Patent Application
20190314491
The present disclosure relates to antigens, nucleic acid molecules, and vaccine compositions for elicitation of an immune response, and more particularly for eliciting an immune response against a respiratory syncytial virus (RSV).
RSV has been recognized as the most common cause of lower respiratory tract infections in infants and young children. According to the report from World Health Organization, RSV is responsible for an estimated 199,000 deaths annually worldwide, and 99% of which occur in developing countries (Nair, H., et al., 2011). RSV can also infect and cause diseases in people of all ages, most severely in the elderly and in immuno-compromised individuals. Most children are infected at least once by age 2 and continue to be re-infected throughout life possibly due to incomplete immunity to RSV (Hall, C. B., et al., 1991).
Despite the burden of diseases caused by RSV, currently available prophylactic and therapeutic methods in RSV are very limited. For example, a humanized monoclonal antibody, palivizumab (SYNAGIS®; MedImmune, Inc.), comprises 95% human antibody sequence and 5% murine antibody sequences. Palivizumab can treat lower respiratory tract disease caused by RSV by binding to an epitope in the A antigenic site of the F subunit of RSV. However, palivizumab is licensed only for use in high-risk infants. In addition, it has been shown that the antiviral agent, ribavirin, has a therapeutic effect on RSV pneumonia and bronchiolitis, while ribavirin is used to treat RSV infection only in the pediatric population. Furthermore, ribavirin is accompanied by many side effects, e.g., insomnia, dyspnea, headache, nausea, muscle pains, emotional lability, hemolytic anemia, decreased hemoglobin, allergic reactions and liver problems. Moreover, ribavirin is not recommended for pregnant women due to its potential risk to the baby.
The immune effect of formalin-inactivated RSV (FIRSV) vaccine on infants and young children was evaluated in the late 1960s. Although FIRSV vaccine elicits high levels of antibodies in serum, it failed to prevent or treat the disease caused by RSV. On the contrary, those who had been received FIRSV vaccine during early infancy experienced more serious lower respiratory tract disease upon subsequent re-infection with RSV than unvaccinated individuals. Also, the current study revealed that FIRSV induced prominent alveolitis and perivasculitis in the lungs of RSV challenged mice.
A number of studies have been conducted for the development of RSV vaccines, including virus like particles (VLPs), subunits, and live-attenuated vaccines. Nevertheless, there is still no licensed vaccine against RSV infections. Due to a tremendous disease burden and limited prophylactic method, the demand for a safe and effective RSV vaccine is now greater than ever.
In view of the foregoing, the present disclosure provides an antigen comprising a recombinant respiratory syncytial virus (RSV) F protein to mimic the natural trimeric conformation of the RSV F protein.
The recombinant RSV F protein comprises an antigenic region flanked with an N-terminal heptad repeat (HRN) region and a C-terminal heptad repeat (HRC) region, wherein the antigenic region comprises one or more antigenic sites selected from the group consisting of site Ø, site II, and site IV, provided that if the antigenic region comprises more than one antigenic sites, then the antigenic sites are linked to each other by a linker, and the linker, on each occurrence, independently consists of 2 to 20 amino acids.
In an embodiment of the present disclosure, the antigenic region comprises site Ø, site II, and site IV. In another embodiment of the present disclosure, the HRN region is directly linked to site Ø, and the HRC region is linked to site IV by the linker.
According to a further aspect of the present disclosure, the present disclosure provides a nucleic acid molecule encoding the recombinant RSV F antigen described above.
According to another aspect of the present disclosure, the present disclosure provides a vaccine composition comprising an effective amount of the antigen or the nucleic acid molecule described above.
In another embodiment of the present disclosure, the vaccine composition comprising an effective amount of one or more of the antigens described above and a nucleic acid molecule or a plasmid encoding or expressing the antigen is administered to a subject in need thereof under a condition sufficient to prevent or ameliorate an RSV infection in the subject. The vaccine composition is administered in an amount sufficient to elicit an immune response against an RSV antigen, such as RSV F protein, in the subject.
