The invention encompasses a real time, point of care, diagnostic system, including a lateral flow test cassette, a data reader, and an application for processing test results and methods of diagnosis of a disease or virus.
Existing lateral flow immunochromatographic assays (LFIAs) have limitations in performance ang readability, among other things.
The invention encompasses a real-time, lateral flow assay test that include one or more labels and systems and methods for reading such test that provide improved detection of different capture regions on the test strips, improved assay testing speed, and improved assay measurement sensitivity.
The term “lateral flow assay test strip” encompasses both competitive and non-competitive types of lateral flow assay test strips. A lateral flow assay test strip generally includes a sample receiving zone and a detection zone, and may or may not have a labeling zone. In some implementations, a lateral flow assay test strip includes a sample receiving zone that is located vertically above a labeling zone, and additionally includes a detection zone that is located laterally downstream of the labeling zone.
The term “analyte” refers to a substance that can be assayed by the test strip. Examples of different types of analytes include organic compounds (e.g., proteins and amino acids), hormones, metabolites, antibodies, pathogen-derived antigens, drugs, toxins, and microorganisms (e.g., bacteria and viruses).
As used herein the term “label” refers to a substance that has specific binding affinity for an analyte and that has a detectable characteristic feature that can be distinguished from other elements of the test strip. The label may include a combination of a labeling substance (e.g., a fluorescent particle, such as a quantum dot or a quantum dot on a bead) that provides the detectable characteristic feature and a probe substance (e.g., an immunoglobulin) that provides the specific binding affinity for the analyte. In some implementations, the labels have distinctive optical properties, such as luminescence (e.g., fluorescence) or reflective properties, which allow regions of the test strip containing different labels to be distinguished from one another.
The term “reagent” refers to a substance that reacts chemically or biologically with a target substance, such as a label or an analyte.
The term “capture region” refers to a region on a test strip that includes one or more immobilized reagents.
The term “test region” refers to a capture region containing an immobilized reagent with a specific binding affinity for an analyte.
The term “control region” refers to a capture region containing an immobilized reagent with a specific binding affinity for a label.
In certain embodiments, the diagnostic test system includes a housing, a reader, a data analyzer, and a memory. The housing includes a port for receiving a test strip. When the test strip is loaded in the port, the reader obtains light intensity measurements from the test strip. In general, the light intensity measurements may be unfiltered or they may be filtered in terms of at least one of wavelength and polarization. The data analyzer computes at least one parameter from one or more of the light intensity measurements. A results indicator provides an indication of one or more of the results of an assay of the test strip. In some implementations, the diagnostic test system is fabricated from relatively inexpensive components enabling it to be used for disposable or single-use applications.
The housing may be made of any one of a wide variety of materials, including plastic and metal. The housing forms a protective enclosure for the reader, the data analyzer, the power supply, and other components of the diagnostic test system. The housing also defines a receptacle that mechanically registers the test strip with respect to the reader. The receptacle may be designed to receive any one of a wide variety of different types of test strips.
In various embodiments, each of the test strips is a non-competitive type of lateral flow assay test strip that supports lateral flow of a fluid sample along a lateral flow direction and includes a labeling zone containing a labeling substance that binds a label to a target analyte and a detection zone that includes at least one test region containing an immobilized substance that binds the target analyte. One or more areas of the detection zone, including at least a portion of the test region, are exposed for optical inspection by the reader. The exposed areas of the detection zone may or may not be covered by an optically transparent window.
In other embodiments, the test strips are competitive type of lateral flow assay test strips in which the concentrations of the label in the test region decreases with increasing concentration of the target analyte in the fluid sample. Some of these embodiments include a labeling zone, whereas others of these implementations do not include a labeling zone.
Some of these competitive lateral flow assay test strip embodiments include a labeling zone that contains a label that specifically binds target analytes in the fluid sample, and a test region that contains immobilized target analytes as opposed to immobilized test reagents (e.g., antibodies) that specifically bind any non-bound labels in the fluid sample. In operation, the test region will be labeled when there is no analyte present in the fluid sample. However, if target analytes are present in the fluid sample, the fluid sample analytes saturate the label's binding sites in the labeling zone, well before the label flows to the test region. Consequently, when the label flows through the test region, there are no binding sites remaining on the label, so the label passes by and the test region remains unlabeled.
