The present invention relates to rapid assays for neuro-humoral factors modulated in response to cardiovascular stress and integration of data obtained from such assays to provide profiles of response to cardiovascular stress that can guide therapy.
Hemorrhage is characterized by a decline in cardiac output and by a compensatory vasoconstriction that supports perfusion of vital organs. Vasoconstriction worsens peripheral tissue perfusion in hemorrhagic shock and the goal of early resuscitation is to staunch bleeding and replenish intravascular volume and, thereby, restore cardiac output and perfusion.
However, severe hemorrhagic shock, particularly if resuscitation is delayed or protracted, can result in a transition to a late phase unresponsive to the restoration of intravascular volume. Late-phase hemorrhagic shock is a form of vasodilatory circulatory collapse previously thought to represent a pre-terminal failure of vascular smooth muscle cells. It has been discovered, however, that late-phase hemorrhagic shock does not reflect a general collapse of the contractile machinery of vascular smooth muscle, but rather reflects the deficiency of a hormone, vasopressin (see, for example, Landry and Oliver, 2001, N. Engl. J. Med. 345:588-595; Holmes et al., 2003, Critical Care 7:427-434; and Holmes et al., 2004, Critical Care 8:15-23).
In early hemorrhagic shock, vasopressin is markedly elevated but, in the late phase, plasma levels have declined significantly. For example, in a study of hemorrhagic shock in dog (Morales, 1999, Circulation 100(3):226-229) plasma vasopressin concentration averaged over 300 pg/mL (normal<5 pg/mL) during the acute phase of severe blood loss, but declined to levels below 30 pg/mL after 60-90 minutes of sustained and severe low blood pressure. Inappropriately low vasopressin in hemorrhagic shock is of interest because administration of low doses of the hormone (˜0.04 U/60 Kg/min), which increase its plasma concentration to levels similar to those found during the initial phase of shock (˜50-300 pg/mL), significantly increase arterial pressure (18 25-50 mm Hg). Vasopressin is therefore likely to be an essential component in the armamentarium of treatments for the vasodilatory shock associated with the late-phase of hemorrhagic shock.
The cardiovascular system evolved to achieve the convective transport of nutrients and oxygen to distant tissues and achieve removal of waste products and carbon dioxide. Blood pressure drives the flow in the transport system. But blood pressure in itself is a complex function of cardiac output, systemic vascular resistance, and blood viscosity, among other factors. A variety of neuro-humoral factors, in addition to vasopressin, regulate the determinants of blood pressure, including norepinephrine, epinephrine, renin, endothelin peptides, atrial natriuretic peptide (“ANP”), and brain natriuretic peptide (“BNP”). Clearly, marked derangements in blood pressure (e.g., the blood pressure of shock states) signify that an organism is succumbing to a cardiovascular stress. It is difficult, however, for a clinician to discern what patients are about to go into shock because a normal blood pressure may precede a catastrophic drop in blood pressure. In such circumstances, normal blood pressure may represent a metastable state maintained through the activation of neuro-humoral factors that may precipitously evolve to a formal collapse of function.
Because changes in levels of neuro-humoral factors may be harbingers of impending shock, the ability to assay such factors rapidly and in an ongoing fashion would provide a valuable guide for diagnosis, treatment, and prognosis of patients under cardiovascular stress not yet apparent through a discernable change in blood pressure. However, no system currently available can provide this information in a timely fashion, and permit an integration of levels of these factors into an appropriate assessment of disease.
The present invention relates to assays for neuro-humoral factors (“NHFs”) that may be performed in “real time,” meaning a time frame that permits the utilization of at least one NHF level as an index of hemodynamic stability and as the basis for clinical decision making in an acute-care context. The assays of the invention are directed to improving NHF capture, either through aptamers, including heteromeric DNA aptamers and/or high affinity antibodies.