The present disclosure provides a recombinant RSV F protein and a nucleic acid molecule encoding the recombinant RSV F protein. Also, the present disclosure provides a vaccine composition comprising an effective amount of the antigen or the nucleic acid molecule. The antigen, nucleic acid molecule and vaccine composition of the present disclosure can induce antibody responses specific for RSV and protect the subject from RSV infection without causing an adverse effect. Further, compared with the wild-type RSV F protein, the recombinant RSV F protein of the present disclosure is shorter in length and can result in a better expression level. As such, the antigen, nucleic acid molecule and vaccine composition of the present disclosure are relatively easy in mass production and more helpful in increasing the specificity of antibody identification and avoiding unnecessary reactions such as allergy.
The present disclosure can be more fully understood by reading the following detailed description of the embodiments, with reference made to the accompanying drawings, wherein:
The following examples are used to exemplify the present disclosure. A person of ordinary skills in the art can conceive the other advantages of the present disclosure, based on the specification of the present disclosure. The present disclosure can also be implemented or applied as described in different examples. It is possible to modify and/or alter the above examples for carrying out this disclosure without contravening its spirit and scope, for different aspects and applications.
As used herein, the singular forms “a,” “an” and “the” include plural referents unless the context clearly dictates otherwise. Thus, for example, reference to “an antigen” includes mixtures of antigens; reference to “a pharmaceutically acceptable carrier” includes mixtures of two or more such carriers, and the like. As such, the terms “a” (or “an”), “one or more,” and “at least one” can be used interchangeably herein.
Furthermore, “and/or” where used herein is to be taken as specific disclosure of the two specified features or components with or without the other. Thus, the term “and/or” used in a phrase such as “A and/or B” herein is intended to include “A and B,” “A or B,” “A (alone),” and “B (alone).”
The present disclosure provides an antigen comprising a recombinant RSV F protein. The recombinant RSV F protein comprises an antigenic region flanked with an HRN region and an HRC region, and the antigenic region comprises one or more antigenic sites selected from the group consisting of site Ø, site II, and site IV.
As descried herein, RSV has three surface glycoproteins, i.e., small hydrophobic (SH), attachment (G) and fusion (F), encoded by three consecutive genes (SH-G-F). The major target antigens of RSV vaccine development are RSV F and G as these are each capable of generating neutralizing antibodies as well as T cell responses. F is particularly attractive due to its considerable conservation among RSV isolates. Historically, there were two known major antigenic sites found on both the prefusion and postfusion conformations of RSV F associated with neutralizing (NT) activity. They were initially defined by binding to the murine monoclonal antibodies (mAbs) 1129 (site II) (Beeler, J. A. et al., 1989; Arbiza, J., et al., 1992) and 101F (site IV) (Wu, S. J., et al., 2007). Site II is known as the target for palivizumab which can reduce severe RSV disease in high-risk infants. McLellan et al. (McLellan, J. S., et al., 2013) isolated a mouse antibody, 5C4, which neutralized RSV potently but showed no binding to postfusion F protein. 5C4 shares these properties with two other antibodies isolated from immortalized peripheral blood mononuclear cells (PBMCs), D25 and AM22, which have been shown to neutralize RSV with 100 folds greater potency than palivizumab (McLellan, J. S., et al., 2013). D25 and AM22 target site Ø, a metastable antigenic site located on the surface of the prefusion RSV F trimer (Spits, H., et al., 2010; Beaumont, T., et al., 2012). The prefusion and postfusion crystal structures of F protein suggest that while sites II and IV are found on both structures, site Ø appear to be specific for the prefusion form (McLellan, J. S., et al., 2013).
The fusion peptide region of RSV F is located at the N terminus of the F1 subunit (Collins, P. L., et al., 1996) while the transmembrane segment contains two regions of 4,3-hydrophobic heptad repeats (HR), a sequence motif suggestive of coiled-coil structures (Chambers, P., et al., 1990; Singh, M., et al., 1999). These regions are denoted as HRN and HRC, respectively, and are separated by an intervening domain of about 270 amino acids. HRN and HRC form a trimeric hairpin-like structure, with the HRC regions packing in an antiparallel manner against the inner coiled-coil formed by HRN regions (Baker, K. A., et al., 1999).
