Patent Application
20230176066
The present disclosure is directed to methods and kits for performing plasmon-enhanced fluoro-dot assays. These assays enable observing a correlation between a chemical stimulus and a biological response of cultured cells in vitro.
Proteins secreted from cells act as mediators of cell-cell communication, signaling and proliferation. Extracellular proteins facilitate cell migration and differentiation in cells. Proteins secreted by cells into the extracellular space constitute 13-15% of the entire proteome and include growth factors, cytokines, chemokines, antibodies, extracellular matrix proteins, enzymes, hormones, and antimicrobial peptides. Secretory proteins facilitate essential physiological and pathological processes such as cell-to-cell communication, cell signaling, activation, inflammation, coagulation, hemostasis, differentiation, migration, toxicity, and defense. Understanding the cell secretome is essential in numerous life sciences disciplines, including immunology, oncology, neurobiology, microbiology, endocrinology, and stem cell biology.
Currently, there is limited understanding of the identity, amount and function of secreted proteins at a single cell level. The emerging field of single-cell proteomics aims to overcome the need to deduce protein expression level from cellular mRNA levels. Presently, enzyme-linked immune-assay (ELISA) and mass spectrometry (MS)-based techniques serve as gold standard techniques to detect the presence and quantify the levels of protein in cell culture media or extra-cellular matrix. However, these methods fail to resolve the spatial and temporal secretion patterns of individual cells as they provide only a measure of the average response of a cell population. It is important to map the kinetics of these systematically coordinated secretion events at an ultra-high spatial resolution.
Researchers heavily rely on samples collected from cell culture supernatants and conventional immunoassays such as ELISA to assess the changes in proteins secreted by cells after various physicochemical or biological stimuli. Naturally, the concentrations of the target proteins in cell culture supernatants represent an ensemble average of the entire cell population (in vitro), thus masking the cell-to-cell heterogeneity and, more importantly, the locoregional correlation between biophysical stimulation and biochemical response. Further, for attaining a detectable signal in ELISA, one needs to collect supernatant from thousands of cells, which have been incubated for an extended duration, typically ranging from 12 hours to several days. Implicit averaging in these methods results in loss of information related to cell-to-cell heterogeneity, cell-to-cell interaction, and the spatial distribution of secreted proteins. This particularly confounds analysis when working with cells having sub-populations and multi-modal populations. Furthermore, due to the low sensitivity of these techniques, there is little information on the kinetics of protein secretion, particularly at early time-points after stimulation and under low levels of stimulation. It is imperative to detect and measure proteins secreted at single-cell resolution without having to rely on mRNA and mass spectrometry. In more than 60% of the cases, mRNA levels do not correlate with protein abundance.
Moreover, mass spectrometry requires specialized strategies to isolate and handle single cells and expensive instrumentation and training, making it unsuitable for routine single-cell secretome analysis. Although ELISpot and FluoroSpot have emerged as powerful tools for studying protein secretions at the single-cell level, they are semi-quantitative. The assay read-out is a colored or fluorescent “spot” on a white or dark background, either counted manually or with an ELISpot reader. Each spot, which is diffused at times, indicates a protein-secreting cell, and the size of the spot provides a qualitative and often vague estimate of the amount of protein secreted by the cell. In fact, several discrepancies in terms of variability and accuracy of these assays and how the data is interpreted obligated extensive efforts to establish standardized, automated guidelines for evaluation of ELISpot assays. Further, the inherently low signal warrants the use of specialized membrane-coated plates to retain more protein and long incubation time for a readable signal; the requirement for a dedicated reader further impedes its widespread applicability in laboratory settings.
The present disclosure aims to introduce a novel bioanalytical method that reveals the protein secretion patterns at a single cell level to understand the biophysical and biochemical correlation. The method improves on existing methods like ELISpot, such that instead of relying on a spot for indicating where a cell has secreted protein, individual fluorescent “dots” are revealed to indicate individual proteins within a “spot”.
The present disclosure is directed to methods and kits for performing plasmon-enhanced fluoro-dot assays. These assays enable observing a correlation between a chemical stimulus and a biological response of cultured cells in vitro.