For purposes of clarity, and not by way of limitation, the detailed description of the invention is divided into the following subsections:
A compound is a NHF, as defined herein, if it is a factor that is associated with blood pressure. Non-limiting examples of NHFs include vasopressin, norepinephrine, epinephrine, renin, endothelin peptides, atrial natriuretic peptide (“ANP”), and brain natriuretic peptide (“BNP”). Description herein applied to vasopressin may be analogously applied in assays for other NHF molecules. An “aptamer” is a nucleic acid molecule, which in specific non-limiting embodiments is more than 5 or 10 and less than 100 (which means, more than 5 and less than 100, or, more than 10 and less than 100), or more than 5 or 10 and less than 80, or more than 5 or 10 and less than 60, or more than 5 or 10 and less than 50, or more than 5 or 10 and less than 30, nucleotides in length, comprising deoxyribonucleotides and/or ribonucleotides.
NHF-binding aptamers may be prepared and/or identified using technology as developed for aptamer selection described, for example, in Ellington and Szostak, 1990, Nature 346:818-822; German et al., 1998, Anal. Chem. 70:4540-4545; Jayasena, 1999, Clinical Chem. 45(9):1628-1650; Jhaveri et al., 2000, Nature Biotechnol. 18(12):1293-1297; Nutio et al., 2003, J. Am. Chem. Soc. 125:4771-4778; Stojanovic et al., 2003, J. Am. Chem. Soc. 125:6085-6089; Tuerk and Gold, 1990, Science 249:505-510; Wang et al., Biochemistry 35:12338-12346; Michaud et al., 2003, J. Am. Chem. Soc. 125(28):8672-8679; Wilson and Szostak, 1999, Annual Rev. Biochem. 68:611-647; or Williams et al., 1997, Proc. Natl. Acad. Sci. U.S.A. 94:11285-11290.
In non-limiting examples, Systematic Evolution of Ligands by EXponential enrichment (“SELEX”) may be used (see, for example, Kopylov and Spiridonova, 2000, Molecular Biology 34(6):940-954, translated from Kopylov and Spiridonova, 2000, Molekulyamaya Biologiya 34(6):1097-1113). A synthetic oligonucleotide library may be screened for binding to a NHF target (see below), bound aptamers may be eluted and amplified by polymerase chain reaction (“PCR”), and one or more additional binding steps may be performed to obtain selectively tighter binding aptamers.
A NHF target, as the term is used herein, may be (i) an intact NHF molecule, (ii) a fragment of a NHF molecule where, if the NHF is a protein, the fragment contains at least 10 percent, 20 percent, 30 percent, 40 percent, 50 percent, 60 percent, 70 percent, 80 percent, or 90 percent of the intact molecule (biologic activity of the NHF need not be retained but desirably binding of the aptamer to the fragment correlates with binding of the aptamer to intact NHF); or (iii) an intact NHF or a NHF fragment bound to a carrier molecule (other than a carrier molecule which is part of a purification matrix), for example where the carrier molecule may be a detectable label or may be a stabilizing peptide. Any of the above-listed NHF targets may further be bound to a molecule or structure which is part of a matrix, such as an affinity matrix used for selection of aptamer or for assay purposes.
In particular non-limiting embodiments of the invention, two or more different NHF fragments are each used to select a binding nucleic acid (DNA or RNA) aptamer, and the two or more resulting selected aptamers are joined, optionally via a linking molecule, to form a heterodimer or heteromultimer (generically referred to herein as “heteromers” or as being “heteromeric”).
In particular, non-limiting embodiments of the invention, the monomeric aptamers selected pursuant to this section may have a binding affinity for the corresponding NHF target of between about 100 nM<Kd<10 μM.
