI]

[AC:P05041] [GN:PABB]

[OR:

ESCHERICHIA COLI

]

[EC:4.1.3.—] [DE:PARA-

AMINOBENZOATE SYNTHASE

COMPONENT I, (ADC

SYNTHASE)] [SP:P05041]

Contig140G

1361583_c1_62

1857

5983

696

231

468

1.90E−44

sp:[LN:HISI_BACSU]

[AC:034520] [GN:HISG]

[OR:

BACILLUS SUBTILIS

]

[EC:2.4.2.17] [DE:ATP

PHOSPHORIBOSYLTRANSFER

ASE,] [SP:034520]

Contig140G

1443927_c1_72

1858

5984

681

226

343

3.30E−31

sp:[LN:YEAZ_ECOLI]

[AC:P76256:O08476:O08477]

[GN:YEAZ] [OR:

ESCHERICHIA

COLI

] [DE:HYPOTHETICAL

25.2 KD PROTEIN IN FADD-

PABB INTERGENIC REGION]

[SP:P76256:O08476:O08477]

Contig140G

19800062_f1_9

1859

5985

591

196

425

6.70E−40

gp:[GI:g1871177]

[LN:ATU90439] [AC:U90439]

[GN:T06D20.4] [OR:

Arabidopsis

thaliana

] [SR:thale cress]

[DE:

Arabidopsis thaliana

chromosome II BAC T06D20

genomic sequence,complete

sequence.] [NT:unknown protein]

Contig140G

20744002_c2_85

1860

5986

534

177

481

7.80E−46

sp:[LN:FBP_PSEAE]

[AC:P40882] [GN:FBP]

[OR:

PSEUDOMONAS

AERUGINOSA

]

[DE:FERRIPYOCHELIN

BINDING PROTEIN]

[SP:P40882]

Contig140G

22689193_c3_97

1861

5987

1677

558

80

9.30E−05

pir:[LN:H70355] [AC:H70355]

[PN:hypothetical protein aq_627]

[GN:aq_627] [OR:

Aquifex

acolicus

]

Contig140G

23703138_c2_88

1862

5988

849

282

581

2.00E−56

pir:[LN:F64819] [AC:F64819]

[PN:hypothetical protein b0822]

[OR:

Escherichia coli

]

Contig140G

23853200_c2_90

1863

5989

837

278

223

1.80E−18

pir:[LN:B36868] [AC:B36868]

[PN:copB

homolog:hypotheticalprotein 2]

[OR:

Xanthomonas campestris

]

Contig140G

24407827_c3_99

1864

5990

1926

641

NO-HIT

Contig140G

24431540_c3_102

1865

5991

843

280

294

5.10E−26

sp:[LN:YHIQ_NEIGO]

[AC:P72077] [OR:

NEISSERIA

GONORRHOEAE

]

[DE:HYPOTHETICAL 27.3 KD

PROTEIN] [SP:P72077]

Contig140G

24662562_c2_91

1866

5992

336

111

301

9.30E−27

sp:[LN:SUGE_CITFR]

[AC:O69279] [GN:SUGE]

[OR:

CITROBACTER FREUNDII

]

[DE:SUGE PROTEIN

HOMOLOG] [SP:O69279]

Contig140G

258442_c1_76

1867

5993

1056

352

1240

2.90E−126

sp:[LN:NADA_ECOLI]

[AC:P11458:P77373]

[GN:NADA:NICA]

[OR:

ESCHERICHIA COLI

]

[DE:QUINOLINATE

SYNTHETASE A]

[SP:P11458:P77373]

Contig140G

26259753_c2_79

1868

5994

273

90

373

2.20E−34

sp:[LN:YRPM_ACICA]

[AC:P33989]

[OR:

ACINETOBACTER

CALCOACETICUS

]

[DE:HYPOTHETICAL 9.2 KD

PROTEIN IN RPON-MURA

INTERGENIC REGION (ORF3)]

[SP:P33989]

Contig140G

26350790_c1_63

1869

5995

1353

450

1024

2.20E−103

pir:[LN:E70368] [AC:E70368]

[PN:histidinol dehydrogenase]

[GN:hisD] [CL:histidinol

dehydrogenase:histidinol

dehydrogenase homology]

[OR:

Aquifex aeolicus

]

Contig140G

26579061_c2_93

1870

5996

1242

413

1013

3.30E−102

sp:[LN:ARGJ_NEIGO]

[AC:P38434] [GN:ARGJ]

[OR:

NEISSERIA

GONORRHOEAE

]

[EC:2.3.1.35:2.3.1.1]

[DE:ACETYLTRANSFERASE,

(N-ACETYLGLUTAMATE

SYNTHASE)(AGS)] [SP:P38434]

Contig140G

26600052_c2_80

1871

5997

1263

420

1928

3.60E−199

sp:[LN:MURA_ACICA]

[AC:P33986] [GN:MURA:MURZ]

[OR:

ACINETOBACTER

CALCOACETICUS

] [EC:2.5.1.7]

[DE:TRANSFERASE)(EPT)]

[SP:P33986]

Contig140G

2853452_c3_104

1872

5998

399

132

NO-HIT

Contig140G

29485012_c3_106

1873

5999

1032

343

174

8.50E−13

gp:[GI:e258655:g1628369]

[LN:DNINTREG] [AC:X98546]

[GN:gepB] [OR:

Dichelobacter

nodosus

] [DE:

D.nodosus

intB,

regA, gepA, gepB, and gepC

genes.]

Contig140G

30704408_c1_75

1874

6000

573

190

356

1.40E−32

gp:[GI:e1370607:g4158208]

[LN:SC9B5] [AC:AL035206]

[PN:putative methylated-DNA-

protein-cysteine] [GN:SC9B5.29]

[OR:

Streptomyces coelicolor

]

[DE:

Streptomyces coelicolor

]

cosmid 9B5.] [NT:SC9B5.29,

ogt2, methylated-DNA-protein-

cysteine]

Contig140G

31822052_c3_98

1875

6001

192

63

112

9.90E−07

pir:[LN:S66936]

[AC:S66936:S662927]

[PN:probable membrane protein

YOR053w:hypothetical protein

O2799] [OR:

Saccharomyces

cerevisiae

] [MP:15R]

Contig140G

33618802_c2_87

1876

6002

882

293

725

1.10E−71

sp:[LN:ESTD_HUMAN]

[AC:P1O768] [GN:ESD]

[OR:

HOMO SAPIENS

]

[EC:3.1.1.1] [DE:ESTERASE D,]

[SP:P 0768]

Contig140G

35267331_c1_74

1877

6003

2016

671

1238

4.70E−126

pir:[LN:A36868] [AC:A36868]

[PN:copA homolog:hypothetical

protein 1] [CL:laccase]

[OR:

Xanthomonas campestris

]

Contig140G

35781253_f1_10

1878

6004

261

86

119

1.80E−07

pir:[LN:S56703] [AC:S56703]

[PN:glycine-rich cell wall protein

precursor:CEM6 protein]

[OR:

Daucus carota

] [SR:, carrot]

Contig140G

35948293_c3_95

1879

6005

867

288

128

6.80E−08

pir:[LN:H69061] [AC:H69061]

[PN:ABC transporter related

protein] [GN:MTH1463]

[OR:

Methanobacterium

thermoautotrophicum

]

Contig140G

36331452_c1_65

1880

6006

909

302

145

9.00E−07

pir:[LN:A56143] [AC:A56143]

[PN:surface-array protein homolog

sapA2] [GN:sapA2]

[OR:

Campylobacter fetus

]

Contig140G

3906412 c1_73

1881

6007

1461

486

NO-HIT

Contig140G

4026513_c1_64

1882

6008

1095

364

1000

7.90E−101

sp:[LN:H158_ACEXY]

[AC:P45358] [GN:HISC:HISI]

[OR:

ACETOBACTER

XYLINUM

]

[SR:

ACETOBACTER

PASTEURIANUS

] [EC:2.6.1.9]

[DE:PHOSPHATE

TRANSAMINASE)] [SP:P45358]

Contig140G

4189078_c1_71

1883

6009

627

208

281

1.20E−24

sp:[LN:YEAB_ECOLI]

[AC:P43337] [GN:YEAB]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 21.4 KD

PROTEIN IN PABB-SDAA

INTERGENIC REGION]

[SP:P43337]

Contig140G

4728188_f3_46

1884

6010

282

93

NO-HIT

Contig140G

5884375_c2_77

1885

6011

1479

492

1926

5.90E−199

sp:[LN:RP54_ACICA]

[AC:P33983] [GN:RPON:NTRA]

[OR:

ACINETOBACTER

CALCOACETICUS

] [DE:RNA

POLYMERASE SIGMA-54

FACTOR] [SP:P33983]

Contig140G

7070412_c2_84

1886

6012

1356

451

202

1.50E−15

gp:[GI:g2293509] [LN:AF010463]

[AC:AF010463] [PN:merozoite

surface protein 2] [GN:MSP2]

[OR:

Plasmodium falciparum

]

[SR:malaria parasite]

[DE:

Plasmodium falciparum

merozoite surface protein 2

(MSP2) gene,partial cds.] [RE:

Contig140G

7226531_c2_78

1887

6013

363

120

439

2.20E−41

sp:[LN:RP5M_ACICA]

[AC:P33987]

[OR:

ACINETOBACTER

CALCOACETICUS

]

[DE:PROBABLE SIGMA(54)

MODULATION PROTEIN

(ORF2)] [SP:P33987]

Contig140G

7267177_c3_96

1888

6014

1227

408

NO-HIT

Contig143G

10394625_c2_717

1889

6015

198

65

NO-HIT

Contig143G

1041660_c2_669

1890

6016

1722

573

2102

1.30E−217

sp:[LN:YJJK_HAEIN]

[AC:P45127] [GN:H11252]

[OR:

HAEMOPHILUS

INFLUENZAE

] [DE:ABC

TRANSPORTER ATP-BINDING

PROTEIN H11252] [SP:P45127]

Contig143G

1053427_c1_590

1891

6017

1941

646

768

9.70E−90

sp:[LN:DEAD_KLEPN]

[AC:P33906] [GN:DEAD]

[OR:

KLEBSIELLA

PNEUMONIAE

] [DE:ATP-

DEPENDENT RNA HELICASE

DEAD] [SP:P33906]

Contig143G

10553775_f1_156

1892

6018

2199

732

793

6.80E−79

gp:[GI:g2981048] [LN:AF051691]

[AC:AF051691] [PN:hydroxamate

type ferrisiderophore receptor]

[GN:fiuA] [OR:

Pseudomonas

aeruginosa

] [DE:

Pseudomonas

aeruginosa

stress factor A (psfA),

ECF sigma factor(fiuI),

transmembrane sensor (fiuR), and

hydroxamate-typeferrisiderophore

receptor (fiuA) genes, complete

cds.] [NT:FiuA]

Contig143G

10554510_f1_63

1893

6019

231

76

152

5.70E−11

gp:[GI:g4378826] [LN:AF121138]

[AC:AF121138]

[PN:bacterioferritin-associated

ferredoxin] [GN:bfd]

[OR:

Azotobacter vinelandii

]

[DE:

Azotobacter vinelandii

putative RNase T (rnt) gene, partial

cds;bacterioferritin-associated

ferredoxin (bfd) gene, complete

cds;and bacterioferritin (bfr) gene,

partial cds.] [NT:Bfd]

Contig143G

10663290_c3_805

1894

6020

1452

483

800

1.20E−79

sp:[LN:MURF_HAEIN]

[AC:P45061] [GN:MURF:H11134]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:6.3.2.15]

[DE:(D-ALANYL-D-ALANINE-

ADDING ENZYME)]

[SP:P45061]

Contig143G

1071011_c3_757

1895

6021

1980

659

1389

4.70E−142

sp:[LN:BETT_ECOLI]

[AC:P17447] [GN:BETT]

[OR:

ESCHERICHIA COLI

]

[DE:HIGH-AFFINITY CHOLINE

TRANSPORT PROTEIN]

[SP:P17447]

Contig143G

10719827_c1_554

1896

6022

1002

333

NO-HIT

Contig143G

10722077_c3_827

1897

6023

1407

468

700

4.80E−69

sp:[LN:AIP2_YEAST]

[AC:P46681]

[GN:AIP2:YDL178W]

[OR:

SACCHAROMYCES

CEREVISIAE

] [SR:,BAKER'S

YEAST] [DE:ACTIN

INTERACTING PROTEIN 2]

[SP:P46681]

Contig143G

10804687_f1_126

1898

6024

744

247

248

3.80E−21

gp:[GI:e1215185:g2687328]

[LN:SC4H8] [AC:AL020958]

[PN:hypothetical protein

SC4H8.02] [GN:SC4H8.02]

[OR:

Streptomyces coelicolor

]

[DE:

Streptomyces coelicolor

cosmid 4H8] [NT:SC4H8.02,

possible membrane protein, len:

256]

Contig143G

10954807_c1_521

1899

6025

645

214

176

1.60E−13

gp:[GI:d1032489:g3298508]

[LN:AB015670] [AC:AB015670]

[OR:Bacillus sp] [SR:Bacillus sp.

DNA] [DE:Bacillus sp. genes for

CDase, CGTase, MBP and 15

ORFs, partial andcomplete cds.]

[NT:A2-5a orf2; hypothetical

protein]

Contig143G

11017941_c1_592

1900

6026

789

262

801

960E−80

gp:[GI:g4336799] [LN:AF106002]

[AC:AF106002] [PN:toluene

tolerance protein Ttg2B]

[GN:ttg2B] [OR:

Pseudomonas

putida

] [DE:

Pseudomonas putida

strain GM73 toluene tolerance

protein Ttg2A(ttg2A), toluene

tolerance protein Ttg2B (ttg2B),

toluene toleranceprotein Ttg2C

(ttg2c), toluene tolerance protein

Ttg2D (ttg2D),toluene tolerance

protein Ttg2E (ttg2E); toluene

tolerance proteinTtg2F (ttg2F), and

UDP-N-acetylglucosamine

enolpynuvyl transferasehomolog

(ttg2G) genes, complete cds.]

[NT:hypothetical protein; six-pass

transmembrane]

Contig143G

11209542_c2_649

1901

6027

870

289

158

2.70E−09

pir:[LN:S18533]

[AC:S18533:S16747] [PN:eryG

protein] [GN:eryG] [CL:bioC

homology]

[OR:

Saccharopolyspora erythraea

]

Contig143G

1172192_f3_373

1902

6028

1131

376

385

1.20E−35

pir:[LN:A70365] [AC:A70365]

[PN:conserved hypothetical

protein aq_740] [GN:aq_740]

[OR:

Aquifex aeolicus

]

Contig143G

11767501_c3_823

1903

6029

924

307

692

3.40E−68

sp:[LN:TRUB_ECOLI]

[AC:P09171:P76671]

[GN:TRUB:P35]

[OR:

ESCHERICHIA COLI

]

[EC:4.2.1.70]

[DE:HYDROLYASE) (P35

PROTEIN)] [SP:P09171:P76671]

Contig143G

11839177_f1_59

1904

6030

207

68

ND-HIT

Contig143G

11990925_f3_460

1905

6031

780

259

464

4.90E−44

gp:[GI:g2582421] [LN:AF026067]

[AC:AF026067] [PN:putative

reductase] [GN:slfA]

[OR:

Pseudomonas aeruginosa

]

[DE:

Pseudomonas aeruginosa

putative reductase (slfA),

putativeFMNH2-dependent

monooxygenase (slfB), and

putative FMNH2-

dependentmonooxygenase (slfC)

genes, complete cds.]

Contig143G

1210927_c1_485

1906

6032

372

123

654

3.60E−64

sp:[LN:FERX_ACICA]

[AC:P3 1004]

[OR:

ACTNETOBACTER

CALCOACETICUS

]

[DE:PUTATIVE FERREDOXIN)

[SP:P31004]

Contig143G

12T20392_f2_195

1907

6033

855

284

148

7.50E−08

sp:[LN:Y401_LAMBD]

[AC:P03764]

[OR:

BACTERTOPHAGE

LAMBDA

]

[DE:HYPOTHETTCAL PROTETN

ORF401] [SP:P03764]

Contig143G

1214012_f1_148

1908

6034

582

193

115

5.30E−07

sp:[LN:YHAT_ECOLI]

[AC:P42622] [GN:YHAI]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 13.5 KD

PROTEIN TN EXUR-TDCC

INTERGENIC REGION]

[SP:P42622]

Contig143G

12619031_c2_693

1909

6035

552

183

378

6.40E−35

sp:[LN:RIMM_HAEIN]

[AC:P44568] [GN:RIMM:H10203]

[OR:

HAEMOPHILUS

INFLUENZAE

] [DE:16S RRNA

PROCESSING PROTEIN RIMM]

[SP:P44568]

Contig143G

13063202_c3_765

1910

6036

549

182

180

6.10E−14

gp:[GI:d1032534:g3318590]

[LN:AB015670] [AC:AB015670]

[OR:Bacillus sp.] [SR:Bacillus sp.

DNA] [DE:Bacillus sp. genes for

CDase, CGTase, MBP and 15

ORFs, partial andcomplete cds.]

[NT:A2-5a orf21; hypothetical

protein]

Contig143G

1306502_c3_741

1911

6037

2721

906

2895

1.20E−301

gp:[GI:e1154132:g2564217]

[LN:AZPDHE] [AC:Y15124]

[PN:pyruvate dehydrogenase

(lipoamide)] [GN:pdhE]

[OR:

Azotobacter vinelandii

]

[EC:1.2.4.1] [DE:

Azotobacter

vinelandii

pdhE gene.]

Contig143G

134412_c1_604

1912

6038

789

262

428

3.20E−40

pir:[LN:S75988] [AC:S75988]

[PN:hypothetical protein]

[OR:Synechocystis sp.] [SR:PCC

6803, PCC 6803] [SR:P,CC 6803,]

Contig143G

1353436_c1_488

1913

6039

702

233

514

2.50E−49

sp:[LN:PDXH_SYNY3]

[AC:P74211]

[GN:PDXH SLL1440]

[OR.SYNECHOCYSTIS SP]

[SR:PCC 6803,] [EC:1.4.3.5]

[DE:PYRIDOXAMINE 5,-

PHOSPHATE OXIDASE,

(PNP/PMP OXIDASE)]

[SP:P74211]

Contig143G

13673177_c1_523

1914

6040

210

69

NO-HIT

Contig143G

13722252_c3_831

1915

6041

1455

484

1323

4.70E−135

sp:[LN:YKFD_ECOLI]

[AC:Q47689] [GN:YKFD]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 51.5 KD

TRANSPORT PROTEIN IN

PERR-ARGF INTERGENIC

REGION] [SP:Q47689]

Contig143G

13726015_c3_804

1916

6042

960

319

773

8.90E−77

sp:[LN:YABC_HAEIN]

[AC:P45057] [GN:H11130]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

H11130] [SP:P45057]

Contig143G

13923141_c2_739

1917

6043

645

214

668

1.20E−65

sp:[LN:RL4_HAEIN]

[AC:P44345]

[GN:RPLD:RPL4:H10778]

[OR:

HAEMOPHILUS

INFLUENZAE

] [DE:505

RIBOSOMAL PROTEIN L4]

[SP:P44345]

Contig143G

14062961_c1_579

1918

6044

1230

409

894

1.30E−89

gp:[Gi:g3860032] [LN:AF090987]

[AC:AF090987] [PN:drug efflux

protein TetA] [GN:tetA] [FN:drug

resistance pump]

[OR:

Agrobacterium tumefaciens

]

[DE:

Agrobacterium tumefaciens

transcriptional repressor TetR

(tctR) anddrug efflux protein TetA

(tetA) genes, complete cds.]

Contig143G

14348262_c2_691

1919

6045

3888

1295

335

6.40E−61

gp:[GI:g2598966] [LN:AF027189]

[AC:AF027189] [PN:ComC]

[GN:comC] [OR:

Acinetobacter

calcoaceticus

] [DE:

Acinetobacter

calcoaceticus

ComC (comC) gene.

complete cds.] [NT:similar to type

IV-pili assembly factors]

Contig143G

14453552_c1_552

1920

6046

1011

336

1065

1.00E−107

sp:[LN:LYTB_ECOLI]

[AC:P22565] [GN:LYTB]

[OR:

ESCHERTCHIA COLI

]

[DE:LYTB PROTEIN]

[SP:P22565]

Contig143G

14508377_f3_375

1921

6047

603

200

824

3.50E−82

sp:[LN:MDAB_ECOLI]

[AC:P40717]

[GN:MDAB:MDA66]

[OR:

ESCHERICHIA COLI

]

[DE:MODULATOR OF DRUG

ACTIVITY B] [SP:P40717]

Contig143G

14569068_c3_809

1922

6048

2220

739

603

1.30E−129

gp:[GI:g459551]

[LN:PSEFIMBA] [AC:L13865]

[PN:fimbrial assembly protein]

[GN:pilQ] [OR:

Pseudomonas

aeruginosa

] [SR:

Pseudomonas

aeruginosa

(strain PAOI) DNA]

[DE:

Pseudomonas aeruginosa

pilQ

gene, complete cds, and

shikimatekinase (aroK) gene,

partial cds.] [NT:translation may

start with ATG at position 175-

177]

Contig143G

14587800_c2_677

1923

6049

645

214

339

8.70E−31

pir:[LN:S77727] [AC:S77727]

[PN:fimbrial assembly protein

pilN] [GN:pilN]

[OR:

Pseudomonas aeruginosa

]

Contig143G

1459751_f1_45

1924

6050

642

213

446

4.00E−42

gp:[GI:e243218:g1890173]

[LN:ECSODC] [AC:X97766]

[PN:superoxide dismutase]

[GN:sodC] [OR:

Escherichia coli

]

[EC:1.15.1.1] [DE:

E.coli

sodC

gene for Cu,Zn superoxide

dismutase.] [SP:P53635]

Contig143G

14734582_c2_674

1925

6051

357

118

NO-HIT

Contig143G

14745912_f3_388

1926

6052

732

243

553

1.80E−53

sp:[LN:KGUA_ECOLI]

[AC:P24234] [GN:GMK:SPOR]

[OR:

ESCHERICRIA COLI

]

[EC:2.7.4.8] [DE:GUANYLATE

KINASE, (GMP KINASE)]

[SP:P24234]

Contig143G

14879843_f1_13

1927

6053

2055

684

1838

1.20E−189

sp:[LN:RECG_ECOLI]

[AC:P24230:P76721] [GN:RECG]

[OR:

ESCHERICHIA COLI

]

[EC:3.6.1.—] [DE:ATP-

DEPENDENT DNA HELICASE

RECG,] [SP:P24230:P76721]

Contig143G

14881381_f1_423

1928

6054

624

207

446

4.00E−42

pir:[LN:S76614] [AC:S76614]

[PN:hypothetical protein]

[CL:amidotransferase hisH]

[OR:Synechocystis sp.] [SR:PCC

6803, , PCC 6803] [SR:PCC 6803,]

Contig143G

14892287_c2_735

1929

6055

1326

441

709

5.40E−70

pir:[LN:B70415] [AC:B70415]

[PN:proton/sodium-glutamate

symport protein] [GN:gltP]

[OR:

Aquifex aeolicus

]

Contig143G

14895300_c2_675

1930

6056

831

276

496

2.00E−47

sp:[LN:RRMA_ECOLI]

[AC:P36999] [GN:RRMA]

[OR:

ESCHERICHIA COLI

]

[EC:2.1.1.51

[DE:METHYLTRANSFERASE)]

[SP:P36999]

Contig143G

14898437_c1_500

1931

6057

375

124

201

3.70E−16

gp:[GI:g3128275] [LN:AF010496]

[AC:AF010496] [PN:hypothetical

protein] [OR:

Rhodobacter

capsulatus

] [DE:

Rhodobacter

capsulatus

strain SB1003, partial

genome.]

Contig143G

14956561_f3_431

1932

6058

1035

344

291

1.10E−25

gp:[GI:g1657970]

[LN:PAU73506] [AC:U73506]

[PN:OruR] [GN:oruR]

[OR:

Pseudormonas aeruginosa

]

[DE:

Pseudormonas aeruginosa

ornithine utilization regulatory

(oruR)gene, complete cds.]

[NT:regulatory locus for ornithine

utilization]

Contig143G

156951_f1_131

1933

6059

702

233

303

5.70E−27

pir:[LN:G64680] [AC:G64680]

[PN:transcription regulator]

[OR:

Helicobacter pylori

]

Contig143G

15875200_c1_535

1934

6060

435

144

NO-HIT

Contig143G

16039128_f1_20

1935

6061

237

78

139

6.70E−08

gp:[GI:g4063042] [LN:AF068065]

[AC:AF068065] [PN:GP900]

[OR:

Cryptosporidium parvum

]

[DE:

Cryptosporidium parvum

GP900 gene, complete cds.]

]NT:mucin-like glycoprotein]

Contig143G

16039633_f1_417

1936

6062

1320

439

1162

5.40E−118

gp:[GI:e293806:g1835113]

[LN:LMMETYX] [AC:Y10744]

[PN:O-acetylhomoserine

sulfhydrylase] [GN:metY]

[FN:involved in the

transsulfuration pathway]

[OR:

Leptospira meyeri

]

[DE:

L.meyeri

metY and metX

genes.]

Contig143G

160807_f1_49

1937

6063

351

116

351

4.10E−33

sp:[LN:YGIN_ECOLI]

[AC:P40718] [GN:YGIN]

[OR:

ESCHERICHIA COLI

]

[DE:11.5 KD PROTEIN IN PARC-

PARE INTERGENIC REGION]

[SP:P40718]

Contig143G

16180387_c2_724

1938

6064

897

298

593

1.10E−57

sp:[N SUHB_HAEIN]

[AC:P44333] [GN:SUHB:H10937]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:EXTRAGENIC

SUPPRESSOR PROTEIN SUHB

HOMOLOG] [SP:P44333]

Contig143G

16456576_c2_619

1939

6065

1056

351

1294

5.50E−132

sp:[LN:RF2_SALTY]

[AC:P28353] [GN:PRFB]

[OR:

SALMONELLA

TYPHIMURIUM

] [DE:PEPTIDE

CHAIN RELEASE FACTOR 2

(RF-2)] [SP:P28353]

Contig143G

16820937_f3_358

1940

6066

249

82

104

7.00E−06

sp:[LN:SYGB_NEIGO]

[AC:Q50945] [GN:GLYS]

[OR:

NEISSERIA

GONORRHOEAE

] [EC:6.1.1.14]

[DE:BETA CHAIN) (GLYRS)

(FRAGMENT)] [SP:Q50945]

Contig143G

17000051_c1_493

1941

6067

1311

436

2227

7.50E−231

gp:[GI:e322235:g2765829]

[LN:ABWAAA153] [AC:Z96925]

[PN:3-deoxy-D-manno-2-

octulosonate transferase] [GN:A]

[FN:Kdo transfer in

lipopolysaccharides]

[OR:

Acinetobacter baumannii

]

[DE:

Acinetobacter baumannii

A

gene, strain ATCC 15308.]

[NT: formerly named kdtA]

Contig143G

19533537_c2_731

1942

6068

597

198

453

7.20E−43

pir:[LN:D70033] [AC:D70033]

[PN:conserved hypothetical

protein yvdD] [GN:yvdD]

[CL:yeast conserved hypothetical

protein YJL055w] [OR:

Bacillus

subtilis

]

Contig143G

19557656_f1_137

1943

6069

918

305

NO-HIT

Contig143G

19625913_c2_740

1944

6070

291

96

303

5.70E−27

pir:[LN:E64093] [AC:E64093]

[PN:ribosomal protein 517]

[CL:

Escherichia coli

ribosomal

protein 517] [OR:

Haemophilus

influenzae

]

Contig143G

19643768_f1_144

1945

6071

3519

1172

512

5.80E−48

gp:[GI:e1245842:g2808665]

[LN:PDAJ346O] [AC:AJ223460]

[GN:flhS] [OR:

Paracoccus

denitrificans

] [DE:

Paracoccus

denitrificans

flhS, flhR, abcA,

abcB, abcC, pqqE genesand orf's.]

Contig143G

196892_f1_114

1946

6072

954

317

156

5.70E−09

gp:[GI:g1103915]

[LN:RLU40388] [AC:U40388]

[PN:PobR] [GN:pobR]

[OR:

Rhizobium leguminosarum

]

[SR:

Rhizobium leguminosarum

strain=B155] [DE:

Rhizobium

leguminosarum

positive regulator

of pobA (pobR) gene,complete

cds, and 4-hydroxybenzoate

hydroxylase (pobA) gene,partial

cds.] [NT:positive regulator for

pobA, the structural gene]

Contig143G

19725260_f3_420

1947

6073

798

265

841

5.50E−84

sp:[LN:OMPR_ECOLI]

[AC:P03025]

[GN:OMPR:OMPB:KMT]

[OR:

ESCHERICHIA COLI

]

[DE:TRANSCRIPTIONAL

REGULATORY PROTEIN

OMPR] [SP:P03025]

Contig143G

19742803_c2_730

1948

6074

672

223

287

2.80E−25

gp:[GI:g4336801] [LN:AF106002]

[AC:AF106002] [PN:toluene

tolerance protein Ttg2D]

[GN:ttg2D] [OR:

Pseudomonas

putida

] [DE:

Pseudomonas putida

strain GM73 toluene tolerance

protein Ttg2A(ttg2A), toluene

tolerance protein Ttg2B (ttg2B),

toluene toleranceprotein Ttg2C

(ttg2C), toluene tolerance protein

Ttg2D (ttg2D),toluene tolerance

protein Ttg2E (ttg2E) toluene

tolerance protein Ttg2F (ttg2F), and

UDP-N-acetylglucosamine

enolpyruvyl transferasehomolog

(ttg2G) genes, complete cds.]

[NT:hypothetical protein]

Contig143G

19803187_f1_105

1949

6075

195

64

NO-HIT

Contig143G

19806508_c3_746

1950

6076

1341

446

1273

9.20E−130

sp:[LN:MRSA_ECOLI]

[AC:P31120] [GN:MRSA]

[OR:

ESCHERICHIA COLI

]

[DE:MRSA PROTEIN]

[SP:P31120]

Contig143G

19941438_f1_28

1951

6077

534

177

NO-HIT

Contig143G

20447802_c1_581

1952

6078

1128

375

501

5.90E−48

gp:[GI:e246538:g1684732]

[LN:PSDNGC] [AC:Z73914]

[PN:ORF378 protein] [GN:orf378]

[FN:A membrane-bound protein]

[OR:

Pseudomonas stutzeri

]

[DE:

Pseudomonas stutzeri

orf175

gene.]

Contig143G

20509687_f1_115

1953

6079

1005

334

753

1.20E−74

gp:[GI:g2462762]

[LN:AC002292] [AC:AC002292]

[GN:F8A5.21] [OR:

Arabidopsis

thaliana

] [SR:thale cress]

[DE:Genomic sequence of

Arabidopsis BAC F8A5, complete

sequence.] [NT:Highly similar to

auxin-induced protein (aldo/keto]

Contig143G

2072215_c3_828

1954

6080

186

61

NO-HIT

Contig143G

214417_c3_825

1955

6081

240

79

NO-HIT

Contig143G

21485002_c2_729

1956

6082

945

314

862

314

3.30E−86

sp:[LN:YRBF_HAEIN]

[AC:P45031] [GN:H11087]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL ABC

TRANSPORTER ATP-BINDING

PROTEIN H11087] [SP:P45031]

Contig143G

21541067_c1_593

1957

6083

291

96

NO-HIT

Contig143G

21562641_f2_252

1958

6084

1449

482

1368

7.90E−140

sp:[LN:YKFD_ECOLI]

[AC:Q47689] [GN:YKFD]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 51.5 KD

TRANSPORT PROTEIN IN

PERR-ARGF INTERGENIC

REGION] [SP:Q47689]

Contig143G

21603201_c2_640

1959

6085

231

76

NO-HIT

Contig143G

21619062_f1_445

1960

6086

630

209

930

2.10E−93

sp:[LN:YCAC_ECOLI]

[AC:P21367] [GN:YCAC]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 23.1 KD

PROTEIN IN DMSC-PFLA

INTERGENIC REGION]

[SP:P21367]

Contig143G

21640955_c3_774

1961

6087

594

197

429

2.50E−40

sp:[LN:GS14_BACSU]

[AC:P80871] [GN:YWRO]

[OR:

BACILLUS SUBTILIS

]

[EC:16.99.—] [DE:GENERAL

STRESS PROTEIN 14 (GSPI4),]

[SP:P80871]

Contig143G

21718785_f2_224

1962

6088

444

147

441

1.40E−41

pir:[LN:B44514] [AC:B44514]

[PN:hypothetical protein I (vnfA

5′ region)] [CL:hypothetical

protein HI0719] (OR:

Azotobacter

vinelandii

]

Contig143G

21742177_f1_82

1963

6089

1575

524

1293

7.00E−132

sp:[LN:SYERHIME]

[AC:P151891 [GN:GLTX]

[OR:

RHIZOBIUM MELILOTI

]

[EC:6.1.1.17] [DE:(GLURS)]

[SP:P15189]

Contig143G

22142137_c1_495

1964

6090

2001

666

2272

1.30E−235

sp:[LN:ACSA_ECOLI]

[AC:P27550] [GN:ACS]

[OR:

ESCHERICHIA COLI

]

[EC:6.2.1.1] [DE:ACTIVATING

ENZYME)] [SP:P27550]

Contig143G

2225292_c2_695

1965

6091

522

173

389

4.40E−36

sp:[LN:PL19_ECOLI]

[AC:P02420] [GN:RPLS]

[OR:

ESCHERICHIA COLI

]

[DE:50S RIBOSOMAL PROTEIN

L19] [SP:P02420]

Contig143G

2228212_c3_771

1966

6092

438

145

NO-HIT

Contig143G

22282753_c2_612

1967

6093

198

65

NO-HIT

Contig143G

22284462_c3_781

1968

6094

1032

343

275

5.30E−24

gp:[GI:g3089616] [LN:AF086791]

[AC:AF086791:AF030862:AF030

863:AF034614:AF034615:AF060

218] [PN:homoserine kinase

homolog] [OR:

Zymomonas

mobitis

] [DE:

Zymomonas mobitis

strain ZM4 clone 67E10

carbarnoylphosphatesynthetase

small subunit (carA),

carbamoylphosphate

synthetaselarge subunit (carB),

transcription elongation factor

(greA),enolase (eno), pyruvate

dehydrogenase alpha subunit

(pdhA),pyruvate dehydrogenase

beta subunit (pdhB), ribonuclease

H (rnh),homoserine kinase

homolog, alcohol dehydrogenase II

(adhB), andexcinuclease ABC

subunit A (uvrA) genes, complete

cds; and unknowngenes.]

[NT:ORF5]

Contig143G

2235332_c3_760

1969

6095

636

211

379

5.00E−35

pir:[LN:C64922] [AC:C64922]

[PN:conserved hypothetical

protein b1649] [OR:

Escherichia

coli

]

Contig143G

22470468_f2_250

1970

6096

315

104

NO-HIT

Contig143G

22540825_c2_702

1971

6097

1272

423

795

4.20E−79

sp:[LN:MDFA_ECOLI]

[AC:Q46966:P71226:P75807]

[GN:CMR:MDFA]

[OR:

ESCHERICHIA COLI

]

[DE:MULTIDRUG

TRANSLOCASE MDFA

(CHLORAMPHENICOL

RESISTANCE PUMP CMR)]

[SP:Q46966:P71226:P75807]

Contig143G

22665905_c1_608

1972

6098

417

138

538

7.10E−52

sp:[LN:RL16_ACTAC]

[AC:P55837] [GN:RPLP]

[OR:

ACTINOBACILLUS

ACTINOMYCETEMCOMITANS

]

]SR:,

HAEMOPHILUS

ACTINOMYCETEMCOMITANS

]

[DE:50S RIBOSOMAL

PROTEIN L16] [SP:P55837]

Contig143G

22687592_c3_864

1973

6099

651

216

751

1.90E−74

sp:[LN:RL3_HAEIN]

[AC:P44344]

[GN:RPLC:RPL3:H10777]

[OR:

HAEMOPHILUS

INFLUENZAE

] [DE:50S

RIBOSOMAL PROTEIN L3]

[SP:P44344]

Contig143G

22740808_c1_550

1974

6100

4548

1515

5323

0

gp:[GI:g1750397]

[LN:PAU81261] [AC:U81261]

[PN:glutamate synthase large

subunit] [GN:gltB]

[OR:

Pseudomonas aeruginosa

]

[DE:

Pseudomonas aeruginosa

glutamate synthase large subunit

(gltB) andglutamate synthase small

subunit (gltD) genes, complete cds

andHemE homolog (hemE) gene,

partial cds.]

Contig143G

22853405_c2_638

1975

6101

1086

361

689

7.10E−68

pir:[LN:F70561] [AC:F70561]

[PN:hypothetical protein Rv3629c]

[GN:Rv3629c]

[OR:

Mycobacterium tuberculosis

]

Contig143G

23437678_f3_436

1976

6102

891

296

139

4.30E−07

sp:[LN:YISR_BACSU]

[AC:P40331:O07913] [GN:YISR]

[OR:

BACILLUS SUBTILIS

]

[DE:HYPOTHETICAL

TRANSCRIPTIONAL

REGULATOR IN WPRA-DEGA

INTERGENIC REGION]

[SP:P40331:O07913]

Contig143G

23445915_c2_713

1977

6103

915

304

432

1.20E−40

pir:[LN:A69780] [AC:A69780]

[PN:conserved hypothetical

protein ydfC] [GN:ydfC]

[OR:

Bacillus subtilis

]

Contig143G

2348436_c2_705

1978

6104

258

85

NO-HIT

Contig143G

23522925_f1_61

1979

6105

291

96

NO-HIT

Contig143G

23566025_c3_829

1980

6106

195

64

NO-HIT

Contig143G

23593840_c3_810

1981

6107

1098

365

1013

3.30E−102

sp:[LN:AROB_HAEIN]

[AC:P43879] [GN:AROB:H10208]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:4.6.1.3]

[DE:3-DEHYDROQUINATE

SYNTHASE,] [SP:P43879]

Contig143G

23601587_c1_539

1982

6108

972

323

NO-HIT

Contig143G

23610075_c3_768

1983

6109

984

327

394

1.30E−36

gp:[GI:e274873:g1907076]

[LN:HSPIRIN I] [AC:Y07867]

[PN:pirin] [OR:

Homo sapiens

]

[DE:

H.sapiens

mRNA for Pirin.

isolate I.]

Contig143G

23626555_f3_379

1984

6110

897

298

590

2.20E−57

pir:[LN:E64818]

[AC:E64818:169618]

[PN:probable membrane protein

ybiF] [GN:ybiF] [OR:

Escherichia

coli

]

Contig143G

23634626_c3_821

1985

6111

486

161

117

4.90E−11

gp:[GI:g1562565]

[LN:KDU68760] [AC:U68760]

[PN:KdpA] [GN:kdpA]

[OR:

Kingella denitrificans

]

[DE:

Kingella denitrificans

type 4

pilin protein KdpA (kdpA)

gene,complete cds.] [NT:type 4

pilin protein]

Contig143G

23707562_f1_468

1986

6112

927

308

NO-HIT

Contig143G

23860753_f3_337

1987

6113

252

83

NO-HIT

Contig143G

23865953_c1_511

1988

6114

1338

445

180

7.20E−11

pir:[LN:B70831] [AC:B70831]

[PN:probable dehydrogenase]

[GN:Rv0449c]

[OR:

Mycobacterium tubcrculosis

]

Contig143G

23868801_f3_426

1989

6115

798

265

625

4.30E−61

sp:[LN:HIS4_RHOSH]

[AC:P50936] [GN:HISA]

[OR:

RHODOBACTER

SPHAEROIDES

]

[SR:,

RHODOPSEUDOMONAS

SPHAEROIDES

] [EC:5.3.1.161

[DE:ISOMERASE,] [SP:P50936]

Contig143G

24000252_f2_268

1990

6116

510

169

389

4.40E−36

pir:[LN:A65018] [AC:A65018]

[PN:hypothetical protein b2434]

[OR:

Escherichia coli

]

Contig143G

24016942_c1_522

1991

6117

267

88

NO-HIT

Contig143G

24101540_c1_510

1992

6118

1473

490

1496

2.20E−153

sp:[LN:GABD_ECOLI]

[AC:P255526] [GN:GABD]

[OR:

ESCHERICHIA COLI

]

[EC:1.2.1.16] [DE:SUCCINATE−

SEMIALDEHYDE

DEHYDROGENASE (NADP+),

(SSDH)] [SP:P25526]

Contig143G

24218760_c2_718

1993

6119

1299

432

494

3.30E−47

pir:[LN:B69061] [AC:B69061]

[PN:hypothetical protein

MTH1458] [GN:MTH1458]

[OR:

Methanobacterium

thermoautotrophicum

]

Contig143G

24219067_c2_652

1994

6120

756

251

NO-HIT

Contig143G

24228453_c3_779

1995

6121

642

213

NO-HIT

Contig143G

24258587_c3_782

1996

6122

642

213

100

4.30E−05

sp:[LN:Y4CH_RHISN]

[AC:P55390] [GN:Y4CH]

[OR:RHIZOBIUM SP]

[DE:PROBABLE COLD SHOCK

PROTEIN Y4CH] [SP:P55390]

Contig143G

242825_f1_136

1997

6123

2847

948

3410

0

sp:[LN:UVRA_SALTY]

[AC:P37434] [GN:UVRA]

[OR:

SALMONELLA

TYPHIMURIUM

]

[DE:EXCINUCLEASE ABC

SUBUNIT A] [SP:P37434]

Contig143G

2429687_f1_351

1998

6124

1026

341

1032

3.20E−104

sp:[LN:HEM6_PSEAE]

[AC:P43898] [GN:HEMF]

[OR:

PSEUDOMONAS

AERUGINOSA

] [EC:1.3.3.3]

[DE:(COPROPORPHYRINOGEN

ASE) (COPROGEN OXIDASE)]

[SP:P43898]

Contig143G

24297782_f2_189

1999

6125

189

62

NO-HIT

Contig143G

24304625_c3_814

2000

6126

1104

367

320

9.00E−29

sp:[LN:YGCG_ECOLI]

[AC:P55140] [GN:YGCG]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 34.9 KD

PROTEIN IN CYSJ-ENO

INTERGENIC REGION (O313)]

[SP:P55140]

Contig143G

24307263_c3_863

2001

6127

360

119

449

1.90E−42

sp:[LN:RSIO_HAEIN]

[AC:P44378]

[GN:RPSJ:RPS10:H10776]

[OR:

HAEMOPHILUS

INFLUENZAE

] [DE:30S

RIBOSOMAL PROTEIN S10]

[SP:P44378]

Contig143G

24397777_f3_442

2002

6128

237

78

NO-HIT

Contig143G

24401062_f2_204

2003

6129

807

268

308

1.70E−27

pir:[LN:E70846] [AC:E70846]

[PN:hypothetical protein Rv3342]

[GN:Rv3342] [OR:

Mycobacterium

tuberculosis

]

Contig143G

24414802_c3_832

2004

6130

1284

427

1114

6.50E−113

sp:[LN:DHE3_THEMA]

[AC:P96110] [GN:GDH]

[OR:

THERMOTOGA

MARITIMA

] [EC:1.4.1.3]

[DE:GLUTAMATE

DEHYDROGENASE, (GDH)]

[SP:P96110]

Contig143G

24429058_f1_62

2005

6131

2127

708

895

1.10E−89

sp:[LN:SPOT_ECOLI]

[AC:P17580] [GN:SPOT]

[OR:

ESCHERICHIA COLI

]

[EC:3.1.7.2] [DE:((PPGPP)ASE)

(PENTA-PHOSPHATE

GUANOSINE-3′-

PYROPHOSPHOHYDROLASE)]

[SP:P17580]

Contig143G

24507812_c3_834

2006

6132

1050

349

1123

7.30E−114

gp:[GI:e1331954:g4106585]

[LN:YP102KB] [AC:AL031866]

[GN:aruF] [OR:

Yersinia pestis

]

[DE:

Yersinia pestis

102 kbases

unstable region: from 1 to

119443.] [NT:ORF17, len: 350,

aruF, probable]

Contig143G

24620342_c2_628

2007

6133

1758

585

1737

6.30E−179

gp:[GI:g3128276] [LN:AF010496]

[AC:AF0104496]

[PN:transmembrane protein DhlC

homolog] [OR:

Rhodobacter

capsulatus

] [DE:

Rhodobacter

capsulatus

strain SB1003, partial

genome.]

Contig143G

24620753_f2_205

2008

6134

549

182

91

0.00029

gp:[GI:g4156034] [LN:AE001564]

[AC:AE001564:AE001439]

[PN:putative] [GN:jhp1413]

[OR:

Helicobacter pylori

J99]

[DE:

Helicobacter pylori

, strain J99

section 125 of 132 of the

completegenome.] [NT:similar to

H. pylori

26695 gene HP1524]

Contig143G

24640830_c3_753

2009

6135

657

218

429

2.50E−40

sp:[LN:AGMR_PSEAE]

[AC:P29369] [GN:AGMR:GLPR]

[OR:

PSEUDOMONAS

AERUGINOSA

]

[DE:GLYCEROL METABOLISM

ACTIVATOR (AGMR

PROTEIN)] [SP:P29369]

Contig143G

24644541_f3_332

2010

6136

1197

398

515

1.90E−49

sp:[LN:METC_BORAV]

[AC:Q07703] [GN:METC]

[OR:

BORDETELLA AVIUM

]

[EC:4.4.1.8] [DE:(CYSTEINE

LYASE) (OSTEOTOXIN)]

[SP:Q07703]

Contig143G

24648405_f1_31

2011

6138

426

141

NO-HIT

Contig143G

24657262_f3_418

2012

6138

897

298

1255

7.50E−128

gp:[GI:g1684886]

[LN:ACU77680] [AC:U77680]

[PN:fatty acyl-CoA reductase]

]GN:acrl] [FN:reduces acyl-CoA

esters of fatty acids to fatty]

[OR:

Acinetobacter calcoaceticus

]

[DE:

Acinetobacter calcoaceticus

fatty acyl-CoA reductase (acrl)

gene,partial cds.]

Contig143G

2477083_f3_335

2013

6139

810

269

519

7.30E−50

sp:[LN:YIHA_HAEIN]

[AC:P46453] [GN:H11118]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL GTP-

BINDING PROTEIN H11118]

[SP:P46453]

Contig143G

24880291_c2_694

2014

6140

768

255

710

4.20E−70

sp:[LN:TRMD_HAEIN]

[AC:P43912]

[GN:TRMD:H10202]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:2.1.1.31]

[DE:METHYLTRANSFERASE)

(TRNA [GM37]

METHYLTRANSFERASE)]

[SP:P43912]

Contig143G

25398452_c2_654

2015

6141

1398

465

126

7.20E−06

gp:[GI:e1215351:g2687741]

[LN:LAH222725] [AC:AJ222725]

[PN:hypothetical protein] [GN:orf-

495] [FN:unknown]

[OR:

Lactobacillus helveticus

]

[DE:

Lactobacillus helveticus

plasmid pLHI complete sequence,

strainATCC15009.]

Contig143G

25402337_c1_555

2016

6142

318

105

305

3.50E−27

sp:[LN:RS16_HAEIN]

[AC:P44382]

[GN:RPSP:RPS16:H10204]

[OR:

HAEMOPHILUS

INFLUENZAE

] [DE:30S

RIBOSOMAL PROTEIN 516]

[SP:P44382]

Contig143G

25430_c3_792

2017

6143

2388

795

1932

1.40E−199

sp:[LN:YHGF_NEIME]

[AC:Q51152] [OR:

NEISSERIA

MENINGITIDIS

]

[DE:HYPOTHETICAL 83.1 KD

PROTEIN IN REGION E]

[SP:Q51152]

Contig143G

25439500_c3_852

2018

6144

717

238

196

3.50E−27

gp:[GI:g4336800] [LN:AF106002]

[AC:AF106002] [PN:toluene

tolerance protein Ttg2C]

[GN:ttg2C] [OR:

Pseudomonas

putida

] [DE:

Pseudomonas putida

strain GM73 toluene tolerance

protein Ttg2A(ttg2A), toluene

tolerance protein Ttg2B (ttg2B),

toluene toleranceprotein Ttg2C

(ttg2C), toluene tolerance protein

Ttg2D (ttg2D),toluene tolerance

protein Ttg2E (ttg2E), toluene

tolerance proteinTtg2F (ttg2F), and

UDP-N-acetylglucosamine

enolpyruvyl transferasehomolog

(ttg2G) genes, complete cds.]

[NT:hypothetical protein]

Contig143G

25441876_c2_610

2019

6145

501

166

302

7.30E−27

pir:[LN:H70450] [AC:H70450]

[PN:lipoprotein NlpD fragment]

[GN:nlpD2] [OR:

Aquifex

acolicus

]

Contig143G

25501677_c3_833

2020

6146

1233

410

1474

4.60E−151

gp:[GI:e1331955:g4106586]

[LN:YP102KB] [AC:AL031866]

[GN:aruC] [OR:

Yersinia pestis

]

[DE:

Yersinia pestis

102 kbases

unstable region: from 1 to

119443.] [NT:ORF18, len:414,

aruC, probable succinylornithine]

Contig143G

25509687_f2_283

2021

6147

339

112

309

1.30E−27

gp:[GI:d1039059:g4512356]

[LN:AB011836] [AC:AB011836]

[GN:ydzF] [OR:

Bacillus

halodurans

] [SR:

Bacillus

halodurans

(strain:C-125,

isolate:xylanase producer) DNA]

[DE:

Bacillus halodurans

C-125

genomic DNA, clone

ALBAC003.] [NT:similar to

B. subtilis

ydzF gene(545-

identity)]

Contig143G

25679511_c2_701

2022

6148

396

131

NO-HIT

Contig143G

26046911_c2_679

2023

6149

603

200

476

2.60E−45

sp:[LN:AROK_HAEIN]

[AC:P43880] [GN:AROK:H10207]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:2.7.1.71]

[DE:SHIKIMATE KINASE, (SK)]

[SP:P43880]

Contig143G

26054637_c1_572

2024

6150

1158

385

192

140E−12

gp:[GI:g1066056]

[LN:BSU39230] [AC:U39230]

[PN:SprC] [OR:Bacillus sp.]

[SR:Bacillus sp] [DE:Bacillus sp.

SprA gene, partial cds and SprB,

SpC, and SprD genes,complete

cds.] [NT:subtilisin-like protease

C]

Contig143G

26288427_c1_597

2025

6151

1047

348

NO-HIT

Contig143G

26345952_c1_547

2026

6152

741

246

412

1.60E−38

pir:[LN:S77728] [AC:S77728]

[PN:fimbrial assembly protein

pilO] [GN:pilO]

[OR:

Pseudomonas aeruginosa

]

Contig143G

26360687_c3_813

2027

6153

624

207

426

5.30E−40

pir:[LN:A71309]

[AC:A71309:S18231:S19826]

[PN:protein Tp70]

[GN:Tp70:TP0571]

[OR:

Treponema pallidum

subsp.

pallidum

] [SR:, syphilis

spirochete]

Contig143G

26461418_c1_553

2028

6154

573

190

128

1.10E−07

pir:[LN:577594] [AC:577594]

[PN:pilV protein] [GN:pilV]

[OR:

Pseudomonas aeruginosa

]

Contig143G

26595300_6_359

2029

6155

873

290

476

2.60E−45

pir:[LN:E70022] [AC:E70022]

[PN:transcription regulator LysR

family homolog yusT] [GN:yusT]

[CL:

Pseudomonas putida

regulatory protein catR]

[OR:

Bacillus subtilis

]

Contig143G

26750187_f2_217

2030

6156

1056

351

885

1.20E−88

pir:[LN:A57253]

[AC:A57253:562094]

[PN:chaperone-like protein lipB]

[GN:lipB] [OR:

Acinetobacter

calcoaceticus

]

Contig143G

26757762_c2_636

2031

6157

372

123

146

2.50E−10

sp:[LN:YTRP_LACLA]

[AC:Q02009]

[OR:

LACTOCOCCUS LACTIS

]

[SR:,

SUBSPLACTIS

:

STREPTOC

OCCUS LACTIS]

[DE:HYPOTHETICAL 13.3 KD

PROTEIN IN TRPE 5′REGION]

[SP:Q02009]

Contig143G

275_f1_83

2032

6158

363

120

NO-HIT

Contig143G

2776512_c1_568

2033

6159

1371

456

277

7.80E−24

gp:[GI:e263934:g1890583]

[LN:RMEXPGNS] [AC:Z79692]

[PN:ExpE8] [OR:

Sinorhizobium

meliloti] [DE:

R.meliloti

exp gene

cluster.]

Contig143G

290702_c3_743

2034

6160

273

90

NO-HIT

Contig143G

29323432_c3_751

2035

6161

339

112

151

730E−11

gp:[GI:e1173374:g2292734]

[LN:ARGTR] [AC:Y13942]

[GN ORFI] [FN:unknown]

[OR:

Agrobacterium radiobacter

]

[DE:

Agrobacterium radiobacter

genomic DNA for glycerol

trinitratereductase.]

Contig143G

29402178_c1_544

2036

6162

1848

615

1013

1.40E−116

pir:[LN:S54872] [AC:S54872]

[PN:penicillin-binding protein 3]

[OR:

Pseudomonas aeruginosa

]

Contig143G

29460062_c3_775

2037

6163

1902

633

1545

1.40E−158

sp:[LN:KUP_ECOLI]

[AC:P30016] [GN:KUP:TRKD]

[OR:

ESCHERICHIA COLI

]

[DE:KUP SYSTEM POTASSIUM

UPTAKE PROTEIN] [SP:P30016]

Contig143G

29489141_c3_818

2038

6164

858

285

NO-HIT

Contig143G

29492793_f2_226

2039

6165

492

163

500

7.60E−48

sp:[LN:BFR_AZOVI]

[AC:P22759] [GN:BFR]

[OR:

AZOTOBACTER

VINELANDII

]

[DE:BACTERIOFERRITIN (BFR)

(CYTOCHROME B-557.5)]

[SP:P22759]

Contig143G

29494517_c1_537

2040

6166

3189

1062

3294

0

sp:[LN:CZCA_ALCSP]

[AQ:P94177] [GN:CZCA]

[OR:ALCALIGENES SP]

[DE:CATION EFFLUX SYSTEM

PROTEIN CZCA] [SP:P94177]

Contig143G

29570382_f3_469

2041

6167

822

273

84

0.00016

gp:[GI:g47797] [LN:STOMP]

[AC:X07835] [OR:

Salmonella

typhi

] [DE:

Salmonella typhi

DNA

for outer membrane protein.]

[NT:outer membrane protein (AA

I-377)] [SP:P09878]

Contig143G

29895150_c1_551

2042

6168

1491

496

1997

1.80E−206

gp:[GI:g1750398]

[LN:PAU81261] [AC:U81261]

[PN:glutamate synthase small

subunit] [GN:gltD]

[OR:

Pseudomonas aeruginosa

]

[DE:

Pseudomonas aeruginosa

glutamate synthase large subunit

(gltB) andglutamate synthase small

subunit (gltD) genes, complete cds

andHemE homolog (hemE) gene,

partial cds.]

Contig143G

30087702_c3_806

2043

6169

1119

372

1071

2.40E−108

sp:[LN:MRAY_HAEIN]

[AC:P45062]

[GN MRAY:H11135]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:2.7.8.13]

[DE:(UDP-MURNAC-

PENTAPEPTIDE

PHOSPHOTRANSFERASE)]

[SP:P45062]

Contig143G

3017158_f2_191

2044

6170

282

93

NO-HIT

Contig143G

30361377_f1_26

2045

6171

993

330

1352

3.90E−138

sp:[LN:SYGA_MORCA]

[AC:P77892] [GN:GLYQ]

[OR:

MORAXELLA

CATARRHALIS

] [EC:6.1.1.14]

[DE:ALPHA CHAIN) (GLYRS)]

]SP:P77892]

Contig143G

30475137_f3_338

2046

6172

207

68

NO-HIT

Contig143G

30476502_c1_526

2047

6173

639

212

151

7.30E−11

gp:[GI:d1032534:g3318590]

[LN:AB015670] [AC:AB015670]

[OR:Bacillus sp.] [SR:Bacillus sp.

DNA] [DE:Bacillus sp. genes for

CDase, CGTase, MBP and 15

ORFs, partial andcomplete cds.]

[NT:A2-5a orf21; hypothetical

protein]

Contig143G

30553412_f2_290

2048

6174

1371

456

824

3.50E−82

sp:[LN:YYBF_BACSU]

[AC:P37498] [GN:YYBF]

[OR:

BACILLUS SUBTILIS

]

[DE:HYPOTHETICAL 44.2 KD

PROTEIN IN COTF-TETB

INTERGENIC REGION]

[SP:P37498]

Contig143G

30664000_f3_413

2049

6175

993

330

NO-HIT

Contig143G

30719687_c2_710

2050

6176

1536

511

1844

2.90E−190

gp:[GI:e1331953:g4106584]

[LN:YP102KB] [AC:AL031866]

[GN:aruD] [OR:

Yersinia pestis

]

[DE:

Yersinia pestis

102 kbases

unstable region: from 1 to

119443.] [NT:ORF16, len:505,

aruD, probable succinylgtutamate)

Contig143G

30756875_f2_299

2051

6177

1596

531

863

2.60E−86

sp:[LN:MOCR_RHIME]

[AC:P49309] [GN:MOCR]

[OR:

RHIZOBIUM MELILOTI

]

[DE:PROBABLE RHIZOPINE

CATABOLISM REGULATORY

PROTEIN MOCR] [SP:P49309]

Contig143G

31353426_c1_606

2052

6178

279

92

375

1.30E−34

pir:[LN:164092] [AC:164092]

[PN:ribosomal protein S19]

[CL:

Escherichia coli

ribosomal

protein S19] [OR:

Haemophilus

influenzae

]

Contig143G

31367768_c1_605

2053

6179

333

110

232

1.90E−19

sp:[LN:RL23_ECOLI]

[AC:P02424] [GN:RPLW]

[OR:

ESCHERICHIA COLI

]

[DE:50S RIBOSOMAL PROTEIN

L23] [SP:P02424]

Contig143G

31410787_c3_867

2054

6180

228

75

161

6.30E−12

sp:[LN:RL29_HAEIN]

[AC:P44365]

[GN:RPMC:RPL29:H10785]

[OR:

HAEMOPHILUS

INFLUENZAE

] [DE:50S

RIBOSOMAL PROTEIN L29]

[SP:P44365]

Contig143G

31696062_c1_538

2055

6181

972

323

872

2.90E−87

sp:[LN:CZCD_ALCEU]

[AC:P13512] [GN:CZCD]

[OR:

ALCALIGENES

EUTROPHUS

] [DE:PROTEIN

CZCD)] [SP:P13512]

Contig143G

32234840_f2_293

2056

6182

945

314

325

2.70E−29

pir:[LN:S77111] [AC:S77111]

[PN:transcription regulator

s1r1871:protein s1r1871:protein

slr1871] [CL:conserved

hypothetical protein H11364]

[OR:Synechocystis sp.] [SR:PCC

6803, , PCC 6803] [SR:PCC 6803,]

Contig143G

32281553_c1_609

2057

6183

258

85

NO-HIT

Contig143G

32422206_f3_462

2058

6184

600

199

379

5.00E−35

pir:[LN:G69776] [AC:G69776]

[PN:conserved hypothetical

protein yddQ] [GN:yddQ]

[CL:hypothetical protein yddQ]

[OR:

Bacillus subtilis

]

Contig143G

33242150_f3_352

2059

6185

1845

614

839

9.00E−84

gp:[GI:g3172117]

[LN:ACCPCAOP]

[AC:L05770:U04359:M33798:U2

0284:U11554:L13114:L03407]

[PN:acyl-COA dehydrogenase]

[OR:Acinetobacter sp. ADPI]

[DE:Acinetobacter sp. ADPI pca-

qui-pob supraoperonic cluster,

completesequence.] [NT:encodes

protein similar to acyl-CoA

dehydrogenase]

Contig143G

3324215_c3_838

2060

6186

264

87

137

2.30E−08

sp:[LN:PROA_VIBAL]

[AC:P16588] [GN:PROA]

[OR:

VIBRIO ALGINOLYTICUS

]

[EC:3.4.21.—] [DE:ALKALINE

SERINE EXOPROTEASE A

PRECURSOR,] [SP:P16588]

Contig143G

33447041_f1_430

2061

6187

807

268

894

1.30E−89

sp:[LN:H156_AZOBR]

[AC:P26721] [GN:HISF]

[OR:

AZOSPIRILLUM

BRASILENSE

] [DE:HTSF

PROTEIN (CYCLASE)]

[SP:P26721]

Contig143G

33452_f1_103

2062

6188

273

90

NO-HIT

Contig143G

33475268_f1_44

2063

6189

687

228

197

970E−16

gp:[GIg1688245]

[LN:CLU77780] [AC:U77780]

[PN.unknown[ [GN:hyp7h]

[OR:

Chlorobium limicola

]

[DE:

Chlorobium limicola

strain

DSM 249 endogenous plasmid

pCL1,complete genomic

sequence.] [NT:orf2.4; putative;

22.9 kDa, IEP 6.5; similar to]

Contig143G

33784791_c2_685

2064

6190

801

266

117

0.00011

pir:[LN:H71308] [AC:H71308]

[PN:hypothetical protein TP0570]

[GN:TP0570] [OR:

Treponema

pallidum

subsp.

pallidum

] [SR:,

syphilis spirochete]

Contig143G

33800257_f1_15

2065

6191

1128

375

419

2.90E−39

sp:[LN:CORA_SALTY]

[AC:P31 138] [GN:CORA]

[OR:

SALMONELLA

TYPHIMURIUM

]

[DE:MAGNESIUM AND

COBALT TRANSPORT

PROTEIN CORA] [SP:P31138]

Contig143G

33884438_c2_644

2066

6192

1539

512

1103

9.60E−112

sp:[LN:GABP_ECOLI]

[AC:P25527] [GN:GABP]

[OR:

ESCHERICHIA COLI

]

[DE:PERMEASE)] [SP:P25527]

Contig143G

34007968_c2_611

2067

6193

1995

664

1244

1.10E−126

sp:[LN:ODP2_PSEAE]

[AC:Q59638] [GN:ACEF:ACEB]

[OR:

PSEUDOMONAS

AERUGINOSA

] [EC:2.3.1.12]

[DE:COMPLEX, (E2)]

[SP:Q59638]

Contig143G

34171936_c3_769

2068

6194

984

327

631

9.90E−62

gp:[GI:e1331986:g4106617]

[LN:YP102KB] [AC:AL031866]

[OR:

Yersinia pestis

] [DE:

Yersinia

pestis

102 kbases unstable region:

from 1 to 119443.] [NT:ORF49,

len= 294, propable transcriptional]

Contig143G

34178877_c1_580

2069

6195

906

301

NO-HIT

Contig143G

34181562_c1_218

2070

6196

978

325

788

2.30E−78

pir:[LN:561927]

[AC:S61927:B57253] [PN:lipase

A precursor] [GN:lipA]

[CL:

Pseudomonas triacylglycerol

lipase] [OR:

Acinetobacter

calcoaceticus

]

Contig143G

34244042_c3_761

2071

6197

981

326

393

1.70E−36

gp:[GI:d1035787:g3970880]

[LN:AB0157241 [AC:AB015724]

[PN:nuclear receptor binding

factor-1] [GN:NRBF-1]

[OR::

Rattus norvegicus

] [SR:

Rattus

norvegicus

cDNA to mRNA]

[DE:

Rattus norvegicus

mRNA for

nuclear receptor binding factor-

1,complete cds.]

Contig143G

34256381_c2_680

2072

6198

207

68

NO-HIT

Contig143G

34271937_f3_439

2073

6199

909

302

224

1.30E−18

pir:[LN:D71226] [AC:D71226]

[PN:hypothetical protein PH0070]

[GN:PH0070] [OR:

Pyrococcus

horikoshii

]

Contig143G

34375016_f1_104

2074

6200

615

204

588

3.60E−57

sp:[LN:HIS7_ANASP]

[AC:Q05068] [GN:HISB]

[OR:ANABAENA SP] [SR:PCC

7120,] [EC:4.2.1.19]

[DE:IMIDAZOLEGLYCEROL-

PHOSPHATE DEHYDRATASE,

(IGPD)] [SP:Q05068]

Contig143G

34376311_c1_567

2075

6201

438

145

NO-HIT

Contig143G

34379625_f3_428

2076

6202

915

304

279

2.00E−24

pir:[LN:D69348] [AC:D69348]

[PN:conserved hypothetical

protein AF0788]

[OR:

Archaeoglobus fulgidus

]

Contig143G

34414051_c1_558

2077

6203

462

153

107

1.10E−05

sp:[LN:YQ03_MYCTU]

[AC:P71932]

[GN:MTCY441.03C]

[OR:

MYCOBACTERIUM

TUBERCULOSIS

]

[DE:HYPOTHETICAL 18.2 KD

PROTEIN CY441.03C]

[SP:P71932]

Contig143G

34414062_f3_452

2078

6204

330

109

99

2.40E−05

gp:[GI:e1215186:g2687329]

[LN:SC4H8] [AC:AL020958]

[PN:hypothetical protein

SC4H8.03] [GN:5C4H8.03]

[OR:

Streptomyces coelicolor

]

[DE:

Streptomyces coelicolor

cosmid 4H8.] [NT:SC4H8.03,

unknown hydrophobic protein, len:

102]

Contig143G

34428376_f2_186

2079

6205

864

287

555

1.10E−53

sp:[LN:AROE_ECOLI]

[AC:P15770] [GN:AROE]

[OR:

ESCHERICHIA COLI

]

[EC:1.1.1.25] [DE:SHIKIMATE 5-

DEHYDROGENASE,]

[SP:P15770]

Contig143G

34430262_f2_265

2080

6206

1464

487

602

1.20E−58

sp:[LN:ENVZ_SALTY]

[AC:P08982] [GN:ENVZ]

[OR:

SALMONELLA

TYPHIMURIUM] [EC:2.7.3.—]

[DE:OSMOLARITY SENSOR

PROTEIN ENVZ,] [SP:P08982]

Contig143G

34454692_c1_518

2081

6207

636

211

NO-HIT

Contig143G

35240830_c3_752

2082

6208

729

242

596

5.10E−58

gp:[GI:e1227115:g2765835]

[LN:AHWAAA179] [AC:Z96927]

[PN:hypothetical protein]

[OR:

Acinetobacter haemolyticus

]

[DE:

Acinetobacter haemolyticus

A

gene, strain ATCC 17906.] [RE:

Contig143G

35817712_c3_865

2083

6209

852

283

1089

2.90E−110

sp:[LN:RL2_YERPS]

[AC:P11255] [GN:RPLB]

[OR:

YERSINIA

PSEUDOTUBERCULOSIS

]

[DE:50S RIBOSOMAL PROTEIN

L2] [SP:P11255]

Contig143G

35942781_c3_849

2084

6210

1947

648

1590

2.40E−163

sp:[LN:DXS_ECOLI]

[AC:P77488] [GN:DXS]

[OR:

ESCHERICHIA COLI

] [DE:1-

DEOXYXYLULOSE-5-

PHOSPHATE SYNTHASE (DXP

SYNTHASE)] [SP:P77488]

Contig143G

35975082_c3_866

2085

6211

348

115

386

9.10E−36

sp:[LN:RL22_HAEIN]

[AC:P44360]

[GN:RPLV:RPL22:H10782]

[OR:

HAEMOPHILUS

INFLUENZAE

] [DE:50S

RIBOSOMAL PROTEIN L22]

[SP:P44360]

Contig143G

36130292_f3_356

2086

6212

2094

697

1642

7.30E−169

sp:[LN:SYGB_HAEIN]

[AC:P43822] [GN:GLYS:H10924]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:6.1.1.14]

[DE:BETA CHAIN) (GLYRS)]

[SP:P43822]

Contig143G

36204386_c2_655

2087

6213

564

187

145

3.10E−10

pir:[LN:C69895] [AC:C69895]

[PN:conserved hypothetical

protein yoaA] [GN:yoaA]

[CL:hypothetical protein yoaA]

[OR:

Bacitius subtilis

]

Contig143G

36360687_f1_5

2088

6214

1554

517

1421

1.90E−145

sp:[LN:YJGR_ECOLI]

[AC:P39342] [GN:YJGR]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 54.3 KD

PROTEIN IN PEPA-GNTV

INTERGENIC REGION (F500)]

[SP:P39342]

Contig143G

3914068_c3_830

2089

6215

477

158

NO-HIT

Contig143G

3928167_f1_73

2090

6216

2568

855

1758

2.90E−183

gp:[GI:g1763284]

[LN:PAU73780] [AC:U73780]

[PN:penicillin-binding protein 1A]

[GN:ponA] [OR:

Pseudomonas

aeruginosa

] [DE:

Pseudomonas

aeruginosa

penicillin-binding

protein 1A (ponA) gene,complete

cds, and malic enzyme gene,

partial cds.] [NT:penicillin-binding

protein; PBP1A]

Contig143G

3929137_f1_111

2091

6217

513

170

149

1.20E−10

gp:[GI:g451544] [LN:GBU04267]

[AC:U04267] [PN:proline-rich cell

wall protein] [OR:

Gossypium

barbadense

] [SR:sea-island cotton]

[DE:

Gossypium barbedense

Sea

Island proline-rich cell wall protein

genecomplete cds.]

Contig143G

3992702_c3_756

2092

6218

693

230

124

6.30E−06

pir:[LN:S76625] [AC:S76625]

[PN:hypothetical protein]

[OR:Synechocystis sp.] [SR:PCC

6803, , PCC 6803] [SR:PCC 6803,]

Contig143G

4009680_c1_528

2093

6219

387

128

NO-HIT

Contig143G

4009755_f2_185

2094

6220

606

201

549

4.90E−53

sp:[LN:GCH2_ECOLI]

[AC:P25523:P78147] [GN:RIBA]

[OR:

ESCHERICHIA COLI

]

[EC:3.5.4.25] [DE:GTP

CYCLOHYDROLASE II,]

[SP:P25523:P78147]

Contig143G

4019131_c3_816

2095

6221

1638

545

164

7.20E−09

gp:[GI:g1549377] [LN:SPU62616]

[AC:U62616] [PN:putative

membrane protein] [GN:del4]

[OR:Synechococcus PCC7942]

[DE:Synechococcus PCC7942

putative protein (dc11) gene,

partial cds,and putative proteins

(dc12), (dc13), (dc14) and (di33)

genes,complete cds.]

[NT:inactivation of this gene

produced a]

Contig143G

4072202_c2_720

2096

6222

657

218

NO-HIT

Contig143G

4079791_f2_193

2097

6223

510

169

NO-HIT

Contig143G

4100462_c3_799

2098

6224

621

206

NO-HIT

Contig143G

4103203_c2_684

2099

6225

897

298

258

3.30E−22

pir:[LN:H70882] [AC:H70882]

[PN:hypothetical protein Rv2777c]

[GN:Rv2777c]

[OR:

Mycobacterium tuberculosis

]

Contig143G

4103437_c2_620

2100

6226

417

138

203

2.20E−16

pir:[LN:E69653] [AC:E69653]

[PN:transcription regulator of glyA

trans IrpB] [GN:IrpB]

[OR:

Bacillus subtilis

]

Contig143G

4109468_c1_607

2101

6227

762

253

819

1.20E−81

pir:[LN:R3EC3]

[AC:H23129:A02699:S59051:E65

124] [PN:ribosornal protein S3]

[GN:rpsC] [CL:

Escherichia coli

ribosomal protein S3]

[OR:

Escherichia coli

] [MP:73

min]

Contig143G

4303777_f2_318

2102

6228

198

65

NO-HIT

Contig143G

4375893_f3_380

2103

6229

870

289

501

5.90E−48

pir:[LN:E64818]

[AC:E64818:169618]

[PN:probable membrane protein

ybiF] [GN:ybiF] [OR:

Escherichia

coli

]

Contig143G

437792_f3_422

2104

6230

198

65

NO-HIT

Contig143G

4428268_f2_174

2105

6231

774

257

488

1.40E−46

sp:[LN:HMPA_ALCEU]

[AC:P39662] [GN:FHP]

[OR:

ALCALIGENES

EUTROPHUS

]

[DE:FLAVOHEMOPROTEIN

(HAEMOGLOBIN-LIKE

PROTEIN)

(FLAVOHEMOGLOBIN)]

[SP:P39662]

Contig143G

4456583_c2_653

2106

6232

561

186

120

3.00E−06

gp:[GI:e1312906:g3355680]

[LN:SC1C2] [AC:AL031124]

[PN:putative transcriptional

regulator] [GN:SC1C2.13]

[OR:

Streptomyces coelicolor

]

[DE:

Streptomyces coelicolor

cosmid 1C2.] [NT:SC1C2.13,

probable transcriptional regulator,

len:]

Contig143G

4459402_c3_798

2107

6233

189

62

NO-HIT

Contig143G

4502318_c1_570

2108

6234

984

327

872

2.90E−87

gp:[GI:e1331951:g4106582]

[LN:YP102KB] [AC:AL031866]

[GN:aruE] [OR:

Yersinia pestis

]

[DE:

Yersinia pestis

102 kbases

unstable region: from 1 to

119443.] [NT:ORF14, len:330.

aruE, probable succinylglutamate]

Contig143G

4557638_c3_762

2109

6235

351

116

284

5.90E−25

sp:[LN:GLPM_PSEAE]

[AC:P52112] [GN:GLPM]

[OR:

PSEUDOMONAS

AERUGINOSA

]

[DE:MEMBRANE PROTEIN

GLPM] [SP:P52112]

Contig143G

4584653_c2_613

2110

6236

609

202

222

2.20E−18

pir:[LN:E70654] [AC:E70654]

[PN:hypothetical protein Rv3848]

[GN:Rv3848] [OR:

Mycobacterium

tuberculosis

]

Contig143G

4587787_c1_557

2111

6237

780

259

361

4.10E−33

sp:[LN:YCB9_PSEDE]

[AC:P29942]

[OR:

PSEUDOMONAS

DENITRIFICANS

]

[DE:HYPOTHETICAL 27.4 KD

PROTEIN IN COBO 3′REGION

(ORF9)] [SP:P29942]

Contig143G

4687913_f1_41

2112

6238

213

70

NO-HIT

Contig143G

4704437_c3_745

2113

6239

834

277

660

8.40E−65

pir:[LN:G70385] [AC:G70385]

[PN:conserved hypothetical

protein aq_990] [GN:aq_990]

[OR:

Aquifex aeolicus

]

Contig143G

4713942_c1_507

2114

6240

591

196

458

2.10E−43

sp:[LN:SSB_ECOLI]

[AC:P02339]

[GN:SSB:EXRB:LEXC]

[OR:

ESCHERICHIA COLI

]

[DE:SINGLE-STRAND

BINDING PROTEIN (SSB)

(HELIX-DESTABILIZING

PROTEIN)] [SP:P02339]

Contig143G

4726552_f3_461

2115

6241

1143

380

394

1.30E−36

sp:[LN:SSUD_BACSU]

[AC:P40402] [GN:SSUD]

[OR:

BACILLUS SUBTILIS

]

[EC:1.1.—.—] [DE:PUTATIVE

ALIPHATIC SULFONATE

MONOOXYGENASE,]

[SP:P40402]

Contig143G

47327_c1_534

2116

6242

2202

733

731

2.50E−72

pir:[LN:B70979] [AC:B70979]

[PN:hypothetical protein Rv3273]

[GN:Rv3273] [OR:

Mycobacterium

tuberculosis

]

Contig143G

4767787_c2_728

2117

6243

195

64

NO-HIT

Contig143G

4783193_f1_102

2118

6244

1524

507

1995

2.90E−206

gp:[GI:g3249555] [LN:AF010184]

[AC:AF010184] [PN:coenzyme A

transferase PsecoA] [GN:psecoA]

[OR:

Pseudomonas aeruginosa

]

[DE:

Pseudomonas aeruginosa

coenzyme A transferase PsecoA

(psecoA) gene,complete cds.]

[NT: Iocated downstream of the A-

band polysaccharide]

Contig143G

4800303_f3_432

2119

6245

699

232

800

1.20E−79

sp:[LN:AQPZ_ECOLI]

[AC:P48838:P75827:Q47159]

[GN:AQPZ:BNIP]

[OR:

ESCHERICHIA COLI

]

[DE:AQUAPORIN Z

(BACTERIAL NODULIN-LIKE

INTRINSIC PROTEIN)]

[SP:P48838:P75827:Q47159]

Contig143G

4804703_c1_595

2120

6246

402

133

124

5.30E−08

pir:[LN:D69663] [AC:D69663]

[PN:mutator protein mutT]

[GN:mutT] [CL:mutT domain

homotogy] [OR:

Bacillus subtilis

]

Contig143G

4859755_f1_389

2121

6247

315

104

185

1.80E−14

sp:[LN:RPOZ_ECOLI]

[AC:P08374] [GN:RPOZ]

[OR:

ESCHERICH

A COLI]

[EC:2.7.7.6] [DE:OMEGA

CHAIN) (RNA POLYMERASE

OMEGA SUBUNIT)]

[SP:P08374]

Contig143G

4860968_c2_646

2122

6248

1302

433

1338

1.20E−136

sp:[LN:GOAG_ECOLI]

[AC:P50457:P78150]

[GN:GOAG] [OR:

ESCHERICHIA

COLI

] [EC:2.6.1.19]

[DE:TRANSAMINASE) (GABA

AMINOTRANSFERASE)]

[SP:P50457:P78150]

Contig143G

4870658_f1_21

2123

6249

333

110

NO-HIT

Contig143G

4882202_c1_489

2124

6250

1701

566

1244

1.10E−126

sp:[LN:RECJ_HAEIN]

[AC:P45112] [GN:RECJ:H11214]

[OR:

HAEMOPHILUS

INFLUENZAE] [EC:3.1.—.—]

[DE:SINGLE-STRANDED-DNA-

SPECIFIC EXONUCLEASE

RECJ.] [SP:P45112]

Contig143G

4884702_c2_711

2125

6251

312

103

NO-HIT

Contig143G

4894050_f2_285

2126

6252

261

86

NO-HIT

Contig143G

4960952_c3_803

2127

6253

1002

333

1096

5.30E−111

gp:[GI:g4323056] [LN:AF098509]

[AC:AF098509] [PN:putative

sulfur-binding protein] [GN:sbp]

[OR:

Enterobacter cloacae

]

[DE:

Enterobacter cloacae

phosphofructokinase (pfkA),

putativesulfur-binding protein

(sbp), putative CDP-diglyceride

hydrotase(cdh), and triose

phosphate isomerase (tpi) genes,

complete cds;and unknown genes.]

Contig143G

505062_f1_64

2128

6254

306

101

NO-HIT

Contig143G

5117012_f3_424

2129

6255

573

190

115

4.80E−07

sp:[LN:YHAI_ECOLI]

[AC:P42622] [GN:YHAI]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 13.5 KD

PROTEIN IN EXUR-TDCC

INTERGENIC REGION].

[SP:P42622]

Contig143G

5134375_f3_334

2130

6256

450

149

266

4.70E−23

pir:[LN:C69825] [AC:C69825]

[PN:conserved hypothetical

protein vhdE] [GN:yhdE]

[CL:hypothetical protein b2531]

[OR:

Bacillus subtilis

]

Contig143G

516917_c2_700

2131

6257

399

132

NO-HIT

Contig143G

5214153_c1_492

2132

6258

1071

356

829

1.00E−82

gp:[GI:e1173375:g2623967]

[LN:ARGTR] [AC:Y13942]

[PN:GTN Reductase] [GN:nerA]

[FN:Liberates nitrite from

nitroglycerine and]

[OR:

Agrobacterium radiobacter

]

[DE:

Agrobacterium radiobacter

genomic DNA for glyecrol

trinitratereductase.]

