Nutrient medium for cultivating bacteria

Information

  • Patent Grant
  • 10745662
  • Patent Number
    10,745,662
  • Date Filed
    Thursday, June 23, 2016
    8 years ago
  • Date Issued
    Tuesday, August 18, 2020
    3 years ago
Abstract
The invention relates to microbiology, and more particularly to nutrient media used for cultivating bacteria for the subsequent study thereof. A nutrient medium comprising a pancreatic digest of casein, a peptic digest of meat, a heart pancreatic digest, yeast extract, starch and water is characterized in that it additionally contains violuric acid and beef infusion, wherein the ratio of ingredients is (wt %): 0.3-1.0 pancreatic digest of casein; 0.1-1.5 peptic digest of meat; 0.1-0.9 heart pancreatic digest; 0.1-2.0 yeast extract, 0.3-0.8 starch; 0.001-0.05 violuric acid; 2.0-15 beef infusion; the remainder water. The nutrient medium can additionally contain 0.3-2.5 wt % agar-agar and/or 1-20 wt % whole or hemolyzed sheep red blood cells and/or 1-20 wt % whole or hemolyzed human red blood cells and/or 1-15 wt % horse blood serum. This provides for the simultaneous growth of the maximum possible number of bacteria present in an inoculate.
Description
CROSS-REFERENCE TO RELATED APPLICATIONS

This application is a U.S. National Phase Application under 35 U.S.C. § 371 of International Patent Application No. PCT/RU2016/000383, filed Jun. 23, 2016, which published as WO 2016/209117 A1 on Dec. 29, 2016 and which claims priority to Russian Patent Application No. 2015124601, filed on Jun. 23, 2015, all of which are herein incorporated by reference in their entirety.


SEQUENCE LISTING

The instant application contains a Sequence Listing which has been filed electronically in ASCII format and is hereby incorporated by reference in its entirety. Said ASCII copy, created on Feb. 6, 2020, is named 244008_000068_SL.txt and is 813 bytes in size.


TECHNICAL FIELD

The invention relates to microbiology, and more particularly to nutrient media used for cultivating bacteria for the subsequent study thereof.


BACKGROUND ART

For the growth and multiplication process, the bacteria must receive all the substances that are necessary for the biosynthesis of cellular components and energy production [Balows A., Hausler W. J. Jr., Herrmann K. L., Isenberg H. D., Shadow H. J. Manual of clinical Microbiology, 5thed. ASM, 1991, 1226-1288].


Nutrient media are divided into media of general use suitable for the generation of many species of microorganisms, and special media, designed for selective cultivation of certain types of bacteria, studying of their properties and storage. Among the special media are elective (selective), differential-diagnostic (indicator) and canning [Balows A., Hausler W. J. Jr., Herrmann K. L., Isenberg H. D., Shadow H. J. Manual of clinical Microbiology, 5thed. ASM, 1991, 1226-1288].


There is a general-purpose medium, the so-called Columbian medium, containing pancreatic digest of casein, pepsin digest of meat, pancreatic digest of a heart, yeast extract, starch and water.


This medium was chosen by us as a prototype of the claimed invention [Ellner, P D, C J Stoessel, E. Drakeford, and F. Vasi. 1966. A new culture medium for medical bacteriology. Am. J. Clin. Pathol. 45:502-504].


The disadvantage of the prototype is the fact that its use does not take into account the two qualities of the medium, the need for which arose after the discovery of the bacteria called “not yet cultivated” [Oliver, J D. “Recent findings on the viable but nonculturable state in pathogenic bacteria.” FEMS Microbiol Rev 2010, 34: 415-25]—the simultaneous growth in a single casserole (tube) of a mixture of maximally diverse bacteria and a sufficient rate of growth of both individual bacteria and their mixed communities.


SUMMARY OF THE INVENTION

It is an object of the present invention to provide a nutrient medium allowing simultaneous growth of the maximum possible number of bacteria present in the seed material.


According to the invention, the nutrient medium including pancreatic digest of casein, pepsin digest of meat, pancreatic digest of a heart, yeast extract, starch and water, additionally contains violuric acid and beef infusion, with the following ratio of components (wt %):


pancreatic digest of casein—0.3-1.0;


pepsin digest of meat—0.1-1.5;


pancreatic digest of a heart—0.1-0.9;


yeast extract 0.1-2.0;


starch—0.3-0.8;


violuric acid—0.001-0.05;


infusion of beef—2.0-15;


water—the rest.


The nutrient medium may additionally contain 0.3 to 2.5 wt % of agar-agar and/or whole or hemolysed erythrocytes of sheep blood—1-20 wt %, and/or whole hemolyzed erythrocytes of human blood—1-20 wt %, and/or horse blood serum—1-15% by weight.