In one embodiment, the present disclosure is directed to a method for detecting cellular protein secretion, the method comprising: (i) adding at least one stimulant to a sample comprising at least one cell fixed on a substrate, wherein the at least one stimulant stimulates the at least one cell to secrete at least one protein; (ii) capturing the at least one protein secreted by the at least one cell; (iii) adding at least one detection antibody to the sample; (iv) adding at least one plasmonic-fluor to the sample; and (v) measuring at least one fluorescence signal from the sample.
In another embodiment, the present disclosure is directed to a kit comprising: a sample comprising a substrate, wherein the substrate optionally comprises at least one cell affixed thereon; at least one stimulant; at least one detection antibody; at least one plasmonic-fluor; and written instructions for detecting cellular protein secretion, comprising the steps of: (i) optionally affixing at least one cell on the substrate; (ii) adding the at least one stimulant to the sample, wherein the sample comprises at least one cell fixed on the substrate, wherein the at least one stimulant stimulates the at least one cell to secrete at least one protein; (iii) capturing the at least one protein secreted by the at least one cell; (iv) adding the at least one detection antibody to the sample; (v) adding the at least one plasmonic-fluor to the sample; and (vi) measuring at least one fluorescence signal from the sample.
Described herein is a new ultrasensitive method for detecting and quantifying protein secretion at a single-cell level. The high sensitivity of the assay stems from an ultrabright plasmon-enhanced fluorescent nanolabel called plasmonic-fluor. The enhancement of the emission of fluorophores in proximity to plasmonic nanostructures such as gold and silver nanoparticles is largely attributed to (i) the enhanced electromagnetic field at the surface of the plasmonic nanoparticles; and (ii) the decrease in the fluorescence lifetime due to the coupling between the excited fluorophores and the surface plasmons of the nanoparticles.
The plasmon-enhanced method reported herein, called “Fluoro-dot assay”, is better than conventional approaches as (i) it can be performed on readily available glass-bottom 96-well plates, unlike special PVDF/nitrocellulose membrane coated plates; (ii) it can detect protein secretions within 30 minutes to a few hours, as compared to overnight or days of incubation; (iii) the assay can be read using a standard epifluorescence microscope with a 20× objective; (iv) it provides spatial information at cellular and sub-cellular scales; and (v) the assay read-out is digital and quantitative. The read-out is in the form of images displaying distinguishable dots which can be quantified rather than the vaguely defined spot in ELISpot and FluoroSpot assays. Significantly, in this assay, the cells can be fixed on the plate so the spatial information such as the morphology of the cells, directionality or polarized secretion, activation of fluorescent reporters, and/or functional significance of heterogeneity can be correlated with protein secretion (
Using an ultrabright and specific fluorescent nanolabel described herein, low to high abundant proteins secreted by single cells can be imaged. The assay has been extensively validated by probing proteins secreted from dendritic cells (DCs) in response to TLR4 stimulation. This is the first disclosure demonstrating high resolution images of single-cell protein secretion, revealing previously inaccessible details such as cell-to-cell heterogeneity and directionality.
In many embodiments, methods according to the present disclosure are suitable for detecting cellular protein secretion.
In some embodiments, the method for detecting cellular protein secretion comprises: (i) adding at least one stimulant to a sample comprising at least one cell fixed on a substrate, wherein the at least one stimulant stimulates the at least one cell to secrete at least one protein; (ii) capturing the at least one protein secreted by the at least one cell; (iii) adding at least one detection antibody to the sample; (iv) adding at least one plasmonic-fluor to the sample; and (v) measuring at least one fluorescence signal from the sample.
In many embodiments, the at least one stimulant is selected from any suitable stimulant known in the art. In some embodiments, the at least one stimulant is selected from the group consisting of toll-like receptor 4 (TLR4) agonists, lipopolysaccharide (LPS), and combinations thereof.
In many embodiments, the at least one detection antibody is selected from any suitable detection antibody known in the art. The at least one detection antibody is natural, artificial, and/or modified. In some embodiments, the at least one detection antibody is biotinylated.
In many embodiments, the at least one plasmonic-fluor is selected from any suitable plasmonic-fluor known in the art. Suitable plasmonic-fluors are described in U.S. patent application Ser. No. 17/281,480, which is herein incorporated by reference in its entirety.
In some embodiments, the at least one plasmonic-fluor is streptavidin-conjugated. In some embodiments, the at least one plasmonic-fluor comprises a plasmonically active material selected from the group consisting of gold (Au), silver (Ag), copper (Cu), and combinations thereof.