Contig143G

5257693_c2_678

2133

6259

618

205

263

9.90E−23

pir:[LN:S77729] [AC:S77729]

[PN:timbrial assembly protein pilP

precursor] [GN:pilP]

[OR:

Pseudomonas aeruginosa

]

Contig143G

5275002_f1_112

2134

6260

210

69

NO-HIT

Contig143G

5282838_c1_574

2135

6261

294

97

NO-HIT

Contig143G

5349062_c1_520

2136

6262

1128

375

262

1.30E−22

sp:[LN:NUCI_CUNEE]

[AC:P81203] [GN:NUCICE]

[OR:

CUNNINGHAMELLA

ECHINULATA

VARECHINULATA

] [EC:3.1.30.—]

[DE:NUCLEASE CI,]

[SP:P81203]

Contig143G

5351457_f2_314

2137

6263

786

261

NO-HIT

Contig143G

548128_f1_119

2138

6264

219

72

NO-HIT

Contig143G

5864080_c1_502

2139

6265

1815

604

314

1.00E−26

pir:ILN:H70302] [AC:H70302]

[PN:conserved hypothetical

protein aq_035] [GN:aq_035]

[OR:

Aquifex aeolicus

]

Contig143G

5978383_c1_545

2140

6266

1503

500

764

8.00E−76

sp:[LN:MURE_HAEIN]

[AC:P45060]

[GN:MURE:H11133]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:6.3.2.13]

[DE:(EC 6.32.13) (UDP-N-

ACETYLMURAMYL-

TRIPEPTIDE SYNTHETASE)]

[SP:P45060]

Contig143G

5978417_c3_811

2141

6267

879

292

NO-HIT

Contig143G

5992890_f1_88

2142

6268

351

116

NO-HIT

Contig143G

6034450_c1_599

2143

6269

966

321

620

1.50E−60

pir:[LN:D64775]

[AC:D64775:JH04-1:PS0216]

[PN:acyl-COA thiolesterase, II

precursor] [GN:tesB] [CL:acyl-

CoA thiolesterase II]

[OR:

Escherichia coli

] [EC:3.1.2.—]

Contig143G

6126538_c3_808

2144

6270

1068

355

973

5.70E−98

gp:[GI:g895925] [LN:PSEPONA]

[AC:L28837] [PN:membrane

protein] [GN:pitM] [FN:apparent

membrane protein required in

pilus] [OR:

Pseudomonas syringae

]

[SR:

Pseudomonas syringae

(pathovar phaseolicola, strain

HBIOY) DNA] [DE:

Pseudomonas

syringae

penicillin binding protein

(ponA), membraneproteins (pitN,

pitO) pilus expression proteins

(pitM, pitP)genes, complete cds

and pilus expression protein (pilQ)

gene,partial cds.] [NT:putative;

ORF 1]

Contig143G

6288908_c1_506

2145

6271

1452

483

890

3.60E−89

sp:[LN:YAJR_ECOLI]

[AC:P77726] [GN:YAJR]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 49.0 KD

PROTEIN IN ABPA-CYOE

INTERGENIC REGION]

[SP:P77726]

Contig143G

6297067_f2_319

2146

6272

990

329

349

7.60E−32

pir:[LN:A69443] [AC:A69443]

[PN:conserved hypothetical

protein AF1546]

[OR:

Archaeoglobus fulgidus

]

Contig143G

635305_c3_800

2147

6273

1272

423

536

2.30E−56

sp:[LN:CZCB_ALCEU]

[AC:P13510] [GN:CZCB]

[OR:

ALCALIGENES

EUTROPHUS

] [DE:PROTEIN

CZCB)] [SP:P13510]

Contig143G

6382812_f3_374

2148

6274

2160

719

1538

7.70E−158

sp:[LN:YCCS_ECOLI]

[AC:P75870] [GN:YCCS]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 82.0 KD

PROTEIN IN SULA-HELD

INTERGENIC REGION]

[SP:P75870]

Contig143G

641928_f2_280

2149

6275

189

62

NO-HIT

Contig143G

6453337_c1_569

2150

6276

1410

469

1580

2.70E−162

gp:[GI:e1331952:g4106583]

[LN:YP102KB] [AC:AL031866]

[GN:aruB] [OR:

Yersinia pestis

]

[DE:

Yersinia pestis

102 kbases

unstable region: from 1 to

119443.] [NT:ORF15,ten: 447,

aruB, probable succinyarginine]

Contig143G

664076_c2_686

2151

6277

510

169

372

2.80E−34

gp:[GI:g2801829] [LN:AF042829]

[AC:AF042829] [PN:fimbrillin]

[GN:fimA] [OR:

Xanthomonas

citri

] [DE:

Xanthomonas citri

fimbrillin (timA) gene, complete

cds.]

Contig143G

6640937_c2_689

2152

6278

504

167

125

4.10E−08

gp:[GI:g1161221]

[LN:PSEPILRV] [AC:L48934]

[GN:fimU] [OR:

Pseudomonas

aeruginosa

] [DE:

Pseudomonas

aeruginosa

(isolate pRIC351) pilR

gene, 3′ end of cds,dada*, fimT,

fimU and pilV genes, complete

cds.] [NT:contains pre-pilin like

leader sequence; involved]

Contig143G

6641937_c3_855

2153

6279

906

301

126

1.30E−05

sp:[LN:YEEZ_ECOLI]

[AC:P76370] [GN:YEEZ]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 29.7 KD

PROTEIN IN SBCB-HISL

INTERGENIC REGION

PRECURSOR] [SP:P76370]

Contig143G

6728383_c1_513

2154

6280

426

141

94

0.00028

gp:[GI:e1132704:g2408054]

[LN:SPAC29B12] [AC:Z99164]

[PN:hypothetical protein]

[GN:SPAC29B12.13]

[OR:

Schizosaccharomyces pombe

]

[SR:fission yeast] [DE:

S.pombe

chromosome I cosmid c29B12.]

[NT:SPAC29B12.13, unknown,

len:13]

Contig143G

672917_f2_175

2155

6281

669

222

245

8.00E−21

sp:[LN:COMF_HAEIN]

[AC:P31773] [GN:COMF:H10434]

[OR:

HAEMOPHILUS

INFLUENZAE

] [DE:COM101A)]

[SP:P31773]

Contig143G

6739416_f1_52

2156

6282

1290

429

1364

2.10E−139

sp:[LN:SERA_HAEIN]

[AC:P43885] [GN:SERA:H10465]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:1.1.1.95]

[DE:D-3-

PHOSPHOGLYCERATE

DEHYDROGENASE, (PGDH)]

[SP:P43885]

Contig143G

6775018_c2_692

2157

6283

435

144

153

4.50E−11

pir:[LN:S54700] [AC:S54700]

[PN:PilE protein]

[OR:

Pseudomonas aeruginosa

]

Contig143G

6835327_c3_807

2158

6284

333

110

NO-HIT

Contig143G

6912500_f2_261

2159

6285

711

236

NO-HIT

Contig143G

6928563_f3_339

2160

6286

2589

862

1252

1.60E−127

pir:[LN:XUECAG]

[AC:A00565:C42956:H65211]

[PN:glycerol-3-phosphate O-

acyltransferase,] [GN:plsB]

[CL:glycerol-3-phosphate

acyltransferase] [OR:

Escherichia

coli

] [EC:2.3.1.15] [MP:92 min]

Contig143G

7220417_c2_722

2161

6287

2328

775

130

0.00039

gp:[GI.g1141790]

[LN:DMU35816] [AC:U35816]

[PN:nonmuscle myosin-II heavy

chain] [GN:zip] [OR:

Drosophila

melanogaster

] [SR:fruit fly]

[DE:

Drosophila melanogaster

nonmuscle myosin-II heavy chain

(zip) gene,complete cds.]

Contig143G

781627_c3_783

2162

6288

426

141

NO-HIT

Contig143G

801052_f2_270

2163

6289

672

223

201

7.90E−15

gp:[GI:g3851581] [LN:AF091216]

[AC:AF091216] [PN:Wrn protein]

[GN:Wrn] [OR:

Mus musculus

]

[SR:house mouse] [DE:

Mus

musculus

Wrn protein (Wrn) gene,

complete, cds.]

Contig143G

860662_f1_106

2164

6290

210

69

NO-HIT

Contig143G

901092_f1_57

2165

6291

261

86

NO-HIT

Contig143G

970000_f2_284

2166

6292

246

81

NO-HIT

Contig143G

977162_f1_125

2167

6293

258

85

NO-HIT

Contig143G

978452_f3_336

2168

6294

951

316

498

1.20E−47

pir:[LN:H70882] [AC.H70882]

[PN:hypothetical protein Rv2777c]

[GN:Rv2777c]

[OR:

Mycobacterium tuberculosis

]

Contig143G

9808333_f1_67

2169

6295

213

70

NO-HIT

Contig143G

9853412_c1_536

2170

6296

1419

472

223

9.90E−16

pir:[LN:JC4698] [AC:JC4698]

[PN:divalent cation resistant

determinant protein C] [GN:czcC]

[OR:Alcaligenes sp.]

Contig143G

994651_c1_486

2171

6297

1494

497

2416

7.00E−251

sp:[LN:IMDH_ACICA]

[AC:P31002] [GN:GUAB]

[OR:

ACINETOBACTER

CALCOACETICUS

]

[EC:1.1.1.205]

[DE:DEHYDROGENASE)

(IMPDH) (IMPD)] [SP:P31002]

Contig143G

9957327_f1_24

2172

6298

255

84

156

2.10E−11

pir:[LN:E70043] [AC:E70043]

[PN:hypothetical protein yvlC]

[GN:yvlC] [OR:

Bacillus subtilis

]

Contig144G

10972025_c1_12

2173

6299

540

179

580

2.50E−56

pir:[LN:R5EC6]

[AC:D65123:A02765]

[PN:ribosomal protein L6]

[GN:rplF] [CL:

Escherichia coli

ribosomal protein L6]

[OR:

Escherichia coli

] [MP:73

min]

Contig144G

10992630_c2_18

2174

6300

1383

461

1294

5.50E−132

sp:[LN:SECY_ECOLI]

[AC:P03844] [GN:SECY:PRLA]

[OR:

ESCHERICHIA COLI

]

[DE:PREPROTEIN

TRANSLOCASE SECY

SUBUNIT] [SP:P03844]

Contig144G

16992253_c1_10

2175

6301

549

182

674

2.80E−66

pir:[LN:H64093] [AC:H64093]

[PN:ribosomal protein L5]

[CL:

Escherichia coli

ribosomal

protein L5] [OR:

Haemophilus

influenzae]

Contig144G

2072158_c2_17

2176

6302

444

147

502

4.60E−48

sp:[LN:RL15_HAEIN]

[AC:P44353]

[GN:RPLO:RPL15:HI0797]

[OR:

HAEMOPHILUS

INFLUENZAE

] [DE:50S

RIBOSOMAL PROTEIN L15]

[SP:P44353]

Contig144G

22689702_c3_19

2177

6303

396

131

429

2.50E−40

pir:[LN:A64094] [AC:A64094]

[PN:ribosomal protein S8]

[CL:

Escherichia coli

ribosomal

protein S8] [OR:

Haemophilus

influenzae

]

Contig144G

24644055_c2_16

2178

6304

183

60

193

2.60E−15

sp:[LN:RL30_ACYKS]

[AC:P46184] [GN:RPMD]

[OR:ACYRTHOSIPHON

KONDOI SYMBIOTIC

BACTERIUM] [DE:50S

RIBOSOMAL PROTEIN L30]

[SP:P46184]

Contig144G

34023563_c3_20

2179

6305

375

124

334

2.90E−30

sp:[LN:RL18_VIBPR]

[AC:P52863] [GN:RPLR]

[OR:

VIBRIO PROTEOLYTICUS

]

[SR:,

AEROMONAS

PROTEOLYTICA

] [DE:50S

RIBOSOMAL PROTEIN L18]

[SP:P52863]

Contig144G

35183342_c2_15

2180

6306

519

172

613

8.00E−60

pir:[LN:R3EC5]

[AC:B65123:A02707]

[PN:ribosomal protein S5]

[GN:rpsE] [CL:

Escherichia coli

ribosomal protein S5]

[OR:

Escherichia coli

] [MP:73

min]

Contig144G

4112963_c1_11

2181

6307

315

104

324

3.40E−29

pir:[LN:R3EC14]

[AC:F65123:A02732]

[PN:ribosomal protein S14]

[GN:rpsN] [CL:

Escherichia coli

ribosomal protein S14]

[OR:

Escherichia coli

] [MP:73

min]

Contig145G

10975428_c1_102

2182

6308

651

216

358

6.70E−45

sp:[LN:MIAE_SALTY]

[AC:Q08015] [GN:MIAE]

[OR:

SALMONELLA

TYPHIMURIUM

] [EC:1.—.—.—]

[DE:TRNA-(MS[2]IO[6]A)-

HYDROXYLASE,] [SP:Q08015]

Contig145G

11128593_c2_116

2183

6309

1101

366

860

5.40E−86

sp:[LN:ERA_ECOLI]

[AC:P06616] [GN:ERA:RBAA]

[OR:

ESCHERICHIA COLI

]

[DE:GTP-BINDING PROTEIN

ERA] SP:P06616]

Contig145G

11750001_f2_51

2184

6310

591

196

346

1.60E−31

gp:[GI:e327826:g2251192]

[LN:PAOPRLGN] [AC:Z50191]

[PN:outer membrane protein]

[GN:oprL] [OR:

Pseudomonas

aeruginosa

] [DE:

P.aeruginosa

oprL gene.]

Contig145G

1182157_c3_127

2185

6311

681

226

320

9.00E−29

pir:[LN:S77001] [AC:S77001]

[PN:hypothetical protein slr0787]

[CL:mutT domain homology]

[OR:Synechocystis sp.] [SR:PCC

6803,, PCC 6803] [SR:PCC 6803,]

Contig145G

11974168_f2_27

2186

6312

1371

456

1494

3.50E−153

sp:[LN:NADB_PSEAE]

[AC:Q51363:Q51412]

[GN:NADB]

[OR:

PSEUDOMONAS

AERUGINOSA

] [EC:1.4.3.16]

[DE:L-ASPARTATE OXIDASE,

(QUINOLINATE SYNTHETASE

B)] [SP:Q51363:Q51412]

Contig145G

14734692_f3_75

2187

6313

741

246

512

4.10E−49

sp:[LN:TOLQ_PSEAE]

[AC:P50598] [GN:TOLQ]

[OR:

PSEUDOMONAS

AERUGINOSA

] [DE:TOLQ

PROTEIN] [SP:P50598]

Contig145G

15660767_c1_91

2188

6314

3885

1294

3770

0

sp:[LN:PURL_ECOLI]

[AC:P15254:P78097]

[GN:PURL:PURI]

[OR:

ESCHERICHIA COLI

]

[EC:6.3.5.3] [DE:SYNTHASE)

(FORMYLGLYCINAMIDE

RIBOTIDE

AMIDOTRANSFERASE)

(FGARAT)] [SP:P15254:P78097]

Contig145G

19766932_c2_112

2189

6315

1461

486

964

5.10E−97

gp:[GI:g1184684]

[LN:PAU32853] [AC:U32853]

[PN:MucD] [GN:mucD]

[OR:

Pseudomonas aeruginosa

]

[DE:

Pseudomonas aeruginosa

mucC and mucD genes, complete

cds.] [NT:HtrA serine protease

homolog; similar to

E. coli

]

Contig145G

19961562_c1_93

2190

6316

822

273

NO-HIT

Contig145G

2000025_f1_8

2191

6317

639

212

200

4.70E−16

gp:[GI:e1264045:g2959318]

[LN:CBFMS] [AC:Z96934]

[PN:hypothetical protein]

[OR:

Clostridium beijerinckii

]

[DE:

Clostridium beijerinckii

fms

gene.] RE:

Contig145G

21489077_f3_66

2192

6318

924

307

848

1.00E−84

sp:[LN:CBL_KLEAE]

[AC:Q08598] [GN:CBL]

[OR:

KLEBSIELLA

AEROGENES

]

[DE:TRANSCRIPTIONAL

REGULATOR CBL] [SP:Q08598]

Contig145G

22682052_f2_25

2193

6319

201

66

NO-HIT

Contig145G

22790906_c2_114

2194

6320

1821

606

2286

4.20E−237

sp:[LN:LEPA_ECOLI]

[AC:P07682:P76590] [GN:LEPA]

[OR:

ESCHERICHIA COLI

]

[DE:GTP-BINDING PROTEIN

LEPA] [SP:P07682:P76590]

Contig145G

23634633_f2_49

2195

6321

1407

468

449

2.60E−41

pir:[LN:A44937]

[AC:A44937:S27855]

[PN:kinetoplast-associated

protein:probable structural protein

KAP] [CL:kinetoplast-associated

protein] [OR:

Trypanosoma cruzi

]

Contig145G

23989426_f2_50

2196

6322

1332

443

733

1.50E−72

gp:[GI:g1685080] [LN:HIU32470]

[AC:U32470] [PN:TolB]

[OR:

Haemophilus influenzae

]

[DE:

Haemophilus influenzae

tolQRAB gene cluster, inner

membrane protein(tolQ) gene,

partial cds, inner membrane

protein (tolR), outermembrane

integrity protein (tolA) and colicin

tolerance protein(tolB) genes,

complete cds.] NT:colicin

tolerance protein; similar to

E. coli

TolB,]

Contig145G

24473813_c3_119

2197

6323

306

101

NO-HIT

Contig145G

246017_c2_113

2198

6324

462

153

119

1.80E−07

pir:[LN:B71359] [AC:B71359]

[PN:conserved hypothetical

protein TP0156] [GN:TP0156]

[OR:

Treponema pallidum

subsp.

pallidum

] [SR:, syphilis

spirochete]

Contig145G

24632628_c3_143

2199

6325

798

265

845

2.10E−84

sp:[LN:YDFG_HAEIN]

[AC:P45200] [GN:HI1430]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:1.—.—.—]

[DE:HYPOTHETICAL

OXIDOREDUCTASE HI1430,]

[SP:P45200]

Contig145G

24667833_c3_134

2200

6326

183

60

NO-HIT

Contig145G

24692137_f1_69

2201

6327

594

197

176

1.60E−13

pir:[LN:C69870] [AC:C69870]

[PN:conserved hypothetical

protein ykwD] [GN:ykwD]

[OR:

Bacillus subtilis

]

Contig145G

24703402_f2_39

2202

6328

696

231

542

2.70E−52

pir:[LN:S75967] [AC:S75967]

[PN:hypothetical protein]

[CL:conserved hypothetical

protein HI1191]

[OR:Synechocystis sp.] [SR:PCC

6803,, PCC 6803] [SR:PCC 6803,]

Contig145G

24881650_f1_9

2203

6329

1080

359

913

1.30E−91

sp:[LN:CYSA_ECOLI]

[AC:P16676:P77693] [GN:CYSA]

[OR:

ESCHERICHIA COLI

]

[DE:SULFATE TRANSPORT

ATP-BINDING PROTEIN CYSA]

[SP:P16676:P77693]

Contig145G

25478438_f2_40

2204

6330

465

154

277

3.20E−24

pir:[LN:S74552] [AC:S74552]

[PN:bacterioferritin comigratory

protein bcp:hypothetical protein

slr0242:hypothetical protein

slr0242] [GN:bcp]

[CL:bacterioferritin comigratory

protein:alkyl hydroperoxidase c22

protein homology]

[OR:Synechocystis sp.] [SR:PCC

6803,, PCC 6803] [SR:PCC 6803,]

Contig145G

25595277_f1_17

2205

6331

1029

342

1226

8.80E−125

sp:[LN:RUVB_PSEAE]

[AC:Q51426] [GN:RUVB]

[OR:

PSEUDOMONAS

AERUGINOSA

] [DE:HOLLIDAY

JUNCTION DNA HELICASE

RUVB] [SP:Q51426]

Contig145G

25912812_f3_81

2206

6332

717

238

123

3.90E−06

sp:[LN:SIGX_BACSU]

[AC:P35165] [GN:SIGX]

[OR:

BACILLUS SUBTILIS

]

[DE:RNA POLYMERASE

SIGMA FACTOR SIGX]

[SP:P35165]

Contig145G

26353408_f3_68

2207

6333

561

186

278

2.50E−24

pir:[LN:H69339] [AC:H69339]

[PN:conserved hypothetical

protein AF0720]

[OR:

Archacoglobus fulgidus

]

Contig145G

26610143_c3_140

2208

6334

834

277

333

6.60E−52

sp:[LN:LEP_SALTY]

[AC:P23697] [GN:LEPB]

[OR:

SALMONELLA

TYPHIMURIUM

] [EC:3.4.21.89]

[DE:SIGNAL PEPTIDASE I,

(SPASE I) (LEADER

PEPTIDASE I)] [SP:P23697]

Contig145G

26803902_f1_21

2209

6335

339

112

NO-HIT

Contig145G

26804706_c2_115

2210

6336

420

139

NO-HIT

Contig145G

29407913_c3_117

2211

6337

1146

381

NO-HIT

Contig145G

30131288_f1_19

2212

6338

540

179

222

2.20E−18

sp:[LN:YBGC_HAEIN]

[AC:P44679] [GN:HI0386]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

HI0386] [SP:P44679]

Contig145G

30161312_f2_53

2213

6339

426

141

NO-HIT

Contig145G

32134637_f1_20

2214

6340

1029

342

874

1.80E−87

sp:[LN:F16P_ALCEU]

[AC:P19911] [GN:CBBFC:CFXF]

[OR:

ALCALIGENES

EUTROPHUS

] [EC:3.1.3.11]

[DE:1,6-BISPHOSPHATE 1-

PHOSPHOHYDROLASE)

(FBPASE)] [SP:P19911]

Contig145G

3256442_f1_7

2215

6341

1068

355

1118

2.50E−113

pir:[LN:BYEC]

[AC:S40860:H65197:B25206:A94

501:A23719:S78618] [PN:sulphate

binding protein precursor,

periplasmic:sulfate starvation-

induced protein SSI2] [GN:sbp]

[CL:sulfate-binding protein]

[OR:

Escherichia coli

] [MP:88

min]

Contig145G

3322287_f3_76

2216

6342

843

280

139

4.20E−07

pir:[LN:S27846] [AC:S27846]

[PN:hypothetical protein]

[OR:

Trypanosoma brucei

]

Contig145G

33417167_f3_70

2217

6343

816

271

331

6.10E−30

gp:[GI:e1351730:g3878905]

[LN:CER06F6] [AC:Z46794]

[GN:R06F6.9] [OR:

Caenorhabditis

elegans

] [DE:

Caenorhabditis

elegans

cosmid R06F6, complete

sequence.] [NT:similarity to enoyl

CoA hydratase. Amino terminus]

Contig145G

34063376_f2_33

2218

6344

930

309

770

1.90E−76

sp:[LN:CYSW_SYNY3]

[AC:P74547]

[GN:CYSW:SLR1454]

[OR:SYNECHOCYSTIS SP]

[SR:PCC 6803,] [DE:SULFATE

TRANSPORT SYSTEM

PERMEASE PROTEIN CYSW]

[SP:P74547]

Contig145G

34100317_c3_136

2219

6345

429

142

NO-HIT

Contig145G

34259386_c3_141

2220

6346

708

235

615

4.90E−60

sp:[LN:RNC_ECOLI]

[AC:P05797:P06141] [GN:RNC]

[OR:

ESCHERICHIA COLI

]

[EC:3.1.26.3]

[DE:RIBONUCLEASE III,

(RNASE III)]

[SP:P05797:P06141]

Contig145G

35157041_f3_80

2221

6347

798

265

286

3.60E−25

sp:[LN:YG73_SYNY3]

[AC:P74261] [GN:SLR1673]

[OR:SYNECHOCYSTIS SP]

[SR:PCC 6803,] [EC:2.1.1.—]

[DE:HYPOTHETICAL

TRNA/RRNA

METHYLTRANSFERASE

SLR1673,] [SP:P74261]

Contig145G

35760927_c3_135

2222

6348

831

276

350

5.90E−32

sp:[LN:PABC_ECOLI]

[AC:P28305] [GN:PABC]

[OR:

ESCHERICHIA COLI

]

[EC:4.—.—.—] [DE:4-AMINO-4-

DEOXYCHORISMATE LYASE,

(ADC LYASE)] [SP:P28305]

Contig145G

36601553_f2_26

2223

6349

315

104

262

6.90E−22

sp:[LN:NADB_PSEAE]

[AC:Q51363:Q51412]

[GN:NADB]

[OR:

PSEUDOMONAS

AERUGINOSA

] [EC:1.4.3.16]

[DE:L-ASPARTATE OXIDASE,

(QUINOLINATE SYNTHETASE

B)] [SP:Q51363:Q51412]

Contig145G

3906263_c1_101

2224

6350

735

244

760

2.10E−75

sp:[LN:PDXJ_ECOLI]

[AC:P24223] [GN:PDXJ]

[OR:

ESCHERICHIA COLI

]

[DE:PYRIDOXAL PHOSPHATE

BIOSYNTHETIC PROTEIN

PDXJ] [SP:P24223]

Contig145G

3914053_f3_67

2225

6351

426

141

NO-HIT

Contig145G

3942580_f2_48

2226

6352

528

175

255

6.90E−22

pir:[LN:A71687] [AC:A71687]

[PN:tolR protein (tolR) RP310]

[GN:tolR:RP310] [OR:

Rickettsia

prowazekii

]

Contig145G

3961378_c2_106

2227

6353

189

62

NO-HIT

Contig145G

4035637_f2_46

2228

6354

609

202

470

1.10E−44

sp:[LN:RUVA_PSEAE]

[AC:Q51425] [GN:RUVA]

[OR:

PSEUDOMONAS

AERUGINOSA

] [DE:HOLLIDAY

JUNCTION DNA HELICASE

RUVA] [SP:Q51425]

Contig145G

4071011_c3_142

2229

6355

693

230

254

8.90E−22

sp:[LN:RECO_COXBU]

[AC:P51838] [GN:RECO]

[OR:

COXIELLA BURNETII

]

[DE:DNA REPAIR PROTEIN

RECO HOMOLOG] [SP:P51838]

Contig145G

4120263_f1_18

2230

6356

1344

447

630

1.30E−61

pir:[LN:G71097] [AC:G71097]

[PN:probable amidohydrolase]

[GN:PH1043] [OR:

Pyrococcus

horikoshii

]

Contig145G

429640_f1_10

2231

6357

858

285

1074

1.10E−108

sp:[LN:DAPD_ECOLI]

[AC:P03948] [GN:DAPD]

[OR:

ESCHERICHIA COLI

]

[EC:2.3.1.117] [DE:(THP

SUCCINYLTRANSFERASE)

(TETRAHYDROPICOLINATE

SUCCINYLASE)] [SP:P03948]

Contig145G

4305277_c1_98

2232

6358

1086

361

612

1.00E−59

sp:[LN:YCEG_HAEIN]

[AC:P44720] [GN:HI0457]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

HI0457] [SP:P44720]

Contig145G

4329693_f3_65

2233

6359

843

280

727

6.70E−72

sp:[LN:CYST_SYNY3]

[AC:Q01895]

[GN:CYST:SLR1453]

[OR:SYNECHOCYSTIS SP]

[SR:PCC 6803,] [DE:SULFATE

TRANSPORT SYSTEM

PERMEASE PROTEIN CYST]

[SP:Q01895]

Contig145G

467327_f1_16

2234

6360

1341

446

720

3.70E−71

pir:[LN:S76527] [AC:576527]

[PN:hypothetical protein]

[OR:Synechocystis sp.] [SR:PCC

6803,, PCC 6803] [SR:PCC 6803,]

Contig145G

4883442_c2_105

2235

6361

1215

404

522

3.50E−50

gp:[GI:g3378262] [LN:AF079317]

[AC:AF079317] [PN:unknown]

[GN:orf003] [OR:

Sphingomonas

aromaticivorans

]

[DE:

Sphingomonas

aromaticivorans

plasmid pNL1,

complete plasmidsequence.]

[NT:putative inner membrane

protein; similar to]

Contig145G

5289068_c1_99

2236

6362

609

202

383

1.90E−35

sp:[LN:KTHY_BACSU]

[AC:P37537] [GN:TMK]

[OR:

BACILLUS SUBTILIS

]

[EC:2.7.4.9]

[DE:THYMIDYLATE KINASE,

(DTMP KINASE)] [SP:P37537]

Contig145G

797153_c3_126

2237

6363

330

109

249

4.20E−21

gp:[GI:e1293607:g3150237]

[LN:MLCB1243] [AC:AL023635]

[PN:hypothetical protein

MLCB1243.36]

[GN:MLCB1243.36]

[OR:

Mycobacterium leprae

]

[DE:

Mycobacterium leprae

cosmid

B1243.] [NT:MLCB1243.36,

unknown, len: 385; similar to]

Contig145G

9799140_f1_11

2238

6364

726

241

213

2.00E−17

pir:[LN:F70474] [AC:F70474]

[PN:conserved hypothetical

protein aq_2035] [GN:aq_2035]

[OR:

Aquifex aeolicus

]

Contig146G

10440893_c2_1087

2239

6365

1536

511

851

4.80E−85

pir:[LN:E70081] [AC:E70081]

[PN:purine-cytosine permease

homolog yxlA] [GN:yxlA]

[OR:

Bacillus subtilis

]

Contig146G

10444091_c1_908

2240

6366

273

90

NO-HIT

Contig146G

1056311_f2_334

2241

6367

483

160

NO-HIT

Contig146G

10567193_f2_456

2242

6368

498

165

544

1.60E−52

gp:[GI:e1172770:g2598550]

[LN:LLAJ109] [AC:AJ000109]

[PN:gluthatione peroxidase]

[GN:gpo] [OR:

Lactococcus lactis

]

[DE:

Lactococcus lactis

carB and

gpo genes.]

Contig146G

1056875_c1_804

2243

6369

1326

441

NO-HIT

Contig146G

1062790_c3_1385

2244

6370

897

298

565

9.80E−55

gp:[GI:g3046324] [LN:AF010139]

[AC:AF010139] [PN:unknown]

[OR:

Azotobacter vinelandii

]

[DE:

Azotobacter vinelandii

iron-

sulfur cluster assembly gene

cluster,suhB, cysE2, iscS, iscU,

iscA, hscB, hscA and fdx genes

completecds; ndk gene, partial

cds.] [NT:orf1]

Contig146G

10660818_c2_1074

2245

6371

1506

501

1757

4.80E−181

pir:[LN:JC2382] [AC:JC2382]

[PN:sodium/proline

symporter:proline permease]

[CL:proline carrier protein]

[OR:

Pseudomonas fluorescens

]

Contig146G

10681555_f3_579

2246

6372

543

180

359

6.60E−33

sp:[LN:YRBI_ECOLI]

[AC:P45396:P45398] [GN:YRBI]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 20.0 KD

PROTEIN IN MURA-RPON

INTERGENIC REGION]

[SP:P45396:P45398]

Contig146G

1070887_f2_296

2247

6373

3894

1297

1730

1.70E−266

sp:[LN:HRPA_ECOLI]

[AC:P43329:P77479:P76861::P768

63] [GN:HRPA]

[OR:

ESCHERICHIA COLI

]

[DE:ATP-DEPENDENT

HELICASE HRPA]

[SP:P43329:P77479:P76861:P768

63]

Contig146G

10741567_c1_889

2248

6374

438

145

NO-HIT

Contig146G

10745927_f1_129

2249

6375

1077

358

848

1.00E−84

gp:[GI:e242881:g2764827]

[LN:ECPAA] [AC:X97452]

[PN:ferredoxin reductase electron

transfer] [GN:E] [OR:

Escherichia

coli

] [DE:

E.coli

cluster for

phenylacetic acid degradation.]

[NT:putative]

Contig146G

10750686_c1_826

2250

6376

540

179

253

1.10E−21

pir:[LN:E70632] [AC:E70632]

[PN:hypothetical protein Rv0390]

[GN:Rv0390] [OR:

Mycobacterium

tuberculosis

]

Contig146G

10750892_c2_1190

2251

6377

243

80

NO-HIT

Contig146G

10801387_f3_578

2252

6378

1029

342

861

4.20E−86

sp:[LN:YRBH_ECOLI]

[AC:P45395] [GN:YRBH]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 35.2 KD

PROTEIN IN MURA-RPON

INTERGENIC REGION (O328)]

[SP:P45395]

Contig146G

10801905_f2_318

2253

6379

486

161

NO-HIT

Contig146G

10824187_f3_654

2254

6380

1170

389

767

3.90E−76

sp:[LN:ACDB_BACSU]

[AC:P45857] [GN:MMGC]

[OR:

BACILLUS SUBTILIS

]

[EC:1.3.99.—] [DE:ACYL-COA

DEHYDROGENASE,]

[SP:P45857]

Contig146G

10970313_f3_511

2255

6381

630

209

129

2.70E−07

sp:[LN:BM3R_BACME]

[AC:P43506] [GN:BM3R1]

[OR:

BACILLUS MEGATERIUM

]

[DE:TRANSCRIPTIONAL

REPRESSOR BM3R1]

[SP:P43506]

Contig146G

10978403_f3_635

2256

6382

795

264

204

3.20E−21

gp:[GI:d1026542:g3059193]

[LN:D88016] [AC:D88016] [PN:2-

hydroxy-6-oxo-6-phenylhexa-2,4-

dienoate] [GN:bphD] [FN:meta-

cleavage compound hydrolase]

[OR:

Rhodococcus erythropolis

]

[SR:

Rhodococcus erythropolis

(strain:TA421) DNA]

[DE:

Rhodococcus erythropolis

DNA for ferredoxin reductase,2,3-

dihydroxybiphnyl 1,2-

dioxygenase,2-hydroxy-6-oxo-6-

phenylhexa-2,4-dieonate

hydrolase, partial andcomplete

cds.]

Contig146G

10979640_f2_256

2257

6383

954

317

1128

2.10E−114

sp:[LN:KDGD_PSEPU]

[AC:P42233]

[OR:

PSEUDOMONAS PUTIDA

]

[EC:4.2.1.41] [DE:GLUCARATE

DEHYDRATASE) (KDGDH)]

[SP:P42233]

Contig146G

111053_c3_1369

2258

6384

246

81

NO-HIT

Contig146G

11178208_c1_1059

2259

6385

1587

528

1930

2.20E−199

sp:[LN:YHAG_ECOLI]

[AC:P39829] [GN:YHAG]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 56.4 KD

[OR:

ESCHERICHIA COLI

]

INTERGENIC REGION]

[SP:P39829]

Contig146G

113217_c2_1162

2260

6386

1200

399

593

1.10E−57

pir:[LN:D69779] [AC:D69779]

[PN:antibiotic resistance protein

homolog ydeR] [GN:ydeR]

[OR:

Bacillus subtilis

]

Contig146G

1172825_f2_372

2261

6387

1002

333

1307

2.30E−133

sp:[LN:PAAA_ECOLI]

[AC:P76077:O53010]

[GN:PAAA] [OR:

ESCHERICHIA

COLI

] [DE:PHENYLACETIC

[GN:PAAA] [OR:

ESCHERICHIA

COLI

] [DE:PHENYLACETIC

[SP:P76077:O53010]

Contig146G

1173135_f3_682

2262

6388

681

226

532

3.10E−51

gp:[GI:g4155694] [LN:AE001537]

[AC:AE001537:AE001439]

[PN:AMINO ACID ABC

TRANSPORTER, PERMEASE

PROTEIN] [GN:jhp1096]

[OR:

Helicobacter pylori

J99]

[DE:

Helicobacter pylori

, strain J99

section 98 of 132 of the

completegenome.] [NT:similar to

H. pylori

26695 gene HP1169]

Contig146G

1188907_c3_1419

2263

6389

657

218

502

4.60E−48

sp:[LN:YFCF_ECOLI]

[AC:P77544] [GN:YFCF]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 24.3 KD

PROTEIN IN PTA-FOLX

INTERGENIC REGION]

[SP:P77544]

Contig146G

119026_f2_365

2264

6390

756

251

153

2.30E−09

sp:[LN:LUMQ_PHOLE]

[AC:Q51872] [GN:LUMQ]

[OR:

PHOTOBACTERIUM

LEIOGNATHI

] [DE:PROBABLE

TRANSCRIPTIONAL

REGULATOR LUMQ]

[SP:Q51872]

Contig146G

11929832_c2_1107

2265

6391

954

317

NO-HIT

Contig146G

11990933_f2_306

2266

6392

201

66

NO-HIT

Contig146G

1204817_f3_609

2267

6393

1371

456

104

6.60E−05

gp:[GI:e1312335:g3341578]

[LN:VCH231091] [AC:AJ231091]

[GN:z29f] [OR:

Vibrio cholerae

]

DE:

Vibrio cholerae

z29f gene.]

Contig146G

1213937_c1_1013

2268

6394

1572

523

1758

3.70E−181

gp:[GI:d1032427:g3298356]

[LN:AB010689] [AC:AB010689]

[PN:AhpF] [GN:ahpF]

[OR:

Pseudomonas putida

]

[SR:

Pseudomonas putida

(strain:TOL) DNA]

[DE:

Pseudomonas putida

gene for

AhpC, AhpF, complete cds.]

Contig146G

1213937_f2_452

2269

6395

1572

523

1750

2.60E−180

gp:[GI:d1032427:g3298356]

[LN:AB010689] [AC:AB010689]

[PN:AhpF] [GN:ahpF]

[OR:

Pseudomonas putida

]

[SR:

Pseudomonas putida

(strain:TOL) DNA]

[DE:

Pseudomonas putida

gene for

AhpC, AhpF, complete cds.]

Contig146G

1223288_f3_620

2270

6396

1386

461

1341

5.80E−137

gp:[GI:e1314375:g3402236]

[LN:SC2A11] [AC:AL031184]

[PN:L-serine dehydratase]

[GN:sdaA] [OR:

Streptomyces

coelicolor

] [DE:

Streptomyces

coelicolor

cosmid 2A11.]

[NT:SC2A11.03c, sdaA, probable

L-serine dehydratase,]

Contig146G

12266002_c1_1032

2271

6397

738

245

566

7.70E−55

sp:[LN:VFR_PSEAE]

[AC:P55222] [GN:VFR]

[OR:

PSEUDOMONAS

AERUGINOSA] [DE:CYCLIC

AMP RECEPTOR-LIKE

PROTEIN] [SP:P55222]

Contig146G

12266505_f3_698

2272

6398

948

315

554

1.40E−53

sp:[LN:GCVA_ECOLI]

[AC:P32064] [GN:GCVA]

[OR:

ESCHERICHIA COLI

]

[DE:ACTIVATOR)] [SP:P32064]

Contig146G

12267308_f2_437

2273

6399

876

291

788

2.30E−78

gp:[GI:D1037194:g4062977]

[LN:AB017138] [AC:AB017138]

[PN:gamma subunit of malonate

decarboxylase] [GN:mdcE]

[OR:

Pseudomonas putida

]

[SR:

Pseudomonas putida

DNA]

[DE:

Pseudomonas putida

malonate

decarboxylase gene cluster (mdcA,

mdcB,mdcC, mdcD, mdcE, mdcG,

mdcH, mdcL and mdcM genes),

complete cds.]

Contig146G

12272012_f1_132

2274

6400

996

331

619

1.90E−60

gp:[GI:g3253210] [LN:AF029714]

[AC:AF029714:Z71175]

[PN:PhaN] [GN:phaN]

[OR:

Pseudomonas putida

]

[DE:

Pseudomonas putida

repressor

(phaN), regulatory protein

(phaM),enoyl-CoA hydratase I

(phaA), enoyl-CoA hydratase II

(phaB),3-hydroxyacyl-CoA

dehydrogenase (phaC),

ketothiolase (phaD),phenylacetyl-

CoA ligase (phaE), ring-oxidation

complex protein 1(pbaF), ring-

oxidation complex protein 2

(phaG), ring-oxidationcomplex

protein 3 (phaH), ring-oxidation

complex protein 4 (phaI),permease

(phaJ), channel-forming protein

(phaK), and ring-openingenzyme

(phaL) genes, complete cds.]

[NT:Repressor protein]

Contig146G

12501467_f2_315

2275

6401

690

229

NO-HIT

Contig146G

12527128_c3_1528

2276

6402

297

98

NO-HIT

Contig146G

1253137_c3_1451

2277

6403

225

74

NO-HIT

Contig146G

12531877_f1_83

2278

6404

960

319

477

2.10E−45

pir:[LN:G65011] [AC:G65011]

[PN:probable lauroyl

acyltransferase b2378:probable

lipid A biosynthesis protein

b2378] [OR:

Escherichia coli

]

Contig146G

125437_f3_669

2279

6405

1449

482

NO-HIT

Contig146G

12585883_c1_862

2280

6406

1590

529

800

1.20E−79

gp:[GI:g3253199] [LN:AF029714]

[AC:AF029714:Z71175]

[PN:PhaC] [GN:phaC]

[OR:

Pseudomonas putida

]

[DE:

Pseudomonas putida

repressor

(phaN), regulatory protein

(phaM),enoyl-CoA hydratase I

(phaA), enoyl-CoA hydratase II

(phaB),3-hydroxyacyl-CoA

dehydrogenase (phaC),

ketothiolase (phaD),phenylacetyl-

CoA ligase (phaE), ring-oxidation

complex protein 1(phaF), ring-

oxidation complex protein 2

(phaG), ring-oxidationcomplex

protein 3 (phaH), ring-oxidation

complex protein 4 (phaI),permease

(phaJ), channel-forming protein

(phaK), and ring-openingenzyme

(phaL) genes, complete cds.]

[NT:3-Hydroxyacyl-CoA

dehydrogenase]

Contig146G

12695967_c2_1223

2281

6407

414

137

NO-HIT

Contig146G

12759591_c1_837

2282

6408

390

129

176

3.20E−12

gp:[GI:g3153821] [LN:AF062655]

[AC:AF062655] [PN:plenty-of-

prolines-101] [OR:

Mus musculus

]

[SR:house mouse] [DE:

Mus

musculus

plenty-of-prolines-101

mRNA, complete cds.] [NT:binds

to several SH3 domain containing

proteins]

Contig146G

12890642_f1_54

2283

6409

606

201

225

1.00E−18

gp:[GI:g3128260] [LN:AF010496]

[AC:AF010496] [PN:hypothetical

protein] [OR:

Rhodobacter

capsulatus

] [DE:

Rhodobacter

capsulatus

strain SB1003, partial

genome.]

Contig146G

13167703_f2_352

2284

6410

1497

498

1608

2.90E−165

gp:[GI:g2708666] [LN:AF037441]

[AC:AF037441] [PN:putative 54.5

kDa protein] [GN:eip55]

[OR:

Edwardsiella ictaluri

]

[DE:

Edwardsiella ictaluri

putative

18.8 kDa protein (eip19),

putative17.8 kDa protein (eip18),

putative 54.5 kDa protein (eip55),

andputative 19.5 kDa protein

(eip20) genes, complete cds.]

[NT:EIP55; antigenic to catfish]

Contig146G

13175308_f2_359

2285

6411

1197

398

771

1.50E−76

sp:[LN:CYNX_ECOLI]

[AC:P17583:P75695:P71308]

[GN:CYNX] [OR:

ESCHERICHIA

COLI] [DE:CYANATE

TRANSPORT PROTEIN CYNX]

[SP:P17583:P75695:P71308]

Contig146G

1345143_f1_5

2286

6412

1281

426

1441

1.50E−147

gp:[GI:g1916298]

[LN:ECU90416] [AC:U90416]

[PN:N-(alpha)-acetylornithine-

(delta)-] [GN:cstC]

[OR:

Escherichia coli

]

[DE:

Escherichia coli

N-(alpha)-

acetylornithine-(delta)-

aminotransferase(cstC) gene,

complete cds.] [NT:CstC; similar

to ArgD]

Contig146G

13672258_f2_445

2287

6413

948

315

765

6.30E−76

sp:[LN:TAUD_ECOLI]

[AC:P37610:Q47540:P77797]

[GN:TAUD:SSID]

[OR:

ESCHERICHIA COLI

]

[EC:1.—.—.—] [DE:STARVATION-

INDUCED PROTEIN 3) (SSI3)]

[SP:P37610:Q47540:P77797]

Contig146G

13694033_c3_1423

2288

6414

768

255

495

2.60E−47

sp:[LN:SDR1_PICAB]

[AC:Q08632] [OR:

PICEA ABIES

]

[SR:,NORWAY SPRUCE:PICEA

EXCELSA] [EC:1.—.—.—]

[DE:SHORT-CHAIN TYPE

DEHYDROGENASE/REDUCTA

SE,] [SP:Q08632]

Contig146G

13724193_f3_707

2289

6415

885

294

774

7.00E−77

gp:[GI:g1657562]

[LN:ECU73857] [AC:U73857]

[PN:membrane component]

[OR:

Escherichia coli

]

[DE:

Escherichia coli

chromosome

minutes 6-8.]

Contig146G

13728406_c3_1460

2290

6416

1281

426

1108

2.80E−112

gp:[GI:g2996619] [LN:AF009224]

[AC:AF009224:M76991:M76990:

M23245:M29848:M29714:M6264

9] [PN:beta-ketoadipyl CoA

thiolase] [GN:catF] [FN:thiolytic

cleavage of beta-ketoadipyl CoA]

[OR:Acinetobacter sp. ADP1]

[DE:Acinetobacter sp. ADP1 ben

operon and cat operon,

completesequence.]

Contig146G

13751966_c1_781

2291

6417

822

273

477

2.10E−45

p:[LN:Y4FC_RHISN]

[AC:P55441] [GN:Y4FC]

[OR:RHIZOBIUM SP] [EC:1.—.

—.—]

[DE:HYPOTHETICAL

MONOOXYGENASE Y4FC,]

[SP:P55441]

Contig146G

1384375_c2_1091

2292

6418

768

255

794

5.30E−79

sp:[LN:YEBC_ECOLI]

[AC:P24237] [GN:YEBC]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 26.4 KD

PROTEIN IN RUVC-ASPS

INTERGENIC REGION]

[SP:P24237]

Contig146G

13866452_f3_539

2293

6419

588

195

179

1.00E−18

pir:[LN:F69979] [AC:F69979]

[PN:caffeoyl-CoA O-

methyltransferase homolog yrrM]

[GN:yrrM] [OR:

Bacillus subtilis

]

Contig146G

13869077_f2_342

2294

6420

1722

573

1598

3.40E−164

pir:[LN:S71009] [AC:S71009]

[PN:biotin carboxylase protein A2]

[GN:bcpA2] [CL:biotin

carboxylase

homology:lipoyl/biotin-binding

homology]

[OR:

Saccharopolyspora erythraea

]

Contig146G

13945268_c2_1113

2295

6421

747

248

585

7.40E−57

sp:[LN:HYUE_PSESP]

[AC:Q00924] [GN:HYUE]

[OR:PSEUDOMONAS SP]

[EC:5.1.99.—] [DE:HYDANTOIN

RACEMASE,] [SP:Q00924]

Contig146G

14220327_c3_1620

2296

6422

1752

583

189

7.60E−15

pir:[LN:JC5087]

[AC:JC5087:PC4226]

[PN:tannase, precursor:tannin acyl

hydrolase] [OR:

Aspergillus

oryzae

] [EC:3.1.1.20]

Contig146G

14273438_c1_1070

2297

6423

453

150

126

4.30E−07

gp:[GI:e1352251:g3892703]

[LN:ATF7K2] [AC:AL033545]

[PN:putative glycine-rich protein]

[GN:F7K2_60] [OR:

Arabidopsis

thaliana

] [SR:thale cress]

[DE:

Arabidopsis thaliana

DNA

chromosome 4, BAC clone F7K2

(ESSAIIproject).] [NT:long ORF

and comparable genepredictions

are also]

Contig146G

14337751_f3_733

2298

6424

1236

411

98

7.20E−05

sp:[LN:INTF_ECOLI]

[AC:P71298] [GN:INTF]

[OR:

ESCHERICHIA COLI

]

[DE:PUTATIVE INTEGRASE

INTF] [SP:P71298]

Contig146G

14351500_c2_1225

2299

6425

552

183

276

4.10E−24

sp:[LN:YDEQ_BACSU]

[AC:P96674] [GN:YDEQ]

[OR:

BACILLUS SUBTILIS

]

[EC:1.6.99.—] [DE:PUTATIVE

NAD(P)H OXIDOREDUCTASE

YDEQ,] [SP:P96674]

Contig146G

1438816_f1_183

2300

6426

1758

585

2365

1.80E−245

gp:[GI:d1037190:g4062973]

[LN:AB017138] [AC:AB017138]

[PN:alpha subunit of malonate

decarboxylase] [GN:mdcA]

[OR:

Pseudomonas putida

]

[SR:

Pseudomonas putida

DNA]

[DE:

Pseudomonas putida

malonate

decarboxylase gene cluster (mdcA,

mdcB,mdcC, mdcD, mdcE, mdcG,

mdcH, mdcL and mdcM genes),

complete cds.]

Contig146G

1442212_c3_1610

2301

6427

891

296

283

7.50E−25

pir:[LN:F69864] [AC:F69864]

[PN:hypothetical protein yktD]

[GN:yktD] [OR:

Bacillus subtilis

]

Contig146G

14485967_f3_636

2302

6428

945

314

329

1.00E−29

gp:[GI:g996073]

[LN:RMNOLNOD] [AC:X91350]

[OR:

Sinorhizobium melitoti

]

[DE:

R.meliloti

nolQa, nolQb, nolS

and nodD2 genes.] [NT:belongs to

stac operon] [RE:

Contig146G

14486025_f2_285

2303

6429

456

151

NO-HIT

Contig146G

14486063_f2_418

2304

6430

1248

415

392

1.70E−35

sp:[LN:VG48_HSVSA]

[AC:Q01033] [GN:48:EDLF5]

[OR:

HERPESVIRUS SAIMIRI

]

[DE:HYPOTHETICAL GENE 48

PROTEIN] [SP:Q01033]

Contig146G

14495312_c2_1280

2305

6431

414

137

270

1.80E−23

gp:[GI:g2995632] [LN:AF052749]

[AC:AF052749] [PN:unknown]

[OR:

Pseudomonas putida

]

[DE:

Pseudomonas putida

plasmid

pPGH1 transposon Tn5502

unknown genes.] [NT:Orf109;

ferredoxin homolog; similar to the]

Contig146G

14580382_f2_403

2306

6432

984

327

419

2.90E−39

gp:[GI:g1139588] [LN:HIU20964]

[AC:U20964] [PN:ORF2]

[OR:

Haemophilus influenzae

]

[DE:

Haemophilus influenzae

DNA

topoisomerase I (topA) gene,

completecds, putative pyridine

nucleotide transhydrogenase beta

subunit(pntB) gene, partial cds,

ORF2 and ORF3 genes, complete

cds andputative threonyl-tRNA

synthetase (thrS) gene, partial cds.]

[NT:ORF2 has a predicted

molecular weight of 34.5kd and]

Contig146G

14584412_f1_137

2307

6433

735

244

114

6.30E−05

gp:[GI:e1312906:g3355680]

[LN:SC1C2] [AC:AL031124]

[PN:putative transcriptional

regulator] [GN:SC1C2.13]

[OR:

Streptomyces coelicolor

]

[DE:

Streptomyces coelicolor

cosmid IC2.] [NT:SC1C2.13,

probable transcriptional regulator,

len:]

Contig146G

1460875_c2_1344

2308

6434

348

115

233

1.50E−19

gp:[GI:g3241975] [LN:SSU85710]

[AC:U85710] [PN:transporase]

[OR:

Sulfolobus solfataricus

]

[DE:

Sulfolobus solfataricus

insertion element ISC1041,

transposasegene, complete cds.]

Contig146G

1460875_f3_750

2309

6435

342

113

233

1.50E−19

gp:[GI:g3241975] [LN:SSU85710]

[AC:U85710] [PN: transposase]

[OR:

Sulfolobus solfataricus

]

[DE:

Sulfolobus solfataricus

insertion element ISC1041,

transposasegene, complete cds.]

Contig146G

14640927_c2_1322

2310

6436

597

198

166

1.90E−12

pir:[LN:G70035] [AC:G70035]

[PN:hypothetical protein yveG]

[GN:yveG] [OR:

Bacillus subtilis

]

Contig146G

14648587_f3_660

2311

6437

1815

604

1414

1.10E−144

gp:[GI:g3172117]

[LN:ACCPCAOP]

[AC:L05770:U04359:M33798:U2

0284:U11554:L13114:L03407]

[PN:acyl-CoA dehydrogenase]

[OR:Acinetobacter sp. ADP1]

[DE:Acinetobacter sp. ADP1 pca-

qui-pob supraoperonic cluster,

completesequence.] [NT:encodes

protein similar to acyl-CoA

dehydrogenase]

Contig146G

14850806_c1_913

2312

6438

249

82

NO-HIT

Contig146G

14875010_f1_195

2313

6439

1398

465

644

4.20E−63

sp:[LN:SOXA_RHOSO]

[AC:P54995] [GN:SOXA:DSZA]

[OR:RHODOCOCCUS SP]

[DE:DIBENZOTHIOPHENE

DESULFURIZATION ENZYME

A] [SP:P54995]

Contig146G

14938787_f1_103

2314

6440

762

253

NO-HIT

Contig146G

14962755_f3_743

2315

6441

1992

663

2418

4.30E−251

sp:[LN:TKT1_ECOLI]

[AC:P27302] [GN:TKTA:TKT]

[OR:

ESCHERICHIA COLI

]

[EC:2.2.1.1]

[DE:TRANSKETOLASE 1, (TK

1)] [SP:P27302]

Contig146G

15051712_c1_867

2316

6442

1164

387

726

8.50E−72

pir:[LN:G69893] [AC:G69893]

[PN:butyryl-CoA dehydrogenase

homolog yngJ] [GN:yngJ]

[CL:acyl-CoA dehydrogenase]

[OR:

Bacillus subtilis

]

Contig146G

15057937_f2_448

2317

6443

771

256

215

1.20E−17

gp:[GI:e1359141:g4007683]

[LN:SC4B5] [AC:AL034443]

[PN:putative transcriptional

regulator] [GN:SC4B5.15]

[OR:

Streptomyces coelicolor

]

[DE:

Streptomyces coelicolor

cosmid 4B5.] [NT:SC4B5.15,

probable transcriptional regulator,

len:]

Contig146G

15094063_f2_328

2318

6444

204

67

NO-HIT

Contig146G

15626552_f3_671

2319

6445

918

305

509

8.40E−49

sp:[LN:YAFC_ECOLI]

[AC:P30864] [GN:YAFC]

[OR:

ESCHERICHIA COLI

]

[DE:(ORF304)] [SP:P30864]

Contig146G

15641561_f2_381

2320

6446

684

227

218

5.80E−18

pir:[LN:S77900]

[AC:S77900:S43551]

[PN:hypothetical protein 1]

[OR:

Clostridium barkeri

]

Contig146G

15683178_f3_569

2321

6447

1077

358

128

7.80E−05

gp:[GI:g189083]

[LN:HUMNC1A] [AC:M96984]

[PN:type VII collagen] [OR:

Homo

sapiens

] [SR:

Homo sapiens

(library: WISH) cDNA to mRNA]

[DE:Human collagen type VII

NC1 region mRNA, partial cds.]

[NT:NC1 region]

Contig146G

15814092_f2_340

2322

6448

777

258

633

6.10E−62

pir:[LN:E71090] [AC:E71090]

[PN:probable lactam utilization

protein] [GN:PH0986]

[OR:

Pyrococcus horikoshii

]

Contig146G

159375_c3_1441

2323

6449

306

101

NO-HIT

Contig146G

16063553_c3_1542

2324

6450

336

111

476

2.60E−45

sp:[LN:FER_PSEST]

[AC:P08811]

[OR:

PSEUDOMONAS

STUTZERI

]

[SR:,

PSEUDOMONAS

PERFECTOMARINA

]

[DE:FERREDOXIN] [SP:P08811]

Contig146G

16188425_f3_704

2325

6451

1260

419

297

1.70E−25

sp:[LN:SOXC_RHOSO]

[AC:P54998] [GN:SOXC:DSZC]

[OR:RHODOCOCCUS SP]

[DE:DIBENZOTHIOPHENE

DESULFURIZATION ENZYME

C (DBT SULFUR

DIOXYGENASE)] [SP:P54998]

Contig146G

16222682_c2_1284

2326

6452

1491

496

2272

1.30E−235

sp:[LN:BENA_ACICA]

[AC:P07769] [GN:BENA]

[OR:

ACINETOBACTER

CALCOACETICUS]

[EC:1.14.12.10] [DE:BENZOATE

1,2-DIOXYGENASE ALPHA

SUBUNIT,] [SP:P07769]

Contig146G

16275311_f1_102

2327

6453

1167

388

1511

5.60E−155

sp:[LN:YBDR_ECOLI]

[AC:P77316] [GN:YBDR]

[OR:

ESCHERICHIA COLI

]

[DE:INTERGENIC REGION]

[SP:P77316]

Contig146G

162816_f2_449

2328

6454

351

116

257

4.30E−22

gp:[GI:g3095050] [LN:AF010234]

[AC:AF010234] [PN:ArsR]

[GN:arsR] [OR:

Pseudomonas

aeruginosa

] [DE:

Pseudomonas

aeruginosa

ars operon, regulator

(arsR), membrane pump(arsB) and

arsenate reductase (arsC) genes,

complete cds.] [NT:regulator]

Contig146G

163405_c1_793

2329

6455

2025

674

NO-HIT

Contig146G

16416056_c1_998

2330

6456

297

98

NO-HIT

Contig146G

16439077_c3_1452

2331

6457

3483

1160

197

7.90E−19

pir:[LN:G69114] [AC:G69114]

[PN:indolepyruvate

oxidoreductase, alpha subunit]

[GN:MTH1852]

[CL:indolepyruvate synthase alpha

chain] [OR:

Methanobacterium

thermoautotrophicum

]

Contig146G

16440937_f3_599

2332

6458

690

229

110

0.00011

pir:[LN:B70391] [AC:B70391]

[PN:transcription regulator

TetR/AcrR family] [GN:acrR1]

[OR:

Aquifex aeolicus

]

Contig146G

165813_c2_1330

2333

6459

915

304

315

3.00E−28

pir:[LN:B71256] [AC:B71256]

[PN:conserved hypothetical

integral membrane protein

TP0986] [GN:TP0986]

[OR:

Treponema pallidum

subsp.

pallidum

] [SR:, syphilis

spirochete]

Contig146G

166087_c2_1294

2334

6460

186

61

NO-HIT

Contig146G

16828465_c2_1167

2335

6461

1257

418

1918

4.10E−198

gp:[GI:g1842056]

[LN:ACU87258] [AC:U87258]

[PN:cis,cis-muconate transport

protein MucK] [GN:mucK]

[OR:Acinetobacter sp. ADP1]

[DE:Acinetobacter sp. ADP1

cis,cis-muconate transport protein

MucK(mucK) and electron transfer

flavoprotein-ubiquinone

oxidoreductasehomolog genes,

complete cds.]

Contig146G

16979688_c3_1384

2336

6462

1125

374

1489

1.20E−152

sp:[LN:ASPQ_ACIGL]

[AC:P10172]

[OR:

ACINETOBACTER

GLUTAMINASIFICANS

]

[EC:3.5.1.38]

[DE:GLUTAMINASE-

ASPARAGINASE,] [SP:P10172]

Contig146G

17001515_f2_280

2337

6463

1335

444

1522

3.80E−156

sp:[LN:PURA_VIBPA]

[AC:P40607] [GN:PURA]

[OR:

VIBRIO

PARAHAEMOLYTICUS

]

[EC:6.3.4.4]

[DE:ADENYLOSUCCINATE

SYNTHETASE, (IMP--

ASPARTATE LIGASE)]

[SP:P40607]

Contig146G

17008442_f2_327

2338

6464

858

285

383

1.90E−35

gp:[GI:e321555:g2208981]

[LN:YEY13308] [AC:Y13308]

[PN:hypothetical protein]

[OR:

Yersinia enterocolitica

]

[DE:

Yersinia enterocolitica

plasmid DNA fragment, strain

15673.] [T:ORF2]

Contig146G

17069691_f1_147

2339

6465

1728

575

492

5.30E−47

gp:[GI:g1477454]

[LN:APU04954] [AC:U04954]

[GN:afuB] [OR:

Actinobacillus

pleuropneumoniae

]

[DE:

Actinobacillus

pleuropneumoniae

afuA, afuB,

afuC, apxIC and RTX-1toxin

determinant (apxIA) genes,

complete cds.]

Contig146G

188752_f2_283

2340

6466

450

149

446

4.00E−42

gp:[GI:g1888564]

[LN:PAU89892] [AC:U89892]

[OR:

Pseudomonas aeruginosa

]

[DE:

Pseudomonas aeruginosa

virulence factor regulator (vfr)

gene,partial cds.] [NT:ORFX]

Contig146G

188805_f3_487

2341

6467

1527

508

1413

1.40E−144

sp:[LN:CYCA_ECOLI]

[AC:P39312] [GN:CYCA:DAGA]

[OR:

ESCHERICHIA COLI

]

[DE:D-SERINE/D-

ALANINE/GLYCINE

TRANSPORTER] [SP:P39312]

Contig146G

189012_c3_1619

2342

6468

435

144

109

2.10E−06

pir:[LN:S74052] [AC:S74052]

[PN:hypothetical protein c0116]

[OR:

Sulfolobus solfataricus

]

Contig146G

189062_c2_1100

2343

6469

1236

411

1098

3.20E−111

sp:[LN:PURT_ECOLI]

[AC:P33221] [GN:PURT]

[OR:

ESCHERICHIA COLI

]

[EC:2.1.2.—] [DE:2)(FORMATE-

DEPENDENT GAR

TRANSFORMYLASE)]

[SP:P33221]

Contig146G

194137_f3_565

2344

6470

201

66

NO-HIT

Contig146G

1953193_c2_1135

2345

6471

669

222

158

1.30E−11

sp:[LN:YEAS_ECOLI]

[AC:P76249:O07971:O07969]

[GN:YEAS] [OR:

ESCHERICHIA

COLI] [DE:HYPOTHETICAL

23.2 KD PROTEIN IN GAPA-

RND INTERGENIC REGION]

[SP:P76249:O07971:O07969]

Contig146G

19542177_f1_231

2346

6472

573

190

133

2.40E−11

sp:[LN:FXSA_ECOLI]

[AC:P37147] [GN:FXSA]

[OR:

ESCHERICHIA COLI

]

[DE:FXSA PROTEIN]

[SP:P37147]

Contig146G

19568813_c3_1593

2347

6473

852

283

292

8.30E−26

gp:[GI:d1002964:g217121]

[LN:SYOCPCB] [AC:D13173]

[PN:ORF1] [OR:

Synechococcus

elongatus

] [SR:

Synechococcus

elongatus

DNA]

[DE:

Synechococcus elongatus

phycocyanin genes.]

Contig146G

195927_c3_1609

2348

6474

1551

516

912

1.70E−91

pir:[LN:D70861] [AC:D70861]

[PN:probable monoxygenase]

[GN:Rv3049c]

[OR:

Mycobacterium tuberculosis

]

Contig146G

19610941_f3_488

2349

6475

318

105

NO-HIT

Contig146G

19640842_f1_180

2350

6476

750

249

388

5.60E−36

sp:[LN:YWBG_BACSU]

[AC:P39590] [GN:YWBG:IPA-

22R] [OR:

BACILLUS SUBTILIS

]

[DE:HYPOTHETICAL 25.8 KD

PROTEIN IN EPR-GALK

INTERGENIC REGION]

[SP:P39590]

Contig146G

19688392_f2_336

2351

6477

318

105

NO-HIT

Contig146G

19688953_f2_399

2352

6478

711

236

815

3.20E−81

pir:[LN:B44570] [AC:B44570]

[PN:3-oxoadipate CoA-transferase,

beta chain] [GN:catJ] [CL:3-

oxoadipate CoA-transferase beta

chain:3-oxoadipate CoA-

transferase beta chain homology]

[OR:

Acinetobacter calcoaceticus

]

[EC:2.8.3.6]

Contig146G

19725053_f3_607

2353

6479

2712

903

753

6.10E−150

pir:[LN:S76431] [AC:S76431]

[PN:ATP-dependent Clp

proteinase, regulatory chain

B2:protein slr0156:protein

slr0156] [GN:clpB2] [CL:ATP-

dependent Clp proteinase chain A]

[OR:Synechocystis sp.] [SR:PCC

6803,, PCC 6803] [SR:PCC 6803,]

[EC:3.4.21.—]

Contig146G

19726457_f3_639

2354

6480

1215

404

NO-HIT

Contig146G

19727313_f1_35

2355

6481

1059

352

801

9.60E−80

sp:[LN:ADA_YEAST]

[AC:P53909]

[GN:YNL141W:N1208:N1825]

[OR:

SACCHAROMYCES

CEREVISIAE

] [SR:,BAKER'S

YEAST] [EC:3.5.4.4]

[DE:PROBABLE ADENOSINE

DEAMINASE, (ADENOSINE

AMINOHYDROLASE)]

[SP:P53909]

Contig146G

19739576_c1_835

2356

6482

192

63

NO-HIT

Contig146G

1980166_c1_1069

2357

6483

1389

462

1415

8.30E−145

pir:[LN:QRECAA]

[AC:H64733:JS0447:S10720:S451

91] [PN:aromatic amino acid

transport protein aroP] [GN:aroP]

[CL:arginine permease]

[OR:

Escherichia coli

] [MP:2.6

min]

Contig146G

19820302_f3_489

2358

6484

462

153

NO-HIT

Contig146G

198582_c2_1313

2359

6485

867

288

636

2.90E−62

pir:[LN:A70853] [AC:A70853]

[PN:hypothetical protein Rv3085]

[GN:Rv3085] [OR:

Mycobacterium

tuberculosis

]

Contig146G

19925212_c3_1515

2360

6486

270

89

NO-HIT

Contig146G

1992937_f2_436

2361

6487

315

104

353

2.90E−32

gp:[GI:d1037192:g4062975]

[LN:AB017138] [AC:AB017138]

[PN:delta subunit of malonate

decarboxylase] [GN:mdcC]

[OR:

Pseudomonas putida

]

[SR:

Pseudomonas putida

DNA]

[DE:

Pseudomonas putida

malonate

decarboxylase gene cluster (mdcA,

mdcB,mdcC, mdcD, mdcE, mdcG,

mdcH, mdcL, and mdcM genes),

complete cds.] [NT:acyl carrier

protein]

Contig146G

20003183_c3_1635

2362

6488

1530

509

542

2.70E−52

sp:[LN:ORDL_ECOLI]

[AC:P37906] [GN:ORDL]

[OR:

ESCHERICHIA COLI

]

[EC:1.—.—.—] [DE:PROBABLE

OXIDOREDUCATASE ORDL,]

[SP:P37906]

Contig146G

20026410_c3_1465

2363

6489

189

62

NO-HIT

Contig146G

20134703_f2_375

2364

6490

795

264

862

3.30E−86

gp:[GI:g3253198] [LN:AF029714]

[AC:AF029714:Z71175]

[PN:PhaB] [GN:phaB]

[OR:

Pseudomonas putida

]

[DE:

Pseudomonas putida

repressor

(phaN), regulatory protein

(phaM),enoyl-CoA hydratase I

(phaA), enoyl-CoA hydratase II

(phaB),3-hydroxyacyl-CoA

dehydrogenase (phaC),

ketothiolase (phaD),phenylacetyl-

CoA ligase (phaE), ring-oxidation

complex protein 1(phaF), ring-

oxidation complex protein 2

(phaG), ring-oxidationcomplex

protein 3 (phaH), ring-oxidation

complex protein 4 (phaI),permease

(phaJ), channel-forming protein

(phaK), and ring-openingenzyme

(phaL) genes, complete cds.]

[NT:Enoyl-CoA hydratase II]

Contig146G

20197127_f3_667

2365

6491

621

206

155

2.70E−11

pir:[LN:F69985] [AC:F69985]

[PN:transcription regulator

TetR/AcrR family homolog ysiA]

[GN:ysiA] [OR:

Bacillus subtilis

]

Contig146G

20204213_f1_153

2366

6492

1005

334

415

2.20E−46

pir:[LN:B70678] [AC:B70678]

[PN:hypothetical protein Rv3553]

[GN:Rv3553] [OR:

Mycobacterium

tuberculosis

]

Contig146G

20320125_c3_1365

2367

6493

582

193

139

1.30E−11

pir:[LN:F70025] [AC:F70025]

[PN:conserved hypothetical

protein yuxN] [GN:yuxN]

[OR:

Bacillus subtilis

]

Contig146G

2032212_f3_573

2368

6494

195

64

NO-HIT

Contig146G

20323376_c2_1278

2369

6495

714

237

257

4.30E−22

sp:[LN:RPC1_BPD3]

[AC:Q37906] [GN:CI]

[OR:BACTERIOPHAGE D3]

[DE:REPRESSOR PROTEIN CI]

[SP:Q37906]

Contig146G

20407667_c2_1249

2370

6496

471

156

382

2.40E−35

gp:[GI:g1209222] [LN:ACCEST]

[AC:L38252] [OR:

Acinetobacter

lwoffii

] [DE:

Acinetobacter lwoffii

orf1 and esterase (est) genes,

complete cds.] [NT:orf1]

Contig146G

20422087_f1_98

2371

6497

960

319

241

2.10E−20

gp:[GI:e1331981:g4106612]

[LN:YP102KB] [AC:AL031866]

[OR:

Yersinia pestis

] [DE:

Yersinia

pestis

102 kbases unstable region:

from 1 to 119443.] [NT:ORF44,

len=320, similar to hypothetical]

Contig146G

20492057_f3_614

2372

6498

1179

392

452

9.20E−43

sp:[LN:YCAQ_ECOLI]

[AC:P75843] [GN:YCAQ]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 47.7 KD

PROTEIN IN MSBA-KDSB

INTERGENIC REGION]

[SP:P75843]

Contig146G

20500012_f1_39

2373

6499

1110

369

123

0.00063

gp:[GI:c1325381:g3649757]

[LN:PFMAL3P3]

[AC:Z98547:Z98548:Z98550]

[GN:MAL3P3.5] [OR:

Plasmodium

falciparum

] [SR:malaria parasite

P.

falciparum

] [DE:

Plasmodium

falciparum

MAL3P3, complete

sequence.] [NT:predicted using

hexExon; MAL3P3.5

(PFC0345w),]

Contig146G

20500182_c3_1433

2374

6500

285

94

NO-HIT

Contig146G

20507057_c1_1023

2375

6501

2265

754

1328

1.40E−135

sp:[LN:YCBY_HAEIN]

[AC:P44524:P43945]

[GN:HI0116/115]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

HI0116/115] [SP:P44524:P43945]

Contig146G

20507152_f2_390

2376

6502

354

117

359

6.60E−33

gp:[GI:g2290999] [LN:AF006000]

[AC:AF006000] [PN:unknown]

[OR:

Bordetella pertussis

]

[DE:

Bordetella pertussis

D-3-

phosphoglycerate dehydrogenase

homolog(serA) and Brg1 (brg1)

genes, complete cds.] [NT:orf1;

similar to Eubacterium BaiF] [RE:

Contig146G

20938818_c2_1205

2377

6503

1302

433

772

1.10E−76

sp:[LN:YHJE_ECOLI]

[AC:P37643] [GN:YHJE]

[OR:

ESCHERICHIA COLI

]

[DE:REGION (O440)]

[SP:P37643]

Contig146G

20939132_f1_138

2378

6504

678

225

NO-HIT

Contig146G

20968826_f2_257

2379

6505

1611

536

1288

2.40E−131

pir:[LN:S27612] [AC:S27612]

[PN:ketoglutarate semialdehyde

dehydrogenase,]

[OR:

Pseudomonas putida

]

[EC:1.2.1.—]

Contig146G

210762_c1_839

2380

6506

453

150

NO-HIT

Contig146G

2135952_c3_1381

2381

6507

1227

408

947

3.20E−95

gp:[GI:e1374011:g4210608]

[LN:BPE9834] [AC:AJ009834]

[PN:DapC] [GN:dapC]

[FN:succinyldiaminopimelate

transaminase] [OR:

Bordetella

pertussis

] [EC:2.6.1.17]

[DE:

Bordetella pertussis

diaminopimelic acid biosynthesis

locusincluding dapC, dapD, and

dapE genes, partial.]

Contig146G

21502178_c2_1081

2382

6508

558

185

474

4.30E−45

sp:[LN:RUVC_HAEIN]

[AC:P44633] [GN:RUVC:HI0314]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:3.1.22.4]

[DE:JUNCTION NUCLEASE

RUVC) (HOLLIDAY JUCTION

RESOLVASE RUVC)]

[SP:P44633]

Contig146G

21523467_f3_747

2383

6509

501

166

400

3.00E−37

gp:[GI:g1816639] [LN:BJU85623]

[AC:U85623] [PN:leucine-

responsive regulatory protein]

[GN:lrp] [FN:transcription

regulator] [OR:

Bradyrhizobium

japonicum

] [DE:

Bradyrhizobium

japonicum

leucine-responsive

regulatory protein(lrp) gene,

complete cds.] [NT:LRP]

Contig146G

21533583_c1_929

2384

6510

915

304

614

6.30E−60

sp:[LN:Y412_METJA]

[AC:Q57855] [GN:MJ0412]

[OR:

METHANOCOCCUS

JANNASCHII

]

[DE:HYPOTHETICAL ABC

TRANSPORTER ATP-BINDING

PROTEIN MJ0412] [SP:Q57855]

Contig146G

21566686_c3_1600

2385

6511

1317

438

1008

1.10E−101

pir:[LN:B70399] [AC:B70399]

[PN:aspartokinase] [GN:lysC]

[CL:aspartate kinase:aspartate

kinase homology] [OR:

Aquifex

aeolicus

]

Contig146G

21569075_f1_170

2386

6512

1437

478

NO-HIT

Contig146G

21675035_c1_827

2387

6513

960

319

781

1.30E−77

sp:[LN:SRPH_SYNP7]

[AC:Q59967] [GN:SRPH]

[OR:SYNECHOCOCCUS SP]

[SR:PCC 7942,ANACYSTIS

NIDULANS R2] [EC:2.3.1.30]

[DE:SERINE

ACETYLTRANSFERASE,

PLASMID, (SAT)] [SP:Q59967]

Contig146G

21683402_f3_527

2388

6514

339

112

NO-HIT

Contig146G

21692188_f2_364

2389

6515

996

331

NO-HIT

Contig146G

21697193_f2_289

2390

6516

1248

415

746

6.50E−74

sp:[LN:PYR2_PSEAE]

[AC:Q51551] [GN:PYRC′:PYRX]

[OR:

PSEUDOMONAS

AERUGINOSA

]

[DE:CATALYTIC CHAIN)]

[SP:Q51551]

Contig146G

21723425_f1_146

2391

6517

1101

366

420

2.30E−39

sp:[LN:Y131_HAEIN]

[AC:P43951] [GN:HI0131]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

HI0131 PRECURSOR]

[SP:P43951]

Contig146G

21754086_c1_940

2392

6518

195

64

NO-HIT

Contig146G

21876040_c3_1616

2393

6519

1902

633

197

1.60E−19

sp:[LN:LCFH_HAEIN]

[AC:P44446] [GN:HI0002]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:6.2.1.3]

[DE:ACYL-COA SYNTHETASE)

(LACS)] [SP:P44446]

Contig146G

21876500_f3_612

2394

6520

747

248

367

9.40E−34

sp:[LN:YAHD_ECOLI]

[AC:P77736] [GN:YAHD]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 21.7 KD

PROTEIN IN BETT-PRPR

INTERGENIC REGION]

[SP:P77736]

Contig146G

21882762_c1_861

2395

6521

855

284

592

1.30E−57

gp:[GI:g3253197] [LN:AF029714]

[AC:AF029714:Z71175]

[PN:PhaA] [GN:phaA]

[OR:

Pseudomonas putida

]

[DE:

Pseudomonas putida

repressor

(phaN), regulatory protein

(phaM),enoyl-CoA hydratase I

(phaA), enoyl-CoA hydratase II

(phaB),3-hydroxyacyl-CoA

dehydrogenase (phaC),

ketothiolase (phaD),phenylacetyl-

CoA ligase (phaE), ring-oxidation

complex protein 1(phaF), ring-

oxidation complex protein 2

(phaG), ring-oxidationcomplex

protein 3 (phaH), ring-oxidation

complex protein 4 (phaI),permease

(phaJ), channel-forming protein

(phaK), and ring-openingenzyme

(phaL) genes, complete cds.]

[NT:Enoyl-CoA hydratase I]

Contig146G

21911263_f1_234

2396

6522

216

71

NO-HIT

Contig146G

21915633_f2_475

2397

6523

1563

520

610

1.70E−59

sp:[LN:YJEF_ECOLI]

[AC:P31806] [GN:YJEF]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 54.7 KD

PROTEIN IN PSD-AMIB

INTERGENIC REGION (URF1)]

[SP:P31806]

Contig146G

22032692_c3_1529

2398

6524

228

75

NO-HIT

Contig146G

22292627_c3_1378

2399

6525

801

266

592

1.30E−57

sp:[LN:YGAZ

—

ECOLI]

[AC:P76630] [GN:YGAZ]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 26.1 KD

PROTEIN IN PROX-MPRA

INTERGENIC REGION]

[SP:P76630]

Contig146G

22345087_f3_515

2400

6526

294

97

NO-HIT

Contig146G

22460031_c2_1286

2401

6527

1335

444

395

1.00E−36

gp:[GI:g3253207] [LN:AF029714]

[AC:AF029714:Z71175]

[PN:PhaK] [GN:phaK]

[OR:

Pseudomonas putida

]

[DE:

Pseudomonas putida

repressor

(phaN), regulatory protein

(phaM),enoyl-CoA hydratase I

(phaA), enoyl-CoA hydratase II

(phaB),3-hydroxyacyl-CoA

dehydrogenase (phaC),

ketothiolase (phaD),phenylacetyl-

CoA ligase (phaE), ring-oxidation

complex protein 1(phaF), ring-

oxidation complex protein 2

(phaG), ring-oxidationcomplex

protein 3 (phaH), ring-oxidation

complex protein 4 (phaI),permease

(phaJ), channel-forming protein

(phaK), and ring-openingenzyme

(phaL) genes, complete cds.]

[NT:Channel-forming protein]

Contig146G

22663961_c3_1374

2402

6528

690

229

509

8.40E−49

sp:[LN:YAEE_ECOLI]

[AC:P31547] [GN:YAEE]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL ABC

TRANSPORTER PERMEASE

PROTEIN YAEE] [SP:P31547]

Contig146G

22687837_f3_734

2403

6529

444

147

NO-HIT

Contig146G

22699052_c2_1146

2404

6530

1617

538

1839

9.70E−190

pir:[LN:F70550] [AC:F70550]

[PN:probable accD1 protein]

[GN:accD1] [CL:propionyl-CoA

carboxylase beta chain]

[OR:

Mycobacterium tuberculosis

]

Contig146G

22710457_f3_700

2405

6531

999

332

957

2.80E−96

gp:[GI:d1037193:g4062976]

[LN:AB017138] [AC:AB017138]

[PN:beta subunit of malonate

decarboxylase] [GN:mdcD]

[OR:

Pseudomonas putida

]

[SR:

Pseudomonas putida

DNA]

[DE:

Pseudomonas putida

malonate

decarboxylase gene cluster (mdcA,

mdcB,mdcC, mdcD, mdcE, mdcG,

mdcH, mdcL and mdcM genes),

complete cds.]

Contig146G

22837801_f1_79

2406

6532

195

64

195

1.60E−15

pir:[LN:A48362]

[AC:A48362:S24623]

[PN:hypothetical protein 280

(rpoN 5′ region)] [CL:unassigned

ATP-binding cassette

proteins:ATP-binding cassette

homology] [OR:

Alcaligenes

eutrophus

]

Contig146G

22837832_c3_1462

2407

6533

813

270

377

8.20E−35

gp:[GI:e242883:g2764829]

[LN:ECPAA] [AC:X97452]

[PN:enoyl-CoA isomerase]

[GN:G] [OR:

Escherichia coli

]

[DE:

E.coli

cluster for phenylacetic

acid degradation.] [NT:putative]

[SP:P77467]

Contig146G

22897915_f2_323

2408

6534

570

189

654

3.60E−64

gp:[GI:g2317737] [LN:AF013987]

[AC:AF013987] [PN:putative

ABC transporter ATP-binding

protein] [OR:

Vibrio cholerae

]

[DE:

Vibrio cholerae

strain 0395

putative ABC transporter ATP-

bindingprotein, sigma54 (rpoN),

putative sigma54 modulation

protein andnitrogen regulatory IIA

protein (ptsN) genes, complete

cds.]

Contig146G

22898593_f1_128

2409

6535

768

255

686

1.50E−67

sp:[LN:PAAC_ECOLI]

[AC:P76079:O53011] [GN:PAAC]

[OR:

ESCHERICHIA COLI

]

[DE:PHENYLACETIC ACID

DEGRADATION PROTEIN

PAAC] [SP:P76079:O53011]

Contig146G

23437893_f2_337

2410

6536

456

151

NO-HIT

Contig146G

23438950_c1_999

2411

6537

1251

416

625

4.30E−61

pir:[LN:B65048] [AC:B65048]

[PN:hypothetical protein b2681]

[OR:

Escherichia coli

]

Contig146G

23444053_f2_415

2412

6538

243

80

NO-HIT

Contig146G

23445902_c1_755

2413

6539

738

245

548

6.20E−53

gp:[GI:g4155790] [LN:AE001545]

[AC:AE001545:AE001439]

[PN:putative] [GN:jhp1180]

[OR:

Helicobacter pylori

J99]

[DE:

Helicobacter pylori

, strain J99

section 106 of 132 of the

completegenome.] [NT:similar to

H. pylori

26695 gene HP1259]

Contig146G

23447187_c3_555

2414

6540

732

243

NO-HIT

Contig146G

23469000_c3_1368

2415

6541

237

78

NO-HIT

Contig146G

23477192_f3_596

2416

6542

1608

535

463

6.30E−44

gp:[GI:g2290992] [LN:AF006000]

[AC:AF006000] [PN:unknown]

[OR:

Bordetella pertussis

]

[DE:

Bordetella pertussis

D-3-

phosphoglycerate dehydrogenase

homolog(serA) and Brg1 (brg1)

genes, complete cds.] [NT:orf8;

similar to

S. cerevisiae

urea

amidolyase]

Contig146G

23494028_c1_752

2417

6543

540

179

292

8.30E−26

sp:[LN:YAIL_ECOLI]

[AC:P51024:P77803] [GN:YAIL]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 19.9 KD

PROTEIN IN MHPT-ADHC

INTERGENIC REGION]

[SP:P51024:P77803]

Contig146G

23494037_c2_1076

2418

6544

411

136

96

0.00014

pir:[LN:F69883] [AC:F69883]

[PN:conserved hypothetical

protein ymaD] [GN:ymaD]

[OR:

Bacillus subtilis

]

Contig146G

23525250_f1_59

2419

6545

219

72

233

1.50E−19

gp:[GI:e1352158:g3892590]

[LN:LLY17217] [AC:Y17217]

[PN:cold shock protein E]

[GN:cspE] [OR:

Lactococcus

lactis] [DE:

Lactococcus lactis

cspE gene.]

