Patent Application
20240002377
The present disclosure claims the priority to: Chinese Patent Application No. CN202011437580.2 filed on Dec. 7, 2020.
The present disclosure relates to a pyrrolopyridine compound, in particular to a compound of formula (P) or a pharmaceutically acceptable salt thereof.
The pyrrolopyridine compounds of the present invention are a new class of protein kinase inhibitors with various therapeutic applications, which can be used to treat the proliferation, inflammation, autoimmune and other related disorders caused by protein kinase.
Kinases are enzymes that catalyze the transfer of phosphate groups from phosphate donors (such as ATP) to specific substrates. Protein kinases are a large subset of kinases that play key roles in regulating various cell signals and processes, among which one is called BTK.
BTK is a member of the TEC family of cytoplasmic tyrosine kinases (TFKs). TFKs consists of five members, in addition to BTK, namely ITK, TEC, BMX and TXK. TFKs have an evolutionary history of over 600 million years and belong to a very ancient kinase family that mainly functions in the hematopoietic system.
BTK is mainly responsible for the transmission and amplification of various intracellular and extracellular signals in B lymphocytes, and is essential for normal B cell maturation. Inactivation of BTK function in XLA patients results in a deficiency of peripheral B cell and immunoglobulin. Signaling receptors upstream of BTK include growth factor and cytokine receptors, G protein-coupled receptors such as chemokine receptors, antigen receptors (especially B cell receptors [BCR]), and integrins, etc. BTK in turn activates many major downstream signaling pathways, including phosphoinositide-3 kinase (PI3K)-AKT pathway, phospholipase-C (PLC), protein kinase C, and nuclear factor κ B (NF-κB), etc. The role of BTK in BCR signaling and cell migration is well established, and these functions also appear to be major targets of BTK inhibitor. Increased BTK activity has been detected in blood cancer cells such as B-cell chronic lymphocytic leukemia (CLL) and mantle cell lymphoma (MCL), etc. Abnormal activity of BTK function frequently leads to B-cell malignancies or autoimmune diseases, making it a popular target for research and development.
Currently, BTK inhibitors approved by FDA for marketing include ibrutinib and acalabrutinib (acalanib). These two irreversible covalent inhibitors can covalently bind with protein C481, thereby effectively inhibiting the activity of BTK. Clinical studies have found that patients can develop resistance mutations after administration of ibrutinib and acalabrutinib (acalanib), including C481S, C481Y, C481R, C481F. For drug resistance caused by protein cysteine C481 mutation, we have designed and synthesized a series of irreversible BTK inhibitors of pyrrolopyridine.
The present disclosure provides a compound represented by formula (P) or a pharmaceutically acceptable salt thereof,
wherein,
The present disclosure provides a compound represented by formula (P) or a pharmaceutically acceptable salt thereof,
In some embodiments of the present disclosure, the above-mentioned compound or pharmaceutically acceptable salt thereof is
Wherein R1, R3, R4, R5 and in are as defined herein.
The carbon atoms with “*” are chiral carbon atoms and exist in the form of (R) or (S) single enantiomer or enriched in one enantiomer.
In some embodiments of the present disclosure, the above-mentioned R1 is selected from CN, CH3, CH2CH3 and CH (CH3)2, wherein the CH3, CH2CH3 and CH (CH3)2 are optionally substituted by 1, 2 or 3 Ra. and other variables are as defined herein. In some embodiments of the present disclosure, the above-mentioned R1 is selected from CN and CH2OH, and other variables are as defined herein.
In some embodiments of the present disclosure, the above-mentioned R3 is Cl, and other variables are as defined herein.
In some embodiments of the present disclosure, the above-mentioned R4 is selected from H and F, and other variables are as defined herein.
In some embodiments of the present disclosure, the structural unit
is
and other variables are as defined herein. In some embodiments of the present disclosure, The structural unit
is selected from
and other variables as defined herein.
In some embodiments of the present disclosure, the above-mentioned compound or pharmaceutically acceptable salt thereof is
The present disclosure provides a compound shown in formula (I) or a pharmaceutically acceptable salt thereof,
In some embodiments of the present disclosure, the above-mentioned compound or pharmaceutically acceptable salt thereof is selected from,
Wherein, R1, R2, R3, R4, R5 and in are as defined in the present invention herein. The carbon atoms with “*” are chiral carbon atoms, and exist in the form of (R) or (S) single enantiomer or enriched in one enantiomer.
In some embodiments of the present disclosure, R1 is selected from CN, CH3, CH2CH3 and CH(CH3)2, wherein the CH3, CH2CH3 and CH(CH3)2 are optionally substituted by 1, 2 or 3 Ra and other variables are as defined herein.
In some embodiments of the present disclosure, R1 is selected from CN and CH2OH, and other variables are as defined herein.
In some embodiments of the present disclosure, R2 is selected from H, OCH3, OCH2CH3 and OCH(CH3)2, and other variables are as defined herein.
In some embodiments of the present disclosure, R3 is Cl, and other variables are as defined herein.
In some embodiments of the present disclosure, R4 is selected from H and F, and other variables are as defined herein.
In some embodiments of the present disclosure, the structural unit
is selected from
other variables are as defined herein.
In some embodiments of the present disclosure, the compound or pharmaceutically acceptable salt thereof is
The present disclosure also includes some embodiments that are obtained by combining any of the above-mentioned variables.
The present disclosure also provides the compound represented in the following formula or its pharmaceutically acceptable salt.
