Patent Application
20220135552
This invention relates to tri-aryl pyrrole derivatives and their analogues, methods for their preparation, pharmaceutical compositions containing them and their use in treating diseases such as cancer.
The protein expressed by the normal KRAS gene performs an essential function in normal tissue signalling. The mutation of a KRAS gene by a single amino acid substitution, and in particular a single nucleotide substitution, is responsible for an activating mutation which is an essential step in the development of many cancers. The mutated protein that results is implicated in various malignancies, including lung adenocarcinoma, mucinous adenoma, ductal carcinoma of the pancreas and colorectal carcinoma. Like other members of the Ras family, the KRAS protein is a GTPase and is involved in many signal transduction pathways.
KRAS acts as a molecular on/off switch. Once it is turned on, it recruits and activates proteins necessary for the propagation of growth factor and other receptors' signal such as c-Raf and PI-3 Kinase. Normal KRAS binds to GTP in the active state and possesses an intrinsic enzymatic activity which cleaves the terminal phosphate of the nucleotide converting it to GDP. Upon conversion of GTP to GDP, KRAS is turned off. The rate of conversion is usually slow but can be sped up dramatically by an accessory protein of the GTPase-activating protein (GAP) class, for example RasGAP. In turn KRAS can bind to proteins of the Guanine Nucleotide Exchange Factor (GEF) class, for example SOS1, which forces the release of bound nucleotide. Subsequently, KRAS binds GTP present in the cytosol and the GEF is released from ras-GTP. In mutant KRAS, its GTPase activity is directly removed, rendering KRAS constitutively in the active state. Mutant KRAS is often characterised by mutations in codons 12, 13, 61 or mixtures thereof.
The viability of cancer cells carrying a mutant KRAS is known to be dependent on Polo-Like Kinase 1 (PLK1) and it has been shown that silencing PLK1 leads to the death of cells containing mutant KRAS (see Luo et al., Cell. 2009 May 29; 137(5): 835-848). Compounds that inhibit PLK1 should therefore be useful in treating cancers that arise from KRAS mutations, but current kinase inhibitors designed to bind to the conserved ATP-binding domain of PLK1 may be too unselective versus other kinases to access this mode-of-action.
PLK1 is a serine/threonine kinase consisting of 603 amino acids and having a molecular weight of 66 kDa and is an important regulator of the cell cycle. In particular, PLK1 is important to mitosis and is involved in the formation of and the changes in the mitotic spindle and in the activation of CDK/cyclin complexes during the M-phase of the cell cycle.
All Polo-like kinases contain an N-terminal Serine/Threonine kinase catalytic domain and a C-terminal region that contains one or two Polo-boxes (Lowery et al., Oncogene, (2005), 24, 248-259). For Polo-like kinases 1, 2, and 3, the entire C-terminal region, including both Polo-boxes, functions as a single modular phosphoserine/threonine-binding domain known as the Polo-box domain (PBD). In the absence of a bound substrate, the PBD inhibits the basal activity of the kinase domain. Phosphorylation-dependent binding of the PBD to its ligands releases the kinase domain, while simultaneously localizing Polo-like kinases to specific subcellular structures.
It has been shown (Reindl et al., Chemistry & Biology, 15, 459-466, May 2008 that, because PLKL1 localizes to its intracellular anchoring sites via its polo-box domain, the action of PLK1 can be inhibited by small molecules which interfere with its intracellular localization by inhibiting the function of the PBD.
Tumour protein p53 functions as a tumour suppressor and plays a role in apoptosis, genomic stability and inhibition of angiogenesis. It is known that tumours with both p53-deficiency and high PLK1 expression may be particularly sensitive to PLK1 inhibitors (Yim et al., Mutat Res Rev Mutat Res, (2014). 761, 31-39).
The evidence in the literature thus suggests that small molecules that bind to and inhibit the function of the PBD should be effective inhibitors of PLK1 kinase and therefore should also be useful in the treatment of cancers arising from KRAS mutations. In particular, since PBD domains only reside in PLKs, the potential for inhibitors designed to this domain to have greater selectivity over previous ATP-competitive inhibitors, may enable a greater ability to target KRAS mutant and p53 deficient cancers.
The identification and development of drugs for treating primary brain cancers has proved to be particularly challenging. Targeted cancer therapies, and in particular therapies using protein kinase inhibitors, have been a major focus for pharmaceutical and biotechnology companies (Nature Reviews Clinical Oncology 2016, 13, 209-227). However, although over thirty kinase inhibitors have been approved for use in oncology, none of these have been for the treatment of primary brain cancer. A particular problem has been that most of the approved kinase inhibitor oncology drugs lack the necessary drug substance qualities to achieve the brain exposure needed if they are to be of use in the treatment of brain cancer [JMC 2016, 59(22), 10030-10066].
The alkylating agent temozolomide (Temodar®, Temodal®) is currently the first line treatment for the brain cancer glioblastoma multiforme and is frequently used in combination with radiation therapy. However, drug resistance is a major problem in the management of glioblastoma and therefore limits the usefulness of temozolomide. At the present time, therefore, malignant glioblastoma remains incurable.
Polo like kinase 1 (PLK1) is overexpressed in a range of tumour types including glioblastoma multiforme (Translational Oncology 2017, 10, 22-32). Furthermore, recent studies have shown that PLK1 drives checkpoint adaptation and resistance to temozolomide in glioblastoma multiforme [Oncotarget 2017, 8, 15827-15837].
Thus, compounds that inhibit PLKL1, but without inducing drug resistance, and which exhibit good brain exposure would be expected to be useful in the treatment of glioblastoma multiforme and other brain cancers.
The present invention provides compounds that have anti-cancer activity and have good brain exposure after oral dosing, making them good candidates for the treatment of brain cancers. The compounds are active against glioblastoma cell lines and are believed to act as inhibitors of the Polo Box Domain of PLK1 kinase. The compounds are also active against mutant-RAS cancer cell lines (such as HCT116) and should also be useful in the treatment of cancers arising from KRAS mutations.
According to a first Embodiment (Embodiment 1.1), the invention provides a compound of formula (1):
or a pharmaceutically acceptable salt or tautomer thereof, wherein
Z is a 5-membered heteroaryl ring containing one or two nitrogen ring members and optionally one further heteroatom ring member selected from N and O;
ring X is 6 membered carbocyclic or heterocyclic aromatic ring containing 0, 1 or 2 nitrogen heteroatom ring members;
ring Y is a 6 membered carbocyclic ring or a 5- or 6-membered heterocyclic aromatic ring containing 1 or 2 heteroatom ring members selected from N, O and S;
Ar1 is a monocyclic 5- or 6-membered aromatic ring, optionally containing 0, 1 or 2 heteroatom ring members selected from N, O and S and being optionally substituted with one or more substituents R5;
m is 0, 1 or 2;
n is 0, 1 or 2;
R1 is selected from:
provided that when a substituent R4 is present at the meta or para-position of the ring X, and/or when an atom or group other than hydrogen is present at the ortho-position of the ring Y, then R1 is additionally selected from hydrogen and fluorine;
Hyd1 and Hyd2 are the same or different and are C1-4 hydrocarbon groups;
R2 is selected from hydrogen and a C1-4 hydrocarbon group;
R3 is selected from hydrogen and a C1-4 hydrocarbon group;
R4 is selected from:
R5 is selected from halogen; O—Ar2; cyano, hydroxy; amino; Hyd1-SO2— and a non-aromatic C1-3 hydrocarbon group where 0, 1 or 2 but not all of the carbons in the hydrocarbon group are optionally replaced with a heteroatom selected from N, O and S and where the hydrocarbon group is optionally substituted with one or more fluorine atoms;
Ar2 is a phenyl, pyridyl or pyridone group optionally substituted with 1 or 2 substituents selected from halogen; cyano and a C1-4 hydrocarbon group optionally substituted with one or more fluorine atoms;
R6 is selected from halogen, cyano, nitro and a group Q1-Ra—Rb;
Q1 is absent or is a C1-6 saturated hydrocarbon linker;
Ra is absent or is selected from O; C(O); C(O)O; CONRc; N(Rc)CO; N(Rc)CONRc, NRc; S; SO; SO2; SO2NRc; and NRcSO2;
Rb is selected from:
Cyc1 is a non-aromatic 4-7 membered carbocyclic or heterocyclic ring group containing 0, 1 or 2 heteroatom ring members selected from N, O and S and being optionally substituted with one or more substituents selected from hydroxyl; amino; (Hyd2)NH; (Hyd2)2N; and a C1-5 hydrocarbon group where 0, 1 or 2 of the carbons in the hydrocarbon group are replaced with a heteroatom selected from N, O and S, the hydrocarbon group being optionally substituted with one or more fluorine atoms or by a 5- or 6-membered heteroaryl group containing 1 or 2 heteroatom ring members selected from N and O; Rc is selected from hydrogen and a C1-4 non-aromatic hydrocarbon group; and R7 is selected from R4.
In formula (1), Z is a 5-membered heteroaryl ring containing one or two nitrogen ring members and optionally one further heteroatom ring member selected from N and O.
It will be appreciated that when the 5-membered heteroaryl ring Z contains a second heteroatom ring member, for example when it is a pyrazole or isoxazole, one or both of R2 and R3 will be absent. Accordingly, in each of the above and following aspects and embodiments where the 5-membered heteroaryl ring is other than a pyrrole, the definitions are to be taken as including compounds wherein one or both of R2 and R3 are absent.
Particular and preferred aspects and embodiments of the invention are set out below in Embodiments 1.1A to 1.183.
1.1A A compound according to Embodiment 1.1 provided that the compound is other than:
(i) a compound wherein R1 is methyl, and R4 is a 4-cyano or 4-carbamoyl group;
(ii) a compound wherein R6 is hydroxy, methoxymethyl or unsubstituted or fluoro-substituted C1-8 alkoxy (e.g. trifluoromethoxy);
(iii) a compound wherein the ring Z is a (2H)-pyrazole ring; Ar1 is unsubstituted phenyl; R2 is methyl; R3 is absent; the ring Y is phenyl; n is 0; R6 is SO2NH2; the ring X is phenyl; R1 is hydrogen; m is 0 or 1; and R4 is 4-methoxy, 4-chloro or 4-bromo;
(iv) the compounds 3-phenyl-4-(3-trifluoromethylphenyl)-5-(2-methoxycarbonylphenyl)-isoxazole, 3-(4-chlorophenyl)-4-(4-chlorophenyl)-5-(2-methoxycarbonylphenyl)-isoxazole;
(v) a compound wherein the ring Z is an isoxazole ring; Ar1 is an unsubstituted 4-pyridyl group attached to the isoxazole 3-position; R2 and R3 are both absent; the ring X is phenyl; R1 is hydrogen; m is 1; R4 is 4-fluoro; and either Y is phenyl, n is 0 and R6 is 4-methoxy, ethoxy or 4-dimethylamino, or Y is 4-pyridyl, n is 0 and R6 is 2-acetylamino (acetylamino ortho with respect to the pyridine nitrogen atom);
(vi) a compound wherein the ring Z is an isoxazole ring and Ar1 is an unsubstituted 4-pyridyl group attached to the isoxazole 3-position; and R2 and R3 are both absent;
(vii) a compound wherein the ring Z is a pyrrole ring; Ar1 is unsubstituted 2-thienyl or phenyl group attached to the 2-position of the pyrrole ring; R2 and R3 are both hydrogen; Y is a 2-thienyl group; n is 0; R6 is a CHO or CO2Me group attached to the 5-position of the 2-thienyl group; X is phenyl; R1 is hydrogen; m is 1; and R4 is 4-fluoro or 4-methoxy;
(viii) a compound wherein Z is an isoxazole ring and R4 is an azetidin-4-yloxy group; or
(ix) the compounds 4-{4-(4-hydroxyphenyl)-3-[4-(2-piperidylethoxy)phenyl]isoxazol-5-yl}phenol; 4-methoxy-1-{4-(4-methoxyphenyl)-5-[4-(2-piperidylethoxy)phenyl]isoxazol-3-yl}benzene; and 4-methoxy-1-[4-(4-methoxyphenyl)-5-[4-prop-2-enyloxyphenyl)-isoxazol-3-yl]benzene.
1.1B A compound according to Embodiment 1.1 or Embodiment 1.1A which is other than a pyrrole substituted at each of the 1, 2 and 3 positions thereof with a substituted phenyl or pyridyl ring.
1.1C A compound according to any one of Embodiments 1.1 to 1.1B wherein the ring Z is other than a 1,2,3-trisubstituted pyrrole ring.
1.1D A compound according to any one of Embodiments 1.1 to 1.1B wherein the ring Z is other than an imidazole ring.
1.1E A compound according to any one of Embodiments 1.1 to 1.1D wherein the ring Z is other than a 1,2,4 triazole ring.
1.2 A compound according to any one of Embodiments 1.1 to Embodiment 1.1E wherein Z is a heteroaryl ring containing a nitrogen ring member and optionally one further heteroatom ring member selected from N and O.
1.3 A compound according to any one of Embodiments 1.1 to 1.1E wherein Z is selected from pyrrole, isoxazole, imidazole, pyrazole and triazole rings.
1.4 A compound according to Embodiment 1.3 wherein Z is selected from pyrrole, pyrazole and isoxazole rings.
1.5 A compound according to Embodiment 1.4 wherein Z is a pyrrole ring.
1.6 A compound according to Embodiment 1.5 wherein ring X is attached to the nitrogen atom of the pyrrole ring.
1.7 A compound according to Embodiment 1.4 wherein Z is a pyrazole ring.
1.8 A compound according Embodiment 1.7 wherein ring X is attached to a carbon atom of the pyrazole ring.
1.9 A compound according to Embodiment 1.7 or Embodiment 1.8 wherein ring Y is attached to a carbon atom of the pyrazole ring.
1.10 A compound according to Embodiment 1.7 or Embodiment 1.8 wherein ring Y is attached to a nitrogen atom of the pyrazole ring.
1.11 A compound according to any one of Embodiments 1.7 to 1.9 wherein Ar1 is attached to a carbon atom of the pyrazole ring.
1.12 A compound according to Embodiment 1.4 wherein Z is an isoxazole ring.
1.13 A compound according to Embodiment 1.12 wherein ring X is attached to the 4-position of the isoxazole ring.
1.14 A compound according to Embodiment 1.12 or Embodiment 1.13 wherein ring Y is attached to the 5-position of the isoxazole ring.
1.15 A compound according to any one of Embodiments 1.12 to 1.14 wherein Ar1 is attached to the 3-position of the isoxazole ring.
1.16 A compound according to any one of Embodiments 1.1 to 1.15 wherein the ring X is a benzene, pyridine or pyrimidine ring.
1.17 A compound according to Embodiment 1.16 wherein the ring X is a benzene ring or pyridine ring.
1.18 A compound according to Embodiment 1.17 wherein the ring X is a benzene ring.
1.19 A compound according to Embodiment 1.17 wherein the ring X is a pyridine ring.
1.20 A compound according to any one of Embodiments 1.16 to 1.17 and 1.19 wherein the pyridine ring is a 2-pyridine ring.
1.21 A compound according to any one of Embodiments 1.16 to 1.17 and 1.19 wherein the pyridine ring is a 3-pyridine ring.
1.22 A compound according to any one of Embodiments 1.16 to 1.17 and 1.19 wherein the pyridine ring is a 4-pyridine ring.
1.23 A compound according to any one of Embodiments 1.16 to 1.17 and 1.19 wherein the pyridine ring is a 2-pyridine or 3-pyridine ring.
1.150 A compound according to Embodiment 1.149 wherein Z, X, Y and Ar1 are as defined in any one of Embodiments 1.1A to 1.15.
1.151 A compound according to Embodiment 1.149 or Embodiment 1.150 wherein Z is other than a 1,2,3-trisubstituted pyrrole.
1.152 A compound according to any one of Embodiments 1.149 to 1.151 wherein Z is other than a 1,4,5-trisubstituted imidazole.
1.153 A compound according to any one of Embodiments 1.149 to 1.152 wherein Z is other than an imidazole ring.
1.154 A compound according to any one of Embodiments 1.149 to 1.153 wherein X is as defined in any one of Embodiments 1.18 to 1.23.
1.155 A compound according to any one of Embodiments 1.149 to 1.154 where R1 is as defined in any one of Embodiments 1.26 to 1.31, 1.34 to 1.38 or 1.40.
1.156 A compound according to any one of Embodiments 1.149 to 1.155 wherein m is as defined in any one of Embodiments 1.41 to 1.44.
1.157 A compound according to any one of Embodiments 1.149 to 1.155 wherein R4 is as defined in any one of Embodiments 1.45 to 1.50.
1.158 A compound according to any one of Embodiments 1.149 to 1.157 wherein R2 and R3 are as defined in any one of Embodiments 1.51 to 1.62.
1.159 A compound according to any one of Embodiments 1.149 to 1.158 wherein Ar1 is selected from a benzene or pyridine ring optionally substituted with one or more substituents R5.
1.160 A compound according to any one of Embodiments 1.149 to 1.159 wherein Ar1, R5, Ar2 and Hyd1 are as defined in any one of Embodiments 1.65 to 1.91.
1.161 A compound according to any one of Embodiments 1.149 to 1.160 wherein Y is as defined in any one of Embodiments 1.93 to 1.95.
1.162 A compound according to any one of Embodiments 1.149 to 1.161 wherein Q1 has the formula (CRpRq)r wherein r is 0, 1 or 2 and Rp and Rq are independently selected from hydrogen and methyl or Rp and Rq together with the carbon atom to which they are attached form a 3-membered saturated cyclic hydrocarbon ring, provided that the total number of carbons in Q1 does not exceed 3.
1.163 A compound according any one of Embodiments 1.149 to 1.162 wherein Q1 is absent or is selected from CH2, CH(CH3), C(CH3)2 and cyclopropane-1,1-diyl.
1.164 A compound according to Embodiment 1.163 wherein Q1 is absent or selected from CH2 and C(CH3)2.
1.165 A compound according any Embodiment 1.164 wherein Q1 is absent.
1.166 A compound according to Embodiment 1.164 wherein Q1 is CH2.
1.167 A compound according to any one of Embodiments 1.149 to 1.166 wherein Ra is selected from O; C(O); C(O)O; CONRc; N(Rc)CO; N(Rc)CONRc and NRc.