Contig146G

23535681_c1_797

2420

6546

924

307

467

2.40E−44

gp:[GI:e1331986:g4106617]

[LN:YP102KB] [AC:AL031866]

[OR:

Yersinia pestis

] [DE:

Yersinia

pestis

102 kbases unstable region:

from 1 to 119443.] [NT:ORF49,

len= 294, propable transcriptional]

Contig146G

23541537_c1_961

2421

6547

1059

352

284

5.90E−25

sp:[LN:ALBR_KLEOX]

[AC:P10488] [OR:

KLEBSIELLA

OXYTOCA

] [DE:ALBICIDIN

RESISTANCE PROTEIN]

[SP:P10488]

Contig146G

235427_f3_712

2422

6548

189

62

NO-HIT

Contig146G

23572187_c3_1631

2423

6549

1434

477

1587

4.90E−163

gp:[GI:e1310884:g3319729]

[LN:SC6A9] [AC:AL031035]

[PN:aldehyde dehydrogenase]

[GN:SC6A9.10c]

[OR:

Streptomyces coelicolor

]

[DE:

Streptomyces coelicolor

cosmid 6A9.] [NT:SC6A9.10c,

probable aldehyde dehydrogenase,

len:]

Contig146G

23595201_c3_1483

2424

6550

1227

408

206

1.10E−13

gp:[GI:g4106928] [LN:AF114794]

[AC:AF114794] [PN:orf544]

[GN:orf544] [OR:Mitochondrion

Porphyra purpurea

] [SR:

Porphyra

purpurea

] [DE:

Porphyra purpurea

mitochondrion, complete genome.]

[NT:Related to reverse

transcriptases; Orf inside an]

Contig146G

23612917_c2_1137

2425

6551

1020

339

540

4.40E−52

sp:[LN:HRPX_PLALO]

[AC:P04929]

[OR:

PLASMODIUM

LOPHURAE

] [DE:HISTIDINE-

RICH GLYCOPROTEIN

PRECURSOR] [SP:P04929]

Contig146G

23625202_f1_134

2426

6552

789

262

NO-HIT

Contig146G

23625827_f3_492

2427

6553

1071

356

448

2.50E−42

gp:[GI:g1657970]

[LN:PAU73506] [AC:U73506]

[PN:OruR] [GN:oruR]

[OR:

Pseudomonas aeruginosa

]

[DE:

Pseudomonas aeruginosa

ornithine utilization regulatory

(oruR)gene, complete cds.]

[NT:regulatory locus for ornithine

utilization]

Contig146G

23626412_c3_1459

2428

6554

786

261

352

3.70E−32

gp:[GI:g510725] [LN:STMPKSO]

[AC:L33245] [PN:ketoreductase]

[OR:

Streptomyces venezuelae

]

[DE:

Streptomyces venezuelae

polyketide synthase genes, five

completecds.] [NT:putative]

Contig146G

23632012_c3_1425

2429

6555

951

316

819

1.20E−81

sp:[LN:LTRA_KLEPN]

[AC:P52689] [GN:LTRA]

[OR:

KLEBSIELLA

PNEUMONIAE

]

[DE:PROBABLE

TRANSCRIPTIONAL

REGULATOR LTRA]

[SP:P52689]

Contig146G

23634692_f2_379

2430

6556

1068

355

462

8.10E−44

sp:[LN:SRPA_SYNP7]

[AC:Q55025] [GN:SRPA]

[OR:SYNECHOCOCCUS SP]

[SR:PCC 7942,ANACYSTIS

NIDULANS R2] [DE:SRPA

PROTEIN PRECURSOR]

[SP:Q55025]

Contig146G

23644025_c3_1392

2431

6557

447

148

502

4.60E−48

gp:[GI:d1025746:g2879921]

[LN:AB004659] [AC:AB004659]

[PN:ArsC] [GN:arsC]

[OR:

Acidiphilium multivorum

]

[SR:

Acidiphilium multivorum

(strain:AIU 301) plasmid:pKW301

DNA] [DE:

Acidiphilium

multivorum

plasmid pKW301 gene

for ArsR, ArsD, ArsA,ArsB, ArsC,

complete cds.] [NT:reduces

arsenate(As+5) to arsenite(As3+);

converts]

Contig146G

23710933_c2_1072

2432

6558

468

155

188

8.70E−15

gp:[GI:e1237897:g2791988]

[LN:SAMECARII] [AC:Y14051]

[PN:hypothetical protein]

[OR:

Staphylococcus aureus

]

[DE:

Staphylococcus aureus

mecA,

mecR1, mecI genes and ORF168,

ORF142,ORF44, ORF145 and

ORF224.] [NT:ORF142]

Contig146G

23832801_c3_1355

2433

6559

855

284

390

3.40E−36

sp:[LN:BLP2_PSEAE]

[AC:P14489] [GN:PSE2:OXA10]

[OR:

PSEUDOMONAS

AERUGINOSA

] [EC:3.5.2.6]

[DE:BETA-LACTAMASE PSE-2

PRECURSOR, (BETA

LACTAMASE OXA-10)]

[SP:P14489]

Contig146G

23835012_f1_101

2434

6560

738

245

381

3.10E−35

sp:[LN:YBEQ_ECOLI]

[AC:P77234] [GN:YBEQ]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 37.3 KD

PROTEIN IN LEUS-GLTL

INTERGENIC REGION]

[SP:P77234]

Contig146G

23847658_c2_1279

2435

6561

1398

465

233

6.90E−17

pir:[LN:C64552] [AC:C64552]

[PN:exonuclease VII, large

subunit] [OR:

Helicobacter pylori

]

Contig146G

23866261_c3_1360

2436

6562

1080

359

395

1.00E−36

sp:[LN:MRKD_KLEPN]

[AC:P21648] [GN:MRKD]

[OR:

KLEBSIELLA

PNEUMONIAE

] [DE:FIMBRIA

ADHESIN PROTEIN

PRECURSOR] [SP:P21648]

Contig146G

23870462_c1_1064

2437

6563

783

260

159

1.40E−11

gp:[GI:g2384695] [LN:AF013216]

[AC:AF013216:U81372]

[PN:unknown] [OR:

Myxococcus

xanthus

] [DE:

Myxococcus

xanthus

Dog (dog), isocitrate lyase

(icl), Mls (mls),Ufo (ufo), fumarate

hydratase (fhy), and proteosome

major subunit(clpP) genes,

complete cds; and acyl-CoA

oxidase (aco) gene,partial cds.]

Contig146G

23883555_f1_131

2438

6564

1221

406

1376

1.10E−140

gp:[GI:g3253200] [LN:AF029714]

[AC:AF029714:Z71175]

[PN:PhaD] [GN:phaD]

[OR:

Pseudomonas putida

]

[DE:

Pseudomonas putida

repressor

(phaN), regulatory protein

(phaM),enoyl-CoA hydratase I

(phaA), enoyl-CoA hydratase II

(phaB),3-hydroxyacyl-CoA

dehydrogenase (phaC),

ketothiolase (phaD),phenylacetyl-

CoA ligase (phaE), ring-oxidation

complex protein 1(phaF), ring-

oxidation complex protein 2

(phaG), ring-oxidationcomplex

protein 3 (phaH), ring-oxidation

complex protein 4 (phaI),permease

(phaJ), channel-forming protein

(phaK), and ring-openingenzyme

(phaL) genes, complete cds.]

[NT:Ketothiolase]

Contig146G

23947162_f3_713

2439

6565

1038

345

1144

4.30E−116

pir:[LN:E69220] [AC:E69220]

[PN:conserved hypothetical

protein MTH900] [GN:MTH900]

[CL:conserved hypothetical

protein MTH900]

[OR:

Methanobacterium

thermoautotrophicum

]

Contig146G

24039030_f2_273

2440

6566

1032

343

181

1.50E−11

pir:[LN:H70882] [AC:H70882]

[PN:hypothetical protein Rv2777c]

[GN:Rv2777cp]

[OR:

Mycobacterium tuberculosis

]

Contig146G

24052_f1_175

2441

6567

900

299

812

6.60E−81

gp:[GI:g1930092] [LN:CJU93169]

[AC:U93169] [PN:outer membrane

protein] [GN:ompH1]

[OR:

Campylobacter jejuni

]

[DE:

Campylobacter jejuni

outer

membrane protein (ompH1) gene,

completecds.] [NT:glutamine

binding protein analog]

Contig146G

24085342_f3_668

2442

6568

684

227

192

3.30E−15

gp:[GI:d1039056:g4512353]

[LN:AB011836] [AC:AB011836]

[GN:ycgJ] [OR:

Bacillus

halodurans

] [SR:

Bacillus

halodurans

(strain:C-125,

isolate:xylanase producer) DNA]

[DE:

Bacillus halodurans

C-125

genomic DNA, clone

ALBAC003.] [NT:similar to

B.

subtilis

ycgJ gene(35%-identity)]

Contig146G

24089637_c3_1543

2443

6569

759

252

NO-HIT

Contig146G

24093833_c3_1601

2444

6570

276

91

255

6.90E−22

gp:[GI:g3293579] [LN:AF074437]

[AC:AF074437] [PN:RsmA]

[GN:rsmA] [OR:

Serratia

marcescens

] [DE:

Serratia

marcescens

AlaS (alaS) gene,

partial cds; and RsmA (rsmA)gene,

complete cds.] [NT:involved in the

process of swarming and]

Contig146G

24094030_f2_451

2445

6571

645

214

206

1.10E−16

pir:[LN:C70068] [AC:C70068]

[PN:probable chromate transport

protein] [GN:ywrA] [CL:probable

chromate transport protein ywrA]

[OR:

Bacillus subtilis

]

Contig146G

24095687_f1_232

2446

6572

306

101

NO-HIT

Contig146G

24219005_f3_598

2447

6573

270

89

NO-HIT

Contig146G

24219058_c3_1367

2448

6574

1392

463

NO-HIT

Contig146G

24219663_c3_1404

2449

6575

1086

361

1104

7.50E−112

gp:[GI:e293136:g2208965]

[LN:PACIOAB] [AC:Y10528]

[PN:cyanide insensitive terminal

oxidase] [GN:cioB]

[OR:

Pseudomonas aeruginosa

]

[DE:

P.aeruginosa

cioA and cioB

genes.]

Contig146G

24220400_c3_1618

2450

6576

1332

443

760

2.10E−75

gp:[GI:g2271502] [LN:AF009672]

[AC:AF009672] [PN:unknown]

[GN:ORF6] [OR:Acinetobacter sp.

ADP1] [DE:Acinetobacter sp.

ADP1 vanillate demethylase

region, vanillatedemethylase

(vanB) and vanillate demethylase

(vanA) genes, completecds.]

[NT:putative porin]

Contig146G

24222792_c2_1224

2451

6577

1032

343

348

9.70E−32

pir:[LN:S77447] [AC:S77447]

[PN:nitrate transport protein nrtB

homolog:protein s111081:protein

s111081] [CL:Synechococcus

nitrate transport protein nrtB]

[OR:Synechocystis sp.] [SR:PCC

6803,, PCC 6803] [SR:PCC 6803,]

Contig146G

24225250_f3_555

2452

6578

261

86

NO-HIT

Contig146G

24225262_f2_303

2453

6579

216

71

NO-HIT

Contig146G

24229627_f1_64

2454

6580

615

204

NO-HIT

Contig146G

24230438_f1_179

2455

6581

942

313

554

1.40E−53

sp:[LN:YHJC_ECOLI]

[AC:P37641] [GN:YHJC]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL

TRANSCRIPTIONAL

REGULATOR IN TREF-KDGK

INTERGENIC REGION]

[SP:P37641]

Contig146G

24245125_c1_776

2456

6582

954

317

219

1.30E−16

gp:[GI:g2665650] [LN:AF031571]

[AC:AF031571] [PN:unknown]

[OR:

Pseudomonas aeruginosa

]

[DE:

Pseudomonas aeruginosa

unknown protein genes, complete

cds.] [NT:ORF2]

Contig146G

24255432_c1_772

2457

6583

2553

850

1473

5.90E−151

sp:[LN:MRKC_KLEPN]

[AC:P21647] [GN:MRKC]

[OR:

KLEBSIELLA

PNEUMONIAE

] [DE:OUTER

MEMBRANE USHER PROTEIN

MRKC PRECURSOR]

[SP:P21647]

Contig146G

24256887_c3_1439

2458

6584

345

114

NO-HIT

Contig146G

24257137_c2_1319

2459

6585

948

315

1176

1.80E−119

gp:[GI:e1290213:g3116017]

[LN:PFPHCOAHL] [AC:Y13067]

[PN:p-hydroxycinnamoyl CoA

hydratase/lyase]

[OR:

Pseudomonas fluorescens

]

[DE:

Pseudomonas fluorescens

genes encoding p-

hydroxycinnamoyl

CoAhydratase/lyase and vanillin:

NAD+ oxidoreductase.]

Contig146G

24257275_c3_1520

2460

6586

2007

668

178

5.80E−10

pir:[LN:G71620] [AC:G71620]

PN:hypothetical protein

PFB0195c] [GN:PFB0195c]

[OR:

Plasmodium falciparum

]

Contig146G

24301577_f3_566

2461

6587

1491

496

136

7.50E−06

gp:[GI:g3249594] [LN:AF065411]

[AC:AF065411] [PN:large

terminase subunit]

[OR:Methaneobacterium phage

psiM2] [DE:Methanobacterium

phage psiM2, complete genome.]

[NT:ORF9; similar to

Bacillus

subtilis

phage SPP1 large]

Contig146G

24306505_f2_311

2462

6588

282

93

NO-HIT

Contig146G

24306526_f1_217

2463

6589

525

174

240

2.70E−20

sp:[LN:YGB0_YEAST]

[AC:P25338]

[GN:YGL010W:YGL021]

[OR:

SACCHAROMYCES

CEREVISIAE

] [SR:,BAKER'S

YEAST] [DE:HYPOTHETICAL

20.2 KD PROTEIN IN PRS2-

LEU1 INTERGENIC REGION]

[SP:P25338]

Contig146G

24306555_f1_72

2464

6590

495

164

NO-HIT

Contig146G

24333453_f3_705

2465

6591

1467

488

274

1.60E−31

pir:[LN:S74046] [AC:S74046]

[PN:probable sugar transport

protein c0110] [OR:

Sulfolobus

solfataricus

]

Contig146G

24334707_f3_580

2466

6592

1563

520

242

1.60E−17

gp:[GI:e249420:g1405817]

[LN:SMHASF] [AC:X98513]

[PN:HAS ABC exporter outer

membrane component] [GN:hasF]

[OR:

Serratia marcescens

]

[DE:

S.marcescens

hasF gene.]

Contig146G

24351577_f3_613

2467

6593

483

160

306

2.70E−27

pir:[LN:F69857] [AC:F69857]

[PN:conserved hypothetical

protein yknA] [GN:yknA]

[CL:hypothetical protein j]

[OR:

Bacillus subtilis

]

Contig146G

24400307_f2_380

2468

6594

576

191

217

7.40E−18

pir:[LN:F64848] [AC:F64848]

[PN:probable membrane protein

b1057] [OR:

Escherichia coli

]

Contig146G

24406512_f3_490

2469

6595

366

121

NO-HIT

Contig146G

24406587_c2_1245

2470

6596

468

155

NO-HIT

Contig146G

24406683_c1_909

2471

6597

708

235

895

1.10E−89

sp:[LN:Y882_HAEIN]

[AC:P44068] [GN:HI0882]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

HI0882] [SP:P44068]

Contig146G

24407805_f3_729

2472

6598

792

263

244

1.00E−20

pir:[LN:S76871] [AC:S76871]

[PN:hypothetical protein]

[OR:Synechocystis sp.] [SR:PCC

6803,, PCC 6803] [SR:PCC 6803,]

Contig146G

24412590_c1_969

2473

6599

189

62

NO-HIT

Contig146G

24413187_c2_1092

2474

6600

1320

439

390

3.40E−36

sp:[LN:SOXC_RHOSO]

[AC:P54998] [GN:SOXC:DSZC]

[OR:RHODOCOCCUS SP]

[DE:DIBENZOTHIOPHENE

DESULFURIZATION ENZYME

C (DBT SULFUR

DIOXYGENASE)] [SP:P54998]

Contig146G

24414652_f2_362

2475

6601

192

63

NO-HIT

Contig146G

24415937_f3_505

2476

6602

1284

427

1815

3.40E−187

gp:[GI:g2271502] [LN:AF009672]

[AC:AF009672] [PN:unknown]

[GN:ORF6] [OR:Acinetobacter sp.

ADP1] [DE:Acinetobacter sp.

ADP1 vanillate demethylase

region, vanillatedemethylase

(vanB) and vanillate demethylase

(vanA) genes, completecds.]

[NT:putative porin]

Contig146G

24415962_f2_400

2477

6603

1320

439

NO-HIT

Contig146G

24417250_f3_590

2478

6604

4884

1627

454

4.50E−60

gp:[GI:g2920634]

[LN:ECRHSEH2] [AC:AF044501]

[PN:core protein] [OR:

Escherichia

coli

] [DE:

Escherichia coli

strain

cc45 RhsE accessory genetic

element coreprotein gene, partial

cds, and dsORF-e4, complete cds;

and RhsHaccessory genetic

element unknown (450), core

protein, and dsORF-hlgenes,

complete cds.]

Contig146G

24425950_c3_1430

2479

6605

1647

548

1258

3.60E−128

pir:[LN:C70565] [AC:C70565]

[PN:hypothetical protein Rv3454]

[GN:Rv3454] [OR:

Mycobacterium

tuberculosis

]

Contig146G

24431313_c2_1251

2480

6606

195

64

NO-HIT

Contig146G

24431502_f3_558

2481

6607

393

130

NO-HIT

Contig146G

24475342_f1_236

2482

6608

603

200

268

2.90E−23

sp:[LN:YCEI_ECOLI]

[AC:P37904] [GN:YCEI]

[OR:

ESCHERICHIA COLI

]

[DE:18.7 KD PROTEIN IN HTRB-

DINI INTERGENIC REGION

PRECURSOR] [SP:P37904]

Contig146G

24479687_f1_58

2483

6609

612

203

NO-HIT

Contig146G

24495875_c3_1607

2484

6610

216

71

NO-HIT

Contig146G

24496055_c1_1006

2485

6611

516

171

772

1.10E−76

sp:[LN:BENB_ACICA]

[AC:P07770] [GN:BENB]

[OR:

ACINETOBACTER

CALCOACETICUS

]

[EC:1.14.12.10] [DE:BENZOATE

1,2-DIOXYGENASE BETA

SUBUNIT,] [SP:P07770]

Contig146G

24501342_f1_51

2486

6612

975

324

1020

6.00E−103

gp:[GI:g2996626] [LN:AF009224]

[AC:AF009224:M76991:M76990:

M23245:M29848:M29714:M6264

9] [PN:LysR-type transcriptional

activator] [GN:benM]

[OR:Acinetobacter sp. ADP1]

[DE:Acinetobacter sp. ADP1 ben

operon and cat operon,

completesequence.]

Contig146G

24616387_c1_851

2487

6613

783

260

638

1.80E−62

sp:[LN:HMGL_PSEMV]

[AC:P13703] [GN:MVAB]

[OR:

PSEUDOMONAS

MEVALONII

] [EC:4.1.3.4]

[DE:(3-HYDROXY-3-

METHYLGLUTARATE-COA

LYASE)] [SP:P13703]

Contig146G

24626577_c2_1244

2488

6614

1275

424

181

1.40E−10

pir:[LN:F70552] [AC:F70552]

[PN:probable lpqF protein]

[GN:lpqF] [OR:

Mycobacterium

tuberculosis

]

Contig146G

24640675_c2_1183

2489

6615

669

222

178

1.00E−13

sp:[LN:YDHC_BACSU]

[AC:O05494] [GN:YDHC]

[OR:

BACILLUS SUBTILIS

]

[DE:HYPOTHETICAL

TRANSCRIPTIONAL

REGULATOR IN DINB-PHOB

INTERGENIC REGION]

[SP:O05494]

Contig146G

24642177_f3_591

2490

6616

675

224

NO-HIT

Contig146G

24642840_c3_1579

2491

6617

207

68

107

3.30E−06

sp:[LN:MERP_PSEFL]

[AC:Q51770] [GN:MERP]

[OR:

PSEUDOMONAS

FLUORESCENS

]

[DE:(PERIPLASMIC MERCURY

ION BINDING PROTEIN)

(MERCURY SCAVENGER

PROTEIN)] [SP:Q51770]

Contig146G

24645967_c2_1316

2492

6618

957

318

1355

1.90E−138

sp:[LN:VANB_ACICA]

[AC:O24840] [GN:VANB]

[OR:

ACINETOBACTER

CALCOACETICUS

] [EC:1.14.13.—]

[DE:DEGRADATION

FERREDOXIN-LIKE PROTEIN)]

[SP:O24840]

Contig146G

24646003_f1_43

2493

6619

786

261

109

7.00E−07

pir:[LN:D70955] [AC:D70955]

[PN:hypothetical protein Rv3603c]

[GN:Rv3603c]

[OR:

Mycobacterium tuberculosis

]

Contig146G

24646877_c1_890

2494

6620

429

142

NO-HIT

Contig146G

24647802_f2_355

2495

6621

774

257

224

1.30E−18

sp:[LN:YZ27_MYCTU]

[AC:Q10557] [GN:MTCY31.27]

[OR:

MYCOBACTERIUM

TUBERCULOSIS

]

[DE:HYPOTHETICAL 33.6 KD

PROTEIN CY31.27] [SP:Q10557]

Contig146G

24648275_c3_1570

2496

6622

201

66

NO-HIT

Contig146G

24648882_f1_111

2497

6623

483

160

231

2.40E−19

gp:[GI:g2708664] [LN:AF037441]

[AC:AF037441] [PN:putative 18.8

kDa protein] [GN:eip19]

[OR:

Edwardsiella ictaluri

]

[DE:

Edwardsiella ictaluri

putative

188 kDa protein (eip19),

putative17.8 kDa protein (eip18),

putative 54.5 kDa protein (eip55),

andputative 19.5 kDa protein

(eip20) genes, complete cds.]

[NT:EIP19; possibly antigenic to

catfish]

Contig146G

24650037_c2_1243

2498

6624

189

62

NO-HIT

Contig146G

24656577_f2_302

2499

6625

234

77

NO-HIT

Contig146G

24689056_c1_1034

2500

6626

2682

893

2700

5.60E−281

sp:[LN:SYA_HAEIN]

[AC:P43815] [GN:ALAS:HI0814]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:6.1.1.7]

[DE:ALANYL-TRNA

SYNTHETASE, (ALANINE--

TRNA LIGASE) (ALARS)]

[SP:P43815]

Contig146G

24725437_f3_714

2501

6627

573

190

187

4.90E−14

sp:[LN:CHRA_ALCEU]

[AC:P17551] [GN:CHRA]

[OR:

ALCALIGENES

EUTROPHUS

] [DE:CHROMATE

TRANSPORT PROTEIN]

[SP:P17551]

Contig146G

24744025_c1_828

2502

6628

936

311

1186

1.50E−120

sp:[LN:SRPI_SYNP7]

[AC:Q55032] [GN:SRPI]

[OR:SYNECHOCOCCUS SP]

[SR:PCC 7942,ANACYSTIS

NIDULANS R2] [DE:SRPI

PROTEIN] [SP:Q55032]

Contig146G

24812750_f1_7

2503

6629

573

190

NO-HIT

Contig146G

24822336_c3_1582

2504

6630

804

267

1036

1.20E−104

sp:[LN:BEND_ACICA]

[AC:P07772] [GN:BEND]

[OR:

ACINETOBACTER

CALCOACETICUS

]

[EC:1.3.1.55]

[DE:DEHYDROGENASE)]

[SP:P07772]

Contig146G

24850402_c1_792

2505

6631

918

305

766

4.90E−76

gp:[GI:g3046322] [LN:AF010139]

[AC:AF010139] [PN:O-

acetylserine synthase] [GN:cysE2]

[OR:

Azotobacter vinelandii

]

[DE:

Azotobacter vinelandii

iron-

sulfur cluster assembly gene

cluster,suhB, cysE2, iscS, iscU,

iscA, hscB, hscA and fdx genes

completecds; ndk gene, partial

cds.] [NT:CysE2]

Contig146G

24881286_f1_133

2506

6632

420

139

183

3.00E−14

sp:[LN:YM64_ARCFU]

[AC:O28020] [GN:AF2264]

[OR:

ARCHAEOGLOBUS

FULGIDUS

]

[DE:HYPOTHETICAL PROTEIN

AF2264] [SP:O28020]

Contig146G

24881542_f1_100

2507

6633

825

274

676

1.70E−66

sp:[LN:YCSI_BACSU]

[AC:P42966] [GN:YCSI]

[OR:

BACILLUS SUBTILIS

]

[DE:HYPOTHETICAL 28.1 KD

PROTEIN IN SIPU-PBPC

INTERGENIC REGION]

[SP:P42966]

Contig146G

24882812_f2_312

2508

6634

366

121

NO-HIT

Contig146G

24883377_c2_1295

2509

6635

363

120

111

1.30E−06

sp:[LN:ANP_LIMFE]

[AC:P09031] [OR:

LIMANDA

FERRUGINEA

]

[SR:,YELLOWTAIL

FLOUNDER] [DE:ANTIFREEZE

PROTEIN PRECURSOR (AFP)]

[SP:P09031]

Contig146G

24897128_c1_885

2510

6636

303

100

95

6.30E−05

gp:[GI:g3378268] [LN:AF079317]

[AC:AF079317] [PN:unknown]

[GN:orf045] [OR:

Sphingomonas

aromaticivorans

]

[DE:

Sphingomonas

aromaticivorans

plasmid pNL1,

complete plasmidsequence.]

Contig146G

250002_c3_1541

2511

6637

2676

891

2134

5.30E−221

sp:[LN:MUTS_AZOVI]

[AC:P27345] [GN:MUTS]

[OR:

AZOTOBACTER

VINELANDII

] [DE:DNA

MISMATCH REPAIR PROTEIN

MUTS] [SP:P27345]

Contig146G

25276_c1_771

2512

6638

744

247

464

4.90E−44

gp:[GI:g39717] [LN:BPACCG]

[AC:X66729] [PN:

filamentous

hemagglutinin

] [GN:FhaD]

[OR:

Bordetella pertussis

]

[DE:

B.pertussis

fhaD, fhaA and

fhaE genes.] [SP:P33409]

Contig146G

25400277_c3_1608

2513

6639

726

241

567

6.00E−55

pir:[LN:S77110] [AC:S77110]

[PN:hypothetical protein s111773]

[CL:conserved hypothetical

protein s111773]

[OR:Synechocystis sp.] [SR:PCC

6803,, PCC 6803] [SR:PCC 6803,]

Contig146G

25406692_c2_1141

2514

6640

1251

416

NO-HIT

Contig146G

25424077_f2_356

2515

6641

1095

364

NO-HIT

Contig146G

25472150_f2_470

2516

6642

879

292

219

4.50E−18

sp:[LN:HVRB_RHOCA]

[AC:P42507] [GN:HVRB]

[OR:

RHODOBACTER

CAPSULATUS

]

[SR:,

RHODOPSEUDOMONAS

CAPSULATA

] [DE:AHCY

TRANSCRIPTIONAL

ACTIVATOR HVRB]

[SP:P42507]

Contig146G

25500251_f1_62

2517

6643

477

158

214

1.50E−17

pir:[LN:F70918] [AC:F70918]

[PN:probable regulatoryprotein]

[GN:Rv3095] [OR:

Mycobacterium

tuberculosis

]

Contig146G

25509701_f3_581

2518

6644

615

204

217

7.40E−18

sp:[LN:YA64_METJA]

[AC:Q58464] [GN:MJ1064]

[OR:

METHANOCOCCUS

JANNASCHII

]

[DE:HYPOTHETICAL PROTEIN

MJ1064] [SP:Q58464]

Contig146G

25553503_c3_1351

2519

6645

249

82

NO HIT

Contig146G

25553587_f1_97

2520

6646

531

176

NO-HIT

Contig146G

2556302_c3_1377

2521

6647

696

231

160

2.40E−11

pir:[LN:E70790] [AC:E70790]

[PN:probable transcription

regulator Rv3676] [GN:Rv3676]

[OR:

Mycobacterium tuberculosis

]

Contig146G

25566256_f3_551

2522

6648

2541

846

2647

2.30E−275

gp:[GI:g1353678]

[LN:PMU42410] [AC:U42410]

[PN:heavy-metal transporting P-

type ATPase] [OR:

Proteus

mirabilis

] [DE:

Proteus mirabilis

heavy-metal transporting P-type

ATPase gene,partial cds.] [RE:

Contig146G

25594062_c2_1073

2523

6649

1053

350

398

4.90E−37

gp:[GI:g1657970]

[LN:PAU73506] [AC:U73506]

[PN:OruR] [GN:oruR]

[OR:

Pseudomonas aeruginosa

]

[DE:

Pseudomonas aeruginosa

ornithine utilization regulatory

(oruR)gene, complete cds.]

[NT:regulatory locus for ornithine

utilization]

Contig146G

25604662_f1_145

2524

6650

1230

409

1866

1.30E−192

sp:[LN:PHHY_ACICA]

[AC:Q03298] [GN:POBA]

[OR:

ACINETOBACTER

CALCOACETICUS

]

[EC:1.14.13.2]

[DE:MONOOXYGENASE)]

[SP:Q03298]

Contig146G

25664511_f1_20

2525

6651

717

238

938

2.90E−94

gp:[GI:g2271498] [LN:AF009672]

[AC:AF009672] [PN:unknown]

[OR:Acinetobacter sp. ADP1]

[DE:Acinetobacter sp. ADP1

vanillate demethylase region,

vanillatedemethylase (vanB) and

vanillate demethylase (vanA)

genes, completecds.] [NT:putative

regulatory protein; ORF4]

Contig146G

25665937_c3_1420

2526

6652

864

287

1050

4.00E−106

sp:[LN:YGHU_ECOLI]

[AC:Q46845] [GN:YGHU]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 34.2 KD

PROTEIN IN GSP-HYBG

INTERGENIC REGION]

[SP:Q46845]

Contig146G

25994013_f1_120

2527

6653

291

96

NO-HIT

Contig146G

26071012_f2_419

2528

6654

624

207

301

9.30E−27

gp:[GI:g862632] [LN:XXU13633]

[AC:U13633] [PN:RumA(R391)]

[GN:rumA(R391)] [OR:IncJ

plasmid R391] [DE:IncJ plasmid

R391 rumA(R391) and

rumB(R391) genes, complete cds.]

[NT:similar to

Escherichia coli

UmuD, Swiss-Prot]

Contig146G

26174090_f3_710

2529

6655

699

232

263

9.90E−23

sp:[LN:YCAC_ECOLI]

[AC:P21367] [GN:YCAC]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 23.1 KD

PROTEIN IN DMSC-PFLA

INTERGENIC REGION]

[SP:P21367]

Contig146G

26174160_f2_391

2530

6656

888

295

592

1.30E−57

gp:[GI:g3378447] [LN:AF079317]

[AC:AF079317] [PN:unknown]

[GN:orf1338] [OR:

Sphingomonas

aromaticivorans

]

[DE:

Sphingomonas

aromaticivorans

plasmid pNL1,

complete plasmidsequence.]

[NT:putative inner membrane

protein similar to B.]

Contig146G

26225262_f2_338

2531

6657

1035

344

256

2.00E−28

pir:[LN:F64805] [AC:F64805]

[PN:hypothetical protein b0703]

[OR:

Escherichia coli

]

Contig146G

26258561_f3_536

2532

6658

624

207

405

8.80E−38

sp:[LN:GT_PROMI] [AC:P15214]

[GN:GSTB] [OR:

PROTEUS

MIRABILIS

] [EC:2.5.1.18]

[DE:GLUTATHIONE S-

TRANSFERASE GST-6.0, (GST

B1-1)] [SP:P15214]

Contig146G

26265638_f2_457

2533

6659

666

221

172

4.30E−13

sp:[LN:YD07_HAEIN]

[AC:Q57320:O05057]

[GN:HI1307]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

HI1307] [SP:Q57320:O05057]

Contig146G

26348387_c1_766

2534

6660

1188

395

1500

8.20E−154

sp:[LN:METK_ECOLI]

[AC:P04384:P30869]

[GN:METK:METX]

[OR:

ESCHERICHIA COLI

]

[EC:2.5.1.6]

[DE:ADENOSYLTRANSFERAS

E) (ADOMET SYNTHETASE)]

[SP:P04384:P30869]

Contig146G

26354500_f2_353

2535

6661

1845

614

NO-HIT

Contig146G

26360905_c1_994

2536

6662

201

66

NO-HIT

Contig146G

26364693_c2_1102

2537

6663

1482

493

1440

1.90E−147

pir:[LN:H65000] [AC:H65000]

[PN:hypothetical protein b2290]

[OR:

Escherichia coli

]

Contig146G

26454055_f1_71

2538

6664

489

162

NO-HIT

Contig146G

26579438_c2_1120

2539

6665

936

311

671

5.70E−66

sp:[LN:MAUR_KLEPN]

[AC:P52684] [GN:MAUR]

[OR:

KLEBSIELLA

PNEUMONIAE

]

[DE:MALONATE UTILIZATION

TRANSACTING REGULATOR]

[SP:P52684]

Contig1466

265938_f2_250

2540

6666

201

66

NO-HIT

Contig146G

26595628_f3_644

2541

6667

729

242

381

3.10E−35

gp:[GI:g1763080]

[LN:STU69493] [AC:U69493]

[PN:PhnR] [FN:probable repressor

protein of GntR family]

[OR:

Salmonella typhimurium

]

[DE:

Salmonella typhimurium

ThiJ

and Orf1 genes, partial cds, and

PhnX,PhnW, PhnR, PhnS, PhnT,

PhnU and PhnV genes, complete

cds.]

Contig146G

26597550_c1_800

2542

6668

897

298

427

4.10E−40

pir:[LN:S77111] [AC:S77111]

[PN:transcription regulator

slr1871:protein slr1871:protein

slr1871] [CL:conserved

hypothetical protein HI1364]

[OR:Synechocystis sp.] [SR:PCC

6803,, PCC 6803] [SR:PCC 6803,]

Contig146G

26598562_c2_1340

2543

6669

1338

445

1165

2.60E−118

sp:[LN:YCJJ_ECOLI]

[AC:P76037] [GN:YCJJ]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 50.9 KD

TRANSPORT PROTEIN IN

SAPA-ALDH INTERGENIC

REGION] [SP:P76037]

Contig146G

26601383_f1_99

2544

6670

1260

419

946

4.10E−95

pir:[LN:E69765]

[AC:E69765:I39896:I39895]

[PN:branched chain amino acids

transporter homolog ycsG]

[GN:ycsG] [OR:

Bacillus subtilis

]

Contig146G

26601550_f2_401

2545

6671

1224

407

571

2.30E−55

pir:[LN:D69779] [AC:D69779]

[PN:antibiotic resistance protein

homolog ydeR] [GN:ydeR]

[OR:

Bacillus subtilis

]

Contig146G

26648532_f2_438

2546

6672

786

261

1006

1.80E−101

gp:[GI:d1037198:g4062981]

[LN:AB017138] [AC:AB017138]

[PN:malonate transporter]

[GN:mdcM] [OR:

Pseudomonas

putida

] [SR:

Pseudomonas putida

DNA] [DE:

Pseudomonas putida

malonate decarboxylase gene

cluster (mdcA, mdcB,mdcC,

mdcD, mdcE, mdcG, mdcH, mdcL

and mdcM genes), complete cds.]

Contig146G

267186_c3_1584

2547

6673

1413

470

1249

3.20E−127

gp:[GI:g2352826] [LN:AF009224]

[AC:AF009224:M76991:M76990:

M23245:M29848:M29714:M6264

9] [PN:benzoate transport protein]

[GN:benK] [OR:Acinctobacter sp.

ADP1] [DE:Acinetobacter sp.

ADP1 ben operon and cat operon,

completesequence.]

Contig146G

26735812_c3_1437

2548

6674

228

75

NO-HIT

Contig146G

26756555_f2_261

2549

6675

1251

416

941

1.40E−94

gp:[GI:g3097809] [LN:PSEPAHP]

[AC:L49465] [PN:hypothetical

metabolite transport protein]

[OR:

Pseudomonas fluorescens

]

[DE:

Pseudomonas fluorescens

hypothetical metabolite transport

protein,positive transcriptional

regulator (phnR),

phosphonoacetatehydrolase

(phnA), 2-phosphonopropionate

transporter (phnB),putative

putrescine/spermidine binding

protein, and putativemethionine

sulfoxide reductase genes,

complete cds.] [NT:Orf1]

Contig146G

26770143_f1_88

2550

6676

966

321

545

1.30E−52

pir:[LN:E69400] [AC:E69400]

[PN:3-hydroxyacyl-CoA

dehydrogenase (hbd-8) homolog]

[OR:

Archaeoglobus fulgidus

]

Contig146G

2734432_f3_535

2551

6677

2451

816

438

3.90E−60

pir:[LN:S74915] [AC:S74915]

[PN:extraceltular nuclease:protein

s110656:protein s110656]

[GN:nucH] [OR:Synechocystis

sp.] [SR:PCC 6803,, PCC 6803]

[SR:PCC 6803,]

Contig146G

274192_f2_382

2552

6678

1053

350

375

1.30E−34

sp:[LN:Y4VJ_RHISN]

[AC:Q53218] [GN:Y4VJ]

[OR:RHIZOBIUM SP]

[DE:HYPOTHETICAL 39.2 KD

PROTEIN Y4VJ] [SP:Q53218]

Contig146G

277187_c1_900

2553

6679

2118

705

1972

7.80E−204

gp:[GI:e242876:g2764822]

[LN:ECPAA] [AC:X97452]

[GN:Z] [OR:

Escherichia coli

]

[DE:

E.coli

cluster for phenylacetic

acid degradation.] [SP:P77455]

Contig146G

2772183_c1_785

2554

6680

366

121

88

0.00093

sp:[LN:H1_LYTPI] [AC:P06144]

[OR:

LYTECHINUS PICTUS

]

[SR:,PAINTED SEA URCHIN]

[DE:LATE HISTONE H1]

[SP:P06144]

Contig146G

2772841_f3_606

2555

6681

342

113

NO-HIT

Contig146G

283550_f1_1

2556

6682

3063

1020

113

6.00E−10

gp:[GI:d1032561:g3327064]

[LN:AB014525] [AC:AB014525]

[PN:KIAA0625 protein]

[GN:KIAA0625] [OR:

Homo

sapiens] [SR:

Homo sapiens

adult

male brain cDNA to mRNA,

clone_lib:pBluescriptI]

[DE:

Homo sapiens

mRNA for

KIAA0625 protein, partial cds.]

Contig146G

29304677_f3_514

2557

6683

1578

525

919

3.00E−92

pir:[LN:D70861] [AC:D70861]

[PN:probable monoxygenase]

[GN:Rv3049c]

[OR:

Mycobacterium tuberculosis

]

Contig146G

29323305_c1_763

2558

6684

639

212

NO-HIT

Contig146G

29376092_f1_149

2559

6685

906

301

562

2.00E−54

gp:[GI:g1177876]

[LN:PAU45309] [AC:U45309]

[PN:2-phosphonoacetaldehyde

hydrolase] [OR:

Pseudomonas

aeruginosa

] [DE:

Pseudomonas

aeruginosa

2-

phosphonoacetaldehyde hydrolase

gene,complete cds.]

[NT:phosphonatase]

Contig146G

29400277_f2_378

2560

6686

609

202

585

7.40E−57

gp:[GI:e242889:g2764835]

[LN:ECPAA] [AC:X97452]

[GN:Y] [OR:

Escherichia coli

]

[DE:

E.coli

cluster for phenylacetic

acid degradation.]

Contig146G

29462750_f1_144

2561

6687

1509

502

1557

7.40E−160

sp:[LN:GABD_ECOLI]

[AC:P25526] [GN:GABD]

[OR:

ESCHERICHIA COLI

]

[EC:1.2.1.16] [DE:SUCCINATE-

SEMIALDEHYDE

DEHYDROGENASE (NADP+),

(SSDH)] [SP:P25526]

Contig146G

2947158_f1_174

2562

6688

669

222

515

1.90E−49

pir:[LN:B64666] [AC:B64666]

[PN:glutamine ABC transporter,

permease protein]

[OR:

Helicobacter pylori

]

Contig146G

29562515_f3_739

2563

6689

396

131

NO-HIT

Contig146G

29798751_f1_67

2564

6690

570

189

NO-HIT

Contig146G

29816507_c1_769

2565

6691

1131

376

858

8.80E−86

sp:[LN:YJES_ECOLI]

[AC:P39288] [GN:YJES]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 43.1 KD

PROTEIN IN PSD-AMIB

INTERGENIC REGION (F379)]

[SP:P39288]

Contig146G

29922562_c3_1502

2566

6692

951

316

344

2.60E−31

sp:[LN:YWFM_BACSU]

[AC:P39649] [GN:YWFM:IPA-

91D] [OR:

BACILLUS SUBTILIS

]

[DE:HYPOTHETICAL 31.3 KD

PROTEIN IN PTA 3′REGION]

[SP:P39649]

Contig146G

3000008_f2_333

2567

6693

225

74

NO-HIT

Contig146G

30084375_f2_325

2568

6694

624

207

323

4.30E−29

gp:[GI:e1390216:g4467115]

[LN:ATF20D10] [AC:AL035538]

[PN:putative protein]

[GN:F20D10.210]

[OR:

Arabidopsis thaliana

]

[SR:thale cress] [DE:

Arabidopsis

thaliana

DNA chromosome 4,

BAC clone F20D10

(ESSAproject).] [NT:similarity to

hypothetical protein HI0722

(pepQ]

Contig146G

30500377_f3_685

2569

6695

645

214

256

5.40E−22

sp:[LN:YIGJ_ECOLI]

[AC:P27846] [GN:YIGJ]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 22.5 KD

PROTEIN IN RECQ-PLDB

INTERGENIC REGION]

[SP:P27846]

Contig146G

30743760_f3_552

2570

6696

417

138

314

3.90E−28

gp:[GI:g2394312] [LN:AF017747]

[AC:AF017747] [PN:heavy metal

dependent transcription regulator]

[OR:

Proteus mirabilis

]

[DE:

Proteus mirabilis

heavy metal

dependent transcription

regulatorgene, complete cds.]

[NT:similar to members of MerR

family; HMDTR;]

Contig146G

3145286_f3_605

2571

6697

1026

341

NO-HIT

Contig146G

3147207_c1_965

2572

6698

183

60

NO-HIT

Contig146G

31522217_f2_363

2573

6699

795

264

227

6.40E−19

gp:[GI:g4099904]

[LN:PLU91412] [AC:U91412]

[PN:LuxZ] [GN:luxZ]

[OR:

Photobacterium leiognathi

]

[DE:

Photobacterium leiognathi

LuxZ (luxZ) gene, complete cds.]

[NT:enhances bioluminescence of

the lux operon]

Contig146G

3159430_c3_1346

2574

6700

1854

617

1695

1.80E−174

sp:[LN:YA51_HAEIN]

[AC:Q57180:O05043]

[GN:HI1051]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL ABC

TRANSPORTER ATP-BINDING

PROTEIN HI1051]

[SP:Q57180:O05043]

Contig146G

31673453_f3_529

2575

6701

426

141

151

7.30E−11

gp:[GI:d1006792:g639688]

[LN:STMPHNOL] [AC:D29961]

[PN:regulatory protein for C-P

lyase] [GN:phnO-like]

[OR:

Streptomyces griseus

]

[SR:

Streptomyces griseus

(strain:B2682) DNA]

[DE:

Streptomyces griseus

phnO-

like gene for regulatory protein for

C-Plyase, complete cds.]

Contig146G

31829692_c2_1095

2576

6702

861

286

420

2.30E−39

gp:[GI:e1288207:g3087788]

[LN:LPN5668] [AC:AJ005668]

[PN:29 kDa immunogenic protein]

[OR:

Legionella pneumophila

]

[DE:

Legionella pneumophila

gene

encoding a 29 kDa immunogenic

protein.]

Contig146G

32041313_f2_331

2577

6703

717

238

115

5.60E−05

pir:[LN:B70938] [AC:B70938]

[PN:probable regulatory protein]

[GN:Rv0238] [OR:

Mycobacterium

tuberculosis

]

Contig146G

32212778_f3_524

2578

6704

1023

340

821

7.30E−82

sp:[LN:G3PP_ALCEU]

[AC:P50322] [GN:CBBGP]

[OR:

ALCALIGENES

EUTROPHUS

] [EC:1.2.1.12]

[DE:GLYCERALDEHYDE 3-

PHOSPHATE

DEHYDROGENASE,

PLASMID,] [SP:P50322]

Contig146G

32218827_f3_684

2579

6705

861

286

706

1.10E−69

gp:[GI:g4155688] [LN:AE001537]

[AC:AE001537:AE001439]

[PN:AMINO ACID ABC

TRANSPORTER, BINDING

PROTEIN] [GN:jhp1099]

[OR:

Helicobacter pylori

J99]

[DE:

Heiicobacter pylori

, strain J99

section 98 of 132 of the

completegenome.] [NT:similar to

H. pylori

26695 gene HP1172]

Contig146G

32617838_f1_109

2580

6706

354

117

259

2.60E−22

gp:[GI:g2708667] [LN:AF037441]

[AC:AF037441] [PN:putative 19.5

kDa protein] [GN:eip20]

[OR:

Edwardsiella ictaluri

]

[DE:

Edwardsiella ictaluri

putative

18.8 kDa protein (eip19),

putative17.8 kDa protein (eip18),

putative 54.5 kDa protein (eip55),

andputative 19.5 kDa protein

(eip20) genes, complete cds.]

[NT:EIP20; possibly antigenic to

catfish]

Contig146G

3297202_f1_123

2581

6707

231

76

124

5.00E−07

pir:[LN:H71183] [AC:H71183]

[PN:probably D-nopaline

dehydrogenase] [GN:PH1749]

[OR:

Pyrococcus horikoshii

]

Contig146G

3297316_c1_757

2582

6708

222

73

NO-HIT

Contig146G

3319002_c3_1361

2583

6709

279

92

NO-HIT

Contig146G

33239687_f1_209

2584

6710

864

287

240

2.70E−20

pir:[LN:D69749] [AC:D69749]

[PN:transcription regulator

AraC/XylS family homolog ybfI]

[GN:ybfI] [OR:

Bacillus subtilis

]

Contig146G

33240943_f2_308

2585

6711

207

68

NO-HIT

Contig146G

3324175_f1_156

2586

6712

1362

453

1321

7.60E−135

gp:[GI:g1842056]

[LN:ACU87258] [AC:U87258]

[PN:cis,cis-muconate transport

protein MucK] [GN:mucK]

[OR:Acinetobacter sp. ADP1]

[DE:Acinetobacter sp. ADP1

cis,cis-muconate transport protein

MucK(mucK) and electron transfer

flavoprotein-ubiquinone

oxidoreductasehomolog genes,

complete cds.]

Contig146G

33395337_c1_902

2587

6713

1605

534

1654

3.90E−170

pir:[LN:D70035] [AC:D70035]

[PN:permease homolog yveA]

[GN:yveA] [OR:

Bacillus subtilis

]

Contig146G

33396937_c3_1434

2588

6714

903

300

859

6.90E−86

sp:[LN:YHDF_BACSU]

[AC:O07575] [GN:YHDF]

[OR:

BACILLUS SUBTILIS

]

[EC:1.—.—.—] [DE:(EC 1.—.

—.—)]

[SP:O07575]

Contig146G

33401662_f3_604

2589

6715

906

301

132

2.20E−05

gp:[GI:e1252197:g2897626]

[LN:LP22KBICM] [AC:Y15044]

[PN:lcmF protein] [GN:icmF]

[OR:

Legionella pneumophila

]

[DE:

Legionella pneumophila

22kB

DNA fragment from icm gene

cluster.]

Contig146G

33480327_f2_348

2590

6716

1824

607

956

1.30E−95

gp:[GI:g173122]

[LN:YSCUAMD] [AC:M64926]

[PN:urea amidolyase]

[GN:DUR1.2] [FN:hydrolysis of

urea to ammonia and CO2]

[OR:

Saccharomyces cerevisiae

]

[SR:

Saccharomyces cerevisiae

DNA] [EC:6.3.4.6] [DE:Yeast

urea amidolyase (DUR1.2) gene,

complete cds.]

Contig146G

3364681_f3_586

2591

6717

1398

465

538

1.80E−50

pir:[LN:S76238] [AC:S76238]

[PN:hypothetical protein s110267]

[OR:Synechocystis sp.] [SR:PCC

6803,, PCC 6803] [SR:PCC 6803,]

Contig146G

33650302_f2_322

2592

6718

588

195

222

2.20E−18

sp:[LN:YHBN_HAEIN]

[AC:P45074] [GN:HI1149]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

HI1149 PRECURSOR]

[SP:P45074]

Contig146G

33753430_f1_80

2593

6719

1236

411

358

8.40E−33

sp:[LN:CYAD_BORPE]

[AC:P11091] [GN:CYAD]

[OR:

BORDETELLA

PERTUSSIS

] [DE:CYAD

PROTEIN] [SP:P11091]

Contig146G

33765633_c1_996

2594

6720

243

80

NO-HIT

Contig146G

33843818_c2_1302

2595

6721

1062

353

903

1.50E−90

sp:[LN:TAS_ECOLI]

[AC:Q46933] [GN:TAS]

[OR:

ESCHERICHIA COLI

]

[DE:TAS PROTEIN] [SP:Q46933]

Contig146G

3392937_f1_78

2596

6722

570

189

NO-HIT

Contig146G

3397952_f2_313

2597

6723

483

160

NO-HIT

Contig146G

33986305_c2_1273

2598

6724

234

77

NO-HIT

Contig146G

33992061_c1_850

2599

6725

2013

670

783

4.30E−143

gp:[GI:g533707] [LN:ATU12536]

[AC:U12536] [PN:3-

methylcrotonyl-CoA carboxylase

precursor] [FN:carboxylation of 3-

methylcrotonyl-CoA]

[OR:

Arabidopsis thaliana

]

[SR:thale cress] [EC:6.4.1.4]

[DE:

Arabidopsis thaliana

3-

methylcrotonyl-CoA carboxylase

precursormRNA, complete cds.]

Contig146G

34010467_f1_130

2600

6726

1551

516

1007

1.40E−101

gp:[GI:g3253199] [LN:AF029714]

[AC:AF029714:Z71175]

[PN:PhaC] [GN:phaC]

[OR:

Pseudomonas putida

]

[DE:

Pseudomonas putida

repressor

(phaN), regulatory protein

(phaM),enoyl-CoA hydratase I

(phaA), enoyl-CoA hydratase II

(phaB),3-hydroxyacyl-CoA

dehydrogenase (phaC),

ketothiolase (phaD),phenylacetyl-

CoA ligase (phaE), ring-oxidation

complex protein 1(phaF), ring-

oxidation complex protein 2

(phaG), ring-oxidationcomplex

protein 3 (phaH), ring-oxidation

complex protein 4 (phaI),permease

(phaJ), channel-forming protein

(phaK), and ring-openingenzyme

(phaL) genes, complete cds.]

[NT:3-Hydroxyacyl-CoA

dehydrogenase]

Contig146G

34015701_c3_1573

2601

6727

249

82

NO-HIT

Contig146G

34025267_c2_1332

2602

6728

1494

497

965

4.00E−97

gp:[GI:e1312028:g3336914]

[LN:PSP6231] [AC:AJ006231]

[PN:coniferyl aldehyde

dehydrogenase] [GN:calB]

[OR:Pseudomonas sp.]

[SR:Pseudomonas sp]

[DE:Pseudomonas sp. calB gene.]

Contig146G

34026693_f1_66

2603

6729

471

156

NO-HIT

Contig146G

34100318_f2_284

2604

6730

2592

863

2805

4.20E−292

sp:[LN:CLPB_HAEIN]

[AC:P44403] [GN:CLPB:HI0859]

[OR:

HAEMOPHILUS

INFLUENZAE

] [DE:CLPB

PROTEIN] [SP:P44403]

Contig146G

34100442_c1_845

2605

6731

303

100

NO-HIT

Contig146G

34100917_c2_1086

2606

6732

486

161

NO-HIT

Contig146G

34105437_f3_656

2607

6733

684

227

759

2.70E−75

sp:[LN:PCAI_ACICA]

[AC:Q43973:Q43933]

[GN:PCAI:CATI]

[OR:

ACINETOBACTER

CALCOACETICUS

] [EC:2.8.3.6]

[DE:KETOADIPATE:SUCCINYL

COA TRANSFERASE)]

[SP:Q43973:Q43933]

Contig146G

34120317_f1_60

2608

6734

183

60

NO-HIT

Contig146G

34157002_f2_383

2609

6735

1431

476

747

5.10E−74

pir:[LN:E70081] [AC:E70081]

[PN:purine-cytosine permease

homolog yxlA] [GN:yxlA]

[OR:

Bacillus subtilis

]

Contig146G

34164167_f1_127

2610

6736

342

113

359

6.60E−33

sp:[LN:PAAB_ECOLI]

[AC:P76078] [GN:PAAB]

[OR:

ESCHERICHIA COLI

]

[DE:PHENYLACETIC ACID

DEGRADATION PROTEIN

PAAB] [SP:P76078]

Contig146G

34167325_f2_465

2611

6737

483

160

180

6.10E−14

sp:[LN:AZLB_BACSU]

[AC:O07920] [GN:AZLB]

[OR:

BACILLUS SUBTILIS

]

[DE:TRANSCRIPTIONAL

REGULATOR AZLB]

[SP:O07920]

Contig146G

34173187_f3_694

2612

6738

630

209

383

1.90E−35

gp:[GI:g2897873]

[LN:MXU81516] [AC:U81516]

[PN:unknown] [OR:

Myxococcus

xanthus

] [DE:

Myxococcus

xanthus

ABC transporter homolog

gene, partial cds andRNA

polymerase sigma-54 factor (rpoN)

gene, complete cds.] [NT:orf; 3′ of

rpoN]

Contig146G

34187687_f1_216

2613

6739

543

180

NO-HIT

Contig146G

34261527_f1_104

2614

6740

669

222

155

3.00E−10

pir:[LN:D69758] [AC:D69758]

[PN:hypothetical protein ycgI]

[GN:ycgI] [OR:

Bacillus subtilis

]

Contig146G

34412653_f1_69

2615

6741

195

64

NO-HIT

Contig146G

34412885_c2_1252

2616

6742

489

162

277

3.20E−24

sp:[LN:Y4TD_RHISN]

[AC:P55658] [GN:Y4TD]

[OR:RHIZOBIUM SP]

[DE:HYPOTHETICAL

TRANSCRIPTIONAL

REGULATOR Y4TD]

[SP:P55658]

Contig146G

34437_c1_1038

2617

6743

225

74

NO-HIT

Contig146G

34507750_f2_332

2618

6744

1335

444

676

1.70E−66

gp:[GI:g3172116]

[LN:ACCPCAOP]

[AC:L05770:U04359:M33798:U2

0284:U11554:L13114:L03407]

[PN:putative transport protein]

[GN:pcaK] [OR:Acinetobacter sp.

ADP1] [DE:Acinetobacter sp.

ADP1 pca-qui-pob supraoperonic

cluster, completesequence.]

Contig146G

34547840_f3_618

2619

6745

1326

441

217

1.00E−29

gp:[GI:g1519477]

[LN:RMU66830] [AC:U66830]

[PN:OoxA] [OR:

Rhizobium

meliloti] [DE:

Rhizobium meliloti

octopine catabolism operon: occR,

occQ, occM,occP, occT, occB, and

occA genes. complete cds.]

[NT:opine oxidase subunit;

oxidase]

Contig146G

34582503_c3_1349

2620

6746

3783

1260

3695

0

sp:[LN:PUTA_ECOLI]

[AC:P09546:P78296]

[GN:PUTA:POAA]

[OR:

ESCHERICHIA COLI

]

[EC:1.5.99.8:1.5.1.12]

[DE:DEHYDROGENASE)]

[SP:P09546:P78296]

Contig146G

34616625_c3_1583

2621

6747

1215

404

1628

2.20E−167

sp:[LN:BENE_ACICA]

[AC:P07775] [GN:BENE]

[OR:

ACINETOBACTER

CALCOACETICUS

]

[DE:BENZOATE MEMBRANE

TRANSPORT PROTEIN]

[SP:P07775]

Contig146G

34619077_c2_1130

2622

6748

1986

661

1369

2.60E−145

gp:[GI:e335040:g2342628]

[LN:MLCB22] [AC:Z98741]

[PN:nifS-like protein]

[GN:MLCB22.44c]

[OR:

Mycobacterium leprae

]

[DE:

Mycobacterium leprae

cosmid

B22.] [NT:MLCB22.44c, nifS-like

protein, len: 611;]

Contig146G

34641881_f3_603

2623

6749

1431

476

NO-HIT

Contig146G

34662762_f1_65

2624

6750

648

215

93

0.00027

gp:[GI:g4155836] [LN:AE001547]

[AC:AE001547:AE001439]

[PN:putative] [GN:jhp1208]

[OR:

Helicobacter pylori

J99]

[PN:putative] [GN:jhp1208]

section 108 of 132 of the

completegenome.] [NT:similar to

H. pylori

26695 gene HP1288]

Contig146G

35275338_c3_1574

2625

6751

195

64

NO-HIT

Contig146G

35338437_f2_464

2626

6752

723

240

450

1.50E−42

sp:[LN:GLTK_ECOLI]

[AC:P41075] [GN:GLTK]

[OR:

ESCHERICHIA COLI

]

[DE:GLUTAMATE/ASPARTATE

TRANSPORT SYSTEM

PERMEASE PROTEIN GLTK]

[SP:P41075]

Contig146G

35343775_c3_1615

2627

6753

1482

493

1533

2.60E−157

gp:[GI:e1290214:g3116018]

[LN:PFPHCOAHL] [AC:Y13067]

[PN:vanillin: NAD+

oxidoreductase] [GN:vdh]

[OR:

Pseudomonas fluorescens

]

[DE:

Pseudomonas fluorescens

genes encoding p-

hydroxycinnamoyl

CoAhydratase/lyase and vanillin:

NAD+ oxidoreductase.]

Contig146G

35359802_c3_1572

2628

6754

348

115

NO-HIT

Contig146G

35396888_f2_309

2629

6755

339

112

NO-HIT

Contig146G

35431580_f1_57

2630

6756

201

66

NO-HIT

Contig146G

35673142_f1_141

2631

6757

1503

500

957

2.80E−96

gp:[GI:e286198:g1743354]

[LN:NTALDEDEH] [AC:Y09876]

[PN:aldehyde dehydrogenase

(NAD+)] [GN:Aldh 2A]

[OR:

Nicotiana tabacum

]

[SR:common tobacco]

[EC:1.2.1.3] [DE:

N.tabacum

mRNA for aldehyde

dehydrogenase.]

Contig146G

35782883_f2_357

2632

6758

849

282

NO-HIT

Contig146G

35812507_f3_699

2633

6759

969

322

691

4.40E−68

gp:[GI:d1037191:g4062974]

[LN:AB017138] [AC:AB017138]

[GN:mdcB] [FN:involved in

biosynthesis of the prothetic

group] [OR:

Pseudomonas putida

]

[SR:

Pseudomonas putida

DNA]

[DE:

Pseudomonas putida

malonate

decarboxylase gene cluster (mdcA,

mdcB,mdcC, mdcD, mdcE, mdcG,

mdcH, mdcL and mdeM genes),

complete cds.]

Contig146G

35937512_f1_33

2634

6760

849

282

372

2.80E−34

pir:[LN:C70814] [AC:C70814]

[PN:hypothetical protein Rv0851c]

[GN:Rv0851c]

[OR:

Mycobacterium tuberculosis

]

Contig146G

36132811_c1_1036

2635

6761

576

191

259

2.60E−22

pir:[LN:F64848] [AC:F64848]

[PN:probable membrane protein

b1057] [OR:

Escherichia coli

]

Contig146G

36204682_f2_462

2636

6762

927

308

588

3.60E−57

sp:[LN:YBEJ_ECOLI]

[AC:P37902:P41408:P77612]

[GN:YBEJ] [OR:

ESCHERICHIA

COLI

] [DE: REGION

PRECURSOR]

[SP:P37902:P41408:P77612]

Contig146G

36207813_f1_108

2637

6763

705

234

NO-HIT

Contig146G

36564437_f1_107

2638

6764

1044

347

435

5.80E−41

pir:[LN:S77448] [AC:S77448]

[PN:hypothetical protein s111080]

[OR:Synechocystis sp.] [SR:PCC

6803,, PCC 6803] [SR:PCC 6803,]

Contig146G

36572182_c2_1315

2639

6765

1179

392

1770

2.00E−182

gp:[GI:g2271500] [LN:AF009672]

[AC:AF009672] [PN:vanillate

demethylase] [GN:vanA]

[OR:Acinetobacter sp. ADP1]

[DE:Acinetobacter sp. ADP1

vanillate demethylase region,

vanillatedemethylase (vanB) and

vanillate demethylase (vanA)

genes, completecds.] [NT:vanA

subunit]

Contig146G

36602292_f3_600

2640

6766

3624

1207

2889

5.30E−301

sp:[LN:DUR1_YEAST]

[AC:P32528]

[GN:DUR1,2:YBR208C:YBR144

8] [OR:

SACCHAROMYCES

CEREVISIAE

] [SR:,BAKER'S

YEAST] [EC:6.3.4.6:3.5.1.54]

[DE:HYDROLASE,]]

[SP:P32528]

Contig146G

36616525_c2_1119

2641

6767

1464

487

1575

9.20E−162

gp:[GI:e293295:g2208964]

[LN:PACIOAB] [AC:Y10528]

[PN:cyanide insensitive terminal

oxidase] [GN:cioA]

[OR:

Pseudomonas aeruginosa

]

[DE:

P.aeruginosa

cioA and cioB

genes.]

Contig146G

37752_f2_392

2642

6768

891

296

447

3.10E−42

gp:[GI:g2290994] [LN:AF006000]

[AC:AF006000] [PN:unknown]

[OR:

Bordetella pertussis

]

[DE:

Bordetella pertussis

D-3-

phosphoglycerate dehydrogenase

homolog(serA) and Brg1 (brg1)

genes, complete cds.] [NT:orf6:

similar to

P. putida

PobR; putative

IclR type]

Contig146G

3907011_f3_615

2643

6769

495

164

480

1.00E−45

sp:[LN:SOXR_ECOLI]

[AC:P22538] [GN:SOXR:MARC]

[OR:

ESCHERICHIA COLI

]

[DE:SOXR PROTEIN]

[SP:P22538]

Contig146G

3909592_c3_1415

2644

6770

1197

398

324

3.40E−29

pir:[LN:A69778] [AC:A69778]

[PN:metabolite transport protein

homolog ydeG] [GN:ydeG]

[OR:

Bacillus subtilis

]

Contig146G

3909693_f3_741

2645

6771

555

184

336

1.80E−30

pir:[LN:C64897] [AC:C64897]

[PN:probable phosphinothricin N-

acetyltransferase,]

[CL:phosphinothricin N-

acetyltransferase] [OR:

Escherichia

coli

] [EC:2.3.1.—]

Contig146G

3911003_f3_559

2646

6772

249

82

NO-HIT

Contig146G

3912588_f3_740

2647

6773

222

73

NO-HIT

Contig146G

3913958_f1_70

2648

6774

1209

402

233

1.90E−17

sp:[LN:YE05_HAEIN]

[AC:P44180] [GN:HI1405]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

HI1405] [SP:P44180]

Contig146G

3915937_f2_440

2649

6775

822

273

NO-HIT

Contig146G

3928125_c2_1101

2650

6776

2691

896

1919

3.20E−198

sp:[LN:NFRX_AZOVI]

[AC:P36223] [GN:NFRX]

[OR:

AZOTOBACTER

VINELANDII

] [EC:2.7.7.59]

[DE:TRANSFERASE)

(URIDYLYL REMOVING

ENZYME)] [SP:P36223]

Contig146G

3928342_f1_34

2651

6777

1329

442

1176

1.80E−119

sp:[LN:Y326_METJA]

[AC:Q57772] [GN:MJ0326]

[OR:

METHANOCOCCUS

JANNASCHII

]

[DE:HYPOTHETICAL PROTEIN

MJ0326] [SP:Q57772]

Contig146G

3937653_c2_1314

2652

6778

903

300

488

1.40E−46

sp:[LN:BAH_STRHY]

[AC:Q01109] [GN:BAH]

[OR:

STREPTOMYCES

HYGROSCOPICUS

] [EC:3.1.1.—]

[DE:ACETYL-HYDROLASE,]

[SP:Q01109]

Contig146G

3940625_f1_227

2653

6779

198

65

NO-HIT

Contig146G

3941313_f2_288

2654

6780

1026

341

1057

7.20E−107

sp:[LN:PYRB_PSEAE]

[AC:Q59653] [GN:PYRB]

[OR:

PSEUDOMONAS

AERUGINOSA

] [EC:2.1.3.2]

[DE:TRANSCARBAMYLASE)

(ATCASE)] [SP:Q59653]

Contig146G

3944068_f1_121

2655

6781

945

314

253

1.10E−21

pir:[LN:E70398] [AC:E70398]

[PN:dihydrodipicolinate synthase]

[GN:dapA] [OR:

Aquifex aeolicus

]

Contig146G

3944142_c2_1215

2656

6782

468

155

469

1.50E−44

gp:[GI:g2271496] [LN:AF009672]

[AC:AF009672] [PN:unknown]

[OR:Acinctobacter sp. ADP1]

[DE:Acinetobacter sp. ADP1

vanillate demethylase region,

vanillatedemethylase (vanB) and

vanillate demethylase (vanA)

genes, completecds.] [NT:putative

acetyl transferase; ORF2] [RE:

Contig146G

3945907_c3_1417

2657

6783

1500

499

634

4.80E−62

gp:[GI:g3411182] [LN:AF076240]

[AC:AF076240] [PN:putative

regulatory protein MocR]

[GN:mocR] [OR:

Rhizobium

leguminosarum

bv.

viciae

]

[DE:

Rhizobium leguminosarum

plasmid pSyma MocC (mocC),

putativeNADH-inositol

dehydrogenase MocA (mocA),

putative rhizopineperiplasmic

transport protein MocB precursor

(mocB), putativeregulatory protein

MocR (mocR), putative

hydrocarbon oxygenase

MocD(mocD), putative Rieske-like

ferredoxin MocE (mocE), and

putativeferrodoxin reductase MocF

(mocF) genes, complete cds; and

unknowngenes.]

Contig146G

3948518_f2_307

2658

6784

339

112

NO-HIT

Contig146G

3948838_f1_226

2659

6785

873

290

NO-HIT

Contig146G

3957567_f2_343

2660

6786

594

197

NO-HIT

Contig146G

3957808_c1_981

2661

6787

960

319

332

4.80E−30

sp:[LN:YF72_HAEIN]

[AC:P46495] [GN:HI1572]

[OR:

HAEMOPHILUS

INFLUENZAE

] [DE:PUTATIVE

INTEGRASE/RECOMBINASE

HI1572] [SP:P46495]

Contig146G

4002125_f3_589

2662

6788

3162

1053

304

4.20E−30

gp:[GI:g2921771] [LN:AF044506]

[AC:AF044506:U25142]

[PN:VgrG protein]

[OR:

Escherichia coli

]

[DE:

Escherichia coli

strain ECOR-

50 hcp gene, partial cds;

RhsGaccessory genetic element

VgrG protein gene, complete cds;

and coreprotein (rhsG) gene,

partial cds.]

Contig146G

4010262_c1_968

2663

6789

702

233

396

7.90E−37

pir:[LN:F70906] [AC:F70906]

[PN:probable o-methyltransferase]

[GN:Rv0187] [OR:

Mycobacterium

tuberculosis

]

Contig146G

401650_f1_63

2664

6790

252

83

NO-HIT

Contig146G

4020265_c2_1262

2665

6791

1458

485

1286

3.90E−131

sp:[LN:SYC_ECOLI]

[AC:P21888] [GN:CYSS]

[OR:

ESCHERICHIA COLI

]

[EC:6.1.1.16] [DE:(CYSRS)]

[SP:P21888]

Contig146G

4020331_c2_1312

2666

6792

189

62

NO-HIT

Contig146G

4023963_f2_414

2667

6793

453

150

NO-HIT

Contig146G

4070337_f2_329

2668

6794

918

305

442

1.10E−41

pir:[LN:E64818]

[AC:E64818:I69618]

[PN:probable membrane protein

ybiF] [GN:ybiF] [OR:

Escherichia

coli

]

Contig146G

4072338_c2_1147

2669

6795

813

270

350

5.90E−32

pir:[LN:A70719] [AC:A70719]

[PN:probable enoyl-coA

hydratase] [GN:echA7] [CL:enoyl-

CoA hydratase homology]

[OR:

Mycobacterium tuberculosis

]

Contig146G

4079058_f1_197

2670

6796

1101

366

871

3.70E−87

sp:[LN:TAUA_ECOLI]

[AC:Q47537:P77630]

[GN:TAUA:SSIA]

[OR:

ESCHERICHIA COLI

]

[DE:INDUCED PROTEIN 1)

(SSI1)] [SP:Q47537:P77630]

Contig146G

40902_c1_1041

2671

6797

837

278

370

4.50E−34

pir:[LN:C70814] [AC:C70814]

[PN:hypothetical protein Rv0851c]

[GN:Rv0851c]

[OR:

Mycobacterium tuberculosis

]

Contig146G

40937_f2_385

2672

6798

1299

432

632

7.80E−62

pir:[LN:H71006] [AC:H71006]

[PN:probable ATP-binding

transport protein] [GN:PH1350]

[CL:inner membrane protein

malK:ATP-binding cassette

homology] [OR:

Pyrococcus

horikoshii

]

Contig146G

4094013_f3_575

2673

6799

600

199

269

2.30E−23

gp:[GI:g4206094] [LN:AF091240]

[AC:AF091240] [PN:unknown]

[OR:Acinctobacter sp. ADP1]

[DE:Acinetobacter sp. ADP1

transposon Tn5613 unknown gene,

completecds.] [NT:ORF1]

Contig146G

4095312_f2_255

2674

6800

1368

455

1749

3.40E−180

sp:[LN:GUD1_ECOLI]

[AC:P76637:Q46914]

[GN:YGCX] [OR:

ESCHERICHIA

COLI

] [EC:4.2.1.40]

[DE:PROBABLE GLUCARATE

DEHYDRATASE 1, (GDH)]

[SP:P76637:Q46914]

Contig146G

4101638_c2_1145

2675

6801

1185

394

1227

6.90E−125

sp:[LN:IVD_HUMAN]

[AC:P26440] [GN:IVD]

[OR:

HOMO SAPIENS

]

[EC:1.3.99.10]

[DE:ISOVALERYL-COA

DEHYDROGENASE

PRECURSOR, (IVD)]

[SP:P26440]

Contig146G

4103202_f3_560

2676

6802

816

271

363

2.50E−33

sp:[LN:PROC_PSEAE]

[AC:P22008] [GN:PROC]

[OR:

PSEUDOMONAS

AERUGINOSA

] [EC:1.5.1.2]

[DE:PYRROLINE-5-

CARBOXYLATE REDUCTASE,

(P5CR) (P5C REDUCTASE)]

[SP:P22008]

Contig146G

4105262_c1_767

2677

6803

219

72

NO-HIT

Contig146G

4114662_f1_61

2678

6804

1158

385

NO-HIT

Contig146G

4115943_f1_185

2679

6805

951

316

757

4.40E−75

gp:[GI:d1037196:g4062979]

[LN:AB017138] [AC:AB017138]

[PN:epsilon subunit of malonate

decarboxylase] [GN:mdcH]

[OR:

Pseudomonas putida

]

[SR:

Pseudomonas putida

DNA]

[DE:

Pseudomonas putida

malonate

decarboxylase gene cluster (mdcA,

mdcB,mdcC, mdcD, mdcE, mdcG,

mdcH, mdcL and mdcM genes),

complete cds.] [NT:malonyl-

CoA:acyl carrier protein

transacylase;]

Contig146G

411652_f2_276

2680

6806

594

197

615

4.90E−60

sp:[LN:RNH2_HAEIN]

[AC:P43808:P94808]

[GN:RNHB:HI1059]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:3.1.26.4]

[DE:RIBONUCLEASE HII,

(RNASE HII)]

[SP:P43808:P94808]

Contig146G

4117202_f3_602

2681

6807

504

167

158

1.30E−11

gp:[GI:g2708665] [LN:AF037441]

[AC:AF037441] [PN:putative 17.8

kDa protein] [GN:eip18]

[OR:

Edwardsiella ictaluri

]

[DE:

Edwardsiella ictaluri

putative

18.8 kDa protein (eip19),

putative 17.8 kDa protein (eip18),

putative 54.5 kDa protein (eip55),

andputative 19.5 kDa protein

(eip20) genes, complete cds.]

[NT:EIP18; possibly antigenic to

catfish]

Contig146G

4180432_c1_1002

2682

6808

633

210

264

7.70E−23

sp:[LN:YRHP_BACSU]

[AC:O05406] [GN:YRHP]

[OR:

BACILLUS SUBTILIS

]

[DE:HYPOTHETICAL 23.4 KD

PROTEIN IN AAPA-SIGV

INTERGENIC REGION]

[SP:O05406]

Contig146G

4181558_f1_173

2683

6809

963

320

214

4.40E−25

pir:[LN:S75216] [AC:S75216]

[PN:regulatory components of

sensory transduction

system:protein slr1909:protein

slr1909] [CL:ompR

protein:response regulator

homology] [OR:Synechocystis sp.]

[SR:PCC 6803,, PCC 6803]

[SR:PCC 6803,]

Contig146G

4297303_c2_1118

2684

6810

276

91

NO-HIT

Contig146G

4297328_c3_1375

2685

6811

1101

366

1426

5.70E−146

pir:[LN:164150] [AC:164150]

[PN:probable GTP-binding protein

HI0393] [CL:yeast probable purine

nucleotide-binding protein

YBR025c] [OR:

Haemophilus

influenzae

]

Contig146G

4300937_c3_1503

2686

6812

231

76

NO-HIT

Contig146G

4302260_f3_642

2687

6813

627

208

462

8.10E−44

pir:[LN:G64892]

[AC:G64892:S55810:S55808]

[PN:[acyl-carrier-protein]

phosphodiesterase, acpD]

[GN:acpD] [CL:acyl carrier protein

phosphodiesterase]

[OR:

Escherichia coli

]

[EC:3.1.4.14]

Contig146G

4303193_f1_112

2688

6814

1029

342

NO-HIT

Contig146G

4307917_c1_877

2689

6815

189

62

NO-HIT

Contig146G

4335032_c1_1011

2690

6816

585

194

852

3.80E−85

gp:[GI:d1032426:g3298355]

[LN:AB010689] [AC:AB010689]

[PN:AhpC] [GN:ahpC]

[OR:

Pseudomonas putida

]

[SR:

Pseudomonas putida

(strain:TOL) DNA]

[DE:

Pseudomonas putida

gene for

AhpC, AhpF, complete cds.]

Contig146G

4335308_c1_875

2691

6817

921

306

453

7.20E−43

gp:[GI:g1139588] [LN:HIU20964]

[AC:U20964] [PN:ORF2]

[OR:

Haemophilus influenzae

]

[DE:

Haemophilus influenzae

DNA

topoisomerase I (topA) gene,

completecds, putative pyridine

nucleotide transhydrogenase beta

subunit(pntB) gene, partial cds,

ORF2 and ORF3 genes, complete

cds andputative threonyl-tRNA

synthetase (thrS) gene, partial cds.]

[NT:ORF2 has a predicted

molecular weight of 34.5kd and]

Contig146G

4344093_f1_186

2692

6818

426

141

425

6.70E−40

gp:[GI:d1037197:g4062980]

[LN:AB017138] [AC:AB017138]

[PN:malonate transporter]

[GN:mdcL] [OR:

Pseudomonas

putida

] [SR:

Pseudomonas putida

DNA] [DE:

Pseudomonas putida

malonate decarboxylase gene

cluster (mdcA, mdcB,mdcC,

mdcD, mdcE, mdcG, mdcH, mdcL

and mdcM genes), complete cds.]

Contig146G

4344193_c1_754

2693

6819

384

127

370

4.50E−34

pir:[LN:A70021] [AC:A70021]

[PN:glycine cleavage system

protein H homolog yusH]

[GN:yusH] [CL:glycine cleavage

system protein H:lipoyl/biotin-

binding homology] [OR:

Bacillus

subtilis

]

Contig146G

4344193_f1_198

2694

6820

804

267

646

2.60E−63

sp:[LN:TAUB_ECOLI]

[AC:Q47538] [GN:TAUB:SSIB]

[OR:

ESCHERICHIA COLI

]

[DE:TAURINE TRANSPORT

ATP-BINDING PROTEIN TAUB]

[SP:Q47538]

Contig146G

4353433_f1_184

2695

6821

612

203

399

3.80E−37

gp:[GI:d1037195:g4062978]

[LN:AB017138] [AC:AB017138]

[PN:holo-acyl carrier protein]

[GN:mdcG] [FN:involved in

formation of the holo-acyl carrier]

[OR:

Pseudomonas putida

]

[SR:

Pseudomonas putida

DNA

[DE:

Pseudomonas putida

malonate

decarboxylase gene cluster (mdcA,

mdcB,mdcC, mdcD, mdcE, mdcG,

mdcH, mdcL and mdcM genes),

complete cds.]

Contig146G

4410927_c1_1025

2696

6822

513

170

154

3.50E−11

gp:[GI:g940146] [LN:TMU30501]

[AC:U30501] [OR:

Thermotoga

maritima

] [DE:

Thermotoga

maritima

CheA (cheA), CheW

(cheW) and CheY (cheY)

genes,complete cds.] [NT:orf2;

Method: conceptual translation

supplied by]

Contig146G

4415887_f1_40

2697

6823

1170

389

824

3.50E−82

gp[GI:g2459964] [LN:AF010189]

[AC:AF010189] [PN:HisX]

[GN hisX] [OR:

Pseudomonas

stutzeri

] [DE:

Pseudomonas

stutzeri

HflC (hflC) gene, partial

cds; HisX (hisX)gene, complete

cds; and PurA (purA) gene, partial

cds.]

Contig146G

4423377_c1_770

2698

6824

1017

338

1071

2.40E−108

sp:[LN:BIOB_ECOLI]

[AC:P12996] [GN:BIOB]

[OR:

ESCHERICHIA COLI

]

[EC:2.8.1.6] [DE:BIOTIN

SYNTHASE, BIOTIN

SYNTHASE)] [SP:P12996]

Contig146G

4453213_f3_541

2699

6825

1116

371

299

6.00E−31

gp:[GI:g4154707] [LN:AE001457]

[AC:AE001457:AE001439]

[PN:BETA-KETOACYL-ACP

SYNTHASE III] [GN:fabH]

[OR:

Helicobactcr pylori

J99]

[DE:

Helicobacter pylori

, strain J99

section 18 of 132 of the

completegenome.] [NT:similar to

H. pylori

26695 gene HP0202]

Contig146G

4474040_f2_421

2700

6826

3483

1160

711

1.90E−69

pir:[LN:C70565] [AC:C70565]

[PN:hypothetical protein Rv3454]

[GN:Rv3454] [OR:

Mycobacterium

tuberculosis

]

Contig146G

4485625_c1_843

2701

6827

519

172

165

2.40E−12

gp:[GI:g940146] [LN:TMU30501]

[AC:U30501] [OR:

Thermotoga

maritima

] [DE:

Thermotoga

maritima

CheA (cheA), CheW

(cheW) and CheY (cheY)

genes,complete cds.] [NT:orf2;

Method: conceptual translation

supplied by]

Contig146G

4491718_f3_730

2702

6828

852

283

439

2.20E−41

sp:[LN:GLTJ_ECOLI]

[AC:P41074] [GN:GLTJ]

[OR:

ESCHERICHIA COLI

]

[DE:GLUTAMATE/ASPARTATE

TRANSPORT SYSTEM

PERMEASE PROTEIN GLTJ]

[SP:P41074]

Contig146G

4501027_c2_1264

2703

6829

996

331

156

1.10E−12

pir:[LN:B69922] [AC:B69922]

[PN:conserved hypothetical

protein yorA] [GN:yorA]

[OR:

Bacillus subtilis

]

Contig146G

4509678_f1_171

2704

6830

2148

715

2407

6.30E−250

gp:[GI:g1778585] [LN:PPU82622]

[AC:U82622] [PN:stationary-

phase inducible catalase C]

[GN:catC] [OR:

Pseudomonas

putida

] [DE:

Pseudomonas putida

stationary-phase inducible catalase

C (catC)gene, complete cds.]