In some embodiments of the present disclosure, the compound or pharmaceutically acceptable salt thereof is
The present disclosure also provides the use of the above-mentioned compound or a pharmaceutically acceptable salt thereof in the manufacture of a medicament related to tumor.
The present disclosure also provides the use of the above-mentioned compound or a pharmaceutically acceptable salt thereof in the manufacture of a medicament related to hematomas.
The present disclosure also provides the following test methods:
Culture medium, trypsin and 1×PBS used in the cell passage process were preheated in a 37° C. water bath. The supernatant was removed.
1 mL trypsin was added to rinse, and then the rinse was removed. 1 mL of trypsin was added and digested at 37° C. until the cells fell off. 10 mL culture solution was added and mixed well. The mixture was centrifuged at 1000 rpm for 5 min, and the cells were resuspended in 10 mL of culture medium. 0.7 mL of cell suspension was pipetted into a counting cup, and counted on ViCell XR to obtain a cell density is 0.327 million/mL, respectively. 1.17 mL of cell suspension and culture medium were weighed, respectively, to dilute the cell suspension. 100 μL phosphate buffer solution was added to the peripheral wells of the 384-well microplate, and 40 μL of cell suspension was added to other wells, respectively, and then the cell plate was cultured in an incubator.
Assay Results
Assay example purpose: To assay the pharmacokinetics of compounds in CD-1 mice.
Assay method: The compounds to be assayed were mixed with vehicle. The mixture was vortexed and sonicated to obtain a clear solution. The candidate compounds solution was administrated intravenously to male CD-1 mice aged 7 to 10 weeks at a dose of about 0.2 mg/kg, or the candidate compound solution was given intragastrically at a dose of 1-3 mg/kg. The whole blood was collected for a certain period of time to prepare the plasma. The drug concentration was analyzed by LC-MS/MS. The pharmacokinetic parameters were calculated by Phoenix WinNonlin software (Pharsight Company, USA).
Xenograft Tumor Model of TMD8 in SCID Mouse:
Assay Method:
A tumor model of subcutaneously transplanted human diffuse large B lymphoma in mice was established. Tumor cells in logarithmic growth phase were collected, counted, and then resuspended in RPMI1640. The cell suspension was adjusted to a concentration of 4×107/mL, and mixed well with Matrigel (1:1). Tumor cells were inoculated subcutaneously on the right back of the mouse, 4×106 cells/mouse. When the animal tumor reached about 100-300 mm3, the tumor-bearing mice were randomly divided into groups according to the size of the tumor volume, with 6 mice in each group. On the day of the assay, the animals were administered the corresponding drugs according to the corresponding groups. The first group was set as a negative control group, which was administered 10% NMP/60% PEG400/30% H2O by gavage alone. The second group was set as a positive control group, which was given the assay compound at a dose of 30 mg/kg, once a day, for a total of 15 days.
During the assay, animal weight and tumor size were measured 3 times a week, and clinical symptoms of animals were observed and recorded every day. Each dosing was referenced to the most recent animal weight. For tumor measurement, length (a) and width (b) were measured with digital vernier calipers, and the calculation formula for tumor volume (TV) was: TV=a×b2/2.
Unless otherwise specified, the following terms and phrases used herein are intended to have the following meanings. A specific term or phrase should not be considered indefinite or unclear in the absence of a particular definition, but should be understood in the conventional sense. When a trade name appears herein, it is intended to refer to its corresponding commodity or active ingredient thereof.
The term “pharmaceutically acceptable” is used herein in terms of those compounds, materials, compositions, and/or dosage forms, which are suitable for use in contact with human and animal tissues within the scope of reliable medical judgment, with no excessive toxicity, irritation, allergic reaction or other problems or complications, commensurate with a reasonable benefit/risk ratio.
The term “pharmaceutically acceptable salt” means a salt of compounds disclosed herein that is prepared by reacting the compound having a specific substituent disclosed herein with a relatively non-toxic acid or base. When compounds disclosed herein contain a relatively acidic functional group, a base addition salt can be obtained by bringing the neutral form of the compound into contact with a sufficient amount of base in a pure solution or a suitable inert solvent. The pharmaceutically acceptable base addition salt includes a salt of sodium, potassium, calcium, ammonium, organic amine or magnesium or similar salts. When compounds disclosed herein contain a relatively basic functional group, an acid addition salt can be obtained by bringing the neutral form of the compound into contact with a sufficient amount of acid in a pure solution or a suitable inert solvent. Examples of the pharmaceutically acceptable acid addition salt include an inorganic acid salt, wherein the inorganic acid includes, for example, hydrochloric acid, hydrobromic acid, nitric acid, carbonic acid, bicarbonate, phosphoric acid, monohydrogen phosphate, dihydrogen phosphate, sulfuric acid, hydrogen sulfate, hydroiodic acid, phosphorous acid, and the like; and an organic acid salt, wherein the organic acid includes, for example, acetic acid, propionic acid, isobutyric acid, maleic acid, malonic acid, benzoic acid, succinic acid, suberic acid, fumaric acid, lactic acid, mandelic acid, phthalic acid, benzenesulfonic acid, p-toluenesulfonic acid, citric acid, tartaric acid, and methanesulfonic acid, and the like; and an salt of amino acid (such as arginine and the like), and a salt of an organic acid such as glucuronic acid and the like. Certain specific compounds disclosed herein contain both basic and acidic functional groups and can be converted to any base or acid addition salt.