The applicant is not aware of any sources of information that would contain information about identical technical solutions, which makes it possible to conclude that the claimed invention complies with the “Novelty” (“N”) criterion.


Due to the implementation of the claimed technical solution, a technical result is achieved, which is to ensure a sufficient simultaneous growth of the maximum possible number of bacteria present in the material being sown.


The applicant has not found any sources of information containing data on the influence of the features of the invention on the technical result produced by the invention.


In applicant's opinion, the abovementioned new properties of the object enable to conclude that the invention conforms to the criterion “Inventive Step” (IS).







PREFERRED EMBODIMENT
Preparation of Nutrient Medium

The medium was prepared as follows: the following weighed portions of the medium components were prepared, wt %: pancreatic digest of casein, 0.3-1.0; pepsin digest of meat, 0.1-1.5; pancreatic digest of a heart, 0.1-0.9; yeast extract, 0.1-2.0; starch, 0.3-0.8; violuric acid, 0.001-0.05; beef infusion, 2.0-15. The components were mixed, distilled water was added to a total volume of 1000 ml, a pH of 7.3±0.2 was set (a 0.1 N hydrochloric acid solution or 0.1 N sodium hydroxide solution) and boiled, then hot-filtered through a paper, cotton-gauze, or other type of filter, or a web that retains mechanical impurities, or allowed to stand.


To prepare the agar medium 0.3-2.5 wt % agar-agar was added to the original mixture before adding water, after which the preparation was carried out in the same way as for the liquid medium. The settled melted agar media were filtered through a cotton-gauze filter.


The medium was sterilized by high temperature in autoclaves under pressure or with flowable steam. Typically, the medium was sterilized in an autoclave at 0.5-1.0 atm. (120.6°) for 15-30 minutes. After cooling to +450° C., whole or hemolyzed erythrocytes of ram blood or human blood 1-20 wt %, or horse blood serum (1-15 wt %) were added to the medium according to the example.


Assessment of Microbial Diversity

An artificial mixture of bacteria with morphological features distinguishable by light microscopy was placed on the medium: gram-positive representatives of the genera Staphylococcus, Streptococcus, Micrococcus, various Corynebacterium, spore-forming Bacillus, Paenibacillus, Oceanobacillus, various Actinomyces, Lactobacillus Gram-negative Neisseria, Escherichia, Brucella, Pseudomonas, Acinetobacter, Proteus, Bordetella. From the colonies of microorganisms smears were prepared and then Gram stained, followed by the use of light microscopy.


The results of the comparison with the prototype of the claimed nutrient medium and medium supplemented with agar-agar according to the number of different grown bacteria are given in Table 1.


Analysis of the results shown in Table 1 showed that the declared nutrient medium with the addition of agar-agar and without it allows the cultivation of a maximum number of microorganisms superior to that of the prototype, both with the addition of erythrocytes of the blood of a ram or human blood or serum and without them.


The results of the comparison with the prototype according to the number of different grown bacteria are given in Table 2.


Analysis of the results shown in Table 2 showed that the declared liquid nutrient medium allows the cultivation of a maximum number of microorganisms superior to that of the prototype, both with the addition of erythrocytes of the blood of a ram or human blood or serum and without them.


Bacteria Growth Rate

In addition, a comparison with the prototype of the composition of the components as of Example 12 of the claimed nutrient medium with respect to the growth time of the grown colonies of microorganisms was performed on a liquid nutrient medium with the composition of the components in accordance with Examples 14, 15, 18, 19, 22, and 23. In the medium, 10 strains of various bacteria were sown (the mixture included various strains of staphylococci, Escherichia coli, microcroc, corynebacterium, salmonella, pseudomonas, proteus, bacilli). The results of the comparison with the prototype according to the growth time of the grown colonies of microorganisms are given in Table 3.


Analysis of the results shown in Table 3 showed that the declared nutrient medium allows obtaining the maximum variety of microorganisms in the material under study, after 8 hours of growth, while on the prototype medium the appearance of the maximum number of morphotypes was recorded only after 12 hours of growth.


Efficacy of Using a Nutrient Medium to Extract Bacteria from a Pathological Material

The tested material was sown on a nutrient medium with the composition of the components as in Examples 2-11, 13-23. As a comparison, a medium selected as a prototype with the composition of the components as of Example 12 was used. The samples were incubated at 37° C. for 24 hours.


Metagenomic Analysis

Extraction of DNA.


DNA extraction from the pathological material and bacteria grown on the medium was carried out using a standard QIAamp DNA Mini Kit (QIAGEN) according to the available protocol.


Amplification was performed using eubacterial primers 27F-534R flanking the hypervariable region of the 16S rRNA gene.











27F:



′5-AGAGTTTGATYMTGGCTCAG-3′







534R:



′5-ATTACCGCGGCTGCTGG-3′.






