Patent Grant
7419818
1. Field of the Invention
The present invention relates to an organic conductor having an improved DNA conductivity which allows a DNA to be utilized as an electronic material.
2. Description of the Related Art
A deoxyribonucleic acid (DNA) defined by Watson and Crick has a unique double-helix structure consisting of pairs of four bases including adenine, cytosine, guanine and thymine and ribose phosphate chains. Originally, a DNA is a substance, which constitutes a chromosome in a nucleus of an organism, and has a function for replicating and transmitting genetic information of a life by recording main genetic information in the base sequence of a DNA. The error rate in the transcription of a DNA is very low, and is thought to be several thousand times smaller than the error rate of an ordinary magnetic memory disk (10−4%). In addition, the thickness of a DNA is only about 2 nm, but a DNA present in a nucleus of a cell has a length of about several meters when being extended and an extremely high dynamic toughness.
Since such a DNA has an almost one-dimensional geometric structure, it is being paid attention also as a low-dimensional transmitting substance. If a DNA can be employed on an electronic circuit, it can serve as a minute circuit element which can achieve an accumulation level exceeding that of a conventional silicon device circuit. Accordingly, the use of a DNA as an electronic device material is increasingly being discussed, and attention is focused particularly on the electric conductivity of the DNA. However, the level at which a DNA allows the electricity to flow is not known accurately, and is presently still being discussed.
As described above, the results of the prior studies have not been successful in determining even whether a DNA is a conductor or not, and no accurate conductivity has been measured. Accordingly, there were no technologies by which the electricity is supplied efficiently to a DNA.
Accordingly, an object of the present invention is to provide a technology enabling a supply of electricity to a DNA which is essential for realizing an electronic device using the DNA.
According to such condition, the present inventor has studied extensively, and finally discovered that an organic polymer formed by binding an electric charge-donating material to a DNA has a high electric conductivity and is stable chemically and thermally, thereby achieving the invention.
Thus, a first aspect of the invention provides an organic conductor comprising a deoxyribonucleic acid (DNA); and an electric charge-donating material bonded to the deoxyribonucleic acid (DNA).
A second aspect of the invention provides an organic conductor comprising at least two DNAs; and an electric charge-transfer substance bonding to each base of the two DNAs.
An organic conductor of the invention allows a DNA for the first time to have a conductivity, and enables the realization of an electric charge separation state in a single molecule, which is very useful industrially for the purpose of actuating a molecular level electronic device.
The present invention is a DNA imparted with an electric conductivity by binding it with an electric charge-donating material. The DNA employed in the invention is not limited particularly, and may be any of a single-stranded to quadruple-stranded DNAs and also may a DNA having a trifurcate or tetrafurcate branching structure. While the number of the bases is not limited, it is preferably 2 to 100,000.
An electric charge-donating material employed in the invention serves to inject a hole or an electron into a DNA. Since the electric charge-donating material employed here bonds to the DNA, it is preferable that the electric charge-donating material bonds specifically to a base of the DNA. While an electric charge-generating substance itself serves as an electric charge-donating material if the electric charge-generating substance bonds directly to a base, the electric charge-donating material preferably contains an electric charge-transfer substance capable of bonding to a base and an electric charge-generating substance when it is difficult for the electric charge-generating substance to bond directly to the base.
When an electric charge-donating material bonds specifically to a desired base of a DNA, then the conductivity can be controlled based on the base sequence constituting a DNA and the bonding site between DNAs and the number of the bondings can also be controlled. For example, a cis-platin-containing electric charge-donating material described below bonds specifically to guanine, whereby enabling the control as mentioned above. The DNA employed here may be a naturally occurring one whose sequence, number or base position is known to a certain degree required for its utilization, or may be an artificial one whose sequence is designed.
An electric charge-transfer substance employed in the invention is a substance capable of transmitting a hole or electron generated in an electric charge-generating substance to a DNA. The electric charge-transfer substance may for example be a metal complex, and preferably a platinum complex. Such a platinum complex is preferably a carcinostatic platinum complex (cis-platinum (II) diamine dichloride (hereinafter abbreviated as cis-platin), cis-[Pt(NH3)2Cl4], trans-DDP, [Pt(dien)Cl]+, carboplatin, CHIP (iproplatin), DACCP, malonatoplatinum and the like as shown below.
An electric charge-generating substance may, for example, be an amine compound, particularly one in which the number of amine groups is 1 to 100 per molecule of the amine compound, and more preferably a water-soluble amine. Those preferred particularly are CONGO RED, pararosanilin, thionine, porphyrin and the like as shown below.
