Patent Application
20140302568
The present invention relates to a novel polyol oxidase derived from a microorganism belonging to the genus Penicillium, and a method for efficient production of a rare sugar by utilizing the property of this polyol oxidase such that it is specific for a rare sugar.
It is well known that by utilizing the molecular recognition function of an enzyme to selectively react only with a specific substance, a target substance is produced, or such an enzyme is used in a sensor for detecting a target substance.
An enzyme sensor has advantages that it is simple, prompt, accurate, small, low in cost, and so on as compared with conventionally used general analytical methods such as liquid chromatography and gas chromatography, and therefore is widely used in clinical diagnosis, food analysis, environmental pollution measurement, etc.
As the enzyme sensor, many enzyme sensors have been proposed as follows: for example, an enzyme sensor capable of quantitatively determining xylitol present in a sample simply and specifically in such a manner that xylitol is converted to D-xylose by adding a xylitol oxidase-containing reagent to a sample in which D-sorbitol or glucose is mixed together, and then, a xylose dehydrogenase-containing reagent is allowed to act on the sample, and the resulting D-xylose is detected (PTL 1), and a method for measuring a polyol in a sample for measuring a polyol by allowing a sorbitol oxidase to act on a sample containing at least one type of polyol selected from the group consisting of sorbitol, mannitol, xylitol, and arabitol, and measuring the amount of generated hydrogen peroxide, D-glucose, mannose, xylose, or arabinose, or the amount of consumed oxygen (PTL 2).
As a representative example of the enzyme sensor which has been put into practical use, there is known a blood glucose measuring device which utilizes a glucose oxidase and is used by a diabetic patient. In the blood, a lot of components are mixed together, and it is very difficult to selectively detect glucose among these components. However, by utilizing a glucose oxidase, glucose can be selectively recognized in the blood. This blood glucose measuring device enables a diabetic patient to simply monitor a blood glucose level by drawing the blood by oneself when the diabetic patient gives oneself insulin, and therefore, its market is expanding. The oxidase used also in the blood glucose measuring device consumes oxygen as an electron acceptor when a substrate is oxidized and catalyzes a reaction to generate hydrogen peroxide. The consumption of oxygen can be simply measured using an oxygen electrode, and the generation of hydrogen peroxide can be simply measured using a hydrogen peroxide electrode, and thus, the oxidase is an enzyme suitable for application to the enzyme sensor.
Recently, Japanese society has been aging, and accompanying this, the enhancement of medical technology has been demanded. Further, it is anticipated that food analysis and environment measurement, to which the application of the enzyme sensor has been advanced, are fields in which the need for the enzyme sensor will further increase in future. However, since an oxidase having high substrate specificity is limited at present, it will be necessary to search for a novel oxidase for developing the enzyme sensor in future.
On the other hand, rare sugars are monosaccharides which do not exist at all or exist in a very small amount in nature, and have hardly been studied so far. However, since the mass production of D-psicose and D-allose has become possible, studies of production techniques for rare sugars and studies of physiological actions and chemical properties of rare sugars have been undertaken, and specific physiological actions have been elucidated one after another. When such rare sugars are put into practical use as pharmaceuticals, an enzyme which specifically reacts with rare sugars has been required to be provided. Examples of the physiological activities of rare sugars are shown in the following Table 1.
With respect also to the utilization of an enzyme for the production of a compound, proposals related to many compounds and enzymes have been made, and for example, recently, by utilizing D-tagatose-3-epimerase (DTE), a technique of mass production of D-psicose or D-allose, each of which is one type of rare sugar, has been established. A method for producing D-allose in which a protein having an L-rhamnose isomerase activity derived from Pseudomonas stutzeri (IPOD FERM BP-08593) is allowed to act on a substrate to isomerize the substrate to D-allose (PTL 3), and a method for producing an aldohexose in which a D-xylose isomerase is allowed to act on a solution containing D-psicose and/or L-psicose to produce D-allose and D-altrose from D-psicose and to produce L-altrose from L-psicose, and one type or two or more types of aldohexoses selected from these D-allose, D-altrose, and L-altrose is/are collected (PTL 4) have been proposed.
As described above, it has become known that rare sugars have highly practical physiological activities, and also have the potential of practical application in a wide field of sweeteners, agricultural chemicals, medicines, industrial materials, etc. in addition to this. Therefore, a simple and rapid quantitative determination method is considered to be required in future. However, a micro-quantitative determination method therefor has not been established yet, and thus, it is significant that an oxidase having high specificity for each rare sugar is found and can be utilized in an enzyme sensor. Further, the mass production techniques for all rare sugars have not been established yet, and many of the rare sugars still can be produced in only a small amount through a multistep reaction. Accordingly, if an enzyme capable of producing such a rare sugar by an oxidation reaction is discovered, a novel rare sugar mass production pathway enabling a high yield through a one-step reaction can be created, and thus, it is expected that the study of rare sugars is further advanced.
In such a circumstance, it is well known that a wheat bran culture medium is similar to a condition where a microorganism grows in nature in the respect that the microorganism grows on a surface of a culture medium where the humidity is low. It has been frequently reported that when an actinomycete or a filamentous fungus is cultured using a wheat bran culture medium, a lot of unique enzymes, which are not produced by using a common liquid culture medium or the like, are extracellularly produced. For example, with respect to a lysine oxidase produced by Trichoderma viride (NPL 1) or the like, an oxidase having high substrate specificity is obtained by using a wheat bran culture medium. By studying such conventional techniques, the present invention can provide a novel enzyme which specifically acts on a rare sugar.
An object of the present invention is to provide a polyol oxidase having broad substrate specificity, and another object is to provide a method for efficient production of a rare sugar by utilizing the property of this polyol oxidase. Further, a still another object of the present invention is to find an oxidase having high specificity for each rare sugar and to provide an enzyme sensor for each rare sugar.
A gist of the present invention is a polyol oxidase described in the following (1) to (3).