Contig146G

4511025_f3_510

2705

6831

1038

345

430

2.00E−40

sp:[LN:YR12_MYCTU]

[AC:P71663]

[GN:MTCY21B4.12]

[OR:

MYCOBACTERIUM

TUBERCULOSIS

]

[DE:HYPOTHETICAL

TRANSCRIPTIONAL

REGULATOR CY21B4.12]

[SP:P71663]

Contig146G

453_c3_1554

2706

6832

231

76

NO-HIT

Contig146G

4548577_f3_679

2707

6833

456

151

463

6.30E−44

gp:[GI:e1358530:g3980226]

[LN:SCO131213] [AC:AJ131213]

[PN:putative transcriptional

regulator] [GN:lrpA] [FN:similar

to leucine responsive proteins]

[OR:

Streptomyces coelicolor

]

[DE:

Streptomyces coelicolor

A3(2) mutY (partial), sigE, cseB,

cseC andlrpA genes and ORF202

and ORF277.]

Contig146G

4554693_c3_1590

2708

6834

636

211

289

1.70E−25

pir:[LN:I40180] [AC:I40180]

[PN:hypothetical protein 2]

[CL:hypothetical protein b0838]

[OR:

Pseudomonas cepacia

]

Contig146G

4567807_f3_486

2709

6835

1104

367

1023

2.90E−103

gp:[GI:e1331954:g4106585]

[LN:YP102KB] [AC:AL031866]

[GN:aruF] [OR:

Yersinia pestis

]

[DE:

Yersinia pestis

102 kbases

unstable region: from 1 to

119443.] [NT:ORF17, len: 350.

aruF, probable]

Contig146G

4688133_f1_230

2710

6836

603

200

180

6.10E−14

gp:[GI:d1032534;g3318590]

[LN:AB015670] [AC:AB015670]

[OR:Bacillus sp.] [SR:Bacillus sp.

DNA] [DE:Bacillus sp. genes for

CDase, CGTase, MBP and 15

ORFs, partial andcomplete cds.]

[NT:A2-5a orf21; hypothetical

protein]

Contig146G

4688140_f3_627

2711

6837

213

70

NO-HIT

Contig146G

4691068_f3_593

2712

6838

549

182

NO-HIT

Contig146G

4697156_f2_281

2713

6839

789

262

234

1.20E−19

pir:[LN:S75639] [AC:S75639]

[PN:hypothetical protein slr1971]

[OR:Syncchocystis sp.] [SR:PCC

6803, PCC 6803] [SR:PCC 6803,]

Contig146G

4698402_c3_1611

2714

6840

1569

522

1071

2.40E−108

pir:[LN:D70861] [AC:D70861]

[PN:probable monoxygenase]

[GN:Rv3049c]

[OR:

Mycobacterium tuberculosis

]

Contig146G

4723137_f2_377

2715

6841

1314

437

1472

7.60E−151

gp:[GI:e242887:g2764833]

[LN:ECPAA] [AC:X97452]

[PN:coenzyme A ligase] [GN:K]

[OR:

Escherichia coli

] [DE:

E.coli

cluster for phenylacetic acid

degradation.] [NT:putative]

Contig146G

4740660_f3_564

2716

6842

369

122

NO-HIT

Contig146G

4859462_c3_1581

2717

6843

1047

348

1559

4.60E−160

sp:[LN:BENC_ACICA]

[AC:P07771] [GN:BENC]

[OR:

ACINETOBACTER

CALCOACETICUS

]

[EC:1.18.1.3]

[DE:FERREDOXIN;

FERREDOXIN--NAD(+)

REDUCTASE,]] [SP:P07771]

Contig146G

4869033_f2_373

2718

6844

504

167

464

4.90E−44

gp:[GI:e242880:g2764826]

[LN:ECPAA] [AC:X97452]

[GN:D] [OR:

Eschcrichia coli

]

[DE:

E.coli

cluster for phenylacetic

acid degradation.] [SP:P76080]

Contig146G

4869377_f3_645

2719

6845

1176

391

157

1.60E−08

sp:[LN:SAOX_BACSP]

[AC:P40859] [OR:BACILLUS

SP] [EC:1.5.3.1]

[DE:SARCOSINE OXIDASE,]

[SP:P40859]

Contig146G

4875053_f3_594

2720

6846

327

108

NO-HIT

Contig146G

4875192_c3_1589

2721

6847

759

252

519

7.30E−50

sp:[LN:YGGH_ECOLI]

[AC:P32049] [GN:YGGH]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 27.3 KD

PROTEIN IN ANSB-MUTY

INTERGENIC REGION (F239)]

[SP:P32049]

Contig146G

4881266_f3_601

2722

6848

363

120

237

5.60E−20

pir:[LN:E69868] [AC:E69868]

[PN:conserved hypothetical

protein ykvN] [GN:ykvN]

[CL:conserved hypothetical

protein MTH1285] [OR:

Bacillus

subtilis

]

Contig146G

4881943_c3_1556

2723

6849

474

157

NO-HIT

Contig146G

4883250_f1_692

2724

6850

441

146

169

9.00E−13

sp:[LN:YWBH_BACSU]

[AC:P39591] [GN:YWBH:IPA-

23R] [OR:

BACILLUS SUBTILIS

]

[DE:HYPOTHETICAL 14.3 KD

PROTEIN IN EPR-GALK

INTERGENIC REGION]

[SP:P39591]

Contig146G

4883562_f3_553

2725

6851

420

139

123

6.70E−08

gp:[GI:e1132704;g2408054]

[LN:SPAC29B12] [AC;Z99164]

[PN:hypothetical protein]

[GN:SPAC29B12.13]

[OR:

Schizosaccharomyces pombe

]

[SR:fission yeast] [DE:

S.pombe

chromosome I cosmid c29B12.]

[NT:SPAC29B12.13, unknown,

len:13]

Contig146G

48842_c3_1371

2726

6852

777

258

250

8.00E−21

sp:[LN:SOXA_RHOSO]

[AC:P54995] [GN:SOXA;DSZA]

[OR:RHODOCOCCUS SP]

[DE;DIBENZOTHIOPRENE

DESULFURIZATION ENZYME

A] [SP:P54995]

Contig146G

4885943_f1_159

2727

6853

816

271

NO-HIT

Contig146G

4890933_c3_1617

2728

6854

1215

404

965

4.00E−97

pir:[LN:C70505] [AC:C70505]

[PN:probable acyl-coa

dehydrogenase] [GN:fadE20]

[CL:acyl-CoA dehydrogenase]

[OR:

Mycobacterium tuberculosis

]

Contig146G

4898465_f2_358

2729

6855

594

197

104

0.00077

pir:[LN:A40215] [AC:A40215]

[PN:TcD antigen]

[OR:

Trypanosoma cruzi

]

Contig146G

4901675_f2_314

2730

6856

1347

448

390

3.40E−36

sp:tLN;YE09_HAEIN]

[AC;P44183] [GN:HI1409]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

HI1409] [SP:P44183]

Contig146G

4941000_c1_874

2731

6857

864

287

1149

1.30E−116

pir:[LN:A36893] [AC:A36893]

[PN:transcription activator pobR]

[GN:pobR] [OR:

Acinetobacter

calcoaceticus

]

Contig146G

4948442_f3_597

2732

6858

1230

409

668

1.20E−65

gp:[GI:d1039053:g4512350]

[LN:AB011836] [AC:AB011836]

[GN:transposase] [OR:

Bacillus

halodurans

] [SR:

Bacillus

halodurans

(strain:C-125,

isolate:xylanase producer) DNA]

[DE:

Bacillus halodurans

C-125

genomic DNA, clone

ALBAC003.] [NT:similar to

Bordetella paraperlussis

transposase for]

Contig146G

4957802_c3_1414

2733

6859

708

235

NO-HIT

Contig146G

4960275_f3_711

2734

6860

1896

631

396

2.20E−36

pir:[LN:F69989] [AC:F69989]

[PN:conserved hypothetical

protein ytcJ] [GN:ytcJ]

[OR:

Bacillus subtilis

]

Contig146G

4970063_c2_1339

2735

6861

735

244

NO-HIT

Contig146G

4970633_c3_1450

2736

6862

348

115

237

5.60E−20

sp:[LN:HMGL_PSEMV]

[AC:P13703] [GN:MVAB]

[OR:

PSEUDOMONAS

MEVALONII

] [EC:4.1.3.4]

[DE:(3-HYDROXY-3-

METHYLGLUTARATE-COA

LYASE)] [SP:P13703]

Contig146G

500625_c2_1090

2737

6863

609

202

106

0.0005

pir:[LN:E70476] [AC:E70476]

[PN:2-

acylglycerophosphoethanolamine

acyltransferase] [GNs]

[OR:

Aquifex aeolicus

]

Contig146G

5079662_c1_787

2738

6864

369

122

181

4.80E−14

sp:[LN:YGAH_ECOLI]

[AC:P43667:P77323]

[GN:YGAH] [OR:

ESCHERICHIA

COLI

] [DE:HYPOTHETICAL

12.0 KD PROTEIN IN PROX-

EMRR INTERGENIC REGION]

[SP:P43667:P77323]

Contig146G

5086532_f2_387

2739

6865

1197

398

1069

3.80E−108

gp:[GI:g1763079]

[LN:STU69493] [AC:U69493]

[PN:PhnW] [FN:2-

aminoethylphosphonate:pyruvate]

[OR:

Salmonella typhimurium

]

[DE:

Salmonella typhimurium

ThiJ

and Orf1 genes, partial cds, and

PhnX,PhnW, PhnR, PhnS, PhnT,

PhnU and PhnV genes, complete

cds.]

Contig146G

509701_c1_1063

2740

6866

522

173

244

1.00E−20

gp:[GI:g3128284] [LN:AF010496]

[AC:AF010496] [PN:potential

regulatory protein]

[OR:

Rhodobacter capsulatus

]

[DE:

Rhodobacter capsulatus

strain

SB1003, partial genome.]

Contig146G

5097302_f3_693

2741

6867

669

222

250

2.40E−21

sp:[LN:PAIB_BACSU]

[AC:P21341] [GN:PAIB]

[OR:

BACILLUS SUBTILIS

]

[DE:PROTEASE SYNTHASE

AND SPORULATION

NEGATIVE REGULATORY

PROTEIN PAI 2] [SP:P21341]

Contig146G

5116452_f3_731

2742

6868

744

247

931

1.60E−93

sp:[LN:GLTL_ECOLI]

[AC:P41076] [GN:GLTL]

[OR:

ESCHERICHIA COLI

]

[DE:GLUTAMATE/ASPARTATE

TRANSPORT ATP-BINDING

PROTEIN GLTL] [SP:P41076]

Contig146G

5119028_f3_610

2743

6869

957

318

140

4.10E−09

pir:[LN:F69755] [AC:F69755]

[PN:L-alanoyl-D-glutamate

peptidase homolog ycdD]

[GN:ycdD] [OR:

Bacillus subtilis

]

Contig146G

5165931_f2_290

2744

6870

1419

472

235

8.40E−19

gp:[GI:g2641145] [LN:AF030977]

[AC:AF030977:UI1759:M90461]

[PN:putative outer membrane

porin] [GN:ompA] [OR:

Vibrio

cholerae

] [DE:

Vibrio cholerae

glutamyl tRNA synthetase (gltX)

gene, partial cds;and putative outer

membrane porin (ompA),

vibriobactin receptorprecursor

(viuA), and ViuB protein (viuB)

genes, complete cds.] [NT:OmpA;

similar to

E. coli

OmpA]

Contig146G

5213202_f3_568

2745

6871

813

270

369

5.80E−34

pir:[LN:B64122] [AC:B64122]

[PN:hypothetical protein HI1407]

[OR:

Haemophilus influenzae

]

Contig146G

524182_c3_1612

2746

6872

1686

561

1152

6.10E−117

pir:[LN:F70736] [AC:F70736]

[PN:probable choD protein]

[GN:choD] [OR:

Mycobacterium

tuberculosis

]

Contig146G

5250128_f1_12

2747

6873

726

241

286

3.60E−25

gp:[GI:e313067:g1945709]

[LN:BSZ94043] [AC:Z94043]

[PN:hypothetical protein]

[GN:yvfI] [OR:

Bacillus subtilis

]

[DE:

B.subtilis

genomic DNA

fragment (88 kb).] [NT:probable

transcriptional regulator (GntR

family)]

Contig146G

5254760_c1_777

2748

6874

195

64

NO-HIT

Contig146G

5268828_c3_1394

2749

6875

1479

492

792

8.60E−79

sp:[LN:YWOE_BACSU]

[AC:P94575] [GN:YWOE]

[OR:

BACILLUS SUBTILIS

]

[DE:HYPOTHETICAL 54.0 KD

PROTEIN IN NRGA-USD

INTERGENIC REGION]

[SP:P94575]

Contig146G

5287566_c3_1379

2750

6876

405

134

225

1.00E−18

gp:[GI:g3212220] [LN:U32819]

[AC:U32819:L42023] [PN:

H.

influenzae

predicted coding region

HI1388.1] [GN:HI1388.1]

[OR:

Haemophilus influenzae

Rd]

[DE:

Haemophilus influenzae

Rd

section 134 of 163 of the

completegenome.] [NT:Brute

Force ORF; identified by

GeneMark; putative]

Contig146G

5351407_c2_1104

2751

6877

1329

442

730

3.20E−72

sp:[LN:GLTT_BACCA]

[AC:P24944] [GN:GLTT]

[OR:

BACILLUS

CALDOTENAX

] [DE:PROTEIN)]

[SP:P24944]

Contig146G

5879552_f1_640

2752

6878

411

136

277

7.10E−24

gp:[GI:e1313496:g3367745]

[LN:SC3A7] [AC:AL031155]

[PN:3-oxoadipate enol-lactone]

[GN:SC3A7.07]

[OR:

Streptomyccs coelicolor

]

[DE:

Streptomyces coelicolor

cosmid 3A7.] [NT:SC3A7.07,

probable 3-oxoadipate enol-

lactone]

Contig146G

5897943_c2_1093

2753

6879

1236

411

409

3.30E−38

gp:[GI:g2582423] [LN:AF026067]

[AC:AF026067] [PN:putative

FMNH2-dependent

monooxygenase] [GN:slfC]

[OR:

Pseudomonas aeruginosa

]

[DE:

Pseudomonas aeruginosa

putative reductase (slfA),

putativeFMNH2-dependent

monooxygenase (slfB), and

putative FMNH2-

dependentmonooxygenase (slfC)

genes, complete cds.]

Contig146G

5899135_c1_773

2754

6880

993

330

560

3.30E−54

sp:[LN:YYAM_BACSU]

[AC:P37511] [GN:YYAM]

[OR:

BACILLUS SUBTILIS

]

[DE:HYPOTHETICAL 32.9 KD

PROTEIN IN TETB-EXOA

INTERGENIC REGION]

[SP:P37511]

Contig146G

5987687_f3_683

2755

6881

858

285

730

3.20E−72

pir:[LN:C64666] [AC:C64666]

[PN:glutamine transport protein

glnQ] [GN:glnQ] [CL:inner

membrane protein malK:ATP-

binding cassette homology]

[OR:

Helicobacter pylori

]

Contig146G

5995427_f3_624

2756

6882

786

261

681

5.00E−67

sp:[LN:PAAF_ECOLI]

[AC:P76082:P78288:O53014]

[GN:PAAF] [OR:

ESCHERICHIA

COLI

] [EC:4.2.1.17]

[DE:PROBABLE ENOYL-COA

HYDRATASE PAAF,]

[SP:P76082:P78288:O53014]

Contig146G

6015692_f3_538

2757

6883

252

83

NO-HIT

Contig146G

6016078_c1_751

2758

6884

504

167

114

1.50E−05

gp:[GI:g2645696] [LN:AF031940]

[AC:AF031940] [PN:hypothetical

protein] [OR:

Sinorhizobium

meliloti

] [DE:

Sinorhizobium

meliloti

alcohol dehydrogenase

(adhA) gene, completecds.]

[NT:orf1]

Contig146G

6031502_c1_825

2759

6885

954

317

503

3.60E−48

sp:[LN:YWBI_BACSU]

[AC:P39592] [GN:YWBI:IPA-

24D] [OR:

BACILLUS SUBTILIS

]

[DE:HYPOTHETICAL

TRANSCRIPTIONAL

REGULATOR IN THIK-EPR

INTERGENIC REGION]

[SP:P39592]

Contig146G

6048187_c3_1358

2760

6886

657

218

361

4.10E−33

gp:[GI:g4335906] [LN:AF055307]

[AC:AF055307] [PN:F17A

fimbrial subunit precursor]

[GN:f17A] [OR:

Escherichia coli]

[DE:

Escherichia coli

CK210 F17A

fimbrial subunit precursor (f17A)

gene,complete cds.]

Contig146G

6070327_f2_287

2761

6887

345

114

NO-HIT

Contig146G

6111311_f2_265

2762

6888

1389

462

1968

2.10E−203

gp:[GI:g2271501] [LN:AF009672]

[AC:AF009672] [PN:unknown]

[OR:Acinetobacter sp. ADP1]

[DE:Acinctobacter sp. ADP1

vanillate demethylase region,

vanillatedemethylase (vanB) and

vanillate demethylase (vanA)

genes, completecds.] [NT:putative

transport protein; ORF5]

Contig146G

6118757_c1_791

2763

6889

3609

1202

2821

8.50E−294

sp:[LN:DP3A_SALTY]

[AC:P14567] [GN:DNAE:POLC]

[OR:

SALMONELLA

TYPHIMURIUM

] [EC:2.7.7.7]

[DE:DNA POLYMERASE III,

ALPHA CHAIN,] [SP:P14567]

Contig146G

6148505_c2_1311

2764

6890

975

324

184

5.50E−12

pir:[LN:H70882] [AC:H70882]

[PN:hypothetical protein Rv2777c]

[GN:Rv2777c]

[OR:

Mycobacterium tuberculosis

]

Contig146G

625281_f1_122

2765

6891

1128

375

272

1.60E−23

pir:[LN:B71184] [AC:B71184]

[PN:probable sarcosine oxidase]

[GN:PH1751] [OR:

Pyrococcus

horikoshii

]

Contig146G

626580_f2_347

2766

6892

510

169

232

1.90E−19

pir:[LN:E71175] [AC:E71175]

[PN:hypothetical protein PH0601]

[GN:PH0601] [CL:conserved

hypothetical protein MJ0080]

[OR:Pyrococcus horikoshii]

Contig146G

629800_c1_859

2767

6893

465

154

124

5.30E−08

gp:[GI:e1247712:g2815353]

[LN:SC2E9] [AC:AL021530]

[PN:hypothetical protein

SC2E9.08] [GN:SC2E9.08]

[OR:

Streptomyces coelicolor

]

[DE:

Streptomyccs coelicolor

cosmid 2E9.] [NT:SC2E9.08,

unknown, len: 194]

Contig146G

6376513_f1_75

2768

6894

783

260

NO-HIT

Contig146G

6376557_c1_810

2769

6895

1503

500

1074

1.10E−108

pir:[LN:B64896] [AC:B64896]

[PN:hypothetical protein b1439]

[CL:hypothetical protein b1439]

[OR:

Eschcrichia coli

]

Contig146G

6441276_c3_1499

2770

6896

1635

544

1331

6.60E−136

pir:[LN:S27612] [AC:S27612]

[PN:ketoglutarate semialdehyde

dehydrogenase,]

[OR:

Pseudomonas putida

]

[EC:1.2.1.—]

Contig146G

648557_f3_517

2771

6897

537

178

NO-HIT

Contig146G

651462_c1_967

2772

6898

615

204

NO-HIT

Contig146G

6679562_c3_1364

2773

6899

201

66

NO-HIT

Config146G

6742327_f3_572

2774

6900

390

129

NO-HIT

Contig146G

6836625_f2_412

2775

6901

1770

589

1419

3.10E−145

pir:[LN:D69187] [AC:D69187]

[PN:long-chain-fatty-acid-CoA

ligase] [GN:MTH6S7] [CL:acetate-

—CoA ligase homology]

[OR:

Methanobacterium

thermoautotrophicum

]

Contig146G

6909468_f3_626

2776

6902

645

214

189

1.40E−14

sp:[LN:YBEQ_ECOLI]

[AC:P77234] [GN:YBEQ]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 37.3 KD

PROTEIN IN LEUS-GLTL

INTERGENIC REGION]

[SP:P77234]

Contig146G

7062800_c3_1482

2777

6903

621

206

NO-HIT

Contig146G

7062962_f3_503

2778

6904

465

154

146

2.50E−10

sp:[LN:YX18_MYCTU]

[AC:Q10810] [GN:MTCY274.18]

[OR:

MYCOBACTERIUM

TUBERCULOSIS

]

[DE:HYPOTHETICAL

TRANSCRIPTIONAL

REGULATOR CY274.18]

[SP:Q10810]

Contig146G

7079467_c2_1096

2779

6905

1110

369

726

8.50E−72

sp:[LN:ABC_HAEIN]

[AC:P44785] [GN:ABC:HI0621]

[OR:

HAEMOPHILUS

INFLUENZAE

] [DE:ATP-

BINDING PROTEIN ABC]

[SP:P44785]

Contig146G

7212962_f3_720

2780

6906

432

143

384

1.50E−35

pir:[LN:A69195] [AC:A69195]

[PN:transcription regulator]

[GN:MTH711] [CL:hypthetical

protein YCL033c]

[OR:

Methanobacterium

thermoautotrophicum

]

Contig146G

7303308_c2_1247

2781

6907

747

248

NO-HIT

Contig146G

7633_c1_761

2782

6908

1140

379

979

1.30E−98

sp:[LN:TRMA_ECOLI]

[AC:P23003] [GN:TRMA]

[OR:

ESCHERICHIA COLI

]

[EC:2.1.1.35]

[DE:METHYLTRANSFERASE)

(RUMT)] [SP:P23003]

Contig146G

7807_c1_762

2783

6909

252

83

NO-HIT

Contig146G

781252_f1_561

2784

6910

372

123

NO-HIT

Contig146G

782952_c1_864

2785

6911

909

302

445

5.10E−42

gp:[GI:g2290994] [LN:AF006000]

[AC:AF006000] [PN:unknown]

[OR:

Bordetella pertussis

]

[DE:

Bordetella pertussis

D-3-

phosphoglycerate dehydrogenase

homolog(serA) and Brg1 (brg1)

genes, complete cds.] [NT:orf6;

similar to

P. putida

PobR; putative

IclR type]

Contig146G

801391_c3_1624

2786

6912

1413

470

1522

3.80E−156

sp:[LN:GUDT_ECOLI]

[AC:Q46916] [GN:YGCZ]

[OR:

ESCHERICHIA COLI

]

[DE:PROBABLE GLUCARATE

TRANSPORTER] [SP:Q46916]

Contig146G

828532_c3_1444

2787

6913

192

63

NO-HIT

Contig146G

832336_f1_84

2788

6914

288

95

NO-HIT

Contig146G

839135_c3_1438

2789

6915

237

78

143

5.10E−10

pir:[LN:A26892] [AC:A26892]

[PN:Mopa box protein] [OR:

Mus

musculus

] [SR:, house mouse]

Contig146G

860715_c3_1508

2790

6916

864

287

354

2.20E−32

gp:[GI:e1359131:g4007673]

[LN:SC4B5] [AC:AL034443]

[PN:LysR-type transcriptional

regulator] (GN:SC4B5.05c]

[OR:

Streptomyces coelicolor

]

[DE:

Streptomyces coelicolor

cosmid 4B5.] [NT:SC4B5.05c,

LysR-type transcriptional

regulator,]

Contig146G

89008_c3_1632

2791

6917

756

251

177

1.30E−13

gp:[GI:e1319710:g3581869]

[LN:SCI35] [AC:AL031541]

[PN:putative transcriptional

regulator] [GN:SCI35.36]

[OR:

Streptomyces coelicolor

]

[DE:

Streptomyces coelicolor

cosmid 135.] [NT:SCI35.36,

probable transcriptional regulator,

len:]

Contig146G

908592_c1_1012

2792

6918

228

75

NO-HIT

Contig146G

915643_f3_744

2793

6919

759

252

323

4.30E−29

sp:[LN:YIGE_ECOLI]

[AC:P27840:P27839:Q47713:P76

760:P76759] [GN:YIGE]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 27.9 KD

PROTEIN IN UVRD-CORA

INTERGENIC REGION]

[SP:P27840:P27839:Q47713:P767

60:P76759]

Contig146G

969388_f1_9

2794

6920

309

102

NO-HIT

Contig146G

970052_c3_1350

2795

6921

507

168

NO-HIT

Contig146G

974200_c3_1432

2796

6922

186

61

NO-HIT

Contig146G

976063_f2_361

2797

6923

447

148

146

2.50E−10

sp:[LN:YOAF_ECOLI]

[AC:P76244] [GN:YOAF]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 8.9 KD

PROTEIN IN GAPA-RND

INTERGENIC REGION]

[SP:P76244]

Contig146G

978327_c3_1372

2798

6924

891

296

423

1.10E−39

gp:[GI:e1288207:g3087788]

[LN:LPN5668] [AC:AJ005668]

[PN:29 kDa immunogenic protein]

[OR:

Legionella pneumophila

]

[DE:

Legionella pneumophila

gene

encoding a 29 kDa immunogenic

protein.]

Contig146G

984625_f2_304

2799

6925

201

66

NO-HIT

Contig146G

9851558_f2_354

2800

6926

2955

984

124

7.70E−14

gp:[GI:e1252197:g2897626]

[LN:LP22KBICM] [AC:Y15044]

[PN:IcmF protein] [GN:icmF]

[OR:

Legionella pneumophila

]

[DE:

Legionella pneumophila

22kB

DNA fragment from icm gene

cluster.]

Contig146G

995385_f3_681

2801

6927

300

99

167

1.50E−12

sp:[LN:YJDJ_ECOLI]

[AC:P39274] [GN:YJDJ]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 10.5 KD

PROTEIN IN DCUB-LYSU

INTERGENIC REGION (O90A)]

[SP:P39274]

Contig146G

9956260_f2_324

2802

6928

2172

723

772

1.10E−76

gp:[GI:g558153]

[LN:APXIIICAB] [AC:X80055]

[GN:xIIIB] [OR:

Actinobacillus

pleuropneumoniae

]

[DE:

A.pleuropneumoniae

apxIIICABD gene.] [SP:Q04473]

Contig146G

9960135_c1_939

2803

6929

483

160

106

2.00E−05

pir:[LN:F70808] [AC:F70808]

[PN:hypothetical protein Rv1919c]

[GN:Rv1919c]

[OR:

Mycobacterium tuberculosis

]

Contig146G

10391086_c2_331

2804

6930

594

197

NO-HIT

Contig146G

10437511_f1_29

2805

6931

510

169

470

1.10E−44

sp:[LN:YEAL_ECOLI]

[AC:P76240:O07965:O07967]

[GN:YEAL] [OR:

ESCHERICHIA

COLI

] [DE:HYPOTHETICAL

15.3 KD PROTEIN IN GAPA-

RND INTERGENIC REGION]

[SP:P76240:O07965:O07967]

Contig146G

10467_c2_353

2806

6932

1842

613

557

6.90E−54

sp:[LN:YDCR_ECOLI]

[AC:P75906] [GN:YCDR]

[OR:

ESCHERICHIA COLI

]

[DE:PRECURSOR] [SP:P75906]

Contig146G

10718803_f1_14

2807

6933

288

95

NO-HIT

Contig146G

10735937_c1_327

2808

6934

186

61

NO-HIT

Contig146G

10973125_c2_372

2809

6935

951

316

725

1.10E−71

sp:[LN:MIAA_HAEIN]

[AC:P44495]

[GN:MIAA:TRPX:HI0068]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:2.5.1.8]

[DE:(IPP TRANSFERASE)]

[SP:P44495]

Contig146G

11745956_c3_423

2810

6936

489

162

137

2.20E−09

sp:[LN:YCDP_ECOLI]

[AC:P75904] [GN:YCDP]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 16.1 KD

PROTEIN IN PHOH-CSGG

INTERGENIC REGION]

[SP:P75904]

Contig147G

11759677_c1_258

2811

6937

1704

567

674

2.80E−66

sp:[LN:PQIB_ECOLI]

[AC:P43671:P77534]

[GN:PQIB:PQI5B]

[OR:

ESCHERICHIA COLI

]

[DE:PARAQUAT-INDUCIBLE

PROTEIN B] [SP:P43671:P77534]

Contig147G

11834455_c1_268

2812

6938

684

227

NO-HIT

Contig147G

12693911_c2_389

2813

6939

231

76

NO-HIT

Contig147G

12933301_c3_456

2814

6940

1506

501

290

1.90E−22

gp:[GI:g1232060] [LN:ECOF17D]

[AC:L77091] [PN:transmembrane

protein] [GN:F17d-C] [FN:base

protein for polymerization of

major] [OR:

Escherichia coli

]

[SR:

Escherichia coli

(individual_isolate natural isolate,

strai] [DE:

Escherichia coli

F17d

fimbrial gene cluster encoding the

majorfimbrial subunit protein

(F17d-A), the chaperone protein

(F17d-D),the transmembrane

protein (F17d-C), the adhesin

(F17d-G), completecds.]

[NT:putative]

Contig147G

13063426_c1_263

2815

6941

237

78

NO-HIT

Contig147G

1366028_f2_127

2816

6942

207

68

NO-HIT

Contig147G

13676301_c1_276

2817

6943

1332

443

129

7.90E−05

sp:[LN:YCDS_ECOLI]

[AC:P75907] [GN:YCDS]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 92.2 KD

PROTEIN IN PHOH-CSGG

INTERGENIC REGION

PRECURSOR] [SP:P75907]

Contig147G

13676312_f2_129

2818

6944

651

216

107

3.60E−07

gp:[GI:g3641340] [LN:AF090329]

[AC:AF090329]

[PN:cyclohexanone

monooxygenase homolog]

[OR:

Pseudomonas fluorescens

]

[DE:

Pseudomonas fluorescens

cyclohexanone monooxygenase

homolog gene,partial cds; lactone-

specific esterase (estf1) gene,

complete cds;and alkane-1

monooxygenase homolog gene,

partial cds.] [NT:Orf1]

Contig147G

13694177_f3_251

2819

6945

444

147

118

2.90E−07

sp:[LN:YDH1_XANAU]

[AC:P22645]

[OR:

XANTHOBACTER

AUTOTROPHICUS

]

[DE:HYPOTHETICAL 22.8 KD

PROTEIN IN DHLA 5′REGION]

[SP:P22645]

Contig147G

13697212_c2_338

2820

6946

1371

456

1396

8.50E−143

sp:[LN:SNDH_ACELI]

[AC:Q44091]

[OR:

ACETOBACTER

LIQUEFACIENS

] [EC:1.1.1.—]

[DE:L-SORBOSONE

DEHYDROGENASE, (SNDH)]

[SP:Q44091]

Contig147G

1382827_f3_167

2821

6947

444

147

NO-HIT

Contig147G

1415765_c1_269

2822

6948

780

259

488

1.40E−46

pir:[LN:574354] [AC:S74354]

[PN:hypothetical protein s110069]

[OR:Synechocystis sp.] [SR:PCC

6803, PCC 6803] [SR:PCC 6803,]

Contig147G

1444556_f2_113

2823

6949

1443

480

1016

1.60E−102

sp:[LN:YCJK_ECOLI]

[AC:P78061] [GN:YCJK]

[OR:

ESCHERICHIA COLI

]

[EC:6.3.1.2] [DE:LIGASE)]

[SP:P78061]

Contig147G

14500933_c2_356

2824

6950

300

99

NO-HIT

Contig147G

14501712_f2_93

2825

6951

1398

465

1476

2.80E−151

gp:[GI:g403171]

[LN:REREUTPBC] [AC:L24492]

[PN:ethanolamine ammonia-lyase

large subunit] [GN:eutB]

[FN:deamination ofethanolamine]

[OR:

Rhodococcus erythropolis

]

[EC:4.3.1.7] [DE:

Rhodococcus

crythropolis

ORF1, ethanolamine

permease (cutP),ethanolamine

ammonia-lyase large subunit

(eutB), ethanolamineammonia-

lyase small subunit (eutC) genes,

complete cds and ORF2gene,

partial cds.] [NT:similar to

Salmonella typhimurium

EutB

PIR]

Contig147G

14650302_c1_260

2826

6952

732

243

594

8.30E−58

sp:[LN:YGEA_ECOLI]

[AC:P03813] [GN:YGEA]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 25.2 KD

PROTEIN IN LYSR-ARAE

INTERGENIC REGION]

[SP:P03813]

Contig147G

14726550_c1_297

2827

6953

474

157

NO-HIT

Contig147G

14730302_f1_63

2828

6954

243

80

322

5.50E−29

pir:[LN:E64076] [AC:E64076]

[PN:ribosomal protein S18

[CL:

Escherichia coli

ribosomal

protein S18] [OR:

Haemophilus

influenzae

]

Contig147G

15078128_c1_282

2829

6955

1119

372

1221

3.00E−124

sp:[LN:RF1_HAEIN]

[AC:P43917] [GN:PRFA:HI1561]

[OR:

HAEMOPHILUS

INFLUENZAE

] [DE:PEPTIDE

CHAIN RELEASE FACTOR 1

(RF-1)] [SP:P43917]

Contig147G

15125312_c2_386

2830

6956

1038

345

132

3.70E−08

sp:[LN:PRU_MYXXA]

[AC:P27755] [GN:PRU]

[OR:

MYXOCOCCUS

XANTHUS

] [DE:PROTEIN U

PRECURSOR] [SP:P27755]

Contig147G

15682913_c3_410

2831

6957

1563

520

1107

3.60E−112

gp:[GI:g2996038] [LN:AF054525]

[AC:AF054525] [PN:hypothetical

protein] [OR:Synechococcus

PCC7002] [DE:Synechococcus

PCC7002 clone d76eh2.5

hypothetical protein genes.partial

and complete cds.] [NT:similar to

ORF s110335 of Syncchocystis sp.

PCC6803]

Contig147G

16445967_c1_287

2832

6958

1722

573

1083

1.30E−109

sp:[LN:ATKA_CLOAB]

[AC:O32327] [GN:KDPA]

[OR:

CLOSTRIDIUM

ACETOBUTYLICUM

]

[EC:3.6.1.36]

[DE:PHOSPHOHYDROLASE

[POTASSIUM-

TRANSPORTING] A CHAIN)]

[SP:O32327]

Contig147G

16504375_c3_411

2833

6959

819

272

268

2.90E−23

sp:[LN:Y0BW_MYCLE]

[AC:Q49757]

[GN:B1937_F2_39:MLCL536.03

C] [OR:

MYCOBACTERIUM

LEPRAE

] [DE:HYPOTHETICAL

31.1 KD PROTEIN

B1937_F2_39] [SP:Q49757]

Contig147G

16516702_c1_325

2834

6960

252

83

NO-HIT

Contig147G

16600265_f1_245

2835

6961

1245

414

189

4.30E−12

sp:[LN:YIDY_ECOLI]

[AC:P31462:P76739] [GN:YIDY]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 41.5 KD

PROTEIN IN TNAB-BGLB

INTERGENIC REGION]

[SP:P31462:P76739]

Contig147G

16828375_f1_190

2836

6962

1206

401

658

1.40E−64

pir:[LN:C64923] [AC:C64923]

[PN:chloramphenicol resistance

protein homolog b1657]

[CL:

Streptomyces lividans

chloramphenicol resistance

protein] [OR:

Escherichia coli

]

Contig147G

16854752_c1_315

2837

6963

372

123

114

6.10E−07

pir:[LN:S10709] [AC:S10709]

[PN:5-carboxymethyl-2-

hydroxymuconate isomerase]

[OR:

Escherichia coli

]

Contig147G

195250_c3_447

2838

6964

534

177

300

1.20E−26

gp:[GI:g1305418]

[LN:STU48735] [AC:U48735]

[PN:host factor I] [GN:hfq]

[OR:

Salmonella typhimurium

]

[SR:

Salmonella typhimurium

strain=LT2] [DE:

Salmonella

typhimurium

host factor I (hfq)

gene, complete cds.] [NT:HF-I;

RNA-binding protein]

Contig147G

19557802_c1_261

2839

6965

225

74

NO-HIT

Contig147G

19625667_f1_2

2840

6966

246

81

NO-HIT

Contig147G

19723825_c1_288

2841

6967

642

213

370

4.50E−34

sp:[LN:ATKC_MYCTU]

[AC:P96369]

[GN:KDPC:MTCY10G2.18C]

[OR:

MYCOBACTERIUM

TUBERCULOSIS

] [EC:3.6.1.36]

[DE:PHOSPHOHYDROLASE

[POTASSIUM-

TRANSPORTING] C CHAIN)]

[SP:P96369]

Contig147G

1991263_f1_77

2842

6968

1509

502

1790

1.50E−184

sp:[LN:PROP_ECOLI]

[AC:P30848] [GN:PROP]

[OR:

ESCHERICHIA COLI

]

[DE:PROLINE/BETAINE

TRANSPORTER (PROLINE

PORTER II) (PPII)] [SP:P30848]

Contig147G

19970216_c3_460

2843

6969

609

202

127

4.60E−07

gp:[GI:ef312906:g3355680]

[LN:SC1C2] [AC:AL031124]

[PN:putative transcriptional

regulator] [GN:SC1C2.13]

[OR:

Streptomyces coelicolor

]

[DE:

Streptomyces coelicolor

cosmid 1C2.] [NT:SC1C2.13,

probable transcriptional regulator,

len:]

Contig147G

20312875_c2_330

2844

6970

186

61

NO-HIT

Contig147G

20423817_c3_453

2845

6971

1731

576

486

1.90E−66

gp:[GI:g558414] [LN:SC9745]

[AC:Z38114:Z71257] [GN:PIF1]

[OR:

Saccharomyces cerevisiae

]

[SR:baker's yeast]

[DE:

S.cerevisiae

chromosome XIII

cosmid 9745.] [NT:len: 750, CAI:

0.14, incomplete ORF,

PIF_YEAST] [SP:P07271] [RE:

Contig147G

20504687_c3_420

2846

6972

198

65

NO-HIT

Contig147G

20517562_c2_379

2847

6973

1218

405

371

3.50E−34

sp:[LN:YTH3_RHOSO]

[AC:P46372]

[OR:RHODOCOCCUS SP]

[DE:HYPOTHETICAL 47.3 KD

PROTEIN IN THCA 5′REGION

(ORF3)] [SP:P46372]

Contig147G

20895252_f1_3

2848

6974

216

71

NO-HIT

Contig147G

2110001_f3_173

2849

6975

861

286

436

4.60E−41

sp:[LN:THIM_ECOLI]

[AC:P76423] [GN:THIM]

[OR:

ESCHERICHIA COLI

]

[EC.2.7.1.50]

[DE:HYDROXYETHYLTHIAZO

LE KINASE) (THZ KINASE) (TH

KINASE)] [SP:P76423]

Contig147G

212503_c3_462

2850

6976

1239

412

825

2.80E−82

sp:[LN:YBDG_ECOLI]

[AC:P39455:P77602] [GN:YBDG]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 46.6 KD

PROTEIN IN PHEP-NFNB

INTERGENIC REGION]

[SP:P39455:P77602]

Contig147G

212767_f1_22

2851

6977

657

218

494

3.30E−47

sp:[LN:NFNB_SALTY]

[AC:P15888] [GN:NFNB:NFSI]

[OR:

SALMONELLA

TYPHIMURIUM

] [EC:1.—.—.—]

[DE:OXYGEN-INSENSITIVE

NAD(P)H NITROREDUCTASE,]

[SP:P15888]

Contig147G

212802_c3_402

2852

6978

1302

433

1516

1.60E−155

sp:[LN:DCTA_RHIME]

[AC:P20672] [GN:DCTA]

[OR:

RHIZOBIUM MELILOTI

]

[DE:C4-DICARBOXYLATE

TRANSPORT PROTEIN]

[SP:P20672]

Contig147G

21515691_f3_163

2853

6979

669

222

606

4.40E−59

gp:[GI:g3241975] [LN:SSU85710]

[AC:U85710] [PN:transposase]

[OR:

Sulfolobus solfataricus

]

[DE:

Sulfolobus solfataricus

insertion element ISC1041,

transposasegene, complete cds.]

Contig147G

2157962_f3_217

2854

6980

1014

337

345

2.00E−31

sp:[LN:SSUA_ECOLI]

[AC:P75853] [GN:SSUA]

[OR:

ESCHERICHIA COLI

]

[DE:PUTATIVE ALIPHATIC

SULFONATES BINDING

PROTEIN PRECURSOR]

[SP:P75853]

Contig147G

21663380_f1_15

2855

6981

1254

417

1139

1.50E−115

gp:[GI:d1039248:g4519177]

[LN:AB023641] [AC:AB023641]

[PN:alcohol dehydrogenase] [GN:r-

adh] [OR:

Rhodospirillum rubrum

]

[SR:

Rhodospirillum rubrum

DNA]

[DE:

Rhodospirillum rubrum

hd-

ald gene for alcohol

dehydrogenase,complete cds.]

[NT:r-ADH]

Contig147G

22134625_f1_199

2856

6982

639

212

166

1.90E−12

sp:[LN:COQ7_CAEEL]

[AC:P48376] [GN:CLK-

1:ZC395.2]

[OR:

CAENORHABDITIS

ELEGANS] [DE:UBIQUINONE

BIOSYNTHESIS PROTEIN

COQ7 HOMOLOG (CLK-1

PROTEIN)] [SP:P48376]

Contig147G

22441876_c2_371

2857

6983

1998

665

588

1.70E−88

pir:[LN:F71650] [AC:F71650]

[PN:DNA mismatch repair protein

mutl (mutL) RP880]

[GN:mutL:RP880] [OR:

Rickettsia

prowazckii

]

Contig147G

22454437_f1_28

2858

6984

474

157

251

1.80E−21

pir:[LN:D69831] [AC:D69831]

[PN:conserved hypotbetical

protein yhfO] [GN:yhfO]

[OR:

Bacillus subtilis

]

Contig147G

22710760_c3_438

2859

6985

2661

886

1223

1.80E−124

sp:[LN:KDPD_ECOLI]

[AC:P21865] [GN:KDPD]

[OR:

ESCHERICHIA COLI

]

[EC:2.7.3.—] [DE:SENSOR

PROTEIN KDPD,] [SP:P21865]

Contig147G

22839765_c1_294

2860

6986

390

129

NO-HIT

Contig147G

22850008_c1_300

2861

6987

531

176

343

3.30E−31

sp:[LN:YJEE_ECOLI]

[AC:P31805] [GN:YJEE]

[OR:

ESCHERICHIA COLI

]

[DE:(URF2)] [SP:P31805]

Contig147G

23437887_c2_341

2862

6988

237

78

NO-HIT

Contig147G

23441967_c2_362

2863

6989

777

258

486

2.30E−46

sp:[LN:KDPE_ECOLI]

[AC:P21866:P75739:P76822]

[GN:KDPE] [OR:

ESCHERICHIA

COLI

] [DE:KDP OPERON

TRANSCRIPTIONAL

REGULATORY PROTEIN

KDPE]

[SP:P21866:P75739:P76822]

Contig147G

23558442_f1_61

2864

6990

636

211

631

9.90E−62

sp:[LN:CYOC_ECOLI]

[AC:P18402] [GN:CYOC]

[OR:

ESCHERICHIA COLI

]

[EC:1.10.3.—]

[DE:CYTOCHROME O

UBIQUINOL OXIDASE

SUBUNIT III,] [SP:P18402]

Contig147G

23598750_c2_345

2865

6991

1926

641

2373

2.50E−246

sp:[LN:GIDA_PSEPU]

[AC:P25756] [GN:GIDA]

[OR:

PSEUDOMONAS PUTIDA

]

[DE:GLUCOSE INHIBITED

DIVISION PROTEIN A]

[SP:P25756]

Contig147G

23620135_f1_8

2866

6992

546

181

315

3.00E−28

gp[GI:d1021388:g2217944]

[LN:D89015] [AC:D89015]

[PN:Lrp-family transcriptional

regulators] [GN:mdeR]

[OR:

Pseudomonas putida

]

[SR:

Pseudomonas putida

(strain:ICR3460) DNA]

[DE:

Pseudomonas putida

genes for

MdeR,MdeA and MdeB,complete

cds.] [NT:an essential positive

regulator allowing the]

Contig147G

23632762_c3_463

2867

6993

246

81

NO-HIT

Contig147G

23651375_f3_241

2868

6994

747

248

485

2.90E−46

sp:[LN:GLO2_SYNY3]

[AC:P72933]

[GN:GLOB:SLL1019]

[OR:SYNECHOCYSTIS SP]

[SR:PCC 6803,] [EC:3.1.2.6]

[DE:II)(GLX II)] [SP:P72933]

Contig147G

23722938_f3_176

2869

6995

240

79

NO-HIT

Contig147G

238817_c3_393

2870

6996

858

285

108

0.001

sp:[LN:YEHC_ECOLI]

[AC:P33342] [GN:YEHC]

[OR:

ESCHERICHIA COLI

]

[DE:PRECURSOR] [SP:P33342]

Contig147G

2396880_f2_92

2871

6997

1545

514

1915

8.60E−198

sp:[LN:DHA2_ALCEU]

[AC:P46368] [GN:ACOD]

[OR:

ALCALIGENES

EUTROPHUS

] [EC:1.2.1.3]

[DE:ACETALDEHYDE

DEHYDROGENASE II, (ACDH-

II)] [SP:P46368]

Contig147G

24007962_f1_67

2872

6998

243

80

NO-HIT

Contig147G

24032751 _f1_16

2873

6999

993

330

436

4.60E−41

pir:[LN:A70590] [AC:A70590]

[PN:hypothetical protein Rv2854]

[GN:Rv2854] [OR:

Mycobacterium

tuberculosis

]

Contig147G

24082285_c1_322

2874

7000

390

129

NO-HIT

Contig147G

242163_c3_419

2875

7001

861

286

653

4.60E−64

gp:[GI:g2772619]

[LN:EHU93355] [AC:U93355]

[PN:hypothetical 32.1 kDa protein]

[GN:ydiA] [OR:

Erwinia herbicola

]

[DE:

Erwinia herbicola

phosphenolpyruvate synthase

(ppsA) gene, partialcds, and

hypothetical 32.1 kDa protein

(ydiA) and3-deoxy-D-

arabinoheptulosonate 7-phosphate

synthase (aroH) genes,complete

cds.] [NT:similar to the

E. coli

hypothetical 19.8 kDa]

Contig147G

24220255_c3_395

2876

7002

252

83

NO-HIT

Contig147G

24251640_c2_369

2877

7003

264

87

NO-HIT

Contig147G

2429637_f3_188

2878

7004

351

116

86

0.00056

pir:[LN A64088] [AC:A64088]

[PN:hypothetical protein HI0710]

[OR:

Haemophilus influenzae

]

Contig147G

24406250_c1_295

2879

7005

1224

407

1406

7.50E−144

sp:[LN:ACO2_ECOLI]

[AC:P36683:P36648:Q59382:P75

652] [GN:ACNB]

[OR:

ESCHERICHIA COLI

]

[EC:4.2.1.3] [DE:(ACONITASE

2)]

[SP:P36683:P36648:Q59382:P756

52]

Contig147G

24415877_c2_384

2880

7006

708

235

121

1.50E−05

sp:[LN:LPFB_SALTY]

[AC:P43661] [GN:LPFB]

[OR:

SALMONELLA

TYPHIMURIUM

]

[DE:CHAPERONE PROTEIN

LPFB PRECURSOR] [SP:P43661]

Contig147G

24490628_c1_254

2881

7007

531

176

103

0.00037

sp:[LN:PRU_MYXXA]

[AC:P27755] [GN:PRU]

[OR:

MYXOCOCCUS

XANTHUS

] [DE:PROTEIN U

PRECURSOR] [SP:P27755]

Contig147G

24494152_c2_366

2882

7008

432

143

NO-HIT

Contig147G

2458437_f3_220

2883

7009

1122

373

856

1.40E−85

sp:[LN:YHBW_ECOLI]

[AC:P45529] [GN:YHBW]

[OR:

ESCHERCHIA COLI

]

[DE:HYPOTHETICAL 37.1 KD

PROTEIN IN SOHA-MTR

INTERGENIC REGION (O335)]

[SP:P45529]

Contig147G

24641535_c2_375

2884

7010

942

313

1002

4.80E−101

sp:[LN:SYQ_HAEIN]

[AC:P43831] [GN:GLNS:HI1354]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:6.1.1.18]

[DE:(GLNRS)] [SP:P43831]

Contig147G

24642192_c1_285

2885

7011

1305

434

541

3.40E−52

sp:[LN:Y16S_MYCTU]

[AC:P96936]

[GN:RV0647C:MTCY20H10.28C]

[OR:

MYCOBACTERIUM

TUBERCULOSIS

]

[DE:HYPOTHETICAL 54.8 KD

PROTEIN CY20H10.28C]

[SP:P96936]

Contig147G

24802167_c1_284

2886

7012

201

66

NO-HIT

Contig147G

24824007_f3_180

2887

7013

831

276

411

2.00E−38

gp:[GI:g403172]

[LN:REREUTPBC] [AC:L24492]

[PN:ethanolamine ammonia-lyase

small subunit] [GN:eutC]

[FN:deamination of ethanolamine]

[OR:

Rhodococcus erythropolis

]

[EC:4.3.1.7] [DE:

Rhodococcus

erythropolis

ORF1, ethanolamine

permease (eutP),ethanolamine

ammonia-lyase large subunit

(eutB), ethanolamineammonia-

lyase small subunit (eutC) genes,

comptete cds and ORF2gene,

partial cds.] [NT:similar to

Salmonella typhimurium

EutC

PIR]

Contig147G

24865687_c1_328

2888

7014

303

100

NO-HIT

Contig147G

24882285_c1_314

2889

7015

183

60

NO-HIT

Contig147G

25058_f1_17

2890

7016

1485

494

1423

1.20E−145

gp:[GI:g403170]

[LN:REREUTPBC] [AC:L24492]

[PN:ethanolamine permease]

[GN:eutP] [OR:

Rhodococcus

erythropolis

] [DE:

Rhodococcus

erythropolis

ORF1, ethanolamine

permease (cutP),ethanolamine

ammonia-lyase large subunit

(cutB), ethanolamineammonia-

lyase small subunit (eutC) genes,

comptete cds and ORF2gene,

partial cds.] [NT:member of the

APC family of transporters;

putative]

Contig147G

25430307_c2_332

2891

7017

2538

845

364

6.40E−30

gp:[GI:g1850972]

[LN:ECU84144] [AC:U84144]

[PN:putative fimbrial chaperone]

[GN:ralD] [OR:

Escherichia coli

]

[DE:

Escherichia coli

plasmid

pRAP including putative minor

fimbrialsubunit (ralC), putative

fimbrial chaperones (ralD, ralE),

putativeminor fimbrial subunit

(ralF) putative major fimbrial

subunit(ralG), putative minor

fimbrial subunit (ralH) and RalI

(ralI)genes, comptete cds.]

[NT:RalD]

Contig147G

25476657_f3_235

2892

7018

1092

363

NO-HIT

Contig147G

25547803_f1_74

2893

7019

549

182

162

5.00E−12

pir:[LN:D70063] [AC:D70063]

[PN:hypothetical protein ywnA]

[GN:ywnA] [OR:

Bacillus subtilis

]

Contig147G

25587776_f2_145

2894

7020

846

281

NO-HIT

Contig147G

25665885_f3_218

2895

7021

843

280

570

2.90E−55

sp:[LN:SSUC_BACSU]

[AC:P40401] [GN:SSUC]

[OR:

BACILLUS SUBTILIS

]

[DE:PUTATIVE ALIPHATIC

SULFONATES TRANSPORT

PERMEASE PROTEIN SSUC]

[SP:P40401]

Contig147G

25900391_c3_432

2896

7022

780

259

435

5.80E−41

sp:[LN:MOEB_ECOLI]

[AC:P12282] [GN:MOEB:CHLN]

[OR:

ESCHERICHIA COLI

]

[DE:MOLYBDOPTERIN

BIOSYNTHESIS MOEB

PROTEIN) [SP:P12282]

Contig147G

26564511_f3_228

2897

7023

381

126

347

1.20E−31

gp:[GI:g1773113]

[LN:ECU82664] [AC:U82664]

[PN:cytochrome o ubiquinol

oxidase C subunit] [GN:cyoD]

[OR:

Escherichia coli

]

[DE:

Escherichia coli

minutes 9 to

11 genomic sequence.]

Contig147G

272187_c2_364

2898

7024

2742

913

345

2.60E−62

sp:[LN:YTFM_ECOLI]

[AC:P39320] [GN:YTFM]

[OR:

ESCHERICHIA COLI

]

[DE:(O577)] [SP:P39320]

Contig147G

29297662_f2_137

2899

7025

1485

494

1186

1.50E−120

sp:[LN:DNAB_ECOLI]

[AC:P03005]

[GN:DNAB:GROP:GRPA]

[OR:

ESCHERICHIA COLI

]

[EC:3.6.1.—] [DE:REPLICATIVE

DNA HELICASE,] [SP:P03005]

Contig147G

29406562_f1_194

2900

7026

276

91

NO-HIT

Contig147G

29954635_f3_240

2901

7027

1098

365

799

1.60E−79

pir:[LN:D70020] [AC:D70020]

[PN:ABC transporter (ATP-

binding protein) homolog yusC]

[GN:yusC] [CL:ATP-binding

cassette homology] [OR:

Bacillus

subtilis

]

Contig147G

31757088_f1_239

2902

7028

915

304

370

4.50E−34

sp:[LN:PLPB_PASHA]

[AC:Q08869:Q07364] [GN:PLPB]

[OR:

PASTEURELLA

HAEMOLYTICA

] [DE:OUTER

MEMBRANE LIPOPROTEIN 2

PRECURSOR (PLP2)]

[SP:Q08869:Q073641

Contig147G

32480327_f1_65

2903

7029

1077

358

642

6.80E−63

sp:[LN:ALR1_ECOLI]

[AC:P29743:P78136] [GN:ALR]

[OR:

ESCHERICHIA COLI

]

[EC:5.1.1.1] [DE:ALANINE

RACEMASE, BIOSYNTHETIC,]

[SP:P29743:P78136]

Contig147G

3259425_c3_412

2904

7030

210

69

NO-HIT

Contig147G

33416538_f2_149

2905

7031

228

75

NO-HIT

Contig147G

33448517_f2_148

2906

7032

726

241

462

8.10E−44

sp:[LN:YAEE_ECOLI]

[AC:P31547] [GN:YAEE]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL ABC

TRANSPORTER PERMEASE

PROTEIN YAEE] [SP:P31547]

Contig147G

33782787_c3_431

2907

7033

1716

571

768

3.00E−76

sp:[LN:ACSA_BACSU]

[AC:P39062] [GN:ACSA]

[OR:

BACILLUS SUBTILIS

]

[EC:6.2.1.1] [DE:ACTIVATING

ENZYME) (ACETYL-COA

SYNTHASE)] [SP:P39062]

Contig147G

33834385_c3_433

2908

7034

462

153

181

4.80E−14

sp:[LN:FOLB_ECOLI]

[AC:P31055:P76659] [GN:FOLB]

[OR:

ESCHERICHIA COLI

]

[EC:4.1.2.25] [DE:PROBABLE

DIHYDRONEOPTERIN

ALDOLASE, (DHNA)]

[SP:P31055:P76659]

Contig147G

33881927_c3_428

2909

7035

864

287

514

2.50E−49

sp:[LN:HEMK_ECOLI]

[AC:P37186:Q46754]

[GN:HEMK] [OR:

ESCHERICHIA

COLI

] [DE:HEMK PROTEIN]

[SP:P37186:Q46754]

Contig147G

34176910_f1_60

2910

7036

2403

800

2805

4.20E−292

sp:[LN:PPSA_ECOLI]

[AC:P23538] [GN:PPSA:PPS]

[OR:

ESCHERICHIA COLI

]

[EC:2.7.9.2] [DE:(PEP

SYNTHASE)] [SP:P23538]

Contig147G

34195763_c3_443

2911

7037

807

268

NO-HIT

Contig147G

34647092_c3_437

2912

7038

2055

684

1836

2.00E−189

gp:[GI:g2772548]

[LN:ECOKDPABC] [AC:K02670]

[GN:kdpB] [OR:

Escherichia coli

]

[DE:

Escherichia coli

kdpABC

operon coding for Kdp-ATPase

proteinsKdpA,-B,-C.]

Contig147G

35156901_c2_334

2913

7039

204

67

NO-HIT

Contig147G

35355425_f3_226

2914

7040

1086

361

693

2.70E−68

sp:[LN:CYOA_ECOLI]

[AC:P18400] [GN:CYOA]

[OR:

ESCHERICHIA COLI

]

[EC:1.10.3.—] [DE:OXIDASE

SUBUNIT 2)] [SP:P18400]

Contig147G

35361312_c2_391

2915

7041

648

215

NO-HIT

Contig147G

35580012_c2_359

2916

7042

843

280

649

1.20E−63

pir:[LN:A70554] [AC:A70554]

[PN:probable dehydrogenase]

[GN:Rv1144] [OR:

Mycobacterium

tuberculosis

]

Contig147G

36537813_f1_69

2917

7043

1335

444

1407

5.80E−144

sp:[LN:PUR2_HAEIN]

[AC:P43845] [GN:PURD:HI0888]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:6.3.4.13]

[DE:RIBONUCLEOTIDE

SYNTHETASE)

(PHOSPHORIBOSYLGLYCINA

MIDE SYNTHETASE)]

[SP:P43845]

Contig147G

3885_f1_24

2918

7044

204

67

NO-HIT

Contig147G

3907161 _f3_187

2919

7045

918

305

435

5.80E−41

pir:[LN:F70533] [AC:F70533]

[PN:probable deaminase]

[GN:Rv3300c]

[OR:

Mycobacterium tuberculosis

]

Contig147G

3907503_c1_293

2920

7046

4515

1504

818

4.70E−84

sp:[LN:YTFN_HAEIN]

[AC:Q57523] [GN:H10696]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

HI0696] [SP:Q57523]

Contig147G

3907503_c2_339

2921

7047

462

153

NO-HIT

Contig147G

4022142_c1_257

2922

7048

627

208

211

5.30E−17

pir:[LN:A57146]

[AC:A57146:S52911]

[PN:paraquat-inducible protein

pqi5A] [GN:pqi5A]

[OR:

Eschcrichia coli

]

Contig147G

4026465_c2_335

2923

7049

774

257

124

2.50E−06

gp:[GI:d1036696:g4062520]

[LN:D90733]

[AC:D90733:AB001340]

[OR:

Escherichia coli

]

[SR:

Escherichia coli

(strain:K12)

DNA, clone:Kohara clone #222]

[DE:

Escherichia coli

genomic

DNA. (21.7 - 22.1 min).]

[NT:ORF_ID:o222#5]

Contig147G

4063588_c2_385

2924

7050

1044

347

150

2.70E−07

pir:[LN:S76350] [AC:S76350]

[PN:hypothetical protein]

[OR:Synechocystis sp.] [SR:PCC

6803,, PCC 6803] [SR:PCC 6803,]

Contig147G

40635_f3_237

2925

7051

294

97

233

1.50E−19

sp:[LN:FIS_HAEIN] [AC:P44966]

[GN:FIS:HI0980]

[OR:

HAEMOPHILUS

INFLUENZAE

] [DE:BINDING

PROTEIN) (FIS PROTEIN)]

[SP:P44966]

Contig147G

4079088_c1_321

2926

7052

693

230

111

0.00028

gp:[GI:g3133009] [LN:CELR119]

[AC:AF063007] [GN:R119.3]

[OR:

Caenorhabditis elegans

]

[DE:

Caenorhabditis elegans

cosmid R119.] [NT:similar to the

short-chain

deydrogenases/reductases]

Contig147G

4100077_c3_458

2927

7053

558

185

299

1.50E−26

sp:[LN:CHMU_ERWHE]

[AC:P42517] [GN:AROQ]

[OR:

ERWINIA HERBICOLA

]

[EC:5.4.99.5]

[DE:MONOFUNCTIONAL

CHORISMATE MUTASE

PRECURSOR, (CM-F)]

[SP:P42517]

Contig147G

4100276_f2_83

2928

7054

537

178

NO-HIT

Contig147G

4103378_c3_392

2929

7055

546

181

114

1.10E−05

sp:[LN:PRU_MYXXA]

[AC:P27755] [GN:PRU]

[OR:

MYXOCOCCUS

XANTHUS

] [DE:PROTEIN U

PRECURSOR] [SP:P27755]

Contig147G

4119038_f3_227

2930

7056

1995

664

2455

5.20E−255

sp:[LN:CYOB_ECOLI]

[AC:P18401][GN:CYOB

[OR:

ESCHERICHIA COLI

]

[EC:1.10.3.—] [DE:SUBUNIT 1)]

[SP:P18401]

Contig147G

4119452_c3_457

2931

7057

687

228

206

1.10E−16

pir:[LN:S76871] [AC:S76871]

[PN:hypothetical protein]

[OR:Synechocystis sp.] [SR:PCC

6803,, PCC 6803] [SR:PCC 6803,]

Contig147G

4140902_f1_19

2932

7058

732

243

346

1.60E−31

pir:[LN:D69409] [AC:D69409]

[PN:conserved hypothetical

protein AF1277]

[OR:

Archaeoglobus fulgidus

]

Contig147G

41603591_c1_253

2933

7059

576

191

584

9.50E−57

gp:[GI:g3241975] [LN:SSU85710]

[AC:U85710] [PN:transposase]

[OR:

Sulfolobus solfataricus

]

[DE:

Sulfolobus solfataricus

insertion element ISC1041,

transposasegene, complete cds.]

Contig147G

4195143_c1_296

2934

7060

1443

480

1972

7.80E−204

sp:[LN:ACO2_ECOLI]

[AC:P36683:P36648:Q59382:P75

652] [GN:ACNB]

[OR:

ESCHERICHIA COLI

]

[EC:4.2.1.3] [DE:(ACONITASE

2)]

[SP:P36683:P36648:Q59382:P756

52]

Contig147G

4301515_c1_259

2935

7061

927

308

401

2.30E−37

gp:[GI:d1039057:g4512354]

[LN:AB011836] [AC:AB011836]

[PN:alkyl hydroperoxide reductase

large subunit] [GN:ahpF]

[FN:NADH dehydrogenase]

[OR:

Bacillus halodurans

]

[SR:

Bacillus halodurans

(strain:C-

125, isolate:xylanase producer)

DNA] [EC:1.6.99.3] [DE:

Bacillus

halodurans

C-125 genomic DNA,

clone ALBAC003.] [NT:similar to

B.subtilis

ahpF gene(25%-

identity)]

Contig147G

4334662_c1_326

2936

7062

198

65

NO-HIT

Contig147G

4343778_f3_216

2937

7063

1038

345

259

2.60E−22

gp:[GI:d1037181:g4062962]

[LN:AB014757] [AC:AB014757]

[PN:PhbR] [GN:phbR]

[OR:Pseudomonas sp. 61-3]

[SR:Pseudomonas sp. 61-3

(strain:61-3) DNA]

[DE:Pseudomonas sp. 61-3 genes

for PhbR, acetoacetyl-CoA

reductase,beta-ketothiolase and

PHB synthase, complete cds.]

Contig147G

4381512_c3_427

2938

7064

894

297

169

5.60E−11

gp:[GI:e1251089:g2894296]

[LN:SPBC947] [AC:AL021837]

[PN:hypothetical protein]

[GN:SPBC947.09]

[OR:

Schizosaccharomyces pombe

]

[SR:fission yeast] [DE:

S.pombe

chromosome II cosmid c947.]

[NT:SPBC947.09, unknown,

len:26, similar eg. to S.]

Contig147G

440688_c1_286

2939

7065

447

148

NO-HIT

Contig147G

4429028_c3_398

2940

7066

816

271

387

7.10E−36

sp:[LN:PQIA_ECOLI]

[AC:P43670:P77566]

[GN:PQIA:PQI5A]

[OR:

ESCHERICHIA COLI

]

[DE:PARAQUAT-INDUCIBLE

PROTEIN A]

[SP:P43670:P77566]

Contig147G

4459833_c3_396

2941

7067

564

187

105

7.20E−06

gp:[GI:g1079814] [LN:S79230)

[AC:S79230] [PN:BM1P1]

[GN:CYP106] [OR:

Bacillus

megaterium

]

[DE:CYP106=BM1P2

orf...CYP106=P450BM-1 orf

{regulatory regions}[

Bacillus

megaterium

, mRNA Partial, 3

genes, 1400 nt].] [NT:positive

transcription factor involved in]

Contig147G

4472125_f1_51

2942

7068

654

217

162

3.00E−11

gp:[GI:e1288066:g3087870]

[LN:PM413CIRC]

[AC:AJ001525]

[PN:circumsporozoite]

[OR:

Plasmodium malariae

]

[DE:

Plasmodium malariae

circumsporozoite gene, isolate

413/Cameroon.]

Contig147G

4478167_f3_198

2943

7069

1332

443

751

7.60E−74

pir:[LN:E71667] [AC:E71667]

[PN:2-

acylglycerophosphoethanolamine

acyltransferase s) RP620]

[GNs:RP620] [OR:

Rickettsia

prowazekii

]

Contig147G

4687950_f2_146

2944

7070

1617

538

1877

9.10E−194

sp:[LN:PUR9_ECOLI]

[AC:P15639] [GN:PURH]

[OR:

ESCHERICHIA COLI

]

[EC:2.1.2.3:3.5.4.10]

[DE:(INOSINICASE) (IMP

SYNTHETASE) (ATIC)]

[SP:P15639]

Contig147G

485667_f3_211

2945

7071

612

203

379

5.00E−35

sp:[LN:YDDH_ECOLI]

[AC:P76121] [GN:YDDH]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 22.8 KD

PROTEIN IN TEHB-ANSP

INTERGENIC REGION]

[SP:P76121]

Contig147G

4884652_f3_168

2946

7072

507

168

146

2.50E−10

gp:[GI:g662919]

[LN:EHCOPAYZ] [AC:Z46807]

[GN:ORF U] [OR:

Enterococcus

hirae

] [DE:

E.hirae

copA, copY

and copZ genes.]

Contig147G

4890875_c1_302

2947

7073

240

79

NO-HIT

Contig147G

5l01505_f1_62

2948

7074

894

297

784

6.10E−78

gp:[GI:g1773112]

[LN:ECU82664] [AC:U82664]

[PN:cytochrome o ubiquinol

oxidase C subunit] [GN:cyoE]

[OR:

Escherichia coli

]

[DE:

Escherichia coli

minutes 9 to

11 genomic sequence.]

Contig147G

5111303_f1_78

2949

7075

243

80

NO-HIT

Contig147G

5272193_c1_317

2950

7076

2616

871

1578

4.40E−162

sp:[LN:AMPN_ECOLI]

[AC:P04825] [GN:PEPN]

[OR:

ESCHERICHIA COLI

]

[EC:3.4.11.2]

[DE:AMINOPEPTIDASE N,

(ALPHA-AMINOACYLPEPTIDE

HYDROLASE)] [SP:P04825]

Contig147G

5321076_f1_49

2951

7077

927

308

360

5.20E−33

pir:[LN:S47741]

[AC:S47741:D65150]

[PN:hypothetical transcription

regulator treF-kdgK intergenic

region:hypothetical protein o323]

[GN:yhjC] [OR:

Escherichia coli

]

Contig147G

548782_c1_255

2952

7078

1050

349

NO-HIT

Contig147G

581450_c1_320

2953

7079

870

289

184

2.70E−14

sp:[LN:FAG1_SYNY3]

[AC:P73574]

[GN:FABG1:SLR0886]

[OR:SYNECHOCYSTIS SP]

[SR:PCC 6803,] [EC:1.1.1.100]

[DE:KETOACYL- ACYL

CARRIER PROTEIN

REDUCTASE 1)] [SP:P73574]

Contig147G

6047213_f3_183

2954

7080

522

173

535

1.50E−51

sp:[LN:CYPB_ECOLI]

[AC:P23869:P78052] [GN:PPIB]

[OR:

ESCHERICHIA COLI

]

[EC:5.2.1.8] [DE:(ROTAMASE

B)] [SP:P23869:P78052]

Contig147G

6073387_c2_360

2955

7081

1152

383

908

4.40E−91

sp:[LN:ACDB_BACSU]

[AC:P45857] [GN:MMGC]

[OR:

BACILLUS SUBTILIS

]

[EC:1.3.99.—] [DE:ACYL-COA

DEHYDROGENASE,]

[SP:P45857]

Contig147G

6250153_f1_68

2956

7082

915

304

683

3.10E−67

sp:[LN:PRMA_HAEIN]

[AC:P44402] [GN:PRMA:HI0978]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:2.1.1.—]

[DE:RIBOSOMAL PROTEIN L11

METHYLTRANSFERASE,]

[SP:P44402]

Contig147G

6250_c1_291

2957

7083

573

190

NO-HIT

Contig147G

6462880_f3_230

2958

7084

450

149

474

4.30E−45

sp:[LN:RL9_ECOLI]

[AC:P02418] [GN:RPL1]

[OR:

ESCHERlCHIA COLI

]

[DE:50S RIBOSOMAL PROTEIN

L9] [SP:P02418]

Contig147G

664192_c3_444

2959

7085

717

238

370

4.50E−34

sp:[LN:RSUA_ECOLI]

[AC:P33918] [GN:RSUA]

[OR:

ESCHERICHIA COLI

]

[EC:4.2.1.70]

[DE:HYDROLYASE)]

[SP:P33918]

Contig147G

6773388_f3_184

2960

7086

729

242

455

4.40E−43

sp:[LN:YBBF_HAEIN]

[AC:P44046] [GN:HI0735]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

HI0735] [SP:P44046]

Contig147G

6828937_f1_172

2961

7087

1290

429

NO-HIT

Contig147G

6835452_c2_340

2962

7088

567

188

120

4.20E−06

gp:[GI:e1245750:g2808779]

[LN:SC7H1] [AC:AL021411]

[PN:putative transcriptional

regulator] [GN:SC7H1.21]

[OR:

Streptomyces coelicolor

]

[DE:

Streptomyces coelicolor

cosmid 7H1.] [NT:SC7H1.21,

probable transcriptional regulator,

len:]

Contig147G

6836093_c1_279

2963

7089

1260

419

1210

4.40E−123

gp:[GI:g1185391]

[LN:YPU22837] [AC:U22837]

[PN:HmsR] [GN:hmsR]

[FN:involved the regulation of the

hms locus hemin] [OR:

Yersinia

pestis

] [DE:

Yersinia pestis

HmsH

(hmsH), HmsF (hmsF), HmsR

(hmsR), and HmsS(hmsS) genes,

complete cds.] [NT:possible

integral inner membrane protein;

52 kDa,]

Contig147G

7125387_f1_31

2964

7090

186

61

NO-HIT

Contig147G

7226515_c2_383

2965

7091

549

182

192

3.30E−15

sp:[LN:PRU_MYXXA]

[AC:P27755] [GN:PRU]

[OR:

MYXOCOCCUS

XANTHUS

] [DE:PROTEIN U

PRECURSOR] [SP:P27755]

Contig147G

782628_f2_153

2966

7092

927

308

712

2.60E−70

pir:[LN:D64900] [AC:D64900]

[PN:membrane protein yddG]

[GN:yddG] [OR:

Escherichia coli

]

Contig147G

817812_c2_374

2967

7093

927

308

493

4.20E−47

sp:[LN:YD76_HAEIN]

[AC:P44170] [GN:HI1376]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

HI1376] [SP:P44170]

Contig147G

829377_c2_367

2968

7094

945

314

570

2.90E−55

sp:[LN:METR_HAEIN]

[AC:P45349] [GN:METR:HI1739]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:TRANSCRIPTIONAL

ACTIVATOR PROTEIN METR]

[SP:P45349]

Contig147G

867175_f3_166

2969

7095

2328

775

1264

6.30E−166

gp:[GI:e238716:g1296432]

[LN:AEALEBCYM]

[AC:X97499] [PN:ferric alcaligin

E] [GN:aleB] [OR:

Ralstonia

eutropha

] [DE:

A.eutrophus

aleB

and cysM genes.]

Contig147G

882127_c3_449

2970

7096

864

287

757

4.40E−75

sp:[LN:SYQ_HAEIN]

[AC:P43831] [GN:GLNS:HI1354]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:6.1.1.18]

[DE:(GLNRS)] [SP:P43831]

Contig147G

959676_c1_298

2971

7097

1080

359

282

8.10E−27

gp:[GI:g1546837]

[LN:CFU69963] [AC:U69963]

[PN:delayed rectifier potassium

channel protein] [OR:

Canis

familiaris

] [DE:

Canis familiaris

delayed rectifier potassium channel

protein mRNA,complete cds.]

Contig147G

970061_c3_397

2972

7098

915

304

407

5.40E−38

sp:[LN:YXXF_BACSU]

[AC:Q07835] [GN:YXXF:N17F]

[OR:

BACILLUS SUBTILIS

]

[DE:HYPOTHETICAL 34.3 KD

PROTEIN IN BGLH-WAPA

INTERGENIC REGION (ORF1)]

[SP:Q07835]

Contig147G

9772937_c3_421

2973

7099

1170

389

367

8.70E−33

sp:[LN:YCDS_ECOLI]

[AC:P75907] [GN:YCDS]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 92.2 KD

PROTEIN IN PHOH-CSGG

INTERGENIC REGION

PRECURSOR] [SP:P75907]

Contig147G

978452_f1_50

2974

7100

426

141

156

1.20E−10

sp:[LN:CSP_PLABR]

[AC:P14593]

[OR:

PLASMODIUM

BRASILIANUM

]

[DE:CIRCUMSPOROZOITE

PROTEIN (CS) (FRAGMENT)]

[SP:P14593]

Contig147G

9890776_f2_136

2975

7101

435

144

425

6.70E−40

sp:[LN:RS6_ECOLI]

[AC:P02358] [GN:RPSF]

[OR:

ESCHERICHIA COLI

]

[DE:30S RIBOSOMAL PROTEIN

S6] [SP:P02358)

Contig147G

992762_f2_135

2976

7102

774

257

101

1.40E−07

pir:[LN:B69767] [AC:B69767]

[PN:conserved hypothetical

protein yczC] [GN:yczC]

[OR:

Bacillus subtilis

]

Contig148G

10675427_f1_5

2977

7103

219

72

NO-HIT

Contig148G

1460875_c1_9

2978

7104

372

124

233

1.50E−19

gp:[GI:g3241975] [LN:SSU85710]

[AC:U85710] [PN:transposase]

[OR:

Sulfolobus solfataricus

]

[DE:

Sulfolobus solfataricus

insertion element ISC1041,

transposasegene, complete cds.]

Contig148G

1460875_f1_7

2979

7105

476

159

240

2.70E−20

gp:[GI:g3241975] [LN:SSU85710]

[AC:U85710] [PN:transposase]

[OR:

Sulfolobus solfataricus

]

[DE:

Sulfolobus solfataricus

insertion element ISC1041,

transposasegene, complete cds.]

Contig148G

24223167_c1_8

2980

7106

2172

723

1350

6.40E−138

sp:[LN:FHUE_ECOLI]

[AC:P16869:P77292] [GN:FHUE]

[OR:

ESCHERICHIA COLI

]

[DE:AND FE(III)-

RHODOTRULIC ACID

PRECURSOR]

[SP:P16869:P77292]

Contig148G

24258513_c3_14

2981

7107

1044

347

NO-HIT

Contig148G

35968802_c2_10

2982

7108

435

144

94

8.00E−05

gp:[GI:g3193063] [LN:AF064329]

[AC:AF064329] [PN:envelope

glycoprotein] [GN:env]

[OR:Human immunodeficiency

virus type 2] [DE:HIV-2 isolate

287 clone 19, from macaque 096

18 weekspostinoculation, from the

USA, envelope glycoprotein V1-

V2 region(env) gene, partial cds.]

T:V1-V2 region] [RE:

Contig148G

5335938_f1_4

2983

7109

528

175

213

2.00E−17

sp:[LN:YHBS_ECOLI]

[AC:P45473] [GN:YHBS]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 18.5 KD

PROTEIN IN SOHA-MTR

INTERGENIC REGION (F167)]

[SP:P45473]

Contig149G

10813552_f1_8

2984

7110

219

72

NO-HIT

Contig149G

11902187_c3_59

2985

7111

216

71

NO-HIT

Contig149G

13681383_f1_3

2986

7112

819

272

127

9.10E−07

sp:[LN:YAIS_ECOLI]

[AC:P71311:P75699] [GN:YAIS]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 20.5 KD

PROTEIN IN ADHC-TAUA

INTERGENIC REGION]

[SP:P71311:P75699]

Contig149G

1460875_f3_26

2987

7113

687

229

358

8.40E−33

gp:[GI:e1329745:g3688518]

[LN:PST5663] [AC:AJ005663]

[PN:putative transposase]

[OR:

Pseudomonas stutzeri

]

[DE:

Pseudomonas stutzeri

OX1

gene cluster encoding toluene/o-

xylenemonooxygenase

(touABCDEF) and putative gene

encoding a transposase.]

Contig149G

14959818_f1_2

2988

7114

1581

526

1359

7.10E−139

pir:[LN:D70825] [AC:D70825]

[PN:probable methylmalonate

semialdehyde dehydrogenase]

[GN:mmsA] [OR:

Mycobacterium

tuberculosis

]

Contig149G

21673813_f3_25

2989

7115

1260

419

1041

3.60E−105

sp:[LN:GLTS_HAEIN]

[AC:P45240] [GN:GLTS:HI1530]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:SODIUM/GLUTAMATE

SYMPORT CARRIER PROTEIN

(GLUTAMATE PERMEASE)]

[SP:P45240]

Contig149G

23539077_c1_41

2990

7116

918

305

182

6.60E−14

gp:[GI:g3650450]

[LN:MXU43810] [AC:U43810]

[PN:OxyR] [GN:oxyR]

[OR:

Mycobacterium xenopi

]

[DE:

Mycobacterium xenopi

alkyl

hydroperoxide reductase (ahpC)

gene,partial cds, and oxidative

stress regulator (oxyR) gene,

partialcds. genes.] [NT:oxidative

stress regulator] [RE:

Contig149G

23634637_f2_15

2991

7117

1401

466

1245

8.60E−127

sp:[LN:GABP_ECOLI]

[AC:P25527] [GN:GABP]

[OR:

ESCHERICHIA COLI

]

[DE:PERMEASE)] [SP:P25527]

Contig149G

23862530_f1_4

2992

7118

678

225

129

9.60E−06

pir:[LN:B69218] [AC:B69218]

[PN:conserved hypothetical

protein MTH884] [GN:MTH884]

[OR:

Methanobacterium

thermoautotrophicum

]

Contig149G

25660682_c1_28

2993

7119

975

324

424

8.60E−40

pir:[LN:S76006] [AC:S76006]

[PN:hypothetical protein]

[OR:Syncchocystis sp.] [SR:PCC

6803,, PCC 6803] [SR:PCC 6803,]

Contig149G

2613437_c3_53

2994

7120

972

323

253

1.10E−21

pir:[LN:D69749] [AC:D69749]

[PN:transcription regulator

AraC/XylS family homolog ybfI]

[GN:ybfI] [OR:

Bacillus subtilis

]

Contig149G

26204177_f2_18

2995

7121

396

131

165

2.40E−12

sp:[LN:YGIW_HAEIN]

[AC:P44293] [GN:HI1709]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

HI1709 PRECURSOR]

[SP:P44293]

Contig149G

30087707_c2_44

2996

7122

717

238

194

2.00E−15

sp:[LN:YFIK_ECOLI]

[AC:P38101] [GN:YFIK]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 21.2 KD

PROTEIN IN SRMB-UNG

INTERGENIC REGION]

[SP:P38101]

Contig149G

3915942_c3_54

2997

7123

330

109

NO-HIT

Contig149G

4062561_c2_42

2998

7124

372

123

NO-HIT

Contig149G

4173513_f1_7

2999

7125

744

247

287

2.80E−25

gp:[GI:g2961083] [LN:AF033674]

[AC:AF033674] [PN:unknown]

[OR:

Pseudomonas marginalis

pv.

alfalfae

] [DE:

Pseudomonas

marginalis

pv.

alfalfae

strain

LMG2214 unknown genes.]