When an electric charge-transfer substance capable of bonding to a base cannot be bonded directly to an electric charge-generating substance, then they may be bonded to each other via a crosslinking agent. Such a crosslinking agent is preferably a water-soluble crosslinking agent, particularly a water-soluble isothiocyanate represented by Formula 1 (4,4′-diisothiocyano-2,2′-stilbenedisulfonic acid disodium salt (hereinafter abbreviated as DIDS), 4-acetamido-4′-isothiocyanostilbene-2,2′-disulfonic acid disodium salt and the like), succinic acid imide ester represented by Formula 2 (ethylene glycol-O,O′-bis(succinimidyl) succinate (hereinafter abbreviated as EGS).
While an organic conductor of the invention may be in a form obtained simply by binding an electric charge-donating material to a deoxyribonucleic acid (DNA), it may be in a form in which 2 or more DNAs are crosslinked with the electric charge-donating material. Thus, the form may be DNA-electric charge-donating material-DNA, or a repeating structure such as DNA-electric charge-donating material-DNA-electric charge-donating material-DNA-. The number of DNAs in such a crosslinking structure may be 2 to 100,000.
The invention is further detailed by exemplifying an inventive organic conductor having a crosslinking structure. This has a structure shown in
A further description is made below with exemplifying a substance DNA/cis-platin/DIDS/CONGO RED/DIDS/cis-platin/DNA (hereinafter abbreviated as A-1) (see
This substance allows the electric charge to be separated in a CONGO RED molecule to form a hole which is transmitted by the conjugated double bond and a phenyl group in DIDS, followed by an injection of the hole specifically to a guanine group of a DNA by means of cis-platin bonded to the guanine base of the DNA, whereby accomplishing the transmission of the hole in the DNA molecule chain. The reasons why the hole can readily be injected at the guanine base site of the DNA is the fact that the oxidation potential of the guanine is lower than those of other three bases (adenine, cytosine, thymine). The oxidation potential of each base, relative to hydrogen electrode potential, is 1.49 V for guanine, 1.96 V for adenine, 2.14 V for cytosine, 2.11 V for thymine as reported by C. A. M. Seidel et al. (Journal of Physical Chemistry, vol. 100, pp. 5541 to 5553, 1996, p. 5544, Table 2). As a result, the conductivity of the substance of the invention can be improved.
Generally, the electric resistance of a DNA is extremely high, and the conductivity cannot be dramatically improved even if an organic dye or the like capable of generating an electric charge in a molecule is intercalated. Nevertheless, it can be interpreted that when a hole is injected specifically to a guanine base to increase the electric charge concentration in the DNA then the electric charge in the DNA is transferred, whereby allowing the current to run more easily. On the other hand, when the electric charge is an electron, the electron is injected into cytosine or thymine.
Since A-1 has two bonding sites which are equivalent for all molecules and which are also symmetrical chemically, it can form a complicated crosslinking structure using a DNA as a backbone chain. Thus, a structure: DNA/cis-platin/ DIDS/CONGO RED/DIDS/cis-platin/DNA can be considered. Such a structure allows the thermal resistance of the substance to be improved to give a thermal decomposition temperature as high as about 450° C. or higher under nitrogen atmosphere, whereby having an extremely high chemical stability.
On the other hand, an ordinary conductive polymer such as a polyacetylene or polypyrrole becomes instable readily by an atmospheric oxidation, and requires a chemically instable iodine and the like as a dopant for generating the conductivity. On the contrary, A-1 of the invention does not require a dopant for generating the conductivity, is stable under atmosphere, and exhibits no change in the characteristics even after being allowed to stand at room temperature under atmosphere for 1 month after production.
It is a matter of course that a substance forming no crosslinking structure can also be considered, such as a DNA/cis-platin/DIDS bonded at its tip to a monoamine dye, in which no crosslinking structure is formed and a fibrous DNA structure is preserved. The reaction is not limited to a reaction only with DNAs, and a DNA molecule can be bonded to a protein molecule via cis-platin/DIDS/(diamine compound)/DIDS/.
Since CONGO RED has an absorption wavelength of about 570 nm and gives almost no fluorescence, it can be employed also as an electric charge-generating material. Accordingly, the synthesized A-1 can constitute an extremely stable photosensor. In addition, CONGO RED is a dyeing agent which stains an amyloid protein specifically, and the synthesized A-1 can be employed also as an electronic sensor which detects many amyloid proteins having β sheet structures (β type prions).
A structure in which 2 or more DNAs are bonded via an electric charge-transfer substance capable of bonding to a base or a structure in which such an electric charge-transfer substance capable of bonding to a base is bonded via a crosslinking agent has been proven to have a conductivity higher than that of a DNA itself. The electric charge-transfer substance and the crosslinking agent mentioned here are similar to those described above. Those which can be exemplified include a substance having a DNA/cis-platin/DIDS/cis-platin/DNA structure, which forms a crosslinking structure and has a conductivity higher than that of a DNA itself.
The invention is further described in the following Examples which are not intended to restrict the invention.
