Patent Grant
10421979
This application is the U.S. national phase application, pursuant to 35 U.S.C. § 371, of PCT International Application Ser. No.: PCT/EP2016/058279, filed Feb. 11, 2016, designating the United States and published in English, which claims the benefit of European Patent Application No. 15425012.0, filed Feb. 11, 2015, entitled “Retargeted Herpesvirus with a Glycoprotein H Fusion,” the entire contents of which are incorporated herein by reference.
The present invention relates to the field of disease therapy. More specifically, it relates to a retargeted herpesvirus having a heterologous polypeptide fused to glycoprotein H, wherein the polypeptide targets specific cells, in particular diseased cells. It also relates to a nucleic acid comprising the genome of the herpesvirus of the invention, a vector comprising this nucleic acid and a cell comprising the nucleic acid or the vector. It further relates to killing cells using the herpesvirus of the invention and to methods for growing it in vitro.
The work leading to this invention has received funding from the European Research Council under the European Union's Seventh Framework Programme (FP7/2007-2013)/ERC grant agreement no 340060.
The burden of diseases and pathologies that cannot be treated, and less so cured, remains elevated, notwithstanding the high number of discoveries that in the past decades were translated into therapies or cures, and resulted in improvements to health and quality of life of humans. Eminent among these are numerous forms of cancers, in particular metastatic forms of cancers, that are treated with chemo-radio-therapy or biological medicaments, or combinations thereof, with very limited success.
In the past two decades there have been numerous efforts to employ herpes simplex viruses (HSVs) as oncolytic agents (o-HSVs) to treat cancers and metastases. Examples are genetically engineered HSVs, which carry deletions of some of the viral genes in order to attenuate the viruses, and confer some degree of cancer specificity. These viruses, exemplified by the virus named HSV1716, carry the deletion of one or both copies of the γ134.5 gene, whose product contrasts the host defence exerted by activation of PKR (protein kinase R). The HSVs carrying the deletion of the γ134.5 gene gain their partial cancer-specificity by the fact that non-cancer cells mount an innate response against them such that viral replication is hindered; by contrast, some of the cancer cells exhibit defects in the innate response, and thus allow the Δ γ134.5 HSV to replicate, and consequently to kill the cancer cells. A weakness of these o-HSVs is that cancer cells are heterogeneous, and the Δ γ134.5 HSV can only kill the fraction of cancer cells defective in PKR response. For safety reasons and to achieve an improved cancer-specificity, in some instances the Δ γ134.5 HSVs have been engineered to carry further deletions, exemplified by deletion of the UL 39 gene encoding the large subunit of ribonucleotide reductase, deletion of ICP 47, etc. These additional deletions result in a further attenuation of the o-HSVs.
To overcome the limited oncolytic effect consequent to attenuation, the o-HSVs carrying the deletion of γ134.5 gene, or combination of deletions, have been further modified to encode for a chemokine or cytokine. The two pertinent examples are T-VEC and M032. The o-HSV initially named Onco-Vex, and later renamed T-Vec, encodes GM-CSF, which favours the recruitment and maturation of monocytes and dendritic cells, and thus augments the response of the treated patient to its own tumor. The effect is an enhancement of the clearance of tumors by the immune system of the treated patient. In a phase III clinical trial, it improved the outcome of patients carrying metastatic melanoma. The second example is M032, a Δ γ134.5 HSV engineered to encode the sequence of IL12. This virus is predicted to favour a Th1 response. Recruitment of patients affected by glioblastoma for treatment with M032 in a phase1 trial is open. The major limits of the attenuated viruses are twofold, (i) their overall decreased replication, which represents an obstacle both in vivo, and with respect to the production of virus stocks large enough to yield efficacious inocula; and (ii) and their limited cancer-specificity due to their ability to enter and be sequestered by normal cells. These two limits are expected to be detrimental for the clinical efficacy of the treatment.
One approach to overcome these limits has been the genetic engineering of o-HSVs which exhibit a highly specific tropism for the cancer cells, and are otherwise not attenuated. This approach has been defined as retargeting of HSV tropism to cancers-specific receptors. HSV enters cells by fusion of its envelope with cell membranes; these are either the plasma membrane or the membrane bounding the endocytic vesicles. In the latter case, the attachment of the virus to the cell surface is followed by uptake of the virus by the cell into endocytic vesicles, and subsequently by fusion of the virion envelope with the membrane of the endocytic vesicle. The virion envelope is the most external structure of the HSV particle; it consists of a membrane which carries a number of virus-encoded glycoproteins that are activated in a cascade fashion to promote the fusion of the HSV envelope with cell membranes. These glycoproteins are gC and gB, which mediate a first attachment of the HSV particle to cell surface heparan sulphate. Thereafter, gD interacts with at least two independent, alternative cell surface receptors, named Nectin 1 and HVEM or HVEA. The binding site of Nectin 1 or of HVEM on gD differ. The interaction of gD with one of the two alternative receptors induces conformational changes in gD, which are thought to activate the downstream glycoproteins gH/gL (which form a heterodimer) and gB, in a cascade fashion. gB executes the fusion of the virion envelope with the cell membrane.