As a specific, non-limiting example of the invention, two different aptamers that bind to arginine vasopressin (“vasopressin”) may be prepared as follows. As it is unlikely that two aptamers against vasopressin targeting different binding sites (“epitopes”) of vasopressin could be isolated using the intact vasopressin molecule, because of the strong possibility of an epitope dominance effect, the vasopressin molecule may be divided into two fragments and one or more aptamer that binds to each respective fragment may be prepared. For example, one fragment may be the commercially available cyclic peptide pressinoic acid (W), and the other a gly-7-9 fragment (E) (see
In order to provide for efficient capture of NHF, two or more aptamers, each having relatively lower affinity for a target NHF, may be joined, optionally via a linker, to produce a heteromeric aptamer with higher binding affinity than either of its component aptamers (see
In non-limiting embodiments, a linker, if present, may be optimized using a further selection procedure, as follows. Two individual binding regions may be used as primers, and the linker region may be a N40 library (see above). A reselection process (under gel-shift assay conditions, with low pM concentrations of vasopressin) may be used to optimize the binding strength and determine the best spacer. This type of sensor may be amplified by PCR, and potentially useful for real time PCR as the method of detection.
In particular non-limiting embodiments, individual aptamers may be combined in a head-to-head (5′-5′), head-to-tail (5′-3′) or tail-to-tail (3′-3′) fashion. The head-to-tail heteromers may be directly ordered from custom-synthesis companies, with various number and lengths of internal polyethylene glycol spacers or (dT)n regions inserted between the monomeric regions. Alternatively, combinations may be chemically synthesized from monomers containing matching reactive functionalities; for example the 3′ (tail) of one monomer could be functionalized with a thiol, while the 5′ (head) of another could be derivatized with an acrylate moiety.
Individual constructs may be tested for binding to NHF (e.g., vasopressin), for example using gel shift assays with radiolabeled NHF, fluorescence polarization, surface plasmon resonance (e.g. using Biacore technology) with NHF attached to a chip, and/or equilibrium gel filtration with radioactive NHF. In specific non-limiting embodiments, a heteromeric aptamer having a binding constant below 200 pM may be tested for selectivity over similar peptides. In the event that the heteromeric aptamer shows significant cross-reactivity, a counter-selection procedure may be performed in order to achieve satisfactory selectivity. As regards vasopressin, heteromeric aptamers desirably demonstrate the potential to be responsive in low-to-mid picomolar range of vasopressin concentrations and show satisfactory selectivity. In specific, non-limiting embodiments, the invention provides for a heteromeric, especially a heterodimeric, aptamer comprising a vasopressin binding aptamer as disclosed in Williams et al., 1997, Proc. Natl. Acad. Sci. U.S.A. 94:11285-11290, and further comprising a second vasopressin binding aptamer, for example an aptamer selected using pressinoic acid (amino acids 1-6 of arginine vasopressin) or gly-7-9, as shown in
The present invention further provides for the use of anti-NHF antibodies for use as capture agents, alone or in combination with aptamers including heteromeric aptamers as set forth above. The term “antibodies” as used herein refers to intact immunoglobulin molecules, portions of immunoglobulin molecules retaining ligand-binding affinity, and single chain antibodies.
In particular, non-limiting embodiments of the invention, antibodies to vasopressin may be prepared as follows. Vasopressin may be attached to Keyhole Limpet Hemocyanin or other suitable carrier molecule at one three different sites, i.e., as pressinoic acid connected at the C-terminus through NHS chemistry, as vasopressin connected at its N terminus through an N-hydroxy succinimate ester, or as vasopressin connected at its tyrosine through diazo chemistry, to produce “vasopressin immunogen”. The vasopressin immunogen may be used to generate a panel of monoclonal antibodies which may bind to different epitopes of vasopressin. Such monoclonal antibodies may then be used as is or derivatized, fragmented, or engineered to produce useful capture agents.
The present invention provides for NHF assay systems that utilize a capture agent which may be an aptamer e.g. a heteromeric aptamer, or antibody; in alternative embodiments more than one capture agent may be used. Although specific non-limiting examples provided below may relate to measurement of vasopressin, the assays described may be utilized to measure any NEF, using an aptamer that specifically binds to the NHF.