In an embodiment of the present disclosure, the HRN region and the HRC region comprise amino acid sequences at least about 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% identical to the amino acid sequences of SEQ ID NO: 1 (MAVSKVLHLEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDK QLLPIVNKQS) and SEQ ID NO: 2 (NFYDPLVFPSDEFDASISQVNEKINQSLAFIRKSDELLHNVNAGK) and have the same functions as SEQ ID NO: 1 and SEQ ID NO: 2, respectively. In another embodiment of the present disclosure, the antigenic site comprised in the antigenic region may be selected from the group consisting of site Ø, site II, and site IV. The site Ø, site II, and site IV comprise amino acid sequences at least about 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% identical to the amino acid sequences of SEQ ID NO: 3 (KNYIDKQLLPIVNK), SEQ ID NO: 4 (NSELLSLINDMPITNDQKKLMSN), and SEQ ID NO: 5 (KNRGIIKTFS) and have the same functions as SEQ ID NO: 3, SEQ ID NO: 4, and SEQ ID NO: 5, respectively. In another embodiment of the present disclosure, if the antigenic region comprises more than one antigenic sites, then the antigenic sites are linked to each other by a linker, and the linker, on each occurrence, independently consists of 2 to 20 amino acids.
As used herein, the term “sequence identity” or, for example, comprising a “sequence 80% identical to” refers to the extent that sequences are identical on a nucleotide-by-nucleotide basis or an amino acid-by-amino acid basis over a window of comparison. Thus, a “percentage of sequence identity” may be calculated by comparing two optimally aligned sequences over the window of comparison, determining the number of positions at which the identical nucleic acid base (e.g., A, T, C, G, U) or the identical amino acid residue (e.g., Ala, Pro, Ser, Thr, Gly, Val, Leu, Ile, Phe, Tyr, Trp, Lys, Arg, His, Asp, Glu, Asn, Gln, Cys and Met) occurs in both sequences to yield the number of matched positions, dividing the number of matched positions by the total number of positions in the window of comparison (i.e., the window size), and multiplying the result by 100 to yield the percentage of sequence identity. Included are nucleotides and polypeptides having at least about 80%, 85%, 90%, 95%, 97%, 98%, 99% or 100% sequence identity to any of the reference sequences described herein (see, e.g., Sequence Listing), typically where the polypeptide variant maintains at least one biological activity or function of the reference polypeptide.
In an embodiment of the present disclosure, the antigenic region comprises at least one site Ø directly linked to the HRN region.
In another embodiment of the present disclosure, the antigenic region comprises one site Ø directly linked to the HRN region and linked to the HRC region by the linker (see, e.g.,
In another embodiment of the present disclosure, the antigenic region comprises four site Ø, and one of which is directly linked to the HRN region (see, e.g.,
In another embodiment of the present disclosure, the antigenic region comprises site Ø, site II, and site IV. In another embodiment of the present disclosure, the HRN region is directly linked to site Ø, and the HRC region is linked to site IV by the linker (see, e.g.,
In an embodiment of the present disclosure, the linker, on each occurrence, independently consists of 2 to 20 amino acids, and the linker may independently include, but not limited to, an amino acid sequence of any one of GSGS, GGGS, GGSG, SGSG and GG.
In an embodiment of the present disclosure, the antigen specifically binds to a 5C4, a D25, or an AM22 prefusion-specific antibody.
According to a further aspect of the present disclosure, the present disclosure provides a nucleic acid molecule encoding the antigen described above.
In an embodiment of the present disclosure, the nucleic acid molecule is codon optimized for expression in a prokaryotic cell. In another embodiment, the prokaryotic cell is an Escherichia coli cell. In yet another embodiment, the nucleic acid molecule comprises a nucleic acid sequence at least about 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% identical to the nucleic acid sequence of SEQ ID NO: 9.
In an embodiment of the present disclosure, the nucleic acid molecule is codon optimized for expression in a eukaryotic cell. In another embodiment, the eukaryotic cell is a yeast cell or a mammalian cell. In yet another embodiment, the mammalian cell is a human cell.
According to another aspect of the present disclosure, the present disclosure provides a vaccine composition comprising an effective amount of the antigen or the nucleic acid molecule described above.
