The present invention relates generally to anemia, and more specifically to anemia disease genes targeting.
The human α-like (5′-ζ(embryonic)-α2-α1 (fetal/adult)-θ1 (fetal/adult)-3′) and β-like (5′-ε (embryonic)-Gγ(fetal)-Aγ(fetal)-δ-β(adult)-3′) globin gene clusters each extend over 50 kb on chromosomes 16 and 11, respectively. Expressions of the genes within both clusters in erythroid cells are under temporal control during development, with reciprocal silencing of the embryonic/fetal globin genes and induction of the fetal/adult globin genes in a gene-order manner (hemoglobin switch). The coordinated hemoglobin switch processes of the two clusters are also accompanied with shifting of the hematopoiesis sites. A number of previous studies have shown that the erythroid tissue- and developmental stage-specific expressions of the mammalian globin gene clusters including those of the humans are regulated by a variety of different protein-DNA and protein-protein complexes formed at different DNA sequence motifs within the globin gene promoters and their upstream regulatory elements (URE), i.e., the β-LCR and α-HS-40. These proteins include transcription factors serving as either activators or repressors, which include GATA1, NF-E2, EKLF, YY1, TR2/TR4, NF-E4 and BCL11A, etc.
Identification and detailed analysis of the transcription repressors of the embryonic/fetal globin genes would allow the design of appropriate therapeutic approached to re-turn on these genes, thus substitute for the functioning of the defective/silenced/deleted adult α or β globin gene in sickle cell anemia and severe thalassemia.
In one aspect, the invention relates to a method of screening compounds capable of activating ζ and/or ε globin gene promoter activity in an erythroid cell. The method comprises: a) contacting in a medium a compound to be screened with RREB1; wherein the medium comprises a polynucleotide comprising the nucleotide sequence of 5′-M-C-M-C-A-M-M-H-M-M-M-3′, wherein M is the nucleotide adenine or cytosine, and H is the nucleotide adenine, cytosine or thymine; the RREB1 bindable to the polynucleotide; b) determining binding of the compound to the RREB1; and c) determining change in binding of the RREB1 to the polynucleotide; wherein detection of binding of the compound to the RREB1 and change in binding of the RREB1 to the polynucleotide is indicative that the compound is capable of activating the ζ and/or ε globin gene promoter activity in the erythroid cell.
In another aspect, the invention relates to a method of activating ζ and/or ε globin gene promoter activity in an erythroid cell. The method comprises contacting the cell with a composition comprising a nucleic acid corresponding to the sequence of SEQ ID NO: 9, SEQ ID NO: 10, SEQ ID NO: 12, or SEQ ID NO: 13, thereby activating the ζ and/or ε globin gene promoter activity in the erythroid cell.
Further in another aspect, the invention relates to a method of treating a subject with thalassemias and/or sickle cell anemia. The method comprises administering to the subject a vector expressing a nucleic acid corresponding to the sequence of SEQ ID NO: 12 or SEQ ID NO: 13, thereby treating the subject with thalassemias and/or sickle cell anemia.
These and other aspects will become apparent from the following description of the preferred embodiment taken in conjunction with the following drawings, although variations and modifications therein may be affected without departing from the spirit and scope of the novel concepts of the disclosure.
The accompanying drawings illustrate one or more embodiments of the invention and, together with the written description, serve to explain the principles of the invention. Wherever possible, the same reference numbers are used throughout the drawings to refer to the same or like elements of an embodiment.
) in the presence of 100-fold molar excess of cold GATA1 oligo.
) of band “G”, but not band “a” or band “b”, upon pre-incubation with anti-GATA1 (lanes 5-7).
