The present disclosure relates to a respiratory status classifying method and a system thereof. More particularly, the present disclosure relates to a respiratory status classifying method and a system thereof of training physiological parameters and chest images to generate a respiratory status classifier.
With the increasing threat of respiratory-related diseases such as influenza and coronavirus pandemic (COVID-19) to people, medical resources are resulted to be tensioned and insufficient. However, if an effective clinical decision supporting tool or system can be used to assist the decision-making of the respiratory-related diseases so as to provide the timely cares to the patients, it would be beneficial to the patients, the healthcare system and the entire society.
For example, ARDS (Acute Respiratory Distress Syndrome) is a common disease in critically ill patients in the ICU (intensive care unit). Current medical evidences show that in addition to the immediate implementation of protective ventilation strategies, early use of muscle relaxants, prone ventilation and extracorporeal membrane oxygenation (ECMO) for patients with severe ARDS are all effective in reducing mortality. According to a large multinational study, about 1 in 10 critically ill patients will have ARDS, and as high as 1 in 4 patients on ventilators will have ARDS. A critically ill patient with ARDS will have the mortality rate as high as 40%. However, these patients may be ignored by the clinical medical team, and thereby the occurrences of ARDS cannot be recognized and diagnosed in time, so as not to implement the relevant diagnoses and treatment principles recommended by the evidence-based medicine. Therefore, immediately reminding the clinical medical team that the patient has occurred or is about to occur ARDS so as to implement relevant diagnosis and treatment is an important part of reducing ARDS.
Given the above, how to assist the decision-making of respiratory-related diseases through an effective clinical decision supporting tool or system and further provide timely treatments for patients, has become an important subject of concern today.
According to one aspect of the present disclosure, a respiratory status classifying method is for classifying as one of at least two respiratory statuses and includes a training's physiological parameter inputting step, a training's chest image inputting step, a characteristic physiological parameter generating step, a characteristic chest image generating step, a training step and a classifier generating step. The training's physiological parameter inputting step includes inputting a plurality of training's physiological parameters, which are a plurality of physiological parameters for training, and each of the training's physiological parameters corresponds to a corresponding one of the respiratory statuses. The training's chest image inputting step includes inputting a plurality of training's chest images, which are a plurality of chest images for training, and each of the training's chest images corresponds to a corresponding one of the respiratory statuses. The characteristic physiological parameter generating step includes processing at least a part of the training's physiological parameters, so as to generate a plurality of characteristic physiological parameters. The characteristic chest image generating step includes processing at least a part of the training's chest images, segmenting images of a left lung, a right lung and a heart from each of the training's chest images that are processed, and enhancing image data of the images being segmented, so as to generate a plurality of characteristic chest images. The training step includes training the characteristic physiological parameters and the characteristic chest images by at least one machine learning algorithm. The classifier generating step includes generating at least one respiratory status classifier after training by the at least one machine learning algorithm, so as to classify as one of the at least two respiratory statuses.
According to another aspect of the present disclosure, a respiratory status classifying system is for classifying as one of at least two respiratory statuses and includes at least one processor and at least one program storage medium. The at least one program storage medium is coupled to the processor and configured to provide a respiratory status classifier generating program. The processor based on the respiratory status classifier generating program is configured to: process at least a part of a plurality of training's physiological parameters, which are a plurality of physiological parameters for training, so as to generate a plurality of characteristic physiological parameters, wherein each of the training's physiological parameters corresponds to a corresponding one of the respiratory statuses; process at least a part of a plurality of training's chest images, which are a plurality of chest images for training, segment images of a left lung, a right lung and a heart from each of the training's chest images that are processed, and enhance image data of the images being segmented, so as to generate a plurality of characteristic chest images, wherein each of the training's chest images corresponds to a corresponding one of the respiratory statuses; train the characteristic physiological parameters and the characteristic chest images by at least one machine learning algorithm; and generate at least one respiratory status classifier after training by the at least one machine learning algorithm, so as to classify as one of the at least two respiratory statuses.