In some embodiments, the at least one plasmonic-fluor comprises a plasmonic nanostructure selected from the group consisting of nanorods, nanocubes, nanospheres, bimetallic nanostructures, gold core silver shell nanocuboids, nanotubes, gold nanorods, silver nanocubes, silver nanospheres, gold nanorod core, silver shell (AuNR®Ag) nanocuboids, nanostructures with sharp tips, nanostars, hollow nanostructures, nanocages, nanorattles, nanobipyramids, nanoplates, self-assembled nanostructures, nanoraspberries, and combinations thereof.
In some embodiments, the at least one plasmonic-fluor comprises a fluorescent label selected from the group consisting of Cy3, Cy5, and combinations thereof. In some embodiments, the at least one plasmonic-fluor is selected from the group consisting of Streptavidin-conjugated Cy3-plasmonic-fluor (PF550™ ultrabright fluor), streptavidin-conjugated Cy5-plasmonic-fluor (PF650™ ultrabright fluor), and combinations thereof.
In many embodiments, the substrate is selected from any suitable substrate known in the art. In some embodiments, the substrate is selected from the group consisting of glass substrates, plastic substrates, well-plates, and combinations thereof.
In many embodiments, the fluorescence signal is measured according to any suitable technique known in the art. In some embodiments, the method step of measuring at least one fluorescence signal from the sample comprises measuring the at least one fluorescence signal with a technique selected from the group consisting of fluorescence microscopy, epifluorescence microscopy, and combinations thereof. In some embodiments, the method step of measuring at least one fluorescence signal from the sample comprises measuring a plurality of fluorescence signals from a plurality of fluorescent dots.
In many embodiments, the at least one cell is selected from any suitable cell and/or cell line known in the art. In some embodiments, the at least one cell is selected from the group consisting of dendritic cells, JAWS II cells, and combinations thereof.
In many embodiments, the at least one protein is selected from any suitable protein known in the art. In some embodiments, the at least one protein secreted by the at least one cell is selected from the group consisting of cytokines, TNFα, IFN-α/β, IL-6, IFNγ, and combinations thereof.
In some embodiments, the method further comprises measuring at least one spatial signal from the sample, wherein the at least one spatial signal is measured with a technique selected from the group consisting of microscopy, scanning electron microscopy (SEM), transmission electron microscopy (TEM), and combinations thereof.
In some embodiments, the method further comprises incubating the sample.
In many embodiments, methods according to the present disclosure are performed according to the supplies and instructions of a kit. In some embodiments, the kit comprises: a sample comprising a substrate, wherein the substrate optionally comprises at least one cell affixed thereon; at least one stimulant; at least one detection antibody; at least one plasmonic-fluor; and written instructions for detecting cellular protein secretion, comprising the steps of: (i) optionally affixing at least one cell on the substrate; (ii) adding the at least one stimulant to the sample, wherein the sample comprises at least one cell fixed on the substrate, wherein the at least one stimulant stimulates the at least one cell to secrete at least one protein; (iii) capturing the at least one protein secreted by the at least one cell; (iv) adding the at least one detection antibody to the sample; (v) adding the at least one plasmonic-fluor to the sample; and (vi) measuring at least one fluorescence signal from the sample.
In some embodiments, the sample comprises at least one cell fixed on the substrate, wherein the at least one cell is selected from the group consisting of at least one cell fixed to the substrate provided with the kit, at least one cell fixed to the substrate by a user, and combinations thereof.
Without further elaboration, it is believed that one skilled in the art using the preceding description can utilize the present disclosure to its fullest extent. The following Examples are, therefore, to be construed as merely illustrative, and not limiting of the disclosure in any way whatsoever. The starting material for the following Examples may not have necessarily been prepared by a particular preparative run whose procedure is described in other Examples. It also is understood that any numerical range recited herein includes all values from the lower value to the upper value. For example, if a range is stated as 10-50, it is intended that values such as 12-30, 20-40, or 30-50, etc., are expressly enumerated in this specification. These are only examples of what is specifically intended, and all possible combinations of numerical values between and including the lowest value and the highest value enumerated are to be considered to be expressly stated in this application.
Plasmonic-fluor procurement and characterization.