In an embodiment, the vaccine composition may be used to induce an immune response to RSV in a subject. Thus, in several embodiments, a therapeutically effective amount of a vaccine composition comprising one or more of the antigens of the present disclosure, or a nucleic acid molecule or a plasmid encoding or expressing the antigen, can be administered to a subject to elicit an immune response to RSV.
In another embodiment, a therapeutically effective amount of a vaccine composition comprising one or more of the antigens of the present disclosure, or a nucleic acid molecule or a plasmid encoding or expressing the antigen, is administered to a subject in need under conditions sufficient to prevent or ameliorate an RSV infection in the subject. The vaccine composition is administered in an amount sufficient to elicit an immune response against an RSV antigen, such as RSV F protein, in the subject. In an embodiment of the present disclosure, the vaccine composition of the present disclosure may be administered intranasally or intramuscularly to the subject.
In an embodiment of the present disclosure, the vaccine composition may further comprise a pharmaceutically acceptable carrier and/or an adjuvant.
As used herein, the “pharmaceutically acceptable carrier” includes any and all solvents, dispersion media, antibacterial and antifungal agents, isotonic and absorption delaying agents and the like which may be appropriate for administration of the vaccine composition of the present disclosure. The pharmaceutically acceptable carrier useful for the present disclosure may include, but not limited to, a preservative, a suspending agent, a tackifier, an isotonicity agent, a buffering agent, and a humectant.
In another embodiment of the present disclosure, the adjuvant useful for the present disclosure may include, but not limited to, a CpG oligonucleotide and a hepatitis B core virus-like particle (HBc VLP).
In another embodiment, the vaccine composition administered to the subject comprises a mixture of the antigen and the adjuvant at a weight ratio of 10:1 to 1:10.
In another embodiment of the present disclosure, the vaccine composition promotes a Thl immune response.
Many examples have been used to illustrate the present disclosure. The examples below should not be taken as a limit to the scope of the disclosure.
Full length cDNA sequence of RSV F protein with optimized codon for Escherichia coli (E. coli) expression was synthesized (Genomics BioSci & Tech). Using this sequence as the PCR template, four gene fragments of RSV F protein were amplified, including nucleotides 457-633 which contain HRN and site Ø (SEQ ID NO: 10), nucleotides 760-849 which contain site II (SEQ ID NO: 11), nucleotides 1264-1314 which contain site IV (SEQ ID NO: 12), and nucleotides 1426-1560 which contain the C-terminal α-helix (HRC) (SEQ ID NO: 13).
These four PCR amplicons were linked by overlapping PCR and connected by a glycine-rich linker, such as GSGS, GGGS, GGSG, SGSG and GG, to form a constructed gene (named HRØ24), which was then inserted into the NcoI-XhoI restriction sites of pET28b tagged with 6-His at the C-terminus to obtain an HRØ24 plasmid.
The process of construction of HRØ, HRØ-3Ø and HBc plasmids were similar to that of the HRØ24 plasmid, except for the differences as follows.
For the construction of HRØ plasmids, two gene fragments of RSV F protein represented by SEQ ID NOs: 10 and 13 were amplified. These two PCR amplicons were then inserted into the NcoI/BamHI and EcoRI/XhoI restriction sites of pET28a tagged with 6-His at the C-terminus and connected by a glycine-rich linker to obtain an HRØ plasmid.
For the construction of HRØ-3Ø plasmids, two gene fragments of RSV F protein represented by SEQ ID NOs: 10 and 13 were amplified. Further, three site Ø fragments containing NheI/BamHI, BamHI/EcoRI, or EcoRI/HindIII restriction sites were created by PCR. These five PCR amplicons were then inserted into the NcoI/NheI/BamHI/EcoRI/HindIII/XhoI restriction sites of pET28a tagged with 6-His at the C-terminus and connected by a glycine-rich linker to obtain an HRØ-3Ø plasmid.
The resulting plasmids were transformed into E. coli BL21 (DE3) competent cells for protein expression. The schematic diagrams of HRØ24, HRØ, and HRØ-3Ø recombinant proteins were shown in
Full length cDNA sequence of HBc protein with optimized codon for Escherichia coli (E. coli) expression was synthesized (Genomics BioSci & Tech). Using this sequence as the PCR template, nucleotides 1-444 of HBc (SEQ ID NO: 14) was amplified and then inserted into the NcoI-XhoI restriction sites of pET28a tagged with 6-His at the C-terminus. The resulting plasmid was transformed into E. coli BL21 (DE3) competent cells for protein expression. The primers used for PCR in Examples 1 and 2 were represented by SEQ ID NOs: 15 to 34, shown in Table 1 below.