The pharmaceutically acceptable salt disclosed herein can be prepared from the parent compound that contains an acidic or basic moiety by conventional chemical methods. Generally, such salt can be prepared by reacting the free acid or base form of the compound with a stoichiometric amount of an appropriate base or acid in water or an organic solvent or a mixture thereof.
Unless otherwise specified, the term “isomer” is intended to include geometric isomers, cis- or trans-isomers, stereoisomers, enantiomers, optical isomers, diastereomers, and tautomers.
Compounds disclosed herein may be present in a specific geometric or stereoisomeric form. The present disclosure contemplates all such compounds, including cis and trans isomers, (−)- and (+)-enantiomers, (R)- and (S)-enantiomers, diastereoisomer, (D)-isomer, (L)-isomer, and a racemic mixture and other mixtures, for example, a mixture enriched in enantiomer or diastereoisomer, all of which are encompassed within the scope disclosed herein. The substituent such as alkyl may have an additional asymmetric carbon atom. All these isomers and mixtures thereof are encompassed within the scope disclosed herein.
Unless otherwise specified, the term “enantiomer” or “optical isomer” means stereoisomers that are in a mirrored relationship with each other.
Unless otherwise specified, the term “cis-trans isomer” or “geometric isomer” is produced by the inability of a double bond or a single bond between ring-forming carbon atoms to rotate freely.
Unless otherwise specified, the term “diastereomer” means a stereoisomer in which two or more chiral centers of are contained in a molecule and is in a non-mirrored relationship between molecules.
Unless otherwise specified, “(+)” means dextroisomer, “(−)” means levoisomer, and “(±)” means racemate.
Unless otherwise specified, the wedge solid bond () and a wedged dashed bond (
) indicate the absolute configuration of a stereocenter; a straight solid bond (
) and a straight dashed bond (
) indicate the relative configuration of a stereocenter; a wavy line (
) indicates a wedged solid bond (
) or a wedged dashed bond (
), or a wavy line (
) indicates a straight solid bond (
) and a straight dashed bond (
).
Compounds disclosed herein may be present in a particular form. Unless otherwise specified, the terms “tautomer” or “tautomeric form” means that different functional groups are in dynamic equilibrium at room temperature and can be rapidly converted into each other. If tautomers are possible (as in solution), a chemical equilibrium of tautomers can be achieved. For example, proton tautomers (also known as prototropic tautomers) include interconversions by proton transfer, such as keto-enol isomerization and imine-enamine isomerization. Valence tautomers include interconversions by recombination of some bonding electrons. A specific example of keto-enol tautomerization is interconversion between two tautomers pentane-2, 4-dione and 4-hydroxypent-3-en-2-one.
Unless otherwise specified, the term “enriched in one isomer”, “isomer enriched”, “enriched in one enantiomer” or “enantiomeric enriched” means that the content of one isomer or enantiomer is less than 100%, and the content of the isomer or enantiomer is 60% or more, or 70% or more, or 80% or more, or 90% or more, or 95% or more, or 96% or more, or 97% or more, 98% or more, 99% or more, 99.5% or more, 99.6% or more, 99.7% or more, 99.8% or more, or 99.9% or more.
Unless otherwise specified, the term “isomer excess” or “enantiomeric excess” means the difference between the relative percentages of two isomers or two enantiomers. For example, if one isomer or enantiomer is present in an amount of 90% and the other isomer or enantiomer is present in an amount of 10%, the isomer or enantiomeric excess (ee value) is 80%.
Optically active (R)- and (S)-isomer, or D and L isomer can be prepared using chiral synthesis or chiral reagents or other conventional techniques. If one kind of enantiomer of certain compound disclosed herein is to be obtained, the pure desired enantiomer can be obtained by asymmetric synthesis or derivative action of chiral auxiliary followed by separating the resulting diastereomeric mixture and cleaving the auxiliary group. Alternatively, when the molecule contains a basic functional group (such as amino) or an acidic functional group (such as carboxyl), the compound reacts with an appropriate optically active acid or base to form a salt of the diastereomeric isomer which is then subjected to diastereomeric resolution through the conventional method in the art to afford the pure enantiomer. In addition, the enantiomer and the diastereoisomer are generally isolated through chromatography which uses a chiral stationary phase and optionally combines with a chemical derivative method (for example, carbamate generated from amine).
Compounds disclosed herein may contain an unnatural proportion of atomic isotopes at one or more of the atoms that make up the compounds. For example, a compound may be labeled with a radioisotope such as tritium (3H), iodine-125 (125I) or C-14 (14C). For another example, hydrogen can be replaced by heavy hydrogen to form a deuterated drug. The bond between deuterium and carbon is stronger than that between ordinary hydrogen and carbon. Compared with undeuterated drugs, deuterated drugs have advantages of reduced toxic side effects, increased drug stability, enhanced efficacy, and prolonged biological half-life of drugs. All changes in the isotopic composition of compounds disclosed herein, regardless of radioactivity, are included within the scope of the present disclosure.
Unless otherwise specified, the term “C1-3 alkyl” refers to a linear or branched saturated hydrocarbon group containing 1 to 3 carbon atoms. The C1-3 alkyl comprises C1-2, C2-3 alkyl and the like; It can be monovalent (such as methyl), divalent (such as methylene) or multivalent (such as methylene). Examples of C1-3 alkyl include, but are not limited to, methyl (Me), ethyl (Et), propyl (including n-propyl and isopropyl), and the like.