The pair of oligonucleotide primers used in the work is specific to the conserved sections of the 16S rRNA gene and is used in metagenomic studies to detect the bacterial diversity of various communities [Dong, Qunfeng, et al. “The microbial communities in male first catch urine are highly similar to those in paired urethral swab specimens.” PLoS One 6.5 (2011): e19709. Petrosino, Joseph F., et al. “Metagenomic pyrosequencing and microbial identification.” Clinical Chemistry 55.5 (2009): 856-866].


Metagenomic sequencing of the fragment of the 16S rRNA gene was performed on a Roche/454 Genome Sequencer FLX Titanium pyrosequencer. The maximum length of the sequences obtained was 507 nucleotides; chimeric sequences and sequences shorter than 300 nucleotides were not included in the analysis.


Analysis of Diversity and Taxonomic Composition

Each sequence obtained during pyrosequencing was identified by comparison with the sequences of the GenBank and EzTaxon databases using the BLASTN search algorithms and pairwise comparison. To determine the species diversity, the taxonomic composition and for comparison of communities, the Pyrosequencing pipeline (http://pyro.cme.msu.edu) was used. The resulting sequences were aligned and cluster analysis was performed using the Complete Linkage Clustering program, which is part of the Pyrosequencing pipeline. Clustering was performed at different levels characterized by different distances between clusters (from 0 to 0.25 in 0.01 increments). The isolation of the filotypes (OTU) was carried out at a cluster distance of 0.03; assessment of the taxonomic complexity of communities was carried out at levels of differences corresponding to the following taxa: species—0.03, genus—0.05, family—0.1, using Rarefaction program (Pyrosequencing pipeline). To characterize the taxonomic composition of communities, a cluster analysis was carried out. Next, the same was carried out for each cluster, by means of Dereplicate Request program for the nucleotide sequence corresponding to the cluster center having the minimum sum of squares of distances to the other sequences in the cluster. Representative cluster sequences were taxonomically classified. Classification of species at all stages of work was carried out on the basis of the genotypic approach in accordance with the international code of the nomenclature of bacteria (ICNB). If the representative sequence had a homology of more than 97% with the sequence of the validated microorganism, the cluster was assigned to the corresponding species.


Bacteria in Urine

As a result of pyrosequencing, a significant species diversity of bacteria was found in the urine sample, where one order, one family, and four Enterobacteriales species were detected. In the pathological material, microorganisms of four genera of the Enterobacteriales order were found. The species of microorganisms occurring in the urine isolated on a nutrient medium with the composition of the components according to Examples 2-11, 13-23, are shown in Table 4.


On the medium selected as a prototype with the composition of the components according to Examples 1 and 12, the growth of bacteria of only one species identified as Escherichia coli was obtained.


While on the declared nutrient medium with the composition of the components in all the examples as a result of the studies almost 100% coincidence of the microorganism species giving growth on the declared medium in comparison with the urine species was obtained from the metagenomic analysis, which indicates a high efficiency of the claimed nutrient medium to ensure the growth of the entire diversity of bacteria that occur in the pathological material of the type being studied.


Bacteria in Traumatic Discharge

As a result of pyrosequencing, a significant species diversity of bacteria was found in the traumatic detachable, which includes bacteria belonging to one order, one family, and 8 species. In the pathological material, the number of sequences was dominated by bacteria of the order of Enterobacteriales. The species of microorganisms occurring in the traumatic detachable isolated on a nutrient medium with the composition of the components according to Examples 2-11, 13-23, are shown in Table 5.


On the medium selected as a prototype with the composition of the components according to Examples 1 and 12, the growth of bacteria of only one species identified as Klebsiella oxytoca was obtained.


While on the declared nutrient medium with the composition of the components in all the examples as a result of the studies almost 100% coincidence of the microorganism species giving growth on the declared medium in comparison with the traumatic discharge species was obtained from the metagenomic analysis, which indicates a high efficiency of the claimed nutrient medium to ensure the growth of the entire diversity of bacteria that occur in the pathological material of the type being studied.


Detection of a large number of bacteria of different species of the same genus during metagenomic analysis indicates the presence of bacteria with an unexplored genome, i.e. related to the group of unknown, yet not cultivated bacteria.


Bacteria in Sputum

As a result of pyrosequencing, a significant species diversity of bacteria in sputum was detected, which includes the following microorganisms: 7 orders, 8 families, 15 species. In the pathological material, the number of sequences was dominated by bacteria of the two orders: Pseudomonadales and Burkholderiales. In the sputum the representation of Pseudomonadales and Burkholderiales was 88.3% and 8.5%. Isolated on a nutrient medium with the composition of the components according to Examples 2-11, 13-23, the species of microorganisms occurring in the sputum are shown in Table 6.


On the medium selected as a prototype with the composition of the components according to Examples 1 and 12, the growth of bacteria of only one species identified as Staphylococcus epidermidis was obtained.