The recombinant RSV F protein-6-His and HBc-6-His were expressed in the transformed E. coli BL21 (DE3) obtained from Examples 1 and 2, and purified using nickel affinity chromatography, respectively. Eluted (with 500 mM imidazole, 50 mM NaH2PO4, 300 mM NaCl, pH 8.0) protein was buffer exchanged by gradient dialyzing 1 volume of sample against 200 volumes of dialyzing buffer (from 350 mM, 150 mM to 0 mM imidazole in 1×PBS) for 12h in each step. The dialyzed protein-6-His was concentrated using a centrifugal concentrator (10,000 MWCO, Sartorius) to reach a concentration about 1 mg/mL. Molecule size and purity of the protein were determined by SDS-PAGE.
A band of identical mobility was detected by immunoblotting using antibodies directed against His tag, and the results were shown in
8 μg of purified HBc VLPs in PBS were adsorbed onto a copper grid (300 mesh) for 3 min at room temperature. Then, the grids were dried gently using filter paper. After staining with 1% uranyl acetate aqueous solution for 30 seconds (s), the excess liquid was removed. The grids were examined with JEM-1400 electron microscope at 80 kV.
The HBc VLPs have been confirmed to form virus-like particles by TEM (
1. Preparation of RSV A2 Strain Stock
RSV A2 strain was obtained from ATCC. Propagation of the virus was performed in HEp-2 cells ATCC. Cells grown in 100 mm Petri dish (Thermo Scientific) up to 80% confluency were inoculated with RSV A2 at an m.o.i. (multiplicity of infection) of 0.2. Virus adsorption was carried out in serum free Dulbecco's Modified Eagle's medium (DMEM) in a CO2 incubator at 37° C. After 2 hours, medium was replaced with DMEM supplemented with 2% fetal bovine serum, and the dishes were incubated for another 48 to 72 hours. Supernatants which contain the virus were separated from cell debris by centrifugation at 3,000 rpm for 10 min. Virus was then concentrated by a centrifugal concentrator (100,000 MWCO, Sartorius).
2. RSV Plaque Assay
RSV virus titer was determined by plaque assay. Confluent monolayer of HEp-2 cells in 12-well plates were washed with 1×PBS and then infected with RSV A2 virus at various dilutions (10−3 to 10−7). After 2 hours of virus adsorption, supernatant was removed, and the cell monolayer was washed with 1×PBS, followed by overlaying with DMEM+2% fetal bovine serum+0.3% agarose. After 5 days incubation at 37° C. in a CO2 incubator, cells were fixed with 10% formalin and stained with 0.05% crystal violet for plaque quantification.
3. Vaccine Administration and RSV Challenge
Pathogen-free C57BL/6J female mice (6-8 weeks old) were randomly divided into several groups and immunized by the intranasal (i.n) route with vaccine candidates on day 0, 21, and 42 and challenged with 1×106 p.f.u. RSV on day 63 (
Before RSV challenge, mouse serum and bronchoalveolar lavage fluid (BALF) were collected from separate groups with identical dosing regimen on day 61. For RSV challenge, the mice were anesthetized with 1.5% isoflurane and then infected by intranasal inoculation of 1×106 p.f.u. RSV on day 63. After RSV challenge, body weights of the mice were monitored for 5 days. Finally, the mice were sacrificed on day 68, and the individual lungs were collected for virus load and histopathology experiments.