The retargeting of HSV to cancer-specific receptors entails the genetic modifications of gD, such that it harbours heterologous sequences which encode for a specific ligand. Upon infection with the recombinant virus which encodes the chimeric gD-ligand glycoprotein, progeny virions are formed which carry in their envelope the chimeric gD-ligand glycoprotein, in place of wt-gD. The ligand interacts with a molecule specifically expressed on the selected cancer cell, or on a group of cancers, and enables entry of the recombinant o-HSV in the selected cancer cell. Examples of ligands that have been successfully used for retargeting of HSV are IL13α, uPaR, a single chain antibody to HER2 and a single chain antibody to EGFR.
Previous studies have disclosed the construction of two recombinants named R-LM113 and R-LM249, both retargeted to the HER2 cancer receptor. To achieve a high degree of cancer specificity, the interaction of gD with its natural receptors Nectin 1 and HVEM was abolished through deletions of specific portions of the gD molecule. R-LM113 carries the deletion of the mature gD sequence corresponding to AA 6-38. R-LM249 carries the deletion of the core region of mature gD, corresponding to AA 61-218. In both viruses, the deleted sequences were replaced with the sequence encoding a single chain antibody (sc-Fv) derived from trastuzumab, a monoclonal antibody to HER2.
The retargeting through modification of glycoproteins other than gD has been attempted with gC. The inserted ligands were EPO and IL13. The virus carrying the gC-EPO chimera attached to cells expressing the EPO receptors; however this attachment did not lead to infectious entry; rather, the virus was degraded, possibly because it was taken in and ended up in lysosomes; all in all this strategy did not result in a viable retargeted virus. The gC-IL13 chimera was present in a virus that carried a second copy of IL13 in the gD gene. The virus was retargeted. Inasmuch as all viable retargeted HSV carry the retargeting ligand in gD, it cannot be inferred from those studies whether the gC-IL13 contributed or not to the retargeting to the IL13 alpha2 receptor.
The retargeting through genetic modifications of HSV gB has, to the knowledge of the inventors, never been described.
The retargeting through genetic modifications of gH/gL has, to the knowledge of the inventors, never been described, or even been attempted.
Pertinent to the present invention are the previous findings of Cairns et al. (Journal of Virology, June 2003, Vol. 77, No. 12, p. 6731-6742), summarized in the following. In an attempt to understand which role gL plays in the heterodimer gH/gL, the deletion of the gL gene was introduced in the herpesvirus named pseudorabiesvirus (PrV), a swine herpesvirus with high homology to the human HSV. The ΔgL PrV was not viable, since it could not infect, hence could not replicate. Serial blind passages of this virus gave rise to a spontaneous mutant, named PrV-ΔgLPass, which carried a chimeric glycoprotein made of the gD sequence fused to the N-terminus of gH. An essentially similar chimera was subsequently engineered also with the corresponding HSV genes. It carries the sequence encoding the signal peptide of gD and the ectodomain of mature gD (aa 1-308) fused at the N-terminus of the mature gH. Examples where gH was partially deleted did not give rise to any functional molecule. The property of the gD-gH glycoprotein, in which the entire ectodomain of gD was fused to the N-terminus of gH (named chimera 22 in Cairns et al., supra) is pertinent here. Of note, in wt virus, the activation exerted by the receptor-bound gD on gH/gL necessarily occurs through intermolecular signaling. The inventors refer to it as trans-signaling, as opposed to a signaling that occurs intramolecularly, herein referred to as cis-signaling. It is a surprising discovery of the present inventors that the activation of gH can occur in cis. This is the case for constructs R-VG803 and R-VG809, in which the sc-Fv activates the gH moiety in the chimera itself. The chimera 22 by Cairns et al., supra, was employed in complementation assays. Specifically, the chimera 22 rescued infection of a gD−/− gH+/+ virus, or of a gH−/− gD+ virus. It was not tested for complementation of a double deletion gD−/− gH−/− virus. There are two key differences between the previous report and the present finding. First, in the complementation assays (Cairns et al., supra), the wt-gD in the gH−/− gD+ virus may have activated in trans the gH moiety which is part of the gD-gH chimera. Conversely, the gD moiety, which is part of the chimera, may have activated in trans the wt-gH present in the gD−/− gH+ virions. In either case, the activation can only have taken place in-trans, as concluded by Cairns et al., supra. Evidence for cis-activation of the gD-gH chimera was not provided and would not have been considered possible by the skilled person. Secondly, irrespective of the activation mechanism, in the complementing system the gH activation was mediated by gD, which has a binding site for gH, and not by a heterologous ligand. These results did not establish or suggest that heterologous sequences (sequences other than viral sequences), herein named ligand, could be introduced at the N-terminus of gH and even less so whether a heterologous ligand introduced at the N-terminus of gH could serve the function of retargeting the HSV tropism to a cellular receptor capable to bind the engineered ligand.
The present inventors have shown that this can indeed be done and that gH can be modified to retarget herpesvirus.
In a first aspect, the present invention relates to a recombinant infectious herpesvirus comprising a heterologous polypeptide ligand fused to the N-terminus of mature glycoprotein H (gH) or of a truncated gH, or inserted into gH.