1.168 A compound according to Embodiment 1.167 wherein Ra is O;
1.169 A compound according to Embodiment 1.167 wherein Ra is CONRc.
1.170 A compound according to Embodiment 1.167 wherein Ra is N(Rc)CO.
1.171 A compound according to Embodiment 1.167 wherein Ra is NRc.
1.172 A compound according to Embodiment 1.167 wherein Ra is C(O).
1.173 A compound according to Embodiment 1.167 wherein Ra is C(O)O.
1.174 A compound according to Embodiment 1.173 wherein Rb is other than hydrogen.
1.175 A compound according to any one of Embodiments 1.149 to 1.174 wherein Rb, Rc and Cyc1 are as defined in any one of Embodiments 1.111 to 1.139.
1.176 A compound according to any one of Embodiment 1.149 to 1.162 wherein:
1.177 A compound according to any one of Embodiments 1.149 to 1.175 wherein R6 is selected from groups A to AM in Table 1 above.
1.178 A compound according to any one of Embodiments 1.149 to 1.175 wherein R6 is selected from the groups A to M, O to Q, S, U, X, Z and AA to AJ in Table 1 above.
1.179 A compound according to Embodiment 1.178 wherein R6 is selected from groups A and Q.
1.180 A compound according to Embodiment 1.178 wherein R6 is a group A.
1.180A A compound of formula (4):
or a pharmaceutically acceptable salt or tautomer thereof, wherein
Za is a 5-membered heteroaryl ring containing one or two nitrogen ring members and one further heteroatom ring member selected from N and O;
ring X is 6 membered carbocyclic or heterocyclic aromatic ring containing 0, 1 or 2 nitrogen heteroatom ring members;
ring Y is a 6 membered carbocyclic ring or a 5- or 6-membered heterocyclic aromatic ring containing 1 or 2 heteroatom ring members selected from N, O and S;
Ar1 is a monocyclic 5- or 6-membered aromatic ring, optionally containing 0, 1 or 2 heteroatom ring members selected from N, O and S and being optionally substituted with one or more substituents R5;
m is 0, 1 or 2;
n is 0, 1 or 2;
one of p and q is 0 and the other of p and q is 0 or 1;
R1 is selected from:
provided that when a substituent R4 is present at the meta or para-position of the ring X, and/or when an atom or group other than hydrogen is present at the ortho-position of the ring Y, then R1 is additionally selected from hydrogen and fluorine;
Hyd1 and Hyd2 are the same or different and are C1-4 hydrocarbon groups;
R2 is selected from hydrogen and a C1-4 hydrocarbon group;
R3 is selected from hydrogen and a C1-4 hydrocarbon group;
R4 is selected from:
R5 is selected from halogen; O—Ar2; cyano, hydroxy; amino; Hyd1-SO2— and a non-aromatic C1-3 hydrocarbon group where 0, 1 or 2 but not all of the carbons in the hydrocarbon group are optionally replaced with a heteroatom selected from N, O and S and where the hydrocarbon group is optionally substituted with one or more fluorine atoms;
Ar2 is a phenyl, pyridyl or pyridone group optionally substituted with 1 or 2 substituents selected from halogen; cyano and a C1-4 hydrocarbon group optionally substituted with one or more fluorine atoms;
R6 is selected from halogen, cyano, nitro and a group Q1-Ra—Rb;
Q1 is absent or is a C1-6 saturated hydrocarbon linker;
Ra is absent or is selected from O; C(O); C(O)O; CONRc; N(Rc)CO; N(Rc)CONRc, NRc; S; SO; SO2; SO2NRc; and NRcSO2;
Rb is selected from:
Cyc1 is a non-aromatic 4-7 membered carbocyclic or heterocyclic ring group containing 0, 1 or 2 heteroatom ring members selected from N, O and S and being optionally substituted with one or more substituents selected from hydroxyl; amino; (Hyd2)NH; (Hyd2)2N; and a C1-5 hydrocarbon group where 0, 1 or 2 of the carbons in the hydrocarbon group are replaced with a heteroatom selected from N, O and S, the hydrocarbon group being optionally substituted with one or more fluorine atoms or by a 5- or 6-membered heteroaryl group containing 1 or 2 heteroatom ring members selected from N and O;
Rc is selected from hydrogen and a C1-4 non-aromatic hydrocarbon group; and
R7 is selected from R4.
1.180B A compound according to Embodiment 1.180A wherein one of p and q is 0 and the other of p and q is 1.
1.180C A compound according to Embodiment 1.180B wherein Za is a pyrazole ring.
1.180D A compound according to Embodiment 1.180A wherein both p and q are 0.
1.180E A compound according to Embodiment 1.180D wherein Za is an isoxazole.
1.180F A compound according to any one of Embodiments 1.180A to 1.180E wherein Ar1, R1, R2, R3, R4, R6, R7, m, n, the ring X and the ring Y are as defined in any one of Embodiments 1.1, 1.1A to 1.1E and 1.7 to 1.146 and 1.148 to 1.180.
1.181 A compound which is a title compound of any one of Examples 1 to 107 herein.
1.182 A compound as defined in any one of Embodiments 1.1 to 1.181 in the form of a salt.
1.183 A compound according to Embodiment 1.182 wherein the salt is an acid addition salt.
Unless the context indicates otherwise, references to formula (1) in all sections of this document (including the uses, methods and other aspects of the invention) include references to all other sub-formulae (e.g. formulae (2) and (3)), sub-groups, preferences, embodiments and examples as defined herein.
Salts
The compounds of the invention as defined in Embodiments 1.1 to 1.181 may be presented in the form of salts.
The salts referred to above are typically acid addition salts.
The salts can be synthesized from the parent compound by conventional chemical methods such as methods described in Pharmaceutical Salts: Properties, Selection, and Use, P. Heinrich Stahl (Editor), Camille G. Wermuth (Editor), ISBN: 3-90639-026-8, Hardcover, 388 pages, August 2002. Generally, such salts can be prepared by reacting the free base form of the compound with the acid in water or in an organic solvent, or in a mixture of the two; generally, nonaqueous media such as ether, ethyl acetate, ethanol, isopropanol, or acetonitrile are used.
Acid addition salts (as defined in Embodiment 1.183) may be formed with a wide variety of acids, both inorganic and organic. Examples of acid addition salts include salts formed with an acid selected from the group consisting of acetic, 2,2-dichloroacetic, adipic, alginic, ascorbic (e.g. L-ascorbic), L-aspartic, benzenesulphonic, benzoic, 4-acetamidobenzoic, butanoic, (+) camphoric, camphor-sulphonic, (+)-(1S)-camphor-10-sulphonic, capric, caproic, caprylic, cinnamic, citric, cyclamic, dodecylsulphuric, ethane-1,2-disulphonic, ethanesulphonic, 2-hydroxyethanesulphonic, formic, fumaric, galactaric, gentisic, glucoheptonic, D-gluconic, glucuronic (e.g. D-glucuronic), glutamic (e.g. L-glutamic), α-oxoglutaric, glycolic, hippuric, hydrobromic, hydrochloric, hydriodic, isethionic, (+)-L-lactic, (±)-DL-lactic, lactobionic, maleic, malic, (−)-L-malic, malonic, (±)-DL-mandelic, methanesulphonic, naphthalene-2-sulphonic, naphthalene-1,5-disulphonic, 1-hydroxy-2-naphthoic, nicotinic, nitric, oleic, orotic, oxalic, palmitic, pamoic, phosphoric, propionic, L-pyroglutamic, salicylic, 4-amino-salicylic, sebacic, stearic, succinic, sulphuric, tannic, (+)-L-tartaric, thiocyanic, p-toluenesulphonic, undecylenic and valeric acids, as well as acylated amino acids and cation exchange resins.
The salt forms of the compounds of the invention are typically pharmaceutically acceptable salts, and examples of pharmaceutically acceptable salts are discussed in Berge et al., 1977, “Pharmaceutically Acceptable Salts,” J. Pharm. Sci., Vol. 66, pp. 1-19. However, salts that are not pharmaceutically acceptable may also be prepared as intermediate forms which may then be converted into pharmaceutically acceptable salts. Such non-pharmaceutically acceptable salts forms, which may be useful, for example, in the purification or separation of the compounds of the invention, also form part of the invention.
Geometric Isomers and Tautomers
The compounds of the invention may exist in a number of different geometric isomeric, and tautomeric forms and references to the compounds as defined in Embodiments 1.1 to 1.183 include all such forms. For the avoidance of doubt, where a compound can exist in one of several geometric isomeric or tautomeric forms and only one is specifically described or shown, all others are nevertheless embraced by formula (1) or subgroups, subsets, preferences and examples thereof.
Optical Isomers
Where compounds of the formula contain one or more chiral centres, and can exist in the form of two or more optical isomers, references to the compounds include all optical isomeric forms thereof (e.g. enantiomers, epimers and diastereoisomers), either as individual optical isomers, or mixtures (e.g. racemic mixtures) or two or more optical isomers, unless the context requires otherwise.
The optical isomers may be characterised and identified by their optical activity (i.e. as + and − isomers, or d and/isomers) or they may be characterised in terms of their absolute stereochemistry using the “R and S” nomenclature developed by Cahn, Ingold and Prelog, see Advanced Organic Chemistry by Jerry March, 4th Edition, John Wiley & Sons, New York, 1992, pages 109-114, and see also Cahn, Ingold & Prelog, Angew. Chem. Int. Ed. Engl., 1966, 5, 385-415.
Optical isomers can be separated by a number of techniques including chiral chromatography (chromatography on a chiral support) and such techniques are well known to the person skilled in the art.
As an alternative to chiral chromatography, optical isomers can be separated by forming diastereoisomeric salts with chiral acids such as (+)-tartaric acid, (−)-pyroglutamic acid, (−)-di-toluoyl-L-tartaric acid, (+)-mandelic acid, (−)-malic acid, and (−)-camphorsulphonic, separating the diastereoisomers by preferential crystallisation, and then dissociating the salts to give the individual enantiomer of the free base.
Where compounds of the invention exist as two or more optical isomeric forms, one enantiomer in a pair of enantiomers may exhibit advantages over the other enantiomer, for example, in terms of biological activity. Thus, in certain circumstances, it may be desirable to use as a therapeutic agent only one of a pair of enantiomers, or only one of a plurality of diastereoisomers. Accordingly, the invention provides compositions containing a compound having one or more chiral centres, wherein at least 55% (e.g. at least 60%, 65%, 70%, 75%, 80%, 85%, 90% or 95%) of the compound of the formula (1) is present as a single optical isomer (e.g. enantiomer or diastereoisomer). In one general embodiment, 99% or more (e.g. substantially all) of the total amount of the compound of the formula (1) may be present as a single optical isomer (e.g. enantiomer or diastereoisomer).
Isotopes
The compounds of the invention as defined in any one of Embodiments 1.1 to 1.183 may contain one or more isotopic substitutions, and a reference to a particular element includes within its scope all isotopes of the element. For example, a reference to hydrogen includes within its scope 1H, 2H (D), and 3H (T). Similarly, references to carbon and oxygen include within their scope respectively 12C, 13C and 14C and 16O and 18O.
The isotopes may be radioactive or non-radioactive. In one embodiment of the invention, the compounds contain no radioactive isotopes. Such compounds are preferred for therapeutic use. In another embodiment, however, the compound may contain one or more radioisotopes. Compounds containing such radioisotopes may be useful in a diagnostic context.
Solvates
Compounds as defined in any one of Embodiments 1.1 to 1.183 may form solvates.
Preferred solvates are solvates formed by the incorporation into the solid state structure (e.g. crystal structure) of the compounds of the invention of molecules of a non-toxic pharmaceutically acceptable solvent (referred to below as the solvating solvent).
Examples of such solvents include water, alcohols (such as ethanol, isopropanol and butanol) and dimethylsulphoxide. Solvates can be prepared by recrystallising the compounds of the invention with a solvent or mixture of solvents containing the solvating solvent. Whether or not a solvate has been formed in any given instance can be determined by subjecting crystals of the compound to analysis using well known and standard techniques such as thermogravimetric analysis (TGE), differential scanning calorimetry (DSC) and X-ray crystallography.
The solvates can be stoichiometric or non-stoichiometric solvates.
Particularly preferred solvates are hydrates, and examples of hydrates include hemihydrates, monohydrates and dihydrates.
For a more detailed discussion of solvates and the methods used to make and characterise them, see Bryn et al., Solid-State Chemistry of Drugs, Second Edition, published by SSCI, Inc of West Lafayette, Ind., USA, 1999, ISBN 0-967-06710-3.
Prodrugs
The compounds as defined in any one of Embodiments 1.1 to 1.183 may be presented in the form of a pro-drug.
By “prodrugs” is meant for example any compound that is converted in vivo into a biologically active compound of the formula (1), as defined in any one of Embodiments 1.1 to 1.183.
For example, some prodrugs are esters of the active compound (e.g., a physiologically acceptable metabolically labile ester). During metabolism, the ester group (—C(═O)OR) is cleaved to yield the active drug. Such esters may be formed by esterification, for example, of any hydroxyl groups present in the parent compound with, where appropriate, prior protection of any other reactive groups present in the parent compound, followed by deprotection if required.
Also, some prodrugs are activated enzymatically to yield the active compound, or a compound which, upon further chemical reaction, yields the active compound (for example, as in ADEPT, GDEPT, LIDEPT, etc.). For example, the prodrug may be a sugar derivative or other glycoside conjugate, or may be an amino acid ester derivative.
Methods for the Preparation of Compounds of the Invention
Compounds of the formula (1) and the various sub-groups therefore can be prepared in accordance with synthetic methods well known to the skilled person. Unless stated otherwise, R1-R7, Ar1, X, Y and Z are as hereinbefore defined. In this section, unless indicated to the contrary, references to formula (1) include formulae (2), (3) and (4).
Compounds of the formula (1) wherein Z is a pyrrole can be prepared by reacting a 1,4-dicarbonyl compound of formula (10) with an aminoaryl compound of formula (11) as shown in Scheme 1.
The starting materials for the synthetic route shown in Scheme 1 is the 1-aryl-3-bromopropanone (12) with arylpropanone (13), which can both be obtained commercially.
The 1-aryl-2-bromoethanone (12), is reacted with arylpropanone (13) to give the 1,4-dicarbonyl compound (10). The reaction is preferably carried out in the presence of a zinc (II) salt (for example, zinc chloride) in a non-polar, aprotic solvent (for example, benzene or toluene). Preferably a tertiary alcohol (for example, t-butanol) and a tertiary amine (for example, triethylamine) are also added. The reaction may be carried out at room temperature, for example over a period of 12 to 48 hours.
The 1,4-dicarbonyl compound (10) may then be reacted with aminoarene (11) to form the trisubstituted pyrroles of the present invention (1). The reaction may be carried out in a non-polar, aprotic solvent (for example dioxane). The reaction mixture may be subject to heating (for example between 150 and 170° C.) and/or microwave irradiation. The reaction may be carried out for between 1 and 12 hours, for example between 1 and 6 hours. A strong acid (e.g. p-toluenesulphonic acid) may also be added as a catalyst.
Alternatively, compounds of formula (10) where R2 and R3 are both hydrogen can be prepared by the synthetic route as shown in Scheme 2.
Starting aldehyde (11a) may be prepared from the corresponding acid by reduction with a reducing agent (for example NaBH4), followed by oxidation with a suitable oxidising agent. One such example of an oxidising agent to prepare the aldehyde without further oxidation to the carboxylic acid is Dess-Martin periodinane. Starting amine (11b) may be prepared via a Mannich reaction with dimethylamine hydrochloride and formaldehyde in a polar, protic solvent (for example ethanol) in the presence of an acid catalyst.
Compounds of formula (10) can then be prepared by reacting compound (11a) and (11b) in a polar, aprotic solvent (for example, 1,2-dimethoxyethane) with a suitable catalyst. One such class of suitable catalysts are thiazolium salts (for example, 3-ethyl-5-(2-hydroxyethyl)-4-methylthiazoliumbromide). The reaction is typically carried out at elevated temperatures (for example between 800C and 1200C) for between 1 and 24 hours, even more preferably between 2 and 12 hours.
Once formed, one compound of the formula (1) may be transformed into another compound of the formula (1) using standard chemistry procedures well known in the art. For examples of functional group interconversions, see for example, March's Advanced Organic Chemistry, Michael B. Smith & Jerry March, 6th Edition, Wiley-Blackwell (ISBN: 0-471-72091-7), 2007 and Organic Syntheses, Volumes 1-9, John Wiley, edited by Jeremiah P. Freeman (ISBN: 0-471-12429), 1996.
Compounds of the formula (1) where Y is substituted with a substituent R6 wherein R6 is an amide group of the formula C(O)NHR3, wherein R3 is an optionally substituted C1-8 hydrocarbon group can be prepared by according to the synthetic route as shown in Scheme 3.
In Scheme 3, Y represents ring Y as defined herein.
A compound of the formula (14) can be prepared in accordance with the synthetic route as shown in Scheme 1 above, wherein R11 is a C1-8 hydrocarbon group or another carboxylic acid protecting group. Ester (14) can be hydrolysed to give carboxylic acid (15). This is preferably carried out in a mixture of a non-polar, aprotic solvent (for example, tetrahydrofuran) and a polar, protic solvent (for example, water). One such suitable solvent system is a 1:1 mixture of tetrahydrofuran and water. A strong, water-soluble base (for example, lithium hydroxide) is added and the reaction mixture is stirred at room temperature for an extended period, for example between 6 and 48 hours, more usually between 12 and 48 hours.