In other competitive lateral flow assay test strip embodiments, the labeling zone contains only pre-labeled analytes (e.g., gold adhered to analyte) and the test region contains immobilized test reagents with an affinity for the analyte. In these embodiments, if the fluid sample contains unlabeled analyte in a concentration that is large compared to the concentration of the pre-labeled analyte in the labeling zone, then label concentration in the test region will appear proportionately reduced.
The reader includes one or more optoelectronic components for optically inspecting the exposed areas of the detection zone of the test strip. In some implementations, the reader includes at least one light source and at least one light detector. In some implementations, the light source may include a semiconductor light-emitting diode and the light detector may include a semiconductor photodiode. Depending on the nature of the label that is used by the test strip, the light source may be designed to emit light within a particular wavelength range or light with a particular polarization. For example, if the label is a fluorescent label, such as a quantum dot, the light source would be designed to illuminate the exposed areas of the detection zone of the test strip with light in a wavelength range that induces fluorescent emission from the label. Similarly, the light detector may be designed to selectively capture light from the exposed areas of the detection zone. For example, if the label is a fluorescent label, the light detector would be designed to selectively capture light within the wavelength range of the fluorescent light emitted by the label or with light of a particular polarization. On the other hand, if the label is a reflective-type label, the light detector would be designed to selectively capture light within the wavelength range of the light emitted by the light source. To these ends, the light detector may include one or more optical filters that define the wavelength ranges or polarizations axes of the captured light.
The data analyzer processes the light intensity measurements that are obtained by the reader. In general, the data analyzer may be implemented in any computing or processing environment, including in digital electronic circuitry or in computer hardware, firmware, or software. In some embodiments, the data analyzer includes a processor (e.g., a microcontroller, a microprocessor, or ASIC) and an analog-to-digital converter. In the illustrated embodiment, the data analyzer is incorporated within the housing of the diagnostic test system. In other embodiments, the data analyzer is located in a separate device, such as a computer, that may communicate with the diagnostic test system over a wired or wireless connection.
In accordance with aspects described in this specification, a diagnostic system includes a multiplexed lateral flow test cassette, a data reader, and a smart phone or tablet. The multiplexed lateral flow test cassette comprises a lateral flow immunochromatographic assay and can include a housing, a test strip, and a QR code or another identifier, which may be readable by a sensor, such as an optical sensor on a smartphone or other device. The lateral flow immunochromatographic assay is a biochemical test that measures (qualitatively/quantitatively) the presence of analyte molecules (such as the proteins on a SARS-CoV-2 virus) with the help of sensory molecules (based on quantum dots/nanoparticles/metal nanoclusters) on a platform (basically a membrane that controls the transport of the molecules) that displays a visual pattern (e.g., lines, circles, arrows, or dotted lines) when a successful test run occurs. This visual pattern on the test strip in combination with a machine-readable code (e.g., a QR code or similar code) that coated on the assay housing (and packaging) is used to determine the result of the diagnosis. The diagnostic system can also include accessories, including a fluid vial, a test swab, and a PBS buffer.
The data reader includes a data and power connector and a camera sensor (e.g., using a CCD or CMOS sensor) inside a body of the data reader. A light source (e.g., LEDs) is integrated with the camera sensor for illuminating the test cassette to enable the camera sensor to detect test results from the test strip of the lateral flow test cassette. In example implementations, the light source may emit ultraviolet light (e.g., around 350 nm wavelength) or visible light (e.g., around 400 nm wavelength). The data reader holds the test cassette in place and uses a combination of the camera sensor and light source to activate and read the spectral signature of the visual pattern on the test strip (e.g., quantum dots) and to read the machine-readable code. To hold the test cassette in place, the data reader can include a slot into which the test cassette or test strip can be inserted and which appropriately positions the test cassette so that the camera sensor can detect the visual pattern on the test strip. The use of a power connector avoids the need for battery power, which can help reduce the cost of the data reader and, along with using biodegradable housing materials, make the data reader more environmentally friendly and disposable.