In a second aspect, the present invention relates to the recombinant infectious herpesvirus of the first aspect for use in the treatment of a disease.
In a third aspect, the present invention relates to a nucleic acid comprising the genome of the recombinant infectious herpesvirus of the first aspect or at least its heterologous polypeptide ligand fused to the N-terminus of mature gH or of a truncated gH, or inserted into gH.
In a fourth aspect, the present invention relates to a vector comprising the nucleic acid of the third aspect.
In a fifth aspect, the present invention relates to a cell comprising the recombinant infectious herpesvirus of the first aspect, the nucleic acid of the third aspect or the vector of the fourth aspect.
In a sixth aspect, the present invention relates to the recombinant infectious herpesvirus of the first aspect for medical use.
In a seventh aspect, the present invention relates to a method of killing a cell using the recombinant infectious herpesvirus of the first aspect.
In an eighth aspect, the present invention relates to an in vitro method for growing the recombinant infectious herpesvirus of the first aspect in cells.
In a preferred embodiment of the invention, the recombinant infectious herpesvirus has a glycoprotein D (gD) with an amino acid deletion resulting in the de-targeting of the herpesvirus from molecules or parts thereof accessible on the surface of a cell which are targeted by unmodified gD. Also or alternatively, the gD comprises a heterologous polypeptide ligand fused to the N-terminus of mature gD or of a truncated gD, or inserted into gD.
Before the present invention is described in detail below, it is to be understood that this invention is not limited to the particular methodology, protocols and reagents described herein as these may vary. It is also to be understood that the terminology used herein is for the purpose of describing particular embodiments only, and is not intended to limit the scope of the present invention which will be limited only by the appended claims. Unless defined otherwise, all technical and scientific terms used herein have the same meanings as commonly understood by one of ordinary skill in the art.
Preferably, the terms used herein are defined as described in “A multilingual glossary of biotechnological terms: (IUPAC Recommendations)”, Leuenberger, H. G. W, Nagel, B. and Kölbl, H. eds. (1995), Helvetica Chimica Acta, CH-4010 Basel, Switzerland).
Several documents are cited throughout the text of this specification. Each of the documents cited herein (including all patents, patent applications, scientific publications, manufacturer's specifications, instructions etc.), whether supra or infra, is hereby incorporated by reference in its entirety. Nothing herein is to be construed as an admission that the invention is not entitled to antedate such disclosure by virtue of prior invention.
In the following, the elements of the present invention will be described. These elements are listed with specific embodiments, however, it should be understood that they may be combined in any manner and in any number to create additional embodiments. The variously described examples and preferred embodiments should not be construed to limit the present invention to only the explicitly described embodiments. This description should be understood to support and encompass embodiments which combine the explicitly described embodiments with any number of the disclosed and/or preferred elements. Furthermore, any permutations and combinations of all described elements in this application should be considered disclosed by the description of the present application unless the context indicates otherwise.
Throughout this specification and the claims which follow, unless the context requires otherwise, the word “comprise”, and variations such as “comprises” and “comprising”, are to be understood to imply the inclusion of a stated integer or step or group of integers or steps but not the exclusion of any other integer or step or group of integer or step. As used in this specification and the appended claims, the singular forms “a”, “an”, and “the” include plural referents, unless the content clearly dictates otherwise.
In a first aspect, the present invention relates to a recombinant infectious herpesvirus comprising a heterologous polypeptide ligand fused to the N-terminus of mature glycoprotein H (gH) or of a truncated gH, or inserted into gH (also referred to herein as modified gH).
The term “recombinant” herpesvirus as used herein refers to a herpesvirus that has been genetically engineered to express a heterologous protein. Methods of creating recombinant herpesviruses are well known in the art, see for example Sandri-Goldin et al., Alpha Herpesviruses: Molecular and Cellular Biology, Caister Academic Press, 2006.
The term “infectious” herpesvirus as used herein refers to a herpesvirus which is capable of entering a target cell and of producing proteins encoded by the viral genome, including heterologous proteins comprised therein. In a preferred meaning, the herpesvirus is also capable of producing progeny virus in the entered target cell.
The term “herpesvirus” as used herein refers to a member of the herpesviridae family of double-stranded DNA viruses, which cause latent or lytic infections. Herpesviruses all share a common structure: all herpesviruses are composed of relatively large double-stranded, linear DNA genomes encoding 100-200 genes encased within an icosahedral protein cage called the capsid which is itself wrapped in a protein layer called the tegument containing both viral proteins and viral mRNAs and a lipid bilayer membrane called the envelope. This whole particle is also known as a virion.
The term “heterologous” polypeptide as used herein with respect to herpesvirus refers to a polypeptide that is not native to the herpesvirus. At least it is not native to the particular herpesvirus strain used, but in a preferred meaning it is also not native to any other herpesvirus. The term also excludes proteins derived from a herpesvirus, which are genetically altered, i.e. such genetically altered herpesvirus proteins are not heterologous polypeptides within the defined meaning of the term. In a particular embodiment, the heterologous polypeptide ligand is not herpesvirus glycoprotein D (gD) or a fragment thereof that specifically binds a cellular ligand of gD.