The acid compound (15) may then be reacted with a corresponding amine (H2N—R8) under amide-forming conditions, for example in the presence of a reagent of the type commonly used in the formation of amide bonds, to afford a compound of the formula (1) wherein R6 is an amide. Examples of such reagents include carbodiimide-based coupling agents such as 1,3-dicyclohexylcarbo-diimide (DCC) (Sheehan et al, J. Amer. Chem Soc. 1955, 77, 1067) and 1-ethyl-3-(3′-dimethylaminopropyl)-carbodiimide (referred to herein either as EDC or EDCI) (Sheehan et al, J. Org. Chem., 1961, 26, 2525), which are typically used in combination with 1-hydroxy-7-azabenzotriazole (HOAt) (L. A. Carpino, J. Amer. Chem. Soc., 1993, 115, 4397) or 1-hydroxybenzotriazole (HOBt) (Konig et al, Chem. Ber., 103, 708, 2024-2034). Further examples of such reagents are uronium-based coupling agents such as O-(7-azabenzotriazol-1-yl)-N,N,N‘N’-tetramethyluronium hexafluorophosphate (HATU). One preferred amide coupling agent is HATU.
The coupling reaction is typically carried out in a non-aqueous, non-protic solvent such as dimethylformamide at room temperature in the presence of a non-interfering base, for example a tertiary amine such as triethylamine or N,N-diisopropylethylamine.
Compounds of formula (15) may alternatively be prepared from the hydrolysis of the corresponding nitrile, using appropriate hydrolysis conditions. Preferably the hydrolysis is carried out with a strong base, for example an alkali metal hydroxide (for example, sodium hydroxide) in a polar protic solvent or a mixture of polar protic solvents. One such example of a suitable solvent system in a mixture of methanol and water. The reaction is preferably carried out at elevated temperature for between 12 and 24 hours.
Compounds of the formula (1) where Y is substituted with a substituent R6 wherein R6 is an amine group having the formula NHR9 can be prepared by according to the synthetic route as shown in Scheme 4.
In Scheme 4, Y represents ring Y as defined herein.
A compound of formula (16) can be prepared according to the synthetic route as shown in Scheme 1 above. Compound (16) can then be reduced to compound (17) using a suitable reducing agent (for example, sodium borohydride) and optionally with catalytic quantities of a copper (II) salt (for example, copper (II) acetate). The reaction is preferably carried out in an anhydrous, polar, aprotic solvent (for example, methanol).
Compound (17) can then be reacted with a compound of the formula LG-R9, wherein LG is a suitable leaving group (for example, halogen, more preferably chlorine) and R9 is an optionally substituted non-aromatic C1-8 hydrocarbon group. The amine compound (17) is first treated with a suitable base (for example, sodium hydride) in a polar, aprotic solvent (for example, dimethylformamide), typically at room temperature and is then reacted with compound LG-R9, typically at an elevated temperature (for example, between 60° C. and 100° C.).
Alternatively, compounds of formula (1) where R6 is an amide in which the nitrogen atom of the amide is bonded to ring Y can be prepared from compounds of formula (17) in an analogous method to the method shown in Scheme 4 and carboxylic acids, or activated derivatives (such as acyl chlorides or acid anhydrides).
Alternatively, the compounds of formula (1) wherein R6 is an amide of the formula NHCOR10 where R10 is an optionally substituted C1-8 hydrocarbon group, can be prepared from intermediate (17), under amide-forming conditions, for example in the presence of a reagent of the type commonly used in the formation of amide bonds, according to Scheme 5.
In Scheme 5, Y represents ring Y as defined herein.
Examples of such reagents include carbodiimide-based coupling agents such as 1,3-dicyclohexylcarbo-diimide (DCC) (Sheehan et al, J. Amer. Chem Soc. 1955, 77, 1067) and 1-ethyl-3-(3′-dimethylaminopropyl)-carbodiimide (referred to herein either as EDC or EDCI) (Sheehan et al, J. Org. Chem., 1961, 26, 2525), which are typically used in combination with 1-hydroxy-7-azabenzotriazole (HOAt) (L. A. Carpino, J. Amer. Chem. Soc., 1993, 115, 4397) or 1-hydroxybenzotriazole (HOBt) (Konig et al, Chem. Ber., 103, 708, 2024-2034). Further examples of such reagents are uronium-based coupling agents such as O-(7-azabenzotriazol-1-yl)-N,N,N‘N’-tetramethyluronium hexafluorophosphate (HATU). One preferred amide coupling agent is HATU.
The coupling reaction is typically carried out in a non-aqueous, non-protic solvent such as dimethylformamide at room temperature in the presence of a non-interfering base, for example a tertiary amine such as triethylamine or N,N-diisopropylethylamine.
Compounds of the formula (1) where Y is substituted with a substituent R6 wherein R6 is an ether group having the formula OR12 where R12 is an optionally substituted C1-8 hydrocarbon group can be prepared by according to the synthetic route as shown in Scheme 6.
In Scheme 6, Y represents ring Y as defined herein.
A compound of formula (19) can be prepared according to the synthetic route as shown in Scheme 1 above. Compound (19) can then be reacted with a compound of the formula LG-R12, wherein LG is a suitable leaving group (for example, halogen, more preferably chlorine) and R7 is an optionally substituted non-aromatic C1-8 hydrocarbon group. The alcohol compound (19) is first deprotonated with a suitable base (for example, sodium hydride) in a polar, aprotic solvent (for example, dimethylformamide). This reaction may be carried out at room temperature. The reaction mixture is then treated with compound of the formula LG-R12. The second step of this reaction may occur at elevated temperatures, typically between 800C and 100° C.
Compounds of formula (1) wherein R6 is Q1-Ra—Rb and Q1 is a methylene group can be prepared according to Scheme 7.
In Scheme 7, Y represents ring Y as defined herein.
Compound (15) (obtainable as described in Scheme 3 above) is treated with a reducing agent (for example sodium borohydride) in an polar aprotic solvent, such as tetrahydrofuran, to afford the primary alcohol (20). Alcohol (20) can then be reacted in the manner described above in Scheme 6 to provide further compounds of formula (1) wherein R6 is an ether.
Alternatively, compound (20) may undergo other standard functional group interconversions to yield further compounds of formula (1), for example via oxidation to an aldehyde and reductive amination to form an amine. Amines produced via this method can be further reacted with carboxylic acids or acid derivatives to yield amide compounds of formula (1) using the method described above in Scheme 5.
Compounds of the formula (1) wherein Z is a 1,4,5-trisubstituted pyrazole can be prepared by reacting an aryl hydrazine (21) with the α,β-unsaturated carbonyl compound (22) as shown in Scheme 8.
In Scheme 8, X and Y represent rings X and Y respectively as defined herein.
The aryl hydrazine (21) and α,β-unsaturated carbonyl compound (22) are dissolved in a suitable polar, protic solvent system (e.g. 1:1 water:methanol) with a suitable base (e.g. sodium carbonate). The mixture is typically stirred at or about room temperature (e.g. for about 15 minutes) before a weak acid, such as acetic acid, is added. The resulting mixture is then heated (e.g. between 100° C. and 140° C., for an extended period of time, (for example between 6 and 12 hours), for a period of time (e.g. 8 hours) sufficient to afford a compound of formula (1) wherein Z is a 1,4,5-trisubstituted pyrazole.
The starting α,β-unsaturated carbonyl compound (22) of Scheme 8 can be prepared from the corresponding ketone (23) and N,N-dimethylformamide dimethyl acetal. A solution of N,N-dimethylformamide dimethyl acetal in a polar aprotic solvent such as DMF, is added to a solution of ketone (23). The mixture is typically heated, for example to a temperature between 70° C. and 110° C. (e.g. approximately 90° C.) to afford compound (22). Compound (23) may be obtained through a Grignard reaction between Ar1CH2CHO and Br—X followed by oxidation of the resulting alcohol with a suitable oxidising agent (for example, Dess-Martin periodinane) in a solvent such as DCM to afford ketone (23).
Alternatively, when alternative isomers of formula (1) wherein Z is a 3,4,5-trisubstituted pyrazole, are required, these can be prepared as described in Scheme 10 below.
In Scheme 10, X and Y represent rings X and Y respectively as defined herein.
Alkenyl bromide (25) is reacted with diazo compound (26) in a 1,3-dipolar cycloaddition reaction by mixing the two compounds with a strong base (e.g. sodium hydroxide) and heating (e.g. to a temperature of approximately 70° C.) to afford bromo-pyrazole (27).
The bromo-pyrazole (27) is then reacted with a boronic acid having formula X—B(OH)2 (wherein X is a ring as defined herein) in a polar solvent such as dioxane in the presence of a palladium (0) catalyst, such as bis(tri-tert-butylphosphine)palladium (0), and suitable base (such as caesium or potassium carbonate or phosphate) under Suzuki reaction conditions to give the compound of formula (1) wherein Z is a pyrazole or a protected derivative thereof. The bromo-pyrazole (27) may be in a protected form. For example, in the NH group on the pyrazole, a protecting group such as a Boc (tert-butoxycarbonyl) group may be attached to the nitrogen atom, replacing the hydrogen atom. After the reaction between the boronic acid and the pyrazole (27), a deprotection step may be required in order to give the compound of formula (1). In the case of a Boc protecting group, this can be removed by treatment with an acid such as hydrochloric acid.
Boronates and boronic acids are widely available commercially or can be prepared for example as described in the review article by N. Miyaura and A. Suzuki, Chem. Rev. 1995, 95, 2457. Thus, boronates can be prepared by reacting the corresponding bromo-compound with an alkyl lithium such as butyl lithium and then reacting with a borate ester. The resulting boronate ester derivative can, if desired, be hydrolysed to give the corresponding boronic acid.
Starting material (25) can be prepared by treating the aryl aldehyde with carbon tetrabromide and triphenylphosphine in a solvent such as DCM at a reduced temperature (e.g. approximately 0° C.). Starting material (26) can be prepared from the corresponding aryl aldehyde by treating with p-toluenesulfonyl hydrazide in a polar protic solvent such as methanol and heating (e.g. to approximately 60° C.).
Compounds of formula (1) wherein Z is an isoxazole may be prepared according to the synthetic scheme in Scheme 11.
In Scheme 11, X and Y represent rings X and Y respectively as defined herein.
Intermediate (30) can be prepared by reacting alkyne (28) with oxime (29) by mixing in a polar, aprotic solvent (such as diethyl ether) with a base (such as triethylamine), for example at a temperature around room temperature to afford isoxazole (30). Isoxazole (30) can then be brominated, with a suitable brominating agent, such as N-bromosuccinimide as a bromine source, to afford the bromoisoxazole (31). The reaction typically takes place in an acidic solution (e.g. acetic acid) at elevated temperatures (for example between 90° C. and 120° C.).
The bromo-isoxazole (31) is then reacted with a boronic acid having formula X—B(OH)2 (wherein X is a ring as defined herein) in a polar solvent such as dioxane in the presence of a palladium (0) catalyst, such as bis(tri-tert-butylphosphine)palladium (0), and a base (e.g. caesium or potassium carbonate or phosphate) under Suzuki reaction conditions to give the compound of formula (1) wherein Z is a isoxazole or a protected derivative thereof. The bromo-isoxazole (31) may be in a protected form. For example, in a NH group on groups Ar, or Y, a protecting group such as a Boc (tert-butoxycarbonyl) group may be attached to the nitrogen atom, replacing the hydrogen atom. After the reaction between the boronic acid and the isoxazole (31), a deprotection step may be required in order to give the compound of formula (1). In the case of a Boc protecting group, this can be removed by treatment with an acid such as hydrochloric acid.
Boronates and boronic acids are widely available commercially or can be prepared for example as described in the review article by N. Miyaura and A. Suzuki, Chem. Rev. 1995, 95, 2457. Thus, boronates can be prepared by reacting the corresponding bromo-compound with an alkyl lithium such as butyl lithium and then reacting with a borate ester. The resulting boronate ester derivative can, if desired, be hydrolysed to give the corresponding boronic acid.
Starting material (29) can be prepared from the corresponding aryl aldehyde via a two-step process. The first step consists of treating the aldehyde with NH2OH and a strong base (such as sodium hydroxide) in a polar, protic solvent system (such as 1:1 ethanol:water) to afford the aryl oxime. This can then the chlorinated by mixing with N-chlorosuccinimide in dimethylformamide and stirring for 18 hours to afford starting material (29).
The synthesis of the compounds of formula (1) has been illustrated above with reaction schemes for preparing pyrroles, isoxazoles and pyrazoles. It will readily be appreciated however that analogous methods may be used to prepare compounds of formula (1) containing other five-membered heteroaryl rings.
Protecting Groups
In many of the reactions described above, it may be necessary to protect one or more groups to prevent reaction from taking place at an undesirable location on the molecule. Examples of protecting groups, and methods of protecting and deprotecting functional groups, can be found in Protective Groups in Organic Synthesis (T. Green and P. Wuts; 3rd Edition; John Wiley and Sons, 1999).
A hydroxy group may be protected, for example, as an ether (—OR) or an ester (—OC(═O)R), for example, as: a t-butyl ether; a tetrahydropyranyl (THP) ether; a benzyl, benzhydryl (diphenylmethyl), or trityl (triphenylmethyl) ether; a trimethylsilyl or t-butyldimethylsilyl ether; or an acetyl ester (—OC(═O)CH3, —OAc).
An aldehyde or ketone group may be protected, for example, as an acetal (R—CH(OR)2) or ketal (R2C(OR)2), respectively, in which the carbonyl group (>C═O) is converted to a diether (>C(OR)2), by reaction with, for example, a primary alcohol. The aldehyde or ketone group is readily regenerated by hydrolysis using a large excess of water in the presence of acid.
An amine group may be protected, for example, as an amide (—NRCO—R) or a urethane (—NRCO—OR), for example, as: a methyl amide (—NHCO—CH3); a benzyloxy amide (—NHCO—OCH2C6H5, —NH-Cbz or NH—Z); as a t-butoxy amide (—NHCO—OC(CH3)3, —NH-Boc); a 2-biphenyl-2-propoxy amide (—NHCO—OC(CH3)2C6H4C6H5, —NH-Bpoc), as a 9-fluorenylmethoxy amide (—NH-Fmoc), as a 6-nitroveratryloxy amide (—NH—Nvoc), as a 2-trimethylsilylethyloxy amide (—NH-Teoc), as a 2,2,2-trichloroethyloxy amide (—NH-Troc), as an allyloxy amide (—NH-Alloc), or as a 2(-phenylsulphonyl)ethyloxy amide (—NH-Psec).
For example, in Scheme 1 above, when the moiety R3 in the amine H2N—Y—R3 contains a second amino group, such as a cyclic amino group (e.g. a piperidine or pyrrolidine group), the second amino group can be protected by means of a protecting group as hereinbefore defined, one preferred group being the tert-butyloxycarbonyl (Boc) group.
Where no subsequent modification of the second amino group is required, the protecting group can be carried through the reaction sequence to give an N-protected form of a compound of the formula (1) which can then be de-protected by standard methods (e.g. treatment with acid in the case of the Boc group) to give the compound of formula (1).
Other protecting groups for amines, such as cyclic amines and heterocyclic N—H groups, include toluenesulphonyl (tosyl) and methanesulphonyl (mesyl) groups, benzyl groups such as a para-methoxybenzyl (PMB) group and tetrahydropyranyl (THP) groups.
A carboxylic acid group may be protected as an ester for example, as: an C1-7 alkyl ester (e.g., a methyl ester; a t-butyl ester); a C1-7 haloalkyl ester (e.g., a C1-7 trihaloalkyl ester); a triC1-7 alkylsilyl-C1-7alkyl ester; or a C5-20 aryl-C1-7 alkyl ester (e.g., a benzyl ester; a nitrobenzyl ester); or as an amide, for example, as a methyl amide. A thiol group may be protected, for example, as a thioether (—SR), for example, as: a benzyl thioether; an acetamidomethyl ether (—S—CH2NHC(═O)CH3).
Isolation and Purification of the Compounds of the Invention
The compounds of the invention can be isolated and purified according to standard techniques well known to the person skilled in the art. One technique of particular usefulness in purifying the compounds is preparative liquid chromatography using mass spectrometry as a means of detecting the purified compounds emerging from the chromatography column.
Preparative LC-MS is a standard and effective method used for the purification of small organic molecules such as the compounds described herein. The methods for the liquid chromatography (LC) and mass spectrometry (MS) can be varied to provide better separation of the crude materials and improved detection of the samples by MS. Optimisation of the preparative gradient LC method will involve varying columns, volatile eluents and modifiers, and gradients. Methods are well known in the art for optimising preparative LC-MS methods and then using them to purify compounds. Such methods are described in Rosentreter U, Huber U.; Optimal fraction collecting in preparative LC/MS; J Comb Chem.; 2004; 6(2), 159-64 and Leister W, Strauss K, Wisnoski D, Zhao Z, Lindsley C., Development of a custom high-throughput preparative liquid chromatography/mass spectrometer platform for the preparative purification and analytical analysis of compound libraries; J Comb Chem.; 2003; 5(3); 322-9.
An example of such a system for purifying compounds via preparative LC-MS is described below in the Examples section of this application (under the heading “Mass Directed Purification LC-MS System”). However, it will be appreciated that alternative systems and methods to those described could be used. In particular, normal phase preparative LC based methods might be used in place of the reverse phase methods described here. Most preparative LC-MS systems utilise reverse phase LC and volatile acidic modifiers, since the approach is very effective for the purification of small molecules and because the eluents are compatible with positive ion electrospray mass spectrometry. Employing other chromatographic solutions e.g. normal phase LC, alternatively buffered mobile phase, basic modifiers etc as outlined in the analytical methods described below could alternatively be used to purify the compounds.
Biological Properties and Therapeutic Uses
It is believed that compounds of the invention may be effective in exploiting weaknesses in cellular pathways as a result of constitutively activating KRAS mutants and therefore the compounds of the invention may be useful for the treatment of diseases and conditions mediated by modulation of KRAS.
Mutation of KRAS, resulting from a single nucleotide substitution, has been associated with various forms of cancer. In particular, KRAS mutations are found at high rates in leukemias, colon cancer, pancreatic cancer and lung cancer.
A primary screen for anticancer activity, which makes use of a cancer cell line (HCT116) containing mutant KRAS, is described in the Examples below.
In addition, it is believed that compounds of the invention may be useful in treating cancers characterised by p53 deficiency or mutation in the TP53 gene. PLK1 is believed to inhibit p53 in cancer cells. Therefore, upon treatment with PLK1 inhibitors, p53 in tumour cells should be activated and hence should induce apoptosis.