Streptavidin-conjugated Cy3-plasmonic-fluor (PF550™ ultrabright fluor) and streptavidin-conjugated Cy5-plasmonic-fluor (PF650™ ultrabright fluor) were purchased from Auragent Biosceince LLC (St. Louis, USA). The extinction was measured using a Shimadzu UV-1800 spectrophotometer. SEM images were obtained using a FEI Nova 2300 field-emission scanning electron microscope at an acceleration voltage of 10 kV. TEM images were obtained using a JEOL JEM-2100F field emission instrument. A drop of aqueous solution was dried on a carbon-coated grid, which had been made hydrophilic by glow discharge. Molar concentrations of plasmonic-fluors was calculated as described previously. Fluorescence intensity was recorded using Azure Biomolecular Imager: Sapphire RGBNIR (Azure Biosystems, Inc. Dublin, USA) and the images were analyzed using Licor Image Studio Lite.
Standard Curve Using Plasmonic-Fluors.
Mouse TNFα DuoSet ELISA kit (R&D systems, catalog number DY410, lot number P189768), mouse IL-6 DuoSet ELISA kit (R&D systems, catalog number DY406, lot number P234212), mouse IFNγ DuoSet ELISA kits (R&D systems, catalog number DY485-05, lot number P234214) and mouse IL-1β (Invitrogen, catalog number 88-7013-88 and lot number 183204000) were used to perform the assays. Glass-bottom 96-well black plate (P96-1.5H-N, Cellvis, Mountain View, USA) was first coated with capture antibodies as per manufacturer's instructions (100 μl/well) and incubated overnight at 4° C. The plate was washed three times with 1×PBST (1×PBS with 0.05% Tween-20) and then blocked with 200 μl of reagent diluent (1×PBS in 1% BSA, 0.2 μm filtered). After blocking the plates were washed three times with PBST, and serial dilutions of standard protein was added to different wells in duplicates and incubated for 2 hours at room temperature. The plates were washed three times with PBST and then incubated for 2 hours with 100 μl of biotinylated detection antibody as per the manufacturer's instructions. The plates were washed three times with PBST and streptavidin Cy5-plasmonic-fluor (extinction 0.5) for 30 minutes at room temperature in dark. Finally, the plates were washed three times in PBST and imaged using Nikon TsR2 epifluorescence microscope.
Fluoro-Dot Assay on JAWS II DC.
Mouse TNFα DuoSet ELISA kits (R&D systems, catalog number DY410, lot number P189768) was used to perform the assays. Glass-bottom 96-well black plate (P96-1.5H-N, Cellvis, Mountain View, USA) was first coated with capture antibodies (0.8 μg/ml in PBS), 100 μl/well and incubated overnight at 4° C. The plate was washed three times with 1×PBS and then blocked with 200 μl of reagent diluent (1×PBS in 1% BSA, 0.2 μm filtered). After blocking, the plates were washed three times with PBS. Mouse JAWS II dendritic cells (immature, monocytes ATCC® CRL11904™) were cultured in alpha minimum essential medium with ribonucleosides, deoxyribonucleosides, 4 mM L-glutamine, 1 mM sodium pyruvate and 5 ng/ml murine GM-CSF, 10% heat-inactivated fetal bovine serum, 50 IU/ml of penicillin, 50 μg/ml of streptomycin. JAWS II DCs were seeded on the capture coated plates, at the seeding density of 5,000 cells/well in 100 μl of medium followed by incubation at 37° C. in 5% CO2 for 30 minutes. All the non-adherent cells were removed by taking out the medium and replacing it with 100 μl of fresh medium containing varying amounts of LPS ranging from (0 to 2000 ng/ml). The cells were incubated at 37° C. in 5% CO2 for varying durations from 20 minutes to 90 minutes.
After completion of the incubation duration, the medium was decanted, and the cells were fixed using 100 μl/well of 4% neutral buffered formalin (NBF) for 20 minutes at room temperature. The plates were then washed three times with PBS and incubated with biotinylated detection antibodies, 75 ng/ml in reagent diluent for 2 hours at room temperature. The plates were washed three times using PBS and then were incubated with 100 μl/well of streptavidin Cy5-plasmonic-fluors (extinction 0.5) for 30 minutes at room temperature in dark. For comparison, 100 μl of 1 μg/ml of streptavidin-Cy5 (Thermo Fisher Scientific, catalog number SA1011) as conventional fluorophore and 1 nM of streptavidin QD655™ (Thermo Fisher Scientific, catalog number Q10123MP) was added to each well for 30 minutes at room temperature in dark. The plates were washed with PBS three times, and the nuclei of the cells were stained with 300 nM DAPI solution (Millipore Sigma, St. Louis, Mo., USA) for 5 minutes at room temperature in dark. Finally, the plates were washed three times in PBS and imaged using Nikon TsR2 epifluorescence microscope. For ELISA, culture supernatants of JAWS II DC after treatment described above were collected and TNFα concentration was measured using mouse TNFα DuoSet ELISA kits (R&D systems, catalog number DY410, lot number P189768) as per manufacturer's instructions.