(1) A polyol oxidase, which is derived from a microorganism belonging to the genus Penicillium and is specified by the properties listed in the following (a) to (e):
(a) it has a stable pH of 6.0 or higher and an optimum reaction pH of from 7.0 to 9.0;
(b) it has an operating temperature of 50° C. or lower and an optimum reaction temperature of 40° C.;
(c) it has a molecular weight of about 113 kDa;
(d) it specifically recognizes the structure of a polyol in which the OH groups at positions 2 and 3 are in the L-erythro configuration and reacts therewith, and it cannot recognize the structure of a polyol in which the OH group at position 4 is in the L-ribo configuration and does not react therewith; and
(e) it has substrate specificity for D-arabitol, erythritol, D-mannitol, and D-sorbitol, which are listed in descending order of specificity.
(2) The polyol oxidase according to the above (1), wherein the microorganism belonging to the genus Penicillium is Penicillium sp. KU-1 (Accession Number: NITE BP-1156).
(3) The polyol oxidase according to the above (1) or (2), wherein the polyol oxidase is obtained by culturing the microorganism belonging to the genus Penicillium using wheat bran as a culture medium.
Another gist of the present invention is a method for producing a rare sugar described in the following (4) to (7).
(4) A method for producing D-mannose, characterized in that the polyol oxidase according to any one of above (1) to (3) is allowed to act on D-mannitol, thereby oxidizing D-mannitol to D-mannose.
(5) A method for producing D-lyxose, characterized in that the polyol oxidase according to any one of the above (1) to (3) is allowed to act on D-arabitol, thereby oxidizing D-arabitol to D-lyxose.
(6) A method for producing L-gulose, characterized in that the polyol oxidase according to any one of the above (1) to (3) is allowed to act on D-sorbitol, thereby oxidizing D-sorbitol to L-gulose.
(7) A method for producing L-erythrose, characterized in that the polyol oxidase according to any one of the above (1) to (3) is allowed to act on erythritol, thereby oxidizing erythritol to L-erythrose.
According to the present invention, the following advantageous effects are exhibited.
1. A polyol oxidase having broad substrate specificity can be provided.
2. A polyol oxidase having high reactivity for D-arabitol, erythritol, D-mannitol, and D-sorbitol can be provided.
3. The operation is simple, prompt, and accurate, the size is small, and the cost is low as compared with general analytical methods such as liquid chromatography and gas chromatography, and therefore, the present invention is useful for clinical diagnosis, food analysis, environmental pollution measurement, etc. related to a rare sugar.
4. A rare sugar can be efficiently produced.
5. The present enzyme catalyzes a one-step reaction and also the oxidation reaction is an irreversible reaction, and therefore, it is expected that the present enzyme enables the mass production of a rare sugar in a yield of almost 100%.
6. The following specific production methods for sugars can be provided by utilizing the present polyol oxidase:
a. a method for producing D-lyxose by using D-arabitol as a starting material;
b. a method for producing L-erythrose by using erythritol as a starting material;
c. a method for producing D-mannose by using D-mannitol as a starting material; and
d. a method for producing L-gulose by using D-sorbitol as a starting material.
The present invention relates to a polyol oxidase, which is derived from a microorganism belonging to the genus Penicillium and is specified by the properties listed in the following (a) to (e):
(a) it has a stable pH of 6.0 or higher and an optimum reaction pH of from 7.0 to 9.0;
(b) it has an operating temperature of 50° C. or lower and an optimum reaction temperature of 40° C.;
(c) it has a molecular weight of about 113 kDa;
(d) it specifically recognizes the structure of a polyol in which the OH groups at positions 2 and 3 are in the L-erythro configuration and reacts therewith, and it cannot recognize the structure of a polyol in which the OH group at position 4 is in the L-ribo configuration and does not react therewith; and
(e) it has substrate specificity for D-arabitol, erythritol, D-mannitol, and D-sorbitol, which are listed in descending order of specificity.
The polyol oxidase of the present invention has remarkable substrate specificity for D-arabitol, erythritol, D-mannitol, and D-sorbitol, and is useful for the production of a rare sugar or the detection of a rare sugar. In particular, it is useful for the production of D-mannose from D-mannitol, D-lyxose from D-arabitol, L-gulose from D-sorbitol, and L-erythrose from erythritol.
The oxidase of the present invention is derived from a strain KU-1 obtained from soil collected from the Miki-cho Ikenobe community center in Kagawa prefecture, Japan, and as will be described in detail in the following paragraph, this strain was found to be a strain belonging to the genus Penicillium. This Penicillium sp. KU-1 strain was domestically deposited on Oct. 26, 2011 in the Patent Microorganisms Depositary of the National Institute of Technology and Evaluation (2-5-8 Kazusakamatari, Kisarazu City, Chiba Prefecture, Japan) under the Accession Number of NITE P-1156, and is available therefrom. When the international application was filed at this time, a request for transfer of the original deposit (NITE P-1156) was made on Oct. 16, 2012 to the international depositary authority in which the strain was originally deposited as described above, and a proof of receipt (NITE BP-1156) with respect to the original deposit was issued on Oct. 25, 2012 by the international depositary authority.
The Penicillium sp. KU-1 strain belonging to the genus Penicillium which produces the above-described polyol oxidase of the present invention is sometimes also referred to as “A strain” in the following description.
Examples of a known polyol oxidase include a sorbitol oxidase and a xylitol oxidase produced by a microorganism belonging to the genus Streptmyces, however, it has been revealed that in these enzymatic reactions using D-sorbitol as a substrate, D-glucose is produced. On the other hand, it has been strongly suggested that an enzyme produced by a microorganism belonging to the genus Penicillium produces (L-)gulose from D-sorbitol and (D-)lixose from D-arabitol. At present, L-gulose is produced from L-sorbose by using an isomerase. Further, D-lyxose is produced from D-glucose through D-arabitol and D-xylose by a multistep reaction. Moreover, since it is a reaction using an isomerase, the yield of D-lyxose produced is low. In this respect, the present enzyme catalyzes a one-step reaction and also the oxidation reaction is an irreversible reaction, and therefore, the present enzyme enables the mass production of such a rare sugar in a yield of almost 100%. Accordingly, the enzyme of the present invention is expected to be applied to a novel production system of a rare sugar.