The terms used in this specification generally have their ordinary meanings in the art, within the context of the invention, and in the specific context where each term is used. Certain terms that are used to describe the invention are discussed below, or elsewhere in the specification, to provide additional guidance to the practitioner regarding the description of the invention. For convenience, certain terms may be highlighted, for example using italics and/or quotation marks. The use of highlighting has no influence on the scope and meaning of a term; the scope and meaning of a term is the same, in the same context, whether or not it is highlighted. It will be appreciated that same thing can be said in more than one way. Consequently, alternative language and synonyms may be used for any one or more of the terms discussed herein, nor is any special significance to be placed upon whether or not a term is elaborated or discussed herein. Synonyms for certain terms are provided. A recital of one or more synonyms does not exclude the use of other synonyms. The use of examples anywhere in this specification including examples of any terms discussed herein is illustrative only, and in no way limits the scope and meaning of the invention or of any exemplified term. Likewise, the invention is not limited to various embodiments given in this specification.
Unless otherwise defined, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art to which this invention pertains. In the case of conflict, the present document, including definitions will control.
As used herein, “around”, “about” or “approximately” shall generally mean within 20 percent, preferably within 10 percent, and more preferably within 5 percent of a given value or range. Numerical quantities given herein are approximate, meaning that the term “around”, “about” or “approximately” can be inferred if not expressly stated.
In one aspect, the invention relates to a method of screening compounds capable of activating ζ and/or ε globin gene promoter activity in an erythroid cell. The method comprises: a) contacting in a medium a compound to be screened with RREB1; wherein the medium comprises a polynucleotide comprising the nucleotide sequence of 5′-M-C-M-C-A-M-M-H-M-M-M-3′, wherein M is the nucleotide adenine or cytosine, and H is the nucleotide adenine, cytosine or thymine; the RREB1 bindable to the polynucleotide; b) determining binding of the compound to the RREB1; and c) determining change in binding of the RREB1 to the polynucleotide; wherein detection of binding of the compound to the RREB1 and change in binding of the RREB1 to the polynucleotide is indicative that the compound is capable of activating the ζ and/or ε globin gene promoter activity in the erythroid cell.
In one embodiment of the invention, the aforementioned method is for identifying a compound capable of increasing ζ and/or ε globin gene promoter activity in an erythroid cell, in which the method comprises detecting binding of the compound to be screened to the RREB1 and inhibition of binding of the RREB1 to the polynucleotide.
In another embodiment of the invention, the compound is capable of increasing expression of two or more than two globin genes chosen from ζ globin gene, ε globin gene and α globin gene.
In another embodiment of the invention, the compound is capable of increasing expression of ζ globin gene, ε globin gene and α globin gene.
In another embodiment of the invention, the compound is capable of increasing expression of ζ globin gene and α globin gene.
In another embodiment of the invention, the compound is capable of increasing expression of ζ globin and ε globin genes.
In another embodiment of the invention, the aforementioned method is for screening antianemic agents.
In another embodiment of the invention, the aforementioned method is for screening agents for treating thalassemias and/or sickle cell anemia.
In another embodiment of the invention, the polynucleotide is replaced by a DNA comprising the nucleotide sequence of SEQ ID NO: 26.
In another embodiment of the invention, the polynucleotide is replaced by a DNA comprising the nucleotide sequence of SEQ ID NO: 28.
In another aspect, the invention relates to a method of activating ζ and/or ε globin gene promoter activity in an erythroid cell. The method comprises contacting the cell with a composition comprising a nucleic acid corresponding to the sequence of SEQ ID NO: 9, SEQ ID NO: 10, SEQ ID NO: 12, or SEQ ID NO: 13, thereby activating the ζ and/or ε globin gene promoter activity in the erythroid cell.
Further in another aspect, the invention relates to a method of treating a subject with thalassemias and/or sickle cell anemia. The method comprises administering to the subject a vector expressing a nucleic acid corresponding to the sequence of SEQ ID NO: 12 or SEQ ID NO: 13, thereby treating the subject with thalassemias and/or sickle cell anemia.
In one embodiment of the invention, the vector is a lentiviral vector.
In another embodiment of the invention, the nucleic acid is a short hairpin RNA (shRNA).
Further in another embodiment of the invention, the nucleic acid is a short interfering RNA (siRNA).
Yet in another embodiment of the invention, the administering decreases the amount of RREB-1 protein expressed by the erythroid cell.