Epifluorescence Microscopy.
All images were acquired on a Nikon Eclipse Ts2R-FL epifluorescence illumination microscope with a 20×, 0.75—numerical aperture (NA) lens and 60×, 1.4-NA. The microscope is attached to Hamamatsu digital camera (ORCA-Flash 4.0) with aura light engine. NIS-Elements AR 5.11.01 64-bit software was used to acquire images. Bright field and fluorescence images were collected in four channels corresponding to DAPI, Cy5, TRITC and GFP. For Cy5, TRITC and GFP, 200 ms exposure time was used and for DAPI exposure time of 50 ms was used. All images were saved as .tif files and further processed.
Image Processing and Calculation of Signal-to-Noise Ratio.
Image J 1.53a (64-bit), was used for adjusting the brightness and contrast of .tif images. Pseudo-color was imparted to images collected from different channels and merged using Image J tool. Pseudo-line was drawn on the image and analyzed using “plot profile” feature to obtain intensity vs. distance (pixels) graph. The raw data of the graph was exported, and signal-to-noise ratio (SNR) was calculated using the following equation:
SNR=(Average signal)/(Standard deviation of noise)
Average of 5 pixels with highest intensity was recorded as average signal. Standard deviation of first and last 50 pixels was recorded as standard deviation of noise.
Antibody Conjugation on Plasmonic-Fluor for Multiplexing and Validation.
Streptavidin-conjugated Cy3-plasmonic-fluor (40 extinction 32) and streptavidin-conjugated Cy5-plasmonic-fluor (40 extinction 30) was added to 50 μl of 4.5 μg/ml biotinylated IL-6 detection antibody and biotinylated TNF-α detection antibody, respectively. The mixture was incubated for 30 minutes at room temperature and then washed twice with pH 10 water. For washing, Cy3-plasmonic-fluor was centrifuged at 4,000 revolutions per minute (rpm) for 10 minutes, and Cy5-plasmonic-fluor was centrifuged at 6,000 rpm for 10 minutes. Finally, the pellet was resuspended in 1% BSA in 1×PBS and stored in 4° C. until further use. In order to validate the successful conjugation of the antibody, 0.5 μl of TNFα capture antibody (0.8 μg/ml in 10% glycerol in 1×PBS) was deposited on top-left area of a 96-well glass-bottom plate. Similarly, 0.5 μl of IL-6 capture antibody (2 μg/ml in 10% glycerol in 1×PBS) was deposited on top-right area of the same 96-well glass-bottom plate. 0.5 μl of a mixture of TNFα capture antibody (0.8 μg/ml in 10% glycerol in 1×PBS) and IL-6 capture antibody (2 μg/ml in 10% glycerol in 1×PBS) was deposited on bottom-middle area of the same 96-well glass-bottom plate. The plate was sealed with plate sealant and incubated for 2 hours at room temperature. The plate was washed three times with 1×PBST and then blocked with 200 μl of reagent diluent (1×PBS in 1% BSA, 0.2 μm filtered). After blocking, the plates were washed three times with PBST and 5,000 μg/ml of both of standard proteins (TNFα and IL-6) in 100 μl of 1% BSA in 1×PBS was added to the well and incubated for 2 hours at room temperature. The plates were washed three times with PBST and then incubated for 2 hours with a suspension comprised of 50 μl of IL-6 detection antibody-conjugated Cy3-plasmonic-fluor and 50 μl of TNFα detection antibody-conjugated Cy5-plasmonic-fluor (extinction 1 each) in dark. Finally, the plates were washed three times in PBST and imaged using Nikon TsR2 epifluorescence microscope using a 4× objective.
Multiplexed Fluoro-Dot Assay.