Unless otherwise specified, the term “C1-3 alkoxy” refers to an alkyl group containing 1 to 3 carbon atoms and attached to the remainder of a molecule through an oxygen atom. The C1-3 alkoxy group includes C1-2, C2-3, C3 and C2 alkoxy, and the like. Examples of C1-3 alkoxy include, but are not limited to, methoxy, ethoxy, propoxy (including n-propoxy and isopropoxy), and the like.
The term “optional” or “optionally” means that the subsequent event or condition may occur but not requisite, that the term includes the instance in which the event or condition occurs and the instance in which the event or condition does not occur.
The term “substituted” means one or more than one hydrogen atom(s) on a specific atom are substituted by a substituent, including deuterium and hydrogen variants, as long as the valence of the specific atom is normal and the substituted compound is stable. When the substituent is oxo (i.e., ═O), it means two hydrogen atoms are substituted. Positions on an aromatic ring cannot be substituted by oxo. The term “optionally substituted” means an atom can be substituted by a substituent or not, unless otherwise specified, the species and number of the substituent may be arbitrary as long as being chemically achievable.
When any variable (such as R) occurs in the constitution or structure of the compound more than once, the definition of the variable at each occurrence is independent. Thus, for example, if a group is substituted by 0 to 2 R, the group can be optionally substituted by up to two R, wherein the definition of R at each occurrence is independent. Moreover, a combination of the substituent and/or the variant thereof is allowed only when the combination results in a stable compound.
Compounds disclosed herein can be prepared by a variety of synthetic methods well known to those skilled in the art, including the following enumerated embodiment, the embodiment formed by the following enumerated embodiment in combination with other chemical synthesis methods, and equivalent replacement well known to those skilled in the art. Alternative embodiments include, but are not limited to the embodiment disclosed herein.
The structures of compounds disclosed herein can be confirmed by conventional methods well known to those skilled in the art. If the present disclosure relates to an absolute configuration of a compound, the absolute configuration can be confirmed by conventional techniques in the art, such as single crystal X-Ray diffraction (SXRD). In the single crystal X-Ray diffraction (SXRD), the diffraction intensity data of the cultivated single crystal is collected using a Bruker D8 venture diffractometer with a light source of CuKα radiation in a scanning mode of ϕ/ω scan; after collecting the relevant data, the crystal structure is further analyzed by the direct method (Shelxs97) to confirm the absolute configuration.
The term “protection group” includes, but is not limited to, “amino protection group”, “hydroxyl protection group” or “sulfhydryl protection group”. The term “amino protective group” refers to the protective group suitable for preventing the side reaction on the amino nitrogen position. Representative amino protection groups include, but are not limited to, formyl; Acyl, such as alkanoyl (for example acetyl, trichloroacetyl or trifluoroacetyl); Alkoxycarbonyl, such as tert-butoxycarbonyl (Boc); Aryl methoxycarbonyl, such as benzyloxycarbonyl (Cbz) and 9-fluorene methoxycarbonyl (Fmoc); Aryl methyl, such as benzyl (Bn), triphenylmethyl (Tr), 1,1-di-(4′-methoxyphenyl) methyl; Methylsilyl, such as trimethylsilyl (TMS) and tert-butyldimethylsilyl (TBS), etc. The term “hydroxyl protection group” refers to the protection group suitable for preventing the hydroxyl from side reaction. Representative hydroxyl protection groups include, but are not limited to, alkyl, such as methyl, ethyl and tertiary butyl; Acyl, for example, alkanoyl (such as acetyl); Aryl methyl, such as benzyl (Bn), p-methoxybenzyl (PMB), 9-fluorenylmethyl (Fm) and diphenylmethyl (diphenylmethyl, DPM); Methylsilyl, such as trimethylsilyl (TMS) and tert-butyldimethylsilyl (TBS), and the like.
Solvents used in the present disclosure are commercially available.
Compounds are named according to general naming principles in the art or by ChemDraw® software, and commercially available compounds are named with their vendor directory names.
The compound of the invention has a strong inhibitory effect on BTKC481S mutation, has an inhibitory effect on tumor, and has good PK properties.
The present disclosure is described in detail below by means of examples. However, it is not intended that these examples have any disadvantageous limitations to the present disclosure. The present disclosure has been described in detail herein, and embodiments are also disclosed herein. It will be apparent to those skilled in the art that various changes and modifications may be made to the embodiments disclosed herein without departing from the spirit and scope disclosed herein.
Route for Synthesis:
Step 1: Synthesis of Compound A2
To dissolve compound A1 (5 g, 14.55 mmol, 1 eq) in dichloromethane (5 mL), zinc bromide (13.11 g, 58.22 mmol, 2.91 mL, 4 eq) was added, and then the mixture was reacted at 20° C. for 36 hours. After completion of the reaction, ammonia water (5 mL) was added into the reaction system, and saturated ammonium chloride aqueous solution (10 mL) was added. The organic phase was separated, and the aqueous phase was extracted with dichloromethane (20 mL*3). The organic phases were combined, dried with anhydrous sodium sulfate, and concentrated to give a crude intermediate A2. LCMS: (ESI) m/z: 244.2 [M+1]+.