Hereinafter, the oxidase of the present invention will be described.
As Potato Dextrose Agar (PDA) used in a culture medium, one manufactured by Bection, Dickinson and Company was used.
About 5 mL of water was added to about 1 g of soil collected from various places, whereby a soil suspension was prepared. Then, 50 μL of a solution obtained by diluting the supernatant of the suspension to 100-fold was applied onto a PDA culture medium, followed by incubation at 28° C. Among the colonies formed thereon, a strain which was thought to be a filamentous fungus was inoculated into the same culture medium, followed by incubation at 28° C., whereby the strain was isolated.
Soil was collected from an area on the premises of the Kagawa University and an area in Kagawa Prefecture centering around the Kagawa University, and also collected from an area outside Kagawa Prefecture such as a park in Osaka Prefecture. From the collected soil, 139 strains which were thought to be filamentous fungi were isolated. The types of soil microorganisms vary depending on the collected soil, for example, bacteria were mainly included, a lot of colonies of filamentous fungi could be confirmed, and so on, and therefore, it was revealed that the types of soil microorganisms vary depending on the sampling sites. Further, the growth rate of bacteria is faster than that of filamentous fungi, and therefore, bacteria grew and spread throughout the culture medium and it was difficult to isolate filamentous fungi in some soil. It is considered that in order to prevent this, by performing incubation using a culture medium supplemented with an antibiotic such as ampicillin, it becomes possible to efficiently isolate filamentous fungi.
The filamentous fungi isolated from the soil were cultured using a wheat bran culture medium, and screening for a filamentous fungus which produces and secretes an oxidase in the culture medium was performed.
As wheat bran in the wheat bran culture medium used as the culture medium, one purchased from JA Kagawa was used, and as Potato Dextrose Broth (PDB), one manufactured by Bection, Dickinson and Company was used. As a buffer, a potassium phosphate buffer (pH 7) was used, and also as both dipotassium hydrogen phosphate and potassium dihydrogen phosphate, those manufactured by Wako Pure Chemical Industries, Ltd. were used. As for sugars used as substrates, as D-glucose, D-mannitol, and D-sorbitol, those manufactured by Nacalai Tesque, Inc. were used, as D-fructose, D-galactose, and D-mannose, those manufactured by Wako Pure Chemical Industries, Ltd. were used, and as allitol, D-tagatose, D-psicose, and D-allose, those obtained from the Kagawa University Rare Sugar Research Center were used. As for amino acids used as substrates, as creatine and creatinine, those manufactured by Wako Pure Chemical Industries, Ltd. were used, and as L-ornithine, L-citrulline, and y-aminobutyric acid, those manufactured by Sigma-Aldrich Co. were used. As a peroxidase (ARTS) used for the measurement of an oxidase, one manufactured by Wako Pure Chemical Industries, Ltd. was used in each measurement.
Isolated microbial cells were inoculated into 5 mL of PDB, followed by shaking incubation at 28° C. for 1 week. In a 200-mL Erlenmeyer flask, 6 g of wheat bran and 15 mL of water were added and mixed with each other, and the resulting mixture was sterilized in an autoclave and used as a wheat bran culture medium. To the thus prepared wheat bran culture medium, the liquid-cultured microbial cells were added together with the total amount of the culture solution, and the resulting mixture was incubated at 28° C. After two-week incubation, an extract solution was prepared by a method described below and used for the measurement of the oxidase activity.
1.3 Preparation of Extract Solution from Culture Medium
To the wheat bran culture medium in which the microbial cells were grown, 20 mL of a 10 mM potassium phosphate buffer (pH 7.0) was added, and the cells were well immersed therein and left to stand on ice for 1 hour, and then, the mixture was squeezed with a gauze pad. Thereafter, centrifugation was performed at 4° C. and 12,000 rpm for 18 minutes to remove fine particles, and the resulting solution was used as a crude extract solution.
In primary screening, a sugar mixed solution and an amino acid mixed solution were used in consideration of efficiency. Each substrate was adjusted to give a final concentration of 0.5 M. A combination in each mixed solution is shown in Table 2. The crude extract solution in which the activity was detected by the primary screening was subjected to secondary screening using the respective substrates individually at 0.5 M, and the substrate was specified.
As the measurement method for the oxidase activity, a peroxidase method was used. When a D-glucose oxidase is taken as an example, the principle of the peroxidase method is as follows.
In this method, the activity is measured by colorimetric determination of hydrogen peroxide generated by an oxidation reaction. When hydrogen peroxide generated by an oxidation reaction with a substrate is reacted with a peroxidase, an oxidation reaction of ABTS is catalyzed to generate oxidized ABTS. The oxidized ABTS develops a blue color, and therefore, by visual observation or measurement of absorbance at 420 nm, the oxidase activity can be detected. In the measurement of the activity, the crude extract solution obtained by extraction from the wheat bran culture medium was used. The composition of the reaction solution for the measurement of the oxidase activity is shown in Table 3. Further, as the control, a reaction solution in which water was added in place of the substrate was also prepared in the same manner. After a reaction was allowed to proceed at room temperature, whether or not the color was developed was confirmed by visual observation, and the crude extract solution added to the reaction solution in which the color was developed was determined to have an oxidase activity.
As a result of the screening for an oxidase, three filamentous fungal strains, which are considered to produce an oxidase were found. Among these strains, two strains were microorganisms which produce a polyol oxidase, and one was a strain collected from the Miki-cho Ikenobe community center (hereinafter referred to as “A strain”), and the other was a strain collected from a park in Moriguchi City, Osaka Prefecture (hereinafter referred to as “B strain”). Both of the A strain and the B strain produce a polyol oxidase, and the oxidase of the A strain uses D-sorbitol and D-mannitol as a substrate, but does not show reactivity with allitol, however, the enzyme of the B strain is different in the respect that it uses all of D-sorbitol, D-mannitol, and allitol as a substrate. Further, both enzymes did not react with an aldose or a ketose, and therefore, it was revealed that both enzymes show substrate specificity for a polyol. The enzymatic reactions of these enzymes by the peroxidase method are shown in
The conditions for the production of a polyol oxidase which is produced by the A strain were examined as to whether or not the enzyme was produced in a liquid culture, whether or not the enzyme production was induced by the addition of a substrate, and so on.