The present disclosure can be more fully understood by reading the following detailed description of the embodiment, with reference made to the accompanying drawings as follows:
The present disclosure will now be described more specifically with reference to the following embodiments. It is to be noted that the following descriptions of preferred embodiments of this disclosure are presented herein for the purposes of illustration and description only; it is not intended to be exhaustive or to be limited to the precise form disclosed.
In addition, the terms first, second, third, etc. are used herein to describe various elements or components, these elements or components should not be limited by these terms. Consequently, a first element or component discussed below could be termed a second element or component.
The training's physiological parameter inputting step 110 includes inputting a plurality of training's physiological parameters, which are a plurality of physiological parameters for training, and each of the training's physiological parameters corresponds to a corresponding one of the respiratory statuses. The training's chest image inputting step 120 includes inputting a plurality of training's chest images, which are a plurality of chest images (thoracic images) for training, and each of the training's chest images corresponds to a corresponding one of the respiratory statuses. The characteristic physiological parameter generating step 130 includes processing (i.e., pre-processing) at least a part of the training's physiological parameters, so as to generate a plurality of characteristic physiological parameters. The characteristic chest image generating step 140 includes processing (i.e., pre-processing) at least a part of the training's chest images, segmenting images of a left lung, a right lung and a heart from each of the training's chest images that are processed, and enhancing image data of the images being segmented, so as to generate a plurality of characteristic chest images. The training step 150 includes training the characteristic physiological parameters and the characteristic chest images by at least one machine learning algorithm. The classifier generating step 160 includes generating at least one respiratory status classifier (i.e., respiratory status model) after training by the at least one machine learning algorithm, so as to classify as one of the at least two respiratory statuses. Therefore, it is beneficial to simultaneously consider the characteristics of the physiological parameters and the chest images to generate a reliable respiratory status classifier.
In detail, the respiratory status classifying method 100 may be a clinical decision supporting method of an ARDS (Acute Respiratory Distress Syndrome) to implement a clinical decision supporting system of the ARDS, and the at least two respiratory statuses are respiratory statuses of the ARDS and a non-ARDS, respectively. Therefore, the respiratory status classifying method 100 is for establishing an AI (artificial intelligence)-assisting diagnosis model for the ARDS, and the purpose is to integrate information related to medical routines, assist front line staff, improve work efficiency and reduce workload. Using the physiological parameters and the chest images to establish an automatic data processing module has the functions of real-time collection, data cleaning automatically and structured storage. The inference engine providing the relevant information on the diagnosis and treatment of the ARDS is beneficial to timely give the appropriate treatment, improve the quality of diagnosis and treatment, enhance the treatment outcomes, and thereby reduce the mortality. Further, through the decision supporting system providing warnings and treatment recommendations, the interactive modules collecting the feedback information from the medical personnel, the information provided back for training to the model training module by the post-processing module can be cyclically used for the model training and application.
In the training's physiological parameter inputting step 110, the training's physiological parameters may include at least one clinical parameter, at least one ventilator parameter and at least one laboratory parameter of a patient in ICU (intensive care unit). The clinical parameter includes at least one of a body temperature, a respiration, a pulse, a systolic blood pressure, a blood oxygen and a urine output. The ventilator parameter includes at least one of a fraction of inspired oxygen (FiO2), a positive end-expiratory pressure (PEEP), a peak airway pressure (PAW), a mean airway pressure (MAP), a respiratory rate (RR) and a tidal volume (VT). The laboratory parameter includes at least one of a procalcitonin (PCT), a partial pressure of arterial carbon dioxide (PaCO2) and a partial pressure of arterial oxygen (PaO2). Therefore, it is beneficial to generate a reliable respiratory status classifier from the physiological parameters related to the respiratory statuses to be classified.