The term “fused” or “fusion” as used herein refers to the linking of two different polypeptides by peptide bonds, either directly or indirectly via one or more peptide linkers. In a preferred embodiment relating to gH, the heterologous polypeptide ligand is fused to the N-terminus of mature gH or of a truncated mature gH. In a preferred embodiment relating to gD, the heterologous polypeptide ligand is fused to the N-terminus of mature gD or of a truncated mature gD.
A peptide linker has a length between 1 and 30 amino acids, preferably 5 to 15 amino acids, more preferably 8-12 amino acids, and may consist of any amino acids. Preferably, it comprises the amino acid(s) Gly and/or Ser, more preferably it comprises at least 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29 or 30 amino acids selected from the group consisting of Gly and Ser. Most preferably, it consists of the amino acids Gly and/or Ser. Linkers based on Gly and Ser are preferable because they provide flexibility, good solubility and resistance to proteolysis.
The term “mature” glycoprotein as used herein refers to a glycoprotein lacking the N-terminal signal peptide. With respect to gH, it preferably refers to gH lacking amino acids 1-18 of the gH according to SEQ ID NO: 1 or a corresponding region of a homologous gH. With respect to gD, it preferably refers to gD lacking amino acids 1-25 of the gD according to SEQ ID NO: 4 or a corresponding region of a homologous gD.
The term “truncated” glycoprotein as used herein refers to a herpesvirus glycoprotein, preferably a mature herpesvirus glycoprotein lacking an N-terminal portion. In a particular embodiment, gH is truncated up to (i.e. the truncation including) any of amino acids 18 to 88 (i.e. 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87 or 88) in particular amino acid 23, 24, 48, 50, or 88 of the gH according to SEQ ID NO: 1 (a truncation up to amino acid 18 results in the mature gH). In another particular embodiment, gD is truncated up to (i.e. the truncation including) any of amino acids 25 to 64 (i.e. 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63 or 64), in particular amino acid 64 of the gD according to SEQ ID NO: 4 (a truncation up to amino acid 25 results in the mature gD).
The term “glycoprotein H” or “gH” as used herein refers to a 110 kDa virion envelope glycoprotein that plays a role in herpesvirus infectivity. In particular, in forms a heterodimer with herpesvirus glycoprotein L. Herein it is represented by gH of HSV-1 according to SEQ ID NO: 1 (gH precursor or full-length gH, which includes the signal sequence; the mature gH lacks this signal sequence, i.e. residues 1-18 of SEQ ID NO: 1). However, gH homologues are found in all members of the herpesvirus family and, as such, homologous sequences may vary (see also below for preferred homologues). Thus, HSV-1 gH homologues are also encompassed by the invention. In a preferred embodiment, such HSV-1 gH homologues have an amino acid sequence that is at least 70%, 80%, 85%, 90%, 95%, 96%, 97%, 98% or 99% identical to the sequence according to SEQ ID NO: 1 and they retain, preferably as wildtype (i.e. unmodified), the capability of forming a heterodimer with herpesvirus glycoprotein L. Among at least human and monkey herpesviruses, gH is conserved. Crystal structures of the extracellular portion of three gH proteins are known: one from the alphaherpesvirus HSV-2 gH (Chowdary et al., Nat Struct Mol Biol 2010 17:882-888), one from the swine PrV (Backovic et al., PNAS 2012 107(52) 22635-22640), also an alphaherpesvirus, and one from Epstein-Barr virus (Matsuura et al., PNAS, 2010 107(52) 22641-22646), a gamma herpesvirus. They are substantially similar, for example, an organization in structurally similar domains is present in all crystal structures.
The term “gD” or “glycoprotein D” refers to a component of the virion envelope of herpesvirus which plays an essential role in HSV entry into cells. gD binds to a cellular molecules, namely HVEM and Nectin-1 following the initial interaction of herpesvirus glycoproteins gC and gB with heparan sulfate proteoglycans. Herein it is represented by gD of HSV-1 according to SEQ ID NO: 4 (gD precursor or full-length gD), which includes the signal sequence; the mature gD lacks this signal sequence, i.e. residues 1-25 of SEQ ID NO: 4). However, homologous gD (see also below for preferred homologues) are found in other members of the herpesvirus family and, as such, homologous sequences may vary. Thus, HSV-1 gD homologues are also encompassed by the invention. In a preferred embodiment, such HSV-1 gD homologues have an amino acid sequence that is at least 70%, 80%, 85%, 90%, 95%, 96%, 97%, 98% or 99% identical to the sequence according to SEQ ID NO: 4 and they retain, as wildtype (i.e. unmodified), the capability of binding to HVEM and Nectin-1 or, more general, to cellular receptors enabling the gD homolog to promote, in a cascade fashion, fusion of the viral envelope with cell membranes.