Step 2: Synthesis of Compound A3
Dry palladium carbon (0.3 g) was added to methanol (20 mL), and then compound A2 (2.5 g, 10.27 mmol, 1 eq) was added. The mixture was reacted under the condition of hydrogen atmosphere with pressure of 30 psi at 26° C. for 24 hours. The mixture was filtered and concentrated to obtain compound A3. LCMS: (ESI) m/z: 246.2 [M+1]+.
Step 3: Synthesis of Compound A
The compound of 4-chloro-1H-pyrrolo [2,3-B] pyridine-5-carbonitrile (810.41 mg, 4.56 mmol, 0.8 eq) and compound A3 (1.4 g, 5.70 mmol, 1 eq) were dissolved in N-methylpyrrolidone (2 mL), and N, N-diisopropylethylamine (1.84 g, 14.26 mmol, 2.48 mL, 2.5 eq) was added. The mixture was reacted in a microwave reactor at 200° C. for 2 hours. 20 mL of water was poured into the reaction solution. then the mixture was extracted with ethyl acetate (20 mL*4). The organic phase was combined, washed with 30 mL of saturated brine, and dried over anhydrous sodium sulfate to obtain a crude product. The crude product was purified by column chromatography (eluent: petroleum ether:ethyl acetate=30:1) to obtain compound A. LCMS: (ESI) m/z: 387.2 [M+1]+.
Synthesis Route:
Step 1: Synthesis of Compound 001-2
To dissolve 3-fluorophenol (5.30 g, 47.30 mmol, 4.35 mL, 1.5 eq), compound 001-1 (5.00 g, 31.53 mmol, 1 eq) in N, N-dimethylformamide (20 mL), cesium carbonate (15.41 g, 47.30 mmol, 1.5 eq) was added. The mixture was reacted at 80° C. for 3 hours. The reaction solution was filtered, and 30 mL of water was added. Then the mixture was extracted with ethyl acetate (30 mL*4). The organic phase was combined, and washed with 50 mL of saturated brine, dried over anhydrous sodium sulfate, and purified by column chromatography (eluent: petroleum ether:ethyl acetate=10:1) to obtain compound 001-2. 1H NMR (400 MHz, CDCl3) δ=10.40 (s, 1H), 7.95 (d, J=8.8 Hz, 1H), 7.41 (dt, J=6.8, 8.2 Hz, 1H), 7.07-6.96 (m, 3H), 6.93-6.83 (m, 2H).
Step 2: Synthesis of Compound 001-3
Compound 001-2 (129.68 mg, 517.38 μmol, 1 eq) and intermediate A (0.2 g, 517.38 μmol, 1 eq) were added to methanol (5 mL), and then potassium hydroxide (145.15 mg, 2.59 mmol, 5 eq) was added. The mixture was reacted at 20° C. for 72 hours. The reaction solution was concentrated and purified by column chromatography (eluent: dichloromethane:methanol=50:1) to obtain compound 001-3. LCMS: (ESI) m/z: 637.2 [M+1]+.
Step 3: Synthesis of Compound 001-4
Compound 001-3 (0.13 g, 204.01 μmol, 1 eq) was added to dichloromethane (5 mL), and then manganese dioxide (532.09 mg, 6.12 mol, 30 eq) was added. the mixture was reacted at 30° C. for 72 hours. After the completion of reaction, the solution was filtered and concentrated to obtain a crude product. The crude product was purified by column chromatography (eluent: dichloromethane:methanol=20:1) to obtain compound 001-4. LCMS: (ESI) m/z: 657.2 [M+Na]+.
Step 4: Synthesis of Compound 1 Compound 001-4 (0.12 g, 188.32 μmol, 1 eq) was added to tetrahydrofuran (3 mL), and then tetrabutylammonium fluoride (49.24 mg, 188.32 μmol, 1 eq) was added. The mixture was reacted at 20° C. for 12 hours. The reaction solution was concentrated to obtain a crude product. The crude product is separated by preparative HPLC (chromatographic column: Welch Xtimate C18 150*25 mm*5 μm; Mobile phase: [water (10 mM NH4HCO3)-acetonitrile]; Acetonitrile %: 40%-70%, 8 min) to obtain compound 1. LCMS: (ESI) m/z: 521.1 [M+1]+. 1H NMR (400 MHz, DMSO-d6) δ=1H NMR (400 MHz, DMSO-d6) δ=9.65 (br d, J=8.4 Hz, 1H), 8.04 (s, 1H), 7.54-7.44 (m, 3H), 7.24 (d, J=2.0 Hz, 1H), 7.13-6.97 (m, 4H), 4.72-4.68 (m, 1H), 4.25-4.17 (m, 2H), 2.36-2.25 (m, 3H), 2.07-1.93 (m, 1H), 1.82-1.69 (m, 2H), 1.52-1.37 (m, 2H).
Synthesis Route:
Step 1: Synthesis of Compound 002-2
2-fluorophenol (5.30 g, 47.30 mmol, 4.38 mL, 1.5 eq) and compound 001-1 (5 g, 31.53 mmol, 1 eq) were dissolved in N, N-dimethylformamide (20 mL), and then cesium carbonate (15.41 g, 47.30 mmol, 1.5 eq) was added. The mixture was reacted at 80° C. for 3 hours. The reaction solution was filtered, and 30 mL of water was added. The mixture was extracted with ethyl acetate (30 mL*4), washed with 50 mL of saturated brine, dried over anhydrous sodium sulfate, and concentrated to obtain a crude product, The crude product was purified by column chromatography (eluent: petroleum ether:ethyl acetate=10:1) to obtain compound 002-2. 1H NMR (400 MHz, CDCl3) δ=10.39 (s, 1H), 7.93 (d, J=8.5 Hz, 1H), 7.28-7.13 (m, 4H), 7.07-6.81 (m, 2H).