The assay may be performed using a sample obtained from a patient, including but not limited to a sample of blood or its components, urine, cerebrospinal fluid or tissue. The assay may be performed directly on the sample or indirectly, the latter meaning that the sample is processed prior to the assay. Non-limiting examples of processing include concentration of the sample itself (e.g. by centrifugation or filtration) or selective concentration of the NHF to be measured, for example using a chromatographic (e.g. SepPak C18 column) and/or an affinity method employing a capture agent such as an aptamer, heteromeric aptamer, or antibody. A schematic diagram of an affinity method is illustrated in
Real time PCR is an increasingly popular method for the detection of specific oligonucleotides in solution, and the concentration of aptamer may be coupled to the concentration of NHF (e.g., vasopressin). In specific non-limiting embodiments, aptamer or heteromeric aptamer may be added to a serum sample together with beads that would bind the aptamer tightly, where NEF and the bead would compete for aptamer binding. For example, the beads for the assay could be prepared (i.e., before exposure to patient sample) to comprise, at their surface, NHF (e.g., vasopressin) or an oligonucleotide complementary to at least a portion of the aptamer (the latter may provide the advantage of adjustable binding constants, and binding of aptamer to the bead takes it out of solution)). The NHF (e.g., vasopressin) in the serum sample would be expected to hinder the attachment of aptamer to beads, and the concentration of atpamer as determined through real time PCR would be directly proportional to the amount of NHF in the sample.
It should be noted that vasopressin in blood or plasma is subject to rapid degradation unless samples are collected in chilled containers and maintained at <4 C.
Aptamers and heteromeric aptamers as described above may be used in assays as set forth, for example, in Tombelli et al., 2005, Biosensors and Bioelectronics 20:2424-2434.
In one set of non-limiting embodiments, aptamers including heteromeric aptamers as described above may be used in chromatographic assay methods. As one specific, non-limiting example, a heterodimeric aptamer that binds to vasopressin may be linked to a support matrix; a sample, such as a patient serum sample, may then be exposed to the matrix so that vasopressin is retained on the matrix. The amount of vasopressin present may then be detected, for example using a method in which detectably (radioactively, fluorescently, etc.) labeled anti-vasopressin antibody is used to measure the amount of vasopressin bound to the matrix. Alternatively, detectably (radioactively, fluorescently, etc.) labeled vasopressin may be pre-bound to aptamer such as heteromeric aptamer linked to matrix, so that when sample is applied to the matrix, the labeled vasopressin may be displaced and eluted. The amount of labeled vasopressin either retained on the matrix or found in the eluate may then be measured.
In another set of non-limiting embodiments, aptamers including heteromeric aptamers as described above may be used in capillary electrophoresis assay methods. As one specific, non-limiting example, a heterodimeric aptamer that binds to vasopressin may be used as an affinity probe in capillary electrophoresis-based quantitative assay for a NHF (see, as cited in Tombelli et al. supra, German et al., 1998, Anal. Chem. 70:4540-4545; Kotia et al., 2000, Anal. Chem. 72:827-831). According to such methods, free versus bound aptamers such as heteromeric aptamers may be electrophoretically separated due to changes in electrophoretic properties which arise upon binding. Such aptamers may also be used in non-equilibrium capillary electrophoresis of equilibrium mixtures (see, as cited in Tombelli et al., supra, Berezovski et al., 2003, Anal. Chem. 75:1382-1386). The amount of NHF in the sample would be directly proportional to the amount of bound aptamer and indirectly proportional to the amount of unbound aptamer.
In yet another set of non-limiting embodiments, aptamers including heteromeric aptamers as described above may be used as optical sensors, for example in an assay in which NHF, such as vasopressin, in a sample (e.g., serum sample) may be detected by its ability to displace detectably labeled NHF bound to aptamer linked to microspheres (e.g. silica microspheres) in a fiber-optic biosensor system (see, as cited in Tombelli et al., supra, Lee and Walt, 2000, Anal. Biochem. 282:142-146).
In still further non-limiting sets of embodiments, aptamers including heteromeric aptamers as described above may be used as cantilever-based biosensors or as “signaling aptamers”, as described in Tombelli et al., supra.