[NT:orf1]

Contig149G

4734425_f2_16

3000

7126

1023

340

NO-HIT

Contig149G

5350062_c1_33

3001

7127

309

102

NO-HIT

Contig149G

7071057_f2_13

3002

7128

1389

462

1598

3.40E−164

pir:[LN:A42800] [AC:A42800]

[PN:beta-alanine--pyruvate

transaminase,:omega-amino acid--

pyruvate aminotransferase]

[CL:beta-alanine--pyruvate

transaminase] [OR:

Pseudomonas

putida

] [EC:2.6.1.18]

Contig149G

812512_f3_23

3003

7129

495

164

164

3.10E−12

pir:[LN:S75930] [AC:S75930]

[PN:hypothetical protein]

[OR:Synechocystis sp.] [SR:PCC

6803,, PCC 6803] [SR:PCC 6803,]

Contig149G

9928128_c2_43

3004

7130

1161

386

380

3.90E−35

gp:[GI:g4160475] [LN:AF109909]

[AC:AF109909] [PN:PHA

synthase PhaC] [GN:phaC]

[OR:

Bacillus megaterium

]

[DE:

Bacillus megaterium

polyhydroxyalkanoate gene

cluster, completesequence.]

Contig149G

9937828_f2_17

3005

7131

600

199

155

2.70E−11

sp:[LN:NODS_RHITR]

[AC:Q53514] [GN:NODS]

[OR:

RHIZOBIUM TROPICI

]

[EC:2.1.1.—] [DE:NODULATION

PROTEIN S,] [SP:Q53514]

Contig150G

10047812_f3_62

3006

7132

1116

371

336

1.80E−30

pir:[LN:F64705] [AC:F64705]

[PN:conserved hypothetical

integral membrane protein

HP1486] [OR:

Helicobacter pylori

]

Contig150G

1047676_f2_30

3007

7133

342

113

NO-HIT

Contig150G

10978511_c2_107

3008

7134

693

230

147

1.90E−10

gp[GI:g3309205] [LN:AF072735]

[AC:AF072735] [PN:ThlR]

[GN:thlR] [OR:

Clostridium

acetobutylicum

] [DE:

Clostridium

acetobutylicum

ThlR (thlR) and

thiolase B (thlB) genes,complete

cds; ThlC (thlC) gene, partial cds;

and unknown gene.] [NT:similar to

TetR/AcrR family of

transcriptional]

Contig150G

1209500_f1_14

3009

7135

387

128

100

1.80E−05

pir:[LN:F69892] [AC:F69892]

[PN:hypothetical protein yngA]

[GN:yngA] [OR:

Bacillus subtilis

]

Contig150G

12298775_f3_63

3010

7136

828

275

116

1.80E−06

sp:[LN:YDJC_ECOLI]

[AC:P37794:P77435] [GN:YDJC]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 27.8 KD

PROTEIN IN CELF-KATE

INTERGENIC REGION]

[SP:P37794:P77435]

Contig150G

127052_f3_61

3011

7137

1044

347

NO-HIT

Contig150G

12766577_f1_6

3012

7138

984

327

215

1.30E−17

gp:[GI:e334283:g2330641]

[LN:PFY14568] [AC:Y14568]

[GN:htrB] [OR:

Pseudomonas

fluorescens

] [DE:

Pseudomonas

fluorescens

tag gene and partial

glyQ, htrB genes.]

Contig150G

12781628_f3_71

3013

7139

438

145

102

4.90E−05

pir:[LN:153641] [AC:153641]

[PN:mucin] [GN:MUC5AC]

[OR:

Homo sapiens

] [SR:, man]

[MP:11p15.5-11p15.5]

Contig150G

14276512_c1_92

3014

7140

1266

421

1302

7.80E−133

sp:[LN:DCDA_PSEAE]

[AC:P19572] [GN:LYSA]

[OR:

PSEUDOMONAS

AERUGINOSA

] [EC:4.1.1.20]

[DE:DIAMINOPIMELATE

DECARBOXYLASE, (DAP

DECARBOXYLASE)]

[SP:P19572]

Contig150G

14333577_c1_86

3015

7141

1002

333

692

3.40E−68

pir:[LN:S56383]

[AC:S56383:JS0627:A65226:A04

437] [PN:lysine--tRNA ligase,

genX:lysyl-tRNA

synthetase:protein F-162]

[GN:yjeA:genX] [OR:

Escherichia

coli

] [EC:6.1.1 6] [MP:94 min]

Contig150G

14660677_c3_147

3016

7142

225

74

NO-HIT

Contig150G

15634662_f1_13

3017

7143

1134

377

280

1.60E−24

gp[GI:g4155989] [LN:AE001560]

[AC:AE001560:AE001439]

[PN:putative] [GN:jhp1380]

[OR:

Helicobacter pylori

J99]

[DE:

Helicobacter pylori

, strain J99

section 121 of 132 of the

completegenome.] [NT:similar to

H. pylori

26695 gene HP1487]

Contig150G

16304683_c1_85

3018

7144

840

279

535

1.50E−51

sp:[LN:FDHD_ECOLI]

[AC:P32177] [GN:FDHD]

[OR:

ESCHERICHIA COLI

]

[DE:FDHD PROTEIN]

[SP:P32177]

Contig150G

16594062_f3_79

3019

7145

807

268

355

1.80E−32

gp:[GI:e1316488:g3449276]

[LN:SC6G4] [AC:

AL031317]

[PN:putative dehydrogenase]

[GN:SC6G4.42c]

[OR:

Streptomyces coelicolor

]

[DE:

Streptomyces coelicolor

cosmid 6G4.] [NT:SC6G4.42c,

probable dehydrogenase, len: 257;]

Contig150G

19551575_f3_76

3020

7146

369

122

NO-HIT

Contig150G

20398452_c2_122

3021

7147

1098

365

406

6.90E−38

pir:[LN:E71697] [AC:E71697]

[PN:probable proteinase sohB

(sohB) RP398] [GN:sohB:RP398]

[OR:

Rickettsia prowazekii

]

Contig150G

21519656_c3_125

3022

7148

237

78

212

2.50E−17

gp:[GI:g3241975] [LN:SSU85710]

[AC:U85710] [PN:transposase]

[OR:

Sulfolobus solfataricus

]

[DE:

Sulfolobus solfataricus

insertion element ISC1041,

transposasegene, complete cds.]

Contig150G

21678191 _c1_102

3023

7149

1221

406

481

7.80E−46

pir:[LN:E71668] [AC:E71668]

[PN:probable permease perM

homolog (perM) RP630]

[GN:perM:RP630] [OR:

Rickettsia

prowazekii

]

Contig150G

22117206_c1_95

3024

7150

855

284

813

5.10E−81

sp:[LN:ETFB_BRAJA]

[AC:P53575] [GN:ETFB:ETFS]

[OR:

BRADYRHIZOBIUM

JAPONICUM

] [DE:TRANSFER

FLAVOPROTEIN SMALL

SUBUNIT) (ETFSS)) [SP:P53575]

Contig150G

22272052_f1_72

3025

7151

1017

338

NO-HIT

Contig150G

22693930_f1_7

3026

7152

183

60

NO-HIT

Contig150G

22891253_c3_143

3027

7153

753

250

627

2.60E−61

sp:[LN:YBBA_HAEIN]

[AC:P45247] [GN:HI1549]

[OR:

HAEMOPHlLUS

INFLUENZAE

]

[DE:HYPOTHETICAL ABC

TRANSPORTER ATP-BINDING

PROTEIN HI1549] [SP:P45247]

Contig150G

23621090_f1_12

3028

7154

1134

377

583

1.20E−56

gp:[GI:g4155990] [LN:AE001560]

[AC:AE001560:AE001439]

[PN:putative] [GN:jhp1381]

[OR:

Helicobacter pylori

J99]

[DE:

Helicobacter pylori

, strain J99

section 121 of 132 of the

completegenome.] [NT:similar to

H. pylori

26695 gene HP1488]

Contig150G

23875437_c1_90

3029

7155

1518

505

1462

8.70E−150

sp:[LN:CYCA_ECOLI]

[AC:P39312] [GN:CYCA:DAGA]

[OR:

ESCHERICHIA COLI

]

[DE:D-SERINE/D-

ALANINE/GLYCINE

TRANSPORTER] [SP:P39312]

Contig150G

23957255_f1_3

3030

7156

1098

365

1250

2.50E−127

gp:[GI:g1562541]

[LN:STU68765] [AC:U68765]

[PN:5′-phosphoribosyl-5-

aminoimidazole synthetase]

[GN:purI] [OR:

Salmonella

typhimurium

] [DE:

Salmonella

typhimurium 5′-

phosphoribosylglycinamide

transformylase(purN) and 5′-

phosphoribosyl-5-aminoimidazole

synthetase (purI)genes, complete

cds.]

Contig150G

24072215_c1_56

3031

7157

201

66

NO-HIT

Contig150G

24104827_c1_94

3032

7158

927

308

588

3.60E−57

sp:[LN:XERC_HAEIN]

[AC:P44818] [GN:XERC:HI0676]

[OR:

HAEMOPHlLUS

INFLUENZAE

]

[DE:INTEGRASE/RECOMBINA

SE XERC] [SP:P44818]

Contig150G

24395078_f3_69

3033

7159

726

241

272

1.10E−23

sp:[LN:YRHP_BACSU]

[AC:O05406] [GN:YRHP]

[OR:

BACILLUS SUBTILIS

]

[DE:HYPOTHETlCAL 23.4 KD

PROTEIN IN AAPA-SIGV

INTERGENIC REGION]

[SP:O05406]

Contig150G

24423588_c1_84

3034

7160

2421

806

1957

3.00E−202

gp:[GI:g1620508]

[LN:REU60056] [AC:U60056]

[PN:CbbBc] [GN:cbbBc]

[OR:

Ralstonia eutropha]

[DE:

Ralstonia eutropha formate

dehydrogenase-like protein

(cbbBc) gene,complete cds.]

[NT:function unknown; formate

dehydrogenase-like]

Contig150G

2454625_c2_112

3035

7161

1143

380

640

1.10E−62

sp:[LN:PDXB_ECOLI]

[AC:P05459] [GN:PDXB]

[OR:

ESCHERICHIA COLI

]

[EC:1.1.1.—]

[DE;ERYTHRONATE-4-

PHOSPHATE

DEHYDROGENASE,]

[SP:P05459]

Contig150G

24652180_c1_104

3036

7162

1359

452

NO-HIT

Contig150G

25584818_c3_133

3037

7163

858

285

820

9.30E−82

pir:[LN:S01913]

[AC:B65185:S30699:S01913;A37

841:S24977] [PN:diaminopimetate

epimerase,] [GN:dapF]

[CL:diaminopimelate epimerase]

[OR:

Escherichia coli

] [EC:5.1.1.7]

[MP:85 min]

Contig150G

25664167_c3_135

3038

7164

966

321

936

4.80E−94

sp:[LN:ETFA_BRAJA]

[AC:P53573] [GN:ETFA:ETFL]

[OR:

BRADYRHIZOBIUM

JAPONICUM] [DE:TRANSFER

FLAVOPROTEIN LARGE

SUBUNIT) (ETFLS)]

[SP:P53573]

Contig150G

26745250_c2_123

3039

7165

828

275

108

0.00021

pir:[LN;E70010] [AC:E70010]

[PN:dihydrolipoamide S-

acetyltransferase homolog yugF]

[GN:yugF] [OR:

Bacillus subtilis

]

Contig150G

26834632_f1_11

3040

7166

1521

506

417

4.70E−39

gp:[GI:g4155991] [LN:AE001560]

[AC:AE001560:AE001439]

[PN:putative] [GN:jhp1382]

[OR:

Helicobacter pylori

J99]

[DE:

Helicobacter pylori

, strain J99

section 121 of 132 of the

completegenome.] [NT:similar to

H. pylori

26695 gene HP1489]

Contig150G

29718812_f1_27

3041

7167

1182

393

918

3.80E−92

sp:[LN:YXAA_BACSU]

[AC:P42100] [GN:YXAA:S14A]

[OR:

BACILLUS SUBTILIS

]

[DE:HYPOTHETICAL 39.4 KD

PROTEIN IN GNTR-HTPG

INTERGENIC REGION]

[SP:P42100]

Contig150G

30133563_c2_116

3042

7168

2727

908

2428

2.10E−286

sp:[LN:GYRA_ERWCA]

[AC:P41513] [GN:GYRA]

[OR:

ERWINIA CAROTOVORA

]

[EC:5.99.1.3] [DE:DNA GYRASE

SUBUNIT A,] [SP:P41513]

Contig150G

30353162_c3_127

3043

7169

681

226

91

0.00051

gp:[GI:g1079814] [LN:S79230]

[AC:S79230] [PN:BM1P1]

[GN:CYP106] [OR:

Bacillus

megaterium

]

[DE:CYP106=BM1P2

orf...CYP106=P450BM-1 orf

{regulatory regions}[

Bacillus

megaterium

, mRNA Partial, 3

genes, 1400 nt].] [NT:positive

transcription factor involved in]

Contig150G

31912558_c3_134

3044

7170

186

61

NO-HIT

Contig150G

32084683_c1_103

3045

7171

1041

346

NO-HIT

Contig150G

33302052_c1_97

3046

7172

198

65

NO-HIT

Contig150G

34116562_c3_149

3047

7173

765

254

217

7.40E−18

gp:[GI:g3212215] [LN:U32802]

[AC:U32802:L42023]

[PN:conserved hypothetical

protein] [GN:HI1225.1]

[OR:

Haemophilus influenzae

Rd]

[DE:

Haemophilus influenzae

Rd

section 117 of 163 of the

completegenome.] [NT:similar to

GB:U00096 PID:1788842

PID:1805556]

Contig150G

36125637_c3_130

3048

7174

420

139

105

5.50E−06

pir:[LN:S74843] [AC:S74843]

[PN:hypothetical protein s110846]

[OR:Synechocystis sp.] [SR:PCC

6803,, PCC 6803] [SR:PCC 6803,]

Contig150G

3923438_f1_28

3049

7175

615

204

458

2.10E−43

pir:[LN:S75047] [AC:S75047]

[PN:drgA protein:protein

slr1719:protein slr1719]

[GN:drgA] [CL:nitroreductase]

[OR:Synechocystis sp.] [SR:PCC

6803,, PCC 6803] [SR:PCC 6803,]

Contig150G

4146943_f1_15

3050

7176

1656

551

386

1.80E−34

gp:[GI:g2921423] [LN:AF036677]

[AC:AF036677] [PN:unknown]

[OR:

Salmonella typhimurium

]

[DE:

Salmonella typhimurium

putative operon regulated by

PmrAB,necessary for 4-

aminoarabinose lipid A

modification and

polymyxinresistance, PmrG

(pmrG) gene, partial cds; PmrF

(pmrF) gene and 6orfs, complete

cds; and PmrD (pmrD) gene,

partial cds.] [NT:orf5; fifth orf of

putative 7 gene PmrAB-regulated]

Contig150G

4148433_f2_51

3051

7177

1482

493

1527

1.10E−156

sp:[LN:RADA_PSEAE]

[AC:P96963] [GN:RADA:SMS]

[OR:

PSEUDOMONAS

AERUGINOSA

] [DE:DNA

REPAIR PROTEIN RADA

HOMOLOG (DNA REPAIR

PROTEIN SMS HOMOLOG)]

[SP:P96963]

Contig150G

4803825_f2_37

3052

7178

1026

341

714

1.60E−70

sp:[LN:Y501_SYNY3]

[AC:Q55487] [GN:SLL0501]

[OR:SYNECHOCYSTIS SP]

[SR:PCC 6803,]

[DE:HYPOTHETICAL 36.7 KD

PROTEIN SLL0501] [SP:Q55487]

Contig150G

4883436_c3_150

3053

7179

921

306

NO-HIT

Contig150G

4884702_f3_58

3054

7180

630

209

481

7.80E−46

gp:[GI:g387019]

[LN:HUMPGFTA] [AC:M32082]

[GN:GART] [OR:

Homo sapiens

]

[SR:Human, cDNA to mRNA,

clone pD546] [DE:Human

phosphoribosylglycinamide

formyltransferase (PGFT) mRNA,

3′end.]

[NT:phosphoribosylglycinamide

formyltransferase]

Contig150G

5265702_c1_99

3055

7181

2433

810

490

2.60E−46

gp:[GI:d1013133:g1303798]

[LN:BACJH642]

[AC:D84432:D82370]

[PN:ComEC] [OR:

Bacillus

subtilis

] [SR:

Bacillus subtilis

(strain:JH642(trpC2 PheA1))

DNA] [DE:

Bacillus subtilis

DNA,

283 Kb region containing skin

element.]

Contig150G

5944762_c3_141

3056

7182

513

170

400

3.00E−37

sp:[LN:YAII_ECOLI]

[AC:P52088:P75703] [GN:YAII]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 17.0 KD

PROTEIN IN PROC-AROL

INTERGENIC REGION]

[SP:P52088:P75703]

Contig150G

5958252_c3_126

3057

7183

810

269

NO-HIT

Contig150G

6445292_c1_98

3058

7184

942

313

235

9.10E−20

sp:[LN:YEDA_ECOLI]

[AC:P09185] [GN:YEDA]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 32.2 KD

PROTEIN IN DSRA-VSR

INTERGENIC REGION (ORF 4)]

[SP:P09185]

Contig150G

6532312_c3_132

3059

7185

330

109

NO-HIT

Contig150G

827_c2_120

3060

7186

1122

373

1097

4.10E−111

sp:[LN:SERC_SALGL]

[AC:P17902] [GN:SERC]

[OR:

SALMONELLA

GALLINARUM] [EC:2.6.1.52]

[DE:PHOSPHOSERINE

AMINOTRANSFERASE,

(PSAT)] [SP:P17902]

Contig150G

9792837_c1_93

3061

7187

660

219

102

5.70E−10

pir:[LN:E70010] [AC:E70010]

[PN:dihydrolipoamide S-

acetyltransferase homolog yugF]

[GN:yugF] [OR:

Bacillus subtilis

]

Contig150G

9863808_f1_2

3062

7188

249

82

NO-HIT

Contig150G

9879702_c2_121

3063

7189

1281

426

769

2.40E−76

sp:[LN:YCFW_ECOLI]

[AC:P75958] [GN:YCFW]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 45.3 KD

PROTEIN IN MFD-COBB

INTERGENIC REGION]

[SP:P75958]

Contig151G

10037512_f1_25

3064

7190

2352

783

1478

1.70E−151

pir:[LN:B70838] [AC:B70838]

[PN:hypothetical protein Rv0197]

[GN:Rv0197] [OR:

Mycobacterium

tuberculosis

]

Contig151G

10040885_f2_254

3065

7191

1842

613

1458

2.30E−149

sp:[LN:KEFX_HAEIN]

[AC:P44933]

[GN:KEFBC:HI0911]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:ANTIPORTER)] [SP:P44933]

Contig151G

101081_c2_813

3066

7192

267

88

NO-HIT

Contig151G

10214525_f2_309

3067

7193

765

254

NO-HIT

Contig151G

1048442_c1_607

3068

7194

219

72

NO-HIT

Contig151G

1052183_f3_383

3069

7195

2055

684

2188

1.00E−226

sp:[LN:FADH_ECOLI]

[AC:P42593] [GN:FADH]

[OR:

ESCHERICHIA COLI

]

[EC:1.3.1.34] [DE:A

REDUCTASE)] [SP:P42593]

Contig151G

10578201_f1_70

3070

7196

450

149

182

3.80E−14

gp:[GI:g2822324] [LN:AF016485]

[AC:AF016485]

[OR:Halobacterium sp. NRC-1]

[DE:Halobacterium sp. NRC-1

plasmid pNRC100, complete

plasmid sequence.] [NT:ORF

H0554; same as H1810 in IR-L]

Contig151G

1063762_c2_821

3071

7197

903

300

162

3.10E−14

pir:[LN:G70407] [AC:G70407]

[PN:hypothetical protein aq_1247]

[GN:aq_1247] [OR:

Aquifex

aeolicus

]

Contig151G

1069702_c2_699

3072

7198

984

327

NO-HIT

Contig151G

10725952_f2_181

3073

7199

1197

398

968

1.90E−97

sp:[LN:DXR_ECOLI]

[AC:P45568:P77209] [GN:DXR]

[OR:

ESCHERICHIA COLI

]

[DE:REDUCTOISOMERASE)]

[SP:P45568:P77209]

Contig151G

10726452_f2_170

3074

7200

255

84

92

0.00013

gp:[GI:e1420096:g4538974]

[LN:ATF28M11] [AC:AL049487]

[PN:hypothetical protein]

[GN:F28M11.20] [OR:

Arabidopsis

thaliana

] [SR:thale cress]

[DE:

Arabidopsis thaliana

DNA

chromosome 4, BAC clone

F28M11 (ESSAproject).]

Contig151G

10930_f3_387

3075

7201

420

139

169

9.00E−13

sp:[LN:YGBQ_HAEIN]

[AC:P44035] [GN:HI0673]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

HI0673] [SP:P44035]

Contig151G

10970768_f1_105

3076

7202

627

208

160

8.10E−12

pir:[LN:H70042] [AC:H70042]

[PN:transcription regulator

TetR/AcrR family homolog yvkB]

[GN:yvkB] [OR:

Bacillus subtilis

]

Contig151G

10972153_f3_450

3077

7203

467

488

793

6.80E−79

gp:[GI:g2826753] [LN:AF039169]

[AC:AF039169] [PN:indole-3-

acetamide hydrolase] [GN:H]

[OR:

Agrobacterium vitis

]

[DE:

Agrobacterium vitis

plasmid

pTiAG162 indole-3-acetamide

hydrolase(H) gene, complete cds.]

Contig151G

11047188_c2_750

3078

7204

330

109

460

1.30E−43

gp:[GI:g2996616] [LN:AF009224]

[AC:AF009224:M76991:M76990:

M23245:M29848:M29714:M6264

9] [PN:muconolactone isomerase]

[GN:catC] [FN:conversion of

muconolactone to ketoadipate]

[OR:Acinetobacter sp. ADP1]

[DE:Acinetobacter sp. ADP1 ben

operon and cat operon,

completesequence.]

Contig151G

11142130_c2_785

3079

7205

603

200

277

3.20E−24

pir:[LN:H70875] [AC:H70875]

[PN:hypothetical protein Rv1176c]

[GN:Rv1176c]

[OR:

Mycobacterium tuberculosis

]

Contig151G

11150313_f1_86

3080

7206

1320

439

959

1.70E−96

sp:[LN:TUB3_AGRVI]

[AC:P70786] [GN:TTUB]

[OR:

AGROBACTERIUM VITIS

]

[DE:PUTATIVE TARTRATE

TRANSPORTER] [SP:P70786]

Contig151G

11768807_c3_881

3081

7207

1332

443

231

8.80E−17

pir:[LN:C69448] [AC:C69448]

[PN:conserved hypothetical

protein AF1588]

[OR:

Archaeoglobus fulgidus

]

Contig151G

11880442_f2_290

3082

7208

1599

532

245

4.70E−27

pir:[LN:S74561] [AC:S74561]

[PN:hypothetical protein s110225]

[OR:Synechocystis sp.] [SR:PCC

6803,, PCC 6803] [SR:PCC 6803,]

Contig151G

11910927_f1_93

3083

7209

225

74

NO-HIT

Contig151G

11923260_f3_352

3084

7210

1488

495

1637

2.50E−168

sp:[LN:YLIG_ECOLI]

[AC:P75802] [GN:YLIG]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 49.6 KD

PROTEIN IN MOEA-DACC

INTERGENIC REGION]

[SP:P75802]

Contig151G

12281636_c2_721

3085

7211

183

60

NO-HIT

Contig151G

12555437_f2_258

3086

7212

492

163

NO-HIT

Contig151G

126036_f2_204

3087

7213

1131

376

1017

1.20E−102

sp:[LN:FTSY_ECOLI]

[AC:P10121] [GN:FTSY]

[OR:

ESCHERICHIA COLI

]

[DE:CELL DIVISION PROTEIN

FTSY] [SP:P10121]

Contig151G

1286068_c1_622

3088

7214

1599

532

2205

1.60E−228

sp:[LN:CYDA_AZOVI]

[AC:Q09049] [GN:CYDA]

[OR:

AZOTOBACTER

VINELANDII

] [EC:1.10.3.—]

[DE:CYTOCHROME D

UBIQUINOL OXIDASE

SUBUNIT I,] [SP:Q09049]

Contig151G

12925333_c3_1009

3089

7215

651

216

NO-HIT

Contig151G

13672192_c3_998

3090

7216

549

182

461

1.00E−43

gp:[GI:e1314177:g3395518]

[LN:PMAJ84] [AC:AJ000084]

[PN:putative acetyl transferase]

[GN:pat] [OR:

Proteus mirabilis

]

[DE:

Proteus mirabilis

ccm and pat

genes and partial ygbA gene.]

Contig151G

13676577_c3_919

3091

7217

1176

391

196

4.60E−15

gp:[GI:c251801:g1419427]

[LN:CCXYLX] [AC:X98879]

[GN:xylX] [FN:xylose utilization]

[OR:

Caulobacter crescentus

]

[DE:

C.crescuntus

xylX gene.]

[NT:transcription induced by

xylose] [RE:

Contig151G

1369037_f1_129

3092

7218

984

327

173

9.50E−11

gp:[GI:g4455079] [LN:AF119621]

[AC:AF119621] [PN:DitH]

[GN:ditH] [OR:

Pseudomonas

abietaniphila

] [DE:

Pseudomonas

abietaniphila

BKME-9 DitI (ditI),

dioxygenase DitAoxygenase

component small subunit (ditA2),

dioxygenase DitAoxygenase

component large subunit (ditA1).

DitH (ditH), DitG(ditG), DitF

(ditF), DitR (ditR), DitE (ditE),

DitD (ditD),aromatic diterpenoid

extradiol ring-cleavage dioygenase

(ditC),DitB (ditB), and

dioxygenase DitA ferredoxin

component (ditA3)genes, complete

cds; and unknown genes.]

[NT:hypthetical protein; C-

terminus similar to]

Contig151G

13710887_c3_1041

3093

7219

252

83

NO-HIT

Contig151G

13759687_f1_50

3094

7220

600

199

279

2.00E−24

sp:[LN:YC08_YEAST]

[AC:P37261]

[GN:YCLX08C:YCLX8C]

[OR:

SACCHAROMYCES

CEREVISIAE

] [SR:,BAKER'S

YEAST] [DE:HYPOTHETICAL

21.1 KD PROTEIN IN FUS1-

AGP1 INTERGENIC REGION]

[SP:P37261]

Contig151G

13790902_f1_76

3095

7221

957

318

721

2.90E−71

sp:[LN:VANB_PSESP]

[AC:O05617] [GN:VANB]

[OR:PSEUDOMONAS SP]

[SR:HR199 / DSM 7063,]

[EC:1.14.13.—]

[DE:DEGRADATION

FERREDOXIN-LIKE PROTEIN)]

[SP:O05617]

Contig151G

13796918_c1_486

3096

7222

198

65

NO-HIT

Contig151G

13869152_f3_329

3097

7223

1302

433

370

4.50E−34

pir:[LN:D69856] [AC:D69856]

[PN:conserved hypothetical

protein ykgB] [GN:ykgB]

[OR:

Bacillus subtilis

]

Contig151G

13948343_f1_64

3098

7224

1704

567

1885

1.30E−194

sp:[LN:PYRG_HAEIN]

[AC:P44341] [GN:PYRG:HI1077]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:6.3.4.2]

[DE:CTP SYNTHASE, (UTP--

AMMONIA LIGASE) (CTP

SYNTHETASE)] [SP:P44341]

Contig151G

14066927_c3_1027

3099

7225

1380

459

226

1.20E−26

gp:[GI:d1006210:g1498192]

[LN:PSEOPRC] [AC:D28119]

[OR:

Pseudomonas aeruginosa

]

[SR:

Pseudomonas aeruginosa

,]

(strain PAO1), DNA, (clone

pTN100)] [DE:

Pseudomonas

aeruginosa

oprC gene for outer

membrane protein C,complete

cds.] [NT:putative]

Contig151G

14087778_f3_375

3100

7226

330

109

NO-HIT

Contig151G

14094467_f3_390

3101

7227

426

141

608

2.70E−59

sp:[LN:DC4C_ACICA]

[AC:P20370] [GN:PCAC]

[OR:

ACINETOBACTER

CALCOACETICUS

]

[EC:4.1.1.44] [DE:4-

CARBOXYMUCONOLACTONE

DECARBOXYLASE, (CMD)]

[SP:P20370]

Contig151G

14119062_f3_462

3102

7228

381

126

NO-HIT

Contig151G

14329550_c2_793

3103

7229

1599

532

NO-HIT

Contig151G

1443_f2_149

3104

7230

231

76

NO-HIT

Contig151G

14459375_c3_971

3105

7231

903

300

225

1.60E−18

pir:[LN:H70882] [AC:H70882]

[PN:hypothetical protein Rv2777c]

[GN:Rv2777c]

[OR:

Mycobacterium tuberculosis

]

Contig151G

14470708_c1_543

3106

7232

255

84

NO-HIT

Contig151G

14486028_f3_432

3107

7233

249

82

NO-HIT

Contig151G

14490675_f2_281

3108

7234

975

324

335

2.30E−30

sp:[LN:GBPR_AZOBR]

[AC:P52661] [GN:GBPR]

[OR:

AZOSPIRILLUM

BRASILENSE

]

[DE:GALACTOSE-BINDING

PROTEIN REGULATOR (GBP

REGULATOR)] [SP:P52661]

Contig151G

14558317_f3_340

3109

7235

354

117

NO-HIT

Contig151G

14571000_f1_120

3110

7236

1341

446

241

1.20E−17

sp:[LN:TOLC_SALEN]

[AC:Q54001] [GN:TOLC]

[OR:

SALMONELLA

ENTERITIDIS

] [DE:OUTER

MEMBRANE PROTEIN TOLC

PRECURSOR] [SP:Q54001]

Contig151G

14573407_c1_533

3111

7237

1626

541

1311

8.70E−134

pir:[LN:S27612] [AC:S27612]

[PN:ketoglutarate semialdehyde

dehydrogenase,]

[OR:

Pseudomonas putida

]

[EC:1.2.1.—]

Contig151G

14583593_f1_131

3112

7238

3123

1040

2603

1.10E−270

gp:[GI:g1399758]

[LN:PAU57969] [AC:U57969]

[PN:RND family exporter Mexd]

[GN:mexD] [OR:

Pseudomonas

aeruginosa

] [SR:

Pseudomonas

aeruginosa

strain=PAO]

[DE:

Pseudomonas aeruginosa

membrane fusion protein MexC

(mexC), RNDfamily exporter

MexD (mexD), and outer

membrane protein OprJ

(oprJ)genes, complete cds.]

[NT:cytoplasmic membrane-

associated]

Contig151G

14587777_c1_625

3113

7239

300

99

106

4.30E−06

sp:[LN:YBGE_ECOLI]

[AC:P37343:P75755] [GN:YBGE]

[OR:

ESCHERICHIA COLI

]

[DE:10.9 KD PROTEIN IN CYDB-

TOLQ INTERGENIC REGION

(ORFD)] [SP:P37343:P75755]

Contig151G

1460875_f1_1

3114

7240

570

189

254

8.90E−22

gp:[GI:g3241975] [LN:SSU85710]

[AC:U85710] [PN:transposase]

[OR:

Sulfolobus solfataricus

]

[DE:

Sulfolobus solfataricus

insertion element ISC1041,

transposasegene, complete cds.]

Contig151G

14648537_c3_873

3115

7241

426

141

489

1.10E−46

gp:[GI:g3241975] [LN:SSU85710]

[AC:U85710] [PN:transposase]

[OR:

Sulfolobus solfataricus

]

[DE:

Sulfolobus solfataricus

insertion element ISC1041,

transposasegene, complete cds.]

Contig151G

14875262_f1_41

3116

7242

492

163

348

9.70E−32

gp:[GI:g1718488]

[LN:NMU79481] [AC:U79481]

[PN:FabZ] [GN:fabZ] [FN:fatty

acid biosynthesis] [OR:

Neisseria

meningitidis

] [DE:

Neisseria

meningitidis

UDP-3-O-(R-3-

hydroxymyristoyl)-glucosamineN-

acyltransferase (lpxD) gene, partial

cds, and3(R)-hydroxymyristoyl

acyl carrier protein dehydrase

(fabZ) andUDP-N-

acetylglucosamine acyltransferase

(lpxA) genes, complete cds.]

[NT:3(R)-hydroxymyristoyl acyl

carrier protein]

Contig151G

14881306_c3_977

3117

7243

378

125

115

4.80E−07

pir:[LN:E41858] [AC:E41858]

[PN:biphenyl dioxygenase,

ferredoxin component]

[GN:bphA3:bphF] [CL:toluene

dioxygenase ferredoxin

component] [OR:Pseudomonas

sp] [EC:1.14.—.—]

Contig151G

14881927_c1_677

3118

7244

996

331

837

1.50E−83

sp:[LN:TAL_ANAVA]

[AC:P51778] [GN:TAL]

[OR:

ANABAENA VARIABILIS

]

[EC:2.2.1.2]

[DE:TRANSALDOLASE,]

[SP:P51778]

Contig151G

14924077_c2_857

3119

7245

456

151

480

1.00E−45

gp:[GI:g2599341] [LN:AF010322]

[AC:AF010322] [PN:catabolic

dehydroquinase] [GN:aroQ]

[OR:

Pseudomonas aeruginosa

]

[DE:

Pseudomonas aeruginosa

protein-disulfide reductase (dipZ)

andcatabolic dehydroquinase

(aroQ) genes, complete cds.]

[NT:AroQ]

Contig151G

15114037_c1_629

3120

7246

450

149

283

7.50E−25

pir:[LN:A70684] [AC:A70684]

[PN:hypothetical protein Rv2406c]

[GN:Rv2406c]

[OR:

Mycobacterium tuberculosis

]

Contig151G

15625902_c3_923

3121

7247

957

318

444

6.50E−42

gp:[GI:g1139588] [LN:HIU20964]

[AC:U20964] [PN:ORF2]

[OR:

Haemophilus influenzae

]

[DE:

Haemophilus influenzae

DNA

topoisomerase I (topA) gene,

completecds, putative pyridine

nucleotide transhydrogenase beta

subunit(pntB) gene, partial cds,

ORF2 and ORF3 genes, complete

cds andputative threonyl-tRNA

synthetase (thrS) gene, partial cds.]

[NT:ORF2 has a predicted

molecular weight of 34.5kd and]

Contig151G

15680167_f1_75

3122

7248

1338

445

647

2.00E−63

gp:[GI:d1013489:g1841362]

[LN:D85415] [AC:D85415]

[PN:large subunit of terminat

dioxygenase] [GN:tdnA1]

[OR:

Pseudomonas putida

]

[SR:

Pseudomonas putida

(strain:UCC22) DNA]

[DE:

Pseudomonas putida

gene for

conversion of aniline to catechol.]

Contig151G

157137_f3_330

3123

7249

549

182

309

1.30E−27

sp:[LN:Y328_SYNY3]

[AC:Q55535] [GN:SLR0328]

[OR:SYNECHOCYSTIS SP]

[SR:PCC 6803,] [EC:3.1.3.48]

[DE:(EC 3.1.3.48)] [SP:Q55535]

Contig151G

15906667_f2_284

3124

7250

1029

342

540

4.40E−52

sp:[LN:YE71_HAEIN]

[AC:Q57130:O05065]

[GN:HI1471]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL ABC

TRANSPORTER PERMEASE

PROTEIN HI1471]

[SP:Q57130:O05065]

Contig151G

160126_c1_554

3125

7251

348

115

NO-HIT

Contig151G

16054631_f3_479

3126

7252

258

85

NO-HIT

Contig151G

16290957_f2_286

3127

7253

723

240

122

1.40E−07

sp:[LN:NARP_ECOLI]

[AC:P31802] [GN:NARP]

[OR:

ESCHERICHIA COLI

]

[DE:NITRATE/NITRITE

RESPONSE REGULATOR

PROTEIN NARP] [SP:P31802]

Contig151G

163137_f1_34

3128

7254

216

71

NO-HIT

Contig151G

16411083_f2_311

3129

7255

2571

856

1529

6.90E−157

sp:[LN:MRKC_KLEPN]

[AC:P21647] [GN:MRKC]

[OR:

KLEBSIELLA

PNEUMONIAE

] [DE:OUTER

MEMBRANE USHER PROTEIN

MRKC PRECURSOR]

[SP:P21647]

Contig151G

16485377_f1_33

3130

7256

1440

479

1608

2.90E−165

gp:[GI:d1025288:g2780773]

[LN:AB010203] [AC:AB010203]

[OR:

Leptospira interrogans

]

[SR:

Leptospira interrogans

(sub_species:

icterohaemorrhagiae

]

[DE:

Leptospira interrogans

gene,

19kb region containing 5S rRNA

gene.] [NT:ORF7; putative] [RE:

Contig151G

16485932_f2_180

3131

7257

858

285

415

7.70E−39

sp:[LN:CDSA_PSEAE]

[AC:Q59640] [GN:CDSA:CDS]

[OR:

PSEUDOMONAS

AERUGINOSA

] [EC:2.7.7.41]

[DE:SYNTHASE)] [SP:Q59640]

Contig151G

16509417_f1_24

3132

7258

654

217

220

3.50E−18

sp:[LN:MOBA_HAEIN]

[AC:P44899]

[GN:MOBA:MOB:HI0844]

[OR:

HAEMOPHILUS

INFLUENZAE

] [DE:FA)]

[SP:P44899]

Contig151G

16800055_f3_444

3133

7259

504

167

214

1.50E−17

pir:[LN:A69190] [AC:A69190]

[PN:hypothetical protein

MTH676] [GN:MTH676]

[OR:

Methanobacterium

thermoautotrophicum

]

Contig151G

16835938_c3_989

3134

7260

222

73

NO-HIT

Contig151G

16837676_f3_347

3135

7261

189

62

NO-HIT

Contig151G

17052_f3_443

3136

7262

1065

354

259

2.60E−22

pir:[LN:G70046] [AC:G70046]

[PN:iron-binding protein homolog

yvrC] [GN:yvrC] [OR:

Bacillus

subtilis

]

Contig151G

195327_f3_404

3137

7263

1278

425

NO-HIT

Contig151G

19539131_c2_803

3138

7264

1089

362

680

6.40E−67

sp:[LN:YZ37_SYNY3]

[AC:Q55480] [GN:SLR0537]

[OR:SYNECHOCYSTIS SP]

[SR:PCC 6803,]

[DE:HYPOTHETICAL SUGAR

KINASE SLR0537] [SP:Q55480]

Contig151G

19563556_f3_445

3139

7265

930

309

380

3.90E−35

sp:[LN:PBEF_HUMAN]

[AC:P43490] [GN:PBEF]

[OR:

HOMO SAPIENS

] [DE:PRE-

B CELL ENHANCING FACTOR

PRECURSOR] [SP:P43490]

Contig151G

19642927_f3_475

3140

7266

306

101

NO-HIT

Contig151G

19649092_f2_164

3141

7267

1635

544

937

3.70E−94

sp:[LN:NASD_BACSU]

[AC:P42435]

[GN:NASD:NIRB:NASBC]

[OR:

BACILLUS SUBTILIS

]

[EC:1.6.6.4] [DE:NITRITE

REDUCTASE (NAD(P)H),]

[SP:P42435]

Contig151G

19720313_f3_457

3142

7268

336

111

NO-HIT

Contig151G

199040_f2_218

3143

7269

1335

444

1468

2.00E−150

pir:[LN:NOEC]

[AC:G65059:B25608]

[PN:phosphopyruvate hydratase,:2-

phosphoglycerate

dehydratase:enolase] [GN:eno]

[CL:enolase] [OR:

Escherichia coli

]

[EC:4.2.1.11] [MP:60 min]

Contig151G

1992077_f2_267

3144

7270

435

144

NO-HIT

Contig151G

20000901_c3_925

3145

7271

198

65

NO-HIT

Contig151G

20312917_c3_950

3146

7272

1377

458

278

2.80E−22

gp:[GI:e1216739:g2695718]

[LN:TMESTAX] [AC:AJ001694]

[PN:putative membrane protein]

[GN:estX] [OR:

Thermotoga

maritima

] [DE:

Thermotoga

maritima

estA and estX genes.]

Contig151G

20362953_f2_275

3147

7273

252

83

NO-HIT

Contig151G

20423187_c3_993

3148

7274

699

232

174

2.70E−13

pir:[LN:F69896] [AC:F69896]

[PN:conserved hypothetical

protein yoaM] [GN:yoaM]

[OR:

Bacillus subtilis

]

Contig151G

204388_f3_357

3149

7275

822

273

724

1.40E−71

sp:[LN:LPXA_ECOLI]

[AC:P10440:P78243] [GN:LPXA]

[OR:

ESCHERICHIA COLI

]

[EC:2.3.1.129] [DE:(EC 2.3.1.129)

(UDP-N-

ACETYLGLUCOSAMINE

ACYLTRANSFERASE)]

[SP:P10440:P78243]

Contig151G

20446061_f2_152

3150

7276

2085

694

1025

1.60E−111

sp:[LN:DP3X_ECOLI]

[AC:P06710:Q47721]

[GN:DNAX,DNAZ]

[OR:

ESCHERICHIA COLI

]

[EC:2.7.7.7] [DE:DNA

POLYMERASE III SUBUNITS

GAMMA AND TAU,]

[SP:P06710:Q47721]

Contig151G

20484812_c1_628

3151

7277

225

74

NO-HIT

Contig151G

20521932_f2_304

3152

7278

444

147

NO-HIT

Contig151G

205285_c2_836

3153

7279

501

166

NO-HIT

Contig151G

20737537_c3_938

3154

7280

1113

370

1606

4.80E−165

gp:[GI:g2996615] [LN:AF009224]

[AC:AF009224:M76991:M76990:

M23245:M29848:M29714:M6264

9] [PN:muconate cycloisomerase]

[GN:catB] [FN:conversion of

muconate to (+)-muconolactone]

[OR:Acinetobacter sp. ADP1]

[DE:Acinetobacter sp. ADP1 ben

operon and cat operon,

completesequenec.] [NT:growth

with muconate or benzoate]

Contig151G

20792512_f3_356

3155

7281

564

187

141

8.30E−10

pir:[LN:C71539] [AC:C71539]

[PN:probable (ompH-like outer

membrane protein)] [GN:CT242]

[OR:

Chlamydia trachomatis

]

Contig151G

20906687_f3_458

3156

7282

603

200

NO-HIT

Contig151G

20915802_f2_260

3157

7283

498

165

NO-HIT

Contig151G

20942267_f3_359

3158

7284

759

252

188

8.70E−15

gp:[GI:e1350620:g3880987]

[LN:CEY45F10A]

[AC:AL021488] [GN:Y45F10A.3]

[OR:

Caenorhabditis elegans

]

[DE:

Caenorhabditis elegans

cosmid Y45F10A, complete

sequence.]

Contig151G

210767_f2_197

3159

7285

513

170

NO-HIT

Contig151G

2148438_f3_468

3160

7286

1494

497

862

3.30E−86

gp:[GI:d1029634:g3184190]

[LN:AB011381] [AC:AB011381]

[PN:OprM] [GN:oprM]

[OR:

Pseudomonas aeruginosa

]

[SR:

Pseudomonas aeruginosa

(strain:TNP058) DNA]

[DE:

Pseudomonas aeruginosa

gene

for OprM, complete cds.]

Contig151G

21522705_f2_283

3161

7287

1401

466

963

6.50E−97

sp:[LN:TUB3_AGRVI]

[AC:P70786] [GN:TTUB]

[OR:

AGROBACTERIUM VITIS

]

[DE:PUTATIVE TARTRATE

TRANSPORTER] [SP:P70786]

Contig151G

21597178_c2_740

3162

7288

597

198

145

3.10E−10

sp:[LN:YHGD_BACSU]

[AC:P32398] [GN:YHGD]

[OR:

BACILLUS SUBTILIS

]

[DE:(ORFA)] [SP:P32398]

Contig151G

21602340_f2_158

3163

7289

915

304

NO-HIT

Contig151G

21647512_f2_219

3164

7290

195

64

NO-HIT

Contig151G

21720340_c2_763

3165

7291

567

188

109

2.50E−06

sp:[LN:MARR_SALTY]

[AC:Q56069] [GN:MARR]

[OR:

SALMONELLA

TYPHIMURIUM

]

[DE:MULTIPLE ANTIBIOTIC

RESISTANCE PROTEIN MARR]

[SP:Q56069]

Contig151G

21722557_f2_215

3166

7292

1101

366

746

6.50E−74

gp:[GI:e1391695:g4468762]

[LN:TNAJ9897] [AC:AJ009897]

[PN:N-acetyl-gamma-glutamyl-

phosphate reductase] [GN:argC]

[OR:

Thermotoga neapolitana

]

[EC:1.2.1.38] [DE:

Thermotoga

neapolitana

argC, argJ genes and

partial argH, argBgenes.]

Contig151G

21722937_f1_11

3167

7293

2283

760

1004

1.20E−175

sp:[LN:PHLN_PSEAE]

[AC:P15713] [GN:PLCN]

[OR:

PSEUDOMONAS

AERUGINOSA

] [EC:3.1.4.3]

[DE:(PHOSPHATIDYLCHOLINE

CHOLINEPHOSPHOHYDROLA

SE)] [SP:P15713]

Contig151G

21876907_f2_150

3168

7294

579

192

NO-HIT

Contig151G

21928753_f3_382

3169

7295

1080

359

813

5.10E−81

sp:[LN:AROF_ECOLI]

[AC:P00888] [GN:AROF]

[OR:

ESCHERICHIA COLI

]

[EC:4.1.2.15]

[DE:SYNTHETASE) (3-DEOXY-

D-ARABINO-

HEPTULOSONATE 7-

PHOSPHATE SYNTHASE)]

[SP:P00888]

Contig151G

22038953_f1_45

3170

7296

1263

420

400

3.00E−37

sp:[LN:KYNU_RAT]

[AC:P70712] [OR:

RATTUS

NORVEGICUS

] [EC:3.7.1.3]

[DE:KYNURENINASE, (L-

KYNURENINE HYDROLASE)]

[SP:P70712]

Contig151G

22072218_f1_78

3171

7297

918

305

274

6.70E−24

sp:[LN:FEAR_ECOLI]

[AC:Q47129]

[GN:FEAR:MAOR:MAOB]

[OR:

ESCHERICHIA COLI

]

[DE:TRANSCRIPTIONAL

ACTIVATOR FEAR]

[SP:Q47129]

Contig151G

22079457_c3_1014

3172

7298

393

130

177

1.30E−13

gp:[GI:g3228382]

[LN:CVU84760] [AC:U84760]

[PN:DsrE] [GN:dsrE]

[OR:

Chromatium vinosum

]

[DE:

Chromatium vinosum

dissimilatory siroheme sulfite

reductase alphasubunit (dsrA),

dissimilatory siroheme sulfite

reductase betasubunit (dsrB), DsrE

(dsrE), DsrF (dsrF), DsrH (dsrH),

DsrC (dsrC),DsrM (dsrM), and

DsrK (dsrK) genes, complete cds.]

[NT:similar to YheN: SwissProt

Accession Number P45532]

Contig151G

22131892_c1_555

3173

7299

183

60

NO-HIT

Contig151G

22270893_c2_869

3174

7300

1611

536

1381

3.30E−141

pir:[LN:G70938] [AC:G70938]

[PN:probable fadA2 protein]

[GN:fadA2] [OR:

Mycobacterium

tuberculosis

]

Contig151G

22300162_f1_49

3175

7301

1233

410

814

4.00E−81

pir:[LN:G70301] [AC:G70301]

[PN:N-acetylornithine

aminotransferase] [GN:argD]

[OR:

Aquifex aeolicus

]

Contig151G

22353177_c2_815

3176

7302

474

157

233

1.50E−19

sp:[LN:Y531_METJA]

[AC:Q57951] [GN:MJ0531]

[OR:

METHANOCOCCUS

JANNASCHII

]

[DE:HYPOTHETICAL PROTEIN

MJ0531] [SP:Q57951]

Contig151G

22366568_c2_765

3177

7303

1323

440

402

1.80E−37

gp:[GI:g3253207] [LN:AF029714]

[AC:AF029714:Z71175]

[PN:PhaK] [GN:phaK]

[OR:

Pseudomonas putida

]

[DE:

Pseudomonas putida

repressor

(phaN), regulatory protein

(phaM), enoyl-CoA hydratase I

(phaA), enoyl-CoA hydratase II

(phaB), 3-hydroxyacyl-CoA

dehydrogenase (phaC),

ketothiolase (phaD), phenylacetyl-

CoA ligase (phaE), ring-oxidation

complex protein 1(phaF), ring-

oxidation complex protein 2

(phaG), ring-oxidationcomplex

protein 3(phaH), ring-oxidation

complex protein 4(phaI), permease

(phaJ), channel-forming protein

(phaK), and ring-openingenzyme

(phaL) genes, complete cds.]

[NT:Channel-forming protein]

Contig151G

22447125_c3_985

3178

7304

1305

434

1381

3.30E−141

sp:[LN:BRAZ_PSEAE]

[AC:P25185] [GN:BRAZ]

[OR:

PSEUDOMONAS

AERUGINOSA

] [DE:(LIV-III)]

[SP:P25185]

Contig151G

22460887_f3_418

3179

7305

216

71

NO-HIT

Contig151G

22471912_f1_122

3180

7306

687

228

126

4.40E−07

pir:[LN:B70391] [AC:B70391]

[PN:transcription regulator

TetR/AcrR family] [GN:acrRI]

[OR:

Aquifex aeolicus

]

Contig151G

22477181_f2_295

3181

7307

222

73

128

2.00E−08

sp:[LN:TTR_PSESY]

[AC:P16966] [GN:TTR]

[OR:

PSEUDOMONAS

SYRINGAE

] [EC:2.3.1.-]

[DE:ACETYLTRANSFERASE.

(TABTOXIN RESISTANCE

PROTEIN)] [SP:P16966]

Contig151G

22533438_c1_626

3182

7308

186

61

NO-HIT

Contig151G

22663907_fl_68

3183

7309

765

254

1223

1.80E−124

gp:[GI:g141782]

[LN:ACCPCAOP]

[AC:L05770:U04359:M33798:U2

0284:U11554:L13114:L03407]

[PN:protocatechuate 3,4-

dioxygenase beta subunit]

[GN:pcaH] [OR:Acinetobacter sp.

ADPI] [EC:1.99.2.3]

[DE:Acinetobacter sp. ADPI pca-

qui-pob supraoperonic cluster,

completesequence.] [NT:PO]

Contig151G

22673793_f1 _ 140

3184

7310

1023

340

408

4.20E−38

sp:[LN:MRKD_KLEPN]

[AC:P21648] [GN:MRKD]

[OR:

KLEBSIELLA

PNEUMONIAE

] [DE:FIMBRIA

ADHESIN PROTEIN

PRECURSOR] [SP:P21648]

Contig151G

22771890_f2_263

3185

7311

744

247

206

1.10E−16

pir:[LN:D70044] [AC:D70044]

[PN:transcription regulator GntR

family homolog yvoA] [GN:yvoA]

[CL:transcription regulator GntR]

[OR:

Bacillus subtilis

]

Contig151G

22845327_f2_289

3186

7312

1548

515

971

9.30E−98

pir:[LN:B71726] [AC:B71726)

[PN:multidrug resistance protein B

(emrB) RP157] [GN:emrB:RP157]

[OR:

Rickettsia prowazekii

]

Contig151G

22860802_c3_882

3187

7313

933

310

423

1.10E−39

pir:[LN:B69445] [AC:B69445]

[PN:conserved hypothetical

protein AF1563]

[OR:

Archaeoglobus fulgidus

]

Contig151G

22928427_f1_27

3188

7314

528

175

320

9.00E−29

pir:[LN:F70918] [AC:F70918]

[PN:probable regulatoryprotein]

[GN:Rv3095] [OR:

Mycobacterium

tuberculosis

]

Contig151G

22931301_c3_928

3189

7315

1398

465

578

4.10E−56

sp:[LN:ILL2_ARATH)

[AC:P54970] [GN:ILL2]

[OR:

ARABIDOPSIS

THALIANA

] [SR:,MOUSE-EAR

CRESS] [DE:IAA-AMINO ACID

HYDROLASE HOMOLOG 2

PRECURSOR] [SP:P54970]

Contig151G

23443912_f1_62

3190

7316

432

143

NO-HIT

Contig151G

23444517_c3_940

3191

7317

1050

349

1288

2.40E−131

pir:[LN:S47293)

[AC:S47293:S70086]

[PN:catechol 1,2-dioxygenase,]

[GN:catA] [CL:catechol 1,2-

dioxygenase] [OR:

Acinetobacter

catcoaceticus

] [EC:1.13.11.1]

Contig151G

23474052_f2_294

3192

7318

285

94

NO-HIT

Contig151G

23522911_c2_703

3193

7319

264

87

NO-HIT

Contig151G

23557676_f3_423

3194

7320

1497

498

2221

3.20E−230

sp:[LN:DHGB_ACICA]

[AC:P13650] [GN:GDHB]

[OR:

ACINETOBACTER

CALCOACETICUS

]

[EC:1.1.99.17] [DE:(EC

1.1.99.17)] [SP:P13650]

Contig151G

23600206_f1_96

3195

7321

732

243

121

4.90E−05

gp:[GI:g340613)

[LN:LEIKPMURF2] [AC:L07545]

[GN:MURF2] [OR:Kinetoplast

Leishmania tarentolae]

[SR:Kinetoplast Leishmania

tarentolae (strain UC, organelle

Kinetoplas] [DE:Leishmania

tarentolae kinetoplast

mitochondrial MURF2 edited

mRNA,comptete cds.] [NT:A ‘c’

was insertcd after nt 369 (= nt

10459 in]

Contig151G

23634675_c1_505

3196

7322

681

226

NO-HIT

Contig151G

23634677_f2_291

3197

7323

1167

388

NO-HIT

Contig151G

23634702_f2_229

3198

7324

1170

389

457

2.70E−43

pir:[LN:E70918] [AC:E70918]

[PN:hypothetical protein Rv3094c]

[GN:Rv3094c]

[OR:

Mycobacterium tuberculosis

]

Contig151G

23651512_f3_397

3199

7325

759

252

596

5.10E−58

sp:[LN:YT29_MYCTU]

[AC:P71564]

[GN:MTCY10D7.29C]

[OR:

MYCOBACTERIUM

TUBERCULOSIS

] [EC:1.—.—.—]

[DE:PUTATIVE

OXIDOREDUCTASE

CY10D7.29C,] [SP:P71564]

Contig151G

23703330_f3_389

3200

7326

1398

465

2040

4.90E−211

gp:[GI:g3172116]

[LN:ACCPCAOP]

[AC:L05770:U04359:M33798:U2

0284:U11554:L13114:L03407]

[PN:putative transport protein]

[GN:pcaK] [OR:Acinetobacter sp.

ADP1] [DE:Acinetobacter sp.

ADP1 pca-qui-pob supraoperonic

cluster, completesequence.]

Contig151G

23710952_c2_810

3201

7327

420

139

249

3.00E−21

sp:[LN:GLCG_ECOLI]

[AC:P45504] [GN:GLCG]

[OR:

ESCHERICHIA COLI

]

[DE:GLCG PROTEIN]

[SP:P45504]

Contig151G

23712762_c1_571

3202

7328

720

239

288

2.20E−25

sp:[LN:DGOR_ECOLI)

[AC:P31460:P76735:O32529]

[GN:DGOR] [OR:

ESCHERICHIA

COLI

] [DE:GALACTONATE

OPERON TRANSCRIPTIONAL

REPRESSOR)

[SP:P31460:P76735:O32529]

Contig151G

23720912_f2_253

3203

7329

942

313

359

6.60E−33

gp:[GI:g1139588] [LN:HIU20964]

[AC:U20964] [PN:ORF2]

[OR:

Haemophilus influenzae

]

[DE:

Haemophilus influenzae

DNA

topoisomerase I (topA) gene,

completecds, putative pyridine

nucleotide transhydrogenase beta

subunit(pntB) gene, partial cds,

ORF2 and ORF3 genes, complete

cds and putative threonyl-tRNA

synthetase (thrS) gene, partial cds.]

[NT:ORF2 has a predicted

molecular weight of 34.5 kd and]

Contig151G

23726588_f1_32

3204

7330

1026

341

533

2.40E−51

sp:[LN:GALE_BACSU]

[AC:P55180] [GN:GALE]

[OR:

BACILLUS SUBTILIS

]

[EC:5.1.3.2] [DE:GALACTOSE 4-

EPIMEPASE)] [SP:P55180]

Contig151G

23850336_f1_35

3205

7331

474

157

NO-HIT

Contig151G

23954700_c2_831

3206

7332

1557

518

1578

4.40E−162

sp:[LN:NTRC_ECOLI]

[AC:P06713]

[GN:GLNG:NTRC:GLNT]

[OR:

ESCHERICHIA COLI

]

[DE:NITROGEN REGULATION

PROTEIN NR(1)] [SP:P06713)

Contig151G

24067537_c1_489

3207

7333

1593

530

1230

3.30E−125

pir:[LN:C70655] [AC:C70655]

[PN:probable monooxygenase]

[GN:Rv3854c]

[OR:

Mycobacterium tuberculosis

]

Contig151G

24071001_c3_1044

3208

7334

351

117

104

7.50E−05

sp:[LN:Y190_HELPY]

[AC:P56117] [GN:HP0190]

[OR:

HELICOBACTER PYLORI

]

[SR:,

CAMPYLOBACTER

PYLORI

] [DE:HYPOTHETICAL

PROTEIN HP0190] [SP:P56117]

Contig151G

24100427_c2_718

3209

7335

207

68

NO-HIT

Contig151G

24218780_c3_930

3210

7336

1323

440

742

1.70E−73

pir:[LN:F70982] [AC:F70982]

[PN:probable dehydrogenase]

[GN:Rv1812c]

[OR:

Mycobacterium tuberculosis

]

Contig151G

24218902_f3_405

3211

7337

1518

505

1094

8.60E−111

sp:[LN:FEAB_ECOLI]

[AC:P80668:P46884:P77637:O32

557] [GN:FEAB:PADA:MAOB]

[OR:

ESCHERICHIA#COLI

]

[EC:1.2.1.39]

[DE:PHENYLACETALDEHYDE

DEHYDROGENASE, (PAD)]

[SP:P80668:P46884:P77637:O32557]

Contig151G

24225000_c1_681

3212

7338

240

79

NO-HIT

Contig151G

24225052_f2_189

3213

7339

261

86

NO-HIT

Contig151G

24227212_c1_558

3214

7340

186

61

NO-HIT

Contig151G

24236375_f2_271

3215

7341

1290

429

NO-HIT

Contig151G

24256952_c1_567

3216

7342

438

145

186

1.40E−14

gp:[GI:g1841790] [LN:SPU86147]

[AC:U86147] [PN:mercuric

resistance operon regulatory

protein] [GN:merR]

[OR:Synechococcus PCC7942]

[DE:Synechococcus PCC7942

UDP-N-acetylmuramate-alanine

ligase (murC)gene, partial cds,

UDP-N-

acetylenolpyruvylglucosamine

reductase(murB), and mercuric

resistance operon regulatory

protein (merR)genes, complete

cds.]

Contig151G

24265811_c3_1042

3217

7343

471

156

241

2.10E−20

sp:[LN:Y531_METJA]

[AC:Q57951] [GN:MJ0531]

[OR:

METHANOCOCCUS

JANNASCHII

]

[DE:HYPOTHETICAL PROTEIN

MJ0531] [SP:Q57951]

Contig151G

24299002_c2_806

3218

7344

294

97

96

7.50E−05

pir:[LN:S57899]

[AC:S57899:S50869]

[PN:hypothetical protein I]

[OR:

Pseudomonas aeruginosa

]

Contig151G

24300017_f1_126

3219

7345

954

317

224

8.30E−18

sp:[LN:MPC2_ALCEU]

[AC:P17296] [GN:MCPII]

[OR:

ALCALIGENES

EUTROPHUS

] [EC:1.13.11.2]

[DE:DIOXYGENASE II)]

[SP:P17296]

Contig151G

24322188_f3_315

3220

7346

207

68

NO-HIT

Contig151G

24328128_f2_272

3221

7347

4860

1619

438

2.60E−36

sp:[LN:FRPC_NEIME]

[AC:P55127] [GN:FRPC]

[OR:

NEISSERIA

MENINGITIDIS

] [DE:IRON-

REGULATED PROTEIN FRPC]

[SP:P55127]

Contig151G

24339463_f1_103

3222

7348

1413

470

268

7.40E−21

sp:[LN:YHAU_ECOLI]

[AC:P42613] [GN:YHAU]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 49.0 KD

PROTEIN IN RNPB-SOHA

INTERGENIC REGION]

[SP:P42613]

Contig151G

24392337_c3_920

3223

7349

1800

599

721

2.90E−71

pir:[LN:S76895] [AC:S76895]

[PN:hypothetical protein]

[CL:dihydroxy-acid dehydratase]

[OR:Synechocystis sp.] [SR:PCC

6803,,PCC 6803] [SR:PCC 6803,]

Contig151G

24395642_c2_711

3224

7350

219

72

NO-HIT

Contig151G

24406327_f1_14

3225

7351

1062

353

631

9.90E−62

sp:[LN:MURB_HAEIN]

[AC:P44605]

[GN:MURB:H10268]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:1.1.1.158]

[DE:ACETYLMURAMATE

DEHYDROGENASE)]

[SP:P44605]

Contig151G

24413427_f2_224

3226

7352

1383

460

2004

3.20E−207

pir:[LN:139524] [AC:139524]

[PN:probable porin] [GN:quiX]

[CL:

Pseudomonas porin

oprB]

[OR:

Acinetobacter calcoaceticus

]

Contig151G

24414578_f3_358

3227

7353

183

60

107

3.30E−06

sp:[LN:YCGJ_ECOLI]

[AC:P76001] [GN:YCGJ]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 13.4 KD

PROTEIN IN MINC-SHEA

INTERGENIC REGION

PRECURSOR] [SP:P76001]

Contig151G

24415927_f1_26

3228

7354

927

308

387

7.10E−36

sp:[LN:MOCB_SYNP7j

[AC:Q56208] [GN:MOACB]

[OR:SYNECHOCOCCUS SP]

[SR:PCC 7942,ANACYSTIS

NIDULANS R2]

[DE:MOLYBDENUM

COFACTOR BIOSYNTHESIS

PROTEIN CB] [SP:Q56208]

Contig151G

24415937_f2_188

3229

7355

219

72

113

7.70E−07

sp:[LN:YCGJ_ECOLI]

[AC:P76001] [GN:YCGJ]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 13.4 KD

PROTEIN IN MINC-SHEA

INTERGENIC REGION

PRECURSOR] [SP:P76001]

Contig151G

24415952_f2_292

3230

7356

972

323

305

3.50E−27

sp:[LN:PHO2_YARLI]

[AC:P30887] [GN:PHO2]

[OR:

YARROWIA LIPOLYTICA

]

[SR:,

CANDIDA LIPOLYTICA

]

[EC:3.1.3.2] [DE:ACID

PHOSPHATASE PRECURSOR.]

[SP:P30887]

Contig151G

24422131_f3_334

3231

7357

1194

397

337

1.40E−30

gp:[GI:e311274:g2072116]

[LN:ECHCAT] [AC:Y11071]

[PN:putative transporter of 3-

phenylpropionic acid] [GN:hcaT]

[OR:

Escherichia coli

] [DE:

E.coli

hcaT gene.]

Contig151G

24492042_c1_631

3232

7358

2886

961

1241

1.70E−148

sp:[LN:PTF1_RHOCA]

[AC:P23388] [GN:FRUB(HI)]

[OR:

RHODOBACTER

CAPSULATUS

]

[SR:,

RHODOPSEUDOMONAS

CAPSULATA

]

[EC:2.7.3.9:2.7.1.69] [DE:(EIII-

FRU)]] [SP:P23388]

Contig151G

24506313_f2_282

3233

7359

993

330

834

3.10E−83

pir:[LN:139563] [AC:139563]

[PN:hypothetical protein 5]

[OR:

Alcaligenes eutrophus

]

Contig151G

24507760_c3_877

3234

7360

1128

375

1751

2.10E−180

pir:[LN:S75250] [AC:S75250]

[PN:alcohol dehydrogenase,

s110990:class III alcohol

dehydrogenase:protein

s110990:class III alcohol

dehydrogenase:protein s110990]

[CL:alcohol dehydrogenase:long-

chain alcohol dehydrogenase

homology] [OR:Synechocystis sp.]

[SR:PCC 6803,, PCC 6803]

[SR:PCC 6803,] [EC:1.1.1.1]

Contig151G

24507765_f2_226

3235

7361

1257

418

1002

4.80E−101

gp:[GI:g1938424]

[LN:CELK09H11] [AC:U97002]

[GN:K09H11.1]

[OR:

Caenorhabditis elegans

]

[SR:

Caenorhabditis elegans

strain = Bristol N2]

[DE:

Caenorhabditis elegans

cosmid K09H11.] [NT:similar to

acyl-CoA dehydrogenases and

epoxide]

Contig151G

24510890_f2_270

3236

7362

693

230

358

8.40E−33

gp:[GI:e1245739:g2808768]

[LN:SC7H1] [AC:AL021411]

[PN:transferase] [GN:SC7H1.10]

[OR:

Streptomyces coelicolor

]

[DE:

Streptomyces coelicolor

cosmid 7H1.] [NT:SC7H1.10,

probable transferase, len: 219;]

Contig151G

24641062_c1_503

3237

7363

681

226

111

0.00017

gp:[GI:g1707290]

[LN:BBU80960]

[AC:U80960:L79960]

[PN:putative outer surface protein]

[GN:ospF] [OR:

Borrelia

burgdorferi

] [SR:Lyme disease

spirochete] [DE:

Borrelia

burgdorferi

strain CA12 putative

outer membrane protein(ospE)

gene, complete cds and putative

outer surface protein (ospF)gene,

partial cds.] [RE:

Contig151G

24641063_f1_98

3238

7364

318

105

NO-HIT

Contig151G

24644040_c1_593

3239

7365

927

308

254

8.90E−22

gp:[GI:g3643996] [LN:AF087482]

[AC:AF087482] [PN:putative

regulatory protein] [GN:ohbR]

[OR:

Pseudomonas aeruginosa]

[DE:

Pseudomonas aeruginosa clcC

and ohbH genes, Lys-R type

regulatoryprotein (clcR),

chlorocatechol-1,2-dioxygenase

(clcA),chloromuconate

cycloisomerase (clcB),

dienetactone hydrolase (clcD),

maleylacetate reductase (clcE),

transposase (tnpA), ATP-binding

protein (tnpB), putative regulatory

protein (ohbR), o-halobenzoate

dioxygenase reductase (ohbA), o-

halobenzoatedioxygenase alpha

subunit (ohbB), o-halobenzoate

dioxygenase betasubunit (ohbC), o-

halobenzoate dioxygenase

ferredoxin (ohbD), putative

membrane spanning protein

(ohbE), ATP-binding

protein (ohbF), putative substrate

binding protein (ohbG), and

putativedioxygenase genes,

complete cds; and unknown gene.]

[NT:similar to Lys-R type

regulatory proteins.]

Contig151G

24647175_c2_804

3240

7366

231

76

NO-HIT

Contig151G

24647632_c1_570

3241

7367

903

300

NO-HIT

Contig151G

24651640_c2_732

3242

7368

825

274

298

1.90E−26

gp:[GI:e1331982:g4106613]

[LN:YP102KB] [AC:AL031866]

[OR:

Yersinia pestis

] [DE:

Yersinia

pestis

102 kbases unstable region:

from 1 to 119443.] [NT:0RF45,

len = 289, unknown]

Contig151G

24796893_c3_983

3243

7369

549

182

364

2.00E−33

sp [LN:YDHD_ECOLI]

[AC:P37010:P77424]

[GN:YDHD] [OR:

ESCHERICHIA

COLI

] [DE:12.9 KD PROTEIN IN

LHR-SODB INTERGENIC

REGION] [SP:P37010:P77424]

Contig151G

24814682_c3_969

3244

7370

693

230

447

3.10E−42

sp:[LN:YCAP_ECOLI)

[AC:P75839] [GN:YCAP]

[OR:

ESCHERICHIA COLI

)

[DE:HYPOTHETICAL 26.3 KD

PROTEIN IN FOCA-SERC

INTERGENIC REGION]

[SP:P75839]

Contig151G

24900936_f1_3

3245

7371

501

166

309

1.30E−27

gp:[GI:g1816639] [LN:BJU85623]

[AC:U85623] [PN:leucine-

responsive regulatory protein]

[GN:lrp] [FN:transcription

regulator] [OR:

Bradyrhizobium

japonicum

] [DE:

Bradyrhizobium

japonicum leucine-responsive

regulatory protein(lrp) gene,

complete cds.] [NT:LRP]

Contig151G

25392915_f3_388

3246

7372

819

272

916

6.30E−92

gp:[GI:g3172115]

[LN:ACCPCAOP]

[AC:L05770:U04359:M33798:U2

0284:U11554:L13114:L03407]

[PN:beta-ketoadipate enol-lactone

hydrolase] [GN:pcaD]

[OR:Acinetobacter sp. ADP1]

[EC:3.1.1.24] [DE:Acinetobacter

sp. ADP1 pca-qui-pob

supraoperonic cluster,

completesequence.] [NT:ELH]

Contig151G

25595068_f3_392

3247

7373

1464

487

2155

3.20E−223

pir:[LN:139523] [AC:139523]

[PN:dehydroshikimate

dehydratase.] [GN:quiC]

[OR:

Acinetobacter calcoaceticus

]

[EC:4.2.1.—]

Contig151G

25648337_f2_163

3248

7374

2574

857

2724

1.60E−283

sp:[LN:NIRB_KLEPN]

[AC:Q06458] [GN:NASB]

[OR:

KLEBSIELLA

PNEUMONIAE

] [EC:1.6.6.4]

[DE:NITRITE REDUCTASE

(NAD(P)H) LARGE SUBUNIT,]

[SP:Q06458]

Contig151G

25915888_f2_144

3249

7375

231

76

NO-HIT

Contig151G

25955086_c1_501

3250

7376

270

89

NO-HIT

Contig151G

25980288_c1_646

3251

7377

1128

375

655

2.80E−64

sp:[LN:NTRB_VIBAL]

[AC:P19906] [GN:NTRB]

[OR:VIBRIO ALGINOLYTICUS]

[EC:2.7.3.—] [DE:NITROGEN

REGULATION PROTEIN

NTRB,] [SP:P19906]

Contig151G

26031915_f1_77

3252

7378

1002

333

432

1.20E−40

sp:[LN:NTAB_CHEHE]

[AC:P54990] [GN:NTAB:NMOB]

[OR:CHELATOBACTER

HEINTZII] [EC:1.14.13.—]

[DE:MONOOXYGENASE

COMPONENT B)(NTA-MO B)]

[SP:P54990]

Contig151G

26032830_f3_353

3253

7379

780

259

740

2.80E−73

gp:[GI:d1033306:g3417448]

[LN:AB010087] [AC:AB010087]

[PN:UMP kinase] [GN:pyrH]

[OR:

Pseudomonas aeruginosa

]

[SR:

Pseudomonas aeruginosa

(strain:PAO1) DNA]

[DE:

Pseudomonas aeruginosa

rpsB, tsf, pyrH, frr genes for

ribosomalprotein S2, elongation

factor Ts, UMP kinase, ribosome

recyclingfactor, complete cds.]

Contig151G

260942_cl_499

3254

7380

648

215

286

2.80E−24

sp:[LN:Y002_MYCTU]

[AC:Q10384] [GN:MTCY190.02]

[OR:MYCOBACTERIUM

TUBERCULOSIS]

[DE:HYPOTHETICAL 69.2 KD

PROTEIN CY190.02]

[SP:Q10384]

Contig151G

26172005_f1_95

3255

7381

618

205

118

5.90E−06

pir:[LN:G70325] [AC:G70325]

[PN:transcription regulator

TetR/AcrR family] [GN:acrR3]

[OR:

Aquifex aeolicus

]

Contig151G

26174076_f3_447

3256

7382

828

275

297

2.50E−26

pir:[LN:S75926] [AC:S75926]

[PN:hypothetical protein]

[OR:Synechocystis sp.] [SR:PCC

6803, , PCC 6803] [SR:PCC 6803,]

Contig151G

26207805_f2_306

3257

7383

1344

447

681

5.00E−67

sp:[LN:ACRE_ECOLI]

[AC:P24180] [GN:ACRE:ENVC]

[OR:

ESCHERICHIA COLI

]

[DE:ACRIFLAVIN

RESISTANCE PROTEIN E

PRECURSOR (ENVC

PROTEIN)] [SP:P24180]

Contig151G

26369028_f2_171

3258

7384

492

163

246

6.20E−21

gp:[GI:g4262373] [LN:AF091871]

[AC:AF091871]

[PN :molybdopterin-synthase large

subunit] [GN:MOCS2]

[FN:molybdenum cofactor

biosynthesis] [OR:

Homo sapiens

]

[DE:

Homo sapiens

molybdopterin-

synthase small and large subunit

(MOCS2)bicistronic mRNA,

complete cds.] [NT:MOCS2B]

Contig151G

26445292_f2_198

3259

7385

207

68

NO-HIT

Contig151G

26578192_f3_396

3260

7386

822

273

NO-HIT

Contig151G

26597705_c1_661

3261

7387

426

141

257

4.30E−22

gp:[GI:g1399830] [LN:SPU59235]

[AC:U59235] [PN:biotin carboxyl

carrier protein] [GN:accB]

[OR:Synechococcus PCC7942]

[DE:Synechococcus PCC7942

ORF327, ORF249, ORF376,

elongation factor P(efp), biotin

carboxyl carrier protein (accB),

ORF1000, and ORF409genes,

complete cds.] [NT:the only biotin-

containing protein in

Synechococcus]

Contig151G

26750211_f2_233

3262

7388

504

167

132

7.50E−09

gp:[GI:e311034:g758211]

[LN:PCCBDABC] [AC:X79076]

[PN:2-halobenzoate 1,2-

dioxygenase] [GN:cbdB]

[OR:

Burkholderia cepacia

]

[DE:

P.cepacia

(2CBS) cbdA, cbdB

and cbdC genes.]

Contig151G

26752177_f1_37

3263

7389

573

190

617

3.00E−60

gp:[GI:d1033307:g3417449]

[LN:AB010087] [AC:AB010087]

[PN:ribosome recycling factor]

[GN:frr] [OR:

Pseudomonas

aeruginosa

] [SR:

Pseudomonas

aeruginosa

(strain:PAO1) DNA]

[DE:

Pseudomonas aeruginosa

rpsB, tsf, pyrH, frr genes for

ribosomalprotein S2, elongation

factor Ts, UMP kinase, ribosome

recyclingfactor, complete cds.]

Contig151G

26753175_f2_223

3264

7390

873

290

936

4.80E−94

pir:[LN:139522] [AC:139522]

[PN:3-dehydroquinate

dehydratase,, catabolic] [GN:quiB)

[CL:3-dehydroquinate

dehydratase:3-dehydroquinate

dehydratase homology]

[OR:

Acinetobacter calcoaceticus

]

[EC:4.2.1.10]

Contig151G

26775312_f1_2

3265

7391

360

119

132

1.60E−07

sp:[LN:ATMA_SALTY]

[AC:P36640] [GN:MGTA]

[OR:

SALMONELLA

TYPHIMURIUM

] [EC:3.6.1.—]

[DE:MG(2+) TRANSPORT

ATPASE, P-TYPE 1,]

[SP:P36640]

Contig151G

26828193_f3_474

3266

7392

1296

431

501

7.60E−66

gp:[GI:g598251]

[LN:MBOOMPE] [AC:L31788]

[PN:outer membrane protein E]

[OR:

Moraxella catarrhalis

]

[SR:

Moraxella catarrhalis

(strain

25240) DNA] [DE:

Moraxella

catarrhalis

outer membrane protein

E gene, complete cds.]

Contig151G

26830318_f2_222

3267

7393

1224

407

1770

2.00E−182

gp:[GI:g141777]

[LN:ACCPCAOP)

[AC:L05770:U04359:M33798:U2

0284:U11554:L13114:L03407]

[PN:beta-ketoadipyl CoA thiolase]

[GN:pcaF] [OR:Acinetobacter sp.

ADP1) [EC:3.1.2.000]

[DE:Acinetobacter sp. ADP1 pca-

qui-pob supraoperonic cluster,

completesequence.]

Contig151G

26831250_c1_679

3268

7394

1200

399

797

2.60E−79

pir:[LN:D64895] [AC:D64895]

[PN:probable membrane protein

b1433] [OR:

Escherichia coli

]

Contig151G

281282_f2_196

3269

7395

189

62

NO-HIT

Contig151G

2853167_cl _680

3270

7396

1632

543

523

2.80E−50

pir:[LN:S44975]

[AC:S69834:S44975] [PN:lmrC

protein] [GN:lmrC] [CL:ATP-

binding cassette homology]

[OR:

Streptomyces lincolnensis

]

Contig151G

2867253_c1_493

3271

7397

774

257

392

2.10E−36

sp:[LN:YCBL_BACSU]

[AC:P42244] [GN:YCBL]

[OR:BACILLUS SUBTILIS]

[DE:HYPOTHETICAL 25.8 KD

SENSORY TRANSDUCTION

PROTEIN (ORF11)] [SP:P42244]

Contig151G

2929206_f2_209

3272

7398

189

62

NO-HIT

Contig151G

29301632_c2_859

3273

7399

642

213

143

5.10E−10

gp:[GI:g3293540] [LN:AF072709]

[AC:AF072709] [PN:putative

transcriptional regulator]

[OR:

Streptomyces lividans

]

[DE:

Streptomyces lividans

amplifiable element AUD4:

putativetranscriptional regulator,

putative ferredoxin, putative

cytochromeP450 oxidoreductase,

and putative oxidoreductase genes,

completecds; and unknown genes.]

[NT:ORF2; similar to

transcriptional repressor]

Contig151G

2933127_f1_65

3274

7400

729

242

453

7.20E−43

sp:[LN:YGBP_HAEIN]

[AC:O05029] [GN:HI0672]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

HI0672] [SP:O05029]

Contig151G

29354807_f2_151

3275

7401

1314

437

342

2.80E−40

pir:[LN:A44832] [AC:A44832]

[PN:esterase estA]

[OR:Pseudomonas sp.]

Contig151G

2938125_c2_853

3276

7402

603

200

305

3.50E−27

pir:[LN:S52249]

[AC:S70540:S52249]

[PN:response regulator nasT]

[GN:nasT] [CL:response regulator

homology] [OR:

Azotobacter

vinelandii

]

Contig151G

29421890_f2_211

3277

7403

3027

1008

1175

2.20E−119

gp:[GI:g4377308] [LN:AE001678]

[AC:AE001678:AE001363]

[PN:Zinc Metalloprotease

(insulinase family)]

[GN:CPn0981] [OR:

Chlamydia

pneumoniae

] [DE:

Chlamydia

pneumoniae

section 94 of 103 of

the complete genome.]