While on the declared nutrient medium with the composition of the components in all the examples as a result of the studies almost 100% coincidence of the microorganism species giving growth on the declared medium in comparison with the sputum species was obtained from the metagenomic analysis, which indicates a high efficiency of the claimed nutrient medium to ensure the growth of the entire diversity of bacteria that occur in the pathological material of the type being studied.


INDUSTRIAL APPLICABILITY

The invention can be implemented using common constructional materials and equipment, resulting, according to the applicant's opinion, in compliance of the invention with the “Industrial Applicability” (“IA”) patentability criterion.


Embodiments

1. The nutrient media for cultivating bacteria including pancreatic digest of casein, pepsin digest of meat, pancreatic digest of a heart, yeast extract, starch and water, characterized in that it additionally contains violuric acid and beef infusion, with the following ratio of components (wt %):


pancreatic digest of casein—0.3-1.0;


pepsin digest of meat—0.1-1.5;


pancreatic digest of a heart—0.1-0.9;


yeast extract—0.1-2.0;


starch—0.3-0.8;


infusion of beef—2.0-15;


violuric acid—0.001-0.05;


water—the rest.


2. The nutrient medium according to embodiment 1, characterized in that it additionally contains agar-agar (0.3-2.5 wt %).


3. The nutrient medium according to embodiment 1 or 2, characterized in that it additionally contains horse blood serum—1-15 wt %. 4. The nutrient medium according to embodiment 1 or 2, characterized in that it additionally contains erythrocytes of ram blood—1-20 wt %.


5. The nutrient medium according to embodiment 4 characterized in that it additionally contains hemolyzed erythrocytes of ram blood—1-20 wt %.


6. The nutrient medium according to embodiment 1 or 2, characterized in that it additionally contains erythrocytes of human blood—1-20 wt %.


7. The nutrient medium according to embodiment 6 characterized in that it additionally contains hemolyzed erythrocytes of human blood—1-20 wt %.