In a preferred embodiment, the herpesvirus is selected from the group consisting of Herpes Simplex Virus 1 (HSV-1), Herpes Simplex Virus 2 (HSV-2), Varicella Zoster Virus (human herpesvirus 3 (HHV-3)), swine alphaherpesvirus Pseudorabievirus (PRV), Chimpanzee alpha1 herpesvirus (ChHV), Papiine herpesvirus 2 (HVP2), Cercopithecine herpesvirus 2 (CeHV2), Macacine herpesvirus 1 (MHV1), Saimiriine herpesvirus 1 (HVS1), callitrichine herpesvirus 3 (CalHV3), Saimiriine herpesvirus 2 (HVS2), Bovine herpesvirus 1 (BoHV-1), Bovine Herpesvirus 5 (BoHV-5), Equine herpesvirus 1 (EHV-1), Equine herpesvirus 2 (EHV-2), Equine herpesvirus 5 (EHV-5), Canine herpesvirus 1 (CHV), Feline herpesvirus 1 (FHV-1), Duck enteritis virus (DEV), Fruit bat alphaherpesvirus 1 (FBAHV1), Bovine herpesvirus 2 (BoHV-2), Leporid herpesvirus 4 (LHV-4), Equine herpesvirus 3 (EHV-3), Equine herpesvirus 4 (EHV-4), Equine herpesvirus 8 (EHV-8), Equid herpesvirus 9 (EHV-9), Cercopithecine herpesvirus 9 (CeHV-9), Suid herpesvirus 1 (SuHV-1), Marek's disease virus (MDV), Marek's disease virus serotype 2 (MDV2), Falconid herpesvirus type 1 (FaHV-1), Gallid herpesvirus 3 (GaHV-3), Gallid herpesvirus 2 (GaHV-2), Lung-eye-trachea disease-associated herpesvirus (LETV), Gallid herpesvirus 1 (GaHV-1), Psittacid herpesvirus 1 (PsHV-1), Human herpesvirus 8 (HHV-8), Human herpesvirus 4 (HHV-4), Chelonid herpesvirus 5 (ChHV5), Ateline herpesvirus 3 (AtHV3) or Meleagrid herpesvirus 1 (MeHV-1). These viruses all have at least a gH with clear homology to the gH of HSV-1/-2. In a more preferred embodiment, the herpesvirus is HSV-1 or HSV-2.
The term “inserted” or “insertion” as used herein refers to the incorporation of one polypeptide into another polypeptide, wherein the incorporated polypeptide is linked to the host polypeptide by peptide bonds, either directly or indirectly via one or more peptide linkers, more specifically via an N-terminal and/or C-terminal peptide linker with respect to the insert. Although the fusion of a peptide ligand to mature gH/gD can also be seen as an insertion into the gH/gD precursor according to SEQ ID NOs 1/4, respectively, such an insertion is herein termed as an N-terminal fusion since the virion carries the mature glycoprotein. Thus, the term “insertion” preferably refers to an insertion into a mature glycoprotein, in particular gH and gD.
In a preferred embodiment, the heterologous polypeptide ligand is inserted within the N-terminal region of gH starting at any one of amino acids 19 to 23 (preferably 19) and ending at any one of amino acids 48 to 88 (preferably 88), preferably starting at amino acid 19 and ending at amino acid 88, starting at amino acid 61 and ending at amino acid 65, starting at amino acid 69 and ending at amino acid 72, or starting at amino acid 74 and ending at amino acid 80; or starting at amino acid 116 and ending at amino acid 136 of the gH according to SEQ ID NO: 1 or a corresponding region of a homologous gH. The ranges 61-65, 69-72 and 74-80 are thought to be particularly useful since they represent exposed-loop regions of the gH H1A domain and therefore represent insertion points that retain the structural integrity of the gH H1A domain. In a more preferred embodiment, it is inserted within the N-terminal region of gH starting at amino acid 19 and ending at amino acid 50 of the gH according to SEQ ID NO: 1 or a corresponding region of a homologous gH. In an even more preferred embodiment, it is inserted within the N-terminal region of gH starting at amino acid 19 and ending at amino acid 48 of the gH according to SEQ ID NO: 1 or a corresponding region of a homologous gH. In another more preferred embodiment, it is inserted within the N-terminal region of gH starting at amino acid 23 and ending at amino acid 48 of the gH according to SEQ ID NO: 1 or a corresponding region of a homologous gH. In all these embodiments, the amino acids defining start and end of a region are included in the region, i.e. the insertion may by either N-terminal or C-terminal of the start or end amino acid. In the particular case of an insertion N-terminal of residue 19 of SEQ ID NO: 1, the insertion can also be seen as a fusion to the N-terminus of mature gH. Thus, to distinguish the terms “insertion” and “fusion” clearly, this particular case is preferably excluded from the possible insertions and falls under a fusion to the N-terminus of mature gH as described.
Furthermore, in all these embodiments, said region may be replaced by the insertion. The particular case of the insertion replacing a region comprising residue 19 of SEQ ID NO: 1, the insertion can also be seen as a fusion to the N-terminus of a truncated mature gH. Thus, to distinguish the terms “insertion” and “fusion” clearly, this particular case is preferably excluded from the possible insertions and falls under a fusion to the N-terminus of a truncated mature gH as described.