The data reader communicates with a smartphone or other computing device. For example, the data reader can be connected to the charging port of a smartphone or tablet. The smartphone or tablet can both power the data reader and provide a communications channel. An app on the smartphone or tablet provides instructions for a human tester to perform the test, receives data from the reader and processes the data. The app can also instruct the tester to redo the test if the test is invalid or inconclusive, issue the test result, and provide further instructions if needed. The system can be used in a point-of-care scenario (e.g., administered by a medical professional) or as a home-test kit (e.g., not administered by a third party but rather self-administered). In some implementations, the system can do quantitative analysis to find the amount of analyte in the test strip using, for example, an advanced reader (an intense UV light source and a high resolution CMOS sensor), a lateral flow test cassette adapted for high resolution image analysis (e.g., using materials that limit auto-fluorescence and have more exposed surface for analysis), and advanced image analysis software.
In some implementations, the system can be implemented with a reader and/or smartphone that is more economical, lightweight, and easier to use for self-testing applications. Such an implementation may provide qualitative results, use visible light (e.g., 400 nm wavelength), and rely upon a sensor that is widely available (e.g., 720 p Galaxy Core GC0308 with fixed focus). In alternative implementations, the system can be implemented with components that are more suitable for point-of-care applications because, for example, they may need a medical professional to operate or may be less economical. These more complex implementations may provide quantitative results, which may be facilitated using a lateral flow cassette design where the area from the conjugate pad to the absorbent pad is exposed to the reader for quantitative analysis. The reader module may incorporate intense ultraviolet lighting (e.g., 350 nm wavelength) and a better CMOS sensor (e.g., a 16 MP CMOS, such as a Sony IMX214 or better with autofocus), And the smartphone app may be capable of performing quantitative image analysis.
In alternative implementations, a camera sensor on a smartphone or tablet can be used to detect the visual pattern on the test strip instead of using a separate data reader. Although potentially more complex because of variations in ambient lighting, angular positioning of the camera sensor relative to the test cassette, differences among camera sensors from various suppliers (e.g., differing spectral sensitivities, focal lengths, and color gamuts), and the like, the app can be programmed to process images detected by the camera sensor to normalize the spectral data received from the camera sensor for further processing of the spectral signature to obtain test results.
Implementations of the test strip of the diagnostic system can use quantum dots as bio-labels. By replacing the signal marker on the LFIAs from ubiquitously used colloidal gold with quantum dots, the sensitivity and specificity can be improved significantly [B. Liu et al, medRxiv, July 2020][J. Wang et al, ACS Omega 2019, 4, 6789-6795][D. Wang, Nature Biomedical Engineering, 2020, 5, 1150-1158]. Quantum dots also help achieve high performance. While colloidal gold nanoparticles are relatively large (>25 nm in size) biolabels used in sensing, the diagnostic system described in this specification can use novel biolabels (e.g., quantum dots and metal nanoclusters) that are much smaller (<5 nm). These biolabels can therefore, on an equivalent volume basis, offer more surface area. When conjugated with sensory proteins (i.e., antibodies), these biolabels can offer 3 orders of magnitude more binding sites for the analyte proteins (antibodies), which leads to highly improved sensitivity. The novel biolabels also offer various advantages such as higher luminosity, a gamut of distinct colors for multiplexing tests, consistency in manufacturing, longer shelf life, and orders of magnitude cost savings over colloidal gold.
Fluorescent nanoparticle labeled LFIAs have higher sensitivity and allow for in-situ monitoring compared with LFIAs that use colloidal gold (CG) for the bio-labels. [J. Wang et al, ACS Omega 2019, 4, 6789-6795] LFIAs labeled with fluorescent nanoparticles (e.g., quantum dots or fluorescent nanoclusters) have high quantum yields >35%, which enhances readability. In particular, test lines are easier to read and maintain readability much longer than CG-based LFIAs, which have low luminosity resulting from quantum yields <1%, making test lines difficult to read and which causes them to grow more faint with time. Fluorescent nanoparticle-labeled LFIAs also have a wide color gamut (potentially approaching or exceeding a million colors), which makes multiple analyte testing (multiplexing) possible. The limited color gamut (i.e., red and purple) of CG-based LFIAs makes multiplexing difficult. Furthermore, fluorescent nanoparticle-labeled LFIAs have a higher inherent stability over gold, which enhances durability, manufacturing consistency and shelf life of the LFIAs, and a lower cost of manufacture as compared to CG LFIAs.