TABLE 1







Number of different bacteria grown on claimed


nutrient media supplemented with agar-agar












Number of





different bacteria
Number of different


#

in the artificial
bacteria grown on


Example
Nutrient media. Mass %
mixture
nutrient medium


1
2
3
4













1
Prototype:
25
10



pancreatic casein digest - 0.5



pepsin meat digest -1



heart pancreatic digest - 0.5



yeast extract -0.15



starch - 0.5



water - 97.35


2
Media according to embodiment 1:
25
14



pancreatic casein digest - 0.3



pepsin meat digest-0.1



heart pancreatic digest - 0.1



yeast extract - 0.1



starch 0.3



vialuric acid - 0.001



beef tincture - 2.0



water - 97.099


3
Media according to embodiment 2:
25
17



pancreatic casein digest - 1.0



pepsin meat digest - 1.5



heart pancreatic digest - 0.9



yeast extract - 2.0



starch - 0.8



vialuric acid - 0.05



beef tincture - 15.0



agar-agar - 0.3



water - 78.45


4
Media according to embodiment 3:
25
21



pancreatic casein digest - 0.5



pepsin meat digest - 0.5



heart pancreatic digest - 0.5



yeast extract - 0.5



starch - 0.5



vialuric acid - 0.01



beef tincture - 8.0



agar-agar - 0.8



horse serum - 5.0



water - 83.69


5
Media according to embodiment 3:
25
22



pancreatic casein digest - 0.8



pepsin meat digest-1.2



heart pancreatic digest - 0.8



yeast extract - 1.5



starch - 0.8



vialuric acid - 0.04



beef tincture - 12.0



agar-agar - 2.2



horse serum - 15.0



water - 65.66


6
Media according to embodiment 4:
25
21



pancreatic casein digest - 0.9



pepsin meat digest 1.0



heart pancreatic digest - 0.7



yeast extract - 1.0



starch - 0.6



vialuric acid - 0.04



beef tincture - 10.0



agar-agar - 1.2



non-hemolyzed lamb - erythrocytes - 1.0



water - 83.56


7
Media according to embodiment 5:
25
21



pancreatic casein digest - 0.6



pepsin meat digest - 0.8



heart pancreatic digest - 0.4



yeast extract - 0.7



starch - 0.4



vialuric acid - 0.03



beef tincture - 7.0



agar-agar - 0.9



hemolyzed lamb erythrocytes - 5.0



water - 84.17


8
Media according to embodiment 5:
25
22



pancreatic casein digest - 0.6



pepsin meat digest - 0.8



heart pancreatic digest - 0.4



yeast extract - 0.7



starch - 0.4



vialuric acid - 0.03



beef tincture - 7.0



agar-agar - 0.9



hemolyzed lamb erythrocytes - 20.0



water - 69.17


9
Media according to embodiment 6:
25
20



pancreatic casein digest - 0.9



pepsin meat digest- 1.0



heart pancreatic digest - 0.7



yeast extract - 1.0



starch - 0.6



vialuric acid - 0.04



beef tincture - 10.0



agar-agar - 1.2



non-hemolyzed human erythrocytes - 1.0



water - 83.56


10
Media according to embodiment 7:
25
21



pancreatic casein digest - 0.6



pepsin meat digest - 0.8



heart pancreatic digest - 0.4



yeast extract - 0.7



starch - 0.4



vialuric acid -0.03



beef tincture - 7.0



agar-agar - 0.9



hemolyzed human erythrocytes - 5.0



water - 84.17


11
Media according to embodiment 7:
25
22



pancreatic casein digest - 0.6



pepsin meat digest- 0.8



heart pancreatic digest - 0.4



yeast extract - 0.7



starch - 0.4



vialuric acid - 0.03



beef tincture - 7.0



agar-agar - 0.9



hemolyzed human erythrocytes - 20.0



water - 69.17
















TABLE 2







Number of different bacteria grown on claimed liquid nutrient media












Number of





different bacteria
Number of different


#

in the artificial
bacteria grown on


Example
Nutrient media. Mass %
mixture
nutrient medium


1
2
3
4













12
Prototype:
12
7



pancreatic casein digest - 1.0



pepsin meat digest - 1.4



heart pancreatic digest - 0.9



yeast extract - 1.5



starch - 0.8



water - 94.4


13
Media according to embodiment 1:
12
9



pancreatic casein digest - 1.0



pepsin meat digest- 1.5



heart pancreatic digest - 0.9



yeast extract - 2.0



starch - 0.8



vialuric acid - 0.05



beef tincture - 15.0



water - 78.75


14
Media according to embodiment 3:
12
10



pancreatic casein digest - 0.5



pepsin meat digest - 0.5



heart pancreatic digest - 0.5



yeast extract - 0.5



starch - 0.5



vialuric acid - 0.01



beef tincture - 8.0



horse serum - 1.0



water - 88.49


15
Media according to embodiment 3:
12
10



pancreatic casein digest - 0.5



pepsin meat digest - 0.5



heart pancreatic digest - 0.5



yeast extract - 0.5



starch - 0.5



vialuric acid - 0.01



beef tincture - 8.0



horse serum - 5.0



water - 84.49


16
Media according to embodiment 4:
12
10



pancreatic casein digest - 0.9



pepsin meat digest - 1.0



heart pancreatic digest - 0.7



yeast extract - 1.0



starch - 0.6



vialuric acid - 0.04



beef tincture 10.0



non-hemolyzed lamb erythrocytes - 5.0



water - 80.76


17
Media according to embodiment 4:
12
10



pancreatic casein digest - 0.4



pepsin meat digest- 0.8



heart pancreatic digest - 0.2



yeast extract - 0.8



starch - 0.4



vialuric acid - 0.04



beef tincture - 5.0



non-hemolyzed lamb erythrocytes - 20.0



water - 72.36


18
Media according to embodiment 5:
12
10



pancreatic casein digest - 0.9



pepsin meat digest - 1.2



heart pancreatic digest - 0.7



yeast extract - 1.7



starch - 0.7



vialuric acid - 0.04



beef tincture - 12.0



hemolyzed lamb erythrocytes - 1.0



water - 81.76


19
Media according to embodiment 5:
12
10



pancreatic casein digest - 0.6



pepsin meat digest - 0.8



heart pancreatic digest - 0.4



yeast extract - 0.7



starch - 0.4



vialuric acid 0.03



beef tincture - 7.0



hemolyzed lamb erythrocytes - 10.0



water - 80.07


20
Media according to embodiment 6:
12
10



pancreatic casein digest - 0.9



pepsin meat digest - 1.0



heart pancreatic digest - 0.7



yeast extract - 1.0



starch - 0.6



vialuric acid - 0.04



beef tincture - 10.0



non-hemolyzed human erythrocytes - 5.0



water - 80.76


21
Media according to embodiment 6:
12
10



pancreatic casein digest - 0.4



pepsin meat digest - 0.8



heart pancreatic digest - 0.2



yeast extract - 0.8



starch - 0.4



vialuric acid - 0.04



beef tincture - 5.0



non-hemolyzed human erythrocytes - 20.0



water - 72.36


22
Media according to embodiment 7:
12
10



pancreatic casein digest - 0.9



pepsin meat digest 1.2



heart pancreatic digest - 0.7



yeast extract - 1.7



starch - 0.7



vialuric acid - 0.04



beef tincture - 12.0



hemolyzed human erythrocytes - 1.0



water - 81.76


23
Media according to embodiment 7:
12
10



pancreatic casein digest - 0.6



pepsin meat digest - 0.8



heart pancreatic digest - 0.4



yeast extract - 0.7



starch - 0.4



vialuric acid - 0.03



beef tincture - 7.0



hemolyzed human erythrocytes -10.0



water - 80.07
















TABLE 3







Number of different morphotypes of grown colonies of


microorganisms at different time-points









Number of identified morphotypes of grown



colonies of microorganisms


Nutrient media
Time of growth (hours)