In the most preferred embodiment, the ligand is inserted between amino acid 23 and amino acid 24 of the gH according to SEQ ID NO: 1 or a corresponding region (in this case corresponding to said amino acids 23 and 24) of a homologous gH.
In a particular embodiment, one or more gH amino acids of the N-terminal region as specified above are deleted. In a related embodiment, gH is truncated as specified above.
The term “corresponding region of a homologous gH” refers to a region of a gH which aligns with a given region of HSV-1 gH (preferably the region of the insertion as defined above) according to SEQ ID NO: 1 when using the Smith-Waterman algorithm and the following alignment parameters: MATRIX: BLOSUM62, GAP OPEN: 10, GAP EXTEND:
0.5. In case only a part or parts of the given region of HSV-1 gH aligns with the sequence of a homologous gH using above algorithm and parameters, the term “corresponding region of a homologous gH” refers to the region which aligns with the part(s) of the given region of HSV-1 gH. In other words, in this case the region in the homologous gH, in which the ligand is inserted or which is replaced by the ligand, comprises only the amino acids which align with the part(s) of the given region of HSV-1 gH. Also, in the same case, the term “corresponding region of a homologous gH” may refer to a region which is flanked by corresponding flanking sequences, wherein corresponding flanking sequences are sequences of the homologous gH which align, using above algorithm and parameters, with sequences flanking the above given region (preferably the region of the insertion as defined above) of HSV-1 gH. These flanking sequences of HSV-1 gH are at least 5, 6, 7, 8, 9, 10, 15, 20, 30, 40 or 50 amino acids long (the flanking sequence at the N-terminus of gH, i.e. N-terminal any of amino acid residue 19 to 23 according to SEQ ID NO: 1 may be shorter, i.e. as specified but up to 18, 19, 20, 21, or 22 amino acid residues long) and align with the sequence of a homologous gH using above algorithm and parameters.
The homologous gH is preferably gH of Herpes Simplex Virus 2 (HSV-2), Varicella Zoster Virus (human herpesvirus 3 HHV-3), swine alphaherpesvirus Pseudorabievirus (PRV), Chimpanzee alpha1 herpesvirus (ChHV), Papiine herpesvirus 2 (HVP2), Cercopithecine herpesvirus 2 (CeHV2), Macacine herpesvirus 1 (MHV1), Fruit bat alphaherpesvirus 1 (FBAHV1), Saimiriine herpesvirus 1 (HVS1), callitrichine herpesvirus 3 (CalHV3), Saimiriine herpesvirus 2 (HVS2), Bovine herpesvirus 1 (BoHV-1), Bovine Herpesvirus 5 (BoHV-5), Equine herpesvirus 1 (EHV-1), Equine herpesvirus 2 (EHV-2), Equine herpesvirus 5 (EHV-5), Canine herpesvirus 1 (CHV), Feline herpesvirus 1 (FHV-1), Cercopithecine herpesvirus 9 (CeHV-9), Duck enteritis virus (DEV, AnHV-1), Bovine herpesvirus 2 (BoHV-2), Leporid herpesvirus 4 (LHV-4), Equine herpesvirus 3 (EHV-3), Equine herpesvirus 4 (EHV-4), Equine herpesvirus 8 (EHV-8), Equid herpesvirus 9 (EHV-9, Marek's disease virus (MDV), Marek's disease virus serotype 2 (MDV2), Gallid herpesvirus 3 (GaHV-3), Gallid herpesvirus 2 (GaHV-2), Lung-eye-trachea disease-associated herpesvirus (LETV), Gallid herpesvirus 1 (GaHV-1), Psittacid herpesvirus 1 (PsHV-1), Human herpesvirus 8 (HHV-8), Human herpesvirus 4 (HHV-4), Falconid herpesvirus type 1 (FaHV-1), Chelonid herpesvirus 5 (ChHV5), Ateline herpesvirus 3 (AtHV3) or Meleagrid herpesvirus 1 (MeHV-1). These herpesviruses and HSV-1 have gH sequences that are highly conserved with respect to that of HSV-1. More preferably the homologous gH is gH of Herpes Simplex Virus 2 (HSV-2), Chimpanzee alpha1 herpesvirus (ChHV), Papiine herpesvirus 2 (HVP2), Cercopithecine herpesvirus 2 (CeHV2), Macacine herpesvirus 1 (MHV1), Fruit bat alphaherpesvirus 1 (FBAHV1), Bovine herpesvirus 2 (BoHV-2) or Leporid herpesvirus 4 (LHV-4). Most preferably the homologous gH is gH of Herpes Simplex Virus 2 (HSV-2).