The activity of the compounds against KRAS mutant and p53 deficient cancers is believed to arise, at least in part, through inhibition of PLK1 kinase and, in particular, the C-terminal polo box domain (PBD) of PLK1 kinase. KRAS is known to be dependent on interaction with PLK1. Compounds of the invention that only inhibit the PBD domain and not the N-terminal catalytic domain of PLK1 are advantageous in that they are selective for PLK1-PBD over other structurally and functionally similar kinases, against which they show negligible inhibitory activity (see Example E below).
Compounds of the invention induce mitotic arrest with non-congressed chromosomes, a property which is believed to arise from the PLK1-PBD inhibiting activity of the compounds (see Example B below).
A further advantage of inhibiting the PBD domain rather than the catalytic domain is that this may result in a reduced tendency to induce drug resistance compared to PLK1 inhibitors that inhibit the catalytic domain (see Example I below).
The activity of compounds of the invention as inhibitors of the PBD domain of PLK1 kinase has been demonstrated using the fluorescence polarization (FP) assay described in Narvaez et al., Cell Chemical Biology, 24, 1017-1028, 2017, see page 1018 and page 1026 (Method Details).
Compounds of the invention have good oral bioavailability (see Example F below) and have good brain exposure when administered orally (see Example G below). Accordingly, the compounds of the invention should be useful in treating brain cancers such as gliomas and glioblastomas.
Examples of cancers (and their benign counterparts) which may be treated include, but are not limited to tumours of epithelial origin (adenomas and carcinomas of various types including adenocarcinomas, squamous carcinomas, transitional cell carcinomas and other carcinomas) such as carcinomas of the bladder and urinary tract, breast, gastrointestinal tract (including the esophagus, stomach (gastric), small intestine, colon, rectum and anus), liver (hepatocellular carcinoma), gall bladder and biliary system, exocrine pancreas, kidney, lung (for example adenocarcinomas, small cell lung carcinomas, non-small cell lung carcinomas, bronchioalveolar carcinomas and mesotheliomas), head and neck (for example cancers of the tongue, buccal cavity, larynx, pharynx, nasopharynx, tonsil, salivary glands, nasal cavity and paranasal sinuses), ovary, fallopian tubes, peritoneum, vagina, vulva, penis, cervix, myometrium, endometrium, thyroid (for example thyroid follicular carcinoma), adrenal, prostate, skin and adnexae (for example melanoma, basal cell carcinoma, squamous cell carcinoma, keratoacanthoma, dysplastic naevus); haematological malignancies (i.e. leukemias, lymphomas) and premalignant haematological disorders and disorders of borderline malignancy including haematological malignancies and related conditions of lymphoid lineage (for example acute lymphocytic leukemia [ALL], chronic lymphocytic leukemia [CLL], B-cell lymphomas such as diffuse large B-cell lymphoma [DLBCL], follicular lymphoma, Burkitt's lymphoma, mantle cell lymphoma, T-cell lymphomas and leukaemias, natural killer [NK] cell lymphomas, Hodgkin's lymphomas, hairy cell leukaemia, monoclonal gammopathy of uncertain significance, plasmacytoma, multiple myeloma, and post-transplant lymphoproliferative disorders), and haematological malignancies and related conditions of myeloid lineage (for example acute myelogenous leukemia [AML], chronic myelogenous leukemia [CML], chronic myelomonocytic leukemia [CMML], hypereosinophilic syndrome, myeloproliferative disorders such as polycythaemia vera, essential thrombocythaemia and primary myelofibrosis, myeloproliferative syndrome, myelodysplastic syndrome, and promyelocytic leukemia); tumours of mesenchymal origin, for example sarcomas of soft tissue, bone or cartilage such as osteosarcomas, fibrosarcomas, chondrosarcomas, rhabdomyosarcomas, leiomyosarcomas, liposarcomas, angiosarcomas, Kaposi's sarcoma, Ewing's sarcoma, synovial sarcomas, epithelioid sarcomas, gastrointestinal stromal tumours, benign and malignant histiocytomas, and dermatofibrosarcoma protuberans; tumours of the central or peripheral nervous system (for example astrocytomas, gliomas and glioblastomas, meningiomas, ependymomas, pineal tumours and schwannomas); endocrine tumours (for example pituitary tumours, adrenal tumours, islet cell tumours, parathyroid tumours, carcinoid tumours and medullary carcinoma of the thyroid); ocular and adnexal tumours (for example retinoblastoma); germ cell and trophoblastic tumours (for example teratomas, seminomas, dysgerminomas, hydatidiform moles and choriocarcinomas); and paediatric and embryonal tumours (for example medulloblastoma, neuroblastoma, Wilms tumour, and primitive neuroectodermal tumours); or syndromes, congenital or otherwise, which leave the patient susceptible to malignancy (for example Xeroderma Pigmentosum).
One subset of cancers that may be treated consists of gliomas and glioblastomas.
Prior to administration of a compound of any one of Embodiments 1.1 to 1.183, a patient may be screened to determine whether a cancer from which the patient is or may be suffering is one which is characterised by the presence of a mutated form of KRAS. Mutant KRAS can have a mutation at any amino acid in the protein, and in particular amino acid glycine 12, glycine 13, glutamine 61, or a combination thereof. PCR kits for detecting the presence of mutated KRAS are commercially available (for example, the cobas® KRAS Mutation Test from Roche Molecular Systems, Inc and therascreen KRAS RGQ PCR Kit from Qiagen Manchester, Ltd.)
The term ‘medicament’ as used herein refers to a pharmaceutical formulation that is of use in treating, curing or improving a disease or in treating, ameliorating or alleviating the symptoms of a disease. A pharmaceutical formulation comprises a pharmacologically active ingredient in a form not harmful to the subject it is being administered to and additional constituents designed to stabilise the active ingredient and affect its absorption into the circulation or target tissue.
It will be appreciated that references herein to “treatment” extend to prophylaxis, prevention of recurrence and suppression or amelioration of symptoms (whether mild, moderate or severe) as well as the treatment of established conditions.
Accordingly, in further Embodiments (Embodiments 2.1 to 2.19) of the Invention, there is provided:
Pharmaceutical Formulations
The pharmaceutical compositions of the invention can be in any form suitable for oral, parenteral, topical, intranasal, intrabronchial, ophthalmic, optic, rectal, intra-vaginal, or transdermal administration. Where the compositions are intended for parenteral administration, they can be formulated for intravenous, intramuscular, intraperitoneal, subcutaneous administration or for direct delivery into a target organ or tissue by injection, infusion or other means of delivery.
Pharmaceutical dosage forms suitable for oral administration include tablets, capsules, caplets, pills, lozenges, syrups, solutions, sprays, powders, granules, elixirs and suspensions, sublingual tablets, sprays, wafers or patches and buccal patches.
Pharmaceutical compositions containing the compounds according to Embodiments 1.1 to 1.183 of the invention can be formulated in accordance with known techniques, see for example, Remington's Pharmaceutical Sciences, Mack Publishing Company, Easton, Pa., USA.
Thus, tablet compositions can contain a unit dosage of active compound together with an inert diluent or carrier such as a sugar or sugar alcohol, e.g.; lactose, sucrose, sorbitol or mannitol; and/or a non-sugar derived diluent such as sodium carbonate, calcium phosphate, talc, calcium carbonate, or a cellulose or derivative thereof such as methyl cellulose, ethyl cellulose, hydroxypropyl methyl cellulose, and starches such as corn starch. Tablets may also contain such standard ingredients as binding and granulating agents such as polyvinylpyrrolidone, disintegrants (e.g. swellable crosslinked polymers such as crosslinked carboxymethylcellulose), lubricating agents (e.g. stearates), preservatives (e.g. parabens), antioxidants (e.g. BHT), buffering agents (for example phosphate or citrate buffers), and effervescent agents such as citrate/bicarbonate mixtures. Such excipients are well known and do not need to be discussed in detail here.
Capsule formulations may be of the hard gelatin or soft gelatin variety and can contain the active component in solid, semi-solid, or liquid form. Gelatin capsules can be formed from animal gelatin or synthetic or plant derived equivalents thereof.
The solid dosage forms (e.g.; tablets, capsules etc.) can be coated or un-coated, but typically have a coating, for example a protective film coating (e.g. a wax or varnish) or a release controlling coating. The coating (e.g. a Eudragit™ type polymer) can be designed to release the active component at a desired location within the gastro-intestinal tract. Thus, the coating can be selected so as to degrade under certain pH conditions within the gastrointestinal tract, thereby selectively release the compound in the stomach or in the ileum or duodenum.
Instead of, or in addition to, a coating, the drug can be presented in a solid matrix comprising a release controlling agent, for example a release delaying agent which may be adapted to selectively release the compound under conditions of varying acidity or alkalinity in the gastrointestinal tract. Alternatively, the matrix material or release retarding coating can take the form of an erodible polymer (e.g. a maleic anhydride polymer) which is substantially continuously eroded as the dosage form passes through the gastrointestinal tract.
Compositions for topical use include ointments, creams, sprays, patches, gels, liquid drops and inserts (for example intraocular inserts). Such compositions can be formulated in accordance with known methods.
Compositions for parenteral administration are typically presented as sterile aqueous or oily solutions or fine suspensions, or may be provided in finely divided sterile powder form for making up extemporaneously with sterile water for injection.
Examples of formulations for rectal or intra-vaginal administration include pessaries and suppositories which may be, for example, formed from a shaped mouldable or waxy material containing the active compound.
Compositions for administration by inhalation may take the form of inhalable powder compositions or liquid or powder sprays, and can be administrated in standard form using powder inhaler devices or aerosol dispensing devices. Such devices are well known. For administration by inhalation, the powdered formulations typically comprise the active compound together with an inert solid powdered diluent such as lactose.
The compounds of the inventions will generally be presented in unit dosage form and, as such, will typically contain sufficient compound to provide a desired level of biological activity. For example, a formulation intended for oral administration may contain from 2 milligrams to 200 milligrams of active ingredient, more usually from 10 milligrams to 100 milligrams, for example, 12.5 milligrams, 25 milligrams and 50 milligrams.
Methods of Treatment
The active compound will be administered to a patient in need thereof (for example a human or animal patient) in an amount sufficient to achieve the desired therapeutic effect.
The compounds will generally be administered to a subject in need of such administration, for example a human or animal patient, preferably a human.
The compounds will typically be administered in amounts that are therapeutically or prophylactically useful and which generally are non-toxic. However, in certain situations, the benefits of administering compounds of the invention may outweigh the disadvantages of any toxic effects or side effects, in which case it may be considered desirable to administer compounds in amounts that are associated with a degree of toxicity.
A typical daily dose of the compound can be in the range from 0.025 milligrams to 5 milligrams per kilogram of body weight, for example up to 3 milligrams per kilogram of bodyweight, and more typically 0.15 milligrams to 5 milligrams per kilogram of bodyweight although higher or lower doses may be administered where required.
By way of example, an initial starting dose of 12.5 mg may be administered 2 to 3 times a day. The dosage can be increased by 12.5 mg a day every 3 to 5 days until the maximal tolerated and effective dose is reached for the individual as determined by the physician. Ultimately, the quantity of compound administered will be commensurate with the nature of the disease or physiological condition being treated and the therapeutic benefits and the presence or absence of side effects produced by a given dosage regimen, and will be at the discretion of the physician.
Methods of Diagnosis and Treatment
Prior to administration of a compound of any one of Embodiments 1.1 to 1.183, a patient may be screened to determine whether a cancer from which the patient is or may be suffering is one which is characterised by elevated levels of PLK1 kinase and which would therefore be would be susceptible to treatment with a compound having activity against PLK1 kinase.
For example, a biological sample taken from a patient may be analysed to determine whether a cancer, that the patient is or may be suffering from is one which is characterised by a genetic abnormality or abnormal protein expression which leads to up-regulation of PLK1 kinase. The term up-regulation includes elevated expression or overexpression, including gene amplification (i.e. multiple gene copies) and increased expression by a transcriptional effect, and hyperactivity and activation, including activation by mutations. Thus, the patient may be subjected to a diagnostic test to detect a marker characteristic of up-regulation of PLK1 kinase. The term diagnosis includes screening. By marker we include genetic markers including, for example, the measurement of DNA composition to identify mutations of PLK1. The term marker also includes markers which are characteristic of up-regulation of PLK1, including enzyme activity, enzyme levels, enzyme state (e.g. phosphorylated or not) and mRNA levels of the aforementioned proteins.
Tumours with upregulation of PLK1 kinase may be particularly sensitive to PLK1 inhibitors. Tumours may preferentially be screened for upregulation of PLK1. Thus, the patient may be subjected to a diagnostic test to detect a marker characteristic of up-regulation of PLK1. The diagnostic tests are typically conducted on a biological sample selected from tumour biopsy samples, blood samples (isolation and enrichment of shed tumour cells), stool biopsies, sputum, chromosome analysis, pleural fluid and peritoneal fluid.
Methods of identification and analysis of mutations and up-regulation of proteins are known to a person skilled in the art. Screening methods could include, but are not limited to, standard methods such as reverse-transcriptase polymerase chain reaction (RT-PCR) or in-situ hybridisation.
In screening by RT-PCR, the level of mRNA in the tumour is assessed by creating a cDNA copy of the mRNA followed by amplification of the cDNA by PCR. Methods of PCR amplification, the selection of primers, and conditions for amplification, are known to a person skilled in the art. Nucleic acid manipulations and PCR are carried out by standard methods, as described for example in Ausubel, F. M. et al., eds. Current Protocols in Molecular Biology, 2004, John Wiley & Sons Inc., or Innis, M. A. et-al., eds. PCR Protocols: a guide to methods and applications, 1990, Academic Press, San Diego. Reactions and manipulations involving nucleic acid techniques are also described in Sambrook et al., 2001, 3rd Ed, Molecular Cloning: A Laboratory Manual, Cold Spring Harbor Laboratory Press. Alternatively a commercially available kit for RT-PCR (for example Roche Molecular Biochemicals) may be used, or methodology as set forth in U.S. Pat. Nos. 4,666,828; 4,683,202; 4,801,531; 5,192,659, 5,272,057, 5,882,864, and 6,218,529 and incorporated herein by reference.
An example of an in-situ hybridisation technique for assessing mRNA expression would be fluorescence in-situ hybridisation (FISH) (see Angerer, 1987 Meth. Enzymol., 152: 649).
Generally, in situ hybridization comprises the following major steps: (1) fixation of tissue to be analyzed; (2) pre-hybridization treatment of the sample to increase accessibility of target nucleic acid, and to reduce nonspecific binding; (3) hybridization of the mixture of nucleic acids to the nucleic acid in the biological structure or tissue; (4) post-hybridization washes to remove nucleic acid fragments not bound in the hybridization, and (5) detection of the hybridized nucleic acid fragments. The probes used in such applications are typically labelled, for example, with radioisotopes or fluorescent reporters. Preferred probes are sufficiently long, for example, from about 50, 100, or 200 nucleotides to about 1000 or more nucleotides, to enable specific hybridization with the target nucleic acid(s) under stringent conditions. Standard methods for carrying out FISH are described in Ausubel, F. M. et al., eds. Current Protocols in Molecular Biology, 2004, John Wiley & Sons Inc and Fluorescence In Situ Hybridization: Technical Overview by John M. S. Bartlett in Molecular Diagnosis of Cancer, Methods and Protocols, 2nd ed.; ISBN: 1-59259-760-2; March 2004, pps. 077-088; Series: Methods in Molecular Medicine.
Alternatively, the protein products expressed from the mRNAs may be assayed by immunohistochemistry of tumour samples, solid phase immunoassay with microtiter plates, Western blotting, 2-dimensional SDS-polyacrylamide gel electrophoresis, ELISA, flow cytometry and other methods known in the art for detection of specific proteins. Detection methods would include the use of site specific antibodies. The skilled person will recognize that all such well-known techniques for detection of up-regulation of PLK1 kinase could be applicable in the present case.
Prior to administration of a compound of any one of Embodiments 1.1 to 1.183, a patient may be screened to determine whether a cancer from which the patient is or may be suffering is one which is characterised by mutated KRAS and which would therefore be would be susceptible to treatment with a compound having activity against cancer cells carrying a mutant KRAS.
For example, a biological sample taken from a patient may be analysed to determine whether a cancer, that the patient is or may be suffering from is one which is characterised by a presence of mutant KRAS. Thus, for example, the patient may be subjected to a diagnostic test to detect mutations in at codons 12, 13, 61 or mixtures thereof in the KRAS protein. Commercially available diagnostic tests for mutant KRAS include the cobas® KRAS Mutation Test from Roche Molecular Systems, Inc and therascreen KRAS RGQ PCR Kit from Qiagen Manchester, Ltd.
Tumours with mutant KRAS may be particularly sensitive to PLK1 inhibitors. Methods of identification and analysis of mutations and up-regulation of proteins are known to a person skilled in the art. Screening methods could include, but are not limited to, standard methods such as reverse-transcriptase polymerase chain reaction (RT-PCR) or in-situ hybridisation as described above.
Combination Therapy
It is envisaged that the compounds of Embodiments 1.1 to 1.183 will be useful either as sole chemotherapeutic agents or, more usually, in combination therapy with chemotherapeutic agents or radiation therapy in the prophylaxis or treatment of a range of proliferative disease states or conditions. Examples of such disease states and conditions are set out above.
Particular examples of chemotherapeutic agents that may be co-administered with the compounds of Embodiments 1.1 to 1.183 include:
The invention will now be illustrated, but not limited, by reference to the specific embodiments described in the following examples.
In the examples, the following abbreviations are used.
Proton magnetic resonance (1H NMR) spectra were recorded on a Bruker 400 instrument operating at 400 MHz, in DMSO-d6 or MeOH-d4 (as indicated) at 27° C., unless otherwise stated and are reported as follows: chemical shift b/ppm (multiplicity where s=singlet, d=doublet, dd=double coublet, dt—double triplet, t=triplet, q=quartet, m=multiplet, br=broad, number of protons). The residual protic solvent was used as the internal reference.
Liquid chromatography and mass spectroscopy analyses were carried out using the system and operating conditions set out below. Where atoms with different isotopes are present and a single mass quoted, the mass quoted for the compound is the monoisotopic mass (i.e. 5Cl; 79Br etc.)