# example
2
4
6
8
12
18
24

















1
2
3
4
5
6
7
8


Prototype: Example 12
0
2
4
6
7
7
7


Media according to
0
4
8
10
10
10
10


embodiment 3:


Example 14


Media according to
0
4
8
10
10
10
10


embodiment 5 or 7:


Example 18 or 22


Media according to
0
6
8
10
10
10
10


embodiment 3:


Example 15


Media according to
0
6
8
10
10
10
10


embodiment 5 or 7:


Example 19 or 23
















TABLE 4







Isolated bacteria that could be found in urine











Pathological material,
Claimed nutrient



Classification
urine
media
Prototype





Order
Enterobacteriales
Enterobacteriales
Enterobacteriales


Family
Enterobacteriaceae
Enterobacteriaceae
Enterobacteriaceae


Species

Escherichia coli


Escherichia coli


Escherichia coli





Shigella spp


Shigella spp





Enterbacter cloacae


Enterbacter cloacae





Enterobacter hormaechei


Enterobacter hormaechei

















TABLE 5







Isolated bacteria that could be found in wound exudate (wound fluid)











Pathological material,





wound exudate (wound
Claimed nutrient


Classification
fluid)
media
Prototype





Order
Enterobacteriales
Enterobacteriales
Enterobacteriales


Family
Enterobacteriaceae
Enterobacteriaceae
Enterobacteriaceae


Species

Enterobacter aerogens


Enterobacter aerogens


Klebsiella oxytoca





Enterobacter asburiae


Enterobacter asburiae





Enterobacter cancerogenus


Enterobacter cancerogenus





Enterobacter cloacae


Enterobacter cloacae





Enterobacter hormaechei


Enterobacter hormaechei





Klebsiella oxytoca


Klebsiella oxytoca





Klebsiella pneumoniae


Klebsiella pneumoniae





Pantoea aggloerans


Pantoea aggloerans

















TABLE 6







Isolated bacteria that could be found in mucous











Pathological material,
Claimed nutrient



Classification
mucous
media
Prototype


1
2
3
4





Order
Bacillales
Bacillales
Bacillales



Pseudomonales
Pseudomonales



Clostridiales
Clostridiales



Actinomycetales
Actinomycetales



Lactobacillales
Lactobacillales



Burkholderiales
Burkholderiales



Sphingomonadales
Sphingomonadales


Family
Staphylococcaceae
Staphylococcaceae
Staphylococcaceae



Corynebacteriuaceae
Corynebacteriuaceae



Streptococcaceae
Streptococcaceae



Pseudomonadaceae
Pseudomonadaceae



Alcaligenaceae
Alcaligenaceae



Carnobacteriaceae
Carnobacteriaceae



Sphingomonadaceae
Sphingomonadaceae



Oxalobacteraceae
Oxalobacteraceae


Species

Staphylococcus epidermididis


Staphylococcus epidermididis


Staphylococcus epidermididis





Lactobacillus rhamnosus


Lactobacillus rhamnosus





Pseudomonas sp


Pseudomonas sp





Pseudomonas aeruginosa


Pseudomonas aeruginosa





Achromobacter insolitus


Achromobacter insolitus





Achromobacter xylosoxidans


Achromobacter xylosoxidans





Achromobacter sp


Achromobacter sp





Granulicatella adiacens


Granulicatella adiacens





Sphingomonas sp


Sphingomonas sp





Streptococcus sp


Streptococcus sp





Hebaspirillum sp


Hebaspirillum sp





Corynebacterium striatum


Corynebacterium striatum





Granulicatella adiacens


Granulicatella adiacens





Achromobacter denitrificans


Achromobacter denitrificans









Claims
  • 1. A nutrient media for cultivating bacteria comprising a pancreatic digest of casein, pepsin digest of meat, pancreatic digest of a heart, yeast extract, starch, water, violuric acid, beef infusion, in the following ratio of components: 0.3-1.0 wt % pancreatic digest of casein;0.1-1.5 wt % pepsin digest of meat;0.1-0.9 wt % pancreatic digest of a heart;0.1-2.0 wt % yeast extract;0.3-0.8 wt % starch;2.0-15 wt % infusion of beef;0.001-0.05 wt % violuric acid; andwater—the rest.
  • 2. The nutrient medium according to claim 1, further comprising 0.3-2.5 wt % agar-agar.
  • 3. The nutrient medium according to claim 2, further comprising 1-15 wt % horse blood serum.
  • 4. The nutrient medium according to claim 2, further comprising 1-20 wt % erythrocytes of ram blood.