The invention relates to the discovery that the activity of the HS-40-linked ζ globin promoter with the ZF2 mutated is relatively higher than the wild type ζ promoter in transgenic mice. With combined use of transient transfection, site-directed mutagenesis and electrophoretic mobility shift assays, attempts have been made to identify the putative factor(s) binding to the ZF2 motif. These assays together with RNAi knock-down experiments suggest that RREB1 is one of the factors repressing the ζ globin promoter activity through binding to the ZF2 motif.
The invention relates to the transcription repressors of embryonic/fetal globin genes and the design of therapeutic approaches to re-turning on these genes to substitute for the functioning of the defective/silenced/deleted adult α or β globin gene in sickle cell anemia and severe thalassemia. Using a variety of molecular, cellular, and transgenic mice technologies, it was discovered that the protein RREB1 is a repressor responsible for developmental silencing of the human embryonic ζ and ε globin gene expressions. The invention relates to RREB1 for use as the target for designing of new therapeutic approaches and development of new drugs to return-on the expression of human ζ and ε globin gene expressions in fetal/adult erythroid cells of patients with thalassemias or sickle cell anemia.
The mammalian embryonic ζ globin genes, including that of the humans, are expressed at the early embryonic stage and then switched off during erythroid development. This autonomous silencing of the ζ globin gene transcription is likely regulated by the co-operative works among various protein-DNA and protein-protein complexes formed at the ζ globin promoter and its upstream enhancer (HS-40). It was discovered by the inventors that a protein-binding motif, ZF2, contributes to the repression of the HS-40 regulated human ζ promoter activity in erythroid cell lines and in transgenic mice. Combined site-directed mutagenesis and electrophoretic mobility shift assay (EMSA) suggest that repression of the human ζ globin promoter is mediated through binding of the zinc-finger factor RREB1 to ZF2. This model is further supported by the observation that the human ζ globin gene transcription is elevated in human erythroid K562 cell line or the primary erythroid culture upon RNAi knock-down of RREB1 expression. These data together suggest that RREB1 is a putative repressor for the silencing of the mammalian ζ globin genes during erythroid development. Since ζ globin is a powerful inhibitor of HbS polymerization, our experiments have provided a foundation for therapeutic upregulation of ζ globin gene expression in patients with severe hemoglobinopathies.
Compound binding of RREB1. Compound binding properties of RREB1 are assessed using purified 6His-v5 tagged compound immobilized to a NICKEL-SEPHAROSE™ column (via the 6His tag). Compounds are passed through the column (e.g., 50 μl of 100 nM) in the presence of 10 mM NH4OAc (pH 7.4) and 10% MeOH. Flow through is analyzed for compound content by mass spectroscopy. Some compounds may give a stronger signal by MS, signal strengths will be normalized to show the effects of RREB1 on compound retention. In the presence of RREB1, if some selected compounds have a much longer retention time in the column, it will indicate a stronger association of these particular compounds with RREB1. When marked increases in retention times are only seen with a subset of compounds, it indicates that not only does RREB1 bind compounds, but it also displays selectively in the compounds it binds.
A high throughput assay for measuring RREB1 DNA binding. The assay is used for determining the effects of molecules on the association of RREB1 with double stranded DNA (dsDNA). This assay uses fluorescence polarization to measure the interaction of RREB1 with dsDNA. This assay has 4 components:
i) a dsDNA comprising RREB1 binding consensus sequence: 5′-M-C-M-C-A-M-M-H-M-M-M-3′, wherein M is the nucleotide adenine (A) or cytosine (C), and H is the nucleotide adenine (A), cytosine (C) or thymine (T).
Both the sense and antisense strands are labeled with FITC at the 3′ end using a 6 carbon spacer.
ii) Purified RREB1. Human RREB1 tagged at the amino terminus with the 6His and v5 tags is synthesized in baculovirus and purified using NI2+-SEPHAROSE™ chromatography.
iii) reaction buffer (1×):100 mN Tris HCl (pH 7.5), 800 mM NaCl, 10 mM EDTA, 100 mM β-mercaptoethanol, 1% (w/v) TWEEN-20™.
iv) Fluorescence polarization plate reader (TECAN POLARION™ or other equivalent device).