The fluorescent nanoparticle labeled LFIAs can use quantum dot (such as CdSe/CdS tetrapod quantum dots)/metal (such as Ag) nanocluster technology that requires special manufacturing equipment (e.g., a microflow reactor) that prevents production of counterfeit test strips (i.e., because the quantum dot composition cannot be duplicated). The data reader can include a spectrometer for accurately detecting spectral signatures of the quantum dots and can be tuned to be sensitive only to quantum dots that produce specific spectral responses expected from the authorized quantum dots or can provide the spectral information for software analysis (e.g., by the app). The software in the app can be tuned to analyze the spectral information received from the data reader to be able to distinguish counterfeit test strips from authentic test strips. Thus, the test strips avoid problems with existing diagnostic tests, in which similar looking alternatives can be used to produce counterfeit test strips, as most of the components are readily available worldwide with little or no differentiation.
In certain embodiments, the invention includes multicolor optical coding for biological assays by embedding quantum dots into mesoporous and macroporous beads at precisely controlled ratios. Owing to their novel optical properties such as size-tunable emission and simultaneous excitation, quantum dots are ideal fluorophores for wavelength-and-intensity multiplexing. Kinetics study reveals that quantum dot doping of porous silica and polystyrene beads can be completed from seconds to minutes. Imaging and spectroscopic measurements indicate that the quantum dot-tagged beads are highly uniform and reproducible, yielding bead identification accuracies as high as 99.99% under favorable conditions. Hybridization studies demonstrate that the coding and target signals can be simultaneously read at the single-bead level. This spectral coding technology is expected to open new opportunities in gene expression studies, high-throughput screening, and medical diagnostics.
The modular diagnostic system can also enable use by testers who are not skilled in reading the lateral flow test, such as use in the home and by untrained users. Current LFIAs can require the tester to be skilled in reading the lateral flow test or to learn the skill by reading a manual. The modular diagnostic system includes a user-friendly app on a smartphone to guide the tester and a data reader device with electronics optimized to perform and analyze the lateral flow test preventing improper use of the test and loss of test result integrity. For example, a slot in the data reader can be shaped to prevent improper insertion of the test cassette by allowing insertion only in the proper orientation and the app can provide step-by-step instructions with graphics to guide the tester throughout the testing process.
In some implementations, the diagnostic system can be configured to offer covert testing capabilities, which prevents or limits an average tester's ability (and at least makes it more difficult for an expert in the art) to read the result of the test. Such covert testing can prevent faking of test results. Covert technology can be implemented by developing unique color-coded test strips which do not present results in the same manner as other test strips, and therefore it is not possible to deduce the outcome of the result of one LFIA based on the results of another LFIA. In particular, the quantum dots can be selected for different test strips such that the spectral response corresponding to a positive test result, for example, may be substantially or somewhat different between different test strips. The spectral response corresponding to a positive, negative, or multiplexed test result for a particular test strip can be encoded on the test cassette, which can be read by the data reader and decoded only by persons with authorized access to the decoding algorithm. For example, a key to reading the test strips can be decoded using a machine-readable (QR) code on the test cassette. Alternatively, the spectral response data and the information encoded on the test cassette may require decoding by a remote software platform, which can receive serialized spectral response data and QR code data, validate the test cassette, and interpret the test results based on the received data.
The test lines may further use a specific color or spectral pattern to indicate a positive or negative test result, such that the mere presence of a visible line cannot be interpreted as a positive or negative result. Rather, the result is only interpreted as a positive test result if a specific spectral pattern is detected.
The diagnostic system is economical and scalable to 109/year scale or more. The smartphone/tablets can be provided by the tester and are ubiquitous. The app for the smartphone/tablets can be downloaded from the popular app stores. The data reader is made using inexpensive/recyclable/biodegradable plastic and its components (camera module, LED light source, and spectrometer) are cheap to build/source. Finally, the lateral flow test cassettes are already being built economically in the billion unit/year scale.