The A strain which is a polyol oxidase-producing microorganism was used.
As a yeast extract used in a culture medium, one manufactured by Nacalai Tesque, Inc. was used.
The microorganism was suspended in 5 mL of sterile water, and a 1 mL portion of the resulting suspension was inoculated into 100 mL of each of liquid culture media obtained by adding (1) PDB and (2) a yeast extract, and mannitol (0.5%) or D-sorbitol (0.5%), followed by shaking incubation at 28° C.
Starting from day 2 of the culture, a 500 μL portion was taken out from each culture solution, and centrifuged at 12000 rpm and 4° C. for 10 minutes. Then, the supernatant was collected and dialyzed with a 10 mM potassium phosphate buffer (pH 7.0). The resulting solution was used as a crude enzyme solution.
In the above-described reaction solution composition, a reaction using D-sorbitol as a substrate was performed, and the presence or absence of the activity was examined by measuring the color development of ABTS through visual observation.
Liquid culture was performed, and the enzyme activity of the crude enzyme solution was measured from day 2 to day 10 of the culture. As a result, the enzyme activity was not detected in either case of the liquid media obtained by adding (1) PDB and (2) a yeast extract, and D-mannitol (0.5%) or D-sorbitol (0.5%). These results suggested that this enzyme is an enzyme favorably produced in a solid culture medium such as a wheat bran culture medium, and also suggested that the substrate-induced production does not occur. It is known that a filamentous fungus generally produces a wide variety of enzymes by solid culture more than by liquid culture, and therefore, this enzyme is considered to be no exception.
An enzymatic reaction was performed using D-sorbitol as a substrate, and the resulting reaction product was analyzed by using HPLC.
The A strain which is a polyol oxidase-producing microorganism was used.
In a desalting treatment of an HPLC sample, Amberlite manufactured by Organo Co., Ltd. and Diaion manufactured by Mitsubishi Chemical Co., Ltd. were used.
The culture was performed in the same manner as described above.
The preparation of an enzyme solution was performed in the same manner as described above.
The crude extract solution and D-sorbitol were reacted with each other at room temperature for 24 hours according to the composition shown in Table 4, and the reaction was stopped by boiling. It is considered that dissolved oxygen decreases as the reaction proceeds, and therefore, air was injected into the reaction solution using a pipette. Further, a control was prepared such that immediately after mixing the reaction solution, the reaction was stopped by boiling, and another control was prepared such that the reaction was allowed to proceed for 24 hours in the same manner using a thermally treated crude enzyme solution.
After the enzymatic reaction was stopped by boiling, the reaction solution was centrifuged at 13,000 rpm for 10 minutes to remove fine particles, and the supernatant was collected. To the supernatant, a small amount of a mixture obtained by mixing Diaion and Amberlite at a ratio of 1:2 was added, and the resulting mixture was left to stand for 1 hour to desalt the reaction solution. The supernatant thereof was collected and centrifuged at 13,000 rpm for 5 minutes. Thereafter, the resulting solution was placed in a 0.22-μm filter (Ultrafree-MC) and centrifuged at 6000 rpm for 5 minutes. The total amount of the solution passed through the filter was collected and injected into a dedicated HPLC tube (sample cup IA) such that air bubbles do not enter the tube. Then, an analysis was performed by using an autosampler.
By using GL-C611 column chromatography (Hitachi Chemical Co., Ltd.), detection was performed with a differential refractometer using an aqueous 10−4 M sodium hydroxide solution as a mobile phase.
The enzymatic reaction was performed for 24 hours by using D-sorbitol as a substrate, and its reaction product was analyzed by using HPLC. As a result, as shown in
These results strongly suggested that the reaction product of D-sorbitol and the enzyme produced by the A strain is gulose which is a rare sugar. Further, although an optical activity was not measured, when considering that sorbitol was used as the substrate, the product is structurally considered to be L-gulose. Although the oxidation reaction is an irreversible reaction, the amount of (L-) gulose produced after the 24-hour reaction was as small as about 3%. It is considered that this is because the crude enzyme solution was used and also the oxygen concentration in the reaction solution was insufficient.
[4. Examination of Conditions for Production of Polyol Oxidase Derived from Strain Belonging to Genus Penicillium (A Strain)]
A method capable of more efficiently obtaining a crude enzyme solution of a polyol oxidase derived from the genus Penicillium was examined as to whether or not the enzyme was produced in a liquid culture, whether or not the enzyme production was induced by the addition of a substrate, and so on.
A strain which belongs to the genus Penicillium and produces a polyol oxidase (A strain) was used.
The microorganism was suspended in 5 mL of sterile water, and a 1 mL portion of the resulting suspension was inoculated into 100 mL of each of liquid culture media obtained by adding (1) PDB and (2) a yeast extract, and D-mannitol (0.5%) or D-sorbitol (0.5%), followed by shaking incubation at 28° C.
The microorganism cultured by shaking in a PDB culture medium at 28° C. for 3 days was inoculated in an amount of 5 mL into each of a culture medium containing no D-mannitol and a culture medium containing D-mannitol, followed by static incubation at 28° C.
A wheat bran culture medium having each of the following compositions was used, and the microorganism was inoculated and cultured in the same manner as in the case of the addition of a sugar to a wheat bran culture medium. The ratio of wheat bran to water is shown in Tables 7 and 8.
Starting from day 2 of the culture, a 500 μL portion was taken out from each culture solution, and centrifuged at 12,000 rpm and 4° C. for 10 minutes. Then, the supernatant was collected and dialyzed with a 10 mM potassium phosphate buffer (pH 7.0). The resulting solution was used as a crude enzyme solution.