Step 2: Synthesis of Compound 002-3
to dissolve intermediate A (180 mg, 0.467 mmol, 1 eq) in dichloromethane (3 mL), hydrochloric acid/dioxane (4 M, 3 mL) was added. The mixture was reacted at 20° C. for 3 hours, and then 20 mL of water was added. the reaction solution was extracted with dichloromethane (20 mL*3). The organic phase was combined, dried over anhydrous sodium sulfate, filtered, and concentrated to obtain a crude product. The crude product was purified by column chromatography (eluent: dichloromethane:methanol=20:1) to obtain Compound 002-3. LCMS: (ESI) m/z: 273.1 [M+1]+.
Step 3: Synthesis of Compound 002-4
Compound 002-2 (441.84 mg, 1.76 mmol, 1.2 eq) and compound 002-3 (0.4 g, 1.47 mmol, 1 eq) obtained by step 2 were added to methanol (5 mL), and potassium hydroxide (412.08 mg, 7.34 mmol, 5 eq) was added. The mixture was reacted at 30° C. for 24 hours. The reaction solution was concentrated to obtain a crude product. The crude product was purified by column chromatography (eluent: dichloromethane:methanol=50:1) to obtain compound 002-4. LCMS: (ESI) m/z: 523.2 [M+1]+.
Step 4: Synthesis of Compound 2
Compound 002-4 (164.14 mg, 313.87 μmol, 1 eq) was added to dichloromethane (10 mL), and manganese dioxide (818.63 mg, 9.42 mmol, 30 eq) was added. The mixture was reacted at 40° C. for 5 hours. After the completion of the reaction, the mixture was filtered and concentrated to obtain a crude product. The crude product was purified by preparative HPLC (chromatographic column: Welch Xtimate C18 150*25 mm*5 μm; Mobile phase: [water (10 mM NH4HCO3)-acetonitrile]; Acetonitrile %: 40%-70%, 8 min) to obtain compound 2. LCMS: (ESI) m/z: 521.15 [M+1]+. 1H NMR (400 MHz, DMSO-d6) δ=9.65 (br d, J=8.4 Hz, 1H), 8.04 (s, 1H), 7.54-7.44 (m, 3H), 7.24 (d, J=2.0 Hz, 1H), 7.13-6.97 (m, 4H), 4.72-4.68 (m, 1H), 4.25-4.17 (m, 2H), 2.36-2.25 (m, 3H), 2.07-1.93 (m, 1H), 1.82-1.69 (m, 2H), 1.52-1.37 (m, 2H).
Synthesis Route:
Step 1: Synthesis of Compound 003-1
To dissolve compound A1 (10 g, 29.11 mmol, 1 eq) in dichloromethane (100 mL), m-chloroperoxybenzoic acid (7.53 g, 43.66 mmol, 1.5 eq) was added at 0° C. the mixture was reacted at 20° C. for 15 hours. The reaction solution was quenched by add saturated brine. The mixture was extracted with ethyl acetate (50 mL×3), washed with saturated brine, dried over anhydrous sodium sulfate, and concentrated to obtain a crude product. The crude product was purified by column chromatography (eluent: petroleum ether:ethyl acetate=10:1) to obtain compound 003-1. LCMS: (ESI) m/z: 304.2 [M−tBu+1]+.
Step 2: Synthesis of Compound 003-2
To dissolve compound 003-1 (5 g, 13.91 mmol, 1 eq) in tetrahydrofuran (10 mL), lithium aluminum tetrahydrogen (2.5M, 8.34 mL, 1.5 eq) was added at −20° C. the mixture was reacted at 20° C. for 3 hours. After the completion of the reaction, the reaction was quenched by adding sodium hydroxide solution. The mixture was filtered. The filter cake was washed with ethyl acetate. The filtrate was combined, and concentrated to obtain a crude product. The crude product was purified by column chromatography (eluent: petroleum ether:ethyl acetate=3:1) to obtain compound 003-2. LCMS: (ESI) m/z: 306.1 [M−tBu+1]+.
Step 3: Synthesis of Compound 003-3
To dissolve compound 003-2 (0.117 g, 323.61 μmol, 1 eq) in acetonitrile (2 mL), Silver oxide (224.97 mg, 970.83 μmol, 3 eq) and iodomethane (459.33 mg, 3.24 mmol, 201.46 μL, 10 eq) were added sequentially at 20° C. under the atmosphere of nitrogen. Then the mixture was heated to 80° C. for 12 hours. The reaction solution was cooled and then filtered, and the filtrate was concentrated to obtain compound 003-3. Compound 003-3 was directly used in the next step without purification. LCMS: (ESI) m/z: 319.85 [M−tBu+H]+.
Step 4: Synthesis of Compound 003-4
Combined compound 003-3 (700 mg, 1.86 mmol, 1 eq) obtained by parallel operation through step 3 was dissolved in dichloromethane (5 mL), and then zinc bromide (1.68 g, 7.46 mmol, 373.09 μL, 4 eq) was added. The mixture was reacted at 20° C. for 48 hours, and then quenched with ammonia, extracted with dichloromethane (20 mL*2).