The diagnostic system can also be made to be disposable and biodegradable. Besides the smartphone/tablet and app module of the diagnostic system, the other two modules are disposable and biodegradable. Biodegradable plastic can be used for the test cassette and data reader housing. The test strip in the test cassette uses biodegradable components except for the biolabels which, if made using non-hazardous quantum dots or metal clusters (or an acceptably low quantity of potentially hazardous quantum dots or metal nanoclusters), can be disposable. The data reader components (camera and LED light source) can also be made to be certified as disposable in household waste.
While this specification contains many implementation details, these should not be construed as limitations on the scope of the invention or of what may be claimed, but rather as descriptions of features specific to particular implementations of the invention. Certain features that are described in this specification in the context of separate embodiments can also be implemented in combination in a single embodiment. Conversely, various features that are described in the context of a single embodiment can also be implemented in multiple embodiments separately or in any suitable subcombination. Moreover, although features may be described above as acting in certain combinations and even initially claimed as such, one or more features from a claimed combination can in some cases be excised from the combination, and the claimed combination may be directed to a subcombination or variation of a subcombination.
Similarly, while operations are depicted in the drawings in a particular order, this should not be understood as requiring that such operations be performed in the particular order shown or in sequential order, or that all illustrated operations be performed, to achieve desirable results. In certain circumstances, multitasking and parallel processing may be advantageous. Moreover, the separation of various system components in the implementations described above should not be understood as requiring such separation in all implementations, and it should be understood that the described program components and systems can generally be integrated together in a single software product or packaged into multiple software products.
In various embodiments, POC rapid diagnostics of the invention use the LFIA platform. The LFIA platform is extremely versatile. In various embodiments, the detection of high-molecular-weight antigens requires an antibody pair where an antibody to one analyte epitope is labeled with a reporter, such as colloidal gold or quantum dots, and a capture antibody to a second epitope on the same analyte is immobilized on the lateral flow strip. In various embodiments, an antigen-capture sandwich format, the intensity of the signal at the test line is proportional to the concentration of the analyte. In various embodiments, the sandwich immunoassays are POC tests for infectious diseases that detect microbial products in clinical samples, e.g., the group A streptococcal cell wall carbohydrate. In various embodiments, the detection of low-molecular-weight analytes with a single antigenic determinant requires a competitive format. In these assays, the intensity of the test line is inversely proportional to the analyte concentration. Examples of assays using competitive formats include many immunoassays for the detection of drugs of abuse. In various embodiments, the LFIA format can be used for the detection of subject antibodies to target antigens. In this instance, the target antigen is immobilized on the strip, and the binding of patient antibody is detected by the use of a labeled reporter, such as a second antibody. Examples of serological assays in the LFIA format include tests for HIV-1/2 or hepatitis C virus.
In various embodiments, the performance of LFIA of the invention for antigen detection is dependent on the concentration of the analyte in a clinical sample. Analyte concentrations below the assay limit of detection for the test may produce a false-negative result.
Serum samples are obtained from patients with COVID-19 at different points during the disease course. The samples are used for the evaluation of a POC rapid test for detection of anti- SARS-CoV-2 antibodies.
Serum samples, IgM antibody is detected in samples using the claimed 2019-nCoV IgG/IgM Rapid Test. IgG antibody is also detected in samples using the 2019-nCoV IgG/IgM Rapid Test. Presence of either IgG or IgM is detected in samples using the 2019-nCoV IgG/IgM Rapid Test.
The antibody responses at different time points during the disease course after symptom onset are further evaluated using the found rapid tests. Anti-SARS-CoV-2 antibody is detected in 100% serum samples collected after 3 weeks of symptom onset using all rapid tests. The 2019-nCoV IgG/IgM Rapid Test detects high percentage and long duration of IgM in serum samples.
Thus, particular implementations of the invention have been described. Other implementations are within the scope of the following claims. In some cases, the actions recited in the claims can be performed in a different order and still achieve desirable results. In addition, the processes depicted in the accompanying figures do not necessarily require the particular order shown, or sequential order, to achieve desirable results. In certain implementations, multitasking and parallel processing may be advantageous.
This application claims the benefit of and priority to U.S. Provisional Application No. 63/185,836 filed May 7, 2021 , this disclosure is hereby incorporated by reference in its entirety.
Number | Date | Country | |
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63185836 | May 2021 | US |