In the same manner as described above, a crude enzyme solution was obtained. However, the buffer was changed to a 10 mM potassium phosphate buffer (pH 8.0).
Extraction was performed in the same manner as the examination of the substrate-induced production of the enzyme, and a crude enzyme solution was obtained.
In the above-described reaction solution composition, a reaction using D-mannitol as a substrate was performed, and the presence or absence of the activity was examined by measuring the color development of ABTS through visual observation.
The measurement of the activity of the present enzyme was performed by measuring an increase in absorbance at 420 nm using the same peroxidase method as described above. The enzymatic reaction was initiated by adding D-mannitol, and the absorbance was measured over time for minutes under the reaction conditions of 30° C. using a spectrophotometer U-2010 manufactured by Hitachi Co., Ltd. The reaction was performed by preparing the reaction solution so that the total amount thereof was 1 mL as shown in Table 9. “1 unit” was defined as the amount of the enzyme required to increase the absorbance at 420 nm by 1 for 1 minute.
The measurement was performed in the same manner as in the case of the addition of a sugar to a wheat bran culture medium.
The enzyme activity of the crude enzyme solution was measured from day 2 to day 10 of the culture. As a result, the enzyme activity was not detected in either case of the liquid media. These results suggested that this enzyme is an enzyme favorably produced in a solid culture medium such as a wheat bran culture medium. Further, the growth rate in the liquid culture medium was equal to or faster than that in the solid culture medium, and therefore, it was suggested that the conditions for the production of the enzyme does not depend on the mycelial growth.
The extraction of the crude enzyme solution was performed from day 6 to day 18 of the culture and the measurement of the enzyme activity was performed, and the results are shown in
The extraction of the crude enzyme solution was performed from day 6 to day 12 of the culture and the measurement of the enzyme activity was performed, and the results are shown in
Prior to purification, the stability of the present enzyme in the crude enzyme solution was examined.
A strain which belongs to the genus Penicillium and produces a polyol oxidase (A strain) was used.
As ammonium sulfate used in ammonium sulfate fractionation, one manufactured by Nacalai Tesque, Inc. was used.
In a 500-mL Erlenmeyer flask, 20 g of wheat bran and 40 mL of water were added and mixed well using a spatula. Then, the flask was sealed with a cotton plug, and the mixture in the flask was sterilized in an autoclave and used as a wheat bran culture medium. A culture solution obtained by shaking culture using PDB for 3 days was inoculated in an amount of 5 mL into the flask, followed by static incubation at 28° C. for 10 days.
A crude extract solution was obtained in the same manner as described above. However, the buffer was changed to a 10 mM potassium phosphate buffer (pH 8.0). A half the crude extract solution was used as the crude enzyme solution, and the residual enzyme activity was measured at times of 0 hour, 5 hours, and 24 hours after the crude enzyme solution was left to stand on ice. The rest of the crude extract solution was used for preparing a 50 to 70% saturated ammonium sulfate fraction by ammonium sulfate precipitation, and the residual enzyme activity was measured at times of 0 hour, 5 hours, and 24 hours after the saturated ammonium sulfate fraction was left to stand on ice in the same manner.
The enzyme activity was measured in the same manner as described above.
The results of the measurement of the enzyme activity are shown in
The residual enzyme activity after the crude enzyme solution was left to stand on ice for 5 hours was about 5%, and the enzyme activity was completely lost after 24 hours. However, the 50 to 70% saturated ammonium sulfate fraction prepared by ammonium sulfate precipitation had a residual activity of 60% even after it was left to stand on ice for 24 hours. This suggested that in the crude enzyme solution, a high protease activity exists, and the protease can be removed to some extent by ammonium sulfate fractionation.
[6. Purification of Polyol Oxidase Derived from Microorganism Belonging to Genus Penicillium]
A strain which belongs to the genus Penicillium and produces a polyol oxidase (A strain) was used.
In a 500-mL Erlenmeyer flask, 20 g of wheat bran and 30 mL of water were added and mixed with each other. Then, the flask was sealed with a cotton plug, and the mixture in the flask was sterilized in an autoclave and used as a wheat bran culture medium, and the microorganism was cultured at 28° C. for 9 days.
The measurement of the activity of the present enzyme was performed by measuring an increase in absorbance at 420 nm using the same peroxidase method as described above. The enzymatic reaction was initiated by adding D-mannitol, and the absorbance was measured over time for 10 minutes under the reaction conditions of 30° C. using a spectrophotometer U-2010 manufactured by Hitachi Co., Ltd. The reaction was performed by preparing the reaction solution so that the total amount thereof was 1 mL as shown in Table 11. “1 unit” was defined as the amount of the enzyme required to increase the absorbance at 420 nm by 1 for 1 minute.
The quantitative determination of a protein was performed by using a protein assay CBB solution manufactured by Nacalai Tesque, Inc. according to the Bradford method. In the preparation of a calibration curve, bovine serum albumin was used as a standard protein. In the measurement of an absorbance, a spectrophotometer U-3200 manufactured by Hitachi Co., Ltd. was used.
SDS-PAGE was performed by adjusting a separation gel at 15% and a concentration gel at 4% according to the Laemmli method. As the molecular weight marker, Protein Marker Low Range manufactured by SIGMA Co., Ltd. was used.
Native-PAGE was performed by adjusting a separation gel at 15% and a concentration gel at 4% according to the Davis method. Activity staining was performed in such a manner that the gel after the electrophoresis was washed with water, and then immersed in a solution having the same composition shown in Table 11 in a light shielding state.
The purification of the enzyme was performed on ice or at 4° C. throughout the following procedures (1) to (4). Further, as the buffer, a 10 mM potassium phosphate buffer (pH 8.0) was used.
To the culture medium after culture, 60 mL of the buffer was added and mixed well, and the resulting mixture was left to stand on ice for 1 hour or more. Then, the mixture was squeezed with a gauze pad to extract the enzyme in the culture medium. The resulting extract solution was centrifuged at 4° C. and 800 rpm for 10 minutes to remove fine particles, and the resulting solution was used as a crude enzyme solution.