Methodology. A mastermix is prepared consisting of 1× reaction buffer, 2 nM labeled oligo and 0.125 or 0.250 μg RREB-1 per 100 μl of mastermix. Compounds are added to the bottom of a 96 well plate. 100 μl of mastermix is added to each well and allowed to equilibrate for 30 sec. fluorescence polarization is then measured (see U.S. Pat. No. 7,851,153, which is herein incorporated by reference in its entirety).
Without intent to limit the scope of the invention, exemplary instruments, apparatus, methods and their related results according to the embodiments of the present invention are given below. Note that titles or subtitles may be used in the examples for convenience of a reader, which in no way should limit the scope of the invention. Moreover, certain theories are proposed and disclosed herein; however, in no way they, whether they are right or wrong, should limit the scope of the invention so long as the invention is practiced according to the invention without regard for any particular theory or scheme of action.
Plasmids. The construct pBS-HS40-ζ-hGH (
Cell cultures and DNA transfection. K562 cells were maintained in RPMI 1640 medium supplemented with 10% FBS and 1% penicillin-streptomycin in a 37° C. chamber under a 5% CO2 humidified atmosphere. MEL, HeLa and 293T cells were cultured in the same condition but in DMEM (GIBCO). For DNA transfections, the cells were harvested at the density of 5-8×105 (K562) or 8−10×105 (MEL, 293T and HeLa) per ml. The transfection was carried out using NEON™ transfection system (INVITROGEN™). 2×106 cells were transfected with 5 μg, of the test plasmids and 1 μg of pCMV-β-gal. Following microporation, the K562 cells were seeded in 6-well plates with 5 ml antibiotics-free RPMI for 48 hrs before the hGH assay. The MEL cells were seeded with 5 ml antibiotics-free DMEM for 24 hrs and then induced with 2% DMSO for 96 hrs before the hGH assay. The 293T and HeLa cells were seeded in 6-well plates with 5 ml antibiotics-free DMEM for 48 hrs before the hGH assay.
Generation and genotype analysis of transgenic mice. The transgenic mice were generated in the transgenic core facility at IMB using the standard pronuclei microinjection method. The Xho I-Not I DNA fragments isolated from the pBS-HS40-ζ-GH plasmid series (see
Semi-quantitative RT-PCR analysis. For induction of anemia, 8-month-old mice were injected with phenylhydrazine (40 μg/g of body weight) twice separated by 8 hrs. The treated mice were sacrificed on the sixth day and the tissue RNAs were isolated by Trizol reagent (Invitrogen). Each RT reaction was performed with use of SuperScript II reverse transcriptase (Invitrogen) and 1 μg of RNA. One-tenth of the RT products was used as the template in PCR (Fermentas). The amplifications were carried out at the thermal cycle of 94° C. for 30 sec, 58° C. for 30 sec, and 72° C. for 30 sec. The products of hGH and mouse glyceraldehydes 3-phosphate dehydrogenase (G3PDH) are 313 bp and 525 bp, respectively. The sequences of the primers are as follows: 5′hGH, 5′-AGGAAGGCATCCAAACGCTG-3′ (SEQ ID NO: 5); 3′hGH, 5′-ATTAGGACAAGGCTGGTGGG-3′ (SEQ ID NO: 6); 5′mG3PDH, 5′-GGTCATCCATGACAACTTTGG-3′ (SEQ ID NO: 7); 3′mG3PDH, 5′-TCTTACTCCTTGGAGGCCATG-3′ (SEQ ID NO: 8).