Contig151G

29459837_c2_839

3278

7404

363

120

NO-HIT

Contig151G

29488387_f1_111

3279

7405

846

281

416

6.00E−39

sp:[LN:YC72_HAEIN]

[AC:Q57243:O05049]

[GN:HI1272]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL ABC

TRANSPORTER ATP-BINDING

PROTEIN HI1272]

[SP:Q57243:O05049]

Contig151G

29854192_f1_56

3280

7406

699

232

156

960E−17

gp:[GI:g4155298] [LN:AE001505]

[AC:AE001505:AE001439]

[PN:putative] [6N:jhp0742]

[OR:

Helicobacter pylori

J99]

[DE:

Helicobacter pylori

, strain J99

section 66 of 132 of the

completegenome.] [NT:similar to

H. pylori

26695 gene HP0806]

Contig151G

29901017_f1_108

3281

7407

900

299

604

7.20E−59

gp:[6I:d1035162:g3845577]

[LN:AB015439] [AC:AB015439]

[PN:D-threonine dehydrogenase]

[GN:dtdS] [OR:

Pseudomonas

cruciviae

] [SR:

Pseudomonas

cruciviae

(strain:IFO12047)DNA]

[DE:

Pseudomonas cruciviae

gene

for D-threonine dehydrogenase,

partialcds.] [RE:

Contig151G

30470890_c1_674

3282

7408

615

204

110

0.00015

gp:[GI:e1420006:g4539179]

[LN:SC6A5] [AC:AL049485]

[PN:putative transcriptional

rcgulator] [6N:SC6A5.24c]

[OR:

Streptomyces coelicolor

]

[DE:

Streptomyces coelicolor

cosmid 6A5.] [NT:SC6A5.24c,

probable transcriptional regulator,

len:]

Contig1516

30503512_c2_807

3283

7409

432

143

NO-HIT

Contig151G

30735912_f3_321

3284

7410

735

244

398

4.90E−37

sp:[LN:Y014_SYNY3]

[AC:Q57208] [6N:SLR0014]

[OR:SYNECHOCYSTIS SP]

[SR:PCC 6803,]

[DE:HYPOTHETICAL 25.5 KD

PROTEIN SLR0014] [SP:Q57208]

Contig151G

31269787_c1_638

3285

7411

519

172

228

5.00E−19

sp:[LN:RECX_VIBCH]

[AC:Q56647] [GN:RECX]

[OR:

VIBRIO CHOLERAE

]

[DE:REGULATORY PROTEIN

RECX] [SP:Q56647]

Contig151G

31445302_f2_288

3286

7412

1098

365

460

1.30E−43

gp:[G1:g3414725] [LN:AF047693]

[AC:AF047693] [PN:multidrug

resistance efflux pump homolog

PmrA] [GN:pmrA]

[OR:

Pseudomonas aeruginosa

]

[DE:

Pseudomonas aeruginosa

multidrug resistance efflux pump

homologPmrA (pmrA) and

multidrug resistance efflux pump

homolog PmrB(pmrB) genes,

complete cds.] [NT:membrane

fusion protein; similar to EmrA of]

Contig151G

3151875_c2_860

3287

7413

1731

576

738

7.10E−88

pir:[LN:C69794] [AC:C69794]

[PN:glutamate synthase

(ferredoxin) homolog yerD]

[GN:yerD] [OR:

Bacillus subtilis

]

Contig151G

31645682_c3_888

3288

7414

594

197

158

1.30E−11

pir:[LN:C70065] [AC:C70065]

[PN:transcription regulator MarR

family homolog ywoH]

[GN:ywoH] [OR:

Bacillus subtilis

]

Contig151G

3166031_f3_403

3289

7415

843

280

355

1.80E−32

sp:[LN:FABG_ECOLI]

[AC:P25716:P78221] [GN:FABG]

[OR:

ESCHERICHIA COLI

]

[EC:1.1.1.100] [DE:ACYL

CARRIER PROTEIN

REDUCTASE)]

[SP:P25716:P78221]

Contig151G

3183552_f3_325

3290

7416

915

304

382

2.40E−35

gp:[GI:e1287199:g3063881]

[LN:MLCB1883] [AC:AL022486]

[PN:hypothetical protein

MLCB1883.17c]

[GN:MLCB1883.17c]

[OR:

Mycobacterium leprae

]

[DE:

Mycobacterium leprae

cosmid

B1883.] [NT:MLCB1883.17c,

unknown, len: 280; equivalent to]

Contig151G

32225001_c3_1011

3291

7417

351

116

NO-HIT

Contig151G

32454511_f1_58

3292

7418

420

139

272

1.10E−23

sp:[LN:YLJA_ECOLI]

[AC:P75832] [GN:YLJA]

[OR:

ESCHERICHIA COLI

]

[DE:12.2 KD PROTEIN IN CSPD-

CLPA INTERGENIC REGION]

[SP:P75832]

Contig151G

32595337_f3_395

3293

7419

468

155

189

6.80E−15

gp:[GI:g2822322] [LN:AF016485]

[AC:AF016485]

[OR:Halobacterium sp. NRC-1]

[DE:Halobacterium sp. NRC-1

plasmid pNRC100, complete

plasmid sequence.] [NT:ORF

H0549; same as H1813 in IR-L]

Contig151G

32656288_f3_446

3294

7420

651

216

289

3.10E−25

sp:[LN:Y037_MYCPN]

[AC:P75067]

[OR:

MYCOPLASMA

PNEUMONIAE

]

[DE:HYPOTHETICAL PROTEIN

MG037 HOMOLOG] [SP:P75067]

Contig151G

32775_f3_320

3295

7421

2442

813

2585

8.60E−269

sp:[LN:ATMA_ECOLI]

[AC:P39168]

[GN:MGTA:MGT:CORB]

[OR:

ESCHERICHIA COLI

]

[EC:3.6.1.—] [DE:MG(2+)

TRANSPORT ATPASE, P-TYPE

1,] [SP:P39168]

Contig151G

32785_c2_688

3296

7422

183

60

NO-HIT

Contig151G

33180_f3_460

3297

7423

210

60

NO-HIT

Contig151G

33193_c1_546

3298

7424

1020

339

598

3.10E−58

pir:[LN:E71011] [AC:E71011]

[PN:probable phosphoglycerate

dehydrogenase] [GN:PH1387]

[OR:

Pyrococcus horikoshii

]

Contig151G

33212577_c2_783

3299

7425

504

167

147

1.00E−09

gp:[GI:e1364429:g4138732]

[LN:ZMPROPR] [AC:Y17332]

[PN:proline-rich protein]

[GN:PRP] [OR:

Zea mays

]

[DE:

Zea mays

mRNA for proline-

rich protein.]

Contig151G

33334687_c2_698

3300

7426

1107

368

332

5.60E−30

gp:[GI:g2182835]

[LN:LLU81166] [AC:U81166]

[PN:histidine kinase LlkinA]

[GN:llkinA] [OR:

Lactococcus

tactis cremoris

] [DE:

Lactococcus

lactis

subsp.

cremoris

MG1363

histidine kinase (llkinA)gene,

complete cds.]

Contig151G

33360387_c2_833

3301

7427

1017

338

963

6.50E−97

pir:[LN:OWPSAA] [AC:A32013]

[PN:ornithine

carbamoyltransferase,,

anabolic:anabolic citrulline

phosphorylase:anabolic ornithine

transcarbamylase] [CL:ornithine

carbamoyltransferase:aspartate/orn

ithine carbamoyltransferase

homology] [OR:

Pseudomonas

aeruginosa

] [EC:2.1.3.3]

Contig151G

33365652_c1_506

3302

7428

642

213

NO-HIT

Contig151G

33400277_c1_500

3303

7429

435

144

NO-HIT

Contig151G

33401077_c2_719

3304

7430

885

294

367

9.40E−34

sp[LN:YQHC_ECOLI]

[AC:Q46855] [GN:YQHC]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL

TRANSCRIPTIONAL

REGULATOR IN METC-SUF1

INTERGENIC REGION]

[SP:Q46855]

Contig151G

33438178_f3_350

3305

7431

204

67

NO-HIT

Contig151G

33458187_c1_648

3306

7432

234

77

NO-HIT

Contig151G

3367162_f2_192

3307

7433

1428

475

843

3.40E−84

pir:[LN C69997] [AC:C69997]

[PN probable proline transport

protein:probable proline-specific

permease] [GN.ytnA] [CL:arginine

permease] [OR:

Bacillus subtilis

]

Contig151G

33830052_f3_354

3308

7434

819

272

582

1.50E−56

sp:[LN:YAES_ECOLI]

[AC:Q47675:P75668] [GN:YAES]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 18.8 KD

PROTEIN IN FRR-CDSA

INTERGENIC REGION]

[SP:Q47675:P75668]

Contig151G

33838441_f3_332

3309

7435

201

66

NO-HIT

Contig151G

33862526_c3_990

3310

7436

2118

705

673

3.50E−66

pir:[LN:S74707] [AC:S74707]

[PN:nitrogen fixation positive

activator protein:protein

slr1305:protein slr1305] [GN:nifL]

[CL:response regulator homotogy]

[OR:Synechocystis sp.] [SR:PCC

6803, , PCC 6803] [SR:PCC 6803,]

Contig151G

33987830_f1_127

3311

7437

1188

395

292

8.30E−26

gp:[GI:g987090] [LN:SHGCPIR]

[AC:X86780] [GN:orfZ]

[OR:

Streptomyces hygroscopicus

]

[DE:

S.hygroscopicus

gene cluster

for polyketide

immunosuppressantrapamycin.]

Contig151G

34017813_f1_71

3312

7438

1149

382

439

2.20E−41

pir:[LN:B70801] [AC:B70801]

[PN:probable fadE36 protein]

[GN:fadE36] [OR:

Mycobacterium

tuberculosis

]

Contig151G

34173451 _c3_924

3313

7439

906

301

367

9.40E−34

sp:[LN:SM30_MOUSE]

[AC:Q64374:Q60944]

[GN:RGN:SMP30] [OR:

MUS

MUSCULUS

]

[DE:SENESCENCE MARKER

PROTEIN-30 (SMP-30)

(REGUCALCIN) (RC)]

[SP:Q64374:Q60944]

Contig151G

34179753_f3_316

3314

7440

630

209

622

8.90E−61

gp:[GI:g32419751 [LN:SSU85710]

[AC:U85710] [PN:transposase)

[OR:

Sulfotobus solfataricus

]

[DE:

Sulfolobus solfataricus

insertion element 1SC1041,

transposasegene, complete cds.]

Contig151G

34254761_c1_666

3315

7441

480

159

328

1.30E−29

pir:[LN:G70903] [AC:G70903]

[PN:hypothetical protein Rv0163]

[GN:Rv0163] [OR:

Mycobacterium

tuberculosis

]

Contig151G

34381_c2_796

3316

7442

795

264

397

6.20E−37

pir:[LN:C70005] [AC:C70005]

[PN:conserved hypothetical

protein yuaA] [GN:yuaA]

[CL:conserved hypothetical

protein MG323] [OR:

Bacillus

subtilis

]

Contig151G

34553177_f1_51

3317

7443

693

230

NO-HIT

Contig151G

34612765_c1_614

3318

7444

936

311

124

3.70E−11

pir:[LN:D69790] [AC:D69790]

[PN :probable halide peroxidase,

ydjP] [GN:ydjP] [OR:

Bacillus

subtilis

] [EC:1.11.1.—]

Contig151G

34617058_f2_220

3319

7445

690

229

988

1.50E−99

sp:[LN:PCAI_ACICA]

[AC:Q43973:Q43933]

[GN:PCAI:CATI]

[OR:

ACINETOBACTER

CALCOACETICUS

] [EC:2.8.3.6]

[DE:KETOADIPATE:SUCCINYL

COA TRANSFERASE)]

[SP:Q43973:Q43933]

Contig151G

34647183_c2_752

3320

7446

672

223

1043

2.20E−105

pir:[LN:B44570] [AC:B44570]

[PN:3-oxoadipate CoA-transferase,

beta chain] [GN:catJ] [CL:3-

oxoadipate CoA-transferase beta

chain:3-oxoadipate CoA-

transferase beta chain homology]

[OR:

Acinetobacter calcoaccticus

]

[EC:2.8.3.6]

Contig151G

34647183_f2_221

3321

7447

672

223

1043

2.20E−105

pir:[LN:B44570] [AC:B44570]

[PN:3-oxoadipate CoA-transferase,

beta chain] [GN:catJ] [CL:3-

oxoadipate CoA-transferase beta

chain:3-oxoadipate CoA-

transferase beta chain homology]

[OR:

Acinetobacter calcoaceticus

]

[EC:2.8.3.6]

Contig151G

34647311_f1_121

3322

7448

663

220

NO-HIT

Contig151G

34647837_f2_203

3323

7449

378

125

NO-HIT

Contig151G

35328276_f3_425

3324

7450

882

293

NO-HIT

Contig151G

35969132_c2_795

3325

7451

1563

520

1282

1.00E−130

pir:[LN:S77559] [AC:S77559]

[PN:threonine dehydratase,:L-

threonine deaminase:protein

slr2072:L-threonine

deaminase:protein slr2072]

[GN:ilvA] [CL:threonine

dehydratase] [OR:Synechocystis

sp.] [SR:PCC 6803, , PCC 6803]

[SR:PCC 6803,] [EC:4.2.1.16]

Contig151G

36025302_f3_345

3326

7452

1236

411

488

1.40E−46

sp:[LN:MOEA_HAEIN]

[AC:P45210]

[GN:MOEA:CHLE:HI1448]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:MOLYBDOPTERIN

BIOSYNTHESIS MOEA

PROTEIN] [SP:P45210]

Contig151G

36136677_f2_165

3327

7453

2799

932

1173

2.30E−155

sp:[LN:NASA_KLEPN]

[AC:Q06457] [GN:NASA]

[OR:

KLEBSIELLA

PNEUMONIAE

] [EC:1.7.99.4]

[DE:NITRATE REDUCTASE,]

[SP:Q06457]

Contig151G

36198436_f2_145

3328

7454

462

153

290

1.40E−25

gp:[GI:g1100876]

[LN:VCU39068] [AC:U39068]

[OR:

Vibrio cholerae

] [SR:

Vibrio

cholerae

strain=Ogawa 395]

[DE:

Vibrio cholerae

pathogenicity

island, partial and complete cds.]

[NT:hypothetical OrfY]

Contig151G

36213200_f1_15

3329

7455

1047

348

180

4.20E−12

pir:[LN:H69468] [AC:H69468]

[PN:lysophospholipase homolog]

[OR:

Archaeoglobus fulgidus

]

Contig151G

36459700_f2_310

3330

7456

816

271

430

2.00E−40

sp:[LN:MRKB_KLEPN]

[AC:P21646] [GN:MRKB]

[OR:

KLEBSIELLA

PNEUMONIAE

]

[DE:CHAPERONE PROTEIN

MRKB PRECURSOR]

[SP:P21646]

Contig151G

36521880_c3_895

3331

7457

1194

397

122

0.00014

pir:[LN:E69501] [AC:E69501]

[PN:sugar transporter homolog]

[OR:

Archaeoglobus fulgidus]

Contig151G

3930307_c3_987

3332

7458

975

324

504

2.90E−48

sp:[LN:KIPF_ECOLI)

[AC:P23539] [GN:FRUK:FPK]

[OR:

ESCHERICHIA COLI

]

[EC:2.7.1.56] [DE:1-

PHOSPHOFRUCTOKINASE,

(FRUCTOSE 1-PHOSPHATE

KINASE)] [SP:P23539]

Contig151G

3939077_f2_228

3333

7459

1110

369

340

2.90E−46

pir:[LN:A69541] [AC:A69541]

[PN:Glu-tRNA amidotransferase,

subunit A (gatA-2) homolog]

[CL:indoteacetamide hydrolase]

[OR:

Archaeoglobus fulgidus

]

Contig151G

3944151_f3_473

3334

7460

615

204

201

3.70E−16

pir:[LN:D70655] [AC:D70655]

[PN:probable regulatory protein]

[GN:Rv3855] [OR:

Mycobacterium

tuberculosis

]

Contig151G

3947892_c3_1008

3335

7461

534

177

NO-HIT

Contig151G

3954062_c2_841

3336

7462

1449

482

450

1.50E−42

pir:[LN:B69780] [AC:B69780]

[PN:transcription regulator GntR

family homolog ydfD] [GN:ydfD]

[OR:

Bacillus subtilis

]

Contig151G

3991637_c2_864

3337

7463

1200

399

549

4.90E−53

gp:[GI:g2995637] [LN:AF052750]

[AC:AF052750] [PN:alcohol

dehydrogenase] [GN:adhA]

[OR:

Pseudomonas putida

]

[DE:

Pseudomonas putida

plasmid

pPGH1 insertion sequence

IS1383transposase (tnpA), alcohol

dehydrogenase (adhA), and

insertionsequence IS1382

transposase (tnpA) genes, complete

cds.] [NT:putative]

Contig151G

3994012_c2_797

3338

7464

1341

446

943

8.60E−95

pir:[LN:B70007] [AC:B70007]

[PN:Na+-transporting ATP

synthase homolog yubG]

[GN:yubG] [L:Na+-ATP

synthase chain J] [OR:

Bacillus

subtilis

]

Contig151G

4020313_f1_139

3339

7465

543

180

341

5.30E−31

gp:[GI:g4335908] [LN:AF055308]

[AC:AF055308] [PN:F17A

fimbrial subunit precursor

[GN:f17A] [OR:

Escherichia coli

]

[DE:

Escherichia coli

CK377 F17A

fimbrial subunit precursor (f17A)

gene,complete cds.]

Contig151G

4024143_f3_364

3340

7466

1452

483

2385

1.30E−247

sp:[LN:DHGB_ACICA]

[AC:P13650] [GN:GDHB]

[OR:

ACINETOBACTER

CALCOACETICUS]

[EC:1.1.99.17] [DE:(EC

1.1.99.17)] [SP:P13650]

Contig151G

4063441_f3_380

3341

7467

2112

703

768

3.00E−76

pir:[LN:S74450] [AC:S744501

[PN:ferrichrome-iron receptor

2:protein sl11406:protein sl11406

[GN:fhuA_2] [CL:ferrichrome-

iron receptor 1:tonB-dependent

receptor amino-terminal

homology:tonB-dependent

receptor carboxyl-terminal

homology] [OR:Synechocystis sp.]

[SR:PCC 6803, , PCC 6803]

[SR:PCC 6803,]

Contig151G

4063577_c1_566

3342

7468

549

182

209

660E−17

gp:[GI:d1039058:g4512355]

[LN:AB011836] [AC:AB011836]

[OR:

Bacillus halodurans

]

[SR:

Bacillus halodurans

(strain:C-

125, isotate:xylanase producer)

DNA] [DE:

Bacillus halodurans

C-

125 genomic DNA, clone

ALBAC003.] [NT:similar to

B. subtilis

ywgB gene(27%

identity)]

Contig151G

4083437_c2_715

3343

7469

825

274

268

2.90E−23

sp:[LN:YEAM_ECOLI]

[AC:P76241] [GN:YEAM]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL

TRANSCRIPTIONAL

REGULATOR IN GAPA-RND

INTERGENIC REGION]

[SP:P76241]

Contig151G

4086000_f3_326

3344

7470

1518

505

1348

1.00E−137

sp:[LN:SMVA_SALTY]

[AC:P37594] [GN:SMVA)

[OR:

SALMONELLA

TYPHIMURIUM

] [DE:METHYL

VIOLOGEN RESISTANCE

PROTEIN SMVA] [SP:P37594]

Contig151G

4095327_f1_137

3345

7471

1374

457

414

9.80E−39

gp:[GI:e1314854:g3413306]

[LN:SC8B7] [AC:AL031225]

[PN:putative oxidoreductase

[GN:SC8B7.07c]

[OR:

Streptomyces coelicolor]

[DE:

Streptomyces coelicolor

cosmid 8B7.] [NT:SC8B7.07c,

possible oxidoreductase, len: 475;]

Contig151G

4099026_f3_355

3346

7472

1389

462

887

7.40E−89

sp:[LN:YAEL_ECOLI]

[AC:P37764] [GN:YAEL]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 49.1 KD

PROTEIN IN CDSA-HLPA

INTERGENIC REGION]

[SP:P37764]

Contig151G

4101588_f3_442

3347

7473

1062

353

941

1.40E−94

gp:[GI:d1033097:g3401952)

[LN:AB011413] [AC:AB011413]

[PN:Orf8] [FN:alcohol

dehydrogenase] [OR:

Streptomyces

griseus

] [SR:

Streptomyces griseus

DNA] [DE:

Streptomyces griseus

genes for Orf2, Orf3, Orf4, Orf5,

AfsA, Orf8,partial and complete

cds.]

Contig151G

4103461_c3_1036

3348

7474

897

298

318

1.50E−28

gp:[GI:g3660461]

[LN:PSAF001355]

[AC:AF001355:U16026:U03465:

U87170] [PN:DNA binding

protein HpkR] [GN:hpkR]

[OR:

Pseudomonas syringae

pv.

syringae

] [DE:

Pseudomonas

syringae

pv.

syringae

DNA

binding protein HpkR

(hpkR),hybrid histidine protein

kinase-phosphate acceptor

regulatoryprotein CvgSY (cvgSY),

ankyrin AnkF (ankF), and catalase

isozymecatalytic subunit CatF

(catF) genes, complete cds.]

[NT:similarity suggests this is a

member of the HTH]

Contig151G

4103462_c2_724

3349

7475

1581

526

351

2.30E−30

gp:]GI;g3414726] [LN:AF047693]

[AC:AF047693] [PN:multidrug

resistance efflux pump homolog

PmrB] [GN:pmrB]

[OR:

Pseudomonas aeruginosa]

[DE:

Pseudomonas aeruginosa

multidrug resistance efflux pump

homologPmrA (pmrA) and

multidrug resistance efflux pump

homolog PmrB(mmrB) genes,

complete cds.] [NT:14 TMS efflux

pump; similar to EmrB of

Escherichia]

Contig151G

4105312_f3_402

3350

7476

375

124

NO-HIT

Contig151G

4110142_c2_814

3351

7477

558

185

120

1.40E−07

gp:[GI:g4139249] [LN:AF110185]

[AC:AF110185] [PN:unknown]

[OR:

Burkholderia pseudomallei

]

[DE:

Burkholderia pseudomallei

strain 1026b DbhB (dbhB),

generalsecretory pathway protein

D (gspD), general secretory

pathwayprotein E (gspE), general

secretory pathway protein F

(gspF), GspC(gspC), general

secretory pathway protein G

(gspG), generalsecretory pathway

protein H (gspH), general secretory

pathwayprotein I (gsp1), general

secretory pathway protein J

(gspJ),general secretory pathway

protein K (gspK), general

secretorypathway protein L (gspL),

general secretory pathway protein

M(gspM), and general secretory

pathway protein N (gspN)

genes,complete cds; and unknown

genes.] [NT:similar to

Escherichia

coli

MarR protein; orfE]

Contig151G

4118800_f1_63

3352

7478

1104

367

304

4.50E−27

gp:[GI:g2852632] [LN:AF007152]

[AC:AF007152] [PN:unknown]

[OR:

Homo sapiens

] [DE:

Homo

sapiens

clone 23649 and 23755

unknown mRNA, partial cds.]

Contig151G

4140712_c2_739

3353

7479

336

111

114

6.10E−07

sp:[LN:YH83_SYNY3]

[AC:P73602] [GN:SLL1783]

[OR:SYNECHOCYSTIS SP]

[SR:PCC 6803,]

[DE:HYPOTHETICAL 16.8 KD

PROTEIN SLL1783] [SP:P73602]

Contig151G

4142840_f2_257

3354

7480

528

175

NO-HIT

Contig151G

4147318_c2_733

3355

7481

1350

449

923

1.10E−92

sp:[LN:TUB3_AGRVI]

[AC:P70786] [GN:TTUB]

[OR:

AGROBACTERIUM VITIS

]

[DE:PUTATIVE TARTRATE

TRANSPORTER] [SP:P70786]

Contig151G

4156377_c2_174

3356

7482

891

296

877

8.50E−88

pir:[LN:E69778] [AC:E69778]

[PN:conserved hypothetical

protein ydeK] [GN:ydeK]

[OR:

Bacillus subtilis

]

Contig151G

42087_f1_88

3357

7483

858

285

1169

970E−119

pir:[LN:JC4161]

[AC:JC4161:PC4038]

[PN:probable chloride

peroxidase,:esterase

(misidentification)]

[CL:peroxidase]

[OR:

Pseudomonas putida

]

[EC:1.11.1.10]

Contig151G

4335950_f2_156

3358

7484

1155

384

138

5.40E−07

pir:[LN:E70470] [AC:E70470]

[PN:conserved hypothetical

protein aq_1986] [GN:aq_1986]

[OR:

Aquifex aeolicus

]

Contig151G

4339132_c1_621

3359

7485

639

212

133

1.50E−07

pir:[LN:H65092] [AC:H65092]

[PN:hypothetical protein b3050]

[OR:

Escherichia coli

]

Contig151G

4344568_c1_568

3360

7486

816

271

337

1.40E−30

pir:[LN:S69588] [AC:S69588]

[PN:hypothetical protein

YDR533c] [CL:conserved

hypothetical protein YMR322c]

[OR:

Saccharomyces cerevisiae

]

[MP:4R]

Contig151G

4375258_c3_994

3361

7487

1464

487

1670

7.90E−172

gp:[GI:e321556:g2208982]

[LN:YEY13308] [AC:Y13308]

[PN:sulfate permease]

[OR:

Yersinia enterocolitica

]

[DE:

Yersinia enterocolitica

plasmid DNA fragment, strain

15673.] [NT:ORF3]

Contig151G

439452_f1_57

3362

7488

792

263

NO-HIT

Contig151G

4398376_f1_335

3363

7489

513

170

NO-HIT

Contig151G

4429088_f2_268

3364

7490

468

155

NO-HIT

Contig151G

4429642_f3_419

3365

7491

1269

422

601

1.50E−58

gp:[GI:g2291144]

[LN:CELF17A9] [AC:AF016417]

[GN:F17A9.4]

[OR:

Caenorhabditis elegans

]

[SR:

Caenorhabditis elegans

strain=Bristol N2]

[DE:

Caenorhabditis elegans

cosmid F17A9.] [NT:similar to

NADH oxidases]

Contig151G

4471093_f1_59

3366

7492

2286

761

2332

5.60E−242

sp:[LN:CLPA_ECOLI]

[AC:P15716:P77686]

[GN:CLPA:LOPD]

[OR:

ESCHERICHIA COLI

]

[DE:ATP-DEPENDENT CLP

PROTEASE ATP-BINDING

SUBUNIT CLPA]

[SP:P15716:P77686]

Contig151G

4492137_c2_735

3367

7493

198

65

NO-HIT

Contig151G

4538937_c1_560

3368

7494

846

281

115

0.00039

gp:[GI:g1236921]

[LN:SDU49822] [AC:U49822]

[PN:Var1p] [GN:var1]

[FN:mitochondrial ribosomal

protein] [OR:

Mitochondrion

Saccharomyces douglasii

]

[SR:baker's yeast

[DE:

Saccharomyces douglasii

mitochondrial tRNA-Ser and

tRNA-Phe genes,partial sequence.

and Var1p (var1) gene,

mitochondrial geneencoding

mitochondrial protein, complete

cds.]

Contig151G

4566057_c3_953

3369

7495

183

60

NO-HIT

Contig151G

4687625_f1_22

3370

7496

186

61

NO-HIT

Contig151G

4687763_c1_630

3371

7497

912

303

349

7.60E−32

sp:[LN:LTRA_KLEPN]

[AC:P52689] [GN:LTRA]

[OR:

KLEBSIELLA

PNEUMONIAE

]

[DE:PROBABLE

TRANSCRIPTIONAL

REGULATOR LTRA]

[SP:P52689]

Contig151G

4688751_f1_39

3372

7498

2598

865

808

2.00E−117

gp:[GI:g2231186] [LN:HIU60831]

[AC:U60831] [PN:D15] [GN:d15]

[OR:

Haemophilus influenzae

]

[DE:

Haemophilus influenzae

CDP

diglyceride synthetase (cds) and

D15(d15) genes. complete cds, and

(skp) gene, partial cds.]

Contig151G

4688800_c2_738

3373

7499

666

221

298

1.90E−26

sp:[LN:YCAC_ECOLI]

[AC:P21367] [GN:YCAC]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 23.1 KD

PROTEIN IN DMSC-PFLA

INTERGENIC REGION]

[SP:P21367]

Contig151G

4689700_f2_261

3374

7500

774

257

116

1.10E−06

pir:[LN:F64973] [AC:F64973]

[PN:hypothetical protein b2071]

[OR:

Escherichia coli

]

Contig151G

4692250_f3_391

3375

7501

654

217

938

2.90E−94

gp;[GI;g141783]

[LN:ACCPCAOP]

[AC:L05770:U04359:M33798:U2

0284:U11554:L13114:L03407]

[PN:protocatechuate 3,4-

dioxygenase alpha subunit]

[GN:pcaG] [OR:Acinetobacter sp.

ADP1 ] [EC:1.99.2.3]

[DE:Acinetobacter sp. ADP1 pca-

qui-pob supraoperonic cluster,

completesequence.] [NT:PO]

Contig151G

4695262_f1_40

3376

7502

1080

359

637

2.30E−62

sp:[LN:LPXD_HAEIN]

[AC:P43888] [GN:LPXD:HI0915]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:2.3.1.—]

[DE:(EC 2.3.1.—)] [SP:P43888]

Contig151G

4697125_f1_60

3377

7503

366

121

326

2.10E−29

sp:[LN:YNFA_ECOLI]

[AC:P76169] [GN:YNFA]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 11.9 KD

PROTEIN IN RSPA-SPEG

INTERGENIC REGION]

[SP:P76169]

Contig151G

4703425_c2_749

3378

7504

1770

589

904

1.20E−90

pir:[LN:C64459] [AC:C64459]

[PN:dihydroxy-acid dehydratase,]

[CL:dihydroxy-acid dehydratase]

[OR:

Methanococcus jannaschii

]

[EC:4.2.1.9] [MP:REV1222335-

1220650]

Contig151G

4705338_f1_66

3379

7505

1368

455

1869

6.40E−193

gp:[GI:g141778]

[LN:ACCPCAOP]

[AC:L05770:U04359:M33798:U2

0284:U11554:L13114:L03407]

[PN:beta-carboxy-cis,cis-muconate

cycloisomerase] [GN:pcaB]

[FN:lactonizing enzyme]

[OR:Acinetobacter sp. ADP1]

[EC:5.5.1.2] [DE:Acinetobacter sp.

ADP1 pca-qui-pob supraoperonic

cluster, completesequence.]

[NT:CMLE]

Contig151G

4709467_f3_424

3380

7506

471

156

NO-HIT

Contig151G

4711003_f3_459

3381

7507

192

63

NO-HIT

Contig151G

4722883_f2_176

3382

7508

207

68

NO-HIT

Contig151G

4725052_f2_312

3383

7509

1047

348

NO-HIT

Contig151G

4725338_f1_10

3384

7510

1404

467

1039

5.80E−105

pir:[LN:F70938] [AC:F70938]

[PN:probablc fabG4 protein]

[GN:fabG4] [OR:

Mycobacterium

tuberculosis

]

Contig151G

4725657_f3_384

3385

7511

765

254

NO-HIT

Contig151G

4736275_c1_551

3386

7512

1350

449

397

6.20E−37

gp:[GI:g1657608] [LN:SPU66846]

[AC:U66846] [OR:

Streptococcus

pneumoniae

] [DE:

Streptococcus

pneumoniae

cps3E and rpt

pseudogenes, partialsequence,

Cps3C (cps3C), Cps3P (cps3P)

genes, partial cds.] [NT:orf5]

Contig151G

4782632_c1_651

3387

7513

339

112

NO-HIT

Contig151G

48265_f3_448

3388

7514

1422

473

135

1.30E−05

sp:[LN:YD2A_SCHPO]

[AC:Q10258] [GN:SPAC56F8.10]

[OR:

SCHIZOSACCHAROMYCE

S POMBE

] [SR:,FISSION

YEAST] [DE:HYPOTHETICAL

69.0 KD PROTEIN C56F8.10 IN

CHROMOSOME 1] [SP:Q10258]

Contig151G

4863576_f3_393

3389

7515

2481

826

3836

0

pir:[LN:A55547] [AC:A55547]

[PN:quinate-shikimate

dehydrogenase,] [GN:quiA]

[OR:

Acinetobacter calcoaceticus

]

[EC:1.1.99.—]

Contig151G

4869037_f2_248

3390

7516

1002

333

847

1.30E−84

gp:[GI:g1916310]

[LN:ATU91632] [AC:U91632]

[GN:gguC] [OR:

Agrobacterium

tumefaciens

] [DE:

Agrobacterium

tumefaciens

sugar transporter

(gguA),membrane-spanning

permease (gguB), and (gguC)

genes, complete cds.]

Contig151G

4881443_f3_317

3391

7517

435

144

178

1.00E−13

sp:[LN:YCGK_ECOLI]

[AC:P76002] [GN:YCGK]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 14.9 KD

PROTEIN IN MINC-SHEA

INTERGENIC REGION

PRECURSOR] [SP:P76002]

Contig151G

4882713_c3_898

3392

7518

450

149

142

1.10E−08

pir:[LN:G64616] [AC:G64616]

[PN:penta-phosphate guanosine-3′-

pyrophosphohydrolase]

[CL:guanosine 3′,5′-

bis(diphosphate) 3′-

pyrophosphatase]

[OR:

Helicobacter pylori

]

Contig151G

4883452_f3_413

3393

7519

795

264

131

5.40E−07

gp:[GI:g945392]

[LN:MTFMAUF] [AC:L37428]

[OR:Methylobacillus sp.]

[SR:

Methylobacillus flagellatum

(strain KT) DNA]

[DE:

Methylobacillus flagellatum

orf-1 gene, complete cds and mauF

gene,5′ end of cds.] [NT:orf-1;

putative]

Contig151G

4884708_f2_190

3394

7520

297

98

NO-HIT

Contig151G

4885012_c3_997

3395

7521

459

152

230

3.10E−19

sp:[LN:AZLB_BACSU]

[AC:007920] [GN:AZLB].

[OR:BACILLUS SUBTILIS]

[DE:TRANSCRIPTIONAL

REGULATOR AZLB]

[SP:O07920]

Contig151G

4886018_f1_89

3396

7522

702

233

326

2.10E−29

pir:[LN:S69588] [AC:S69588]

[PN :hypothetical protein

YDR533c] [CL:conserved

hypothetical protein YMR322C]

[OR:

Saccharomyces cerevisiae

]

[MP:4R]

Contig151G

4886526_c1_535

3397

7523

1104

367

436

4.60E−41

gp:[GI:g3414725] [LN:AF047693]

[AC:AF047693] [PN:multidrug

resistance efflux pump homolog

PmrA] [GN:pmrA]

[OR:

Pseudomonas aeruginosa

]

[DE:

Pseudomonas aeruginosa

multidrug resistance efflux pump

homologPmrA (pmrA) and

multidrug resistance efflux pump

homolog PmrB(pmrB) genes,

complete cds.] [NT:membrane

fusion protein; similar to EmrA of]

Contig151G

4892343_c1_660

3398

7524

1341

446

703

2.30E−69

gp:[GI:g862633] [LN:XXU13633]

[AC:U13633] [PN:RumB(R391)]

[GN:rumB(R391)] [OR:IncJ

plasmid R391] [DE:IncJ plasmid

R391 rumA(R391) and

rumB(R391) genes, complete cds.]

[NT:similar to

Escherichia coli

UmuC, Swiss-Prot]

Contig151G

4898253_f2_186

3399

7525

213

70

NO-HIT

Contig151G

4901552_f2_225

3400

7526

885

294

174

4.60E−21

gp:[GI:e1344248:g3874677]

[LN:CEC33A12] [AC:Z68493]

[GN:C33A12.7]

[OR:

Caenorhabditis elegans

]

[DE:

Caenorhabditis elegans

cosmid C33A12, complete

sequence.] [NT:cDNA EST

yk301h4.5 comes from this gene;

cDNA EST]

Contig151G

5082665_f3_394

3401

7527

495

164

NO-HIT

Contig151G

5085902_c1_637

3402

7528

465

154

340

6.80E−31

sp:[LN:YRFH_HAEIN]

[AC:P44754] [GN:HI0562]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

HI0562] [SP:P44754]

Contig151G

5095328_c1_632

3403

7529

1728

575

1382

2.60E−141

sp:[LN:PTFB_ECOLI]

[AC:P20966] [GN:FRUA:PTSF]

[OR:

ESCHERICHIA COLI

]

[EC:2.7.1.69] [DE:(EC 2.7.1.69)

(EII-FRU)] [SP:P20966]

Contig151G

5109642_f3_453

3404

7530

828

275

192

3.30E−15

pir:[LN:S76242] [AC:S76242]

[PN:hypothetical protein]

[OR:Synechocystis sp.] [SR:PCC

6803, , PCC 6803] [SR:PCC 6803,]

Contig151G

5117078_f2_169

3405

7531

1041

346

580

2.50E−56

sp:[LN:NARA_BACSU]

[AC:P39757]

[GN:NARA:NARAB]

[OR:

BACILLUS SUBTILIS

]

[DE:NARA PROTEIN]

[SP:P39757]

Contig151G

5290687_f1_52

3406

7532

1167

388

489

1.10E−46

gp:[GI:g4104238] [LN:AF034414]

[AC:AF034414] [PN:outer

membrane phospholipase A

precursor] [GN:pldA]

[OR:

Enterobacter agglomerans

]

[EC:3.1.1.32] [DE:

Enterobacter

agglomerans

outer membrane

phospholipase A precursor(pldA)

gene, complete cds.] [NT:detergent

resistent phospholipase A; PldA:

OMPLA]

Contig151G

5290885_f3_360

3407

7533

1194

397

911

2.10E−91

sp:[LN:AQL1_THEAQ]

[AC:P08594] [GN:PSTI]

[OR:

THERMUS AQUATICUS

]

[EC:3.4.21.—] [DE:AQUALYSIN I

PRECURSOR,] [SP:P08594]

Contig151G

5351577_f2_238

3408

7534

2325

774

2586

6.80E−269

sp:[LN:AMO_ECOLI]

[AC:P46883:P78153:O53008]

[GN:TYNA:MAOA]

[OR:

ESCHERICHIA COLI

]

[EC:1.4.3.6] [DE:(2-

PHENYLENTHYLAMINE

OXIDASE)]

[SP:P46883:P78153:O53008]

Contig151G

54807_f1_9

3409

7535

219

72

NO-HIT

Contig151G

563527_c3_942

3410

7536

2517

838

1537

9.80E−158

gp:[GI:g2435408]

[LN:AFU93881] [AC:U93881]

[PN:penicillin G acylase precursor]

[GN:pac] [OR:

Alcaligenes

faecalis

] [EC:3.5.1.11]

[DE:

Alcaligenes faecalis

penicillin

G acylase precursor (pac)

gene,complete cds.]

Contig151G

572062_c1_678

3411

7537

723

240

573

1.40E−55

sp:[LN:YCAR_PSEAE]

[AC:P38102]

[OR:

PSEUDOMONAS

AERUGINOSA

]

[DE:HYPOTHETICAL 23.3 KD

PROTEIN IN CARA-CARB

INTERGENIC REGION]

[SP:P38102]

Contig151G

578431_c2_811

3412

7538

879

292

120

7.10E−05

pir:[LN:E65030] [AC:E65030]

[PN:hypothetical protein b2534]

[OR:

Escherichia coli

]

Contig151G

579163_c1_483

3413

7539

234

77

NO-HIT

Contig151G

585092_c1_494

3414

7540

858

285

466

3.00E−44

gp:[GI:e1311682:g3334832]

[LN:SAR7932] [AC:AJ007932]

[PN:cyclase] [GN:mtmY]

[OR:

Streptomyces argillaceus

]

[DE:

Streptomyces argillaceus

mithramycin biosynthetic genes.]

Contig151G

5860637_f1_48

3415

7541

420

139

NO-HIT

Contig151G

6064700_f2_213

3416

7542

684

227

6.49

1.20E−63

sp:[LN:RPIA_ECOLI]

[AC:P27252] [GN:RPIA]

[OR:

ESCHERICHIA COLI

]

[EC:5.3.1.6] [DE:RIBOSE 5-

PHOSPHATE ISOMERASE A,

(PHOSPHORIBOISOMERASE

A)] [SP:P27252]

Contig151G

6095953_f3_420

3417

7543

1080

359

165

3.50E−11

pir:[LN:F70669]

[AC:F70669:S73068:S73067]

[PN:hypothetical protein

Rv2953:hypothetical protein

u0002m:hypothetical protein

u0002n) [GN:Rv2953]

[OR:

Mycobacterium tuberculosis

]

Contig151G

6281883_c1_594

3418

7544

837

278

1160

8.70E−118

gp:[GI:g3264839]

[LN:ACCPCAOP]

[AC:L05770:U04359:M33798:U2

0284:U11554:L13114.L03407]

[PN:regulatory protein PcaU]

[GN:pcaU] [FN:activation of the

expression of the pca operon]

[OR:Acinetobacter sp. ADP1]

[DE:Acinetobacter sp. ADP1 pca-

qui-pob supraoperonic cluster,

completesequence.]

Contig151G

6304561_c3_896

3419

7545

930

309

NO-HIT

Contig151G

6446925_c1_572

3420

7546

816

271

886

9.50E−89

gp:[GI:g2996620] [LN:AF009224]

[AC:AF009224:M76991:M76990:

M23245:M29848:M29714:M6264

9] [PN:beta-ketoadipate enol-

lactone hydrolase] [GN:catD]

[FN:hydrolysis of beta-ketoadipate

enol-lactone] [OR:Acinetobacter

sp.ADP1] [DE:Acinetobacter sp.

ADP1 ben operon and cat operon,

completesequence.]

Contig151G

6454713_c2_683

3421

7547

1884

627

NO-HIT

Contig151G

6526917_c3_999

3422

7548

705

234

326

2.10E−29

sp:[LN:YRFG_ECOLI]

[AC:P45801] [GN:YRFG]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 25.4 KD

PROTEIN IN MRCA-PCKA

INTERGENIC REGION]

[SP:P45801]

Contig151G

664658_c2_692

3423

7549

1377

458

562

2.00E−54

gp:[GI:d1032429:g3298360]

[LN:AB010716] [AC:AB010716]

[PN:Tyramine oxidase] [GN:tyo]

[OR:

Micrococcus luteus

]

[SR:

Micrococcus luteus

DNA]

[EC:1.4.3.9] [DE:

Micrococcus

luteus

tyo gene for Tyramine

oxidase, complete cds.]

Contig151G

667160

‘3

f2_313

3424

7550

207

68

NO-HIT

Contig151G

6673387_c2_840

3425

7551

336

111

207

8.50E−17

sp:[LN:YCCK_HAEIN]

[AC:P45184] [GN:HI1371]

[OR:

HAEMOPHILUS

INFLUENZAE]

[DE:HYPOTHETICAL PROTEIN

HI1371] [SP:P45184]

Contig151G

6680438_c1_502

3426

7552

828

275

NO-HIT

Contig151G

673187_f2_285

3427

7553

885

294

199

6.00E−16

sp:[LN:Y902_HAEIN]

[AC:P44070] [GN:HI0902]

[OR:

HAEMOPHILUS

INFLUENZAE]

[DE:HYPOTHETICAL PROTEIN

HI0902] [SP:P44070]

Contig151G

6741505_c1_624

3428

7554

198

65

106

4.30E−06

sp:[LN:YBGT_ECOLI]

[AC:P56100] [GN:YBGT]

[OR:

ESCHERICHIA COLI

]

[DE:4.0 KD PROTEIN IN CYDB-

TOLQ INTERGENIC REGION

(ORFC)] [SP:P56100]

Contig151G

679002_f2_259

3429

7555

543

180

NO-HIT

Contig151G

680465_c3_978

3430

7556

1161

386

1348

1.00E−137

pir:[LN:B38170] [AC:B38170]

[PN:cytochrome d complex

terminal oxidase, chain II]

[CL:cytochrome d ubiquinol

oxidase] [OR:

Azotobacter

vinclandii

] [EC:1.10.3.—]

Contig151G

6817627_c3_874

3431

7557

189

62

NO-HIT

Contig151G

6831412_f3_463

3432

7558

1170

389

403

1.40E−37

pir:[LN:B69799] [AC:B69799]

[PN:salicylate 1-monooxygenase

homolog yetM] [GN:yetM]

[OR:

Bacillus subtilis

]

Contig151G

6835342_c3_941

3433

7559

1230

409

1770

200E−182

gp:[GI:g141777]

[LN:ACCPCAOP]

[AC:L05770:U04359:M33798:U2

0284:U11554:L13114:L03407]

[PN:beta-ketoadipyl CoA thiolase]

[GN:pcaF] [OR:Acinetobacter sp.

ADP1] [EC:3.1.2.000]

[DE:Acinetobacter sp. ADP1 pca-

qui-pob supraoperonic cluster,

completesequence.]

Contig151G

6914137_f1_87

3434

7560

1671

556

1311

8.70E−134

pir:[LN:S27612) [AC:S27612)

[PN:ketoglutaratc semialdehyde

dehydrogenase,]

[OR:

Pseudomonas putida

]

[EC:1.2.1.—]

Contig151G

6914837_f3_351

3435

7561

498

165

455

4.40E−43

sp:[LN:YACN_BACSU]

[AC:Q06756] [GN:YACN]

[OR:

BACILLUS SUBTILIS

]

[DE:HYPOTHETICAL 17.1 KD

PROTEIN IN MECB-GLTX

INTERGENIC REGION]

[SP:Q06756]

Contig151G

7110905_c2_858

3436

7562

1425

474

1537

9.80E−158

sp:[LN:ACCC_PSEAE]

[AC:P37798] [GN:ACCC:FABG]

[OR:PSEUDOMONAS

AERUGINOSA]

[EC:6.3.4.14:6.4.1.2]

[DE:CARBOXYLASE,) (ACC)]

[SP:P37798]

Contig151G

7234642_c2_820

3437

7563

1068

355

1611

1.40E−165

sp:[LN:RECA_ACICA)

[AC:P42438] [GN:RECA]

[OR:

ACINETOBACTER

CALCOACETICUS

] [DE:RECA

PROTEIN] [SP:P42438]

Contig151G

791331_c1_647

3438

7564

672

223

132

1.80E−07

pir:[LN:F70622] [AC:F70622)

[PN:probable transcription

regulator Rv1019] [GN:Rv1019]

[OR:

Mycobacterium tuberculosis

]

Contig151G

814812_f3_412

3439

7565

927

308

1127

2.70E−114

gp:[GI:g2996614] [LN:AF009224]

[AC:AF009224:M76991:M76990:

M23245:M29848:M29714:M6264

9] [PN:transcriptional activator

protein] [GN:catM] [FN:activator

of cat-gene expression]

[OR:Acinetobacter sp. ADP1]

[DE:Acinetobacter sp. ADP1 ben

operon and cat operon,

completesequence.]

Contig151G

834837_f3_349

3440

7566

1332

443

520

5.80E−50

sp:[LN:DADA_ECOLI]

[AC:P29011] [GN:DADA:DADR]

[OR:

ESCHERICHIA COLI

]

[EC:1.4.99.1] [DE:D-AMINO

ACID DEHYDROGENASE

SMALL SUBUNIT,] [SP:P29011]

Contig151G

8562_c3_922

3441

7567

1332

443

1045

1.30E−105

sp:[LN:TUB3_AGRVI]

[AC:P70786] [GN:TTUB]

[OR:

AGROBACTERIUM VITIS

]

[DE:PUTATIVE TARTRATE

TRANSPORTER] [SP:P70786]

Contig151G

89128_f3_339

3442

7568

183

60

NO-HIT

Contig151G

892150_f2_269

3443

7569

741

246

178

2.70E−18

sp:[LN:YCSO_BACSU]

[AC:P42968] [GN:YCSO]

[OR:

BACILLUS SUBTILIS

]

[DE:HYPOTHETICAL

TRANSCRIPTIONAL

REGULATOR IN SIPU-PBPC

INTERGENIC REGION]

[SP:P42968]

Contig151G

960077_f2_217

3444

7570

858

285

1094

8.60E−111

gp:[GI:g4235471] [LN:AF098791]

[AC:AF098791] [PN:2-dehydro-3-

deoxyphosphooctonate aldolase]

[GN:kdsA] [OR:

Pseudomonas

aeruginosa

] [DE:

Pseudomonas

aeruginosa

2-dehydro-3-

deoxyphosphooctonate

aldolase(kdsA) gene, complete

cds.]

Contig151G

973787_f1_115

3445

7571

1002

333

144

2.00E−12

sp:[LN:KPRS_MYCPN]

[AC:P75044] [GN:PRSA:PRS]

[OR:

MYCOPLASMA

PNEUMONIAE

] [EC:2.7.6.1]

[DE:PYROPHOSPHATE

SYNTHETASE)] [SP:P75044]

Contig151G

974077_c2_854

3446

7572

1011

336

369

2.90E−33

sp:[LN:NRTC_SYNY3]

[AC:P73450]

[GN:NRTC:SLL1452]

[OR:SYNECHOCYSTIS SP]

[SR:PCC 6803,] [DE:NITRATE

TRANSPORT ATP-BINDING

PROTEIN NRTC] [SP:P73450]

Contig151G

975702_f2_314

3447

7573

1164

387

500

7.60E−48

sp:[LN:Y4IL_RHISN]

[AC:P55495] [GN:Y4IL]

[OR:RHIZOBIUM SP]

[DE:HYPOTHETICAL 47.8 KD

PROTEIN Y4IL] [SP:P55495]

Contig151G

975901_c2_751

3448

7574

771

256

975

3.50E−98

sp [LN PCAI_ACICA]

[AC:Q43973:Q43933]

[GN:PCAI:CATI]

[OR:

ACINETOBACTER

CALCOACETICUS

] [EC:2.8.3.6]

[DE:KETOADIPATE:SUCCINYL

COA TRANSFERASE)]

[SP:Q43973:Q43933]

Contig151G

9845302_f1_47

3449

7575

528

175

NO-HIT

Contig151G

9899077_f3_371

3450

7576

795

264

798

2.00E−79

sp:[LN:AMPM_ECOLI]

[AC:P07906] [GN:MAP]

[OR:

ESCHERICHIA COLI

]

[EC:3.4.11.18]

[DE:METHIONINE

AMINOPEPTIDASE, (MAP)

(PEPTIDASE M)] [SP:P07906]

Contig151G

9923502_f2_230

3451

7577

558

185

NO-HIT

Contig151G

9945301_c3_986

3452

7578

288

95

NO-HIT

Contig151G

9953308_c1_565

3453

7579

1077

358

678

1.00E−66

gp:[GI:e1420007:g45391801

[LN:SC6A5] [AC:AL049485]

[PN:hypothetical protein]

[GN:SC6A5.25]

[OR:

Streptomyces coelicolor

]

[DE:

Streptomyces coelicolor

cosmid 6A5.] [NT:SC6A5.25,

unknown, len: 37; similar to]

Contig152G

10437890_c2_664

3454

7580

714

237

585

7.40E−57

sp:[LN:MODB_HAEIN]

[AC:P45322]

[GN:MODB.HI1692]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:MOLYBDENUM

TRANSPORT SYSTEM

PERMEASE PROTEIN MODB]

[SP:P45322]

Contig152G

10629077_f1_9

3455

7581

1416

471

2338

1.30E−242

gp:[GI:g3511232] [LN:AF071556]

[AC:AF071556] [PN:anthranilate

dioxygenase large subunit]

[GN:antA] [OR:Acinetobacter sp.

ADP1] [DE:Acinetobactcr sp.

ADP1 anthranilate dioxygenase

large subunit(antA), anthranilate

dioxygenase small subunit (antB),

andanthranilate dioxygenase

reductase (antC) genes, complete

cds.] [NT:terminal dioxygenase]

Contig152G

10743755_c3_710

3456

7582

594

197

NO-HIT

Contig152G

10975305_c1_450

3457

7583

510

169

393

1.70E−36

sp:[LN:YFHC_ECOLI]

[AC:P30134] [GN:YFHC]

[OR:ESCHERICIA COLI]

[DE:HYPOTHETICAL 20.0 KD

PROTEIN IN PURL-DPJ

INTERGENIC REGION

(ORF178)] [SP:P30134]

Contig152G

11875461_c3_756

3458

7584

384

127

NO-HIT

Contig152G

1204677_c1_554

3459

7585

345

114

NO-HIT

Contig152G

1204762_c1_457

3460

7586

1149

382

869

6.00E−87

sp:[LN:YHCM_ECOLI]

[AC:P46442] [GN:YHCM]

OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 43.1 KD

PROTEIN IN RPLM-HHOA

INTERGENIC REGION (F375)]

[SP:P46442]

Contig152G

1208438_c1_519

3461

7587

1131

376

369

5.80E−34

sp:[LN:RND_HAEIN]

[AC:P44442] [GN:RND:HI0390]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:3.1.26.3]

[DE:RIBONUCLEASE D,

(RNASE D)] [SP:P44442]

Contig152G

12533327_c3_704

3462

7588

2250

749

129

1.60E−06

pir:[LN:B69844] [AC:B69844]

[PN:lytic transglycosylase

homolog yjbJ] [GN:yjbJ]

[OR:

Bacillus subtilis

]

Contig152G

12579693_f1_98

3463

7589

1494

497

129

4.90E−11

sp:[LN:UVRD_MYCGE]

[AC:P47486]

[GN:UVRD:MG244]

[OR:

MYCOPLASMA

GENITALIUM

] [EC:3.6.2.—]

[DE:PUTATIVE DNA

HELICASE II HOMOLOG,]

[SP:P47486]

Contig152G

1260_f1_20

3464

7590

1371

456

300

1.80E−44

sp:[LN:CHRA_PSEAE]

[AC:P14285] [GN:CHRA]

[OR:

PSEUDOMONAS

AERUGINOSA

]

[DE:CHROMATE TRANSPORT

PROTEIN] [SP:P14285]

Contig152G

12761078_c1_520

3465

7591

1005

334

539

4.60E−76

sp:[LN:YFCB_ECOLI]

[AC:P39199:P78252:P76939]

[GN:YFCB] [OR:

ESCHERICHIA

COLI

] [EC:2.1.1.72] [DE:(EC

2.1.2.72)]

[SP:P39199:P78252:P76939]

Contig152G

13086578_c3_749

3466

7592

1770

589

1247

5.30E−127

sp:[LN:YBHF_ECOLI]

[AC:P75776] [GN:YBHF]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL ABC

TRANSPORTER ATP-BINDING

PROTEIN YBHF] [SP:P75776]

Contig152G

134652_c2_644

3467

7593

249

82

139

1.40E−09

gp:[GI:e221397:g1183904]

[LN:DVAPSAB] [AC:Z69372]

[PN:adenylylsulphate reductase

beta-subunit] [GN:apsB]

[FN:reduction of aps to amp and

sulfite] [OR:

Desulfovibrio

vulgaris

] [EC:1.8.99.2]

[DE:

D.vulgaris

apsA and apsB

genes.]

Contig152G

1359625_c1_532

3468

7594

198

65

NO-HIT

Contig152G

13730438_c1_474

3469

7595

414

137

NO-HIT

Contig152G

1377186_c1_518

3470

7596

255

84

NO-HIT

Contig152G

13798437_f3_328

3471

7597

234

77

NO-HIT

Contig152G

13914182_c3_679

3472

7598

414

137

229

3.90E−19

gp:[GI:g9727791 [LN:PSEPILZ]

[AC:L42622] [GN:pilZ]

[OR:

Pseudomonas aeruginosa

]

[SR:

Pseudomonas aeruginosa

(strain PAO1) DNA]

[DE:

Pseudomonas aeruginosa

pilZ

and holB genes, complete cds.]

[NT:involved in biogenesis of type

4 fimbriae]

Contig152G

13947952_f1_100

3473

7599

294

97

NO-HIT

Contig152G

14094068_c3_718

3474

7600

951

316

266

6.70E−47

gp:[GI:g4154809] [LN:AE001465]

[AC:AE001465:AE001439]

[PN:DIPEPTIDE TRANSPORT

SYSTEM PERMEASE PROTEIN]

[GN:dppB] [OR:

Helicobacter

pylori J99] [DE:

Helicobacter

pylori

, strain J99 section 26 of 132

of the completegenome.]

[NT:similar to

H. pylori

26695

gene HP0299]

Contig152G

1443807_c3_792

3475

7601

420

139

145

3.10E−10

sp:[LN:FUR_YERPE]

[AC:P33086] [GN:FUR]

[OR:

YERSINIA PESTIS

]

[DE:FERRIC UPTAKE

REGULATION PROTEIN

(FERRIC UPTAKE

REGULATOR)] [SP:P33086]

Contig152G

14468750_f3_417

3476

7602

702

233

NO-HIT

Contig152G

14584812_c2_595

3477

7603

2190

729

2385

1.30E−247

gp:[GI:e308976:g1906369]

[LN:PFFC2] [AC:Y11998]

[PN:hypothetical protein]

[GN:FC2.4] [OR:

Pseudomonas

fluorescens

] [DE:

P.fluorescens

FC2.1, FC2.2, FC2.3c, FC2.4 and

FC2.5c open readingframes.]

[NT:most probably a malate

synthase cds: insertion of a]

Contig152G

1460875_c3_672

3478

7604

1038

345

834

3.10E−83

gp:[GI:g3241975] [LN:SSU85710]

[AC:U85710] [PN:transposase]

[OR:

Sulfolobus solfataricus]

[DE:

Sulfolobus solfataricus

insertion etement ISC1041,

transposasegene, complete cds.]

Contig152G

14634642_c2_646

3479

7605

285

94

84

0.00092

pir:[LN:S29304]

[AC:S29304:S28376]

[PN:hypothetical protein 2 (phaC1

5′ region)] [OR:

Pseudomonas

aeruginosa]

Contig152G

14662557_f3_382

3480

7606

1050

349

236

4.00E−17

gp:[GI:g2529416] [LN:55U73935]

[AC:U73935] [PN:unknown]

[OR:Shewanella sp SCRC-2738]

[DE:Shewanella sp. SCRC-2738

eicosapentaenoic acid (EPA)

synthesis genecluster, complete

sequence.] [NT:ORF3]

Contig152G

14875757_c3_734

3481

7607

471

156

454

5.70E−43

sp:[LN:YBAK_ECOLI]

[AC:P37175:P77281] [GN:YBAK]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 17.1 KD

PROTEIN IN USHA-TESA

INTERGENIC REGION]

[SP:P37175:P77281]

Contig152G

14877125_c2_671

3482

7608

1161

386

1940

1.90E−200

sp:[LN:PQQE_ACICA]

[AC:P07782:Q43987]

[GN:PQQE:PQQIII]

[OR:

ACINETOBACTER

CALCOACETICUS

]

[DE:COENZYME PQQ

SYNTHESIS PROTEIN E

(COENZYME PQQ SYNTHESIS

PROTEIN III)]

[SP:P07782:Q43987]

Contig152G

14884692_c2_585

3483

7609

276

91

NO-HIT

Contig152G

14886505_c2_569

3484

7610

729

242

656

2.20E−64

sp:[LN:UNG_HAEIN]

[AC:P43731] [GN:UNG:HI0018]

[OR:

HAEMOPHILUS

INFLUENZAE] [EC:3.2.2.—]

[DE:URACIL-DNA

GLYCOSYLASE, (UDG)]

[SP:P43731]

Contig152G

14978432_c3_685

3485

7611

963

320

325

2.70E−29

sp:[LN:YF72_HAEIN]

[AC:P46495] [GN:HI1572]

[OR:

HAEMOPHILUS

INFLUENZAE

] [DE:PUTATIVE

INTEGRASE/RECOMBINASE

HI1572] [SP:P46495]

Contig152G

15087800_f3_365

3486

7612

540

179

249

3.00E−21

sp [LN HSCB_ECOLI]

[AC:P36540] [GN.HSCB]

[OR:

ESCHERICHIA COLI

]

[DE:CHAPERONE PROTEIN

HSCB (HSC20)] [SP:P36540]

Contig152G

15625661_f2_197

3487

7613

195

64

NO-HIT

Contig152G

15630327_c1_507

3488

7614

339

112

NO-HIT

Contig152G

15641001_c2_587

3489

7615

357

118

NO-HIT

Contig152G

15711693_c1_543

3490

7616

798

265

358

8.40E−33

sp:[LN:YWFD_BACSU]

[AC:P39640] [GN:YWFD:IPA-

82D] [OR:

BACILLUS SUBTILIS

]

[EC:1.—.—.—] [DE:(ED 1.—.—.—)]

[SP:P39640]

Contig15S2G

15714787_f3_418

3491

7617

1008

335

417

4.70E−39

sp:[LN:YQAJ_BACSU]

[AC.P45907] [GN:YQAJ]

[OR:

BACILLUS SUBTILIS

]

[DE:HYPOTHETICAL 37.0 KD

PROTEIN IN SPOIIIC-CWLA

INTERGENIC REGION]

[SP:P45907]

Contig152G

15828390_c2_581

3492

7618

1584

527

333

8.50E−30

pir:[LN:S53867] [AC:553867]

[PN:cytosine methyltransferase

Dcm5a] [OR:

Halobacterium

salinarium

]

Contig152G

16120181 _f1_66

3493

7619

309

102

257

4.30E−22

pir:[LN:R3EC20]

[AC:A30425:A02748:S40547:G64

722:507374] [PN:ribosomal

protein S20] [GN:rpsT]

[CL:

Escherichia coli

ribosomal

protein 520] [OR:

Escherichia coli

]

[MP:0 min]

Contig152G

16135905_c1_452

3494

7620

1704

567

1983

5.40E−205

sp:[LN:RS1__ECOLI]

[AC:P02349:P77352]

[GN:RPSA:SSYF]

[OR:

ESCHERICHIA COLI

]

[DE:30S RIBOSOMAL PROTEIN

S1] [SP:P02349:P77352]

Contig152G

16439765_c3_789

3495

7621

942

313

550

3.80E−53

sp:[LN:MODA_ECOLI]

[AC:P37329] [GN:MODA]

[OR:

ESCHERICHIA COLI

]

[DE:MOLYBDATE-BINDING

PERIPLASMIC PROTEIN

PRECURSOR] [SP:P37329]

Contig152G

16516080_c3_695

3496

7622

1665

554

184

1.80E−12

gp:[GI:g3249594] [LN:AF065411]

[AC:AF065411] [PN:large

terminase subunit]

[OR:Methanobacterium phage

psiM2] [DE:Methanobacterium

phage psiM2, complete genome.]

[NT:ORF9; similar to

Bacilius

subtilis

phage SPP1 large]

Contig152G

16587706_c3_786

3497

7623

699

232

340

6.80E−31

sp [LN:NTAB_CHEHE]

[AC:P54990] [GN:NTAB:NMOB]

[OR:CHELATOBACTER

HEINTZII] [EC:1.14.13.—]

[DE:MONOOXYGENASE

COMPONENT B) (NTA-MO B)]

[SP:P54990]

Contig152G

16600276_c3_723

3498

7624

3480

1159

2898

5.90E−302

sp:[LN:MFD_ECOLI]

[AC:P30958:P77592] [GN:MFD]

[OR:

ESCHERICHIA COLI

]

[DE:TRANSCRIPTION-REPAIR

COUPLING FACTOR (TRCF)]

[SP:P30958:P77592]

Contig152G

16801027_c2_620

3499

7625

1182

393

787

2.90E−78

pir:[LN:SYECLA]

[AC:F64742:B28389:D33171:A28

390] [PN:lipid-A-disaccharide

synthase,] [GN:lpxB] [CL:lipid A

disaccharide synthase)

[OR:

Escherichia coli

]

[EC:2.4.1.182] [MP:4 min]

Contig152G

16833125_c1_528

3500

7626

861

286

840

7.10E−84

gp:[GI:g4323638] [LN:AF102513]

[AC:AF102513] [PN:regulatory

protein GdhBR] [GN:gdhBR]

[OR:

Pantoea citrea

] [DE:

Pantoea

citrea

regulatory protein GdhBR

(gdhBR) gene, complete cds.]

[NT:similar to the AraC-like

transcriptional]

Contig152G

16834650_c2_568

3501

7627

966

321

411

2.00E−38

sp:[LN:GSPK_PSEAE]

[AC:Q00518] [GN:XCPX]

[OR:

PSEUDOMONAS

AERUGINOSA

] [DE:GENERAL

SECRETION PATHWAY

PROTEIN K] [SP:Q00518]

Contig152G

16896043_f3_274

3502

7628

501

166

311

1.70E−27

sp:[LN:YMDC_ECOLI)

[AC:P75919] [GN:YMDC]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 55.9 KD

PROTEIN IN CSGC-MDOG

[NTERGENIC REGION]

[SP:P75919]

Contig152G

17065702_f1_35

3503

7629

183

60

NO-HIT

Contig152G

182801_c2_571

3504

7630

717

238

524

2.20E−50

sp:[LN:KCY_ECOLI]

[AC:P23863:P03823:P78263]

[GN:CMK:MSSA]

[OR:

ESCHERICHIA COLI

]

[EC:2.7.4.14] [pE:(CMP

KINASE) (MSSA PROTEIN)

(P25)]

[SP:P23863:P03823:P78263]

Contig152G

187763_c2_670

3505

7631

924

307

1518

1.00E−155

sp:[LN PQQB_ACICA]

[AC P07779] [GN:PQQB:PQQV]

[OR:

ACINETOBACTER

CALCOACETICUS

]

[DE:COENZYME PQQ

SYNTHESIS PROTEIN B

(COENZYME PQQ SYNTHESIS

PROTEIN V)] [SP:P07779]

Contig152G

19557942_c1_438

3506

7632

1200

399

1286

3.90E−131

pir:[LN:D64074] [AC:D64074]

[PN:phosphoglycerate kinase,]

[CL:phosphoglycerate kinase]

[OR:

Haemophilus influenzae

]

[EC:2.7.2.3]

Contig152G

19571877_f3_293

3507

7633

204

67

NO-HIT

Contig152G

19578177_c1_444

3508

7634

705

234

242

1.70E−20

sp:[LN:EXB1_SYNY3]

[AC:Q55834] [GN:SLL0477]

[OR:SYNECHOCYSTIS SP]

[SR:PCC 6803,] [DE:PUTATIVE

BIOPOLYMER TRANSPORT

EXBB-LIKE PROTEIN 1]

[SP:Q55834]

Contig152G

19689376_c3_727

3509

7635

528

175

188

8.70E−15

gp:[GI:e1357075:g3955017]

[LN:POL010393] [AC:AJ010393]

[PN:phaF protein] [GN:phaF]

[FN:regulator associated to the]

[OR:

Pseudomonas oleovorans

]

[DE:

Pseudomonas oleovorans

phaI

and phaF genes, and ORF1,

ORF2(partial) and ORF3.]

Contig152G

19719687_c3_715

3510

7636

1803

600

164

3.70E−17

sp:[LN:DPPA_ECOLI]

[AC:P23847] [GN:DPPA]

[OR:

ESCHERICHIA COLI

]

[DE:PROTEIN) (DBP)]

[SP:P23847]

Contig152G

19953811_f2_250

3511

7637

930

309

294

5.10E−26

sp:[LN:YBJE_ECOLI]

[AC:P75826] [GN:YBJE]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 34.4 KD

PROTEIN IN POXB-AQPZ

INTERGENIC REGION]

[SP:P75826]

Contig152G

20031282_c1_471

3512

7638

513

170

NO-HIT

Contig152G

20080050_f2_156

3513

7639

453

150

263

9.90E−23

gp:[GI:e1316902:g3451442]

[LN:SC1F2] [AC:AL031350]

[PN:hypothetical protein

SC1F2.10] [GN:SC1F2.10]

[OR:

Streptomyces coelicolor

]

[DE:

Streptomyces coelicolor

cosmid 1F2.] [NT:SC1F2.10,

unknown, len: 135; similar to]

Contig152G

20101528_f2_249

3514

7640

603

200

NO-HIT

Contig152G

20187827_c3_795

3515

7641

1077

358

1494

3.50E−153

pir:[LN:JC4222] [AC:JC4222]

[PN:membrane dipeptidase,

homolog] [GN:acdp]

[CL:membrane dipeptidase]

[OR:

Acinetobacter calcoaceticus

]

[EC:3.4.13.19]

Contig152G

20397293_f2_160

3516

7642

960

319

455

4.40E−43

pir:[LN:C64906] [AC:C64906]

[PN:probable membrane protein

b1520] [OR:

Escherichia coli

]

Contig152G

20447160_f1_44

3517

7643

417

138

221

2.80E−18

sp:[LN:HNT1_YEAST]

[AC:Q04344]

[GN:HNTI:HITI:YDL125C]

[OR:

SACCHAROMYCES

CEREVISIAE

] [SR:,BAKER'S

YEAST] [DE:HIT FAMILY

PROTEIN 1] [SP:Q04344]

Contig152G

20579426_c3_729

3518

7644

1257

418

1850

6.60E−191

gp:[GI:e1i73487:g2623971]

[LN:ASAJ2316] [AC:AJ002316]

[PN:terminal alkane hydroxylase]

[GN:alkM] [FN:necessary for

growth on alkanes]

[OR:Acinetobacter sp. ADP1]

[DE:Acinetobacter sp. ADP1 alkR

& alkM genes, ORF1 & ORF4.]

Contig152G

2127202_c2_609

3519

7645

294

97

NO-HIT

Contig152G

21492187_c1_542

3520

7646

1302

433

405

880E−38

gp[GI:g3643991] [LN:AF087482]

[AC:AF087482] [PN:dienelactone

hydrolase] [GN:clcD]

[OR:

Pseudomonas aeruginosa

]

[DE:

Pseudomonas aeruginosa

clcC

and ohbH genes, Lys-R type

regulatoryprotein (clcR),

chlorocatechol-1,2-dioxygenase

(clcA),chloromuconate

cycloisomerase (clcB),

dienelactone hydrolase(clcD),

maleylacetate reductase (clcE),

transposase (tnpA),ATP-binding

protein (tnpB), putative regulatory

protein (ohbR),o-halobenzoate

dioxygenase reductase (dhbA), o-

halobenzoatedioxygenase alpha

subunit (ohbB), o-halobenzoate

dioxygenase betasubunit (ohbC), o-

halobenzoate dioxygenase

ferredoxin (ohbD),putative

membrane spanning protein

(ohbE), ATP-binding

protein(ohbF), putative substrate

binding protein (ohbG), and

putativedioxygenase genes,

complete cds; and unknown gene.]

Contig152G

21535205_c1_464

3521

7647

795

264

234

1.20E−19

gp:[GI:g3294483]

[LN:STAF001386]

[AC:AF001386] [PN:unknown]

[OR:

Salmonella typhimurium

]

[DE:

Salmonella typhimurium

sigma-E factor regulatory protein

(rseA)gene, partial cds; sigma-E

factor regulatory protein

(rseB),sigma-F factor regulatory

protein (rseC), truncated GTP-

bindingprotein (lepA), complete

cds; Gifsy-1 prophage left-end

portion:putative integrase (int),

putative excisionase (xis),

andexodeoxyribonuclease VIII

(recE) genes, complete cds; and

unknowngenes.] [NT:ORF-9;

similar to

Escherichia coli

DnaC

protein]

Contig152G

21603412_c1_553

3522

7648

762

253

1314

4.20E−134

sp [LN PQQC_ACICA]

[AC:P07780] [GN:PQQC:PQQI]

[OR:

ACINETOBACTER

CALCOACETICUS

]

[DE:COENZYME PQQ

SYNTHESIS PROTEIN C

(COENZYME PQQ SYNTHESIS

PROTEIN 1)] [SP:P07780]

Contig152G

21619437_c2_647

3523

7649

2244

747

703

2.30E−69

gp:[GI:g1753160]

[LN:BBU79564] [AC:U79564]

[PN:unidentified ferric siderophore

receptor] [GN:bfrC]

[OR:

Bordetella bronchiseptica

]

[DE:

Bordetetia bronchiseptica

unidentified ferric siderophore

receptor(bfrC) gene, complete

cds.]

Contig152G

21673933_c2_608

3524

7650

2280

759

888

1.20E−96

gp:[GI:d1038436:g4239823]

[LN:AB010890] [AC:AB010890

[PN:IutA] [GN:lutA] [OR:

Vibrio

orientalis

] [SR:

Vibrio orientalis

(isolate:SD004) DNA] [DE:

Vibrio

orientalis

gene for IutA, complete

cds.]

Contig152G

21676556_f1_73

3525

7651

765

254

206

2.00E−16

sp:[LN:TONB_PSEAE]

[AC:Q51368] [GN:TONB]

[OR:

PSEUDOMONAS

AERUGINOSA

] [DE:TONB

PROTEIN] [SP:Q51368]

Contig152G

21678193_c3_689

3526

7652

234

77

NO-HIT

Contig152G

21678303_c2_560

3527

7653

273

90

NO-HIT

Contig152G

21694215_c1_445

3528

7654

444

147

141

8.30E−10

pir:[LN:S74451] [AC:S74451]

[PN:hypothetical protein sl11405]

[OR:Synechocystis sp.] [SR:PCC

6803, , PCC 6803] [SR:PCC 6803,]

Contig152G

2177_f1_32

3529

7655

222

73

NO-HIT

Contig152G

21914213_c1_490

3530

7656

1743

580

1272

1.20E−129

gp:[GI:g2665708] [LN:AF035413]

[AC:AF035413] [PN:AgaD]

[GN:agaD] [OR:

Agrobacterium

tumefaciens

] [DE:

Agrobacterium

tumefaciens

AgaA, AgaC, AgaB,

AgaD, AgaE, AgaF, AgaG,MoaR;

MoaB, MoaC, MoaD, and MoaA

genes, complete cds.]

Contig152G

22085077_c2_589

3531

7657

186

61

NO-HIT

Contig152G

22150408_c2_643

3532

7658

747

248

342

4.20E−31

pir:[LN:D70044] [AC:D70044]

[PN:transcription regulator GntR

family homolog yvoA] [GN:yvoA]

[CL:transcription regulator GntR]

[OR:

Bacilius subtilis]

Contig152G

22305438_f1_288

3533

7659

1356

451

915

8.00E−92

gp:[GI:g3172116]

[LN:ACCPCAOP]

[AC:L05770:U04359:M33798:U2

0284:U11554:L13114:L03407]

[PN:putative transport protein]

[GN:pcaK] [OR:Acinetobacter sp.

ADP1] [DE:Acinctobacter sp.

ADP1 pca-qui-pob supraoperonic

cluster, completesequence.]

Contig152G

22459512_f3_430

3534

7660

2553

850

566

2.60E−53

sp:[LN:OSTA_HAEIN]

[AC:P44846]

[GN:IMP:OSTA:HI0730]

[OR:

HAEMOPHILUS

INFLUENZAE

] [DE:ORGANIC

SOLVENT TOLERANCE

PROTEIN HOMOLOG

PRECURSOR] [SP:P44846]

Contig152G

22541086_c3_754

3535

7661

237

78

NO-HIT

Contig152G

22547318_c1_521

3536

7662

1104

367

1298

2.10E−132

pir:[LN:SYECKR]

[AC:G65005:S00509:S28890:JV0

091:141140] [PN:chorismate

synthase,:5-enolpyruvylshikimate-

3-phosphate phospholyase]

[GN:aroC] [CL:chorismate

synthase] [OR:

Escherichia coli

]

[EC:4.6.1.4] [MP:51 min]

Contig152G

22657582_c3_693

3537

7663

792

263

108

2.90E−07

sp:[LN:TERS_BPSF6]

[AC:Q38627] [GN:1]

[OR:BACTERIOPHAGE

SF6:BACTERIOPHAGE RHO-

i5] [DE:TERMINASE SMALL

SUBUNIT (G1P)] [SP:Q38627]

Contig152G

22662502_c2_562

3538

7664

1026

341

518

9.40E−50

gp:[GI:g4545243] [LN:AF116284]

[AC:AF116284] [PN:unknown]

[OR:

Pseudomonas aeruginosa

]

[DE:

Pseudomonas aeruginosa

DnaJ-like protein gene, complete

cds; andunknown genes.]

NT:Orf338; similar to

Chlorobium tepidum

OrfT]

Contig152G

22665900_c2_611

3539

7665

522

173

376

1.00E−34

sp:[LN COBP_PSEDE]

[AC:P29931] [GN:COBP]

[OR:

PSEUDOMONAS

DENITRIFICANS

]

[DE:COBINAMIDE KINASE/

COBINAMIDE PHOSPHATE

GUANYLYLTRANSFERASE]

[SP:P29931]

Contig152G

22695375_c2_629

3540

7666

312

103

146

2.50E−10

sp:[LN:YCGL_ECOLI]

[AC:P76003] [GN:YCGL]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 12.4 KD

PROTEIN IN MINC-SHEA

INTERGENIC REGION]

[SP:P76003]

Contig152G

22775276_c3_771

3541

7667

1851

616

326

6.20E−43

gp:[GI:g2576391]

[LN:CVU84759] [AC:U84759]

[PN:adenylylsulfate reductase

alpha subunit] [GN:aprA]

[OR:

Chromatium vinosum

]

[DE:

Chromatium vinosum

sulfate

adenylyltransferase

(sat),adenylylsulfate reductase beta

subunit (aprB), and

adenylylsulfatereductase alpha

subunit (aprA) genes, complete

cds.] [NT:flavoprotein subunit]

Contig152G

22863175_f3_435

3542

7668

189

62

NO-HIT

Contig152G

22890955_c3_684

3543

7669

609

202

404

1.10E−37

gp:[GI:g4155434] [LN:AE001516]

[AC:AE001516:AE001439]

[PN:putative] [GN:jhp0867]

[OR:

Helicobacter pylori

J99]

[DE:

Helicobacter pylori

, strain J99

section 77 of 132 of the

completegenome.] [NT:similar to

H. pylori

26695 gene HP0933]

Contig152G

22933308_f3_291

3544

7670

660

219

725

1.10E−71

gp:[GI:e321777:g2370587]

[LN:XCLPS1J] [AC:Y11313]

[PN:IpsJ protein] [GN:IpsJ]

[OR:

Xanthomonas campestris

]

[DE:

X.campestris

lpsl, lpsJ, xanA

genes and orfX.]

Contig152G

23445377_c2_621

3545

7671

1071

356

554

1.40E−53

pir:[LN:C64816] [AC:C64816]

[PN:hypothetical protein b0795

precursor] [OR:

Escherichia coli

]

Contig152G

23469026_c1_541

3546

7672

222

73

NO-HIT

Contig152G

23476686_f2_220

3547

7673

909

302

434

7.50E−41

gp:[GI:g3916254] [LN:AF087669]

[AC:AF087669] [PN:ExbB]

[GN:exbB] [OR:

Bordetella

bronchiseptica

] [DE:

Bordetella

bronchiseptica

TonB (tonB), ExbB

(exbB), and ExbD (exbD)genes,

complete cds.]

Contig152G

23489678_c1_446

3548

7674

996

331

331

6.10E−30

sp:[LN:HOLB_PSEAE]

[AC:P52024] [GN:HOLB]

[OR:

PSEUDOMONAS

AERUGINOSA

] [EC:2.7.7.7]

[DE:DNA POLYMERASE III,

DELTA'SUBUNIT,] [SP:P52024]

Contig152G

23519067_f2_248

3549

7675

960

319

110

0.00095

pir:[LN:JN0845]

[AC:JN0845:S31825]

[PN:enterohemolysin 1:33K

enterohemolysin protein]

[OR:

Escherichia coli

]

Contig152G

23523452_c1_447

3550

7676

381

126

140

1.10E−09

sp:[LN:GSPI_KLEPN]

[AC:P15748] [GN:PULI]

[OR:

KLEBSIELLA

PNEUMONIAE

] [DE:PROTEIN

PULI)] [SP:P15748]

Contig152G

23538275_c1_335

3551

7677

231

76

NO-HIT

Contig152G

23600187_c3_681

3552

7678

639

212

126

3.20E−07

pir:[LN:B70391] [AC:B70391]

[PN:transcription regulator

TetR/AcrR family] [GN:acrR1]

[OR:

Aquifex aeolicus

]

Contig152G

23609385_f1_51

3553

7679

1161

386

1020

6.00E−103

sp:[LN:AROF_ECOLI]

[AC:P00888] [GN:AROF)

[OR:

ESCHERICHIA COLI

]

[EC:4.1.2.15]

[DE:SYNTHETASE) (3-DEOXY-

D-ARABINO-

REPTULOSONATE 7-

PHOSPHATE SYNTHASE)]

[SP:P00888]

Contig152G

23610943_c2_645

3554

7680

852

283

638

1.80E−62

sp:[LN:Y412_METJA]

[AC:Q57855] [GN:MJ0412]

[OR:

METHANOCOCCUS

JANNASCHII

]

[DE:HYPOTHETICAL ABC

TRANSPORTER ATP-BINDING

PROTEIN MJ0412] [SP:Q57855]

Contig152G

23619003_f2_186

3555

7681

1560

519

133

1.30E−05

sp:[LN:YFPB_PSEAE]

[AC:P42514]

[OR:

PSEUDOMONAS

AERUGINOSA

]

[DE:HYPOTHETICAL 42.2 KD

PROTEIN IN FPTB 3′REGION]

[SP:P42514]

Contig152G

23634700_c3_779

3556

7682

831

276

NO-HIT

Contig152G

23853760_f3_436

3557

7683

261

86

NO-HIT

Contig152G

24062537_f2_135

3558

7684

1107

368

433

9.50E−41

gp:[GI:e314019:g2072731]

[LN:PPY12655] [AC:Y12655]

[PN:putative regulatory protein]

[GN:oxoS] [OR:

Pseudomonas

putida

] [DE:

P.putida

oxoS, oxoO,

oxoH genes.]

Contig152G

24071001 _f1_126

3559

7685

966

321

395

1.00E−36

sp:[LN:YMDC_ECOLI]

[AC:P75919] [GN:YMDC]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 55.9 KD

PROTEIN IN CSGC-MDOG

INTERGENIC REGION]

[SP:P75919]

Contig152G

24222212_f1_40

3560

7686

198

65

NO-HIT

Contig152G

24234807_c2_590

3561

7687

579

192

NO-HIT

Contig152G

24238758_c2_593

3562

7688

2679

892

138

0.00036

gp:[GI:e229492:g1765916]

[LN:ECELIM] [AC:X96495]

[PN:eliminase] [OR:

Escherichia

coli

] [DE:

E.coli

gene encoding

eliminase.]

Contig152G

24240635_c1_462

3563

7689

339

112

NO-HIT

Contig152G

24245875_f1_15

3564

7690

1221

406

1330

8.40E−136

gp:[GI:g1857942]

[LN:PAU88653] [AC:U88653]

[PN:thiolase] [GN:phaA]

[OR:

Pseudomonas aeruginosa

]

[DE:

Pseudomonas aeruginosa

thiolase (phaA) gene, complete

cds.]