  • 5. The nutrient medium according to claim 2 further comprising 1-20 wt % erythrocytes of human blood.
  • 6. The nutrient medium according to claim 1, further comprising 1-15 wt % horse blood serum.
  • 7. The nutrient medium according to claim 1, further comprising 1-20 wt % erythrocytes of ram blood.
  • 8. The nutrient medium according to claim 7, further comprising 1-20 wt % hemolyzed erythrocytes of ram blood.
  • 9. The nutrient medium according to claim 1, further comprising 1-20 wt % erythrocytes of human blood.
  • 10. The nutrient medium according to claim 9, further comprising 1-20 wt % hemolyzed erythrocytes of human blood.
Priority Claims (1)
Number Date Country Kind
2015124601 Jun 2015 RU national
PCT Information
Filing Document Filing Date Country Kind
PCT/RU2016/000383 6/23/2016 WO 00
Publishing Document Publishing Date Country Kind
WO2016/209117 12/29/2016 WO A
US Referenced Citations (18)
Number Name Date Kind
2533088 Brewer et al. Apr 1949 A
3728461 Douros, Jr. et al. Apr 1973 A
5789173 Peck et al. Aug 1998 A
6153400 Matsumura et al. Nov 2000 A
6280946 Hyldig-Nielsen et al. Aug 2001 B2
6984499 Chen et al. Jan 2006 B2
7262021 Taintor Aug 2007 B1
8753875 Frimodt-Moller Jun 2014 B2
20020076742 Chen et al. Jun 2002 A1
20040018585 Crouteau et al. Jan 2004 A1
20080318268 Olson et al. Dec 2008 A1
20090068696 Frimodt-Moller Mar 2009 A1
20090310839 Katzenelson et al. Dec 2009 A1
20110269130 Shi et al. Nov 2011 A1
20110318814 Kshirsagar et al. Dec 2011 A1
20120329675 Olsen et al. Dec 2012 A1
20140170671 McGarr et al. Jun 2014 A1
20150284764 Tets et al. Oct 2015 A1
Foreign Referenced Citations (19)
Number Date Country
7596 Oct 2011 BY
203904353 Oct 2014 CN
104313116 Jan 2015 CN
H1066598 Mar 1998 JP
2061032 May 1996 RU
2231554 Jun 2004 RU
2262533 Oct 2005 RU
2006111133 Oct 2007 RU
69066 Dec 2007 RU
2319746 Mar 2008 RU
127749 May 2013 RU
2505813 Jan 2014 RU
9500112 Jan 1995 WO
1996028570 Sep 1996 WO
1999018232 Apr 1999 WO
2004050675 Jun 2004 WO
2009026920 Mar 2009 WO
2011009213 Jan 2011 WO
2014074012 May 2014 WO
Non-Patent Literature Citations (39)
Entry
Moore, J. Gen. Microbiol., 1968, 53:415-423.
Balashova, Infection and Immunity, 2006, 74(4):2015-2021.
Abdou, ARKIVOC, 2007, 45-60.
Communication issued by the United States Patent and Trademark Office in U.S. Appl. No. 14/439,717, dated Sep. 12, 2017.
Communication issued by the United States Patent and Trademark Office in U.S. Appl. No. 14/439,717, dated Mar. 15, 2018.
Office Action issued by the United States Patent and Trademark Office in U.S. Appl. No. 15/039,966, dated Jun. 5, 2018.
European Communication Pursuant to Article 94(3) EPC issued by the European Patent Office in European Application No. 13 853 343.5, dated May 24, 2018, 5 pages total.
Funk, D.J. et al., “Antimicrobial Therapy for Life-Threatening Infections: Speed is Life” Critical Care Clinics (2011) vol. 27, pp. 53-76.
Hellenkamp, K. et al., “Early Pneumonia and Timing of Antibiotic Therapy in Patients After Nontraumatic Out-of-Hospital Cardiac Arrest” Critical Care (2016) vol. 20, No. 31, 10 pages total.
Birger, M.O., Spravochnik po rnil<robiologichesk.lm i virusologicheskim rnetodam issledovaniya, Ivloskva, Medicina, 1973. pp. 177-178 and English Translation thereof.
Blood Agar, Thermofisher 2008, accessed at: https://tools.thermofisher.com/content/sfs/manuals/IFU1200.pdf.
Dong, Qunfeng et al., “The microbial communities in male first catch urine are highly similar to those in paired urethral swab specimens.” PLoS One 6.5 (2011): el9709.
Ellner, P.D. et al., “A New Culture Medium for Medical Bacteriology” The American Journal of Clinical Pathology (1966) vol. 45, No. 4, pp. 502-504.
Epstein S.S., “General model of microbial uncultivability in uncultivated microorganisms”, Series: Microbiology Monographs, Springer, 2009, p. 131-150.
European Communication issued by the European Patent Office in European Patent Application No. 13853343.5, dated Nov. 13, 2017, 5 pages total.
European Communication Pursuant to Rules 70(2) and 70a(2) EPC, Extended/Supplementary European Search Report Issued in EP13853343.5, dated Jun. 23, 2016, 7 pages.