Electrophoretic mobility shift assays (EMSA). Nuclear extracts were prepared from K562, MEL, HeLa and 293T cells as described previously, in the presence of protease inhibitors (Roche, Protease Inhibitor Cocktail Tablets). The oligos used are listed in
For further identification of the complexes by supershift assay, the antibody anti-GATA1 (sc-265, Santa Cruz Biotechnology Inc.) or anti-Myc (LTK BioLaboratories) was preincubated with the nuclear extract on ice for 30 min before use in EMSA. Normal IgG was used as the control.
siRNA interference. The target sequences for siRNA interference of RREB1 mRNA (siRNA 1, 5′-GGGCAGACCUUUCAUACAGUU-3′; SEQ ID NO: 9; siRNA 2, 5′-GAAGAAAGCUGAUGAAGUCUU-3′; SEQ ID NO: 10) were identified using the manufacturer's design (DHARMACON®, ON-TARGETPLUS™). One strand of the control duplex RNA targeting the firefly luciferase mRNA is 5′-CUUACGCUGAGUACUUCGAUU-3′ (SEQ ID NO: 11). 2×106 K562 cells were transfected with the duplex RNA oligos at the concentration of 100 nM. Using the NEON™ transfection system (INVITROGEN™), cells were microporated at 1,300V with a 30 ms width and one pulse, and then re-seeded in 2 ml antibiotics-free RPMI. 2 ml more of the medium were added to the cells 6 hrs later. After incubation for 48 hrs, half of the cells were harvested for assay of the gene expression. The remnants were re-microporated with siRNA oligos using the same conditions and incubated for another 48 hrs before assay.
Lentivirus-mediated knock-down experiments. Lentiviral plasmids (pLKO.1-shRNA) expressing short hairpin RNAs (snRNA 1, 5′-CCGGCCAGG AAACGAAAGAGGAGAACUCGAGUUCUCCUCUUUCGUUUCCUGGUUUUU-3′; SEQ ID NO: 12 and shRNA2, 5′-CCGGCGACGAUGACAAGAAAC CAAACUCGAGUUUGGUUUCUUGUCAUCGUCGUUUUU-3′; SEQ ID NO: 13) targeting the RREB1 mRNA were acquired from the TRC (The RNAi Consortium) lentiviral shRNA library. pLKO.1sh expressing a scramble shRNA and the shRNA-null puromycin-resistant vector (pLKO.1) were used to produce the control lentiviruses. The viruses were prepared by co-transfecting 293T cells the plasmid (pLKO.1-shRNA, pLKO.1sh, or pLKO.1), the packaging plasmid (pCMV-ΔR8.91), and the envelope plasmid (pMD.G). The culture medium containing lentiviruses were harvested at 64 hrs post-transfection for the estimation of the viral titer. For RNAi knockdown in K562 cells, spin-infection (MOI=2) was carried out at 2,750 g in 6-well plates for 30 minutes at 25° C., with a final concentration of 8 μg/ml of polybrene in the culture medium. After 24 hrs of lentiviral infection, the cells were selected with 2.5 μg/ml puromycin for another 4 days. The total RNAs were harvested from cells at 5 days and 10 days post-infection, respectively, for further quantitative RT-PCR analysis.
For RNAi knockdown experiments of primary human erythroid culture, the culture was initiated and prepared following the standard protocol except that STEMSPAN® SFEM medium (STEMCELL TECHNOLOGIES™) was used for culturing and maintenance of the cells. The cells were maintained in the differentiation medium at a density of 0.1˜1×106 cells/ml. The lentivirus transductions were carried out on day 2 of the phase II culture of erythroid differentiation. Puromycin (2 μg/ml) selection was started at 24 hrs post-transduction for 9 days, and the total RNAs were then isolated using the RNAQUEOUS®-Micro Kit (AMBION™) for analysis by quantitative RT-PCR.
