Claims
- 1. A method, comprising:
selecting a diverse group of sera, the diverse group of sera having different characteristics; diluting each serum of the diverse group of sera with a plurality of different diluents; obtaining information associated with a mass spectrum of each of the diluted sera from the diverse group of sera using an electrospray process; generating a control model based at least in part on the spectrum obtained from the diverse group of sera; diluting a test serum with a test diluent; performing mass spectrometry on the test serum to obtain a test spectrum associated with the test serum; mapping the test spectrum obtained from said performing to the control model; determining whether the test spectrum obtained from said performing maps to the control model.
- 2. The method of claim 1, said generating further comprising:
selecting a cluster that contains the greatest number of vectors from the spectra to define the control model.
- 3. The method of claim 1, wherein said diluting each serum of the diverse group of sera includes diluting the sera with diluents having a predetermined diluent concentration, and said diluting a test serum with a test diluent includes diluting a test serum with a diluent having the same concentration as the diluent used to dilute each serum of the diverse group of sera.
- 4. The method of claim 1, wherein said diluting each serum of the diverse group of sera includes diluting the sera with diluents having a predetermined diluent concentration, and said diluting a test serum with a test diluent includes diluting a test serum with a diluent having a different concentration than the diluent used to dilute each serum of the diverse group of sera.
- 5. The method of claim 1, further comprising:
classifying a biological state from the spectrum based on a predetermined biological state model.
- 6. The method of claim 1, wherein if said determining determines that the spectrum does not map to the control model, and the diluent is a first diluent, the method further comprising:
repeating the steps of diluting, performing, mapping, and determining for a second diluent.
- 7. The method of claim 1, said selecting further comprising:
selecting at least two different sera from a pool of diverse sera, the pool of diverse sera consisting of: sera from healthy males, sera from healthy females, sera from males afflicted with a disease, sera from females afflicted with a disease, sera from persons of different races, and sera from people of different ages.
- 8. The method of claim 1, wherein said generating includes:
identifying at least one cluster in common to the sera of the diverse group of sera and the plurality of different diluent; and selecting only one cluster as part of the control model.
- 9. The method of claim 1, wherein the obtaining information includes:
obtaining information on sera diluted with two different diluents, the diluents including at least acetonitrile and methanol.
- 10. The method of claim 1, wherein the test diluent is one of the plurality of different diluents.
- 11. The method of claim 1, wherein the test diluent is not one of the plurality of different diluents.
- 12. A method of quality assurance employing a control model generated based on mass spectra obtained from sera analyzed following an electrospray process, the spectra being associated with a plurality of different sera and a plurality of different diluents, comprising:
diluting a serum using a diluent; ionizing the diluted serum using an electrospray ionization process; performing mass spectrometry on the ionized diluted serum to obtain spectral data associated with the serum and the diluent; and mapping the spectrum to the control model, said mapping being performed to determine if the serum and the diluent are suitable for further diagnostics.
- 13. The method of claim 12, further comprising:
determining that the serum and diluent are suitable for further diagnostics; and submitting the spectral data to a biological model to determine if the biological sample exhibits a particular biological state.
- 14. The method of claim 13, wherein diluting a serum includes diluting a serum using one of acetonitrile and methanol.
- 15. A method, comprising:
diluting at least two sera of a diverse group of sera with a diluent having a plurality of different concentrations to yield a plurality of diluted sera samples, the plurality of diluted sera samples having different concentrations of serum to diluent; ionizing at least some of the plurality of diluted sera samples using an electrospray ionization process to yield a plurality of ionized diluted sera; obtaining spectral data associated with the ionized diluted sera; generating a control model associated with the diluted sera samples; diluting a test serum with a diluent to yield a diluted test serum; ionizing the diluted test serum using the electrospray ionization process to yield an ionized diluted test serum; obtaining spectral data associated with the diluted test serum; mapping the spectral data associated with the diluted test serum to the control model; and determining whether the diluted test serum produces a spectrum within a predetermined tolerance.
- 16. The method of claim 15, wherein said diluting at least two of a diverse group of sera includes diluting a diverse group of sera using at least one of acetonitrile and methanol.
- 17. The method of claim 15, wherein said diluting at least two sera of a diverse group sera includes creating a plurality of dilutions of the at least two of the plurality of diverse group of sera with a diluent having a plurality of concentrations.
- 18. The method of claim 15, wherein said diluting at least two sera of a diverse group of sera includes creating a plurality of dilutions of the at least two of the plurality of diverse group of sera with a diluent having a plurality of concentrations, the concentrations ranging between 1:250 to 1:1000.
- 19. The method of claim 15, wherein said generating the control model includes:
determining the location of at least one cluster in n-dimensional space; and selecting a cluster having the greatest number of vectors within the cluster to define the control model.
- 20. The method of claim 15, wherein said diluting the test serum includes diluting the test serum with a known diluent.
- 21. The method of claim 15, wherein said diluting the test serum with a diluent includes diluting the test serum with the same diluent used to dilute the at least two sera of a diverse group of sera.
- 22. The method of claim 15, wherein said diluting the test serum with a diluent includes diluting the test serum with a different diluent than the diluent used to dilute the at least two sera of a diverse group of sera.
- 23. The method of claim 15, wherein the test diluent is one of the plurality of different diluents.
- 24. A method, comprising:
diluting a first serum and a second serum, the first serum having different properties from the second serum, the first serum and the second serum being diluted with a diluent to produce a diluted first serum and a diluted second serum; ionizing the diluted first serum using an electrospray ionization process; obtaining spectral data associated with the diluted first serum; ionizing the diluted second serum using an electrospray ionization process; obtaining spectral data associated with the diluted second serum; mapping the spectral information obtained from the diluted first serum and the diluted second serum into n-dimensional space; generating a control model based on said mapping, the control model being based on the diluted first serum and the diluted second serum; diluting a test serum with a diluent to yield a diluted test serum; ionizing the diluted test serum using the electrospray ionization process to yield an ionized diluted test serum; obtaining spectral data associated with the diluted test serum; mapping the spectral data associated with the diluted test serum to the control model; and determining whether the diluted test serum produces a spectrum that satisfies predetermined criteria.
- 25. The method of claim 24, wherein said ionizing the diluted first serum and ionizing the diluted second serum are ionized by the same electrospray ionization process.
- 26. The method of claim 24, wherein said determining whether the diluted test serum produces a spectrum that satisfies predetermined criteria includes:
identifying whether the spectrum is within one of a first hypervolume and a first volume such that one of the first volume and the first hypervolume excludes at least 90% of one of a second hypervolume and a second volume, the one of a second hypervolume and a second volume being the total volume of hypervolume of an n-dimensional space.
CROSS-REFERENCE TO RELATED APPLICATIONS
[0001] This application claims priority under 35 U.S.C. § 119(e) to U.S. Provisional Patent Application No. 60/389,831, entitled “Quality Assurance/Quality Control for SELDI-TOF Mass Spectra,” filed on Jul. 29, 2002, the contents of which are hereby incorporated by reference in its entirety.
STATEMENT OF FEDERALLY SPONSORED RESEARCH
[0002] The research work described here was supported under a Cooperative Research and Development Agreement (CRADA) between the US Government and Correlogic Systems, Inc.
Provisional Applications (1)
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Number |
Date |
Country |
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60398831 |
Jul 2002 |
US |