Contig152G

24253217_c3_701

3565

7690

378

125

NO-HIT

Contig152G

24257958_c2_612

3566

7692

612

203

200

4.70E−16

pir:[LN:D70450] [AC:D70450]

[PN:phosphoglycerate mutase]

[GN:gpmA] [CL:phosphoglycerate

mutase homology] [OR:

Aquifex

aeolicus

]

Contig152G

24258468_c3_721

3567

7693

519

172

393

1.70E−36

sp:[LN:MENG_ECOLI]

[AC:P32165] [GN:MENG]

[OR:

ESCHERICHIA COLI

]

[EC:2.1.—.—] [DE:(EC 2.1.—.—)]

[SP:P32165]

Contig152G

24260453_f1_50

3568

7694

900

299

418

3.70E−39

pir:[LN:E69853] [AC:E69853]

[PN:conserved hypothetical

protein yjnA] [GN:yjnA]

[OR:

Bacillus subtitis

]

Contig152G

24306512_f1_121

3569

7695

570

189

160

8.10E−12

gp:[GI:e1312906:g3355680]

[LN:SC1C2] [AC:AL031124]

[PN:putative transcriptional

regulator] [GN:SC1C2.13]

[OR:

Streptomyces coelicolor

]

[DE:

Streptomyces coelicolor

cosmid 1C2.] [NT:SC1C2.13,

probable transcriptional regulator,

len:]

Contig152G

24319701_c1_466

3570

7696

222

73

NO-HIT

Contig152G

24322188_c2_555

3571

7697

207

68

NO-HIT

Contig152G

24398316_f2_219

3572

7698

1734

577

295

3.30E−27

gp:[GI:g2529416] [LN:SSU73935]

[AC:U73935] [PN:unknown]

[OR:Shewanella sp. SCRC-2738]

[DE:Shewanella sp. SCRC-2738

eicosapentaenoic acid (EPA)

synthesis genecluster, complete

sequence.] [NT:ORF3]

Contig152G

24423387_c2_594

3573

7699

402

133

NO-HIT

Contig152G

24424176_c2_655

3574

7700

1002

333

288

2.20E−25

gp:[GI:e314019:g2072731]

[LN:PPY12655] [AC:Y12655]

[PN:putative regulatory protein]

[GN:oxoS] [OR:

Pseudomonas

putida

] [DE:

P.putida

oxoS, oxoO,

oxoH genes.]

Contig152G

24616337_c2_668

3575

7701

201

66

NO-HIT

Contig152G

24619033_c1_516

3576

7702

771

256

488

1.40E−46

sp:[LN:YAFE_ECOLI]

[AC:P30866] [GN:YAFE]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 23.0 KD

PROTEIN IN ASPU-MLTD

INTERGENIC REGION

(ORF207)] [SP:P30866]

Contig152G

24642278_c3_682

3577

7703

561

186

107

4.00E−06

sp:[LN:GSPG_KLEPN]

[AC:P15746] [GN:PULG]

[OR:

KLEBSIELLA]

PNEUMONIAE

] [DE:PROTEIN

PULG)] [SP:P15746]

Contig152G

2461537_f2_179

3578

7704

1092

363

378

6.40E−35

gp:[GI:g4160475] [LN:AF109909]

[AC:AF109909] [PN:PHA

synthase PhaC] [GN:phaC]

[OR:

Bacillus megaterium

]

[DE:

Bacillus megaterium

polyhydroxyalkanoate gene

cluster, completesequence.]

Contig152G

24787932_c3_738

3579

7705

1884

627

589

2.80E−57

gp:[GI:g4151936] [LN:AF110737]

[AC:AF110737] [PN:RhsF]

[GN:rhsF] [FN:siderophore

biosynthesis] [OR:

Sinorhizobium

meliloti] [DE:

Rhizobium melitoti

strain 2011 rhizobactin regulon

completesequence.] [NT:similar to

IucC]

Contig152G

24823375_c3_700

3580

7706

423

140

NO-HIT

Contig152G

24890887_f1_43

3581

7707

330

109

NO-HIT

Contig152G

25415878_c2_607

3582

7708

1437

478

886

9.50E−89

gp:[GI:g4151935] [LN:AF110737]

[AC:AF110737] [PN:RhsE]

[GN:rhsE] [FN:siderophore

biosynthesis] [OR:

Sinorhizobium

meliloti

] [DE:

Rhizobium melitoti

strain 2011 rhizobactin regulon,

completesequence] [NT:similar to

AlcA]

Contig152G

25500952_c1_453

3583

7709

303

100

292

8.30E−26

sp:[LN:IHFB_ERWCH]

[AC:P37983] [GN:HIMD]

[OR:

ERWINIA

CHRYSANTHEMI

]

[DE:INTEGRATION HOST

FACTOR BETA-SUBUNIT (IHF-

BETA)] [SP:P37983]

Contig152G

25570302_c1_508

3584

7710

2175

724

224

1.70E−17

sp:[LN:CBBY_RHOCA]

[AC:O33513] [GN:CBBY]

[OR:

RHODOBACTER

CAPSULATUS

]

[SR:,

RHODOPSEUDOMONAS

CAPSULATA

] [DE:CBBY

PROTEIN] [SP:O33513]

Contig152G

25626662_f2_159

3585

7711

1293

430

634

4.50E−62

pir:[LN:B70195] [AC:B70195]

[PN:response regulatory protein

(rrp-2) homolog] [CL:nitrogen

assimilation regulatory protein

ntrC:response regulator

homology:RNA polymerase sigma

factor interaction domain

homology] [OR:

Borrelia

burgdorferi

] [SR:, Lyme disease

spirochete]

Contig152G

25660050_c3_683

3586

7712

723

240

172

4.30E−13

gp:[GI:g3978484] [LN:AF092918]

[AC:AF092918] [PN:outer

membrane secretion protein W]

[GN:xcpW] [OR:

Pseudomonas

alcaligenes

] [DE:

Pseudomonas

alcaligenes

outer membrane Xcp-

secretion system genecluster.]

NT:XcpW]

Contig152G

25665968_f1_99

3587

7713

216

71

NO-HIT

Contig152G

25785967_f1_33

3588

7714

1152

383

328

1.30E−29

sp:[LN:YTH3_RHOSO]

[AC:P46372]

[OR:RHODOCOCCUS SP]

[DE:HYPOTHETICAL 47.3 KD

PROTEIN IN THCA 5'REGION

(ORF3)] [SP:P46372]

Contig152G

25879758_f2_205

3589

7715

414

137

562

2.00E−54

pir:[LN:H65029] [AC:H65029]

[PN:hypothetical protein b2529]

[CL:Yeast nitrogen fixation

protein:nitrogen fixation protein

homology] [OR:

Escherichia coli

]

Contig152G

26056532_c3_698

3590

7716

669

222

131

1.30E−08

gp:[GI:g262360I] [LN:AF027874]

[AC:AF027874] [PN:mucin-like

protein] [OR:

Trypanosoma cruzi

]

[DE:

Trypanosoma cruzi

mucin-

like protein mRNA, partial cds.]

[RE:

Contig152G

26211712_c1_533

3591

7717

912

303

361

4.10E−33

sp:[LN:YJIE_ECOLI]

[AC:P39376] [GN:YJIE]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL

TRANSCRIPTIONAL

REGULATOR IN UXUR-IADA

INTERGENIC REGION]

[SP:P39376]

Contig152G

26257638_f3_358

3592

7718

1227

408

1888

6.20E−195

gp:[GI:e1173388:g2623972]

[LN:ASAJ2316] [AC:AJ002316]

[PN:putative acyl-CoA

dehydrogenase] [GN:ORF4]

[OR:Acinetobacter sp. ADP1]

[DE:Acinetobacter sp. ADP1 alkR

& alkM genes, ORF1 & ORF4.]

Contig152G

26305318_f3_420

3593

7719

396

131

NO-HIT

Contig152G

26305430_f2_221

3594

7720

438

145

255

6.90E−22

gp:[GI:g3916255] [LN:AF087669]

[AC:AF087669] [PN:ExbD]

[GN:exbD] [OR:

Bordetella

bronchiseptica

] [DE:

Bordetella

bronchiseptica

TonB (tonB), ExbB

(exbB), and ExbD (exbD)genes,

complete cds.]

Contig152G

26345328_c3_677

3595

7721

1728

575

1141

9.00E−116

sp:[LN:MSBA_HAEIN]

[AC:P44407] [GN:MSBA:MSH-

1:HI0060] [OR:

HAEMOPHILUS

INFLUENZAE

] [DE:PROBABLE

TRANSPORT ATP-BINDING

PROTEIN MSBA] [SP:P44407]

Contig152G

26359375_f1_4

3596

7722

1893

630

963

6.50E−97

sp:[LN:YPQL_ACICA]

[AC:P07778]

[OR:

ACINETOBACTER

CALCOACETICUS

]

[DE:HYPOTHETICAL PROTEIN

IN PQQ-V 5′REGION (ORF L)

(FRAGMENT)] [SP:P07778]

Contig152G

26360952_c3_793

3597

7723

285

94

455

4.40E−43

sp:[LN:PQQD_ACICA]

[AC:P07781] [GN:PQQD:PQQII]

[OR:

ACINETOBACTER

CALCOACETICUS

]

[DE:COENZYME PQQ

SYNTHESIS PROTEIN D

(COENZYME PQQ SYNTHESIS

PROTEIN II)] [SP:P07781]

Contig152G

26369017_f1_122

3598

7724

312

103

188

8.70E−15

sp:[LN:HLYU_VIBCH]

[AC:P52695] [GN:HLYU]

[OR:

VIBRIO CHOLERAE

]

[DE:TRANSCRIPTIONAL

ACTIVATOR HLYU]

[SP:P52695]

Contig152G

26565930_f2_270

3599

7725

1332

443

522

3.50E−50

sp:[LN:SURA_ECOLI]

[AC:P21202:P75630] [GN:SURA]

[OR:

ESCHERICHIA COLI

]

[EC:52.1.8] [DE:SURA),

(PPIASE) (ROTAMASE C)]

[SP:P21202:P75630]

Contig152G

26594062_c2_658

3600

7726

1257

418

409

3.30E−38

gp:[GI:e304489:g2154927]

[LN:PFSTYABCD] [AC:Z92524]

[PN:StyA protein] [GN:styA]

[FN:Main component of styrene

monooxygenase]

[OR:

Pseudomonas fluorescens

]

[DE:

P.fluorescens

styA, styB, styC

and styD genes.]

Contig152G

26648462_c1_505

3601

7727

612

203

191

4.20E−15

pir:[LN:F69218] [AC:F69218]

[PN:conserved hypothetical

protein MTH888] [GN:MTH888]

[CL:

Methanococcus jannasehii

conserved hypothetical protein

MJ0644] [OR:

Methanobacterium

thermoautotrophicum

]

Contig152G

26695153_c1_534

3602

7728

915

304

493

4.20E−47

sp:[LN:NAHR_PSEPU]

[AC:P10183] [GN:NAHR]

[OR:

PSEUDOMONAS PUTIDA

]

[DE:TRANSCRIPTIONAL

ACTIVATOR PROTEIN NAHR]

[SP:P10183]

Contig152G

26775387_c3_724

3603

7729

1485

494

329

4.20E−27

gp:[GI:d1014695:g1754636]

[LN:D89622] [AC:D89622]

[PN:adenylate cyclase] [GN:cyaA]

[OR:Anabaena sp.] [SR:Anabaena

sp. (strain:PCC7120) DNA]

[EC:4.6.1.1] [DE:Anabaena sp.

cyaA gene for adenylate cyctase,

complete cds.]

Contig152G

2869026_f2_207

3604

7730

1863

620

1583

1.30E−162

sp:[LN:HSCA_HAEIN]

[AC:P44669] [GN:HSCA:HI0373]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:CHAPERONE PROTEIN

HSCA (HSC66)] [SP:P44669]

Contig152G

2929077_c3_781

3605

7731

786

261

882

2.50E−88

sp:[LN:YXJF_BACSU]

[AC:P42317] [GN:YXJF:N15M]

[OR:

BACILLUS SUBTILIS

]

[EC:1,—.—.—] [DE:(EC 1.—.—.—)]

[SP:P42317]

Contig152G

2931583_c2_641

3606

7732

612

203

358

8.40E−33

sp:[LN:ACPD_ECOLI]

[AC:P41407:P77143] [GN:ACPD]

[OR:

ESCHERICHIA COLI

]

[DE:ACYL CARRIER PROTEIN

PHOSPHODIESTERASE (ACP

PHOSPHODIESTERASE)]

[SP:P41407:P77143]

Contig152G

29723305_c2_613

3607

7733

1584

527

136

3.90E−07

gp:[GI:g4191340] [LN:AF084943]

[AC:AF084943] [PN:multiple

inositol polyphosphate

phosphatase] [OR:

Homo sapiens

]

[DE:

Homo sapiens

multiple

inositol polyphosphate

phosphatase mRNA,complete cds.]

NT:similar to histidine acid

phosphatase]

Contig152G

29860957_c1_465

3608

7734

300

99

NO-HIT

Contig152G

29971010_c3_703

3609

7735

684

227

NO-HIT

Contig152G

3001408_c1_449

3610

7736

1149

382

409

3.30E−38

gp:[GI:g485111] [LN:CELF09F7]

[AC:U00050] [GN:F09F7.4]

[OR:

Caenorhabditis elegans

]

[SR:

Caenorhabditis elegans

strain=Bristol N2]

[DE:

Caenorhabditis elegans

cosmid F09F7.]NT:similar to

enoyl-CoA hydratases; highest

similarity]

Contig152G

3004692_c2_653

3611

7737

297

98

86

0.00056

gp:[GI:g3883021] [LN:AF074611]

[AC:AF074611] [PN:unknown]

[GN:Y1020] [OR:

Yersinia pestis

]

[DE:

Yersinia pestis

plasmid pMT-

1, complete plasmid sequence.]

[NT:f140; 35 pct identical (1 gap)

to 48 residues of an]

Contig152G

3018817_c1_524

3612

7738

1149

382

753

1.20E−74

pir:[LN:H69789] [AC:H69789]

[PN:L-iditol 2-dehydrogenase,

homolog ydjL:sorbitol

dehydrogenase homolog]

[GN:ydjL] [CL:alcohol

dehydrogenase:long-chain alcohol

dehydrogenase homology]

[OR:

Bacillus subtilis

]

[EC:1.1.1.14]

Contig152G

30270442_c2_649

3613

7739

240

79

NO-HIT

Contig152G

30292177_c3_722

3614

7740

795

264

340

5.10E−39

gp:[GI:e1419919:g4539003]

[LN:ATT5L19] [AC:AL049481]

[PN:putative protein]

[GN:T5L19.130] [OR:

Arabidopsis

thaliana

] [SR:thale cress]

[DE:

Arabidopsis thaliana

DNA

chromosome 4, BAC clone T5L19

(ESSAproject).] [NT:contains EST

gb:Aa394790,R30123]

Contig152G

30745325_c3_796

3615

7741

192

63

NO-HIT

Contig152G

31251577_c2_610

3616

7742

1524

507

104

2.80E−05

sp:[LN:YFPB_PSEAE]

[AC:P42514]

[OR:

PSEUDOMONAS

AERUGINOSA

]

[DE:HYPOTHETICAL 42.2 KD

PROTEIN IN FPTB 3'REGION]

[SP:P42514]

Contig152G

31254592_c3_719

3617

7743

747

248

173

3.40E−13

pir:[LN:F69896] [AC:F69896]

[PN:conserved hypothetical

protein yoaM] [GN:yoaM]

[OR:

Bacillus subtilis

]

Contig152G

31416011 _f1_62

3618

7744

489

162

406

6.90E−38

gp:[GI:g3046321] [LN:AF010139]

[AC:AF010139.] [PN:unknown]

[OR:

Azotobacter vinelandii

]

[DE:

Azotobacter vinelandii

iron-

sulfur cluster assembly gene

cluster,suhB, cysE2, iscS, iscU,

iscA, hscB, hscA and fdx genes

completecds; ndk gene, partial

cds.] [NT:orf2]

Contig152G

31527277_f3_419

3619

7745

252

83

121

1.10E−07

gp[GI:g2731435]

[LN PHU73302] [AC:U73302]

[PN.FIS] [OR:

Pasteurella

haemolytica

] [DE:

Pasteurella

haemolytica

RNAse T, transferrin

binding protein B,transferrin

binding protein A and FIS genes,

completecds.] [NT:similar to

factor for inversion stimulation]

Contig152G

31888_f2_198

3620

7746

1386

461

434

2.60E−45

gp:[GI:g3859609] [LN:T15B16]

[AC:AF104919] [GN:T15B16.14]

[OR:

Arabidopsis thaliana

]

[SR:thale cress] [DE:

Arabidopsis

thaliana

BAC TI5B16.]

[NT:

Arabidopsis thaliana

ABCI

protein (GB:AJ001158)]

Contig152G

32039582_c2_586

3621

7747

387

128

NO-HIT

Contig152G

32067926_f3_334

3622

7748

1149

382

215

2.70E−15

gp:[GI:e235755:g1922276]

[LN:EVPORIN] [AC:X97062]

[PN:porin]

[OR:

Ectothiorhodospira vacuolata

]

[DE:

E.vacuolata

gene encoding

porin.]

Contig152G

32071000_c3_772

3623

7749

1446

481

222

2.40E−16

gp:[GI:g3420605] [LN:AF075709]

[AC:AF075709] [PN:putative

sulfonate binding protein

precursor] [GN:ssuA]

[OR:

Pseudomonas putida

]

[DE:

Pseudomonas putida

LsfA

(lsfA), complete cds; and ssu

locus,complete sequence.]

NT:SsuA]

Contig152G

32143875_c1_463

3624

7750

408

135

NO-HIT

Contig152G

33205150_f2_134

3625

7751

1068

355

1550

4.10E−159

gp:[GI:g3511234] [LN:AF071556]

[AC:AF071556] [PN:anthranilate

dioxygenase reductase] [GN:antC]

[OR:Acinetobacter sp. ADP1]

[DE:Acinetobacter sp. ADP1

anthranilate dioxygenase large

subunit(antA), anthranilate

dioxygenase small subunit (antB),

andanthranilate dioxygenase

reductase (antC) genes, complete

cds.]

Contig152G

33225002_c1_442

3626

7752

657

218

401

2.30E−37

sp:[LN:GIDB_ECOLI]

[AC:P17113] [GN:GIDB]

[OR:

ESCHERICHIA COLI

]

[DE:GLUCOSE INHIBITED

DIVISION PROTEIN B]

[SP:P17113]

Contig152G

33297167_f2_157

3627

7753

960

319

235

9.10E−20

pir:[LN:G69897] [AC:G69897]

[PN:conserved hypothetical

protein yoaV] [GN:yoaV]

[OR:

Bacillus subtilis

]

Contig152G

33297312_f3_296

3628

7754

1326

441

1205

1.50E−122

gp:[GI:g1206033] [LN:PPU48776]

[AC:U48776] [PN:dicarboxylic

acid transport protein] [GN:pcaT]

[OR:

Pseudomonas putida

]

[SR:

Pseudomonas putida

strain=PRS2000 (PRS1)]

[DE:

Pseudomonas putida

dicarboxylic acid transport protein

(pcaT) gene,complete cds.] [NT:;

PcaT; associated with aromatic

hydrocarbon]

Contig152G

33364432_c2_599

3629

7755

780

259

NO-HIT

Contig152G

33446052_c1_501

3630

7756

1800

599

805

3.60E−80

gp:[GI:g4151933] [LN:AF110737]

[AC:AF110737] [PN:RhsC]

[GN:rhsC] [FN:siderophore

biosynthesis] [OR:

Sinorhizobium

meliloti

] [DE:

Rhizobium melitoti

strain 2011 rhizobactin regulon,

completesequence.] [NT:similar to

IucA]

Contig152G

33448750_c3_766

3631

7757

1425

474

1440

1.90E−147

pir:[LN:JC4793] [AC:JC4793]

[PN:dihydrolipoamide

dehydrogenase,:diaphorase:lipoami

de reductase (NADH):lipog1

dehydrogenase] [GN:acoD]

[CL:dihydrolipoamide

dehydrogenase:dihydrolipoamide

dehydrogenase homology]

[OR:

Klebsiella pneumoniae

]

[EC:1.8.1.4]

Contig152G

33478441_c1_530

3632

7758

858

285

421

1.80E−39

sp:[LN:Y413_METJA]

[AC:Q57856] [GN:MJ0413]

[OR:

METHANOCOCCUS

JANNASCHII

] [DE:PUTATIVE

ABC TRANSPORTER

PERMEASE PROTEIN MJ0413]

[SP:Q57856]

Contig152G

33712785_c1_517

3633

7759

1215

404

1289

1.90E−131

sp:[LN:METZ_PSEAE]

[AC:P55218] [GN:METZ]

[OR:

PSEUDOMONAS

AERUGINOSA

] [EC:4.2.99.—]

[DE:O-

SUCCINYLHOMOSERINE

SULFHYDRYLASE, (OSH

SULFHYDRYLASE)]

[SP:P55218]

Contig152G

33785938_f2_141

3634

7760

717

238

857

1.10E−85

gp:[GI:e321778:g2370588]

[LN:XCLPSIJ] [AC:Y11313]

[PN:IpsJ protein] [GN:lpsI]

[OR:

Xanthomonas campestris

]

[DE:

X.campestris

lpsI, lpsJ, xanA

genes and orfX.]

Contig152G

33790818_f1_8

3635

7761

249

82

NO-HIT

Contig152G

33834427_c1_478

3636

7762

222

73

NO-HIT

Contig152G

33985836_c2_592

3637

7763

6567

2188

118

1.60E−06

gp:[GI:g2773363] [LN:AF041382]

[AC:AF041382] [PN:microtubule

binding protein D-CLIP-190]

[OR:

Drosophila melanogaster]

[SR:fruit fly] [DE:

Drosophila

melanogaster

microtubule binding

protein D-CLIP-190mRNA,

complete cds.] [NT:CLIP-170

homolog]

Contig152G

33991443_c2_564

3638

7764

1023

340

539

5.60E−52

sp:[LN:LPXK_HAEIN]

[AC:P44491] [GN:LPXK:HI10059]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:2.7.1.130]

[DE:TETRAACYLDISACCHARI

DE 4′-KINASE, (LIPID A 4′-

KINASE)] [SP:P44491]

Contig152G

34234676_f3_294

3639

7765

1434

477

1519

7.90E−156

sp:[LN:ASPA_PSEFL]

[AC:P07346] [GN:ASPA]

[OR:

PSEUDOMONAS

FLUORESCENS

] [EC:4.3.1.1]

[DE:ASPARTATE AMMONIA-

LYASE, (ASPARTASE)]

[SP:P07346]

Contig152G

34267186_f3_372

3640

7766

387

128

NO-HIT

Contig152G

34381667_c2_636

3641

7767

1578

525

1279

2.10E−130

gp:[GI:g501026] [LN:KPU00985]

[AC:U00985]

[PN:dihydrolipoamide

acetyltransferase] [GN:acoC]

[FN:essential for utilization of

acetoin] [OR:

Klebsiella

pneumoniae

] [DE:

Klebsiella

pneumoniac

CG43 acetoin:DCPIP

oxidoreductase alphasubunit

(acoA), acetoin:DCPIP

oxidoreductase beta subunit

(acoB)and dihydrolipoamide

acetyltransferase (acoC) genes,

cornplete cds.] [NT:putative lipoyl-

binding site]

Contig152G

34406257_f2_203

3642

7768

654

217

NO-HIT

Contig152G

34408518_c2_582

3643

7769

891

296

113

0.00043

sp:[LN YDAU_ECOLI]

[AC:P76065] [GN:YDAU]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 32.5 KD

PROTEIN IN SIEB-TRKG

INTERGENIC REGION]

[SP:P76065]

Contig152G

34413187_f3_416

3644

7770

885

294

NO-HIT

Contig152G

34414677_f2_142

3645

7771

1437

478

612

1.00E−59

sp:[LN:ATOE_ECOLI]

[AC:P76460] [GN:ATOE]

[OR:

ESCHERICHIA COLI

]

[DE:SHORT-CHAIN FATTY

ACIDS TRANSPORTER]

[SP:P76460]

Contig152G

34570250_c2_632

3646

7772

1224

407

1141

9.00E−116

sp:[LN:TRPB_PSEAE]

[AC:P07345] [GN:TRPB]

[OR:

PSEUDOMONAS

AERUGINOSA

] [EC:4.2.1.20]

[DE:TRYPTOPHAN SYNTHASE

BETA CHAIN,] [SP:P07345]

Contig152G

35157652_c2_637

3647

7773

852

283

690

5.60E−68

sp:[LN:BUDC_KLEPN]

[AC:Q48436] [GN:BUDC]

[OR:

KLEBSIELLA

PNEUMONIAE

] [EC:1.1.1.5]

[DE:ACETOIN(DIACETYL)

REDUCTASE, (ACETOIN

DEHYDROGENASE) (AR)]

[SP:Q48436]

Contig152G

35704681_c1_476

3648

7774

261

86

NO-HIT

Contig152G

35941437_c2_624

3649

7775

306

101

NO-HIT

Contig152G

36125443_c3_688

3650

7776

351

116

NO-HIT

Contig152G

37758_c2_665

3651

7777

906

301

480

1.00E−45

sp:[LN:DHBA_BACSU]

[AC:P39071] [GN:DHBA:ENTA]

[OR:

BACILLUS SUBTILIS

]

[EC:1.3.1.28] [DE:(COLD

SHOCK PROTEIN CS114)]

[SP:P39071]

Contig152G

390842_f3_333

3652

7778

258

85

NO-HIT

Contig152G

3912542_c2_598

3653

7779

867

288

365

1.50E−33

pir:[LN:A70330] [AC:A70330]

[PN:CysQ protein] [GN:cysQ]

[OR:

Aquifex aeolicus

]

Contig152G

3922130_f2_199

3654

7780

1002

333

1006

1.80E−101

gp:[GI:e1173486:g2623970]

[LN:A5AJ2316] [AC:AJ002316]

[PN:transcriptional regulator of

XylS /AraC family] [GN:alkR]

[FN:neccssary for growth on

alkanes] [OR:Acinetobacter sp.

ADP1] [DE:Acinetobacter sp.

ADP1 alkR & alkM genes, ORF1

& ORF4.]

Contig152G

3945952_f2_185

3655

7781

2166

721

1104

7.50E−112

sp:[LN FHUE_ECOLI]

[AC:P16869:P77292] [GN:FHUE]

[OR:

ESCHERICHIA COLI

]

[DE:AND FE(III)-

RHODOTRULIC ACID

PRECURSOR]

[SP:P16869:P77292]

Contig152G

3954703_f2_247

3656

7782

384

127

NO-HIT

Contig152G

3960888_c2_622

3657

7783

1128

375

726

8.50E−72

sp:[LN:YBHR_ECOLI]

[AC:P75774] [GN:YBHR]

[OR:ESCHERICHIA COLI]

[DE:HYPOTHETICAL 41.6 KD

PROTEIN IN MOAE−RHLE

INTERGENIC REGION]

[SP:P75774]

Contig152G

397010_c3_780

3658

7784

1449

482

1488

1.50E−152

sp:[LN:YXJC_BACSU]

[AC:P42314] [GN:YXJC:N15J]

[OR:BACILLUS SUBTILIS]

[DE:HYPOTHETICAL 48.3 KD

PROTEIN IN KATB 3′REGION]

[SP:P42314)

Contig152G

39762_f3_319

3659

7785

1002

333

931

1.60E−93

gp:[GI:g146625] [LN:ECOLIPAB]

[AC:L07636] [PN:LIPA protein]

[GN:lipA] [OR:

Escherichia coli

]

[SR:

Escherichia coli

(sub_strain

W3110, strain K-12) (library:

Kohar] [DE:

E.coli

lipoic acid

biosynthesis lipA, lipB, and ORFs

1, 2 and 3genes, complete cds,

dacA gene, 3′end.]

Contig152G

3990638_c3_739

3660

7786

1920

639

153

1.80E−13

gp:[GI:g1755194]

[LN:LPU76559] [AC:U76559]

[PN:FrgA] [GN:frgA]

[OR:

Legionella pneumophila

]

[DE:

Legionella pneumophila

iron

repressed FrgA (frgA) gene,

completecds.] [NT:iron repressed

gene. similar to aerobactin]

Contig152G

3995257_c1_546

3661

7787

360

119

183

3.00E−14

sp:[LN:MODE_ECOLI]

[AC:P46930]

[GN:MODE:MODR]

[OR:

ESCHERICHIA COLI

]

[DE:MOLYBDENUM

TRANSPORT PROTEIN MODE]

[SP:P46930]

Contig152G

400277_c2_638

3662

7788

699

232

576

6.70E−56

pir:[LN:574892] [AC:S74892]

[PN:hypothetical protein slr1259]

[OR:Synechocystis sp.] [SR:PCC

6803, , PCC 6803] [SR:PCC 6803,]

Contig152G

4009828_c2_584

3663

7789

438

145

NO-HIT

Contig152G

4025312_c3_720

3664

7790

669

222

271

1.40E−23

sp:[LN:YRAR_ECOLI]

[AC:P45469] [GN:YRAR]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 24.8 KD

PROTEIN IN AGAI-MTR

INTERGENIC REGION (F226)]

[SP:P45469]

Contig152G

4062668_f1_123

3665

7791

1212

403

1156

2.30E−117

sp:[LN:YGJU_ECOLI]

[AC:P42602] [GN:YGJU]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 43.5 KD

PROTEIN IN EBGC-UXAA

INTERGENIC REGION (O414)]

[SP:P42602]

Contig152G

4064553_c1_515

3666

7792

435

144

NO-HIT

Contig152G

4093758_c3_770

3667

7793

801

266

223

1.70E−18

pir:[LN:574895] [AC:574895]

[PN:hypothetical protein slr1262]

[OR:Synechocystis sp.] [SR:PCC

6803, , PCC 6803] [SR:PCC 6803,]

Contig152G

4094430_f1_120

3668

7794

408

135

341

5.30E−31

pir:[LN:S76180] [AC:S76180]

[PN:hypothetical protein]

[OR:Synechocystis sp.] [SR:PCC

6803, , PCC 6803] [SR:PCC 6803,]

Contig152G

4097203_f2_208

3669

7795

348

115

392

2.10E−36

sp:[LN:FER_PSEAE]

[AC:Q51383] [GN:FDX]

[OR:PSEUDOMONAS

AERUGINOSA]

[DE:FERREDOXIN, 2FE−2S]

[SP:Q51383]

Contig152G

4099143_c2_639

3670

7796

1665

554

945

5.30E−95

pir:[LN:S77262] [AC:S77262]

[PN:hypothetical protein slr0876]

[OR:Synechocystis sp.] [SR:PCC

6803, , PCC 6803] [SR:PCC 6803.]

Contig152G

4120432_c1_503

3671

7797

1455

484

729

4.10E−72

gp:[GI:d1039127:g4514352]

[LN:AB013375] [AC:AB013375]

[PN:YhcA] [GN:yhcA]

[OR:

Bacillus halodurans

]

[SR:

Bacillus halodurans

(strain:C-

125) DNA] [DE:

Bacillus

halodurans

C-125 ydiH, ydiI, ydij,

yhcA and yxaA genes,complete

and partial cds.]

Contig152G

4173515_c2_601

3672

7798

480

159

100

0.00018

pir:[LN:D71092] [AC:D71092]

[PN:hypothetical protein PH1001]

[GN:PH1001] [CL:histidine triad

homology] [OR:

Pyrococcus

horikoshii]

Contig152G

4179677_c1_443

3673

7799

804

267

782

9.90E−78

sp:[LN:YGII_PSEPU]

[AC:P31856]

[OR:

PSEUDOMONAS PUTIDA

]

[DE:HYPOTHETICAL 28.9 KD

PROTEIN IN GIDB-UNCI

INTERGENIC REGION]

[SP:P31856]

Contig152G

426382_c3_751

3674

7800

492

163

NO-HIT

Contig152G

4297818_c1_451

3675

7801

453

150

NO-HIT

Contig152G

4318838_c3_752

3676

7802

600

199

191

4.20E−15

sp:[LN:YIDB_ECOLI]

[AC:P09996:P76738] [GN:YIDB]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 13.8 KD

PROTEIN IN IBPA-GYRB

INTERGENIC REGION]

[SP:P09996:P76738]

Contig152G

4320302_c1_454

3677

7803

390

129

89

0.00084

pir:[LN:S74701] [AC:S74701]

[PN:hypothetical protein sl11191]

[OR:Synechocystis sp.] [SR:PCC

6803, , PCC 6803] [SR:PCC 6803,]

Contig152G

4339052_c3_716

3678

7804

1833

610

160

6.40E−18

pir:[LN:A38447]

[AC:A38447:S15230:G69668]

[PN:oligopeptide ABC transpont

system substrate-binding protein

oppA precursor:oppA

homolog:sporulation initiation

protein spo0KA]

[GN:oppA:spo0KA] [CL:dipeptide

transport protein] [OR:

Bacillus

subtilis

]

Contig152G

4354143_c3_691

3679

7805

837

278

389

4.40E−36

pir:[LN:S71506]

[AC:S71506:S78438] [PN:site-

specific DNA-methyltransferase

(cytosine-specific), BalI]

[GN:BalI] [OR:

Brevibacterium

albidum

] [EC:2.1.1.73]

Contig152G

4398952_c1_475

3680

7806

453

150

NO-HIT

Contig152G

4406503_f3_434

3681

7807

1173

390

844

2.70E−84

sp:[LN:YCFD_HAEIN]

[AC:P44683] [GN:HI0396]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

HI0396] [SP:P44683]

Contig152G

4406625_f2_206

3682

7808

255

84

266

4.70E−23

gp:[GI:g2271523] [LN:AF010139]

[AC:AF010139] [PN:IscA]

[GN;iscA] [OR:

Azotobacter

vinelandii

] [DE:

Azotobacter

vinelandii

iron-sulfur cluster

assembly gene cluster,suhB,

cysE2, iscS, iscU, iscA, hscB,

hscA and fdx genes completecds;

ndk gene, partial cds.]

[NT:hypothetical protein involved

in FeS cluster]

Contig152G

4412893_f3_284

3683

7809

501

166

795

4.20E−79

gp:[GI:g3511233] [LN:AF071556]

[AC:AF071556] [PN:anthranilate

dioxygenase small subunit]

[GN:antB] [OR:Acinetobacter sp.

ADP1] [DE:acinetobacter sp.

ADP1 anthranilate dioxygenase

large subunit(antA), anthranilate

dioxygenase small subunit (antB),

andanthranilate dioxygenase

reductase (antC) genes, complete

cds.] [NT:terminal dioxygenase]

Contig152G

4456393_c2_630

3684

7810

861

286

221

1.70E−29

gp:[GI:g706846] [LN:RSU21071]

[AC:U21071] [PN:unknown]

[OR:

Rhodococcus erythropolis

]

[DE:

Rhodococcus erythropolis

alcohol:N,N′-dimethyl-4-

nitrosoanilineoxidoreductase

(thcE), complete cds.] [NT:ORF1]

Contig152G

4485458_c3_697

3685

7811

1701

566

NO-HIT

Contig152G

4567518_c1_441

3686

7812

702

233

581

2.00E−56

gp:[GI:g4545244] [LN:AF116284]

[AC:AF116284] [PN:unknown]

[OR:

Pseudomonas aeruginosa

]

[DE:

Pseudomonas aeruginosa

DnaJ-like protein gene, complete

cds; and unknown genes.]

[NT:Orf224; similar to mannose-1-

phosphate]

Contig152G

4572142_c3_676

3687

7813

891

296

783

7.80E−78

sp:[LN:YGI2_PSEPU]

[AC:P31857]

[OR:

PSEUDOMONAS PUTIDA

]

[DE:HYPOTHETICAL 32.4 KD

PROTEIN IN GIDB-UNCI

INTERGENIC REGION]

[SP:P31857]

Contig152G

4572762_f2_246

3688

7814

828

275

194

2.00E−15

sp:[LN:PRTR_PSEAE]

[AC:Q06553] [GN:PRTR]

[OR:

PSEUDOMONAS

AERUGINOSA

]

[DE:TRANSCRIPTION

REGULATORY PROTEIN PRTR

(PYOSIN REPRESSOR

PROTEIN)] [SP:Q06553]

Contig152G

4694817_f1_34

3689

7815

1242

413

465

3.90E−44

pir:[LN:574653] [AC:S74653]

[PN:sensory transduction system

regulatory protein sl11673]

[CL:response regulator homology]

[OR:Synechocystis sp.] [SR:PCC

6803, , PCC 6803] [SR:PCC 6803,]

Contig152G

4709562_c2_628

3690

7816

294

97

NO-HIT

Contig152G

4722788_f3_357

3691

7817

1305

434

808

1.70E−80

pir:[LN:D70646] [AC:D70646]

[PN:probable acyl-CoA

dehydrogenase] [GN:fadE24]

[OR:

Mycobacterium tuberculosis

]

Contig152G

4725000_c3_765

3692

7818

996

331

1260

2.20E−128

gp:[GI:g397641] [LN:KPU00985]

[AC:U00985] [PN:acetoin:DCPIP

oxidoreductase alpha subunit]

[GN:acoA] [FN:essential for

utilization of acetoin]

[OR:

Klebsiella pneumoniae

]

[DE:

Klebsiella pneumoniae

CG43

acetoin:DCPIP oxidoreductase

alphasubunit (acoA),

acetoin:DCPIP oxidoreductase beta

subunit (acoB)and

dihydrolipoamide acetyltransferase

(acoC) genes, complete cds.]

[NT:putative thiamine

pyrophosphate binding]

Contig152G

476057_c3_694

3693

7819

552

183

NO-HIT

Contig152G

4784681 _f1_48

3694

7820

354

117

NO-HIT

Contig152G

48588_c1_498

3695

7821

288

95

317

1.90E−28

sp:[LN:DBHB_ECOLI]

[AC:P02341] [GN:HUPB:HOPD]

[OR:

ESCHERICHIA COLI

]

[DE:DNA-BINDING PROTEIN

HU-BETA (NS1) (HU-1)]

[SP:P02341]

Contig152G

4863425_c3_758

3696

7822

423

140

NO-HIT

Contig152G

4875003_c1_479

3697

7823

204

67

NO-HIT

Contig152G

4877293_c3_790

3698

7824

633

210

466

3.00E−44

sp:[LN:MODC_HAEIN]

[AC:P45321]

[GN:MODC:HI1691]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:MOLYBDENUM

TRANSPORT ATP-BINDING

PROTEIN MODC] [SP:P45321]

Contig152G

4881563_c1_509

3699

7825

1065

354

389

3.70E−54

gp:[GI:g3128321] [LN:AF010496]

[AC:AF010496] [PN:nicotinate-

nucleotide--

dimethylbenzimidazole]

[OR:

Rhodobacter capsulatus

]

[EC:2.4.2.21] [DE:

Rhodobacter

capsulatus

strain SB1003, partial

genome.]

Contig152G

4882827_c3_717

3700

7826

2034

677

855

1.80E−85

sp:[LN:MEPD_RAT]

[AC:P24155] [GN:THOP1]

[OR:RATTUS NORVEGICUS]

[EC:3.4.24.15]

[DE:(ENDOPEPTIDASE 24.15)

(PZ-PEPTIDASE) (SOLUBLE

METALLO-ENDOPEPTIDASE)]

[SP:P24155]

Contig152G

4882938_c2_565

3701

7827

771

256

544

1.60E−52

sp:[LN:KDSB_ECOLI]

[AC:P04951] [GN:KDSB]

[OR:

ESCHERICHIA COLI

]

[EC:2.7.7.38]

[DE:SYNTHETASE) (CMP-2-

KETO-3-

DEOXYOCTULOSONIC ACID

SYNTHETASE) (CKS)]

[SP:P04951]

Contig152G

4884382_c1_549

3702

7828

219

72

NO-HIT

Contig152G

4886562_c2_666

3703

7829

657

218

580

2.50E−56

sp:[LN:ENTB_ECOLI]

[AC:P15048] [GN:ENTB:ENTG]

[OR:

ESCHERICHIA COLI

]

[EC:3.3.2.1] [DE:SYNTHASE)]

[SP:P15048]

Contig152G

4892813_c1_526

3704

7830

1014

337

426

5.30E−40

pir:[LN:A64500] [AC:A64500]

[PN:homoserine dehydrogenase,]

[CL:homoserine

dehydrogenase:homoserine

dehydrogenase homology]

[OR:

Methanococcus jannaschii

]

[EC:1.1.1.3] [MP:FOR1574042-

1575052]

Contig152G

4898467_f2_140

3705

7831

891

296

365

1.50E−33

sp:[LN:YBHD_ECOLI]

[AC:P52696:P75761] [GN:YBHD]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL

TRANSCRIPTIONAL

REGULATOR IN MODC-BIOA

INTERGENIC REGION]

[SP:P52696:P75761]

Contig152G

4944068_c1_531

3706

7832

1008

335

175

6.10E−13

pir:[LN:S75919] [AC:S75919]

[PN:hypothetical protein slr1687]

[OR:Synechocystis sp.] [SR:PCC

6803, , PCC 6803] [SR:PCC 6803,]

Contig152G

4955436_c3_674

3707

7833

1074

357

1517

1.30E−155

gp:[GI:e1332422:g3758880]

[LN:PST011927] [AC:AJ011927]

[PN:fructose-1,6-bisphosphate

aldolase] [GN:fda]

[OR:

Pseudomonas stutzeri

]

[DE:

Pseudomonas stutzeri

fda

gene and gene encoding

hypotheticalprotein.] [NT:class II

aldolase]

Contig152G

4956933_c2_659

3708

7834

1023

340

NO-HIT

Contig152G

4960088_c1_552

3709

7835

2085

694

2507

1.60E−260

gp:[GI:e245927:g2462047]

[LN:ACRBDOXN] [AC:Z46863]

[PN:polyphosphate kinase]

[GN:ppk] [OR:Acinetobacter sp.

ADP1] [DE:Acinetobacter sp.

cysD, cobQ, sodM, lysS, rubA,

rubB, estB, oxyR,ppk, mtgA,

ORF2 and ORF3 genes.]

NT:putative; transcription of ppk

is induced by]

Contig152G

4969012_c3_728

3710

7836

1881

626

2256

6.30E−234

gp:[GI:e1173385:g2623969]

[LN:ASAJ2316] [AC:AJ002316]

[PN:putative peptidyl-prolyl cis-

trans isomerase]

[OR:Acinetobacter sp. ADP1]

[DE:Acinetobacter sp. ADP1 alkR

& alkM genes, ORF1 & ORF4.]

[NT:ORF1]

Contig152G

500877_c2_600

3711

7837

978

325

755

7.20E−75

pir:[LN:F70520] [AC:F70520]

[PN:hypothetical protein Rv0799c]

[GN:Rv0799c]

[OR:

Mycobacterium tuberculosis

]

Contig152G

5086582_c1_523

3712

7838

1146

381

1455

4.80E−149

gp:[GI:g397642] [LN:KPU00985]

[AC:U00985] [PN:acetoin:DCPIP

oxidoreductase beta subunit]

[GN:acoB] [FN:essential for

utilization of acetoin]

[OR:

Klebsiella pneumoniae

]

[DE:

Klebsielia pneumoniae

CG43

acetoin:DCPIP oxidoreductase

alphasubunit (acoA),

acetoin:DCPIP oxidoreductase beta

subunit (acoB)and

dihydrolipoamide acetyltransferase

(acoC) genes, complete cds.]

Contig152G

5109375_c3_797

3713

7839

594

197

NO-HIT

Contig152G

5126250_c1_455

3714

7840

708

235

662

5.20E−65

sp:[LN:DCOP_HAEIN]

[AC:P43812] [GN:PYRF:HI1224]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:4.1.1.23]

[DE:DECARBOXYLASE)]

[SP:P43812]

Contig152G

517186_c2_652

3715

7841

192

63

NO-HIT

Contig152G

5188327_c2_588

3716

7842

1023

340

NO-HIT

Contig152G

5197010_c3_740

3717

7843

780

259

173

2.90E−12

gp:[GI:e245969:g1621211]

[LN:BIBIRII] [AC:X98086]

[GN:atr] [OR:

Bacillus

intermedius

] [DE:

B.intermedius

birII, atr, fbiD & fbiC genes.]

Contig152G

5257326_f2_204

3718

7844

1260

419

1509

9.10E−155

gp:[GI:g2271521] [LN:AF010139]

[AC:AF010139] [PN:IscS]

[GN:iscS] [OR:

Azotobacter

vinelandii

] [DE:

Azotobacter

vinelandii

iron-sulfur cluster

assembly gene cluster,suhB,

cysE2, iscS, iscU, iscA, hscB,

hscA and fdx genes completecds;

ndk gene, partial cds.]

[NT:pyridoxal phosphate-

dependent L-cysteine]

Contig152G

5282890_c1_492

3719

7845

366

121

NO-HIT

Contig152G

553462_f1_47

3720

7846

687

228

127

8.40E−08

pir:[LN:PC2359] [AC:PC2359]

[PN:Na+/H+ antiporter.

hypothetical 175 protein]

[OR:

Vibrio parahaemolyticus

]

Contig152G

5869031_c2_631

3721

7847

1191

396

NO-HIT

Contig152G

5976502_c3_745

3722

7848

660

219

NO-HIT

Contig152G

6070325_f2_180

3723

7849

894

297

NO-HIT

Contig152G

631882_f3_433

3724

7850

663

220

394

1.30E−36

sp:[LN:YCEF_ECOLI]

[AC:P27244] [GN:YCEF]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 23.2 KD

PROTEIN IN RNE-RPMF

INTERGENIC REGION (ORFY)]

[SP:P27244]

Contig152G

6445327_c3_755

3725

7851

375

124

NO-HIT

Contig152G

6515_f3_381

3726

7852

186

61

NO-HIT

Contig152G

6650937_f1_102

3727

7853

1560

519

1078

4.30E−109

pir:[LN:D70861] [AC:D70861]

[PN:probable monoxygenase]

[GN:Rv3049c]

[OR:

Mycobacterium tuberculosis

]

Contig152G

6726568_c2_626

3728

7854

606

201

529

6.40E−51

sp:[LN:RECR_ECOLI]

[AC:P12727] [GN:RECR]

[OR:

ESCHERICHIA COLI

]

[DE:RECOMBINATION

PROTEIN RECR] [SP:P12727]

Contig152G

6758438_c2_566

3729

7855

783

260

593

1.10E−57

sp:[LN:YCFH_ECOLI]

[AC:P37346:P78057] [GN:YCFH]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 29.8 KD

PROTEIN IN HOLB-PTSG

INTERGENIC REGION]

[SP:P37346:P78057]

Contig152G

6926317_c2_625

3730

7856

348

115

266

4.70E−23

sp:[LN:YBAB_HAEIN]

[AC:P44711] [GN:HI0442]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

HI0442] [SP:P44711]

Contig152G

7074062_c2_623

3731

7857

216

71

74

0.00044

pir:[LN:S60892] [AC:S60892]

[PN:nucleosome assembly protein

1] [OR:Glycine max] [SR:,

soybean]

Contig152G

7267811_f1_97

3732

7858

357

118

NO-HIT

Contig152G

7277142_c1_489

3733

7859

1155

384

413

1.40E−44

pir:[LN:S16649]

[AC:S16649:S18271:E69618:1400

01] [PN:dipeptide ABC transporter

(permease):dciAC protein]

[GN:dppC:dciAC]

[CL:oligopeptide permease protein

oppB] [OR:

Bacillus subtilis

]

Contig152G

7290918_c1_512

3734

7860

1149

382

638

1.80E−62

sp:[LN:YBHS_ECOLI]

[AC:P75775] [GN:YBHS]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 42.1 KD

PROTEIN IN MOAE-RHLE

INTERGENIC REGION]

[SP:P75775]

Contig152G

870902_f3_383

3735

7861

510

169

255

6.90E−22

gp:[GI:g3916255] [LN:AF087669]

[AC:AF087669] [PN:ExbD]

[GN:exbD] [OR:

Bordetella

bronchiseptica

] [DE:

Bordetella

bronchiseptica

TonB (tonB), ExbB

(exbB), and ExbD (exbD)genes,

complete cds.]

Contig152G

954051_c3_743

3736

7862

564

187

333

3.80E−30

gp:[GI:g4151934] [LN:AF110737]

[AC:AF110737] [PN:RhsD]

[GN:rhsD] [FN:siderophore

biosynthesis] [OR:

Sinorhizobium

meliloti

] [DE:

Rhizobium melitoti

strain 2011 rhizobactin regulon,

completesequence.] [NT:similar to

lucB]

Contig152G

964502_c2_576

3737

7863

1086

361

209

9.10E−15

pir:[LN:B70990] [AC:B70990]

[PN:probable transcription

activator protein] [GN:Rv1395]

[OR:

Mycobacterium tuberculosis

]

Contig152G

976563_f2_139

3738

7864

399

132

NO-HIT

Contig152G

977302_c3_762

3739

7865

768

255

107

0.00075

sp:[LN:Y358_HAEIN]

[AC:P44659] [GN:H10358]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

H10358] [SP:P44659]

Contig152G

984375_c1_510

3740

7866

843

280

298

1.90E−26

sp:[LN:COBS_SALTY]

[AC:Q05602] [GN:COBS]

[OR:

SALMONELLA

TYPHIMURIUM

]

[DE:COBALAMIN [5′-

PHOSPHATE]SYNTHASE]

[SP:Q05602]

Contig152G

989757_f3_356

3741

7867

315

104

NO-HIT

Contig152G

9929577_c2_591

3742

7868

2016

671

NO-HIT

Contig154G

100442_f3_625

3743

7869

1359

452

817

1.90E−81

gp:[GI:d1032414:g3298336]

[LN:AB010463] [AC:AB010463]

[PN:NorM] [GN:norM]

[OR:

Vibrio parahaemolyticus

]

[SR:

Vibrio parahaemolyticus

(strain:AQ3334) DNA]

[DE:

Vibrio parahaemolyticus

gene

for NorM, complete cds.]

Contig154G

10049217_c2_936

3744

7870

393

130

281

1.20E−24

sp:[LN:CRCB_ECOLI]

[AC:P37002] [GN:CRCB]

[OR:

ESCHERICHIA COLI

]

[DE:CRCB PROTEIN]

[SP:P37002]

Contig154G

10157130_c1_703

3745

7871

702

233

421

1.80E−39

sp:[LN:PGSA_HAEIN]

[AC:P44528] [GN:PGSA:H10123]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:2.7.8.5]

[DE:(EC 2.7.8.5)

(PHOSPHATIDYLGLYCEROPH

OSPHATE SYNTHASE) (PGP

SYNTHASE)] [SP:P44528]

Contig154G

103207_f2_345

3746

7872

1755

584

1107

1.90E−151

sp:[LN:LEU1_CORGL]

[AC:P42455] [GN:LEUA]

[OR:

CORYNEBACTERIUM

GLUTAMICUM

] [EC:4.1.3.12]

[DE:SYNTHASE) (ALPHA-IPM

SYNTHETASE)] [SP:P42455]

Contig154G

10337768_c2_898

3747

7873

333

110

242

1.70E−20

sp:[LN:SECG_ECOLI]

[AC:P33582] [GN:SECG]

[OR:

ESCHERICHIA COLI

]

[DE:SUBUNIT) (P12)]

[SP:P33582]

Contig154G

10353418_c2_911

3748

7874

3702

1233

779

1.20E−87

sp:[LN:EX5B_HAEIN]

[AC:P45157] [GN:RECB:H11321]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:31.11.5]

[DE:EXODEOXYRIBONUCLEA

SE V BETA CHAIN,]

[SP:P45157]

Contig154G

10428160_f2_405

3749

7875

261

86

NO-HIT

Contig154G

1049050_c2_865

3750

7876

561

186

589

2.80E−57

sp:[LN:NUSG_ECOLI]

[AC:P16921] [GN:NUSG]

[OR:

ESCHERICHIA COLI

]

[DE:TRANSCRIPTION

ANTITERMINATION PROTEIN

NUSG] [SP:P16921]

Contig154G

1054677_c1_723

3751

7877

1443

480

552

2.30E−53

pir:[LN:577243] [AC:577243]

[PN:hypothetical protein slr1363]

[OR:Synechocystis sp.] [SR:PCC

6803,, PCC 6803] [SR:PCC 6803,]

Contig154G

10554702_c1_713

3752

7878

525

174

243

4.20E−32

gp:[GI:g1835603] [LN:PSU85643]

[AC:U85643] [PN:15 kDa protein]

[OR:

Pseudomonas syringae

pv.

syringae] [DE:

Pseudomonas

syringae

pv. syringae putative

dihydropteroate synthasegene,

partial cds, regulatory protein

MrsA (mrsA), triose

phosphateisomerasc (tpiA),

transport protein SecG (secG),

tRNA-Leu,tRNA-Met, and 15 kDa

protein genes, complete cds.]

Contig154G

10728325_c2_1038

3753

7879

1083

360

1117

3.10E−113

pir:[LN:E69220] [AC:F69220]

[PN:conserved hypothetical

protein MTH900] [GN:MTH900]

[CL:conserved hypothetical

protein MTH900]

[OR:

Methanobacterium

thermoautotrophicum

]

Contig154G

110452_f1_217

3754

7880

1173

390

1309

1.40E−133

sp:[LN:THIK_PSEFR]

[AC:P28790] [GN:FAOB]

[OR:

PSEUDOMONAS FRAGI

]

[EC:2.3.1.16] [DE:SUBUNIT)

(BETA-KETOTHIOLASE)

(ACETYL-COA

ACYLTRANSFERASE)]

[SP:P28790]

Contig154G

11087_f2_357

3755

7881

1722

573

1223

1.80E−124

sp:[LN:YBAL_ECOLI]

[AC:P39830:P52068:P77724]

[GN:YBAL] [OR:

ESCHERICHIA

COLI

] [DE:HYPOTHETICAL

59.4 KD PROTEIN IN GSK-FSR

INTERGENIC REGION]

[SP:P39830:P52068:P77724]

Contig154G

11125055_f3_601

3756

7882

1947

648

1658

1.50E−170

sp:[LN:UUPI_HAEIN]

[AC:Q57242:O05056] [GN:UUP-

A:H11300] [OR:

HAEMOPHILUS

INFLUENZAE

] [DE:ABC

TRANSPORTER ATP-BINDING

PROTEIN UUP-1]

[SP:Q57242:O05056]

Contig154G

11136305_c2_1010

3757

7883

486

161

NO-HIT

Contig154G

11140910_f3_631

3758

7884

864

287

536

1.20E−51

sp:[LN:YBEX_ECOLI]

[AC:P77392] [GN:YBEX]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 33.3 KD

PROTEIN IN CUTE-ASNB

INTERGENIC REGION]

[SP:P77392]

Contig154G

11745958_c1_689

3759

7885

4224

1407

5117

0

sp:[LN:RPOC_ECOLI]

[AC:P00577:P00578:P78134]

[GN:RPOC:TABB]

[OR:

ESCHERICHIA COLI

]

[EC:2.7.7.6] [DE:BETA′CHAIN)

(RNA POLYMERASE BETA′

SUBUNIT)]

[SP:P00577:P00578:P78134]

Contig154G

11803192_f2_254

3760

7886

381

126

520

5.80E−50

gp:[GI:g144989] [LN:CORTC2]

[AC:J02801]

[OR:

Corynebacterium nephridii

]

[SR:

C.nephridii

DNA, clone

JF510/pLCN41]

[DE:

Corynebacterium nephridii

thioredoxin C-2 gene.]

[NT:thioredoxin C-2]

Contig154G

11914177_f2_367

3761

7887

1158

385

130

7.00E−05

pir:[LN:S49313]

[AC:S52076:S49313] [PN:protein

kinase] [CL:unassigned Ser/Thr or

Tyr-specific protein

kinases:protein kinase homotogy]

[OR:Dictyostelium discoideum]

Contig154G

1193756_f1_91

3762

7888

348

115

NO-HIT

Contig154G

120218_c1_801

3763

7889

810

269

250

2.40E−21

pir:[LN:JC5302] [AC:JC5302]

[PN:PilF protein] [GN:pilF]

[CL:hypothetical protein

H10366:tetratricopeptide repeat

homology] [OR:

Pseudomonas

aeruginosa

]

Contig154G

1212908_f3_650

3764

7890

1818

605

739

1.00E−84

gp:[GI:g3128270] [LN:AF010496]

[AC:AF010496] [PN:potential

poly(3-hydroxyalkanoate)

polymerase] [OR:

Rhodobacter

capsulatus

] [EC:2.3.1.—]

[DE:

Rhodobacter capsulatus

strain

SB1003, partial genome.]

Contig154G

1226012_c1_853

3765

7891

1029

342

1102

1.20E−111

gp:[GI:d1016204:g1742794]

[LN:D90813]

[AC:D90813:AB001340]

[PN:Phenylatanine--tRNA ligase

(EC 6.1.1.20)a] [GN:pheS]

[OR:

Escherichia coli

]

[SR:

Escherichia coli

(strain:K12)

DNA, clone_lib:Kohara lambda

minise] [DE:

E.coli

genomic DNA,

Kohara clone #322(38.4-38.8

min.).] [NT:ORF_ID:o322#15;

similar to [PIR Accession Number]

Contig154G

12352167_f2_392

3766

7892

1602

533

891

2.80E−89

gp:[GI:g4033729] [LN:AF038595]

[AC:AF038595]

[PN:apolipoprotein N-

acyltransferase] [GN:cutE]

[FN:confers temperature resistance

and copper] [OR:

Pseudomonas

aeruginosa

] [DE:

Pseudomonas

aeruginosa

apolipoprotein N-

acyltransferase (cutE)gene,

complete cds.] [NT:third enzyme

in lipoprotein modification

pathway]

Contig154G

12381563_c3_1215

3767

7893

1143

380

355

1.80E−32

pir:[LN:E69725] [AC:E69725]

[PN:potassium uptake trkA]

[GN:trkA] [OR:

Bacillus subtilis

]

Contig154G

12678801_f1_187

3768

7894

735

244

NO-HIT

Contig154G

12688452_c1_762

3769

7895

246

81

96

4.90E−05

sp:[LN:SLYX_HAEIN]

[AC:P44759] [GN:SLYX:H10573]

[OR:

HAEMOPHILUS

INFLUENZAE

] [DE:SLYX

PROTEIN HOMOLOG]

[SP:P44759]

Contig154G

12689176_f1_126

3770

7896

567

188

425

6.70E−40

pir:[LN:S74472] [AC:S74472]

[PN:protein-methionine-S-oxide

reductase,:peptide methionine

sulfoxide reductase msrA:protein

s111394:peptide methionine

sulfoxide reductase msrA:protein

st11394] [GN:msrA] [CL:peptide

methionine sulfoxide reductase]

[OR:Synechocystis sp.] [SR:PCC

6803, PCC 6803] [SR:PCC 6803,]

[EC:1.8.4.6]

Contig154G

12750007_f1_82

3771

7897

1359

452

610

6.00E−66

pir:[LN:F64826] [AC:F64826]

[PN:probable membrane protein

b0878] [OR:

Escherichia coli

]

Contig154G

1302250_f2_438

3772

7898

1689

562

942

1.10E−94

sp:[LN:RECN_ECOLI]

[AC:P05824:P76602]

[GN:RECN:RADB]

[OR:

ESCHERICHIA COLI

]

[DE:DNA REPAIR PROTEIN

RECN (RECOMBINATION

PROTEIN N)]

[SP:P05824:P76602]

Contig154G

1308505_f3_586

3773

7899

450

149

NO-HIT

Contig154G

13096050_f3_648

3774

7900

1395

464

225

9.30E−16

pir:[LN:528007]

[AC:S28007:S22964]

[PN:probable ATP-binding

protein] [OR:

Escherichia coli

]

Contig154G

13129760_f2_356

3775

7901

285

94

296

3.10E−26

pir:[LN:E64104] [AC:E64104]

[PN:ribosomal protein L28]

[CL:

Escherichia coli

ribosomal

protein L28] [OR:

Haemophilus

influenzae

]

Contig154G

1359390_c3_1185

3776

7902

768

255

333

3.80E−30

gp:[GI:g1110441]

[LN:STMBLDA] [AC:M80628]

[OR:

Streptomyces griseus]

[DE:

Streptomyces griseus

transfer

RNA-Leu (bldA) gene and ORF,

completecds.] [NT:hypothetical

product]

Contig154G

13675051_f3_570

3777

7903

210

69

NO-HIT

Contig154G

13710805_f2_382

3778

7904

819

272

351

4.70E−32

gp:[GI:g4210942] [LN:AF069518]

[AC:AF069518] [PN:17beta-

hydroxysteroid dehydrogenase]

[FN:catalyzes NADPH dependent

reduction of] [OR:

Cochliobolus

lunatus

] [DE:

Cochliobolus lunatus

17beta-hydroxysteroid

dehydrogenase mRNA,complete

cds.] [NT:short chain alcohol

dehydrogenase/reductase family]

Contig154G

13712662_c3_1166

3779

7905

1695

564

564

1.30E−54

sp:[LN:GAPN_STRMU]

[AC:Q59931] [GN:GAPN]

[OR:

STREPTOCOCCUS

MUTANS

] [EC:1.2.1.9]

[DE:DEHYDROGENASE)]

[SP:Q59931]

Contig154G

1376410_c3_1177

3780

7906

1137

378

1209

5.60E−123

gp:[GI:g1531668] [LN:PSU67933]

[AC:U67933] [PN:AarC] [GNrC]

[OR:

Providencia stuartii

]

[DE:

Providencia stuartii

AarC rC)

gene, complete cds.] [NT:similar to

E. coli

GcpE protein encoded by

GenBank]

Contig154G

1376437_c1_845

3781

7907

2337

778

1411

2.20E−144

sp:[LN:RELA_ECOLI]

[AC:P11585] [GN:RELA]

[OR:

ESCHERICHIA COLI

]

[EC:2.7.6.5] [DE:(PPGPP

SYNTHETASE I)] [SP:P11585]

Contig154G

13792812_f1_1

3782

7908

990

329

197

2.40E−13

pir:[LN:G70038] [AC:G70038]

[PN:conserved hypothetical

protein yvfP] [[GN:yvfP]

[OR:

Bacillus subtilis

]

Contig154G

1384662_f3_482

3783

7909

1647

548

1256

5.90E−128

gp:[GI:e308446:g1903034]

[LN:BNACSF8] [AC:X94625]

[PN:amp-binding protein]

[OR:

Brassica napus

]

[DE:

B.napus

mRNA for amp-

binding protein.]

Contig154G

14062586_f2_263

3784

7910

1107

368

NO-HIT

Contig154G

14220258_c2_1039

3785

7911

861

286

NO-HIT

Contig154G

14455375_c1_737

3786

7912

933

310

516

1.50E−49

pir:[LN:S47741]

[AC:S47741:D65150]

[PN:hypothetical transcription

regulator treF-kdgK intergenic

region:hypothetical protein o323]

[GN:yhjC] [OR:

Escherichia coli

]

Contig154G

14573388_c3_1238

3787

7913

582

193

223

1.70E−18

sp:[LN:YGGT_HAEIN]

[AC:P44097] [GN:H11036]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

H11036] [SP:P44097]

Contig154G

14632937_f2_420

3788

7914

1326

441

198

4.40E−13

gp:[GI:g2271503] [LN:AF009672]

[AC:AF009672] [PN:unknown]

[OR:Acinetobacter sp. ADPI]

[DE:Acinetobacter sp. ADPI

vanillate demethylase region,

vanillate demethylase (vanB) and

vanillate demethylase (vanA)

genes, completecds.] [NT:similar

to salicylate hydroxylase; ORF7]

Contig154G

14648342_f2_364

3789

7915

1113

370

437

3.60E−41

pir:[LN:B71691] [AC:B71691]

[PN:capm protein (capM1) RP344]

[GN:capM1:RP344]

[OR:

Rickettsia prowazekii

]

Contig154G

14650275_c1_849

3790

7916

852

283

653

4.60E−64

pir:[LN:G70482] [AC:G70482]

[PN:pantothenate synthetase]

[GN:panC] [CL:pantoate--beta-

alanine ligase] [OR:

Aquifex

aeolicus

]

Contig154G

14720012_c3_1085

3791

7917

1344

447

NO-HIT

Contig154G

14730262_c3_1173

3792

7918

564

187

153

1.80E−10

gp:[GI:g1049369]

[LN:CELT13C5] [AC:U39648]

[GN:T13C5.6]

[OR:

Caenorhabditis elegans

]

[SR:

Caenorhabditis elegans

strain=Bristol N2]

[DE:

Caenorhabditis elegans

cosmid T13C5.]

Contig154G

14851562_f2_455

3793

7919

513

170

NO-HIT

Contig154G

14875658_f2_397

3794

7920

2235

744

1552

2.50E−159

pir:[LN:A35505]

[AC:S40878:A35505:A35506:B65

200] [PN:primosomal replication

factor Y:protein n′] [GN:priA]

[CL:unassigned DEAD/H box

helicases:DEAD/H box helicase

homology] [OR:

Escherichia coli

]

[MP:88.5 min]

Contig154G

14881250_f1_527

3795

7921

1023

340

911

2.10E−91

sp:[LN:Y926_SYNY3]

[AC:P72872] [GN:SLL0926]

[OR:SYNECHOCYSTIS SP]

[SR:PCC 6803,]

[DE:HYPOTHETICAL 37.9 KD

PROTEIN SLL0926] [SP:P72872]

Contig154G

15020636_c3_1198

3796

7922

2784

927

1711

0

sp:[LN:ACON_LEGPN]

[AC:P37032] [GN:ACN]

[OR:

LEGIONELLA

PNEUMOPHILA

] [EC:4.2.1.3]

[DE:(MAJOR IRON-

CONTAINING PROTEIN)

(MICP) (IP210)] [SP:P37032]

Contig154G

15053438_c1_735

3797

7923

1269

422

498

1.20E−47

sp:[LN:SOXC_RHOSO]

[AC:P54998] [GN:SOXC:DSZC]

[OR:RHODOCOCCUS SP]

[DE:DIBENZOTHIOPHENE

DESULFURIZATION ENZYME

C (DBT SULFUR

DIOXYGENASE)] [SP:P54998]

Contig154G

15634837_f3_572

3798

7924

696

231

646

2.60E−63

gp:[GI:g2981041] [LN:AF051690]

[AC:AF051690] [PN:iron-uptake

factor] [GN:piuC]

[OR:

Pseudomonas aeruginosa

]

[DE:

Pseudomonas aeruginosa

iron-

uptake factor (piuC), hydroxamate-

typeferrisiderophore receptor

(piuA), and iron-uptake factor

(piuB)genes, complete cds.]

[NT:PiuC]

Contig154G

15675917_c3_1125

3799

7925

729

242

170

7.10E−13

sp:[LN:GPHC_ALCEU]

[AC:P40852] [GN:CBBZC]

[OR:

ALCALIGENES

EUTROPHUS

] [EC:3.1.3.18]

[DE:PHOSPHOGLYCOLATE

PHOSPHATASE,

CHROMOSOMAL, (PGP)]

[SP:P40852]

Contig154G

157500_c2_1031

3800

7926

393

130

132

7.50E−09

gp:[GI:g4206628] [LN:AF067954]

[AC:AF067954] [PN:unknown]

[GN:ORF96] [OR:

Salmonella

typhimurium] [DE:

Salmonella

typhimurium

plasmid pMG101

silver binding proteinprecursor

SilE (silE), silRS operon,

silC(ORF96)BA(ORF105)P

operon,complete sequence; and

ORF191 gene, partial cds.]

[NT:similar to

Escherichia coli

ORF110, ylcC.]

Contig154G

157567_f1_172

3801

7927

324

107

NO-HIT

Contig154G

15782282_c3_1109

3802

7928

696

231

376

1.00E−34

sp:[LN:GSPG_PSEAE]

[AC:Q00514] [GN:XCPT:PDDA]

[OR:

PSEUDOMONAS

AERUGINOSA

] [DE:PDDA)]

[SP:Q00514]

Contig154G

15812518_c3_1181

3803

7929

702

233

204

1.80E−16

sp:[LN:GSP_BACBR]

[AC:P40683] [GN:GSP]

[OR:

BACILLUS BREVIS

]

[DE:GSP PROTEIN] [SP:P40683]

Contig154G

15820300_f3_555

3804

7930

1278

425

1043

2.20E−105

pir:[LN:C70392] [AC:C70392]

[PN:gamma-glutamyl phosphate

reductase] [GN:proA]

[CL:glutamate-5-semialdehyde

dehydrogenase] [OR:

Aquifex

aeolicus

]

Contig154G

159437_c3_1112

3805

7931

282

93

177

1.30E−13

sp:[LN:YHHP_ECOLI]

[AC:P37618] [GN:YHHP]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 9.1 KD

PROTEIN IN FTSY-NIKA

INTERGENIC REGION]

[SP:P37618]

Contig154G

161392_f2_346

3806

7932

615

204

184

5.40E−14

sp:[LN:YBEQ_ECOLI]

[AC:P77234] [GN:YBEQ]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 37.3 KD

PROTEIN IN LEUS-GLTL

INTERGENIC REGION]

[SP:P77234]

Contig154G

16454686_f3_551

3807

7933

1086

361

726

8.50E−72

sp:[LN:YCFO_ECOLI]

[AC:P75949] [GN:YCFO]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 37.6 KD

PROTEIN IN FHUE-NDH

INTERGENIC REGION]

[SP:P75949]

Contig154G

16507258_f1_235

3808

7934

369

122

147

1.90E−10

pir:[LN:546966] [AC:546966]

[PN:microfilarial sheath protein]

[OR:

Litomosoides carinii

]

Contig154G

16520662_c1_771

3809

7935

441

146

272

1.10E−23

gp:[GI:g3916255] [LN:AF087669]

[AC:AF087669] [PN:ExbD]

[GN:exbD] [OR:

Bordetella

bronchiseptica

] [DE:

Bordetella

bronchiseptica

TonB (tonB), ExbB

(exbB), and ExbD (exbD)genes,

complete cds.]

Contig154G

16695138_f1_124

3810

7936

834

277

757

4.40E−75

gp:[GI:e1296740:g3201564]

[LN:VCH6514] [AC:AJ006514]

[PN:prolipoprotein diacylglyceryl

transferase] [GN:lgt] [OR:

Vibrio

cholerae

] [DE:

Vibrio cholerae

lgt

and thyA genes.]

Contig154G

16828412_f1_173

3811

7937

963

320

295

1.10E−52

sp:[LN:DNAJ_LACLA]

[AC:P35514] [GN:DNAJ]

[OR:

LACTOCOCCUS LACTIS

]

[SR:,SUBSPLACTIS:STREPTOC

OCCUS LACTIS] [DE:DNAJ

PROTEIN] [SP:P35514]

Contig154G

16831538_f1_211

3812

7938

780

259

144

4.20E−08

sp:[LN:YAGI_ECOLI]

[AC:P77300] [GN:YAGI]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL

TRANSCRIPTIONAL

REGULATOR IN PERR-ARGF

INTERGENIC REGION]

[SP:P77300]

Contig154G

191458_c2_1000

3813

7939

182

393

370

4.50E−34

sp:[LN:YFGL_ECOLI]

[AC:P77774] [GN:YFGL]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 41.9 KD

PROTEIN IN XSEA-HISS

INTERGENIC REGION]

[SP:P77774]

Contig154G

19531451_f3_607

3814

7940

996

331

216

3.90E−16

sp:[LN:ASPG_BACSU]

[AC:P26900] [GN:ANSA]

[OR:

BACILLUS SUBTILIS

]

[EC:3.5.1.1] [DE:L-

ASPARAGINASE, (L-

ASPARAGINE

AMIDOHYDROLASE)]

[SP:P26900]

Contig154G

195325_c3_1178

3815

7941

747

248

217

7.40E−18

sp:[LN:GC_NEIGO]

[AC:O87406] [GN:GC]

[OR:

NEISSERIA

GONORRHOEAE

] [DE:GC

PROTEIN] [SP:O87406]

Contig154G

195387_f2_421

3816

7942

2889

962

1727

7.20E−178

gp:[GI:g3128268] [LN:AF010496]

[AC:AF010496] [PN:NADH-

quinone oxidoreductase chain 5]

[OR:

Rhodobacter capsulatus

]

[EC:1.6.5.3] [DE:

Rhodobacter

capsulatus

strain SB1003, partial

genome.]

Contig154G

19553175_c2_1024

3817

7943

360

119

NO-HIT

Contig154G

19555303_f1_188

3818

7944

1632

543

980

1.00E−98

sp:[LN:AARF_ECOLI]

[AC:P27854:P27855:P76764:P278

53] [GN:AARF]

[OR:

ESCHERICHIA COLI

]

[DE:UBIQUINONE

BIOSYNTHESIS PROTEIN

AARF]

[SP:P27854:P27855:P76764:P278

53]

Contig154G

19610632_c2_958

3819

7945

426

141

NO-HIT

Contig154G

19652042_c1_848

3820

7946

855

284

751

1.90E−74

gp:[GI:e1358024:g3970812]

[LN:PFL130846] [AC:AJ130846]

[PN:3-methyl-2-oxobutanoate]

[GN:panB] [FN:pantothenate

biosynthesis] [OR:

Pseudomonas

fluorescens] [EC:2.1.2.11]

[DE:

Pseudomonas fluorescens

folK (partial), panB and panC

(partial)genes.]

Contig154G

19771953_f2_385

3821

7947

306

101

259

2.60E−22

gp:[GI:g1657496]

[LN:ECU73857] [AC:U73857]

[OR:

Escherichia coli

]

[DE:

Escherichia coli

chromosome

minutes 6-8.] [NT:hypothetical

protein]

Contig154G

19944657_f2_255

3822

7948

1302

433

1783

8.40E−184

sp:[LN:RHO_PSEFL]

[AC:P52155] [GN:RHO]

[OR:

PSEUDOMONAS

FLUORESCENS

]

[DE:TRANSCRIPTION

TERMINATION FACTOR RHO]

[SP:P52155]

Contig154G

20022643_f2_449

3823

7949

381

126

158

6.10E−11

pir:[LN:S77011] [AC:S77011]

[PN:mercuric resistance operon

regulatory protein merR-1:protein

s110794:protein s110794]

[GN:merR_1] [OR:Synechocystis

sp.] [SR:PCC 6803,,PCC 6803]

[SR:PCC 6803,]

Contig154G

20085430_c3_1230

3824

7950

285

94

193

2.60E−15

sp:[LN:RL35_PSESY]

[AC:P52830] [GN:RPMI]

[OR:

PSEUDOMONAS

SYRINGAE

] [DE:50S

RIBOSOMAL PROTEIN L35]

[SP:P52830]

Contig154G

20102177_f1_204

3825

7951

1260

419

1294

5.50E−132

sp:[LN:PILC_PSEAE]

[AC:P22609] [GN:PILC]

[OR:

PSEUDOMONAS

AERUGINOSA

] [DE:FIMBRIAL

ASSEMBLY PROTEIN PILC]

[SP:P22609]

Contig154G

2011056_c2_931

3826

7952

657

218

595

6.50E−58

sp:[LN:YCBL_ECOLI]

[AC:P75849] [GN:YCBL]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 23.8 KD

PROTEIN IN MUKB-ASPC

INTERGENIC REGION]

[SP:P75849]

Contig154G

20211551_f1_69

3827

7953

291

96

NO-HIT

Contig154G

20313536_f1_142

3828

7954

321

106

92

0.00033

sp:[LN:GRPE_METMA]

[AC:P42367] [GN:GRPE]

[OR:

METHANOSARCINA

MAZEI

] [DE:GRPE PROTEIN

HOMOLOG] [SP:P42367]

Contig154G

20336563_c1_811

3829

7955

1647

548

786

5.00E−83

pir[LN:A69861] [AC:A69861]

[PN:conserved hypothetical

protein ykoW] [GN:ykoW]

[OR:

Bacillus subtilis

]

Contig154G

20363542_c1_820

3830

7956

732

243

NO-HIT

Contig154G

204755_c1_827

3831

7957

1389

462

179

9.00E−11

pir:[LN:JC4698] [AC:JC4698]

[PN:divalent cation resistant

determinant protein C] [GN:czcC]

[OR:Alcaligenes sp.]

Contig154G

20705216_c2_866

3832

7958

456

151

531

3.90E−51

gp:[GI:g42814] [LN:ECRPOBC]

[AC:V00339:J01678:K00449]

[GN:rplK (L11)] [OR:

Escherichia

coli

] [DE:

E. coli

operon rpoBC

coding for the beta- and beta′-

subunits of RNApolymerase

(genes rpoC and rpoB), and genes

rplL, rlpJ, rplA, andrplK coding

for 50S ribosomal subunit proteins

L7/L12, L10, L1, andL11,

respectively. (Map position 89-90

min.).] [SP:P02409]

Contig154G

20791075_f1_83

3833

7959

1494

497

510

6.60E−49

sp:[LN:YE62_HAEIN]

[AC:P45217] [GN:H11462]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

H11462] [SP:P45217]

Contig154G

2146892_c2_997

3834

7960

462

153

530

5.00E−51

sp:[LN:NKD_PSEAE]

[AC:Q59636] [GN:NDK]

[OR:

PSEUDOMONAS

AERUGINOSA

] [EC:2.7.4.6]

[DE:NUCLEOSIDE

DISPHOSPHATE KINASE, (NKD)

(NDP KINASE)] [SP:Q59636]

Contig154G

214527_f1_169

3835

7961

270

89

NO-HIT

Contig154G

21493817_f1_43

3836

7962

1842

613

1488

1.50E−152

gp:[GI:g3128348] [LN:AF010496]

[AC:AF010496] [PN:ferrous iron

transport protein b]

[OR:

Rhodobacter capsulatus

]

[DE:

Rhodobacter capsulatus

strain

SB1003, partial genome.]

Contig154G

21603462_f1_56

3837

7963

1380

459

777

3.40E−77

pir:[LN:S52258]

[AC:S70165S:S52258] [PN:copper

resistance sensor kinase

pcoS:copper sensor] [GN:pcoS]

[OR:

Escherichia coli

]

Contig154G

21642183_f1_14

3838

7964

1278

425

362

3.20E−33

gp:[GI:e1292364:g3127848]

[LN:SC1A6] [AC:AL023496]

[PN:hypothetical protein]

[OR:

Streptomyces coelicolor

]

[DE:

Streptomyces coelicolor

cosmid 1A6.] [NT:SC1A6.16,

probable transmembrane protein,

len: 431]

Contig154G

21679062_c3_1134

3839

7965

1152

383

NO-HIT

Contig154G

21683382_c2_944

3840

7966

639

212

186

1.40E−14

pir:[LN:JC5114] [AC:J5114]

[PN:glutathione

transferase,:glutathione S-

transferase] [GN:gst] [CL:plaice

gluathione transferase]

[OR:Coccomyxa sp.]

[EC:2.5.1.18]

Contig154G

21908577_c2_910

3841

7967

3636

1211

593

1.90E−55

sp:[LN:EX5C_ECOLI]

[AC:P07648] [GN:RECC]

[OR:

ESCHERICHIA COLI

]

[EC:3.1.11.5] [DE:V GAMMA

CHAIN)] [SP:P07648]

Contig154G

21911386_f1_88

3842

7968

486

161

360

5.20E−33

sp:[LN:SECB_ECOLI]

[AC:P15040] [GN:SECB]

[OR:

ESCHERICHIA COLI

]

[DE:PROTEIN-EXPORT

PROTEIN SECB] [SP:P15040]

Contig154G

2191501_f1_129

3843

7969

186

61

NO-HIT

Contig154G

22143941_f3_630

3844

7970

1869

622

2837

1.70E−295

sp:[LN:ETFD_ACICA]

[AC:P94132]

[OR:

ACINETOBACTER

CALOACETICUS

] [EC:1.5.5.1]

[DE:DEHYDROGENASE)

(ELECTRON-TRANSFERRING-

FLAVOPROTEIN

DEHYDROGENASE)]

[SP:P94132]

Contig154G

22145462_c2_1047

3845

7971

867

288

635

3.70E−62

gp:[GI:e1364074:g4138364]

[LN:PPU007699] [AC:AJ007699]

[PN:hypothetical protein]

[OR:

Pseudomonas putida

]

[DE:

Pseudomonas putida

ORF284,

ptsO gene & ORF96.]

[NT:ORF284]

Contig154G

22265930_c3_1065

3846

7972

417

138

411

2.00E−38

pir:[LN:F64083] [AC:F64083]

[PN:ribosomal protein L12]

[CL:

Escherichia coli

ribosomal

protein L12] [OR:

Haemophilus

influenzae

]

Contig154G

22285385_f3_491

3847

7973

2841

946

1083

1.30E−109

gp:[GI:d1035700:g3953516]

[LN:AB002529] [AC:AB002529]

[PN:sensor kinase rtpA] [GN:rtpA]

[OR:

Pseudomonas tosii

]

[SR:

Pseudomonas tosii

(strain:PT814) DNA]

[DE:

Pseudomonas tosii

gene for

sensor kinase rtpA, complete cds.]