Quantitative RT-PCR analysis. RNAs from E9.5 mouse embryos with the yolk sac and the E14.5 mouse fetal liver were isolated with use of TRIZOL® reagent (INVITROGEN™). The RNAs of the RNAi knockdown cells were purified using the RNAspin Mini kit (GE HEALTHCARE™). cDNA synthesis was carried out using SuperScript II reverse transcriptase (INVITROGEN™). Quantitative RT-PCR was performed by using the SYBR® Green PCR Master Mix (APPLIED BIOSYSTEMS™) and ABI 7500 real-time System. All data were analyzed after normalization to the expression level of mouse Glycophorin A (GPA) or human β-actin gene. The sequences of the primers used for the quantitative RT-PCR are as follows: 5′hGH, 5′-TAGAGGAAG GCATCCAAACG-3′ (SEQ ID NO: 14); 3′hGH, 5′-GTCTGCTTGAAGATCTGCCC-3′ (SEQ ID NO: 15); 5′mGPA, 5′-GCCGAATGACAAAGAAAAGTTCA-3′ (SEQ ID NO: 16); 3′mGPA, 5′-TCA ATAGAACTCAAAGGCACACTGT-3′ (SEQ ID NO: 17); 5′hβ-Actin, 5′-CCTGAACCCCAAGGCCAACC-3′ (SEQ ID NO: 18); 3′hβ-Actin, 5′-CAGGGATAGCACAGCCTGGA-3′ (SEQ ID NO: 19); 5′RREB1, 5′-CGACTTAGGATTCACGGACTT C-3′ (SEQ ID NO: 20); 3′RREB1, 5′-CAGACAAAACGGTGTTG CTC-3′ (SEQ ID NO: 21); 5′hGATA1, 5′-TGGCCTACTACAGG GACGCT-3′ (SEQ ID NO: 22); 3′hGATA1, 5′-CATATGGTGAG CCCCCTGG-3′ (SEQ ID NO: 23); 5′hG3PDH, 5′-CAACTTTGGT ATCGTGGAAGGACTC-3′ (SEQ ID NO: 24); 3′hG3PDH, 5′-AGG GATGATGTTCTGGAGAGCC-3′ (SEQ ID NO: 25). Ruei-Lin Chen et al. (2010) “Developmental Silencing of Human ζ-Globin Gene Expression Is Mediated by the Transcriptional Repressor RREB1” THE JOURNAL OF BIOLOGICAL CHEMISTRY VOL. 285, NO. 14, pp. 10189-10197, which is herein incorporated by reference in its entirety.
Functional role of the ZF2 motif in erythroid cell cultures. The factor-binding motifs in the human ζ globin promoter region from −250 to −70, as determining previously by footprinting analysis in K562 nuclear extract, are displayed in
Physiological role of ZF2 motif in transgenic mice. To further address the physiological role of ZF2 in the regulation of the ζ globin promoter, we analyzed transgenic mice carrying the same ζ-GH reporter fragments as used in
We have also analyzed the hGH expression in the mutant lines by RT-PCR analysis. First, to analyze the level in the adult mice, the mice were treated with phenylhydrazine to increase the erythropoiesis. RNAs were then isolated from the blood, spleen, liver, kidney and brain, and analyzed by semi-quantitative RT-PCR. As shown in
Factor-binding at the ZE2 motif. Following the above, we have used EMSA to examine the nature of the complex(es) formed on the ZF2 motif, in particular at the RREB1 sequence. For this, four oligos containing the wild type and the three different mutant ZF2 sequences listed in
As described in
The above suggested factor-binding scenario at the ZF2 motif in the K562 nuclear extracts was further confirmed by EMSA with 32P-labeled probe(s), 50-200-fold molar excess of cold oligo competitors and supershift assays (
That band “a” was a RREB1-DNA complex was further supported by a supershift assasy. Since no anti-RREB1 of supershift quality was available, we overexpressed Myc-tagged RREB1 by transient transfection of K562 cells with the plasmid pEF-Myc-RREB1 (lane 3 of the left panel,
Elevated expression of the human ζ globin gene in RREB1-depleted cells. To further verify the negative regulatory effect of RREB1 on the ζ globin promoter activity, as suggested above by data from
We also analyzed the level of the ζ globin mRNA in K562 cells after more persistent reduction of the RREB1 expression with use of two different recombinant lentiviruses each expressing a short hairpin RNA (shRNA) targeting the RREB1 mRNA. The empty lentiviral vector was used as the control. As seen, the RREB1-shRNAs reduced the RREB1 mRNA levels to 40% after 5 days of infection (data not shown) and the knock-down of RREB1 mRNA could last for 10 days (
Finally, we have tested the effect of knocking-down of RREB1 expression by lentiviral-based shRNA in primary culture of adult human erythroid cells. While shRNA1 could not effectively knockdown the level of RREB1 mRNA in the primary culture (data not shown), expression of the lentiviral-based shRNA2 consistently reduced the RREB1 mRNA level by 50% (
In this study, we have explored the possibility of re-turning on the human embryonic ζ globin gene at the adult stage by manipulating the formation of protein-DNA complex at a sequence motif, ZF2, in the ζ globin promoter region. We have also explored the identity of the factor(s) bound at ZF2 and repressing the ζ globin promoter activity. Our data suggest that binding of the factor RREB1 at ZF2 participates in the negative regulation of the ζ globin gene transcription during erythroid development.