The organic phase was combined, dried over anhydrous sodium sulfate, filtered, and concentrated to obtain compound 003-4. Compound 003-4 was directly used in the next step without purification. LCMS: (ESI) m/z: 276.1 [M+1]+.
Step 5: Synthesis of Compound 003-6
Compound 003-5 (127.65 mg, 718.80 μmol, 0.6 eq), compound 003-4 (330 ng, 1.20 mmol, 1 eq), and N, N-diisopropylethylamine (464.50 mg, 3.59 mmol, 626.01 μL. 3 eq) were dissolved in N-methylpyrrolidone (2 mL). The mixture was reacted with microwave at 200° C. for 2 hours. The reaction solution was poured into 20 mL of water, extracted with ethyl acetate (30 mL*2). The organic phase was combined, dried over anhydrous sodium sulfate, concentrated, and separated by column chromatography (eluent: dichloromethane:methanol=50:1-20:1) to obtain 003-6. LCMS: (ESI) m/z: 303.1 [M+1]+.
Step 6: Synthesis of Compound 003-8
Compound 003-6 (70 mg, 231.54 μmol, 1 eq), compound 003-7 (161.61 mg, 694.61 μmol, 3 eq) were dissolved in methanol (3 mL), and then potassium hydroxide (38.97 mg, 694.61 μmol, 3 eq) was added. The mixture was reacted at 30° C. for 72 hours, and then 30 mL of water was added, extracted with dichloromethane (30 mL*3). The organic phase was combined, dried over anhydrous sodium sulfate, concentrated, and purified by column chromatography (eluent: dichloromethane:methanol=40:1) to obtained compound 003-8. LCMS: (ESI) m/z: 535.1 [M+1]+.
Step 7: Synthesis of Compound 3
to dissolved compound 003-8 (26 mg, 48.60 μmol, 1 eq) in dichloromethane (2 mL), manganese dioxide (169.01 mg, 1.94 mmol, 40 eq) was added. The mixture was reacted at 25° C. for 72 hours, and then filtrated. The filtrate was concentrated and purified by preparative thin-layer chromatography (developing solvent: dichloromethane:methanol=20:1) to obtain compound 3. LCMS: (ESI) m/z: 533.1 [M+1]+. 1H NMR (400 MHz, CDCl3) δ=9.82 (br d, J=8.4 Hz, 1H), 8.11 (s, 1H), 7.36-7.25 (m, 4H), 7.16 (s, 1H), 7.04-7.01 (m, 3H), 6.87-6.90 (m, 1H), 4.62 (s, 1H), 4.05 (s, 1H), 3.71-3.93 (m, 3H), 4.60-4.44 (m, 2H), 3.43 (s, 3H), 1.94-1.93 (m, 1H), 1.67-1.64 (m, 1H).
Synthesis Route:
Step 1: Synthesis of Compound 004-3
To dissolved compound 003-5 (0.1 g, 563.09 μmol, 1 eq) and compound 004-2 (94.39 mg, 563.09 μmol, 1 eq, HCl) in N-methylpyrrolidone (2 mL), N, N-diisopropylethylamine (145.55 mg, 1.13 mmol, 196.16 μL, 2 eq) was added. The mixture was reacted with microwave at 200′C for 4 hours at 200° C. The reaction solution was poured into 15 mL water, extracted with ethyl acetate (20 mL*2). The organic phase was combined, washed with saturated brine (10 mL*2), dried over anhydrous sodium sulfate, concentrated, and purified by column chromatography (eluent: dichloromethane:methanol=50:1 to dichloromethane:methanol=20:1) to obtain compound 004-3. LCMS: (ESI) m/z: 273.2 [M+1]+. 1H NMR (400 MHz, CDCl3) δ=11.13 (br s, 1H), 7.98 (s, 1H), 7.00 (br s, 1H), 6.47 (br d, J=2.4 Hz, 1H), 4.97 (br d, J=8.4 Hz, 1H), 4.16-4.03 (mu, 2H), 3.48-3.42 (m, 2H), 3.25-3.10 (m, 2H), 2.22-2.18 (m, 2H), 1.91-1.85 (m, 1H), 1.52-1.37 (m, 2H).
Step 2: Synthesis of Compound 004-4
The compounds 004-3 (0.3 g, 1.10 mmol, 1 eq) and compound 003-7 (281.96 mg, 1.21 mmol, 1.1 eq) obtained according to step 1 were dissolved in MeOH (5 mL), and KOH (154.53 mg, 2.75 mmol, 2.5 eq) was added. The mixture was reacted at 20° C. for 36 hours. After the completion of the reaction, the reaction solution was poured into 50 mL water, extracted with dichloromethane (50 mL*2). The organic phase was combined, dried over anhydrous sodium sulfate, concentrated and purified by preparative HPLC (chromatographic column: Phenomenex Luna C18 100*30 mm*5 μm; Mobile phase: [water (0.04% HCl)-acetonitrile]; Acetonitrile %: 30%-60%, 10 min) to obtain compound 004-4. LCMS: (ESI) m/z: 505.3 [M+1]+.