First, ammonium sulfate was added to the crude enzyme solution to bring the solution to 50% saturation and dissolved therein, followed by stirring at 4° C. for 3 hours. The resulting solution was centrifuged at 4° C. and 8,000 rpm for 10 minutes. The thus obtained supernatant was collected, and ammonium sulfate was added thereto to bring the supernatant to 70% saturation and dissolved therein, followed by stirring overnight at 4° C. The resulting solution was centrifuged at 4° C. and 8,000 rpm. for 10 minutes, and the resulting precipitate was dissolved in a buffer brought to 40% saturation with ammonium sulfate.
A sample was subjected to a TOYOPEARL Butyl-650M column (diameter: 2.0 cm, length: 8.0 cm) equilibrated with a buffer brought to 40% saturation with ammonium sulfate. The column was washed with 100 mL of a potassium phosphate buffer brought to 40% saturation with ammonium sulfate, and the enzyme was eluted with buffers in an amount of 100 mL each by stepwise changing the saturation concentration of ammonium sulfate in the buffers to 30% and 20%, and a fraction having an activity was collected. Ammonium sulfate contained in the collected fraction was removed by dialysis overnight with a buffer at 4° C. In the measurement of an increase in absorbance at 420 nm at this time, a spectrophotometer U-3200 manufactured by Hitachi Co., Ltd. was used, and the absorbance was not measured over time, but the value of an absorbance at one point when one minute passed after the initiation of the reaction was measured.
A sample was subjected to a TOYOPEARL DEAE-650M column (diameter: 1.0 cm, length: 5.0 cm) equilibrated with a buffer. The column was washed with 50 mL of a buffer, and the enzyme was eluted with buffers in an amount of 50 mL each by stepwise changing the concentration of sodium chloride in the buffers to 0 mM, 100 mM, 150 mM, and 200 mM, and a fraction having an activity was collected. Sodium chloride contained in the collected fraction was removed by dialysis overnight with a buffer at 4° C. Also in the measurement of an increase in absorbance at 420 nm at this time, a spectrophotometer U-3200 manufactured by Hitachi Co., Ltd. was used, and the absorbance was not measured over time, but the value of an absorbance at one point when one minute passed after the initiation of the reaction was measured.
A sample was concentrated to about 1 mL by using Amicon Ultra-15 (manufactured by Millipore Co., Ltd.), and the resulting concentrate was subjected to Hiprep Q XL (GE Healthcare) equilibrated with 200 mL of a buffer. The enzyme was eluted by applying a linear concentration gradient of sodium chloride in the buffer from 0 to 0.5 M, and a fraction having an activity was collected. Sodium chloride contained in the collected fraction was removed by dialysis overnight with a buffer at 4° C. Also in the measurement of an absorbance at this time, a spectrophotometer U-3200 manufactured by Hitachi Co., Ltd. was used, and the value of an absorbance when one minute passed after the initiation of the reaction was measured.
A sample was subjected to HiLoad 16/10 Superdex 200 prep grade (GE Healthcare) equilibrated with 200 mL of a buffer supplemented with 0.15 M NaCl. In the measurement of an absorbance at this time, a spectrophotometer U-300 manufactured by Hitachi Co., Ltd. was used, and the value of an absorbance when 5 minutes passed after the initiation of the reaction was measured.
The purification of the polyol oxidase was performed in the order of TOYOPEARL Butyl-650M column chromatography (hydrophobic column chromatography), TOYOPEARL DEAE-650M column chromatography (weak anion exchange column chromatography), Hiprep Q XL column chromatography (strong anion exchange column chromatography), and HiLoad 16/10 Superdex 200 prep grade column chromatography (gel filtration column chromatography).
The elution pattern of the TOYOPEARL Butyl-650M column chromatography is shown in
The elution pattern of the TOYOPEARL DEAE-650M column chromatography is shown in
By the subsequently used Hiprep Q XL column chromatography, an elution pattern as shown in
[7. Analysis of Properties of Polyol Oxidase Derived from Strain Belonging to Genus Penicillium (A Strain)]
The properties of the polyol oxidase were analyzed using the purified enzyme solution obtained by the above-described methods.
A purity assay was performed by performing Native-PAGE followed by activity staining and GBB staining.
As described above, since HiLoad 16/10 Superdex 200 prep grade column chromatography (gel filtration column chromatography) was used in the final stage of the purification, also the calculation of the molecular weight was carried out simultaneously. The molecular weight of the enzyme was measured by using cytochrome C, carbonic anhydrase, albumin, and alcohol dehydrogenase from the Gel Filtration Molecular Weight Markers manufactured by SIGMA Co., Ltd. as the molecular weight markers. Further, according to the results of SDS-PAGE of the purified enzyme, the subunit structure was assayed.
As the composition of the reaction solution, substantially the same composition as shown in Table 11 was employed. The examination was performed at 10° C., 20° C., 30° C., 40° C., 50° C., and 60° C. As the substrate, D-mannitol was used, and an increase in absorbance at 420 nm caused by the reaction under the conditions of 30° C. was measured using a spectrophotometer U-2810 manufactured by Hitachi Co., Ltd. The reaction solution was prepared so that the total amount thereof was 1 mL, and the amount of the enzyme required to increase the absorbance at 420 nm by 1.0 for 1 minute was defined as “1 unit”.
Each of buffers at various pH values was mixed with the enzyme to give a final concentration of 0.1 M, and the resulting mixture was left to stand on ice for 15 hours, and then, the residual enzyme activity was measured. As the buffers, citrate buffers at pH 2.0, 3.0, 4.0, 5.0, and 6.0, potassium phosphate buffers at pH 6.0, 7.0, and 8.0, glycine-NaOH buffers at pH 8.0 and 9.0, and Tris-HCl buffers at pH 8.0, 9.0, and 10.0 were used. The measurement of the activity of this enzyme was performed by using D-mannitol as a substrate and measuring an increase in absorbance at 420 nm caused by the reaction under the conditions of 30° C. using a spectrophotometer U-2010 manufactured by Hitachi Co., Ltd. Further, in the enzyme in the reaction solution, each of the buffers at various pH values added for testing the stability was contained. In order to perform the reaction at a uniform pH in all the cases, to the reaction solution, the potassium phosphate buffer (pH 8.0) was added in a larger amount than in the case of the common composition of the reaction solution so as to stabilize the reaction under the conditions of pH 8.0 (Table 13).