Furthermore, each of the clinical parameter, the ventilator parameter and the laboratory parameter may be an average value in a time period, which is between 12 hours and 72 hours (including 12 hours and 72 hours), and the time period of each of the clinical parameter and the ventilator parameter is smaller than the time period of the laboratory parameter. Therefore, it is advantageous in simultaneously achieving the accuracy of the classifier and the appropriate number of the characteristic values. In the 1st embodiment, the time period of each of the clinical parameter and the ventilator parameter is 24 hours, and the two average values in two respective and consecutive 24 hours are used, that is, a total of 48 hours is used. The time period of the laboratory parameter is 48 hours. Thus, the time period of each of the clinical parameter and the ventilator parameter is smaller than the time period of the laboratory parameter.
In the characteristic physiological parameter generating step 130, a number of the characteristic physiological parameters may be between 15 and 25 (including 15 and 25). Therefore, it is beneficial to generate an effective respiratory status classifier via a proper number of the characteristic values. In the 1st embodiment, after proceeding the characteristics engineering and selecting, the number of the characteristic physiological parameters may be 21 for model training and verifying.
In the training's chest image inputting step 120, each of the training's chest images may be an X-ray chest image, and at least a part of the training's chest images may be a Chest X-ray 14 dataset published by National Institutes of Health (NIH), which has 15 types (kinds) of chest symptoms labels (14 types of the chest symptoms labels plus no chest symptom found, so a total of 15 types) being labeled thereon. Accordingly, it is beneficial to the diversity and objectivity of chest image sampling.
In the characteristic chest image generating step 140, a ratio of a number of the characteristic chest images corresponding to the ARDS to a number of the characteristic chest images corresponding to the non-ARDS may be between 0.8 and 1.2 (including 0.8 and 1.2). Therefore, it is advantageous in generating a classifier for effectively screening the ARDS via the appropriate quantitative ratio. In the 1st embodiment, down sampling may be performed to make the ratio equal to 1.
Moreover, in the specific process of pre-processing the training's chest images, it includes converting the training's chest images from dcm format to png format, adjusting the training's chest images to a consistent size or normalizing, and removing black borders or removing blank part around. Next, the images of the left lung, the right lung and the heart in each of the processed chest images for training are segmented by a Mask R-CNN (regional convolutional neural network), and the images are cropped according to the segmentation. In this way, the characteristic chest image inputting to the image training module only includes the chest cavity, so as to avoid the image of the parts outside the chest cavity and below the diaphragm from interfering with the interpretation. Then, for example, the size of the X-ray image after image segmentation is adjusted from 1024 pixels*1024 pixels to 224 pixels*224 pixels, and then each image enhanced to 5 times via rotating and scale jittering are generated for the subsequent training step 150.
The steps 152, 154 are related to the training of the chest images by a method of transfer learning, and are divided into two stages of the steps 152, 154. The step 152 includes training the characteristic chest images by a CNN (convolutional neural network) of DenseNet-121. In detail, the step 152 includes training the pre-trained characteristic chest images of the Chest X-ray 14 dataset published by National Institutes of Health, and the characteristic chest images are labeled with the 15 types of the chest symptoms labels. Next, the CNN of DenseNet-121 with ImageNet as the initial weight is used to train each of characteristic chest images to classify, and the characteristic chest images have corresponding relationships with 15 types of the chest symptoms labels for extracting the features of the chest symptoms. The step 154 includes adaptively updating a last convolution block and a subsequent network weight of the CNN for fine-tuning a chest image classifier 226 according to relationships among the characteristic chest images, the at least two respiratory statuses and the 15 types of the chest symptoms labels. Specifically, the model weights of the trained Chest X-ray 14 dataset are reapplied to the classification of the ARDS to adaptively update the last convolutional block and the subsequent network weight of the CNN for fine-tuning the chest image classifier 226, which is one of the respiratory status classifiers in the subsequent classifier generating step 160 (e.g., the chest image classifier 226 in
In the step 152 of the training step 150, an initial learning rate of the characteristic chest images may be between 10−5 and 10−3 (including 10−5 and 10−3), and a decreasing rate per 10 epochs may be between 0.01 times and 0.1 times (including 0.01 times and 0.1 times). Accordingly, it is beneficial to effectively generate the chest image classifier 226. In the 1st embodiment, down sampling is performed to have the ratio of the number of the characteristic chest images corresponding to the ARDS to the number of the characteristic chest images corresponding to the non-ARDS being 1, and each of the number of the characteristic chest images corresponding to the ARDS and the number of the characteristic chest images corresponding to the non-ARDS is 360. The loss function is used with cross entropy, and the optimizer is used with Adam. The initial learning rate of the characteristic chest images is 10−4, and the decreasing rate per 10 epochs is 0.1 times.