The water employed was a super-pure water (having a resistance of 1018Ω or higher) obtained by purification using a super-pure water producing instrument MILLIQ manufactured by MILLOPORE. The DNA employed was a bacteriophage λcl857 Sam7-derived λDNA (TAKARA SHUZO Co., Ltd.). The λDNA was dissolved at 0.4 mg/ml in a TE buffer (Tris: 10 mM, EDTA: 1 mM, pH=8). First, 1 ml of the λDNA buffer solution was mixed with 80 μl of a 2.5 mg/ml aqueous solution of cis-platin (Sigma-Aldrich Co.). Then 301 μl of a 1 mg/ml aqueous solution of DIDS (DOJINDO LABORATORIES) and 400 μl of a 0.5 mg/ml aqueous solution of CONGO RED (Wako Pure Chemical Industries, Ltd.) were added to the resultant mixture, and the mixture was kept at 55° C. for 3 days. The formation of the crosslinked construct represented by Formula 6 was identified on the basis of the results described below. A naturally occurring DNA has the maximum absorption wavelength of 260 nm in a UV and visible light absorption spectrum, but it is known to undergo an about 10 nm red shift of the maximum absorption wavelength when a Pt complex is bonded (Journal of the American Chemical Society, 1980, Vol. 102, pp. 5565 to 5572, Chottard et al., p. 5567, left column, line 8 from the bottom).
To purify the crosslinked construct thus synthesized, ethanol precipitation was conducted. 200 μl of the reaction solution was taken out into a sample tube, and 20 μl of a 3 mol/l aqueous solution of sodium acetate and 400 μl of ethanol were added to and mixed thoroughly with the reaction solution. After being allowed to stand at room temperature for 1 hour, the mixture was centrifuged at 4° C. and 13,200 rpm for 30 minutes to separate the supernatant and the pellet. The pellet recovered was dissolved again in 10 μl of super-pure water. A drop of this aqueous solution was added by a microsyringe onto the gold electrode formed on a glass substrate with the electrode distance of 10 μm, and dried under nitrogen atmosphere overnight. As a result, a thin film of the sample was formed on the gold electrode.
The current-voltage characteristic of this sample thin film was evaluated. The current-voltage characteristic was measured using pA METER/DC VOLTAGE SOURCE 4140B (current detection sensitivity of 10−12 A) manufactured by Hewlett Packard. The results are shown in
400 μl of a 0.32 mg/ml λ DNA buffer solution was mixed thoroughly with 12 μl of a 5 mg/ml aqueous solution of cis-platin and 300 μl of a 1 mg/ml aqueous solution of DIDS, and kept at 55° C. for 3 days. Similarly to Example 1, the crosslinked construct (A-2) shown in
Four single-stranded DNAs (hereinafter referred to as ssDNAs) of 120 bases represented by SEQ. ID. Nos. 1 to 4 were designated ssDNA1 to ssDNA4, respectively, each of which was synthesized by a phosphoramidite method using a DNA synthesizer Expedite 8909 manufactured by Applied Biosystems. There was complementarity of the base sequence between ssDNA1 and ssDNA2 and between ssDNA3 and ssDNA4, and a double-stranded DNA can be formed via hydrogen bonds by hybridization. The hybridization was effected by mixing respective ssDNAs at the molar ratio of 1:1 and the resultant mixture was kept at 97° C. for 5 minutes and then cooled to room temperature slowly. After forming a double-stranded DNA by the hybridization, ethanol precipitation was conducted for purification. A double-stranded DNA formed from ssDNA1 and ssDNA2 was designated G0, while a double-stranded DNA formed from ssDNA3 and ssDNA4 was designated G100. All regions other than the regions of 10 base pairs from the both terminals of G0 consisted of adenine-thymine base pairs. On the other hand, all region other than the regions of 10 base pairs from the both terminals of G100 consisted of guanine-cytosine base pairs. Using G100 and G0, a crosslinked construct similar to that in Example 1 was synthesized by the following procedure. 1 ml of a 0.4 mg/ml double-stranded DNA buffer solution was mixed with 80 μl of a 2.5 mg/ml aqueous solution of cis-platinum (II) diamine dichloride. Then 301 μl of a 1 mg/ml aqueous solution of DIDS and 400 μl of a 0.5 mg/ml aqueous solution of CONGO RED were added to the mixture, and the resultant mixture was kept at 55° C. for 3 days. 200 μl of the reaction solution was taken out into a sample tube, and 20 μl of a 3 mol/l aqueous solution of sodium acetate and 400 μl of ethanol were added to and mixed thoroughly with the reaction solution. After being allowed to stand at room temperature for 1 hour, the mixture was centrifuged at 4° C. and 13,200 rpm for 30 minutes to remove the supernatant and recover the pellet. To purify the crosslinked construct thus synthesized, ethanol precipitation was conducted. 200 μl of the reaction solution was taken out into a sample tube, and 20 μl of a 3 mol/l aqueous solution of sodium acetate and 400 μl of ethanol were added to and mixed thoroughly with the reaction solution. After being allowed to stand at room temperature for 1 hour, the mixture was centrifuged at 4° C. and 13,200 rpm for 30 minutes to separate the supernatant and the pellet. The pellet recovered was dissolved again in 10 μl of super-pure water. A drop of this aqueous solution was added by a microsyringe onto the gold electrode formed on a glass substrate with the electrode distance of 10 μm, and dried under nitrogen atmosphere overnight. As a result, a thin film of the sample was formed on the gold electrode.