As the composition of the reaction solution, the same composition as in the examination of the temperature stability was employed. An increase in absorbance at 420 nm in 10 minutes at 10° C., 20° C., 30° C., 40° C., 50° C., and 60° C. was measured, respectively. In the measurement of the absorbance, a spectrophotometer U-3208 manufactured by Hitachi Co., Ltd. was used.
The composition of the reaction solution is shown in Table 14. As the buffers at various pH values, the same buffers as used in the examination of the pH stability were used. The reaction solution was prepared so that the total amount thereof was 1 mL, and the concentration of the buffer in the reaction solution was adjusted to give a final concentration of 50 mM. In the measurement of the activity, an increase in absorbance at 420 nm caused by the reaction under the conditions of 30° C. was measured using a spectrophotometer U-2010 manufactured by Hitachi Co., Ltd. Further, in a reaction solution, a peroxidase which is an enzyme was contained. Therefore, the peroxidase was added in a larger amount than usual so as to avoid the effect of this peroxidase on the pH.
When the properties of the present enzyme were examined, the following results were obtained.
As shown in
As shown in
When the stability of the present enzyme was examined at temperatures between 10° C. and 60° C., it was revealed that as shown in
When the enzyme activity was measured at pH values between 2.0 and 10.0, it was found that as shown in
When the enzyme activity was measured at temperatures between 10° C. and 60° C. as shown in
When the measurement for the reaction in each of the enzyme reaction solutions at pH values between 2.0 and 10.0 was performed as shown in
A comparison of the enzymatic and chemical protein properties was made between the present enzyme and known polyol oxidases and oxidases produced specifically in a wheat bran culture medium.
The properties of known polyol oxidases and the properties of the present enzyme are shown in Table 15. The present enzyme has a very large molecular weight and lower temperature stability than the other polyol oxidases. Further, there have been no reported cases that polyol oxidases are heterodimeric enzymes. These points more strongly supported the novelty of the present enzyme. Further, the properties of known oxidases produced specifically in a wheat bran culture medium and the properties of the present enzyme are shown in Table 16. The present enzyme and the polyol oxidases produced specifically in a wheat bran culture medium have similar pH stability and optimum reaction temperature, however, in the same manner as the case where the comparison was made with the known polyol oxidases, the present enzyme has lower temperature stability than the other oxidases. However, a glutathione oxidase and a glycerol oxidase derived from a microorganism belonging to the genus Penicillium in the same manner as the present enzyme are heterodimeric enzymes, and therefore are similar in the respect that they have a large molecular weight. Due to this, it is considered that microorganisms belonging to the genus Penicillium extracellularly produce and secrete heterodimeric enzymes more than microorganisms belonging to the other genera in a wheat bran culture medium. Further, in the case of the glycerol oxidase derived from a microorganism belonging to the genus Penicillium, since this enzyme is an enzyme binding to a cell surface, there has been reported that by adding a surfactant to a buffer when extracting the enzyme, the enzyme activity was extremely increased.
The substrate specificity of the present enzyme determined by using a partially purified enzyme was as shown in Table 17 below. Among the polyols used in the assay, the activity of the enzyme was high for D-arabitol, erythritol, D-mannitol, and D-sorbitol, which are listed in descending order of activity, and a high activity was not observed for the other polyols.
The structures of the D-forms of polyols are shown in
Both of the substrate specificity and the substrate recognition mechanism of the present enzyme are different from those of conventionally reported polyol oxidases, and therefore, the present enzyme is a novel oxidase.
The reaction products of the polyol oxidase were analyzed by HPLC. As a result, products when using D-mannitol, D-arabitol, and D-sorbitol as substrates were identified. Erythritol is a tetrose, and it was difficult to identify the product at this stage, and therefore, the analysis was not performed at this time. It was confirmed that from D-mannitol, mannose was produced. Although an optical activity was not measured, when considering that D-mannitol was used as the substrate, the product is structurally considered to be D-mannose.
According to the results of the HPLC analysis of the enzyme reaction solution when using D-arabitol as a substrate, it was revealed that the product from D-arabitol is lyxose. Although an optical activity of the product was not measured also in this case, the reaction product is structurally considered to be D-lyxose. The structural formula of this reaction is shown in
Next, according to the results of the HPLC analysis of the reaction product when using D-sorbitol as a substrate, it was confirmed that gulose was produced from D-sorbitol. Although an optical activity was not measured also in this case, since gulose was produced from D-sorbitol, structurally, L-gulose is considered to be produced. The structural formula of this reaction is shown in
Here, according to the fact that the present enzyme catalyzes the oxidation of the hydroxy group at position 6 of a polyol, an oxidation reaction using as a substrate, erythritol which was not analyzed by HPLC at this time was inferred. When the hydroxy group at position 6 of erythritol is oxidized, L-erythrose is expected to be produced. This strongly suggested that by the oxidation reaction of the present enzyme, the following three rare sugars: D-lyxose, L-gulose, and L-erythrose are produced.
When the conventional production methods for these rare sugars were examined, it was found that D-lyxose is produced from D-glucose through D-arabitol and D-xylose by a multistep reaction (NPL 2). Moreover, since an isomerase is used, it is difficult to say that D-lyxose to be produced is obtained in high yield. Also L-gulose is produced from L-sorbose by using an isomerase. As for L-erythrose, erythritol is subjected to oxidative fermentation using a membrane-bound meso-erythritol dehydrogenase present on the outer surface layer of the cell membrane of a strain belonging to the genus Gliconobacter, thereby producing L-erythrulose, and thereafter L-erythrose is produced by using an isomerase. As described above, the production of such rare sugars includes a multistep reaction system, and also the reaction uses an isomerase, and therefore, a yield of 100% cannot be expected. In this respect, the present enzyme catalyzes a one-step reaction and also the oxidation reaction is an irreversible reaction, and therefore, it is expected that the present enzyme enables the mass production of such rare sugars in a yield of almost 100%.