[NT:putative sensor kinase;

regulator for tosin and]

Contig154G

22378415_f2_340

3848

7974

1278

425

831

6.40E−83

sp:[LN:ACKA_CLOTS]

[AC:Q59331] [GN:ACKA]

[OR:CLOSTRIDIUM

THERMOSACCHAROLYTICUM]

[SR:,THERMOANAEROBACTE

RIUM

THERMOSACCHAROLYTICUM]

[EC:2.7.2.1] [DE:ACETATE

KINASE,(ACETOKINASE)]

[SP:Q59331]

Contig154G

22383466_c2_1009

3849

7975

1029

342

1074

1.10E−108

gp:[GI:d1023669:g2529237]

[LN:D50654] [AC:D50654]

[PN:acetohydroxy acid

isomeroreductase] [GN:ilvC]

[OR:

Phaeospirillum

molischianum]

[SR:

Rhodospirillum molischianum

DNA] [DE:

Rhodospirillum

molischianum

bchZ, pufB, pufA,

pufL, pufM, pufC andilvC genes,

partial and complete cds.]

Contif154G

22453461_c3_1174

3850

7976

255

74

218

5.80E−18

sp:[LN:YFHJ_PSEAE]

[AC:Q51384] [GN:YFHJ]

[OR:

PSEUDOMONAS

AERUGINOSA

]

[DE:HYPOTHETICAL 7.8 KD

PROTEIN IN PEPB-FDX

INTERGENIC REGION]

[SP:Q51384]

Contig154G

22457203_f2_439

3851

7977

555

184

342

4.20E−31

sp:[LN:YQGE_ECOLI]

[AC:P52049:P76648] [GN:YQGE]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 20.7 KD

PROTEIN IN GSHB-ANSB

INTERGENIC REGION (O211)]

SP:P52049:P76648]

Contig154G

22479677_f1_6

3852

7978

186

61

NO-HIT

Contig154G

22531500_c3_1075

3853

7979

1101

366

NO-HIT

Contig154G

22542766_c2_1046

3854

7980

1482

493

841

5.50E−84

gp:[GI:e1325654:g3650360]

[LN:PPY18131] [AC:Y18131]

[PN:polynucleotide

adenylyltransferase] [GN:pcnB]

[OR:

Pseudomonas putida

]

[EC:2.7.7.19] [DE:

Pseudomonas

putida

pcnB gene and partial folK

gene.]

Contig154G

22657558_f1_120

3855

7981

186

61

NO-HIT

Contig154G

22676577_c3_1170

3856

7982

192

63

NO-HIT

Contig154G

22697252_c1_860

3857

7983

1497

498

2034

2.10E-210

gp:[GI:279978:g1657238]

[LN:ACXCPR] [AC:Y09102]

[PN:secretion protein XcpR]

[GN:xcpR] [OR:Acinetobacter sp.

ADP1] [DE:Acinetobacter sp.

xcpR gene and two unknown open

reading frames.] [RE:

Contig154G

22789842_c3_1194

3858

7984

507

168

532

3.10E−51

sp:[LN:ILVH_HAEIN]

[AC:P45260] [GN:ILVH:H11584]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:4.1.3.18]

[DE:(ACETOHYDROXY-ACID

SYNTHASE SMALL SUBUNIT)

(ALS)] [SP:P45260]

Contig154G

22851640_f1_197

3859

7985

303

100

175

2.10E−13

gp:[GI:g1072400] [LN:RMPHA]

[AC:X93358] [GN:phaF]

[OR:

Sinorhizobium meliloti

]

[DE:

Rhizobium meliloti

pha[A,B,C,D,E,F,G] genes.]

Contig154G

22870630_c3_1072

3860

7986

507

168

NO-HIT

Contig154G

22929757_c3_1116

3861

7987

1035

344

742

1.70E−73

sp:[LN:HEMZ_ECOLI]

[AC:P23871:P78232]

[GN:HEMH:POPA:VISA]

[OR:

ESCHERICHIA COLI

]

[EC:4.99.1.1]

[DE:SYNTHETASE)]

[SP:P23871:P78232]

Contig154G

23444692_f3_575

3862

7988

630

209

120

4.50E−05

gp:[GI:g3608402] [LN:AF071085]

[AC:AF071085] [PN:Orfde14]

[OR:

Enterococcus faecalis

]

[DE:

Enterococcus faecalis

strain

OGIRF polysaccharide

biosynthetic genecluster, partial

sequence.] [NT:hypothetical

protein]

Contig154G

23447017_f1_4

3863

7989

858

285

NO-HIT

Contig154G

23460756_f3_498

3864

7990

465

154

282

9.60E−25

pir:[LN:139736]

[AC:S68185:I39736]

[PN:hypothetical protein 6]

[OR:

Anabaena variabilis

]

Contig154G

2350702_f3_635

3865

7991

1842

613

1213

2.10E−123

gp:[GI:g1145264]

[LN:MXU37008] [AC:U37008]

[PN:KefC] [GN:kefC]

[OR:

Myxococcus xanthus

]

[SR:

Myxococcus xanthus

strain=LS500] [DE:

Myxococcus

xnathus

socD (socD500 allele) and

kefC genes, completecds.]

Contig154G

2359411_f1_108

3866

7992

201

66

NO-HIT

Contig154G

23598376_c1_812

3867

7993

900

299

NO-HIT

Contig154G

23604686_f2_434

3868

7994

1767

588

1694

2.30E−174

gp:[GI:e1372039:g4186120]

[LN:PST132364] [AC:AJ132364]

[PN:PilB protein] [GN:pilB]

[FN:involved in the translocation

of the type IV] [OR:

Pseudomonas

stutzeri

] [DE:

Pseudomonas

stutzeri

(strain JM300) pilD, pilD,

pilB and pilA genesand ORFX.]

Contig154G

2362654_f1_24

3869

7995

819

272

466

3.00E−44

sp:[LN:YGB4_ALCEU]

[AC:Q44015]

[OR:

ALCALIGENES

EUTROPHUS

]

[DE:HYPOTHETICAL 28.3 KD

PROTEIN IN GBD 5′REGION

(ORF4)] [SP:Q44015]

Contig154G

23628387_f2_292

3870

7996

942

313

146

7.80E−08

pir:[LN:H64945] [AC:H64945]

[PN:probable membrane protein

b1840] [OR:

Escherichia coli

]

Contig154G

23628458_c1_733

3871

7997

441

146

94

0.00039

gp:[GI:e1132704:g2408054]

[LN:SPAC29B12] [AC:Z99164]

[PN:hypothethical protein]

[GN:SPAC29B12.13]

[OR:

Schizosaccharomyces pombe

]

[SR:fission yeast] [DE:

S.pombe

chromosome I cosmid c29B12.]

[NT:SPAC29B12.13, unknown,

len:13]

Contig154G

23630177_f2_432

3872

7998

183

60

NO-HIT

Contig154G

23632000_f3_594

3873

7999

186

61

NO-HIT

Contig154G

23636500_f2_250

3874

8000

447

148

592

1.30E−57

gp:[GI:e279979:g1657239]

[LN:ACXCPR] [AC:Y09102]

[PN:hypothethical protein]

[OR:Acinetobacter sp. ADP1]

[DE:Acinetobacter sp. xcpR gene

and two unknown open reading

frames.] [NT:orf2]

Contig154G

23707806_f2_380

3875

8001

726

241

NO-HIT

Contig154G

23707963_f1_68

3876

8002

993

330

NO-HIT

Contig154G

23712927_f1_25

3877

8003

435

144

271

1.40E−23

sp:[LN:YBEB_ECOLI]

[AC:P05848:P77107] [GN:YBEB]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 11.6 KD

PROTEIN IN MRDA-PHPB

INTERGENIC REGION]

[SP:P05848:P77107]

Contig154G

23725056_f3_523

3878

8004

243

80

NO-HIT

Contig154G

23851562_f2_418

3879

8005

1080

359

899

4.00E−90

sp:[LN:UBIE_ECOLI]

[AC:P27851] [GN:UBIE]

[OR:

ESCHERICHIA COLI

]

[EC:2.1.1.—] [DE:(EC 2.1.1.—)]

[SP:P27851]

Contig154G

23852012_f2_349

3880

8006

2223

740

319

9.10E−47

gp:[GI:e1371100:g4160586]

[LN:VCA012458] [AC:AJ012458]

[PN:alkaline phosphatase]

[GN:phoX] [OR:

Volvox carteri

]

[EC:3.1.3.1] [DE:

Volvox carteri

mRNA for alkaline phosphatase.]

[NT:extracellular phosphatase]

Contig154G

23885968_f1_198

3881

8007

417

138

174

2.70E−13

pir:[LN:E70008] [AC:E70008]

[PN:conserved hypothetical

protein yufB] [GN:yufB]

[OR:

Bacillus subtilis

]

Contig154G

23931933_f2_393

3882

8008

198

65

NO-HIT

Contig154G

23932800_c2_870

3883

8009

381

126

167

4.90E−12

sp:[LN:GRP_ARATH]

[AC:P27483] [OR:ARABIDOPSIS

THALIANA] [SR:,MOUSE-EAR

CRESS] [DE:GLYCINE-RICH

CELL WALL STRUCTURAL

PROTEIN PRECURSOR]

[SP:P27483]

Contig154G

239387_f2_365

3884

8010

1215

404

1321

7.60E−135

sp:[LN:DHAS_ECOLI]

[AC:P00353] [GN:ASD:HOM]

[OR:

ESCHERICHIA COLI

]

[EC:1.2.1.11]

[DE:DEHYDROGENASE)]

[SP:P99353]

Contig154G

23945212_f1_87

3885

8011

288

95

205

1.40E−16

sp:[LN:GLR3_ECOLI]

[AC:P37687] [GN:GRXC]

[OR:

ESCHERICHIA COLI

]

[DE:GLUTAREDOXIN 3

(GRX3)] [SP:P37687]

Contig154G

23962758_f3_610

3886

8012

225

74

280

1.60E−24

sp:[LN:IFI_HAEIN] [AC:P44322]

[GN:INFA:H10548]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:TRANSLATION

INITIATION FACTOR IF-1]

[SP:P44322]

Contig154G

24006942_f1_100

3887

8013

879

292

NO-HIT

Contig154G

24025927_c1_766

3888

8014

2091

696

590

6.60E−77

sp:[LN:PCRA_BACST]

[AC:P56255] [GN:PCRA]

[OR:

BACILLUS

STEAROTHERMOPHILUS

]

[EC:3.6.1.—] [DE:ATP-

DEPENDENT HELICASE

PCRA,] [SP:P56255]

Contig154G

24223817_c2_883

3889

8015

939

312

185

1.70E−11

sp:[LN:ASPH_HUMAN]

[AC:Q12797] [GN:ASPH]

[OR:

HOMO SAPIENS

]

[EC:1.14.11.16]

[DE:DIOXYGENASE)]

[SP:Q12797]

Contig154G

24224062_c1_826

3890

8016

420

139

NO-HIT

Contig154G

24226433_c1_707

3891

8017

387

128

136

2.80E−09

sp:[LN:YAIE_COLI]

[AC:P36768:P77343] [GN:YAIE]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 10.2 KD

PROTEIN IN AROM-ARAJ

INTERGENIC REGION]

[SP:P36768:P77343]

Contig154G

24250018_c1_854

3892

8018

2394

797

1949

2.10E−201

sp:[LN:SYFB_ECOLI]

[AC:P07395:Q59407] [GN:PHET]

[OR:

ESCHERICHIA COLI

]

[EC:6.1.1.20] [DE:TRNA LIGASE

BETA CHAIN) (PHERS)]

[SP:P07395:Q59407]

Contig154G

24258407_f2_295

3893

8019

222

73

NO-HIT

Contig154G

24259427_f3_624

3894

8020

474

157

107

3.30E−06

sp:[LN:YDCZ_ECOLI]

[AC:P76111] [GN:YDCZ]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETHICAL 15.9 KD

PROTEIN IN TEHB-ANSP

INTERGENIC REGION]

[SP:P76111]

Contig154G

24265625_f1_186

3895

8021

741

246

NO-HIT

Contig154G

24272937_c1_815

3896

8022

810

269

628

2.10E−61

sp:[LN:YGDL_ECOLI]

[AC:Q46927] [GN:YGDL]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETHICAL 28.6 KD

PROTEIN IN GCVA-MLTA

INTERGENIC REGION]

[SP:Q46927]

Contig154G

24275257_c2_928

3897

8023

615

204

NO-HIT

Contig154G

24334430_c2_956

3898

8024

1581

526

1563

1.70E−160

sp:[LN:LEU2_RHIPU]

[AC:P55251] [GN:LEUA]

[OR:

RHIZOMUCOR PUSILLUS

]

[EC:4.2.1.33] [DE:ISOMERASE)

(ALPHA-IPM ISOMERASE)

(IPMI)] [SP:P55251]

Contig154G

24353413_c2_867

3899

8025

699

232

763

1.00E−75

pir:[LN:164073] [AC:164073]

[PN:ribosomal protein L1]

[CL:

Escherichia coli

ribosomal

protein L1] [OR:

Haemophilus

influenzae

]

Contig154G

24414192_f2_272

3900

8026

786

261

339

8.70E−31

pri:[LN:G70515] [AC:G70515]

[PN:probable dehydrogenase]

[GN:Rv1882c]

[OR:

Mycobacterium tuberculosis

]

Contig154G

24430325_c1_843

3901

8027

831

276

302

7.30E−27

gp:[GI:g4155184] [LN:AE001495]

[AC:AE001495:AE001439]

[PN:putative] [GN:jhp0628]

[OR:

Helicobacter pylori

J99]

[DE:

Helicobacter pylori

, strain J99

section 56 or 132 of the

completegenome.] [NT:similar to

H. pylori

26695 gene HP0688 and

HP0689]

Contig154G

24473425_f3_636

3902

8028

921

306

471

9.00E−45

sp:[LN:YRFI_ECOLI]

[AC:P45803] [GN:YRFI]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 32.5 KD

PROTEIN IN MRCA-PCKA

INTERGENIC REGION]

[SP:P45803]

Contig154G

24485077_c2_1028

3903

8029

1908

635

1303

6.10E−133

sp:[LN:COPA_PSESM]

[AC:P12374] [GN:COPA]

[OR:

PSEUDOMONAS

SYRINGAE

] [DE:COPPER

RESISTANCE PROTEIN A

PRECURSOR] [SP:P12374]

Contig154G

24490937_c3_1196

3904

8030

864

287

NO-HIT

Contig154G

24492177_f1_178

3905

8031

1326

441

600

1.90E−58

pir:[LN:C70695] [AC:C70695]

[PN:probable hydrolase] [GN:lipE]

[OR:

Mycobacterium tuberculosis

]

Contig154G

24492252_c1_736

6906

8032

1284

427

291

2.20E−24

sp:[LN:SOXC_RHOSO]

[AC:P54998] [GN:SOXC:DSZC]

[OR:RHODOCOCCUS SP]

[DE:DIBENZOTIOPHENE

DESULFURIZATION ENZYME

C (DBT SULFUR

DIOXYGENZSE)] [SP:P54998]

Contig154G

245930_f1_121

3907

8033

1290

429

945

5.30E−95

gp:[GI:e293807:g1835114]

[LN:LMMETYX] [AC:Y10744]

[PN:homoserine O-

acetyltransferase] [GN:metX]

[FN:involved in methionine

biosynthesis] [OR:

Leptospira

meyeri

] [DE:

L.meyeri

metY and

metX genes.]

Contig154G

24628900_f1_189

3908

8034

780

259

484

3.80E−46

sp:[LN:HIS3_AZOCH]

[AC:Q43925] [GN:HISI]

[OR:

AZOTOBACTER

CHROOCOCCUM

MCD 1]

[EC:3.5.4.19]

[DE:PHOSPHORIBOSYL-AMP

CYCLOHYDROLASE,]

[SP:Q43925]

Contig154G

24630306_c2_933

3909

8035

1266

421

165

1.30E−09

pir:[LN:A69992] [AC:A69992]

[PN:conserved hypothetical

protein ytfP] [GN:ytfP]

[OR:

Bacillus subtilis

]

Contig154G

24640688_c2_996

3910

8036

2190

729

463

8.20E−90

sp:[LN:PRC_HAEIN]

[AC:P45306] [GN:PRC:H11668]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:3.4.21.—]

[DE:TAIL-SPECIFIC PROTEASE

PRECURSOR,(PROTEASE RE)]

[SP:P45306]

Contig154G

24640912_f3_643

3911

8037

513

170

NO-HIT

Contig154G

24641878_f2_341

3912

8038

2151

716

1756

6.10E−181

sp:[LN:PTA_HAEIN]

[AC:P45107] [GN:PTA:H11203]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:2.3.1.8]

[DE:PHOSPHATE

ACETYLTRANSFERASE,

(PHOSPHOTRANSACETYLASE)]

[SP:P45107]

Contig154G

24650803_f3_591

3913

8039

201

66

NO-HIT

Contig154G

24692591_f3_505

3914

8040

303

100

NO-HIT

Contig154G

24703137_c2_929

3915

8041

894

297

395

1.00E−36

pir:[LN:JC5587]

[AC:JC5587:PC4481]

[PN:glutamate racemase,]

[GN:murl] [CL:glutamate

racemase] [OR:

Bacillus pumilus

]

[EC:5.1.1.3]

Contig154G

24814188_c2_923

3916

8042

357

118

264

7.70E−23

sp:[LN:CSAA_BACSU]

[AC:P37584] [GN:CSAA]

[OR:

BACILLUS SUBTILIS

]

[DE:CSAA PROTEIN]

[SP:P37584]

Contig154G

24820762_f3_499

3917

8043

1200

399

604

7.20E−59

pri:[LN:B65048] [AC:B65048]

[PN:hypothetical protein b2681]

[OR:

Escherichia coli

]

Contig154G

24881341_f3_465

3918

8044

915

304

325

2.70E−29

gp:[GI:g4378158] [LN:AF102543]

[AC:AF102543] [PN:lipoprotein

precusor] [GN:vacJ]

[OR:

Zymomonas mobilis

]

[DE:

Zymomonas mobilis

5,10-

methylenetetrahydrofolate

reductase (metF)gene, partial cds;

lipoprotein precursor (vacJ),

ferredoxin-NADP+reductase (fpr),

succinic semialdehyde

dehydrogenase (gabD),thymidylate

synthetase (thyA), gluconate

permease (gntP),UTP-glucose-1-

phosphate uridyltransferase,

diaminopimelatedecarboxylase

(lysA), arginosuccinate lyase

(argH), NADH-dependentbutanol

dehydrogenase (yugJ), and

morphine 6-dehydrogenase

(mdh)genes, complete cds; tRNA-

Ala gene, complete

sequence;aminopeptidase N

(pepN) gene, complete cds; and

unknown genes.] [NT:VacJ]

Contig154G

24885937_c3_1201

3919

8045

1011

336

120

6.90E−12

sp:[LN:RC11_ECOLI]

[AC:P10487] [GN:RCI]

[OR:

ESCHERICHIA COLI

]

[DE:SHUFFLON-SPECIFIC DNA

RECOMBINASE] [SP:P10487]

Contig154G

24892527_c1_818

3920

8046

249

82

NO-HIT

Contig154G

24901387_c1_846

3921

8047

429

142

155

2.70E−11

sp:[LN:YBAV_HAEIN]

[AC:Q57134] [GN:H11008]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

H11008] [SP:Q57134]

Contig154G

2531340_f3_661

3922

8048

972

323

751

1.90E−74

sp:[LN:LEP3_AERHY]

[AC:P45794] [GN:TAPD]

[OR:

AEROMONAS

HYDROPHILA

] [EC:3.4.99.—]

[DE:TYPE 4 PREPILIN-LIKE

PROTEIN SPECIFIC LEADER

PEPTIDASE,] [SP:P45794]

Contig154G

25392130_c2_1016

3923

8049

912

303

320

9.00E−29

sp:[LN:ALSR_BACSU]

[AC:Q04778] [GN:ALSR]

[OR:

BACILLUS SUBTILIS

]

[DE:ALS OPERON

REGULATORY PROTEIN]

[SP:Q04778]

Contig154G

25396088_c1_838

3924

8050

1467

488

1212

2.70E−123

gp:[GI:G452574] [LN:RRU05294]

[AC:U05294] [PN:proton-

translocating nicotinamide

nucleotide] [GN:pntB]

[OR:

Rhodospirillum rubrum]

[EC:1.6.1.1] [DE:

Rhodospirillum

rubrum

S1 proton-translocating

nicotinamidenucleotide

transhydrotenase subunit PntAA

(pntAA), PntAB (pntAB),and PntB

(pntB) genes, complete cds.]

Contig154G

25397658_f2_386

3925

8051

360

119

NO-HIT

Contig154G

25415906_f1_123

3926

8052

441

146

193

2.60E−15

gp:[GI:g1224007]

[LN:ACU48404] [AC:U48404]

[OR:

Azotobacter chroococcum

]

[DE:

Azotobacter chroococcum

ORF1, ORF2, ORF3, ORF4, and

ORF5H2-dependent respiration

genes, complete cds.] [NT:ORF4]

Contig154G

25417957_f2_406

3927

8053

225

74

NO-HIT

Contig154G

25506962_f2_423

3928

8054

558

185

193

2.60E−15

gp:[GI:g1072399] [LN:RMPHA]

[AC:X93358] [GN:phaE]

[OR:

Sinorhizobium meliloti

]

[DE:

Rhizobium meliloti

pha[A,B,C,D,E,F,G] genes.]

Contig154G

25554652_c2_1026

3929

8055

2364

787

2071

2.50E−214

gp:[GI:g4206631] [LN:AF067954]

[AC:AF067954] [PN:putative

cation transporting P-type ATPase

SilP] [GN:silP] [OR:

Salmonella

typhimurium

] [DE:

Salmonella

typhimurium

plasmid pMG101

silver binding proteinprecursor

SilE (silE), silRS operon,

silC(ORF96)BA(ORF105)P

operon,complete sequence; and

ORF191 gene, partial cds.]

[NT:similar to heavy-metal

resistance efflux P-type]

Contig154G

25625627_c1_741

3930

8056

1008

335

727

6.70E−72

sp:[LN:RLUC_ECOLI]

[AC:P23851] [GN:RLUC]

[OR:

ESCHERICHIA COLI

]

[EC:4.2.1.70]

[DE:(PSEUDOURIDYLATE

SYNTHASE) (URACIL

HYDROLYASE)] [SP:P23851]

Contig154G

25641525_c1_745

3931

8057

879

292

436

4.60E−41

gp:[GI:e1319245:g35599998]

[LN:SC5C7] [AC:AL031515]

[PN:hypothetical protein

SC5C7.08] [GN:SC5C7.08]

[OR:

Streptomyces coelicolor

]

[DE:

Streptomyces coelicolor

cosmid 5C7.] [NT:SC5C7.08,

unknown, len: 346; similar to]

Contig154G

25665875_c2_873

3932

8058

1923

640

1766

5.30E−182

sp:[LN:HTPG_ACTAC]

[AC:P54649] [GN:HTPG]

[OR:

ACTINOBACILLUS

ACTINOMYCETEMCOMITANS

]

[SR:,

HAEMOPHILUS

ACTINOMYCETEMCOMITANS

]

[DE:HEAT SHOCK PROTEIN

HTPG (HIGH TEMPERATURE

PROTEIN G)] [SP:P54649]

Contig154G

25786532_c2_1015

3933

8059

849

282

345

2.00E−31

sp:[LN:YJJV_ECOLI]

[AC:P39408:P78143] [GN:YJJV]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 28.9 KD

PROTEIN IN OSMY-DEOC

INTERGENIC REGION]

[SP:P39408:P78143]

Contig154G

25804780_f2_352

3934

8060

861

286

948

2.50E−95

gp:[GI:g2258280]

[LN:NGU86637] [AC:U86637]

[PN:thymidylate synthase]

[GN:thyA] [OR:

Neisseria

gonorrhoeae

] [DE:

Neisseria

gonorrhoeae

thymidylate synthase

(thyA) gene, completecds.]

Contig154G

2585933_f3_466

3935

8061

864

287

452

9.20E−43

gp:[GI:d1033567:g3513356]

[LN:AB017194] [AC:AB017194]

[GN:ORG270] [OR:

Plectonema

boryanum

] [SR:

Plectonema

boryanum

(strain:dg5) DNA]

[DE:

Plectonema boryanum

ORF270, proline iminopeptidase,

ferredoxin andamidase enhancer

genes, complete and partial cds.]

[NT:hypothetical protein]

Contig154G

26042258_c1_770

3936

8062

198

65

NO-HIT

Contig154G

26178752_f1_125

3937

8063

543

180

318

1.50E−28

sp:[LN:DYR3_SALTY]

[AC:P12833] [GN:DHRFIII]

[OR:

SALMONELLA

TYRHIMURIUM

] [EC:1.5.1.3]

[DE:DIHYDROFOLATE

REDUCTASE TYPE III,]

[SP:P12833]

Contig154G

26346886_c2_1030

3938

8064

3198

1065

3725

0

sp:[LN:YBDE_ECOLI]

[AC:P38054:P77767] [GN:YBDE]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 114.7 KD

PROTEIN IN NFRB-PHEP

INTERGENIC REGION]

[SP:P38054:P77767]

Contig154G

26369077_c2_1052

3939

8065

561

186

479

1.30E−45

gp:[GI:e1310876:g3319721]

[LN:SC6A9] [AC:AL031035]

[PN:hypothetical protein

SC6A9.02] [GN:SC6A9.02]

[OR:

Streptomyces coelicolor

]

[DR:

Streptomyces coelicolor

cosmid 6A9.] [NT:SC6A9.02,

unknown, len: 213; som

similarity to]

Contig154G

26378393_f3_627

3940

8066

1311

436

383

1.90E−35

pri:[LN:C70951] [AC:C70951]

[PN:hypothetical protein Rv3197]

[GN:Rv3197] [OR:

Mycobacterium

tuberculosis

]

Contig154G

26430302_c3_1145

3941

8067

342

113

NO-HIT

Contig154G

26572777_c1_810

3942

8068

1731

576

1900

3.30E−196

sp:[LN:ILVI_ECOLI]

[AC:P00893:P78045] [GN:ILVI]

[OR:

ESCHERICHIA COLI

]

[EC:4.1.3.18] [DE:III)

(ACETOHYDROXY-ACID

SYNTHASE III LARGE

SUBUNIT) (ALS-III)]

[SP:P00893:P78045]

Contig154G

26577_c1_835

3943

8069

273

90

NO-HIT

Contig154G

26580400_c2_957

3944

8070

666

221

868

7.60E−87

sp:[LN:LEUD_AZOVI]

[AC:P96196] [GN:LEUD]

[OR:

AZOTOBACTER

VINELANDII

] [EC:4.2.1.33]

[DE:(ISOPROPYLMALATE

ISOMERASE) (ALPHA-IPM

ISOMERASE)] [SP:P96196]

Contig154G

26595793_c3_1176

3945

8071

798

265

125

1.60E−05

sp:[LN:Y367_HAEIN]

[AC:Q57065:O05019]

[GN:H10367]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

H10367] [SP:Q57065:O05019]

Contig154G

26681512_c3_1091

3946

8072

2703

900

2182

4.40E−226

gp:[GI:e1169780:g2597869]

[LN:ECAJ2539] [AC:AJ002539]

[PN:Initiation factor IF2-alpha]

[GN:infB] [FN:Translation

initiation factor] [OR:

Escherichia

coli] [DE:

Escherichia coli

(strain

EcoAU9603) infB gene

encodingtranslational initiation

factor IF2.] [SP:P02995]

Contig154G

26766250_f2_246

3947

8073

453

150

520

5.80E−50

gp:[GI:e279977:g1657237]

[LN:ACXCPR] [AC:Y09102]

[PN:hypothetical protein]

[OR:Acinetobacter sp. ADP1]

[DE:Acinetobacter sp. xcpR gene

and two unknown open reading

frames.] [NT:orf1]

Contig154G

27290_c2_915

3948

8074

1266

421

204

5.60E−14

pir:[LN:B69348] [AC:B69348]

[PN:magnesium and cobalt

transporter (corA) homolog]

[CL:magnesium and cobalt

transport protein]

[OR:

Archaeoglobus fulgidus

]

Contig154G

273462_f3_623

3949

8075

1938

645

1059

4.40E−107

pri:[LN:D70609]

[PN:probable fadD6 protein]

[GN:fadD6] [CL:

Mycobacterium

tuberculosis

probable fadD6

protein] [OR:

Mycobacterium

tuberculosis

]

Contig154G

2741327_c3_1079

3950

8076

795

264

116

0.00022

gp:[GI:e1314388:g3402249]

[LN:SC2A11] [AC:AL031184]

[PN:hypothetical protein

SC2A11.16] [GN:SC2A11.16]

[OR:

Streptomyces coelicolor

]

[DE:

Streptomyces coelicolor

cosmid 2A11.] [NT:SC2A11.16,

unknown, len: 340; some

similarity to]

Contig154G

2768758_f1_77

3951

8077

630

209

139

2.40E−09

gp:[GI:g3293540] [LN:AF072709]

[AC:AF072709] [PN:putative

transcriptional regulator]

[OR:

Streptomyces lividans

]

[DE:

Streptomyces lividans

amplifiable element AUD4:

putativetranscriptonal regulator,

putative ferredoxin, putative

cytochromeP450 oxidoreductase,

and putative oxidoreductase genes,

completecds and unknown genes.]

[NT:ORF2; similar to

transcriptional repressor]

Contig154G

289067_f1_79

3952

8078

522

173

NO-HIT

Contig154G

29297163_f1_150

3953

8079

921

306

550

3.80E−53

gp:[GI:d1017162:g1799946]

[LN:D90883]

[AC:D90883:AB001340]

[PN:ALS OPERON

REGULATORY PROTEIN.]

[GN:ALSR] [OR:

Escherichia coli

]

[SR:

Escherichia coli

(strain:K12)

DNA, clone_lib:Kohara lambda

minise] [DE:

E.coli

genomic DNA,

Kohara clone #430(57.2-57.5

min.).] [NT:similar to [SwissProt

Accession Number Q04778]]

Contig154G

2931553_f2_313

3954

8080

993

330

268

2.90E−23

sp:[LN:HOLA_ECOLI]

[AC:P28630] [GN:HOLA]

[OR:

ESCHERICHIA COLI

]

[EC:2.7.7.7] [DE:DNA

POLYMERASE III, DELTA

SUBUNIT,] [SP:P28630]

Contig154G

29328187_f1_205

3955

8081

618

205

461

1.00E−43

gp:[GI:g3169573] [LN:AF062531]

[AC:AF062531] [PN:unknown]

[OR:

Pseudomonas putida

GB-1]

[DE:

Pseudomonas putida

GB-1

signal peptidase (pilD) gene,

partial cds;and unknown genes.]

[NT:OrfX]

Contig154G

29328763_c1_782

3956

8082

1335

444

1454

6.10E−149

sp:[LN:CLPX_ECOLI]

[AC:P33138] [GN:CLPX:LOPC]

[OR:

ESCHERICHIA COLI

]

[DE:ATP-DEPENDENT CLP

PROTEASE ATP-BINDING

SUBUNIT CLPX] [SP:P33138]

Contig154G

29345937_f3_615

3957

8083

543

180

570

2.90E−55

gp:[GI:g4545247] [LN:AF116285]

[AC:AF116285] [PN:invasion

protein homolog]

[OR:

Pseudomonas aeruginosa

]

[DE:

Pseudomonas aeruginosa

invasion protein homolog

andphosphoenolpyruvate-protein

phosphotransferase PtsP (ptsP)

genes,complete cds.] [NT:Orf159;

similar to

Eschcrichia coli

ygdD

and]

Contig154G

2939677_f1_64

3958

8084

1131

376

NO-HIT

Contig154G

29507877_f3_578

3959

8085

786

261

659

1.10E−64

sp:[LN:YH25_AZOCH]

[AC:P54085]

[OR:

AZOTOBACTER

CHROOCOCCUM

MCD 1]

[DE:(ORF5)] [SP:P54085]

Contig154G

29570292_c2_1013

3960

8086

630

209

106

0.00029

pir:[LN:G70325] [AC:G70325]

[PN:transcription regulator

TetR/AcrR family] [GN:acrR3]

[OR:

Aquifex aeolicus

]

Contig154G

29770656_f2_366

3961

8087

786

261

116

0.00042

sp:[LN:P60_LISWE]

[AC:Q01839] [GN:IAP]

[OR:

LISTERIA WELSHIMERI

]

[DE:PROTEIN P60 PRECURSOR

(INVASION-ASSOCIATED

PROTEIN)] [SP:Q01839]

Contig154G

29789752_c2_939

3962

8088

1170

389

949

2.00E−95

sp:[LN:YGGW_HAEIN]

[AC:P43899] [GN:H10463]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

H10463] [SP:P43899]

Contig154G

30125050_f3_524

3963

8089

1257

418

NO-HIT

Contig154G

30268927_c2_967

3964

8090

291

96

161

1.40E−11

gp:[GI:e1318690:g3550467]

[LN:HVH005286] [AC:AJ005286]

[PN:cp31AHv protein]

[FN:nucleic acid-binding protein]

[OR:

Hordeum vulgare

]

[DE:

Hordeum vulgare

cv. Haisa

mRNA for cp31 AHv protein.]

Contig154G

302_c1_700

3965

8091

186

61

NO-HIT

Contig154G

30472587_f1_84

3966

8092

246

81

NO-HIT

Contig154G

30503175_f2_248

3967

8093

384

127

NO-HIT

Contig154G

30572706_f3_535

3968

8094

2025

674

1768

3.30E−182

sp:[LN:YBJZ_ECOLI]

[AC:P75831] [GN:YBJZ]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL ABC

TRANSPORTER ATP-BINDING

PROTEIN YBJZ] [SP:P75831]

Contig154G

30578462_c1_795

3969

8095

1380

459

138

7.10E−07

pir:[LN:A69463] [AC:A69463]

[PN:2-hydroxy-6-oxo-6-

phenylhexa-2,4-dienoic acid

hydrolase (pcbD) homolog]

[OR:

Archaeoglobus fulgidus

]

Contig154G

30657953_c2_912

3970

8096

1764

587

617

3.00E−60

gp:[GI:g42691] [LN:ECRECD]

[AC:X04582] [OR:

Escherichia

coli

] [DE:

E. coli

recD gene for

exonuclease V alpha-subunit.]

[NT:exonuclease V alpha subunit

(AA 1-608)] [SP:P04993]

Contig154G

31306311_f1_114

3971

8097

624

207

NO-HIT

Contig154G

31306881_c1_757

3972

8098

240

79

NO-HIT

Contig154G

3135878_c2_1020

3973

8099

189

62

NO-HIT

Contig154G

3157750_c1_852

3974

8100

435

144

210

4.10E−17

sp:[LN:YQAA_ECOLI]

[AC:P76631:P77028]

[GN:YQAA] [OR:

ESCHERICHIA

COLI

] [DE:HYPOTHETICAL

15.6 KD PROTEIN IN GSHA-

CSRA INTERGENIC REGION]

[SP:P76631:P77028]

Contig154G

3164785_c3_1124

3975

8101

285

94

NO-HIT

Contig154G

31844563_f3_592

3976

8102

216

71

NO-HIT

Contig154G

31931501_c2_899

3977

8103

1488

495

1302

7.80E−133

sp:[LN:NUSA_ECOLI]

[AC:P03003] [GN:NUSA]

[OR:

ESCHERICHIA COLI

]

[DE:N UTILIZATION

SUBSTANCE PROTEIN A

(NUSA PROTEIN) (L FACTOR)]

[SP:P03003]

Contig154G

32032207_f3_605

3978

8104

672

223

NO-HIT

Contig154G

32114636_f2_347

3979

8105

669

222

462

8.10E−44

sp:[LN:YGGV_ECOLI]

[AC:P52061] [GN:YGGV]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOFHETICAL 21.0 KD

PROTEIN IN GSHB-ANSB

INTERGENIC REGION (O197)]

[SP:P52061]

Contig154G

32152012_f1_209

3980

8106

456

151

329

1.00E−29

sp:[LN:YQGF_HAEIN]

[AC:P43981] [GN:H10305]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

H10305] [SP:P43981]

Contig154G

3224000_f1_113

3981

8107

1569

522

543

2.10E−52

pir:[LN:D70453] [AC:D70453]

[PN:fumarate hydratase

(fumarase)] [GN:fumB] [CL:iron-

dependent tartrate dehydratase

alpha chain:iron-dependent tartrate

dehydratase alpha chain

homology] [OR:

Aquifex acolicus

]

Contig154G

32244126_f2_317

3982

8108

420

139

180

6.10E−14

sp:[LN:YIBN_ECOLI]

[AC:P37688] [GN:YIBN]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 15.6 KD

PROTEIN IN SECB-TDH

INTERGENIC REGION]

[SP:P37688]

Contig154G

32457777_c3_1207

3983

8109

936

311

267

3.70E−23

pir:[LN:B36868] [AC:B36868]

[PN:copB

homolog:hypotheticalprotein 2]

[OR:

Xanthomonas campestris

]

Contig154G

3251257_f2_305

3984

8110

285

94

NO-HIT

Contig154G

33226386_f1_216

3985

8111

2193

730

2295

4.60E−238

sp:[LN:FAOB_PSEFR]

[AC:P28793] [GN:FAOA]

[OR:

PSEUDOMONAS FRAGI

]

[EC:4.2.1.17:5.3.3.8:1.1.1.35:5.1.2

.3] [DE:HYDROXYBUTYRYL-

COA EPIMERASE,]] [SP:P28793]

Contig154G

33242137_c2_914

3986

8112

2118

705

2315

3.50E−240

gp:[GI:e1325658:g36503641

[LN:PPY18132] [AC:Y18132]

[PN:polyribonucleotide

nucleotidyltransferase] [GN:pnp]

[OR:

Pseudomonas putida

]

[EC:2.7.7.8] [DE:

Pseudomonas

putida

rpsO and pnp genes.]

Contig154G

33359711_f1_76

3987

8113

219

72

NO-HIT

Contig154G

33476452_c3_1214

3988

8114

954

317

1127

2.70E−114

sp:[LN:TRXB_ECOLI]

[AC:P09625] [GN:TRXB]

[OR:

ESCHERICHIA COLI

]

[EC:1.6.4.5] [DE:THIOREDOXIN

REDUCTASE,] [SP:P09625]

Contig154G

33693802_f1_149

3989

8115

2181

726

2826

2.50E−294

sp:[LN:CATA_ECOLI]

[AC:P13029] [GN:KATG]

[OR:

ESCHERICHIA COLI

]

[EC:1.11.16] [DE:CATALASE

HPI, (HYDROPEROXIDASE I)]

[SP:P13029]

Contig154G

3375887_c2_970

3990

8116

912

303

817

1.90E−81

pir:[LN:C69857] [AC:C69857]

[PN:formyltetrahydrofolate

deformylase homolog ykkE]

[GN:ykkE]

[CL:phosphoribosylglycinamide

formyltransferase:phosphoribosylg

lycinamide formyltransferase

homology] [OR:

Bacillus subtilis

]

Contig154G

33834375_c2_892

3991

8117

933

310

198

3.90E−14

sp:[LN:YCAY_CLOKL]

[AC:P38943]

[OR:

CLOSTRIDIUM

KLUYVERI

]

[DE:HYPOTHETICAL 33.5 KD

PROTEIN IN CATI 5′REGION

(ORFY)] [SP:P38943]

Contig154G

33869212_c2_897

3992

8118

807

268

880

4.10E−88

sp:[LN:TPIS_RHIET]

[AC:P96985] [GN:TPIA:TPI]

[OR:

RHIZOBIUM ETLI

]

[EC:5.3.1.1]

[DE:TRIOSEPHOSPHATE

ISOMERASE, (TIM)

(FRAGMENT)] [SP:P96985]

Contig154G

33879536_c1_748

3993

8119

1128

375

1316

2.60E−134

gp:[GI:g3237310]

[LN:PAU93274] [AC:U93274]

[PN:LeuB] [GN:leuB]

[OR:

Pseudomonas aeruginosa

]

[DE:

Pseudomonas aeruginosa

YafE (yafE), LeuB (leuB), Asd

(asd), FimV(fimV), and HisT

(hisT) genes, complete cds; TrpF

(trpF) gene,partial cds; and

unknown gene.]

Contig154G

33986525_f3_469

3994

8120

2793

930

2232

2.20E−231

sp:[LN:DPO1_ECOLI]

[AC:P00582] [GN:POLA:RESA]

[OR:

ESCHERICHIA COLI

]

[EC:2.7.7.7] [DE:DNA

POLYMERASE I, (POL I)]

[SP:P00582]

Contig154G

33995708_c1_837

3995

8121

336

111

269

2.30E−23

gp:[GI:g452573] [LN:RRU05294]

[AC:U05294] [PN:proton-

translocating nicotinamide

nucleotide] [GN:pntAB]

[OR:

Rhodospirillum rubrum

]

[EC:1.6.1.1] [DE:

Rhodospirillum

rubrum

S1 proton-translocating

nicotinamidenucleotide

transhydrogenase subunit PntAA

(pntAA), PntAB (pntAB),and PntB

(pntB) genes, complete cds.]

Contig154G

34005312_c2_1022

3996

8122

303

100

NO-HIT

Contig154G

34022817_c1_742

3997

8123

717

238

210

6.70E−17

gp:[GI:g567887] [LN:STMDNRN]

[AC:L37338] [PN:putative

repressor] [GN:dnrO]

[OR:

Streptomyccs peucetius

]

[SR:

Streptomyces peucetius

ATCC

29050 DNA] [DE:

Streptomyces

peucetius

TDP-D-glucose-4,6-

dehydratase (dnrM) gene,3′ end,

regulatory protein (dnrN) gene,

complete cds, and repressorprotein

(dnrO) gene, complete cds.]

[NT:putative]

Contig154G

34022885_f1_42

3998

8124

1332

443

193

1.40E−14

gp:[GI:e258655:g1628369]

[LN:DNINTREG] [AC:X98546]

[GN:gepB] [OR:

Dichelobacter

nodosus

] [DE:

D.nodosus

intB,

regA, gepA, gepB, and gepC

genes.]

Contig154G

34089125_c1_847

3999

8125

513

170

396

7.90E−37

sp:[LN:HPPK_HAEIN]

[AC:P43777] [GN:FOLK:H10064]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:2.7.6.3]

[DE:(HPPK) (6-

HYDROXYMETHYL-7,8-

DIHYDROPTERIN

PYROPHOSPHOKINASE)

(PPPK)] [SP:P43777]

Contig154G

34160876_f2_370

4000

8126

213

70

NO-HIT

Contig154G

34180312_f3_637

4001

8127

411

136

91

0.00017

sp:[LN:Y0FO_MYCTU]

[AC:P71902]

[GN:RV2310:MTCY3G12.24C]

[OR:

MYCOBACTERIUM

TUBERCULOSIS

]

[DE:HYPOTHETICAL 12.8 KD

PROTEIN CY3G12.24C]

[SP:P71902]

Contig154G

34238805_c1_729

4002

8128

216

71

NO-HIT

Contig154G

34244082_c2_1054

4003

8129

1407

468

468

1.90E−44

sp:[LN:MESJ_ECOLI]

[AC:P52097] [GN:MESJ]

[OR:

ESCHERICHIA COLI

]

[DE:CELL CYCLE PROTEIN

MESJ] [SP:P52097]

Contig154G

34276636_c3_1231

4004

8130

519

172

196

1.20E−15

pir:[LN:B70006] [AC:B70006]

[PN:hypothetical protein yuaI]

[GN:yuaI] [OR:

Baciltus subtilis

]

Contig154G

34378318_f1_2

4005

8131

588

195

97

7.30E−05

sp:[LN:SP21_BACME]

[AC:P35147] [GN:SPOIIAA]

[OR:

BACILLUS MEGATERIUM

]

[DE:ANTI-SIGMA F FACTOR

ANTAGONIST (STAGE II

SPORULATION PROTEIN AA)]

[SP:P35147]

Contig154G

34390775_c2_868

4006

8132

4143

1380

5023

0

sp:[LN:RPOB_PSEPU]

[AC:P19175] [GN:RPOB]

[OR:

PSEUDOMONAS PUTIDA

]

[EC:2.7.7.6] [DE:BETA CHAIN)

(RNA POLYMERASE BETA

SUBUNIT)] [SP:P19175]

Contig154G

34398333_c2_869

4007

8133

393

130

160

2.00E−11

gp:[GI:g401789]

[LN:PHTIPIB1A] [AC:L24206]

[GN:ipiB1] [OR:

Phytophthora

infestans

] [SR:

Phytophthora

infestans

DNA] [DE:

Phytophthora

infestans

ipiB1 gene, complete

cds.]

Contig154G

34406377_c3_1148

4008

8134

762

253

259

2.60E−22

gp:[GI:g3916253] [LN:AF087669]

[AC:AF087669] [PN:TonB]

[GN:tonB] [OR:

Bordetella

bronchiseptica

] [DE:

Bordetella

bronchiseptica

TonB (tonB), ExbB

(exbB), and ExbD (exbD)genes,

complete cds.]

Contig154G

34409650_c2_999

4009

8135

1299

432

1172

4.70E−119

gp:[GI:g2896164] [LN:AF047040]

[AC:AF047040] [PN:histidyl-

tRNA synthetase] [GN:hisS]

[OR:

Salmonella typhimurium

]

[DE:

Salmonella typhimurium

histidyl-tRNA synthetase (hisS)

gene,complete cds.]

[NT:aminoacyl-tRNA synthetase]

Contig154G

34410802_c1_800

4010

8136

1239

412

1201

3.90E−122

sp:[LN:YFGB_PSEAE]

[AC:Q51385:Q51525]

[OR:

PSEUDOMONAS

AERUGINOSA

]

[DE:HYPOTHETICAL 41.7 KD

PROTEIN IN PILF-NDK

INTERGENIC REGION (ORFI)]

[SP:QS1385:Q51525]

Contig154G

34572182_c3_1130

4011

8137

594

197

NO-HIT

Contig154G

34625683_c3_1102

4012

8138

288

95

312

6.30E−28

pir:[LN:538882] [AC:S38882]

[PN:ribosomal protein S15]

[GN:rpsO:rprA] [CL:

Escherichia

coli

ribosomal protein

S15:eubacterial ribosomal protein

S15 homology] [OR:

Xenorhabdus

luminescens

]

Contig154G

35242187_f3_492

4013

8139

981

326

412

1.60E−38

gp:[GI:d1035162:g3845577]

[LN:AB015439] [AC:AB015439]

(PN:D-threonine dehydrogenase]

[GN:dtdS] [OR:

Pseudomonas

cruciviae

] [SR:

Pseudomonas

cruciviae (strain:IFO12047) DNA]

[DE:

Pseudomonas cruciviae

gene

for D-threonine dehydrogenase,

partialcds.] [RE:

Contig154G

35323777_c3_1232

4014

8140

360

119

342

4.20E−31

sp:[LN:IHFA_PSEAE]

[AC:Q51472] [GN:HIMA]

[OR:

PSEUDOMONAS

AERUGINOSA

]

[DE:INTEGRATION HOST

FACTOR ALPHA-SUBUNIT

(IHF-ALPHA)] [SP:Q51472]

Contig154G

35348150_c2_884

4015

8141

585

194

NO-HIT

Contig154G

35703140_c3_1184

4016

8142

597

198

625

4.30E−61

sp:[LN:ORN_HAEIN]

[AC:P45340] [GN:ORN:H11715]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:3.1.—.—]

[DE:OLIGORIBONUCLEASE,]

[SP:P45340]

Contig154G

35819062_f2_274

4017

8143

807

268

330

7.80E−30

pir:[LN:C69304] [AC:C69304]

[PN:enoyl-CoA hydratase (fad-1)

homolog] [CL:naphthoate

synthase:enoyl-CoA hydratase

homology] [OR:

Archaeoglobus

fulgidus

]

Contig154G

35941527_c3_1064

4018

8144

528

175

381

3.10E−35

pir:[LN:E64083] [AC:E64083]

[PN:ribosomal protein L10]

[CL:

Escherichia coli

ribosomal

protein L10] [OR:

Haemophilus

influenzae

]

Contig154G

35954002_c3_1234

4019

8145

1560

519

1138

1.90E−115

gp:[GI:d1038193:g4200042]

[LN:AB022715] [AC:AB022715]

[PN:exopolyphosphatase]

[GN:ppx] [OR:

Pseudomonas

aeruginosa

] [SR:

Pseudomonas

aeruginosa

(strain:PAO1) DNA]

[DE:

Pseudomonas aeruginosa

ppx

gene for exopolyphosphatase,

completecds.]

Contig154G

36125260_c3_1212

4020

8146

456

151

509

8.40E−49

gp:[GI:g1545991]

[LN:YEU58366] [AC:U58366]

[PN:arsenate reductase] [GN:arsC]

[OR:

Yersinia enterocolitica

]

[DE:

Yersinia enterocolitica

Tn2502 transposon defective

transposase(tnpA), resolvase

(tnpR), arsenate reductase (arsC),

transmembraneprotein of arsenite

pump (arsB), arsenite inducible

repressor(arsR), and ArsH (arsH)

genes, complete cds.] [NT:ArsC]

Contig154G

36132640_c3_1141

4021

8147

309

102

282

9.60E−25

pir:[LN:B69779] [AC:B69779]

[PN:conserved hypothetical

protein ydeP] [GN:ydeP]

[CL:conserved hypothetical

protein MTH1285] [OR:

Bacillus

subtilis

]

Contig154G

36213566_c3_1155

4022

8148

894

297

114

0.00035

pir:[LN:C70421] [AC:C70421]

[PN:conserved hypothetical

protein aq_1392] [GN:aq_1392]

[OR:

Aquifex aeolicus

]

Contig154G

36568750_c3_1143

4023

8149

777

258

NO-HIT

Contig154G

36601058_c2_886

4024

8150

630

209

132

1.00E−05

pir:[LN:S77910] [AC:S77910]

[PN:hypothetical protein 1]

[CL:grapevine trichovirus B

hypothetical protein]

[OR:grapevine virus A]

Contig154G

37812_f3_588

4025

8151

1077

358

NO-HIT

Contig154G

38577_c2_968

4026

8152

534

177

NO-HIT

Contig154G

3906551_c2_985

4027

8153

1356

451

1043

2.20E−105

sp:[LN:TIG_ECOLI]

[AC:P22257:P15299:P77603]

[GN:TIG] [OR:

ESCHERICHIA

COLI

] [DE:TRIGGER FACTOR

(TF)]

[SP:P22257:P15299:P77603]

Contig154G

3906636_c2_876

4028

8154

681

226

277

3.20E−24

pir:[LN:H69778] [AC:H69778]

[PN:hypothetical protein ydeN]

[GN:ydeN] [OR:

Bacillus subtilis

]

Contig154G

3908593_f1_5

4029

8155

927

308

376

1.00E−34

pir:[LN:H71275] [AC:H71275]

[PN:conserved hypothetical

protein TP0822] [GN:TP0822]

[OR:

Treponema pallidum

subsp.

pallidum] [SR:, syphilis

spirochete]

Contig154G

3916088_c3_1071

4030

8156

768

255

NO-HIT

Contig154G

3937577_c1_692

4031

8157

621

206

219

4.50E−18

gp:[GI:e1309481:g3288111]

[LN:CAAJ1918] [AC:AJ001918]

[PN:outer membrane protein 21,

Omp21] [GN:omp21]

[OR:

Comamonas acidovorans

]

[DE:

Comamonas acidovorans

omp21 gene.]

Contig154G

3939392_f3_614

4032

8158

870

289

287

2.80E−25

pir:[LN:S75955] [AC:S75955]

[PN:hypothetical protein]

[CL:transcription activator LysR-

type] [OR:Synechocystis sp.]

[SR:PCC 6803., PCC 6803]

[SR:PCC 6803,]

Contig154G

3947188_c3_1067

4033

8159

882

293

479

1.30E−45

gp:[GI:e1355673:g3928730]

[LN:SCD78] [AC:AL034355]

[PN:putative oxidoreductase]

[GN:SCD78.21c]

[OR:

Streptomyces coelicolor

]

[DE:

Streptomyces coelicolor

cosmid D78.] [NT:SCD78.21c,

putative oxidoreductase, len: 584;]

Contig154G

3957508_f2_362

4034

8160

1053

350

920

2.40E−92

gp:[GI:g4321580] [LN:AF050114]

[AC:AF050114] [PN:alginate

lyase] [OR:Pseudomonas sp. W7]

[DE:Pseudomonas sp. W7 alginate

lyase gene, complete cds.]

Contig154G

39707_c1_747

4035

8161

663

220

211

4.50E−20

pir:[LN:F70788] [AC:F70788]

[PN:hypothetical protein Rv3661]

[GN:Rv3661] [OR:

Mycobacterium

tuberculosis

]

Contig154G

3994626_f1_80

4036

8162

2634

877

2494

3.80E−259

sp:[LN:SYL_ECOLI]

[AC:P07813:P78292:P77110]

[GN:LEUS] [OR:

ESCHERICHIA

COLI

] [EC:6.1.1.4] [DE:LEUCYL-

TRNA SYNTHETASE,

(LEUCINE--TRNA LIGASE)

(LEURS)]

[SP:P07813:P78292:P77110]

Contig154G

4062627_f3_602

4037

8163

951

316

536

1.20E−51

sp:[LN:HTRB_ECOLI]

[AC:P24187] [GN:HTRB]

[OR:

ESCHERICHIA COLI

]

[EC:2.3.1.—] [DE:PROTEIN B)]

[SP:P24187]

Contig154G

40792_c3_1142

4038

8164

2679

892

2911

0

sp:[LN:TOP1_ECOLI]

[AC:P06612] [GN:TOPA:SUPX]

[OR:

ESCHERICHIA COLI

]

[EC:5.99.1.2]

[DE:(UNTWISTING ENZYME)

(SWIVELASE)] [SP:P06612]

Contig154G

4080092_c3_1241

4039

8165

2823

940

133

4.90E−05

gp:[GI:g4378768] [LN:AF116775]

[AC:AF116775] [PN:NADH

dehydrogenase subunit 5]

[GN:nad5] [OR:Mitochondrion

Pedinomonas minor]

[SR:Pedinomonas minor]

[EC:1.6.5.3] [DE:Pedinomonas

minor mitochondrion, complete

genome.]

Contig154G

4095342_c2_872

4040

8166

366

121

97

7.50E−05

sp:[LN:Y040_MYCTU]

[AC:Q10785] [GN:MTCY48.24]

[OR:

MYCOBACTERIUM

TUBERCULOSIS

]

[DE:HYPOTHETICAL 21.6 KD

PROTEIN CY48.24] [SP:Q10785]

Contig154G

4095467_c3_1235

4041

8167

840

279

805

3.60E−80

sp:[LN:ACCA_HAEIN]

[AC:P43872] [GN:ACCA:H10406]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:6.4.1.2]

[DE:(EC 6.4.1.2)] [SP:P43872]

Contig154G

4096928_c3_1078

4042

8168

1830

609

1522

3.80E−156

sp:[LN:UVRC_PSEFL]

[AC:P32966] [GN:UVRC]

[OR:

PSEUDOMONAS

FLUORESCENS

]

[DE:EXCINUCLEASE ABC

SUBUNIT C] [SP:P32966]

Contig154G

4101467_c3_1197

4043

8169

954

317

161

4.60E−09

pir:[LN:G69849] [AC:G69849]

[PN:endo-1,4-beta-xytanase

homolog yjeA] [GN:yjeA]

[CL:nodB homology]

[OR:

Bacillus subtilis

]

Contig154G

4104202_c3_1237

4044

8170

846

281

627

2.60E−61

sp:[LN:PROC_PSEAE]

[AC:P22008] [GN:PROC]

[OR:

PSEUDOMONAS

AERUGINOSA

] [EC:1.5.12]

[DE:PYRROLINE-5-

CARBOXYLATE REDUCTASE,

(P5CR) (P5C REDUCTASE)]

[SP:P22008]

Contig154G

4114375_c1_783

4045

8171

762

253

NO-HIT

Contig154G

4141893_c3_1180

4046

8172

1419

472

926

4.20E−143

sp:[LN:YFGK_HAEIN]

[AC:P44536] [GN:H10136]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL GTP-

BINDING PROTEIN H10136]

[SP:P44536]

Contig154G

4179688_c3_1213

4047

8173

735

244

780

1.60E−77

gp:[GI:g1545994]

[LN:YEU58366] [AC:U58366]

[PN:ArsH] [GN:arsH]

[FN:unknown] [OR:

Yersinia

enterocolitica] [DE:

Yersinia

enterocotitica

Tn2502 transposon

defective transposase(tnpA)

resolvase (tnpR), arsenate

reductase (arsC),

transmembraneprotein of arsenite

pump (arsB), arsenite inducible

repressor(arsR), and ArsH (arsH)

genes, complete cds.] [NT:required

for arsenic resistance]

Contig154G

4298203_c3_1195

4048

8174

1602

533

1862

3.60E−192

sp:[LN:RF3_HAEIN]

[AC:P43928] [GN:PRFC:H11735]

[OR:

HAEMOPHILUS

INFLUENZAE

] [DE:PEPTIDE

CHAIN RELEASE FACTOR 3

(RF-3)] [SP:P43928]

Contig154G

430327_f3_515

4049

8175

684

227

775

5.50E−77

sp:[LN:IRLR_BURPS]

[AC:O31395] [GN:IRLR]

[OR:

BURKHOLDERIA

PSEUDOMALLAI

]

[SR:,

PSEUDOMONAS

PSEUDOMALLAI

]

[DE:TRANSCRIPTIONAL

ACTIVATOR PROTEIN IRLR]

[SP:O31395]

Contig154G

4307888_c1_705

4050

8176

2109

702

261

4.50E−28

pir:[LN:G6492I] [AC:G64921]

[PN:probable membrane protein

b1645] [OR:

Escherichia coli

]

Contig154G

431400_f1_223

4051

8177

921

306

NO-HIT

Contig154G

4322818_c2_1041

4052

8178

1137

378

807

2.20E−80

gp:[GI:g452572] [LN:RRU05294]

[AC:U05294] [PN:proton-

translocating nicotinamide

nucleotide] [GN:pntAA]

[OR:

Rhodospirillum rubrum

]

[EC:1.6.1.1] [DE:

Rhodospirillum

rubrum

S1 proton-translocating

nicotinamidenucleotide

transhydrogenase subunit PntAA

(pntAA), PntAB (pntAB),and PntB

(pntB) genes, complete cds.]

Contig154G

4337578_c3_1220

4053

8179

924

307

979

1.30E−98

sp:[LN:CYSM_ECOLI]

[AC:P16703] [GN:CYSM]

[OR:

ESCHERICHIA COLI

]

[EC:4.2.99.8] [DE:(O-

ACETYLSERINE (THIOL)-

LYASE B) (CSASE B)]

[SP:P16703]

Contig154G

4390688_f3_582

4054

8180

2343

780

125

7.60E−07

pir:[LN:S64724]

[AC:564724:547502] [PN:uxpB

protein] [GN:uxpB]

[OR:

Pseudomonas putida

]

Contig154G

4391263_f2_451

4055

8181

714

237

380

3.90E−35

gp:[GI:g3170570] [LN:AF058302]

[AC:AF058302] [PN:FrnE]

[GN:frnE] [OR:

Streptomyces

roseofulvus

] [DE:

Streptomyces

roseofulvus

frenolicin biosynthetic

gene cluster,complete sequence.]

Contig154G

4406537_c1_727

4056

8182

1215

404

989

1.20E−99

gp:[GI:g3978480] [LN:AF092918]

[AC:AF092918] [PN:outer

membrane secretion protein S]

[GN:xcpS] [OR:

Pseudomonas

alcaligenes

] [DE:

Pseudomonas

alcaligenes outer membrane Xcp-

secretion system genecluster.]

[NT:XcpS]

Contig154G

4429218_c3_1208

4057

8183

1503

500

737

5.80E−73

gp:[GI:g4206629] [LN:AF067954]

[AC:AF067954] [PN:putative

membrane fusion protein SilB]

[GN:silB] [OR:

Salmonella

typhimurium

] [DE:

Salmonella

typhimurium

plasmid pMG101

silver binding proteinprecursor

SilE (silE), silRS operon,

silC(ORF96)BA(ORF105)P

operon,complete sequence; and

ORF191 gene, partial cds.]

[NT:similar to

Escherichia coli

ORF ylcD and]

Contig154G

4456517_c2_960

4058

8184

1035

344

349

7.60E−32

gp[GI:d103718:g4062962]

[LN:AB014757] [AC:AB014757]

[PN:PhbR] [GN:phbR]

[OR:Pseudomonas sp. 61-3]

[SR:Pseudomonas sp. 61-3

(strain:61-3) DNA]

[DE:Pseudomonas sp. 61-3 genes

for PhbR, acetoacetyl-CoA

reductase,beta-ketothiolase and

PHB synthase, complete cds.]

Contig154G

4492061_f3_675

4059

8185

1161

386

NO-HIT

Contig154G

4531675_c2_1018

4060

8186

267

88

NO-HIT

Contig154G

4538217_c3_1086

4061

8187

759

252

596

5.10E−58

sp:[LN:YJFH_HAEIN]

[AC:P44906] [GN:H10860]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:2.1.1.—]

[DE:HYPOTHETICAL

TRNA/RRNA

METHYLTRANSFERASE

H10860,] [SP:P44906]

Contig154G

4539665_c1_731

4062

8188

186

61

NO-HIT

Contig154G

4558182_c2_993

4063

8189

699

232

470

1.10E−44

pir:[LN:C64657] [AC:C64657]

[PN:2-keto-3-deoxy-6-

phosphogluconate aldolase] [CL:2-

dehydro-3-

deoxyphosphogluconate aldolase]

[OR:

Helicobacter pylori

]

Contig154G

4568755_c3_1172

4064

8190

1326

441

465

3.90E−44

pir:[LN:S76126] [AC:S76126]

[PN:hypothetical protein]

[OR:Synechocystis sp.] [SR:PCC

6803,, PCC 6803] [SR:PCC 6803,]

Contig154G

4687503_f2_256

4065

8191

300

99

145

3.10E−10

sp:[LN:H82_NEIGO]

[AC:P11910] [OR:

NEISSERIA

GONORRHOEAE

] [DE:OUTER

MEMBRANE PROTEIN H.8

PRECURSOR] [SP:P11910]

Contig154G

4694136_f2_291

4066

8192

408

135

151

7.30E−11

pir:[LN:A64946] [AC:A64946]

[PN:hypothetical protein b1841]

[CL:copper resistance protein

pcoC] [OR:

Escherichia coli

]

Contig154G

4695918_c3_1224

4067

8193

549

182

173

3.40E−13

sp:[LN:YJGA_HAEIN]

[AC:P45076] [GN:H11151]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

H11151] [SP:P45076]

Contig154G

4695962_c1_763

4068

8194

471

156

NO-HIT

Contig154G

4703178_c1_830

4069

8195

402

133

271

1.40E−23

sp:[LN:ZNTR_HAEIN]

[AC:P45277] [GN:ZNTR:H11623]

[OR:

HAEMOPHILUS

INFLUENZAE

] [DE:ZN(II)-

RESPONSIVE REGULATOR

HOMOLOG] [SP:P45277]

Contig154G

4704202_f1_86

4070

8196

1059

352

652

5.90E−64

sp:[LN:YJEQ_HAEIN]

[AC:P45339] [GN:H11714]

[OR:

HAEMOPHILUS

INFLUENZAE

]

[DE:HYPOTHETICAL PROTEIN

H11714] [SP:P45339]

Contig154G

4714380_c2_930

4071

8197

1056

351

NO-HIT

Contig154G

4728285_c2_966

4072

8198

597

198

152

5.70E−11

pir:[LN:F70558] [AC:F70558]

[PN:hypothetical protein Rv1624c]

[GN:Rv1624c]

[OR:

Mycobacterium tuberculosis

]

Contig154G

4773467_c3_1205

4073

8199

1062

353

NO-HIT

Contig154G

4860687_f3_613

4074

8200

279

92

NO-HIT

Contig154G

4869086_c3_1080

4075

8201

858

285

372

2.80E−34

sp:[LN:ADA_ECOLI]

[AC:P06134:Q47032] [GN:ADA]

[OR:

ESCHERICHIA COLI

]

[EC:2.1.1.63] [DE:(EC 2.1.1.63)

(O-6-METHYLGUANINE-DNA

ALKYLTRANSFERASE)]]

[SP:P06134:Q47032]

Contig154G

4877203_c2_889

4076

8202

1011

336

340

6.80E−31

sp:[LN:YJCR_ECOLI]

[AC:P32716] [GN:YJCR]

[OR:

ESCHERICHIA COLI

]

[DE:HYPOTHETICAL 36.9 KD

PROTEIN IN FDHF-PHNP

INTERGENIC REGION (F343)]

[SP:P32716]

Contig154G

4882755_f1_148

4077

8203

2322

773

2004

3.20E−207

gp:[GI:e1321548:g3641832]

[LN:AVPTSP] [AC:Y14681]

[PN:enzyme I] [GN:ptsP]

[FN:energy coupling protein in

phosphotransferase]

[OR:

Azotobacter vinelandii

]

[EC:2.7.3.9] [DE:

Azotobacter

vinelandii

ptsP gene.]

Contig154G

4882803_f3_673

4078

8204

210

69

NO-HIT

Contig154G

489001_c2_971

4079

8205

678

225

284

1.60E−32

gp:[GI:g3916254] [LN:AF087669]

[AC:AF087669] [PN:ExbB]

[GN:exbB] [OR:

Bordetella

bronchiseptica

] [DE:

Bordetella

bronchiseptica

TonB (tonB), ExbB

(exbB), and ExbD (exbD)genes,

complete cds.]

Contig154G

4892751_c1_851

4080

8206

606

201

558

5.40E−54

gp:[GI:g290449] [LN:ECOHIMA]

[AC:K02844] [PN:initiation factor

3] [GN:infC] [OR:

Escherichia

coli

] [SR:

E.coli

DNA, clone

lambda-himA] [DE:

E.coli

infC,

rplT, pheS, pheT and himA genes

encoding initiationfactor IF3,

ribosomal protein L20, beta- and

alpha-subunits ofphenylalanyl-

tRNA synthetase and the alpha-

subunit of integrationhost factor,

complete cds.]

Contig154G

4954688_c3_1228

4081

8207

630

209

586

5.80E−57

pir:[LN:140179] [AC:140179]

[PN:hypothetical protein 1]

[CL:hypothetical protein b2302]

[OR:

Pseudomonas cepacia

]

Contig154G

5030_f2_372

4082

8208

489

162

NO-HIT

Contig154G

5126625_c1_732

4083

8209

645

214

134

5.10E−07

pir:[LN:D70306] [AC:D70306]

[PN:conserved hypothetical

protein aq_065] [GN:aq_065]

[OR:

Aquifex aeolicus

]

Contig154G

519012_c2_871

4084

8210

1458

485

491

3.00E−89

pir:[LN:F64614] [AC:F64614]

[PN:conserved hypothetical

integral membrane protein

HP0758] [CL:conserved integral

membrane protein HP0758]

[OR:

Helicobacter pylori

]

Contig154G

5211652_c1_804

4085

8211

912

303

954

5.90E−96

gp:[GI:g4008034] [LN:AF104262]

[AC:AF104262] [PN:enoyl-(acyl-

carrier protein) reductase]

[GN:fabI] [OR:

Pseudomonas

aeruginosa

] [DE:

Pseudomonas

aeruginosa

enoyl-(acyl-carrier

protein) reductase(fabI) gene,

complete cds.]

Contig154G

5272928_c1_831

4086

8212

333

110

259

2.60E−22

sp:[LN:ARSR_ECOLI]

[AC:P37309] [GN:ARSR:ARSE]

[OR:

ESCHERICHIA COLI

]

[DE:ARSENICAL RESISTANCE

OPERON REPRESSOR]

[SP:P37309]

Contig154G

5275437_f3_493

4087

8213

825

274

373

2.20E−34

gp:[GI:e1370363:g4154042]

[LN:MLCB1450] [AC:AL035159]

[PN:putative oxidoreductase]

[GN:MLCB1450.07]

[OR:

Mycobacterium leprae

]

[DE:

Mycobacterium leprae

cosmid

B1450.] [NT:MLCB1450.07,

probable oxidoreductase, len: 304;]

Contig154G

5277135_f2_280

4088

8214

912

303

297

2.50E−26

sp:[LN:YCBK_BACSU]

[AC:P42243] [GN:YCBK]

[OR:

BACILLUS SUBTILIS

]

[DE:HYPOTHETICAL 34.0 KD

PROTEIN IN PCP 5′REGION

(ORF10)] [SP:P42243]

Contig154G

5287943_c1_836

4089

8215

1140

379

116

0.00049

sp:[LN:VBET_BPP4]

[AC:P13057] [GN:BETA]

[OR:BACTERIOPHAGE P4]

[DE:BETA PROTEIN]

[SP:P13057]

Contig154G

54625_f3_665

4090

8216

183

60

NO-HIT

Contig154G

6025266_c2_986

4091

8217

609

202

780

1.60E−77

sp:[LN:CLPP_ECOLI]

[AC:P19245] [GN:CLPP:LOPP]

[OR:

ESCHERICHIA COLI

]

[EC:3.4.21.92] [DE:PROTEIN

F21.5)] [SP:P19245]

Contig154G

6053387_f2_348

4092

8218

288

95

167

1.50E−12

pir:[LN:H64559] [AC:H64559]

[PN:conserved hypothetical

secreted protein HP0320]

[CL:conserved hypothetical

secreted protein HP0320]

[OR:

Helicobacter pylori

]

Contig154G

6064091_c1_772

4093

8219

837

278

250

2.40E−21

sp:[LN:T10_MOUSE]

[AC:P54797] [GN:T10] [OR:MUS

MUSCULUS] [DE:SER/THR-

RICH PROTEIN T10 IN DGCR

REGION] [SP:P54797]

Contig154G

6105380_f1_195

4094

8220

480

159

297

2.50E−26

gp:[GI:g3128269] [LN:AF010496]

[AC:AF010496] [PN:potential

poly(3-hydroxyalkanoate)

polymerase] [OR:

Rhodobacter

capsulatus

] [EC:2.3.1.—]

[DE:

Rhodobacter capsulatus

strain

SB1003, partial genome.]

Contig154G

6110452_c2_1051

4095

8221

360

119

483

4.80E−46

pir:[LN:R5EC20]

[AC:D64930:S08608:A02806:141

282] [PN:ribosomal protein L20]

[GN:rplT:pdZA] [CL:

Escherichia

coli

ribosomal protein L20]

[OR:

Escherichia coli

] [MP:38

min]

Contig154G

6262_c1_825

4096

8222

339

112

111

6.70E−06

sp:[LN:COPB_PSESM]

[AC:P12375] [GN:COPB]

[OR:

PSEUDOMONAS

SYRINGAE

] [DE:COPPER

RESISTANCE PROTEIN B

PRECURSOR] [SP:P12375]

Contig154G

6292077_c2_888

4097

8223

240

79

NO-HIT

Contig154G

629393_f1_164

4098

8224

207

68

158

1.30E−11

gp:[GI:g3169572] [LN:AF062531]

[AC:AF062531] [PN:unknown]

[OR:

Pseudomonas putida

GB-1]

[DE:

Pseudomonas putida

GB-1

signal peptidase (pilD) gene,

partial cds;and unknown genes.]

[NT:OrfY]

Contig154G

633427_f2_399

4099

8225

630

209

214

1.50E−17

sp:[LN:YEAS_ECOLI]

[AC:P76249:O07971:O07969]

[GN:YEAS] [OR:

ESCHERICHIA

COLI

] [DE:HYPOTHETICAL

23.2 KD PROTEIN IN GAPA-

RND INTERGENIC REGION]

[SP:P76249:O07971:O07969]

Contig154G

6431250_c1_712

4100

8226

282

93

NO-HIT

Contig154G

6681530_c1_792

4101

8227

516

171

364

2.00E−33

sp:[LN:GNTV_ECOLI]

[AC:P39208] [GN:GNTV]

[OR:

ESCHERICHIA COLI

]

[EC:2.7.1.12]

[DE:THERMOSENSITIVE

GLUCONOKINASE,

(GLUCONATE KINASE 1)]

[SP:P39208]

Contig154G

6723262_f1_190

4102

8228

1512

503

129

4.50E−08

gp:[GI:g4155417] [LN:AE001513]

[AC:AE001513:AE001439]

[PN:putative ATP-DEPENDENT

HELICASE] [GN:jhp0847]

[OR:

Helicobacter pylori

J99]

[DE:

Helicobacter pylori

, strain J99

section 74 of 132 of the

completegenome.] [NT:similar to

H. pylori

26695 gene HP0911]

Contig154G

6828138_c3_1221

4103

8229

849

282

548

6.20E−53

pir:[LN:E70330] [AC:E70330]

[PN:conserved hypothetical

protein aq_342] [GN:aq_342]

[CL:beta-lactamase regulatory

protein:beta-lactamase regulatory

protein homology] [OR:

Aquifex

aeolicus

]

Contig154G

6837653_f3_571

4104

8230

2301

766

527

2.40E−92

gp:[GI:g2981055] [LN:AF051693]

[AC:AF051693] [PN:hydroxamate-

type ferrisiderophore receptor]

[GN:pfuA] [OR:

Pseudomonas

aeruginosa

] [DE:

Pseudomonas

aeruginosa

hydroxamate-type

ferrisiderophore receptor(pfuA)

gene, comptete cds.] [NT:PfuA]

Contig154G

6855377_c1_819

4105

8231

1089

362

NO-HIT

Contig154G

6930277_f2_350

4106

8232

426

141

NO-HIT

Contig154G

7033128_f3_622

4107

8233

3378

1125

1531

3.00E−166

sp:[LN:RNE_ECOLI]

[AC:P21513:P77591]

[GN:RNE:AMS:HMPI]

[OR:

ESCHERICHIA COLI

]

[EC:3.1.4.—]

[DE:RIBONUCLEASE E,

(RNASE E)] [SP:,P21513:P77591]

Contig154G

7070918_c1_850

4108

8234

318

105

196

1.20E−15

sp:[LN:PTHP_ALCEU]

[AC:P23537] [GN:PHBH]

[OR:

ALCALIGENES

EUTROPHUS

]

[DE:PHOSPHOCARRIER

PROTEIN HPR (HISTIDINE-

CONTAINING PROTEIN)

(PROTEIN H)] [SP:P23537]

Contig154G

7082907_f3_634

4109

8235

189

62

NO-HIT

Contig154G

7141087_c3_1144

4110

8236

405

134

NO-HIT

Contig154G

7156285_c2_962

4111

8237

1314

437

1605

6.10E−165

sp:[LN:GLTP_ECOLI]

[AC:P21345] [GN:GLTP]

[OR:

ESCHERICHIA COLI

]

[DE:PROTEIN)] [SP:P21345]

Contig154G

7210207_f2_298

4112

8238

573

190

NO-HIT

Contig154G

7225057_c2_1040

4113

8239

1242

413

NO-HIT

Contig154G

782067_c2_994

4114

8240

1413

470

1160

8.70E−118

gp:[Gt:g4103625] [LN:AF026470]

[AC:AF026470] [PN:gluconate

permease] [GN:gnuT]

[OR:

Pseudomonas aeruginosa

]

[DE:

Pseudomonas aeruginosa

gluconate repressor (gnuR),

gluconate kinase(gnuk), and

gluconate permease (gnuT) genes,

complete cds.]

Contig154G

785676_c1_696

4115

8241

3030

1009

NO-HIT

Contig154G

79503_c1_844

4116

8242

1401

466

690

5.60E−68

sp:[LN:YGCA_HAEIN]

[AC:P44643] [GN:H10333]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:2.1.1.—]

[DE:HYPOTHETICAL RNA

METHYLTRANSFERASE

H10333,] [SP:P44643]

Contig154G

838925_f1_81

4117

8243

537

178

NO-HIT

Contig154G

865887_c3_1165

4118

8244

1914

637

1866

1.30E−192

sp:[LN:EDD_PSEAE]

[AC:P31961] [GN:EDD]

[OR:

PSEUDOMONAS

AERUGINOSA

] [EC:4.2.1.12]

[DE:DEHYDRATASE)]

[SP:P31961]

Contig154G

865925_f2_342

4119

8245

198

65

NO-HIT

Contig154G

89207_c2_900

4120

8246

414

137

223

1.70E−18

sp:[LN:RBFA_ECOLI]

[AC:P09170] [GN:RBFA:P15B]

[OR:

ESCHERICHIA COLI

]

[DE:RIBOSOME-BINDING

FACTOR A (P15B PROTEIN)]

[SP:P09170]

Contig154G

906937_f2_368

4121

8247

825

274

740

2.80E−73

gp:[GI:g3237313]

[LN:PAU93274] [AC:U93274]

[PN:HisT] [GN:hisT]

[OR:

Pseudomonas aeruginosa

]

[DE:

Pseudomonas aeruginosa

YafE (yaFE), LeuB (leuB), Asd

(asd), FimV(fimV), and HisT

(hisT) genes, complete cds; TrpF

(trpF) gene,partial cds; and

unknown gene.]

Contig154G

914077_c2_922

4122

8248

345

114

84

0.00092

pir:[LN:573994] [AC:S73994]

[PN:hypothetical protein

VXpSPT7_orf112]

[OR:

Mycoptasma pneumoniae

]

[SR:ATCC 29342, ATCC 29342]

[SR:ATCC 29342, ]

Contig154G

9765888_f1_137

4123

8249

708

235

202

2.90E−16

sp:[LN:YEAS_ECOLI]

[AC:P76249:O07971:O07969]

[GN:YEAS] [OR:

ESCHERICHIA

COLI

] [DE:HYPOTHETICAL

23.2 KD PROTEIN IN GAPA-

RND INTERGENIC REGION]

[SP:P76249:O07971:O07969]

Contig154G

978377_c1_832

4124

8250

477

158

403

1.40E−37

gp:[GI:g3095052] [LN:AF010234]

[AC:AF010234] [PN:ArsC]

[GN:arsC] [OR:

Pseudomonas

aeruginosa

] [DE:

Pseudomonas

aeruginosa

ars operon, regulator

(arsR), membrane pump(arsB) and

arsenate reductase (arsC) genes,

complete cds.] [NT:arsenate

reductase]

Contig154G

985681_c3_1147

4125

8251

720

239

228

4.70E−22

pir:[LN:S29308]

[AC:529308:S28380]

[PN:hypothetical protein 3 (phaC2

3′ region)] [OR:

Pseudomonas

aeruginosa

]

Contig154G

9860387_c2_1048

4126

8252

1965

654

2239

4.00E−232

sp:[LN:SYT_HAEIN]

[AC:P43014] [GN:THRS:H11367]

[OR:

HAEMOPHILUS

INFLUENZAE

] [EC:6.1.1.3]

[DE:(THRRS)] [SP:P43014]

SEQUENCE LISTING

The patent contains a lengthy “Sequence Listing” section. A copy of the “Sequence Listing” is available in electronic form from the USPTO

web site (http://seqdata.uspto.gov/sequence.html?DocID=06562958B1). An electronic copy of the “Sequence Listing” will also be available from the

USPTO upon request and payment of the fee set forth in 37 CFR 1.19(b)(3).

Number	Name	Date	Kind
5814499	Moineau	Sep 1998	A
6045997	Futreal	Apr 2000	A
6060644	Schnable	May 2000	A

Nucleic acid and amino acid sequences relating to Acinetobacter baumannii for diagnostics and therapeutics

Information

Patent Number

Date Filed

Date Issued

Inventors

Original Assignees

Examiners

Agents

CPC

US Classifications

Field of Search

US

International Classifications

Abstract

Description

Claims

RELATED APPLICATIONS

US Referenced Citations (3)

Non-Patent Literature Citations (10)

Provisional Applications (1)

Entry
database GenEmbl, accession No. J01687, Apr. 1993.*
database GenEmbl, accession No. U97062, May 1997.*
database GenEmbl, accession No. U52122, Aug. 1996.*
database GenEmbl, accession No. Z27166, Dec. 1993.*
Database GenEmbl, accession No. Z51613, Mar. 1996.*
Garcia, D.C., et al., “The use of plasmid profile analysis and ribotyping for typing Acinetobacter baumannii isolates,” Journal of Hospital Infection 34:139-144 (1996).
Ibrahim, A., et al., “Phylogentic Relationship of the Twenty-one DNA Groups of the Genus Acinetobacter as Revealed by 16S Ribosomal DNA Sequence Analysis,” International Journal of Systematic Bacteriology 47(3):837-841 (Jul. 1997).
Marques, M.B., et al., “Genotypic investigation of multidrug-resistant Acinetobacter baumannii infections in a medical intensive care unit,” Journal of Hospital Infection 37:125-135 (1997).
Sheehan, C., et al., “Genomic fingerprinting Acinetobacter baumannii: amplification of multiple inter-repetitive extragenic palindromic sequences,” Journal of Hospital Infection 31:33-40 (1995).
Traub, W., et al., “Macrorestriction Analysis (PFGE) of Serologically Cross-reactive Serovars of Acinetobacter baumannii and Genospecies 3,” Zbl. Bakt. 285:403-412; (1997).