European Extended Search Report issued in EP14866121.8, dated Apr. 28, 2018, 9 pages total.
Ghannoum, Mahmoud A. et al., “Characterization of the oral fungal microbiome (mycobiome) in healthy individuals.” PLoS pathogens 6.1 (2010): e1000713.
International Preliminary Report on Patentability and Written Opinion (including translation) issued by the International Searching Authority in International Patent Application No. PCT/RU2016/000383, dated Dec. 26, 2017, 9 pages total.
International Preliminary Report on Patentability Issued in PCT/RU2013/000394 dated May 12, 2015, 4 pages and English Translation Thereof.
International Preliminary Report on Patentability Issued in PCT/RU2014/000810 dated May 31, 2016, 5 pages and English Translation Thereof.
International Search Report (including translation) issued by the International Searching Authority in International Patent Application No. PCT/RU2016/000383, dated Oct. 20, 2016, 3 pages total.
International Search Report and Written Opinion Issued in PCT/RU2013/000394 dated Dec. 12, 2013, 11 pages and English Translation Thereof.
International Search Report and Written Opinion issued in PCT/RU2014/000810, dated Jan. 15, 2015, 12 pages and English Translation Thereof.
Isenberg H.D., Essential Procedures for Clinical Microbiology, ASM-PRESS (1998), pp. 208-215, 216-223, and pp. 235-240.
Korotchenko, H.M. et al., “Izuchenie Ustoichivosti Violuratnykh Kompleksov Nekotorykh D-i F-metallov” Zhurnal Neorganicheskoi Khimii (2012) vol. 57, No. 1, pp. 141-147.
Lagace-Wiens, P.R.S. et al., “Treatment of lower urinary tract infection caused by multidrug-resistant extended-spectrum-β-lactamase-producing Escherichia coli with amoxicillin/clavulanate: case report and characterization of the isolate” Journal of Antimicrobial Chemotherapy (2006), 57(6):1262-1263.
Lewis K. et al., “Persisters, biofilms, and the problem of culturability in incultivated microorganisms”, Series: Microbiology Monographs, Springer, 2009, p. 181-194.
Oliver, J.D., “Recent Findings on the Viable but Nonculturable State in Pathogenic Bacteria” (2010) FEMS Microbiology Reviews (2010) vol. 34, pp. 415-425.
Opredelenie chuvstvitelnosti rnikroorganizmov k antibakterialnym preparatam, metodicheskie rekomendatsii, klinicheskaya Mikrobiologiya Antimikrobnaya Knimioterapiya (2004), vol. 06:04: p. 311-312 and English Translation thereof titled “Determination of the sensitivity of microorganisms to antibiotics”.
Petrosino, J.F. et al., “Metagenomic Pyrosequencing and Microbial Identification” Clinical Chemistry (2009) vol. 55, No. 5, pp. 856-866.
Poliak, M.C. et al., “Pitatelnye Sredy Dlia Meditsinskoi Mikrobiologii” St. Petersburg (2002), 80 pages total.
US Food and Drug Administration “Chapter 3: Types of Devices and Predictive Device” in: “Guidance for Industry and for FDA Reviewers Guidance on review Criteria for Assessment of Antiicrobial Susceptibility Devices” (1991), US Department of Health and Human Services, Washington DC USA, XP055364834, pp. 1-22.
Zhou, Xia, et al. “The vaginal bacterial communities of Japanese women resemble those of women in other racial groups,” FEMS Immunology & Medical Microbiology 58.2 (201 0): 169-181.
Bhadange, Y. et al., “Role of Liquid Culture Media in the Laboratory Diagnosis of Microbial Keratitis” American Journal of Ophthalmology (2013) vol. 156, No. 4, pp. 745-751.
Database WPI Week 201524 XP002785443, Thomson Scientific (2015) 1 page total.
European Communication (Communication pursuant to Article 94(3) EPC) issued in EP13853343.5, dated Oct. 10, 2018.
European Communication (Extended European Search Report) issued by the European Patent Office in European Patent Application No. 16814798.1, dated Oct. 24, 2018.
Li, L. et al., “The Importance of the Viable but Non-Culturable State in Human Bacterial Pathogens” Frontiers in Microbiology (2014) vol. 5, Article 258, pp. 1-20.
Related Publications (1)
Number Date Country
20190382713 A1 Dec 2019 US