LCMS Conditions
The LCMS data given in the following examples were obtained using one of Methods B, C or, where stated, Method A below
LCMS Method A
Samples were analysed by reverse phase HPLC-MS using a Waters 2795 Alliance HT HPLC, a Micromass ZQ mass spectrometer and a Waters 996 photodiode array UV detector. The LCMS used electrospray ionisation and the chromatography system, as follows:
LCMS was carried using a X-BRIDGE C18 100×4.6 mm, 5 micron column. Column flow was 1.0 mL/min and the mobile phase used were 0.1% formic acid in water (A) and methanol (B), with an injection volume of 10 μL.
The gradient was as described below.
LCMS Method B
Samples were analysed by reverse phase HPLC-MS using a Waters 2795 Alliance HT HPLC, a Micromass ZQ mass spectrometer and a Waters 996 photodiode array UV detector. The LCMS used electrospray ionisation and the chromatography system, as follows:
LC-MS was carried out on BEH C18 50*2.1 mm 1.7 micron. Column flow was 0.55 mL/min and mobile phase used were: (A) 5 mM ammonium acetate and 0.1% formic acid in water; and (B) 0.1% formic acid in acetonitrile. The injection volume was 2 uL.
The gradient was as described below.
LCMS Method C
Samples were analysed by reverse phase HPLC-MS using a Waters 2795 Alliance HT HPLC, a Micromass ZQ mass spectrometer and a Waters 996 photodiode array UV detector. The LCMS used electrospray ionisation and the chromatography system, as follows:
LC-MS was carried out on X-BRIDGE, C18, 5 micron 4.6×100 mm Column. Flow was 1.2 mL/min and mobile phase used were: (A) 0.1% Ammonia in water; and (B) 100% methanol. The injection volume was 10 uL.
Following gradient was used for the elution.
The compounds of Examples 1 to 107 shown in Table 2 below have been prepared. Their NMR and LCMS properties are set out in Table 3.
1H NMR
(Illustrated with reference to Example 2)
Zinc chloride (1.98 g, 14.5 mmol) was heated to melting under vacuum and then allowed to cool to room temperature. Benzene (7 mL), t-butanol (0.83 g, 11.2 mmol) and triethylamine (1.13 g, 11.2 mmol) were added and the mixture stirred at room temperature for 2 hours under a nitrogen atmosphere at which point the zinc chloride had fully dissolved. Methyl 3-acetylbenzoate (2.0 g, 11.2 mmol) and 2-bromo-1-(4-bromophenyl)ethanone (1.87 g, 6.73 mmol) were added and the mixture stirred for 48 hours at room temperature. The reaction mixture was diluted with water (100 ml) and extracted with EtOAc (3×100 mL). The combined organic extracts were dried (Na2SO4) and evaporated under reduced pressure to leave a residue which was purified by column chromatography on silica gel (60-120 mesh) using 10% EtOAc/hexanes as the eluent to give the title compound (1.3 g, 48%) as a colourless oil.
A stirred solution of methyl 3-[4-(4-bromophenyl)-4-oxo-butanoyl]benzoate (0.1 g, 0.26 mmol), 2-(trifluoromethyl)aniline (0.043 g, 0.26 mmol) and PTSA (5 mg, 0.02 mmol) in dioxane (1 mL) was heated to 150° C. under microwave irradiation for one hour. The mixture was allowed to cool to room temperature and the solvents evaporated under reduced pressure. The residue was purified by column chromatography on silica gel (60-120 mesh) using 8% EtOAc/hexanes as the eluent to give the title compound (50 mg, 38%) as an off-white solid.
A mixture of methyl 3-[5-(4-bromophenyl)-1-[2-(trifluoromethyl)phenyl]pyrrol-2-yl]benzoate (50 mg, 0.09 mmol) and lithium hydroxide monohydrate (8 mg, 0.18 mmol) in THF (1 mL) and water (1 mL) was stirred at room temperature for 16 hours. The pH of the mixture was adjusted to 4 with 1 N HCl and then extracted with EtOAc (2×50 mL). The combined organic extracts were dried (Na2SO4) and evaporated under reduced pressure to leave a solid that was triturated with pentane (3×2 mL) and dried to give the title compound (27 mg, 56%) as a beige solid.
HATU (0.175 g, 0.46 mmol) was added to a stirred solution of 3-[5-(4-bromophenyl)-1-[2-(trifluoromethyl)phenyl]pyrrol-2-yl]benzoic acid (0.15 g, 0.30 mmol) in DMF (1 mL) at 0° C. under a nitrogen atmosphere. After stirring for 30 minutes DIPEA (0.16 mL, 0.92 mmol) and N′,N′-dimethylethane-1,2-diamine (29 mg, 0.33 mmol) were added and stirring continued for 30 minutes. The mixture was diluted with water (50 mL) and extracted with EtOAc (3×50 mL). The combined organic extracts were washed with brine (20 mL), dried (Na2SO4) and evaporated under reduced pressure to leave a residue which was purified by column chromatography on silica gel (60-120 mesh) using 1% MeOH/DCM as the eluent. The resulting solid was dissolved in dioxane (1 mL) and a 4N HCl solution in dioxane (0.3 mL) was added and the mixture stirred for 16 hours at room temperature. The solvents were evaporated under reduced pressure to leave a solid that was triturated with pentane (3×2 mL) and Et2O (2×2 mL) and then dried to give the title compound (71 mg, 40%) as an off-white solid.
(Illustrated with reference to Example 7)
Isobutyl chloroformate (0.6 mL, 4.95 mmol) was added dropwise over 20 minutes to a stirred solution of 3-[5-(4-bromophenyl)-1-[2-(trifluoromethyl)phenyl]pyrrol-2-yl]benzoic acid (Example 2C) (1.5 g, 3.09 mmol) and triethylamine (0.7 mL, 4.95 mmol) in THF (40 mL) at −78° C. under a nitrogen atmosphere. The solution was stirred for one hour then allowed to slowly warm to 0° C. and sodium borohydride (1.3 g, 34 mmol) was added in portions over 10 minutes. Water (20 mL) was added dropwise maintaining the internal temperature at 0° C. and the resulting mixture stirred for 20 minutes. The mixture was filtered, diluted with water (50 mL) and extracted with EtOAc (3×50 mL). The combined organic extracts were washed with brine (20 mL), dried (Na2SO4) and evaporated under reduced pressure to leave the title compound (3.0 g, 100%) which was used without further purification.
Dess-Martin periodinane (5.4 g, 12.7 mmol) was added to a solution of [3-[5-(4-bromophenyl)-1-[2-(trifluoromethyl)phenyl]pyrrol-2-yl]phenyl]methanol (3.0 g, 6.4 mmol) in DCM (30 mL) at 0° C. The mixture was stirred for 30 minutes then filtered through celite and the filtrate evaporated under reduced pressure. The residue was purified by column chromatography on silica gel (60-120 mesh) using 1% MeOH/DCM as the eluent to give the title compound (0.64 g, 21% over two steps).
Dimethylamine (2M in THF, 1.3 mL, 1.92 mmol) was added dropwise to a stirred solution of 3-[5-(4-bromophenyl)-1-[2-(trifluoromethyl)phenyl]pyrrol-2-yl]benzaldehyde (0.3 g, 0.64 mmol) in MeOH (6 mL) at 0° C. under a nitrogen atmosphere. The solution was stirred for 20 minutes then sodium borohydride (0.05 g, 1.28 mmol) was added in portions over 10 minutes maintaining the internal temperature at 0° C. The mixture was allowed to warm to room temperature and stirred for a further 20 minutes then poured into ice-water (50 mL) and extracted with EtOAc (4×30 mL). The combined organic extracts were dried (Na2SO4) and evaporated under reduced pressure to leave a residue which was purified by column chromatography on silica gel (60-120 mesh) using 3% MeOH/CHCl3 as the eluent. The resulting solid was dissolved in THF (2 mL) and 4N HCl solution in dioxane (0.3 ml) was added and the mixture stirred for 30 minutes at room temperature. The solvents were evaporated under reduced pressure to leave a solid that was triturated with pentane (3×2 mL) and then dried to give the title compound (40 mg, 12%) as an off-white solid.
(Illustrated with reference to Example 9)
Zinc chloride (24.4 g, 179 mmol) was heated to melting under vacuum and then allowed to cool to room temperature. Toluene (80 mL), t-butanol (13.2 mL, 138 mmol) and triethylamine (19.3 mL, 138 mmol) were added and the mixture stirred at room temperature for 2 hours under a nitrogen atmosphere at which point the zinc chloride had fully dissolved. 4-Cyanoacetophenone (20.0 g, 138 mmol) and 2-bromo-1-(4-bromophenyl)ethanone (38.1 g, 6.73 mmol) were added and the mixture stirred for 48 hours at room temperature. The reaction mixture was diluted with water (100 ml) and extracted with EtOAc (3×200 mL). The combined organic extracts were dried (Na2SO4) and evaporated under reduced pressure to leave a residue which was purified by column chromatography on silica gel (60-120 mesh) using 8% EtOAc/hexanes as the eluent to give the title compound (8.0 g, 17%) as a colourless oil.
A stirred solution of 4-[4-(4-bromophenyl)-4-oxo-butanoyl]benzonitrile (6.0 g, 17.6 mmol), 2-(trifluoromethyl)aniline (8.5 g, 52.8 mmol) and PTSA (0.33 g, 1.76 mmol) in dioxane (60 mL) was heated to 150° C. under microwave irradiation for 6 hours. The mixture was allowed to cool to room temperature and the solvents evaporated under reduced pressure. The residue was purified by column chromatography on silica gel (60-120 mesh) using 4% EtOAc/hexanes as the eluent to give the title compound (4.0 g, 49%) as an off-white solid.
A mixture of 4-[5-(4-bromophenyl)-1-[2-(trifluoromethyl)phenyl]pyrrol-2-yl]benzonitrile (3.44 g, 8.60 mmol) and sodium hydroxide (3.44 g, 86.0 mmol) in methanol (40 mL) and water (4 mL) was stirred at 90° C. for 18 hours. The pH of the mixture was adjusted to 4 with 1N HCl and then extracted with EtOAc (3×50 mL). The combined organic extracts were dried (Na2SO4) and evaporated under reduced pressure to leave a solid that was triturated with pentane (3×2 mL) and dried to give the title compound (3.5 g, 84%) as a white solid.
HATU (3.53 g, 9.30 mmol) was added to a stirred solution of 4-[5-(4-bromophenyl)-1-[2-(trifluoromethyl)phenyl]pyrrol-2-yl]benzoic acid (3.0 g, 6.2 mmol) in DMF (30 mL) at 0° C. under a nitrogen atmosphere. After stirring for 30 minutes DIPEA (3.3 mL, 18.6 mmol) and N′,N′-dimethylethane-1,2-diamine (0.6 g, 6.8 mmol) were added and stirring continued for 30 minutes. The mixture was diluted with water (300 mL) and extracted with EtOAc (3×100 mL). The combined organic extracts were washed with brine (50 mL), dried (Na2SO4) and evaporated under reduced pressure to leave a residue which was purified by column chromatography on silica gel (60-120 mesh) using 4% MeOH/CHCl3 as the eluent. The resulting solid was dissolved in THF (30 mL) and 4N HCl solution in dioxane (1 mL) was added and the mixture stirred for 30 minutes at room temperature. The solvents were evaporated under reduced pressure to leave a solid that was triturated with Et2O (3×10 mL) and then dried to give the title compound (2.7 g, 84%) as an off-white solid.
(Illustrated with reference to Example 16)
Zinc chloride (5.37 g, 39.4 mmol) was heated to melting under vacuum and then allowed to cool to room temperature. Toluene (20 mL), t-butanol (2.9 mL, 30.3 mmol) and triethylamine (4.2 mL, 30.3 mmol) were added and the mixture stirred at room temperature for 2 hours under a nitrogen atmosphere at which point the zinc chloride had fully dissolved. 3-Nitroacetophenone (5.0 g, 30.3 mmol) and 2-bromo-1-(4-bromophenyl)ethanone (8.35 g, 14.0 mmol) were added and the mixture stirred for 24 hours at room temperature. The reaction mixture was diluted with water (50 mL), filtered through celite and extracted with EtOAc (3×100 mL). The combined organic extracts were dried (Na2SO4) and evaporated under reduced pressure to leave a residue which was purified by column chromatography on silica gel (60-120 mesh) using 8% EtOAc/hexanes as the eluent to give the title compound (2.1 g, 19%) as a yellow solid.
A stirred solution of 1-(4-bromophenyl)-4-(3-nitrophenyl)butane-1,4-dione (2.0 g, 5.50 mmol), 2-(trifluoromethyl)aniline (2.66 g, 16.5 mmol) and PTSA (0.11 g, 5.50 mmol) in dioxane (20 mL) was heated to 150° C. under microwave irradiation for 6 hours. The mixture was allowed to cool to room temperature and the solvents evaporated under reduced pressure. The residue was purified by column chromatography on silica gel (60-120 mesh) using 10% EtOAc/hexanes as the eluent to give the title compound (2.2 g, 82%) as an off-white solid.
Sodium borohydride (2.04 g, 5.4 mmol) was added in portions over 30 minutes to a stirred solution of 2-(4-bromophenyl)-5-(3-nitrophenyl)-1-[2-(trifluoromethyl)phenyl]pyrrole (2.2 g, 4.50 mmol) and copper (II) acetate (82 mg, 0.45 mmol) in methanol (20 mL) at 0° C. The mixture was allowed to warm to room temperature and stirring continued for one hour. The solvents were evaporated under reduced pressure to leave a residue which was purified by column chromatography on silica gel (60-120 mesh) using 15% EtOAc/hexanes as the eluent to give the title compound (2.0 g, 97%) as an off-white solid.
A solution of 3-[5-(4-bromophenyl)-1-[2-(trifluoromethyl)phenyl]pyrrol-2-yl]aniline (2.0 g, 4.4 mmol) in DMF (10 mL) was added dropwise to a stirred slurry of sodium hydride (60% in oil, 0.53 g, 13.2 mmol) in DMF (10 mL) at room temperature under a nitrogen atmosphere. After stirring for 30 minutes 3-chloro-N,N-dimethylpropan-1-amine hydrochloride (0.75 g, 4.8 mmol) was added and the mixture heated to 80° C. for 3 hours. The solution was allowed to cool to room temperature and then carefully poured into ice-water (100 mL) and extracted with EtOAc (4×50 mL). The combined organic extracts were washed with brine (50 mL), dried (Na2SO4) and evaporated under reduced pressure to leave a residue which was purified by column chromatography on silica gel (60-120 mesh) using 6% MeOH/CHCl3 as the eluent. The resulting solid was dissolved in THF (30 mL) and 4N HCl solution in dioxane (1 ml) was added and the mixture stirred for 30 minutes at room temperature. The solvents were evaporated under reduced pressure to leave a solid that was triturated with Et2O (3×10 mL) and then dried to give the title compound (120 mg, 5%) as an off-white solid.
(Illustrated with reference to Example 17)
Acetyl chloride (3.9 mL, 55.0 mmol) was added dropwise to a stirred solution of 3-hydroxyacetophenone (5.0 g, 36.7 mmol) and TFA (1.1 mL, 14.7 mmol) in chloroform (50 mL) under a nitrogen atmosphere. The resulting solution was heated to 80° C. for 20 hours then allowed to cool to room temperature and poured into saturated NaHCO3 solution (50 mL). The mixture was extracted with EtOAc (3×50 mL) then the combined organic extracts were washed with brine (20 mL), dried (Na2SO4) and evaporated under reduced pressure to leave the title compound (2.8 g, 43%) which was used without further purification.
Zinc chloride (2.48 g, 18.2 mmol) was heated to melting under vacuum and then allowed to cool to room temperature. Toluene (10 mL), t-butanol (1.4 mL, 14.0 mmol) and triethylamine (2.0 mL, 14.0 mmol) were added and the mixture stirred at room temperature for 2 hours under a nitrogen atmosphere at which point the zinc chloride had fully dissolved. (3-Acetylphenyl) acetate (2.5 g, 14.0 mmol) and 2-bromo-1-(4-bromophenyl)ethanone (3.90 g, 14.0 mmol) were added and the mixture stirred for 18 hours at room temperature. The reaction mixture was diluted with water (50 ml), filtered through celite and extracted with EtOAc (3×50 mL). The combined organic extracts were dried (Na2SO4) and evaporated under reduced pressure to leave a solid that was triturated with pentane (3×10 mL) to give the title compound (2.1 g, 40%) as a beige solid.
A mixture of methyl [3-[4-(4-bromophenyl)-4-oxo-butanoyl]phenyl] acetate (2.0 mg, 5.40 mmol) and lithium hydroxide monohydrate (0.90 g, 21.6 mmol) in THF (20 mL) and water (20 mL) was stirred at room temperature for 10 minutes. The pH of the mixture was adjusted to 4 with 1N HCl and then extracted with EtOAc (3×50 mL). The combined organic extracts were dried (Na2SO4) and evaporated under reduced pressure to leave a solid that was triturated with pentane (3×2 mL) and dried to give the title compound (1.50 g, 85%) as a beige solid.
A stirred solution of 1-(4-bromophenyl)-4-(3-hydroxyphenyl)butane-1,4-dione (1.0 g, 3.0 mmol), 2-(trifluoromethyl)aniline (1.45 g, 9.0 mmol) and PTSA (0.057 g, 0.30 mmol) in dioxane (10 mL) was heated to 150° C. under microwave irradiation for 2 hours. The mixture was allowed to cool to room temperature and the solvents evaporated under reduced pressure. The residue was purified by column chromatography on silica gel (60-120 mesh) using 10% EtOAc/hexanes as the eluent to give the title compound (0.25 g, 18%) as an off-white solid.