Step 3: Synthesis of Compound 4
To dissolved compound 004-4 (40 mg, 79.21 μmol, 1 eq) in DCM (10 mL), MnO2 (68.87 mg, 792.14 μmol, 10 eq) was added, the mixture was reacted at 20° C. for 36 hours, and then filtered. The filtrate was concentrated and purified by preparative HPLC (chromatographic column: Phenomenex Gemini-NX C18 75*30 mm*3 μm; Mobile phase: [water (10 mM NH4HCO3)-acetonitrile]; Acetonitrile %: 42%-72%, 10.5 min) to obtain compound 4. LCMS: (ESI) m/z: 503.2 [M+1]+. 1H NMR (400 MHz, DMSO-d6) δ=9.49 (d, J=8 Hz, 1H), 8.23 (s, 1H), 7.74 (s, 1H), 7.56 (d, J=8 Hz, 1H), 7.47 (t, J=8 Hz, 2H), 7.27-7.23 (m, 1H), 7.19-7.17 (m, 2H), 7.03-7.01 (m, 1H), 4.71-4.68 (m, 1H), 4.34-4.21 (m, 2H), 3.25-3.19 (m, 3H), 1.79-1.23 (m, 4H).
Synthesis Route:
Step 1: Synthesis of Compound 005-2
To dissolve compound 005-1 (980 mg, 5.75 mmol, 1 eq) and 003-7 (1.60 g, 6.89 mmol, 1.2 eq) in MeOH (25 mL), potassium hydroxide (1.13 g, 20.11 mmol, 3.5 eq) was added. The mixture was reacted at 25° C. for 36 hours. The reaction solution was poured into 50 mL water, adjusted the pH to 7 with 1N hydrochloric acid, and extracted with ethyl acetate (50 ml*2). The organic phase was combined, dried, concentrated over anhydrous sodium sulfate and purified by preparative HPLC (chromatographic column: Phenomenex Luna C18 100*30 mm*5 am; Mobile phase: [water (0.04% HCl)-acetonitrile]; Acetonitrile %: 40%-70%, 10 min.) to obtain compound 005-2. LCMS: (ESI) m/z: 417.0 [M+1]+.
Step 2: Synthesis of Compound 005-3
To dissolve compound 005-2 (0.3 g, 718.98 μmol, 1 eq) in acetic acid (2 mL), hydrobromic acid (745.00 mg, 4.42 mmol, 500.00 μL. 48% content, 6.15 eq) was added. The mixture was reacted at 25° C. for 20 minutes. The reaction solution was poured into 20 ml of water, adjusted the pH to 7 with saturated brine, extracted with dichloromethane (30 ml*2). The organic phase was combined, dried over anhydrous sodium sulfate, filtered, concentrated to obtain compound 005-3. LCMS: (ESI) m/z: 403.0 [M+1]+.
Step 3: Synthesis of Compound 005-4
To dissolve compound 005-3 (0.28 g, 694.39 μmol, 1 eq) in DCM (20 mL), MnO2 (845.15 mg, 9.72 mmol, 14 eq) was added. The mixture was reacted at 40° C. for 16 hours, and then Filtered. The filtrate was concentrated and purified by column chromatography (eluent: dichloromethane:methanol=50:1 to dichloromethane:methanol=25:1) to obtain compound 005-4. LCMS: (ESI) m/z: 401.0 [M+1]+.
Step 4: Synthesis of Compound 5
To dissolve compound 005-4 (20 mg, 49.85 μmol, 1 eq) and compound 004-2 (8.36 mg, 49.85 μmol, 1 eq, HCl) in NMP (3 mL), N, N-diisopropylethylamine (12.89 mg, 99.70 μmol, 17.37 μL, 2 eq) was added. Then the mixture was reacted with microwave at 180° C. for 4 hours. The reaction solution was poured into 10 mL of water, extracted with ethyl acetate (10 mL*2). The organic phase was combined, washed with saturated brine (10 mL*2), dried over anhydrous sodium sulfate, concentrated, and purified by preparative HPLC (chromatographic column: Phenomenex Luna C18 100*30 mm*5 μm; Mobile phase: [water (0.04% HCl)-acetonitrile]; Acetonitrile %: 30%-60%, 10 min.) to obtain Compound 5. LCMS: (ESI) m/z: 496.2 [M+1]+. 1H NMR (400 MHz, DMSO-d6) δ=8.57 (br d, J=7.6 Hz, 1H), 8.08 (d, J=6.8 Hz, 1H), 7.67 (s, 1H), 7.56-7.46 (m, 3H), 7.27-7.17 (m, 4H), 7.03-7.01 (m, 1H), 4.11-4.09 (m, 1H), 3.81 (br s, 1H), 3.59-3.52 (m, 2H), 3.14 (br t, J=10.8 Hz, 1H), 2.25-2.22 (m, 1H), 1.78-1.75 (m, 1H), 1.54-1.34 (m, 2H).
The specific assay process of BTK enzyme activity assay is as follows: Buffer solution: 20 mM hydroxyethyl piperazine ethanesulfonic acid (Hepes) (pH 7.5), 10 mM magnesium chloride, 1 mM ethylenebis(oxyethylenenitrilo)tetraacetic acid (EGTA), 0.02% polyoxyethylene dodecyl ether (Brij35), 0.02 mg/mL BSA, 0.1 mM sodium vanadate (Na3VO4), 2 mM dithiothreitol (DTT), 1% DMSO, 200 μM adenosine triphosphate (ATP).
Conclusion: The compounds of the present disclosure have strong inhibitory effect on BTKC481S mutation.
| Number | Date | Country | Kind |
|---|---|---|---|
| 202011437580.2 | Dec 2020 | CN | national |
| Filing Document | Filing Date | Country | Kind |
|---|---|---|---|
| PCT/CN2021/136117 | 12/7/2021 | WO |