Mouse TNFα DuoSet ELISA kits (R&D systems, catalog number DY410, lot number P189768) and mouse IL-6 DuoSet ELISA kit (R&D systems, catalog number DY406, lot number P234212) were used to perform the assays. Glass-bottom 96-well black plate (P96-1.5H-N, Cellvis, Mountain View, USA) was first coated with both TNFα capture antibody (0.8 μg/ml in PBS) and IL-6 capture antibody (2 μg/ml in PBS), 100 μ/well, and incubated overnight at 4° C. The plate was washed three times with 1×PBS and then blocked with 200 μl of reagent diluent (1×PBS in 1% BSA, 0.2 μm filtered). After blocking the plates were washed three times with PBS. JAWS II dendritic cells (ATCC® CRL-11904™) were cultured in alpha minimum essential medium with ribonucleosides, deoxyribonucleosides, 4 mM L-glutamine, 1 mM sodium pyruvate and 5 ng/ml murine GM-CSF, 10% heat-inactivated fetal bovine serum, 50 IU/ml of penicillin, 50 μg/ml of streptomycin. JAWS II DCs were seeded on the capture coated plates, at the seeding density of 5,000 cells/well in 100 μl of medium followed by incubation at 37° C. in 5% CO2 for 30 minutes. All the non-adherent cells were removed by taking out the medium and replacing it with 100 μl of fresh medium containing 200 ng/ml of LPS. The cells were incubated at 37° C. in 5% CO2 for 30 minutes, 1 hour, 2 hours, and 3 hours. The wells with medium and without LPS were incubated for 3 hours. Subsequently, the medium was decanted, and cells were fixed using 100 μl/well of 4% neutral buffered formalin (NBF) for 20 minutes at room temperature. The plates were then washed three times with PBS and incubated with biotinylated detection antibody conjugated plasmonic-fluors (TNFα-detection antibody conjugated Cy5-plasmonic-fluor and IL-6 detection antibody conjugated Cy3-plasmonic-fluor: extinction 0.5) in reagent diluent for 2 hours at room temperature. The plates were washed three times using PBS and the nuclei of the cells were stained with 300 nM DAPI solution (Millipore Sigma, St. Louis, Mo., USA) for 5 minutes at room temperature in dark. Finally, the plates were washed three times in PBS and imaged using Nikon TsR2 epifluorescence microscope.
Statistics.
For analyzing the statistical difference between more than two groups, one-way analysis of variance (ANOVA) with a post-hoc Tukey's honest significance test was used. Statistical significance of the data was calculated at 95% (p<0.05) confidence intervals. All values are expressed as mean±standard deviation. GraphPad Prism 6 was used for all statistical analysis. Linear regression was used to calculate the equation and to derive the slope of fluorescence intensity vs. molar concentration graph. 4-parameter logistic (4-PL) was used to calculate the R2 values and LOD in the standard curves of immuno-assays. The LOD is defined as the analyte concentration corresponding to the mean fluorescence intensity of blank plus three times of its standard deviation (mean+3σ). For Fluoro-dot assay, all measurements were taken from distinct samples as well as different regions of the same sample.
First, plasmonic-fluor performance was compared with that of conventional fluorophores and quantum dots to enable the detection of proteins secreted by single cells. For this purpose, a dendritic cell line (JAWS II) was used, which secretes the pro-inflammatory cytokine TNFα after stimulation with toll-like receptor 4 (TLR4) agonist, lipopolysaccharide (LPS), in a dose-dependent manner. These cells were seeded on a TNFα capture antibody-coated glass-bottom 96-well plate followed by LPS treatment at three different concentrations (20 ng/ml, 200 ng/ml, and 2000 ng/ml). After 90 minutes of incubation, the cells were fixed and incubated with biotinylated TNFα detection antibody. Different wells were then treated with streptavidin-Cy5, streptavidin-quantum dot 655 (Strep-Qdot™ 655), or streptavidin-Cy5-plasmonic-fluor, and the nuclei were stained with DAPI. Using an epifluorescence microscope, a signal could not be discerned from the conventional fluorophores, and a very faint signal was observed with Strep-Qdot™ 655 (
In contrast, no distinct secretion pattern was observed with the other two labels (
To confirm the analyte dose-dependent increase in the fluorescent dots, a standard fluorescence-based sandwich immunoassay was performed and the particle count correlated with that of concentration of the analyte (TNFα, IL-6, and IFNγ). The particles were counted using a custom-build algorithm. Excellent particle count-dose dependence was observed with a correlation coefficient of >0.99 for all three analytes (limit of detection (LOD) was: TNFα —670 fg/ml; IL-6-8 fg/ml, IFNγ—3.17 μg/ml) (
One of the fundamental questions in many cell biology studies is the degree of heterogeneity in cellular responses. When cells are subject to a stimulant, it is unknown whether all the cells respond similarly, a small subpopulation of cells exuberantly responds, or a combination of both, and to what extent the heterogeneity depends upon the dose of stimulant. The plasmon-enhanced Fluoro-dot assay was used to examine the dose-response to LPS treatment, with detailed assessment of the kinetics and cell-to-cell heterogeneity of the response. Using JAWS II DCs and LPS as a stimulant, the Fluoro-dot assay revealed no significant secretion of TNFα for an incubation duration of 90 minutes at 2 ng/ml of LPS.