In order to identify a polyol oxidase-producing microorganism, the sequence of 18S rDNA was intended to be determined. The 18S rDNA is a structure specifically seen in fungal microorganisms and is not present in Actinomyces or bacteria. The structure of the 18S rDNA is shown in
The nucleotide sequences of the primers prepared in this study are shown in Table 18.
(1) The preparation of 18S_F1 primer was performed with reference to the evaluation of gene indices for identifying Byssochlamys spp. (NPL 3 and NPL 4).
(2) The preparation of 18S_F2 and ITS_R1 primers was performed with reference to the homepage of BEX Co., Ltd. (http://www.bexnet.co.jp/product/microbialprimer.html).
18S_F1 was prepared so that it has a sequence homologous to a region of a sequence which is located downstream of the 18S rDNA and common to a wide range of fungi; 18S_F2 was prepared so that it has a sequence homologous to a region of a sequence of the 18S rDNA located immediately upstream of the ITS region; and ITS_R1 was prepared so that it has a sequence homologous to a region located in the middle of 5.8S (
1) Liquid-cultured microbial cells were placed in a mortar, and liquid nitrogen was added thereto, and then, the microbial cells were ground and transferred to a microtube.
2) 600 μL of a 2% CTAB solution was added thereto and mixed therewith by inverting the microtube repeatedly.
3) The tube was transferred to a heat block, which was heated to 65° C., and incubated for 30 minutes, followed by centrifugation at 12,000 rpm for 10 minutes.
4) The supernatant was collected, and an equal amount of a mixture of chloroform/isoamyl alcohol (24:1) was added thereto, and the resulting mixture was gently stirred for 5 minutes.
5) The resulting mixture was centrifuged at 12,000 rpm for 15 minutes, and then, an upper aqueous phase was collected.
6) The procedures described in 4) and 5) were repeated once, and an aqueous phase was transferred to a new tube.
7) 1 to 1.5 volume of a 1% CTAB solution was added thereto and mixed therewith by inverting the tube repeatedly. Thereafter, the resulting mixture was left to stand at room temperature for 1 hour, followed by centrifugation at 8,000 rpm for 10 minutes.
8) The supernatant was discarded, and 400 μL of 1 M CsCl was added to the tube, and the residue was completely dissolved therein.
9) 800 μL of 100% ethanol was added thereto and mixed therewith by inverting the tube repeatedly. Thereafter, the resulting mixture was left to stand at −20° C. for 20 minutes or more, followed by centrifugation at 12,000 rpm for 5 minutes.
10) The supernatant was discarded, and 400 μL of 70% ethanol was added to the precipitate, followed by centrifugation at 12,000 rpm for 5 minutes.
11) The supernatant was discarded, and the precipitate was air-dried using a vacuum dryer. Then, the dried precipitate was dissolved in 20 μL of a TE buffer and treated at 37° C. for 1 hour.
12) 100 μL each of phenol and chloroform was added thereto, followed by centrifugation at 12,000 rpm for 10 minutes, and the supernatant was collected.
13) An equal amount of chloroform was added thereto, followed by centrifugation at 12,000 rpm for 10 minutes, and the supernatant was collected.
14) Ethanol precipitation was performed, followed by centrifugation at 12,000 rpm for 10 minutes, and thereafter, the resulting precipitate was dissolved in 30 μL of a TE buffer.
PCR was performed using the 18S_F1 primer and the ITS_R1 primer, and also using the total DNA of the polyol oxidase-producing microorganism obtained in (1) as the template. The conditions for the PCR were as follows: denaturation was performed at 95° C. for 3 minutes, followed by 33 cycles, each cycle consisting of heat treatments at 95° C., 50° C., and 75° C. The PCR reaction solution shown in Table 19 was used.
Fragments amplified by the PCR were electrophoresed, followed by gel extraction. Thereafter, a sequence reaction was performed using the respective primers (
As a result of performing electrophoresis in an agarose gel after the PCR, it was confirmed that a fragment having a target size was amplified (
After the sequence reaction, an analysis was performed. As a result, a 250-bp base sequence was found by the sequence reaction using the 18S_F1, and a 180-bp base sequence was found by the reaction using the ITS_R1. Further, (2) a 159-bp sequence was determined by the sequence reaction using the 18S_F2. As a result of the respective analyses, the full length of the PCR-amplified fragment of the polyol oxidase-producing microorganism could not be decoded. However, when a microorganism having a high homology to the sequences obtained in the respective cases was searched, the 250-bp base sequence obtained by using the 18S_F1 primer had a homology of 94% to the genus Penicillium (
In
Among the polyol oxidases produced by microorganisms which have been reported so far, there have been almost no reports of an extracellular enzyme. Also from this point, the present enzyme is considered to be a highly novel enzyme.
The present invention provides a novel polyol oxidase, and particularly, the polyol oxidase is characterized by an ability to produce rare sugars from substrates. Rare sugars are sugars which do not exist at all or exist in a very small amount in nature. Although there were many unclear points with respect to the production techniques, physiological actions, chemical properties, etc. of rare sugars, recently, the mass production techniques for some rare sugars have been established, and also the physiological activities thereof have been elucidated, and thus, the practical application thereof in a wide field of sweeteners, agricultural chemicals, reagents, industrial materials, etc. has been expected. The provision of the polyol oxidase of the present invention responds to such expectations in the industry, and will be a means useful for new development of the measurement of rare sugars and the efficient production method therefor.
| Number | Date | Country | Kind |
|---|---|---|---|
| 2011-236194 | Oct 2011 | JP | national |
| Filing Document | Filing Date | Country | Kind | 371c Date |
|---|---|---|---|---|
| PCT/JP2012/077783 | 10/26/2012 | WO | 00 | 4/25/2014 |