In another embodiment, the heterologous polypeptide ligand is inserted N-terminally of the H1A domain of gH. N-terminally inserted in this respect does not mean adjacent to the H1A domain on the N-terminal side, but anywhere on the N-terminal side of the H1A domain. The H1A domain of gH is a subdomain of the H1 domain of gH. The H1 domain extends from amino acid 49 to 327 of the gH protein according to SEQ ID NO: 1, and the H1A domain extends from amino acid 49 to 115 of the gH protein according to SEQ ID NO: 1 (Chowdary et al., 2010). Many gH proteins do have a H1A domain, which can be identified by sequence alignment with SEQ ID NO: 1 or by structural similarity within the H1 domain as is the case for gH from Varicella Zoster Virus (human herpesvirus 3). Not every herpesvirus may have a gH with a region corresponding to amino acids 1 to 48 of the gH protein according to SEQ ID NO: 1. However, every mature gH has at least some, e.g. 1, 2 or 3 amino acids N-terminally of the H1A domain. An example is EBV, wherein only 1 residue precedes the H1A domain in the mature peptide (assuming that the H1A domain starts at the first residue visible in the Xray structure, i.e. for EBV position 19 of the gH precursor). In case of a gH in which this preceding region is very short, for example 10 or less, 5 or less, or 3 or less amino acids, it is envisaged that the insertion is behind (i.e. C-terminally of) these residues and, that, optionally, these residues are duplicated behind the insertion, i.e. between the insertion and the H1A domain.
In one embodiment of the first aspect of the invention, the herpesvirus has a reduced virulence with respect to the virulence of the wildtype virus or has a replicative capacity that is different in diseased cells vs. non-diseased cells. The term “virulence of the wildtype virus” refers to the capacity of infecting, in particular entering cells the wildtype, i.e. non-recombinant, herpesvirus has. In a particular embodiment, the reduced virulence is a reduced or even eliminated ability of binding target-cell surface receptors to which the wildtype virus binds. Such target-cell surface receptors include, for example, HVEM (synonyms used in the art: HveA and TNFRSF14) and Nectin-1 (synonyms used in the art: HveC and PVRL1), to which gD binds, heparan sulfate proteoglycans to which gB and gC bind, Myelin-associated glycoprotein MAG, paired immunoglobin-like type 2 receptor alpha (PILRalpha), DC-SIGN and non-muscle myosin heavy chain 9 MYH9/NMHC-IIA to which gB binds and ITGB3/αvβ3 integrin to which gH-gL binds, alphavbeta6-integrin and alphavbeta8-integrin to which gH binds (Gianni T, Salvioli S, Chesnokova L S, Hutt-Fletcher L M, Campadelli-Fiume G. PLoS Pathog. 2013; 9(12):e1003806). The reduced or eliminated binding can be achieved, for example, by deleting or altering the viral glycoproteins (e.g. gD, gB or gC) or parts thereof which are involved in the interaction with target-cell surface receptors.
The term “replicative capacity” refers to the number of times a herpesvirus can copy itself in an infected cell in a given time. Preferably, when the replicative capacity is different in diseased cells vs. non-diseased cells, it is higher in diseased cells than in non-diseased cells (i.e. increased for diseased cells), or lower in non-diseased cells than in diseased cells (i.e. decreased for non-diseased cells).
In a preferred embodiment, the recombinant infectious herpesvirus comprises an altered gD having reduced or no specific binding to gD's cellular ligands or it lacks gD.
In a more preferred embodiment, the herpesvirus has gD having an amino acid deletion starting at any of amino acid residues 26 to 33 and ending at any of amino acid residues 31 to 63 (preferably starting at residue 31 and ending at residue 63), and/or starting at any of amino acid residues 65 to 86 and ending at any of amino acid residues 235 to 243 (preferably starting at residue 86 and ending at residue 243) of gD according to SEQ ID NO: 4 or a corresponding region of a homologous gD. With respect to mature gD, which lacks the N-terminal 25 amino acid signal peptide, this means an amino acid deletion starting at any of amino acid residues 1 to 8 and ending at any of amino acid residues 6 to 38 (preferably starting at residue 6 and ending at residue 38), and/or starting at any of amino acid residues 40 to 61 and ending at any of amino acid residues 210 to 218 (preferably starting at residue 61 and ending at residue 218) of mature gD, respectively. Therein, the start and end residues are comprised in the deletion. The term “corresponding region of a homologous gD” refers to a region of a gD which aligns with a given region of HSV-1 gD (preferably the deletion as described above) according to SEQ ID NO: 4 when using the Smith-Waterman algorithm and the following alignment parameters: MATRIX: BLOSUM62, GAP OPEN: 10, GAP EXTEND: 0.5. In case only a part or parts of the given region of HSV-1 gD aligns with the sequence of a homologous gD using above algorithm and parameters, the term “corresponding region of a homologous gD” refers to the region which aligns with the part(s) of the given region of HSV-1 gD. In other words, in this case the deletion in the homologous gD comprises only the amino acids which align