Substantial secretion was observed at 20 ng/ml of LPS, which continued to increase with increasing LPS concentration (
As a proof-of-concept, the feasibility of spectrally multiplexed analysis of two proteins at a single-cell level was investigated. For this purpose, detection antibody was conjugated for TNFα and IL-6 to Cy5-plasmonic-fluors and Cy3-plasmonic-fluors, respectively. The specificity of individual plasmonic-fluors to their respective analyte was confirmed by spotting the capture antibody for analytes (i.e. IL-6 and TNFα) within the same well of a microtiter plate (
Using LPS-stimulated JAWS II DCs, the concurrent secretion of TNFα and IL-6 at a single-cell level was assessed. An increase in the overall secretion of both cytokines with the increasing duration of LPS incubation from 30 minutes to 3 hours was observed (
ELISpot is a widely employed bioanalytical method, used in both research and clinical settings for a wide range of applications such as screening antigen-specific immune cells and functional T cells in cancer patients. It is used to assess response to immunotherapy, diagnose tuberculosis (T-SPOT.TB assay), map T cell responses against HIV, detect antibody secreting cells in blood after vaccination, and for functional analysis of circulating tumor cells (CTCs) to understand drug susceptibility. Despite its enormous utility, this method has not undergone significant technological advances in spatial resolution or sensitivity over the past three decades. ELISpot assays thus remain severely limited by the inability to spatially resolve protein secretion, discrepancies in assay read-out, and false negatives in clinical diagnosis.
Herein is introduced a simple, yet powerful, ultra-resolved digital version of ELISpot and FluoroSpot assay called plasmon-enhanced Fluoro-dot assay. The unmet need for an exceptionally bright fluorescent tag capable of detecting single-molecule fluorescence is served by plasmonic-fluors, which outperform conventional fluorophores and quantum dots. Using plasmonic-fluors, the limit-of-detection of the Fluoro-dot assay is improved by more than two orders of magnitude compared to conventional biolabels. The signal is digitized and the fluorescent dots can be counted, in contrast to integrating the signal as in the case of ELISpot and FluoroSpot, which can be considered as analog version of this assay. This method will provide deeper insights into how the mechanotransduction, polarization, and adhesion properties of cells correlates with single-cell protein secretion, and application of this method for studying inflammasome-mediated protein secretion in diverse cell types including immune cells and endothelial cells.
Since heterogeneity is a fundamental characteristic of cellular systems, single-cell technologies and measurements are of immense value for an in-depth understanding of individual cells, facilitating disease model development, drug discovery, and meaningful biological insights beyond ensemble population averages. The Fluoro-dot assay enables the visualization of these parameters (heterogeneity, directionality) and can be implemented for better understanding of host-pathogen interaction, neuronal secretions, and tumor cytotoxicity. When compared to any of the conventionally used approaches, Fluoro-dot assay can lead to transformative advances in single-cell secretion studies as it is versatile, low-cost, and is readily adaptable in any laboratory setting with regularly used supplies and reagents (glass-bottom 96-well plate, ELISA reagents), commercially available plasmonic-fluor (Auragent Bioscience LLC), and a standard epifluorescence microscope. Considering the evolving landscape of cellular traits, this method holds the potential to provide a comprehensive understanding of single-cell secretome.