Homogenous assays based on heterodimeric aptamers. Mono- and bis-fluorophoric assays, dye displacement assays, in both competitive and non-competitive format, may be used to assay NHF, such as, but not limited to, vasopressin (see
Heterogenous assays. In certain non-limiting embodiments, the present invention provides for heterogenous assays based upon reported RIA and ELISA assays except that polyclonal antibodies would be substituted by a NHF such as vasopressin. This would allow heat-equilibration of samples in the presence of biotin-labeled aptameric receptors which may result in significant reduction of assay time.
In other non-limiting embodiments, the present invention further provides for proximity ligation assays (see
The present invention uses the foregoing capture agents and assays to measure the level of NHF in an acute care setting. Detection of a change in NHF values from normal or acute shock levels may indicate that the patient is at risk for an imminent and catastrophic drop in blood pressure. In non-limiting embodiments of the invention, the change in NHF associated with a predictive value for a substantial decrease in blood pressure may be a change of at least about 20 percent, 30 percent, or 50 percent relative to normal or acute shock values for a particular NHF (including but not limited to published levels or levels in the patient or a suitable control).
As a specific, non-limiting example, in the case of vasopressin, the level of vasopressin associated with early shock in humans is approximately 22.7±2.2 pg/mL (Holmes et al., 2001, Chest 120:989-1002, citing Landry et al., 1997, Circulation 95:1122-1125), whereas the level of vasopressin associated with late shock is about 3.1±1.0 pg/mL for septic shock (Holmes et al., supra citing Landry et al., 1997, Circulation 95:1122-1125), <10 pg/mL after LVAD insertion (Holmes et al., supra, citing Argenziano et al., 1997, Circulation 96:II-286-290), 12.0±6.6 pg/mL after cardiopulmonary bypass (Holmes et al., supra, citing Argenziano et al. 1998, Thorac Cardiovasc. Surg. 116:973-980), median 3.3 pg/mL in children after cardiopulmonary bypass (Holmes et al., supra, citing Rosenzweig et al., 1999, Circulation 100:II 182-II 186), and 2.9±0.8 pg/mL in human organ donors (Holmes et al., supra, citing Chen et al. 1999, Circulation 100:II 244-II 246). Accordingly, the present invention provides, in non-limiting embodiments, for a method comprising using one or more capture agent, as set forth above, to measure the level of vasopressin in the serum of a subject, wherein a level below 20 pg/mL, or below 15 pg/mL, or below 10 pg/mL, or, especially for children, below 5 pg/mL, indicates that there is a substantial likelihood that the blood pressure of the patient is about to decrease to undesirable levels, or is already dangerously low and likely to be unresponsive to volume expansion. In specific non-limiting embodiments, an undesirable blood pressure is a systolic blood pressure of 90 mm Hg or less (or, in specific embodiments, 80 mm Hg or less, or 70 mm Hg or less) and/or a diastolic blood pressure of 60 mm Hg or less (or, in specific embodiments, 50 mm Hg or less, or 40 mm Hg or less). The present invention further provides for the additional step of inhibiting a decrease in blood pressure (meaning preventing or decreasing the magnitude of decrease) by administering a therapeutic agent, such as, but not limited to, low-dose continuous infusion of vasopressin or bolus administration of a partial agonist of the V1a receptor. In one specific non-limiting embodiment of the invention, a continuous low-dose infusion of between 0.01 and 0.04 U/min of vasopressin, for example until blood pressure is stabilized, may be administered.
Various publications are cited herein, the contents of which are hereby incorporated by reference in their entireties.
The present application claims priority to U.S. Provisional Application Ser. No. 60/755,311 filed on Dec. 30, 2005, the contents of which is incorporated herein in its entirety.
The subject matter of this application was developed at least in part using funds from a grant from the Long Range Navy and Marine Corps Science and Technology Program BAA, so that the United States Government has certain rights herein.
Number | Date | Country | |
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60755311 | Dec 2005 | US |
Number | Date | Country | |
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Parent | PCT/US06/62665 | Dec 2006 | US |
Child | 12144160 | US |