SEQ. ID. No.: 1
Length of sequence: 120
Type of sequence: Nucleic acid
Strandedness: Single-stranded
Topology: Linear
Molecular type: Synthesized DNA
Sequence Description:
SEQ. ID. No.: 2
Length of sequence: 120
Type of sequence: Nucleic acid
Strandedness: Single-stranded
Topology: Linear
Molecular type: Synthesized DNA
Sequence Description:
SEQ. ID. No.: 3
Length of sequence: 120
Type of sequence: Nucleic acid
Strandedness: Single-stranded
Topology: Linear
Molecular type: Synthesized DNA
Sequence Description:
SEQ. ID. No.: 4
Length of sequence: 120
Type of sequence: Nucleic acid
Strandedness: Single-stranded
Topology: Linear
Molecular type: Synthesized DNA
Sequence Description:
The results of the evaluation of the current-voltage characteristics of G100 crosslinked construct and G0 crosslinked construct are shown in
Cis-platin was added to the double-stranded DNA G0 and G100 synthesized in Example 3 by the following procedure. 1 ml of a 0.4 mg/ml double-stranded DNA buffer solution was mixed with 80 μl of a 2.5 mg/ml aqueous solution of cis-platin, and the mixture was kept at 55° C. for 3 days. For the purification, ethanol precipitation was conducted. 200 μl of the reaction solution was taken out into a sample tube, and 20 μl of a 3 mol/l aqueous solution of sodium acetate and 400 μl of ethanol were added to and mixed thoroughly with the reaction solution. After being allowed to stand at room temperature for 1 hour, the mixture was centrifuged at 4° C. and 13,200 rpm for 30 minutes to remove the supernatant and recover the pellet. Similarly to Example 1, cis-platin was proven to be added to the DNA on the basis of the UV and visible light absorption spectrum. The results of the evaluation of the current-voltage characteristic using Dual Probe AFM are shown in
A DNA isolated from salmon sperm (Wako Pure Chemical Industries, Ltd.) was employed. First, the purification was conducted by ethanol precipitation. 200 μl of a 2 mg/ml DNA TE buffer solution was taken out into a sample tube, and 20 μl of a 3 mol/l aqueous solution of sodium acetate and 400 μl of ethanol were added to and mixed thoroughly with the buffer solution. After being allowed to stand at room temperature for 1 hour, the mixture was centrifuged at 4° C. and 13,200 rpm for 30 minutes to remove the supernatant. 200 μl of 70% ethanol was added to the remaining pellet, and the mixture was centrifuged at 4° C. and 13,200 rpm again for 5 minutes to remove the supernatant and recover the precipitating purified DNA. 5.6 ml of a 2 mg/ml aqueous solution of purified DNA was mixed throughly with 2.24 ml of a 2.5 mg/ml aqueous solution of cis-platinum (II) diamine dichloride and 2.24 ml of a 1 mg/ml aqueous solution of DIDS and the mixture was kept at 55° C. for 3 days. 200 μl of the reaction solution was taken out into a sample tube, and 20 μl of a 3 mol/l aqueous solution of sodium acetate and 400 μl of ethanol were added to and mixed thoroughly with the reaction solution. After being allowed to stand at room temperature for 1 hour, the mixture was centrifuged at 4° C. and 13,200 rpm for 30 minutes to remove the supernatant and recover the pellet. The thermal decomposition temperature of the crosslinked construct thus synthesized was determined using a Perkin Elmer thermal analyzer TGA-7. The resultant thermogravimetric curve is shown in
The currents of the crosslinked construct in Example 1, G100 and G0 in Example 3 were compared with each other by the method employed in Example 1. The results are shown in
| Number | Date | Country | Kind |
|---|---|---|---|
| 2001-391420 | Dec 2001 | JP | national |
This is a Division of application Ser. No. 10/325,894 filed Dec. 23, 2002 now U.S. Pat. No. 7,238,794 . The disclosure of the prior application is hereby incorporated by reference herein in its entirety.
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| Number | Date | Country | |
|---|---|---|---|
| Parent | 10325894 | Dec 2002 | US |
| Child | 11723330 | US |