A solution of 3-[5-(4-bromophenyl)-1-[2-(trifluoromethyl)phenyl]pyrrol-2-yl]phenol (0.20 g, 0.44 mmol) in DMF (1 mL) was added dropwise to a stirred slurry of sodium hydride (60% in oil, 0.53 g, 13.2 mmol) in DMF (1 mL) at room temperature under a nitrogen atmosphere. After stirring for 30 minutes 3-chloro-N,N-dimethylpropan-1-amine hydrochloride (0.076 g, 0.48 mmol) was added and the mixture heated to 70° C. for one hour. The solution was allowed to cool to room temperature and then carefully poured into ice-water (20 mL) and extracted with EtOAc (4×30 mL). The combined organic extracts were washed with brine (50 mL), dried (Na2SO4) and evaporated under reduced pressure to leave a residue which was purified by column chromatography on silica gel (60-120 mesh) using 8% MeOH/CHCl3 as the eluent. The resulting solid was dissolved in THF (5 mL) and 4N HCl solution in dioxane (0.1 ml) was added and the mixture stirred for 30 minutes at room temperature. The solvents were evaporated under reduced pressure to leave a solid that was triturated with Et2O (3×10 mL) and then dried to give the title compound (150 mg, 64%) as an off-white solid.
(Illustrated with reference to Example 21)
Methane sulfonyl chloride (0.11 g, 0.96 mmol) was added dropwise to a stirred solution of [3-[5-(4-bromophenyl)-1-[2-(trifluoromethyl)phenyl]pyrrol-2-yl]phenyl]methanol (Example 7B) (0.3 g, 0.64 mmol) and triethylamine (0.13 mL, 0.96 mmol) in THF (3 mL) at 0° C. under a nitrogen atmosphere. The mixture was stirred for 30 minutes then partitioned between saturated NaHCO3 solution (30 mL) and EtOAc (30 mL). The separated aqueous phase was extracted with EtOAc (3×30 mL) and then the combined organic extracts were washed with brine (10 mL), dried (Na2SO4) and evaporated under reduced pressure to give the title compound (0.62 g, quantitative) which was used without further purification.
A 9M ammonia in MeOH solution (2 mL) was added to a stirred solution of [3-[5-(4-bromophenyl)-1-[2-(trifluoromethyl)phenyl]pyrrol-2-yl]phenyl]methyl methanesulfonate (0.62 g, 1.1 mmol) in ethanol (6 mL) at −5° C. under a nitrogen atmosphere. The solution was stirred at −5° C. for 2 hours then the solvents were evaporated under reduced pressure. The residue was purified by column chromatography on silica gel (60-120 mesh) using 6% MeOH/CHCl3 as the eluent to give the title compound (0.32 g, 60%) as an off-white solid.
HATU (0.52 g, 1.36 mmol) was added to a stirred solution of N,N-dimethylglycine (70 mg, 0.68 mmol) in DMF (3 mL) at 0° C. under a nitrogen atmosphere. After stirring for 30 minutes DIPEA (0.35 mL, 2.04 mmol) and [3-[5-(4-bromophenyl)-1-[2-(trifluoromethyl)phenyl]pyrrol-2-yl]phenyl]methanamine (0.32 g, 0.68 mmol) were added and stirring continued for 30 minutes. The mixture was diluted with water (30 mL) and extracted with EtOAc (3×30 mL). The combined organic extracts were washed with brine (10 mL), dried (Na2SO4) and evaporated under reduced pressure to leave a residue which was purified by column chromatography on silica gel (60-120 mesh) using 4% MeOH/CHCl3 as the eluent. The resulting solid was dissolved in THF (30 mL) and 4N HCl solution in dioxane (1 mL) was added and the mixture stirred for 30 minutes at room temperature. The solvents were evaporated under reduced pressure to leave a solid that was triturated with Et2O (3×10 mL) and then dried to give the title compound (19 mg, 5%) as an off-white solid.
(Illustrated with reference to Example 29)
A stirred solution of 4-bromoacetophenone (1.0 g, 5.0 mmol), paraformaldehyde (0.15 g, 5.0 mol), N,N-dimethylamine hydrochloride (0.41 g, 5.0 mmol) and concentrated hydrochloric acid (0.5 mL) in absolute ethanol (15 mL) were heated to 90° C. for 4 hours. The solution was allowed to cool to room temperature and the solvents were evaporated under reduced pressure. The residue was triturated with n-pentane (3×20 mL), Et2O (3×10 mL) and dried to give the title compound (1.26 g, 86%) as a white solid.
Concentrated sulfuric acid (3.9 mL, 71.6 mmol) was added dropwise over 15 minutes to a stirred suspension of 2,5-pyridinedicarboxylic acid (3.0 g, 17.9 mol) in absolute ethanol (10 mL) and the resulting mixture heated to reflux for 18 hours. The solution was allowed to cool to room temperature and the solvents evaporated under reduced pressure. Saturated NaHCO3 solution was added to the residue to adjust the pH to ˜8 then the aqueous phase was extracted with EtOAc (4×50 mL). The combined organic extracts were washed with brine (30 mL), dried (Na2SO4) and evaporated under reduced pressure to leave the title compound (3.0 g, 75%) which was used without further purification.
Sodium borohydride (1.27 g, 33.5 mmol) and anhydrous calcium chloride (2.35 g, 21.2 mmol) was added in several portions over 30 minutes to a stirred solution of diethyl pyridine-2,5-dicarboxylate (3.0 g, 13.4 mmol) in ethanol (12 mL) and THF (6 mL) at 0° C. under a nitrogen atmosphere. The mixture was allowed to warm to room temperature and stirring continued for one hour then poured into saturated NH4Cl solution (150 mL) and extracted with EtOAc (5×50 mL). The combined organic extracts were dried (Na2SO4) and evaporated under reduced pressure to leave a residue which was purified by column chromatography on silica gel (60-120 mesh) using 36% EtOAc/hexanes as the eluent to give the title compound (1.5 g, 62%) as an off-white solid.
Dess-Martin periodinane (4.24 g, 10.0 mmol) was added to a solution of ethyl 6-(hydroxymethyl)pyridine-3-carboxylate (1.5 g, 8.3 mmol) in DCM (30 mL) at 0° C. The mixture was stirred for 30 minutes then filtered through celite and the filtrate evaporated under reduced pressure. The residue was purified by column chromatography on silica gel (60-120 mesh) using 9% EtOAc/hexanes as the eluent to give the title compound (0.83 g, 56%).
Ethyl 6-formylpyridine-3-carboxylate (0.61 g, 3.4 mmol) and 3-ethyl-5-(2-hydroxyethyl)-4-methylthiazoliumbromide (0.18 g, 0.70 mmol) were added to a stirred solution of 1-(4-bromophenyl)-3-(dimethylamino)propan-1-one hydrochloride (1.0 g, 3.4 mmol) and triethylamine (0.95 mL, 6.8 mmol) in 1,2-dimethoxyethane (15 mL). The resulting solution was heated to 100° C. for 5 hours then allowed to cool to room temperature and diluted with EtOAc (150 mL). The solution was washed with water (3×50 mL), brine (20 mL), dried (Na2SO4) and evaporated under reduced pressure to leave a residue that was purified by column chromatography on silica gel (60-120 mesh) using 12% EtOAc/hexane as the eluent to give the title compound (0.67 g, 44%) as a beige solid.
A stirred solution of ethyl 6-[4-(4-bromophenyl)-4-oxo-butanoyl]pyridine-3-carboxylate (0.67 g, 1.7 mmol), 2-(trifluoromethyl)aniline (0.82 g, 5.1 mmol) and PTSA (0.040 g, 0.20 mmol) in dioxane (15 mL) was heated to 170° C. under microwave irradiation for 5 hours. The mixture was allowed to cool to room temperature and the solvents evaporated under reduced pressure. The residue was purified by column chromatography on silica gel (60-120 mesh) using 10% EtOAc/hexanes as the eluent to give the title compound (0.63 g, 71%) as an off-white solid.
A mixture of methyl ethyl 6-[5-(4-bromophenyl)-1-[2-(trifluoromethyl)phenyl]pyrrol-2-yl]pyridine-3-carboxylate (0.63 g, 1.20 mmol) and lithium hydroxide monohydrate (0.20 g, 4.8 mmol) in THF (6 mL) and water (6 mL) was stirred at 90° C. for 3 hours. The cooled solution was diluted with water (60 mL), neutralized with 10% KHSO4 solution and then extracted with EtOAc (3×30 mL). The combined organic extracts were dried (Na2SO4) and evaporated under reduced pressure to leave a solid that was purified by column chromatography on silica gel (60-120 mesh) using 45% EtOAc/hexane as the eluent to give the title compound (0.48 g, 81%) as a white solid.
HATU (0.21 g, 2.40 mmol) was added to a stirred solution of 6-[5-(4-bromophenyl)-1-[2-(trifluoromethyl)phenyl]pyrrol-2-yl]pyridine-3-carboxylic acid (0.41 g, 0.8 mmol) in DMF (1 mL) at 0° C. under a nitrogen atmosphere. After stirring for 30 minutes DIPEA (0.40 mL, 2.4 mmol) and N′,N′-dimethylethane-1,2-diamine (0.21 g, 2.40 mmol) were added and stirring continued for 40 minutes. The mixture was diluted with water (50 mL) and extracted with EtOAc (3×50 mL). The combined organic extracts were washed with brine (20 mL), dried (Na2SO4) and evaporated under reduced pressure to leave a residue which was purified by column chromatography on silica gel (60-120 mesh) using 5% MeOH/CHCl3 as the eluent. The resulting solid was dissolved in dioxane (5 mL) and a 4N HCl solution in dioxane (1.5 mL) was added and the mixture stirred for 30 minutes at room temperature. The solvents were evaporated under reduced pressure to leave a solid that was triturated with pentane (3×2 mL) and Et2O (2×2 mL) and then dried to give the title compound (0.30 g, 72%) as an off-white solid.
Experimental Procedure for Example 33
The compound of Example 33 was made by route C involving the following sequence of reactions:
Zinc chloride (30.5 g, 0.223 mol) was heated up to melting temperature in a reaction flask in vacuo followed by cooling to room temperature (RT) in vacuo. To this mixture was added toluene (100 mL), tert-butanol (16.5 mL, 0.172 mol) and triethylamine (24 mL, 0.172 mol) under a nitrogen atmosphere. The reaction mixture (RM) was then stirred at the same temperature for 2 h until all the zinc chloride had dissolved. After this, 4-cyanoacetophenone (25 g, 0.172 mol) and 4-chlorophenacylbromide (40.2 g, 0.172 mol) were added at RT and the reaction mixture was stirred at the same temperature for 48 h.
The reaction mixture was diluted with ethyl acetate (1 L) and then washed with water (4×250 mL) followed by brine solution (1×300 mL). The organic layer was separated off and dried over sodium sulphate then filtered. The filtrate was concentrated in vacuo to afford crude title product, which was further purified by triturating with methyl tert-butyl ether to afford the title product. Yield: 31.0 g (61%).
To a solution of 4-[4-(4-chlorophenyl)-4-oxo-butanoyl]benzonitrile (30.0 g, 0.1 mol) and 2-trifluoromethyl aniline (40.64 mL, 0.323 mol) in dioxane (300 mL) was added p-toluene sulfonic acid monohydrate (1.92 g, 0.010 mol) at RT. The reaction mixture was then heated at 150° C. for 16 h.
The reaction mixture was concentrated in vacuo to afford crude product, which was further purified by column chromatography using neutral silica gel. Elution at 5-7% ethyl acetate in hexane afforded the title product. Yield: 19.0 g (45%).
To a solution of 4-[5-(4-chlorophenyl)-1-[2-(trifluoromethyl)phenyl]pyrrol-2-yl]benzonitrile (19 g, 0.045 mol) in methanol (190 mL) was added a solution of sodium hydroxide (18 g, 0.45 mol) in water (95 mL) at RT. The resulting reaction mixture was stirred at 90° C. for 18 h.
The reaction mixture was concentrated in vacuo at 40° C. to afford crude product, which was then acidified using a saturated solution of potassium hydrogen sulphate. The aqueous was extracted with ethyl acetate (3×200 mL). The organics were separated off, combined and washed with brine solution (1×100 mL). The organics were again separated off, dried over sodium sulphate, filtered and then concentrated in vacuo. Further purification by trituration with n-pentane afforded title product. Yield: 15.0 g (75%).
To a solution of 4-[5-(4-chlorophenyl)-1-[2-(trifluoromethyl)phenyl]pyrrol-2-yl]benzoic acid (15 g, 0.034 mol) in DMF (150 mL) was added N-[(dimethylamino)-1H-1,2,3-triazolo-[4,5-b]pyridin-1-ylmethylene]-N-methylmethanaminium hexafluorophosphate N-oxide (HATU, 19.38 g, 0.051 mol) at 0° C. and the reaction mixture was stirred for 30 minutes at the same temperature. After 30 minutes, N,N′-dimethyl ethylenediamine (4.09 mL, 0.038 mol) and DIPEA (18.26 mL, 0.105 mol) were added at 0° C. and the resulting reaction mixture was stirred at the same temperature for 30 minutes.
The reaction mixture was diluted with ethyl acetate (500 mL), washed with ice-cold water (5×100 mL), followed by brine solution (100 mL) then dried over sodium sulphate. The organics were filtered and concentrated in vacuo. The crude product was further purified by column chromatography using basic alumina (˜100-300 uM), eluting with dichloromethane. Yield: 11.0 g (63%).
To a solution of 4-[5-(4-chlorophenyl)-1-[2-(trifluoromethyl)phenyl]pyrrol-2-yl]-N-[2-(dimethylamino)ethyl]benzamide (10.5 g, 0.0205 mol) in tetrahydrofuran (100 mL) was added 4N HCl in dioxane (5 mL) at RT. The resulting reaction mixture was then stirred for 30 minutes at RT.
The reaction mixture was concentrated in vacuo then further purified by trituration in n-pentane to afford title product. Yield: 10.5 g (93%).
(Illustrated with reference to Example 45)
Isobutyl chloroformate (0.6 mL, 4.95 mmol) was added dropwise over 20 minutes to a stirred solution of 4-[5-(4-bromophenyl)-1-[2-(trifluoromethyl)phenyl]pyrrol-2-yl]benzoic acid (Example 9C) (1.5 g, 3.09 mmol) and triethylamine (0.7 mL, 4.95 mmol) in THF (40 mL) at −78° C. under a nitrogen atmosphere. The solution was stirred for one hour then allowed to slowly warm to 0° C. and sodium borohydride (1.3 g, 34 mmol) was added in portions over 10 minutes. Water (20 mL) was added dropwise maintaining in the internal temperature at 0° C. and the resulting mixture stirred for 20 minutes. The mixture was filtered, diluted with water (50 mL) and extracted with EtOAc (3×50 mL). The combined organic extracts were washed with brine (20 mL), dried (Na2SO4) and evaporated under reduced pressure to leave a residue that was purified by column chromatography on silica gel (60-120 mesh) using 17% EtOAc/hexane as the eluent to give the title compound (1.30 g, 89%) as a solid.
A solution of 3-[5-(4-bromophenyl)-1-[2-(trifluoromethyl)phenyl]pyrrol-2-yl]phenol (0.30 g, 0.64 mmol) in DMF (0.7 mL) was added dropwise to a stirred slurry of sodium hydride (60% in oil, 0.68 g, 0.96 mmol) in DMF (0.5 mL) at room temperature under a nitrogen atmosphere. After stirring for 30 minutes 2-bromo-N,N-dimethyl-ethanamine hydrobromide (0.15 g, 0.64 mmol) was added and the mixture heated to 90° C. for 18 hours. The solution was allowed to cool to room temperature and then carefully poured into ice-water (20 mL) and extracted with EtOAc (3×30 mL). The combined organic extracts were washed with brine (20 mL), dried (Na2SO4) and evaporated under reduced pressure to leave a residue which was purified by column chromatography on silica gel (60-120 mesh) using 8% MeOH/CHCl3 as the eluent. The resulting solid was dissolved in THF (5 mL) and 4N HCl solution in dioxane (0.1 mL) was added and the mixture stirred for 30 minutes at room temperature. The solvents were evaporated under reduced pressure to leave a solid that was triturated with Et2O (3×10 mL) and then dried to give the title compound (58 mg, 16%) as an off-white solid.
(Illustrated with reference to Example 46)
HATU (0.67 g, 1.8 mmol) was added to a stirred solution of 3-(dimethylamino)propanoic acid (0.14 g, 0.87 mmol) in DMF (5 mL) at 0° C. under a nitrogen atmosphere. After stirring for 30 minutes DIPEA (0.46 mL, 2.6 mmol) and 3-[5-(4-bromophenyl)-1-[2-(trifluoromethyl)phenyl]pyrrol-2-yl]aniline (prepared in an analogous manner to Example 16C) (0.40 g, 0.87 mmol) were added and stirring continued for 30 minutes. The mixture was diluted with water (30 mL) and extracted with EtOAc (3×40 mL). The combined organic extracts were washed with brine (20 mL), dried (Na2SO4) and evaporated under reduced pressure to leave a residue which was purified by column chromatography on silica gel (60-120 mesh) using 5% MeOH/CHCl3 as the eluent. The resulting solid was dissolved in dioxane (5 mL) and a 4N HCl solution in dioxane (1.5 mL) was added and the mixture stirred for 30 minutes at room temperature. The solvents were evaporated under reduced pressure to leave a solid that was triturated with pentane (3×2 mL) and Et2O (2×2 mL) and then dried to give the title compound (0.058 g, 11%) as an off-white solid.
(Illustrated with reference to Example 47)
Concentrated sulfuric acid (1.0 mL, 18.4 mmol) was added dropwise over 15 minutes to a stirred solution of 2-(4-bromophenyl)acetic acid (4.0 g, 18.6 mol) in methanol (40 mL) and the resulting mixture heated to reflux for 4 hours. The solution was allowed to cool to room temperature and the solvents evaporated under reduced pressure. Saturated NaHCO3 solution was added to the residue to adjust the pH to ˜8, then the aqueous phase was extracted with EtOAc (4×50 mL). The combined organic extracts were washed with brine (30 mL), dried (Na2SO4) and evaporated under reduced pressure to leave the title compound (3.0 g, 70%) which was used without further purification.