Existing bionalaytical methods are limited to the analysis of cell culture supernatant for understanding the changes in the protein secretions upon external stimulus. Naturally, the concentrations of the target proteins in cell culture supernatants represent an ensemble average of the entire cell population (in vitro), thus masking the cell-to-cell heterogeneity and, more importantly, the locoregional correlation between biophysical stimulation and biochemical response. The present disclosure introduces a novel bioanalytical method that reveals the protein secretion patterns at single cell level to understand the biophysical and biochemical correlation.
JAWSII dendritic cells (JAWSII DC) were seeded on substrates coated with capture antibody for TNFα. The cells were treated with different concentrations (20, 200, 2000 ng/ml) of lipopolysaccharide (LPS) and after 90 minutes the cells were washed with phosphate buffered saline containing 0.05% Tween-20 (PBST). The cells were treated with biotinylated detection antibody, followed by streptavidin conjugated conventional fluor Cy5, quantum dots 655 and Cy5-plasmonic-fluor. As seen in
Accordingly, demonstrated herein is a platform technology that enables observing correlation between chemical stimulus (e.g., immunostimulating agent) and biological response (e.g., protein secretion) of cultured cells in vitro. In contrast to existing approaches that rely on conventional fluorophores or enzymatic reactions, described herein is an ultrabright nanolabel based on plasmon-enhanced fluorescence for ultrasensitive, multiplexed detection and quantification of secreted proteins. Colorimetric sensing based on enzymatic reactions is not sufficiently sensitive for the detection of low abundance biomarkers and, more importantly, is unsuitable for locoregional mapping of the secreted proteins. The fluorescence signal from conventional fluorophores is too weak, making them unsuitable for detection of secreted proteins even at relatively high concentrations (>200 pg/ml). The use of plasmonic-fluor as an ultrabright nanolabel overcomes these challenges and enables the detection of low abundant secreted proteins at an early time-point.
This written description uses examples to illustrate the present disclosure, including the best mode, and also to enable any person skilled in the art to practice the disclosure, including making and using any compositions or systems and performing any incorporated methods. The patentable scope of the disclosure is defined by the claims, and may include other examples that occur to those skilled in the art. Such other examples are intended to be within the scope of the claims if they have elements that do not differ from the literal language of the claims, or if they include equivalent elements with insubstantial differences from the literal language of the claims.
As used herein, the terms “comprises,” “comprising,” “includes,” “including,” “has,” “having,” “contains”, “containing,” “characterized by” or any other variation thereof, are intended to cover a non-exclusive inclusion, subject to any limitation explicitly indicated. For example, a composition, mixture, process or method that comprises a list of elements is not necessarily limited to only those elements but may include other elements not expressly listed or inherent to such composition, mixture, process or method.
The transitional phrase “consisting of” excludes any element, step, or ingredient not specified. If in the claim, such would close the claim to the inclusion of materials other than those recited except for impurities ordinarily associated therewith. When the phrase “consisting of” appears in a clause of the body of a claim, rather than immediately following the preamble, it limits only the element set forth in that clause; other elements are not excluded from the claim as a whole.
The transitional phrase “consisting essentially of” is used to define a composition or method that includes materials, steps, features, components, or elements, in addition to those literally disclosed, provided that these additional materials, steps, features, components, or elements do not materially affect the basic and novel characteristic(s) of the claimed disclosure. The term “consisting essentially of” occupies a middle ground between “comprising” and “consisting of”.
Where a disclosure or a portion thereof is defined with an open-ended term such as “comprising,” it should be readily understood that (unless otherwise stated) the description should be interpreted to also describe such a disclosure using the terms “consisting essentially of” or “consisting of.”
Further, unless expressly stated to the contrary, “or” refers to an inclusive or and not to an exclusive or. For example, a condition A or B is satisfied by any one of the following: A is true (or present) and B is false (or not present), A is false (or not present) and B is true (or present), and both A and B are true (or present).
Also, the indefinite articles “a” and “an” preceding an element or component of the disclosure are intended to be nonrestrictive regarding the number of instances (i.e., occurrences) of the element or component. Therefore “a” or “an” should be read to include one or at least one, and the singular word form of the element or component also includes the plural unless the number is obviously meant to be singular.
This application claims priority benefit of U.S. Provisional Application Ser. No. 63/265,063 filed Dec. 7, 2021, the entire contents of which are incorporated by reference herein.
This invention was made with government support under grant number CBET-1900277 awarded by the National Science Foundation. The government has certain rights in the invention.
| Number | Date | Country | |
|---|---|---|---|
| 63265063 | Dec 2021 | US |