Initially, the repressive role of ZF2 has been revealed from previous studies of mutagenized ζ globin promoter in K562 and MEL, both of which are well-established erythroid cell lines. The globin promoter activities from the different reporter plasmids were consistent with the cell-type and developmental-stage specificities of globin gene expression in the cell lines transfected. For example, the ζ globin promoter activity was lower in MEL than in K562, and it is extremely low in non-erythroid 293T and HeLa cells (Table 2). The role of ZF2 in K562 and MEL has been confirmed in the present study (
The results from the DNA transfection studies in erythroid cell lines and transgenic mice analysis suggest that factor-binding at the RREB1 sequence in the ZF2 motif plays a key role in the silencing of the ζ globin promoter during erythroid development. RREB1 is an ubiquitously expressed, approximately 180 KD zinc finger protein that represses several other promoters, e.g. p16 and PSA, through binding to the RREB1 sites in these promoters. Furthermore, the repression by RREB1 is likely mediated through the RREB1-containing CtBP co-repressor complex. Although we have not been able to carry out chromatin-immunoprecipitation(ChIP) experiment due to the inaccessibility of appropriate anti-RREB1 antibody, several lines of evidence from our studies are highly suggestive that RREB1 is the factor, if not the only one, involved in the repression of the human ζ globin gene in vivo through direct binding at the ZF2 motif. First, the RREB1 sequence of ZF2 (
In summary, the data described in this study identifies RREB1 as a repressor involved in the developmental silencing of the human ζ globin gene, and likely that of other mammals as well. The repression of the embryonic ζ globin gene by RREB1 is in interesting analogy to the other two autonomously regulated human globin genes, i.e. the embryonic ε globin gene by YY1 and TR2-TR4, and the fetal γ globin gene by NF-E4 and BCL11A. The identification of RREB1 as a possible switch factor for the ζ globin gene expression provides a new research target for the treatment of certain forms of severe α-thalassemia.
The foregoing description of the exemplary embodiments of the invention has been presented only for the purposes of illustration and description and is not intended to be exhaustive or to limit the invention to the precise forms disclosed. Many modifications and variations are possible in light of the above teaching.
The embodiments and examples were chosen and described in order to explain the principles of the invention and their practical application so as to enable others skilled in the art to utilize the invention and various embodiments and with various modifications as are suited to the particular use contemplated. Alternative embodiments will become apparent to those skilled in the art to which the present invention pertains without departing from its spirit and scope. Accordingly, the scope of the present invention is defined by the appended claims rather than the foregoing description and the exemplary embodiments described therein.
Some references, which may include patents, patent applications and various publications, are cited and discussed in the description of this invention. The citation and/or discussion of such references is provided merely to clarify the description of the present invention and is not an admission that any such reference is “prior art” to the invention described herein. All references cited and discussed in this specification are incorporated herein by reference in their entireties and to the same extent as if each reference was individually incorporated by reference.
The present application claims priority to U.S. Provisional Application Ser. No. 61/296,858, filed Jan. 20, 2010, which is herein incorporated by reference in its entirety.
Number | Date | Country | |
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61296858 | Jan 2010 | US |