Nitrogen was bubbled through a solution of methyl 2-(4-bromophenyl)acetate (3.0 g, 13.1 mmol) and tributyl(1-ethoxyvinyl)tin (5.67 g, 15.7 mmol) in toluene (30 mL) for 20 minutes then tetrakis(triphenylphosphine)palladium(0) (0.91 g, 7.9 mmol) was added and the resulting stirred mixture heated to 80° C. for 20 hours. The reaction mixture was allowed to cool to room temperature and 18% aqueous HCl (5 mL) was added and stirring continued for 30 minutes. The mixture was then diluted with water (50 mL), filtered through celite and the filtrate extracted with EtOAc (3×50 mL). The combined organic extracts were washed with brine (20 mL), dried (Na2SO4) and evaporated under reduced pressure to leave a residue which was purified by column chromatography on silica gel (60-120 mesh) using 20% EtOAc/hexane as the eluent to give the title compound (2.0 g, 79%) as a colourless oil.
Zinc chloride (0.53 g, 3.9 mmol) was heated to melting under vacuum and then allowed to cool to room temperature. Toluene (4 mL), t-butanol (0.25 mL, 2.6 mmol) and triethylamine (0.35 mL, 2.6 mmol) were added and the mixture stirred at room temperature for 2 hours under a nitrogen atmosphere at which point the zinc chloride had fully dissolved. Methyl 2-(4-acetylphenyl)acetate (0.5 g, 2.6 mmol) and 2-bromo-1-(4-bromophenyl)ethanone (0.72 g, 2.6 mmol) were added and the mixture stirred for 18 hours at room temperature. The reaction mixture was diluted with water (20 mL) and extracted with EtOAc (3×20 mL). The combined organic extracts were dried (Na2SO4) and evaporated under reduced pressure to leave a residue which was purified by trituration with n-pentane (3×10 mL) to give the title compound (0.4 g, 40%) as an off-white solid.
A stirred solution of methyl 2-[4-[4-(4-bromophenyl)-4-oxo-butanoyl]phenyl]acetate (0.40 g, 1.0 mmol), 2-(trifluoromethyl)aniline (0.48 g, 3.0 mmol) and PTSA (0.019 g, 0.10 mmol) in dioxane (4 mL) was heated to 150° C. under microwave irradiation for 4 hours. The mixture was allowed to cool to room temperature and the solvents evaporated under reduced pressure. The residue was purified by column chromatography on silica gel (60-120 mesh) using 7% EtOAc/hexanes as the eluent to give the title compound (0.08 g, 15%) as an off-white solid.
A mixture of methyl 2-[4-[5-(4-bromophenyl)-1-[2-(trifluoromethyl)phenyl]pyrrol-2-yl]phenyl]acetate (0.08 g, 0.16 mmol) and lithium hydroxide monohydrate (0.026 g, 0.62 mmol) in THF (1 mL) and water (1 mL) was stirred at 70° C. for 4 hours. The cooled solution was diluted with water (60 mL), neutralized with 10% KHSO4 solution and then extracted with EtOAc (3×10 mL). The combined organic extracts were dried (Na2SO4) and evaporated under reduced pressure to leave a solid that was purified by triturating with Et2O (3×2 mL), n-pentane (2×5 mL) and dried to give the title compound (0.05 g, 64%) as a white solid.
(Illustrated with reference to Example 44)
Concentrated ammonia solution (12 mL) was added dropwise over 15 minutes to a stirred solution of 4-bromobenzenesulfonyl chloride (6.0 g, 23.6 mmol) in MeOH (60 mL) at room temperature. The mixture was stirred for one hour then concentrated under reduced pressure to leave a solid which was taken up in cold water (50 mL). The solid was collected by filtration, washed with water (2×10 mL) and dried to give the title compound (5.0 g, 85%) as a white solid.
Nitrogen was bubbled through a stirred solution of 4-bromobenzenesulfonamide (4.0 g, 16.0 mmol) and tributyl(1-ethoxyvinyl)tin (6.93 g, 19.2 mmol) in toluene (40 mL) for 20 minutes then tetrakis(triphenylphosphine)palladium(0) (1.1 g, 6.0 mmol) was added and the resulting mixture heated to 100° C. for 5 hours. The reaction mixture was allowed to cool to room temperature and 18% aqueous HCl (5 mL) was added and stirring continued for 30 minutes. The mixture was then diluted with water (50 mL), filtered through celite and the filtrate extracted with EtOAc (3×50 mL). The combined organic extracts were washed with brine (20 mL), dried (Na2SO4) and evaporated under reduced pressure to leave a residue which was purified by column chromatography on silica gel (60-120 mesh) using 85% EtOAc/hexane as the eluent to give the title compound (2.5 g, 79%) as a white solid.
Zinc chloride (2.21 g, 16.2 mmol) was heated to melting under vacuum and then allowed to cool to room temperature. THF (25 mL), t-butanol (1.2 mL, 12.5 mmol) and triethylamine (0.35 mL, 12.5 mmol) were added and the mixture stirred at room temperature for 2 hours under a nitrogen atmosphere at which point the zinc chloride had fully dissolved. 4-Acetylbenzenesulfonamide (2.5 g, 12.5 mmol) and 2-bromo-1-(4-bromophenyl)ethanone (3.44 g, 12.5 mmol) were added and the mixture stirred for 48 hours at room temperature. The reaction mixture was diluted with water (50 ml) and extracted with EtOAc (3×80 mL). The combined organic extracts were dried (Na2SO4) and evaporated under reduced pressure to leave a residue which was purified by column chromatography on silica gel (60-120 mesh) using 2% MeOH/CHCl3 as the eluent to give the title compound (1.2 g, 24%) as a white solid.
A stirred solution of 4-[4-(4-bromophenyl)-4-oxo-butanoyl]benzenesulfonamide (1.20 g, 3.0 mmol), 2-(trifluoromethyl)aniline (1.45 g, 9.0 mmol) and PTSA (0.057 g, 0.30 mmol) in dioxane (5 mL) was heated to 150° C. for 8 hours. The mixture was allowed to cool to room temperature and the solvents evaporated under reduced pressure. The residue was purified by column chromatography on silica gel (60-120 mesh) using 50% EtOAc/hexanes as the eluent to give the title compound (0.80 g, 51%) as an off-white solid.
A stirred mixture of 4-[5-(4-bromophenyl)-1-[2-(trifluoromethyl)phenyl]pyrrol-2-yl]benzenesulfonamide (0.43 g, 0.82 mmol), potassium carbonate (0.34 g, 2.48 mmol) and 2-chloro-N,N-dimethylethanamine hydrochloride (0.13 g, 0.90 mmoL) in anhydrous DMF (5 mL) was heated to 70° C. for 4 hours. The mixture was allowed to cool to room temperature and then poured in to water (50 mL) and extracted with EtOAc (3×50 mL). The combined organic extracts were washed with water (2×15 mL), dried (Na2SO4) and evaporated under reduced pressure to leave a residue which was purified by column chromatography on silica gel (60-120 mesh) using 4% MeOH/CHCl3 as the eluent. The resulting solid was dissolved in THF (10 mL) and a 4N HCl solution in dioxane (0.1 mL) was added and the mixture stirred for 30 minutes at room temperature. The solvents were evaporated under reduced pressure to leave a solid that was triturated with pentane (3×2 mL) and Et2O (2×2 mL) and then dried to give the title compound (0.13 g, 34%) as an off-white solid.
(Illustrated with reference to Example 82)
A solution of 1-bromo-2-(trifluoromethyl)benzene (2.9 g, 12.9 mmol) in anhydrous THF (5 mL) was added to activated magnesium metal (0.31 g, 12.9 mmol) in a sealed tube under a nitrogen atmosphere. The resulting mixture was stirred vigorously for 3 hours at room temperature. The resulting solution was added to a stirred solution of 2-(4-chlorophenyl)acetaldehyde (1.0 g, 6.4 mmol) in anhydrous THF (25 mL) at 0° C. under a nitrogen atmosphere. The resulting mixture was allowed to warm slowly to room temperature and then heated to reflux for 2 hours. The mixture was allowed to cool to room temperature and then poured in to saturated NH4Cl solution (100 mL) and extracted with EtOAc (3×200 mL). The combined organic extracts were washed with brine (2×25 mL), dried (Na2SO4) and evaporated under reduced pressure to leave a residue which was purified by column chromatography on silica gel (60-120 mesh) using 4% EtOAc/hexanes as the eluent to give the title compound (0.6 g, 31%) as a colourless oil.
Dess-Martin periodinane (1.0 g, 2.3 mmol) was added in portions over 10 minutes to a stirred solution of 2-(4-chlorophenyl)-1-[2-(trifluoromethyl)phenyl]ethanol (0.6 g, 1.9 mmol) in DCM (50 mL) and the resulting mixture stirred at room temperature for 3 hours. The mixture was filtered through celite and the filtrate evaporated under reduced pressure to leave a residue which was purified by column chromatography on silica gel (60-120 mesh) using 1% EtOAc/hexanes as the eluent to give the title compound (0.4 g, 67%) as a colourless oil.
A solution of N,N-dimethylformamide dimethyl acetal (0.32 g, 2.68 mmol) in DMF (1 mL) was added dropwise to a stirred solution of 2-(4-chlorophenyl)-1-[2-(trifluoromethyl)phenyl]ethanone (0.4 g, 1.34 mmol) in DMF (4 mL) at room temperature under a nitrogen atmosphere. The mixture was heated to 90° C. for 3 hours then allowed to cool to room temperature and poured in to water (50 mL) and extracted with EtOAc (3×150 mL). The combined organic extracts were washed with brine (2×10 mL), dried (Na2SO4) and evaporated under reduced pressure to leave a residue which was purified by column chromatography on silica gel (60-120 mesh) using 25% EtOAc/hexanes as the eluent to give the title compound (0.39 g, 82%) as a white solid.
A mixture of (E)-2-(4-chlorophenyl)-3-(dimethylamino)-1-[2-(trifluoromethyl)phenyl]prop-2-en-1-one (0.39 g, 1.1 mmol), 4-cyanophenyihydrazine hydrochloride (0.21 g, 1.21 mmol) and sodium carbonate (82 mg, 0.77 mmol) in MeOH (40 mL) and water (80 mL) was stirred at room temperature for 15 minutes. Acetic acid (8 mL) was added dropwise over 10 minutes then the resulting mixture was heated to 140° C. for 8 hours. The cooled solution was neutralized with saturated Na2CO3 solution and extracted with EtOAc (3×150 mL). The combined organic extracts were washed with brine (2×25 mL), dried (Na2SO4) and evaporated under reduced pressure to leave a residue which was triturated with Et2O (3×10 mL) and pentane (3×10 mL) to give the title compound (0.4 g, 79%) as a white solid.
A mixture of 4-[4-(4-chlorophenyl)-5-[2-(trifluoromethyl)phenyl]pyrazol-1-yl]benzonitrile (0.40 g, 0.94 mmol) and sodium hydroxide (0.38 g, 9.44 mmol) in methanol (5 mL) and water (5 mL) was stirred at 80° C. for 3 hours. The pH of the mixture was adjusted to 4 with 1 N HCl and the resulting solid collected by filtration. The collected solid was washed with water (2×5 mL) and hexane (2×5 mL) and dried to give the title compound (0.30 g, 77%) as a white solid.
HATU (0.20 g, 0.53 mmol) was added to a stirred solution of 4-[4-(4-chlorophenyl)-5-[2-(trifluoromethyl)phenyl]pyrazol-1-yl]benzoic acid (0.15 g, 0.35 mmol) in DMF (2 mL) at 0° C. under a nitrogen atmosphere. After stirring for 30 minutes, DIPEA (0.2 mL, 1.01 mmol) and N′,N′-dimethylethane-1,2-diamine (37 mg, 0.42 mmol) were added and stirring continued for 90 minutes. The mixture was diluted with water (50 mL) and extracted with EtOAc (3×100 mL). The combined organic extracts were washed with brine (50 mL), dried (Na2SO4) and evaporated under reduced pressure to leave a residue which was purified by column chromatography on silica gel (60-120 mesh) using 4% MeOH/CHCl3 as the eluent. The resulting solid was dissolved in THF (2 mL) and 4N HCl solution in dioxane (0.1 ml) was added and the mixture stirred for 30 minutes at room temperature. The solvents were evaporated under reduced pressure to leave a solid that was triturated with Et2O (3×10 mL) and then dried to give the title compound (75 mg, 40%) as an off-white solid.
(Illustrated with reference to Example 93)
Triphenylphosphine (16.0 g, 60.8 mmol) was added in portions over 15 minutes to a stirred solution of 4-formylbenzonitrile (2.0 g, 15.2 mmol) and carbon tetrabromide (10.1 g, 30.4 mmol) in DCM (50 mL) at 0° C. under a nitrogen atmosphere. The resulting brown coloured solution was stirred at 0° C. for 2 hours then diluted with EtOAc (100 mL) and poured into water (100 mL). After filtering through a pad of celite the separated aqueous phase was extracted with EtOAc (3×200 mL). The combined organic extracts were washed with brine (2×10 mL), dried (Na2SO4) and evaporated under reduced pressure to leave a residue which was purified by column chromatography on silica gel (60-120 mesh) using 4% EtOAc/hexanes as the eluent to give the title compound (3.5 g, 81%) as a white solid.
A stirred solution of 4-chlorobenzaldehyde (3.0 g, 16.1 mmol) and p-toluenesulfonyl hydrazide (2.37 g, 16.9 mmol) in MeOH (20 mL) was heated to 60° C. for two hours. The solution was allowed to cool to room temperature and then the solvents were evaporated under reduced pressure. The resulting solid was recrystallised from MeOH/H2O to give the title compound (3.5 g, 71%) as a white solid.
A stirred solution of N-[(E)-(4-chlorophenyl)methyleneamino]-4-methyl-benzenesulfonamide (2.0 g, 6.5 mmol), 4-(2,2-dibromovinyl)benzonitrile (1.85 g, 6.5 mmol) and NaOH (0.78 g, 19.5 mmol) in 1,4-dioxane (60 mL) was heated to 70° C. for 17 hours. The cooled reaction mixture was partitioned between saturated potassium bisulfate solution (100 mL) and EtOAc (50 mL). The separated aqueous phase was extracted with EtOAc (3×50 mL) then the combined organic extracts were washed with brine (2×25 mL), dried (Na2SO4) and evaporated under reduced pressure. The residue was purified by column chromatography on silica gel (60-120 mesh) using 7% EtOAc/hexanes as the eluent to give the title compound (0.5 g, 22%) as an off-white solid.
(Boc)2O was added to a stirred solution of 4-[4-bromo-3-(4-chlorophenyl)-1H-pyrazol-5-yl]benzonitrile (0.50 g, 1.4 mmol) and triethylamine (0.3 mL, 2.1 mmol) in THF (5 mL) under a nitrogen atmosphere. The solution was stirred for 30 minutes at room temperature then partitioned between saturated potassium bisulfate solution (20 mL) and EtOAc (30 mL). The separated aqueous phase was extracted with EtOAc (3×30 mL) then the combined organic extracts were washed with brine (2×25 mL), dried (Na2SO4) and evaporated under reduced pressure. The residue was purified by column chromatography on silica gel (60-120 mesh) using 7% EtOAc/hexanes as the eluent to give the title compound (0.45 g, 70%) as an off-white solid.
A stirred mixture of tert-butyl 4-bromo-3-(4-chlorophenyl)-5-(4-cyanophenyl)pyrazole-1-carboxylate (0.45 g, 0.97 mmol), (2-(trifluoromethyl)phenyl)boronic acid (0.28 g, 1.46 mmol), tripotassium phosphate (0.62 g, 2.9 mmol) and tricyclohexylphosphine tetrafluoroborate (43 mg, 0.12 mmol) in 1,4-dioxane (13 mL) was degassed with nitrogen for 20 minutes. Bis(dibenzylideneacetone)palladium(0) (55 mg, 0.097 mmol) was added to the solution and the resulting mixture heated to 90° C. for 36 hours under a nitrogen atmosphere. The cooled reaction mixture was partitioned between water (20 mL) and EtOAc (30 mL). The separated aqueous phase was extracted with EtOAc (3×30 mL) then the combined organic extracts were washed with brine (2×25 mL), dried (Na2SO4) and evaporated under reduced pressure. The residue was purified by column chromatography on silica gel (60-120 mesh) using 12% EtOAc/hexanes as the eluent to give the title compound (0.16 g, 39%) as an off-white solid.
A mixture of 4-[3-(4-chlorophenyl)-4-[2-(trifluoromethyl)phenyl]-1H-pyrazol-5-yl]benzonitrile (0.16 g, 0.38 mmol) and sodium hydroxide (0.15 g, 3.78 mmol) in methanol (1.6 mL) and water (0.7 mL) was stirred at 90° C. for 18 hours. The cooled reaction mixture was partitioned between saturated potassium bisulfate solution (10 mL) and EtOAc (10 mL). The separated aqueous phase was extracted with EtOAc (3×10 mL) then the combined organic extracts were washed with brine (2×10 mL), dried (Na2SO4) and evaporated under reduced pressure to give the title compound (0.14 g, 84%) as an off-white solid.
HATU (0.17 g, 0.44 mmol) was added to a stirred solution of 4-[3-(4-chlorophenyl)-4-[2-(trifluoromethyl)phenyl]-1H-pyrazol-5-yl]benzoic acid (0.13 g, 0.29 mmol) in DMF (1.3 mL) at 0° C. under a nitrogen atmosphere. After stirring for 30 minutes, DIPEA (0.15 mL, 0.88 mmol) and N′,N′-dimethylethane-1,2-diamine (31 mg, 0.35 mmol) were added and stirring continued for 30 minutes. The mixture was diluted with water (20 mL) and extracted with EtOAc (3×50 mL). The combined organic extracts were washed with brine (20 mL), dried (Na2SO4) and evaporated under reduced pressure to leave a residue which was purified by column chromatography on silica gel (60-120 mesh) using 4% MeOH/CHCl3 as the eluent. The resulting solid was dissolved in THF (2 mL) and 4N HCl solution in dioxane (0.1 mL) was added and the mixture stirred for 30 minutes at room temperature. The solvents were evaporated under reduced pressure to leave a solid that was triturated with n-pentane (3×10 mL) and then dried to give the title compound (33 mg, 25%) as an off-white solid.