Serum and BALF collected from the immunized mice as described in Example 5 were tested for antibody responses by enzyme-linked immunosorbent assay (ELISA). Briefly, a 96-well plate was coated with 50 μL of purified HRØ24 (10 μg/ml) overnight at 4° C. The plate was blocked with 2% BSA for 1 hour at 37° C., and incubated with serial dilutions of serum samples (10−2 to 5.12×10−4) or BALF (10−1 to 1.28×10−3) in assay diluent (1% BSA, 0.05% Tween 20 in 1×PBS) for 2 hours at room temperature. Dilution curve was drawn for each sample, and endpoint titers were calculated as the reciprocal of the dilution producing an optical density that was 0.1 U greater than the background value (1/50 dilution of a pooled pre-immune serum or 1/5 dilution of a pooled naive BALF). IgG titers lower than 50 (negative samples) or secretory IgA (sIgA) titers lower than 5 were arbitrarily assigned as 50 or 5.
Referring to
To evaluate the efficacy when dosing the vaccine candidates 3 times, the immunized mice challenged with live RSV A2 strain as described in Example 5 were used.
1. Mice Body Weight Changes after RSV Challenge
Body weight change of mice following challenge infection is the most important indicator to assess vaccine protective efficacy. Referring to
Therefore, the present disclosure provides a better protection to prevent mouse weight loss and an accelerated recovery from initial body weight loss following live RSV challenge. These are evidence that anti-viral immunity elicited by the antigen of the present disclosure confer protection against live RSV A2 strain virus.
2. Lung Histopathology after RSV Challenge
For histological analysis, lung samples were fixed in 10% neutral buffered formalin for 24 hrs, embedded in paraffin blocks, sectioned into a thickness of 5 μm, and stained with hematoxylin and eosin (H&E).
Referring to
3. Lung Virus Load by Quantitative RT-PCR (qRT-PCR)
Control of lung viral loads is an important parameter in assessing vaccine efficacy since there would be a positive correlation between viral replication and clinical disease during natural or experimental infections (DeVincenzo, J. P., et al., 2005; Karron, R. A., et al., 1997). Therefore, qRT-PCR targeting RSV N gene was performed to quantify mRNA levels in lung tissues.
Lung extracts were prepared as homogenates using frosted glass slides. Total RNA was prepared by Qiagen RNeasy kit from homogenated samples. Two steps qRT-PCR was performed. The first-strand cDNA was amplified from 2 μg total RNA by SuperScript III Reverse Transcriptase (Invitrogen). The following primer pair was used for qRT-PCR: RSV-A-N-F730: GCAGGATTGTTTATGAATGCC (SEQ ID NO: 35) and RSV-A-N-R857: TCCACAACTTGTTCCATTTC (SEQ ID NO: 36) for RSV subgroup A viruses. Following optimization, reactions contained: each primer at 200 nM, 1×Power SYBR Green PCR Master Mix (ABI), 1 μL of cDNA, and water to 10 μL. Real-time PCR was performed using the ABI instrument with the following conditions: 95° C. for 10 min (1×), 95° C. for 15 sec, 60° C. for 60 sec (40×). DNA standards were used to verify the performance of each PCR run and to facilitate the quantification of experimental samples.
Referring to
Therefore, these results demonstrated that the antigen of the present disclosure can induce both systemic and mucosal antibody responses specific for RSV. Mice immunized with the antigen of the present disclosure showed protection against RSV without causing lung disease. The antigen of the present disclosure did not over-stimulate lymphocytes compared to FIRSV in a mouse model and offer as a potential safe RSV vaccine candidate.
Also, the sequence of the antigen of the present disclosure is relatively shorter than the wild type RSV F protein and is therefore relatively easy in mass production. Moreover, the antigen of the present disclosure retains only critical antigenic sites and is therefore more helpful in increasing the specificity of antibody identification and avoiding unnecessary reactions such as allergy than wild-type RSV F proteins.
The present disclosure has been described using exemplary embodiments in detail in the above. However, it is to be understood that the scope of the disclosure is not limited to the disclosed embodiments. On the contrary, it is intended to cover various modifications and similar rearrangement. The scope of the claims therefore should be accorded the broadest interpretation so as to encompass all such modifications and similar arrangements.
The present application claims the priority of U.S. Provisional Application Ser. No. 62/425,078 filed on Nov. 22, 2016 which is herein incorporated by reference in its entirety.
| Filing Document | Filing Date | Country | Kind |
|---|---|---|---|
| PCT/CN2017/112361 | 11/22/2017 | WO | 00 |
| Number | Date | Country | |
|---|---|---|---|
| 62425078 | Nov 2016 | US |