With reference to
The respiratory status classifying method 100 may further include a user physiological parameter inputting step 170, a user chest image inputting step 180, the respiratory status classifying step 190 and a classification result displaying step 195. The user physiological parameter inputting step 170 includes measuring a plurality of user physiological parameters of a user (e.g., a patient), and inputting the user physiological parameters to the physiological parameter classifier 225 of the respiratory status classifiers. The user chest image inputting step 180 includes taking a user chest image of the user, and inputting the user chest image to the chest image classifier 226 of the respiratory status classifiers. The respiratory status classifying step 190 includes classifying the user as one of the respiratory statuses according to the user physiological parameters and the user chest image via the respiratory status classifiers. The classification result displaying step 195 includes displaying a classification result by a display 260. Accordingly, the assistance of the respiratory status classifiers with simultaneously considerations of the physiological parameters and the chest images is beneficial to timely give patients with appropriate treatments.
With reference to
In detail, the number of the at least one respiratory status classifier may be two, the two respiratory status classifiers are the physiological parameter classifier 225 and the chest image classifier 226, respectively. The processor 210 based on the respiratory status classifier generating program 224 is further configured to classify as one of the at least two respiratory statuses according to the average value of output probabilities of the physiological parameter classifier 225 and the chest image classifier 226.
The respiratory status classifying system 200 may further include physiological parameter storage mediums 271, 272, 273 and a chest image storage medium 280. The physiological parameter storage mediums 271, 272, 273 are coupled to the processor 210 and configured to provide the at least one clinical parameter, the at least one ventilator parameter and the at least one laboratory parameter, respectively, of the user physiological parameters of the user. The chest image storage medium 280 is coupled to the processor 210 and configured to provide the user chest image of the user. The at least one program storage medium 220 is further configured to provide the respiratory status classifiers (i.e., the physiological parameter classifier 225 and the chest image classifier 226), and the processor 210 based on the respiratory status classifiers is further configured to classify the user as one of the respiratory statuses according to the user physiological parameters and the user chest image via the respiratory status classifiers. Moreover, each of the program storage medium 220, the physiological parameter storage mediums 271, 272, 273 and the chest image storage medium 280 may specifically be a local or cloud non-transitory computer-readable storage medium, and each of the processor 210, the program storage medium 220, the physiological parameter storage mediums 271, 272, 273 and the chest image storage medium 280 may specifically be a single device, a part of a single device, or a plurality of devices.
Regarding other details of the respiratory status classifying system 200 of the 2nd embodiment, the contents of the respiratory status classifying method 100 of the 1st embodiment can be referred, and the details are not described again herein.
Although the present disclosure has been described in considerable detail with reference to certain embodiments thereof, other embodiments are possible. Therefore, the spirit and scope of the appended claims should not be limited to the description of the embodiments contained herein. It will be apparent to those skilled in the art that various modifications and variations can be made to the structure of the present disclosure without departing from the scope or spirit of the disclosure. In view of the foregoing, it is intended that the present disclosure cover modifications and variations of this disclosure provided they fall within the scope of the following claims.
Number | Date | Country | Kind |
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111118286 | May 2022 | TW | national |
This application claims priority to Taiwan Application Serial Number 111118286, filed May 16, 2022, which is herein incorporated by reference.