(Illustrated with reference to Example 90)
A solution of 4-nitrophenylchloroformate (0.16 g, 0.8 mmol) in DCM (5 mL) was added dropwise to a stirred solution of 4-[5-(4-chlorophenyl)-1-[2-(trifluoromethyl)phenyl]pyrrol-2-yl]aniline (0.3 g, 0.72 mmol) (prepared using Method D) and pyridine (63 mg, 0.8 mmol) in DCM (10 mL) at 0° C. under a nitrogen atmosphere. The mixture was stirred at 0° C. for 2 hours then DIPEA (0.18 g, 1.44 mmol) and N,N′-dimethylethelenediamine (63 mg, 0.72 mmol) were added and the mixture allowed to warm to room temperature. Stirring was continued for a further 2 hours then the solvents were evaporated under reduced pressure to leave a residue which was purified by preparative HPLC using (A) 0.1% HCl in water and (B) 100% acetonitrile as mobile phase, using Denali C18 (250×25 mm) 5 um column with the flow rate of 25.0 mL/min and with the following gradient:
The title compound (0.07 g, 17%) was obtained as a white solid.
(Illustrated with reference to Example 92)
Sodium hydroxide (4.4 g, 110 mmol) was added in portions over 10 minutes to a stirred solution of 4-chlorobenzaldehyde (10 g, 71.1 mmol) and hydroxylamine hydrochloride (10 g, 144 mmol) in EtOH (50 mL) and water (50 mL) and the resulting mixture stirred at room temperature for 18 hours. The solution was neutralized with 2N HCl solution and extracted with EtOAc (3×100 mL). The combined organic extracts were washed with brine (50 mL), dried (Na2SO4) and evaporated under reduced pressure to give the title compound (10.0 g, 91%) as a white solid.
N-Chlorosuccinimide (1.73 g, 12.9 mmol) was added in three portions over 15 minutes to a stirred solution of (1E)-4-chlorobenzaldehyde oxime (2.0 g, 12.9 mmol) in DMF (10 mL) at 0° C. under a nitrogen atmosphere. The solution was allowed to warm to room temperature and stirring continued for 18 hours before partitioning between water (100 mL) and EtOAc (50 mL). The separated aqueous phase was extracted with EtOAc (3×50 mL) then the combined organic extracts were washed with brine (2×25 mL), dried (Na2SO4) and evaporated under reduced pressure to give the title compound (0.16 g, 39%) as a beige solid.
A mixture of (1Z)-4-chloro-N-hydroxy-benzimidoyl chloride (1.75 g, 9.2 mmol), methyl 4-ethynylbenzoate (1.47 g, 9.2 mmol) and Et3N (1.4 mL, 10.1 mmol) in Et2O (25 mL) was stirred at room temperature under a nitrogen atmosphere for 18 hours. The reaction mixture was partitioned between water (20 mL) and EtOAc (30 mL). The separated aqueous phase was extracted with EtOAc (3×30 mL) then the combined organic extracts were washed with brine (2×25 mL), dried (Na2SO4) and evaporated under reduced pressure. The residue was purified by column chromatography on silica gel (60-120 mesh) using 85% EtOAc/hexanes as the eluent to give the title compound (1.55 g, 54%) as an off-white solid.
N-Bromosuccinimide (1.02 g, 5.7 mmol) was added to a stirred solution of methyl 4-[3-(4-chlorophenyl)isoxazol-5-yl]benzoate (1.50 g, 4.7 mmol) in glacial acetic acid (10 mL) and the resulting mixture heated to 110° C. for 3 hours. The cooled reaction mixture was diluted with water (100 mL) and the resulting solid collected by filtration. The obtained solid was further purified by column chromatography on silica gel (60-120 mesh) using 4% EtOAc/hexanes as the eluent to give the title compound (0.84 g, 45%) as a yellow solid.
A stirred mixture of methyl 4-[4-bromo-3-(4-chlorophenyl)isoxazol-5-yl]benzoate (0.80 g, 2.0 mmol), (2-(trifluoromethyl)phenyl)boronic acid (1.92 g, 10.1 mmol), tripotassium phosphate (1.29 g, 6.0 mmol) and tricyclohexylphosphine tetrafluoroborate (75 mg, 0.20 mmol) in 1,4-dioxane (30 mL) was degassed with nitrogen for 30 minutes at room temperature. Bis(dibenzylideneacetone)palladium(0) (60 mg, 0.10 mmol) was added to the solution and the resulting mixture heated to 110° C. for 18 hours under a nitrogen atmosphere. The cooled reaction mixture was partitioned between water (50 mL) and EtOAc (50 mL). The separated aqueous phase was extracted with EtOAc (4×50 mL) then the combined organic extracts were washed with brine (2×25 mL), dried (Na2SO4) and evaporated under reduced pressure. The residue was purified by column chromatography on silica gel (60-120 mesh) using 5% EtOAc/hexanes as the eluent to give the title compound (0.18 g, 19%) as an off-white solid.
A stirred solution of methyl 4-[3-(4-chlorophenyl)-4-[2-(trifluoromethyl)phenyl]isoxazol-5-yl]benzoate (0.17 g, 0.40 mmol) and lithium hydroxide monohydrate (67 mg, 0.16 mmol) in THF (2 mL) and water (2 mL) was heated at 90° C. for 16 hours. The cooled reaction mixture was partitioned between saturated potassium bisulfate solution (20 mL) and EtOAc (30 mL). The separated aqueous phase was extracted with EtOAc (3×30 mL) then the combined organic extracts were washed with brine (2×25 mL), dried (Na2SO4) and evaporated under reduced pressure to give the title compound (0.16 g, 98%) as an off-white solid.
HATU (0.21 g, 0.54 mmol) was added to a stirred solution of 4-[3-(4-chlorophenyl)-4-[2-(trifluoromethyl)phenyl]isoxazol-5-yl]benzoic acid (0.16 g, 0.36 mmol) in DMF (2 mL) at 0° C. under a nitrogen atmosphere. After stirring for 30 minutes, DIPEA (0.2 mL, 1.01 mmol) and N′,N′-dimethylethane-1,2-diamine (38 mg, 0.43 mmol) were added and stirring continued for 2 hours. The mixture was diluted with water (50 mL) and extracted with EtOAc (3×100 mL). The combined organic extracts were washed with brine (50 mL), dried (Na2SO4) and evaporated under reduced pressure to leave a residue which was purified by column chromatography on silica gel (60-120 mesh) using 4% MeOH/CHCl3 as the eluent. The resulting solid was dissolved in THF (2 mL) and 4N HCl solution in dioxane (0.1 mL) was added and the mixture stirred for 30 minutes at room temperature. The solvents were evaporated under reduced pressure to leave a solid that was triturated with n-pentane (3×10 mL) and then dried to give the title compound (35 mg, 18%) as a white solid.
Biological Activity
Assay to Measure the Effects of Compounds of the Invention on HCT116 Colorectal Cancer Cell Viability
The following protocol was used to measure the effects of compounds of the invention on HCT116 cell viability.
1. HCT116 cells were grown in RPM11640 media supplemented with Glutamax and 10% FBS in a 37° C./5% CO2 incubator.
2. Growing culture of HCT116 cells were trypsinised, counted and diluted to give 10,000 cells/mL in an appropriate volume, allowing at least 6 mL of cells per plate.
3. 200 μL of PBS were added to all the outer wells of a flat-bottomed (8×12) 96-well TC plate. 100 μL of media were added only to wells in column 11 of the plates (these wells provided a blank for the cell titre blue assay). Two compounds were assayed on each plate.
4. 100 ul of 10,000 cells/mL HCT116s were plated in rows B-G of each plate.
5. The cells were incubated (37° C. 5% CO2) for 24 hours before treating with compounds.
6. An 8 mM compound stock in DMSO was prepared for all compounds to be tested. 2.5 μL of the compound stock was added to 1000 μL growth medium in a 96-well deep well block and serial dilutions were prepared across the plate by transferring 500 μL into wells containing 500 μL growth medium+0.25% DMSO to give eight concentrations of compound (this ensured a constant amount of DMSO at all concentrations of compound). When making up growth medium+DMSO, an amount of 5 ml was allowed per compound to be diluted.
7. 3 rows of cells were treated with 100 μL/well from each row on the dilution plate so that each cell plate is treated with a single compound. This gave a final volume in all wells of 200 μL and a titration of compound from a final concentration of 10 uM down to 78 nM.
8. The cells were incubated (37° C. 5% CO2) for 72 hours.
9. 5 ul cell titre blue reagent (Promega) were added to all wells except the edge wells (which contain PBS only) and incubated (37° C. 5% CO2) for 2.5-3 hours.
10. Fluorescence was measured on a suitable plate reader using a 530-570 nm filter set for excitation and a 580-620 nm filter set for fluorescence emission.
11. Data were analysed using an appropriate graphing package (such as GraphPad Prism). Data were expressed as the concentration of compound causing a 50% inhibition of cell viability or GI50.
From the results obtained by following the above protocol, the GI50 values against the HCT116 cell line of each of the compounds of the Examples were determined as shown in Table 4.
Assay to Measure the Effects of Compounds of the Invention on Arresting Cells in Mitosis
Inhibiting the ability of PLK1 to bind to its phosphopeptide binding partners through the PBD causes cells to arrest in mitosis. Experimentally, this is measured by assessing the number of cells which are in mitosis at a certain time after treatment with a PLK1-PBD inhibitor by immunofluorescent detection of phosphorylated Histone H3 (pH3), a marker which is only present in mitotic cells. PLK1-PBD inhibitors are expected to cause a dose-dependent increase in pH3-positive cells, which is reported as Mitotic Index (MI)—the percentage of cells which, at a given time, are positive for this mitotic mark. The following protocol has been used to measure MI:
From the results obtained by following the above protocol, the EC50 values and the percentage of cells in mitosis against the HeLa cell line was obtained for each of the compounds of the Examples were determined as shown in Table 5.
In a separate experiment, the compound of Example 33 was tested in the mitotic arrest assay and was found to have an EC50 in the assay of 0.061±0.01 μM.
Assay to Measure the Effects of Compounds of the Invention on Wild-Type Versus KRAS HeLa Cell Viability
Identifying synthetic lethal interactions between targeted small molecule therapies and characterised oncogenic mutations is a goal of modern oncology drug discovery efforts. To this end, PLK1-PBD inhibitors were tested on HeLa cells engineered to inducibly express wild-type or oncogenic KrasG12V transgenes using the FLP-in/T-Rex system (Invitrogen). Cells were plated, and then treated with or without Doxycycline to induce transgene expression, and then treated with serially-diluted PBD inhibitors. After 72 hours of incubation, cell viability was assessed using the Cell Titre Blue reagent (Promega) and a BMG Pherastar plate reader. The effect of PBD inhibition on cell viability with either wild-type or oncogenic G12V KRAS was assessed using the graphing/curve-fitting packages in GraphPad Prism.
From the results obtained by following the above protocol, the GI50 values against the wild-type and KRAS G12V HeLa cell line of each of the compounds of the Examples were determined as shown in Table 6.
Assay to Measure the Effects of Compounds of the Invention on Glioblastoma Cancer Cell Viability
The compound of Example 33 was tested for inhibitory activity against the glioblastoma cell lines in Table 7 below.
Kinase Selectivity Assay
Compounds of the invention bind to the PBD domain of PLK1 but not to the catalytic domain and should exhibit good selectivity over other kinases. The compound of Example 33 was tested for off-target activity against a panel of fifty five kinases bearing functional or structural similarity to PLK1 at a concentration of 5 μM using the DiscoverX KinomeScreen assay. The results are shown in Table 8 below.
The results demonstrate a lack of activity against the other kinases and hence the specificity of the compound of Example 33 for PLK1-PBD over other kinases.
Determination of Oral Bioavailability
The oral bioavailability of the compound of Example 33 was determined in mice and compared with the bioavailability following intravenous injection using the following protocol. Male CD-1 mice were dosed with the compound of Example 33, either by i.v. administration (2 mg/kg) or by peroral administration (10 mg/kg) and samples were taken for analysis at 2, 5, 10, 15, 30 min, 1, 2, 4, 8, 16, 24 and 40 hrs (for i.v.) and at 5, 15, 30 min, 1, 2, 4, 8, 16, 24, 48 and 72 hrs. The compound of Example 33 was formulated in 5% DMSO/95% hydroxypropyl-beta-cyclodextrin (20% w/v aqueous) for i.v. and 10% DMSO/90% hydroxypropyl-beta-cyclodextrin (20% w/v aqueous) for p.o. N=3 mice per time point with 15 ul plasma per aliquot. Quantitative bioanalysis was performed and the results are shown in
The results demonstrate that the compound of Example 33 is highly absorbed following oral dosing in mice.
Measurements of other pharmacokinetic parameters of the compound of Example 33 demonstrated that it has a kinetic solubility of 32 μM, exhibits negligible (>25 μM) binding to the hERG ion channel, and is stable in human hepatocytes (CLint 10 μl/min/million cells). It also demonstrates negligible cytochrome P450 inhibition ((1A, 2D6, 2C9, 2C19, 3A4) all >10 uM).
Determination of Brain Exposure Following Oral Dosing in Mice
An experiment was carried out on the compound of Example 33 to determine the extent of its brain penetration following oral dosing in mice. The following protocol was used. 15 male CD-1 mice (n=3/time point) were dosed per orally with the compound of Example 33 (10 mg/kg; dose concentration 1 mg/ml; dose volume 10 mL/kg). The compound of Example 33 was formulated in 10% DMSO/90% hydroxypropyl-β-cyclodextrin (20% w/v aqueous). Animals were housed in pre-assigned housing cages until sampling. Appropriate samples were taken at 1, 4, 8 & 24 hour time points and stored immediately at −20° C. Homogenisation and protein precipitation with acetonitrile was carried out for plasma and brain. Analysis was carried out with tandem mass spectrometry using electrospray ionisation. The results of the experiment are shown in
In Vivo Anti-Cancer Activity in Mice Bearing HCT116 Tumours
Mice bearing HCT116 xenograft tumours were give oral dosages of either 50 mg/kg or 200 m/kg on days 1, 3, 7, 10 and 13 and the tumour volumes measured at days 1, 3, 5, 8, 10, 12 and 15. Tumour volumes in a control group of tumour-bearing mice, who had received vehicle only at the same time points were also measured. The results, shown in
In a separate experiment, eight mice with established tumours were treated with the compound of Example 33 and euthanised 24 hours after administration of a single dose. The tumours were removed and analysed by Western blotting to reveal a clear induction of phospho-histone H3, indicating a block in mitosis.
Drug Resistance Studies
The compound 4-[[(7R)-8-cyclopentyl-7-ethyl-5,6,7,8-tetrahydro-5-methyl-6-oxo-2-pteridinyl]amino]-3-methoxy-N-(1-methyl-4-piperidinyl)benzamide, known by the code name B12536, is a PLK1 inhibitor which inhibits the catalytic activity of PLK1 and shows potent anticancer activity. B12536 has progressed into clinical studies in humans with locally advanced or metastatic cancers (Steegmaier et al., Current Biology, 17, 316-322, 2007).
HCT116 cells (a mutant KRAS G-13D expressing cell line) were treated with five times the half maximal growth inhibiting amount of either B12536 or the compound of Example 33. After twenty two days, it was observed that drug-resistant colonies were formed with B12536 but not with the compound of Example 33. This result suggests that inhibiting the C-terminal polo box domain of PLK1, rather than the N-terminal catalytic domain, is less likely to result in the development of drug resistant strains of the cancer.
Pharmaceutical Formulations
(i) Tablet Formulation
A tablet composition containing a compound of the formula (1) is prepared by mixing 50 mg of the compound with 197 mg of lactose (BP) as diluent, and 3 mg magnesium stearate as a lubricant and compressing to form a tablet in known manner.
(ii) Capsule Formulation
A capsule formulation is prepared by mixing 100 mg of a compound of the formula (1) with 100 mg lactose and filling the resulting mixture into standard opaque hard gelatin capsules.
(iii) Injectable Formulation I
A parenteral composition for administration by injection can be prepared by dissolving a compound of the formula (1) (e.g. in a salt form) in water containing 10% propylene glycol to give a concentration of active compound of 1.5% by weight. The solution is then sterilised by filtration, filled into an ampoule and sealed.
(iv) Injectable Formulation II
A parenteral composition for injection is prepared by dissolving in water a compound of the formula (1) (e.g. in salt form) (2 mg/ml) and mannitol (50 mg/ml), sterile filtering the solution and filling into sealable 1 ml vials or ampoules.
v) Injectable formulation III
A formulation for i.v. delivery by injection or infusion can be prepared by dissolving the compound of formula (1) (e.g. in a salt form) in water at 20 mg/ml. The vial is then sealed and sterilised by autoclaving.
vi) Injectable Formulation IV
A formulation for i.v. delivery by injection or infusion can be prepared by dissolving the compound of formula (1) (e.g. in a salt form) in water containing a buffer (e.g. 0.2 M acetate pH 4.6) at 20 mg/ml. The vial is then sealed and sterilised by autoclaving.
(vii) Subcutaneous Injection Formulation
A composition for sub-cutaneous administration is prepared by mixing a compound of the formula (1) with pharmaceutical grade corn oil to give a concentration of 5 mg/ml. The composition is sterilised and filled into a suitable container.
viii) Lyophilised Formulation
Aliquots of formulated compound of formula (1) are put into 50 ml vials and lyophilized. During lyophilisation, the compositions are frozen using a one-step freezing protocol at (−45° C.). The temperature is raised to −10° C. for annealing, then lowered to freezing at −45° C., followed by primary drying at +25° C. for
| Number | Date | Country | Kind |
|---|---|---|---|
| 1706806.5 | Apr 2017 | GB | national |
This application is a continuation of U.S. application Ser. No. 16/606,934 filed Oct. 21, 2019 and published as US 2020-0247796 A1 on Aug. 6, 2020, which is a § 371 national phase entry of International Patent Application No. PCT/EP2018/060984, filed Apr. 27, 2018 and published as WO/2018/197714 on Nov. 1, 2018, which claims priority to GB Patent Application No. 1706806.5 filed Apr. 28, 2017. The entire contents of WO/2018/197714 and US 2020-0247796 A1 are hereby incorporated herein by reference.
| Number | Date | Country | |
|---|---|---|---|
| Parent | 16606934 | Oct 2019 | US |
| Child | 17453959 | US |