with the part(s) of the given region of HSV-1 gD. Also, in the same case, the term “corresponding region of a homologous gD” may refer to a region which is flanked by corresponding flanking sequences, wherein corresponding flanking sequences are sequences of the homologous gD which align, using above algorithm and parameters, with sequences flanking the above given region (preferably the deletion as described above) of HSV-1 gD. These flanking sequences of HSV-1 gD are at least 5, 6, 7, 8, 9, 10, 15, 20, 30, 40 or 50 amino acids long (the flanking sequence at the N-terminus of gD, i.e. N-terminal of any of amino acid residue 26 to 33 according to SEQ ID NO: 4 may be shorter, i.e. as specified but up to 25, 26, 27, 28, 29, 30, 31 or 32 amino acid residues long) and align with the sequence of a homologous gD using above algorithm and parameters. The homologous gD is preferably gD of HSV-2, gD of Chimpanzee alpha1 herpesvirus (ChHV), gD of Macacine herpesvirus 1 (MHV1), gD of Papiine herpesvirus 2 (HVP2), gD of Cercopithecine herpesvirus 1 (CeHV1), gD of Cercopithecine herpesvirus 2 (CeHV2), gD of Saimiriine herpesvirus 1 (HVS1), gD of Bovine herpes virus 1 (BoHV-1), gD of Bovine herpes virus 5 (BoHV-5), gD of Equine herpesvirus 1 (EHV-1), gD of Equine herpesvirus 3 (EHV-3), gD of Equine herpesvirus 4 (EHV-4) gD of Equine herpesvirus 8 (EHV-8), gD of Equine herpesvirus 9 (EHV-9), gD of Canine herpesvirus 1 (CHV), gD of Feline herpesvirus 1 (FHV-1), gD of Duck enteritis virus (DEV), gD of Elk herpesvirus (ElkHV), gD of Rangiferine herpesvirus (RanHV), gD of Cervid herpesvirus 1 (CerHV-1), Leporid herpesvirus 4 (LHV-4), Cervid herpesvirus 2 (CerHV-2), gD of Caprine herpesvirus 1 (CapHV-1), gD of Bubaline herpesvirus 1 (BuHV1), gD of Fruit bat alphaherpesvirus 1 (FBAHV1), gD of Macropodid herpesvirus 1 (MaHV-1), Falconid herpesvirus 1 (FaHV-1), gD of Macropodid herpesvirus 1 (MaHV-2), gD of swine pseudorabies virus (PrV), Phocid herpesvirus-1 (PhHV-1), Marek's Disease Virus (MDV), Turkey Herpesvirus (HVT), Meleagrid herpesvirus 1 (MeHV-1), gD of Gallid herpesvirus 1 (GaHV-1), gD of Gallid herpesvirus 2 (GaHV-2) or gD of Vulture herpesvirus (VHV). More preferably the homologous gD is the gD of HSV-2, gD of Chimpanzee alpha1 herpesvirus (ChHV), gD of Papiine herpesvirus 2 (HVP2), of Macacine herpesvirus 1 (MHV1), gD of Cercopithecine herpesvirus 1 (CeHV1), gD of Fruit bat alphaherpesvirus 1 (FBAHV1), gD of Cercopithecine herpesvirus 2 (CeHV2), gD of Macropodid herpesvirus 1 (MaHV-2) or gD of Saimiriine herpesvirus 1 (HVS1). Most preferably, the homologous gD is the gD of HSV-2.
In another embodiment of the first aspect of the invention, the heterologous polypeptide ligand is fused to a domain that is functionally equivalent to the N-terminus of gD and is present in a protein whose function is equivalent to HSV gD, for example gp42 of human herpesvirus 4 (EBV), BZLF2 of Macacine herpesvirus, ORF44 of callitrichine herpesvirus 3 or BZLF2 of Porcine lymphotropic herpesvirus 1.
The herpesvirus may also be attenuated, for example by deletions in or alterations of the viral genes γ134.5, UL39, and/or ICP47. The term “attenuated” refers to a weakened or less virulent herpesvirus. Preferred is a conditional attenuation, wherein the attenuation affects only non-diseased cells not targeted by the herpesvirus by the retargerting according to the invention. Thus, only the diseased cells (e.g. cancer cells) to which the herpesvirus is retargeted is affected by the full virulence of the herpesvirus. A conditional attenuation can be achieved, for example, by the substitution of the promoter region of the γ134.5, UL39 and/or ICP47 gene with a promoter of a human gene that is exclusively expressed in cancer cells (e.g. the survivin promoter). Further modifications for a conditional attenuation may include the substitution of regulatory regions responsible for the transcription of IE genes like the ICP-4 promoter region with promoter regions of genes exclusively expressed in diseased, e.g. cancer cells (e.g. the survivin promoter). This change will result in a replication conditional HSV, which is able to replicate in cancer cells but not in normal cells. Additional modification of the virus may include the insertion of sequence elements responsive to MicroRNAs (miRs), which are abundant in normal but not tumor cells, into the 3′ untranslated region of essential HSV genes like ICP4. The result will be again a virus that is replication incompetent only in normal cells.
The term “IE genes” refers to immediate early genes, which are genes activated transiently and rapidly in response to a cellular stimulus.
In another embodiment of the first aspect of the invention, the herpesvirus comprises a heterologous polypeptide ligand fused to the N-terminus of mature gD or of a truncated gD, or inserted into gD (also referred to herein as modified gD). In a preferred embodiment, the heterologous polypeptide ligand inserted into gD is inserted C-terminally of any of amino acids 26 to 243 of gD according to SEQ ID NO: 4 (1 to 218 of mature gD) or replaces an amino acid sequence starting at any of amino acid residues 26 to 33 and ending at any of amino acid residues 31 to 63 (preferably starting at residue 31 and ending at residue 63), and/or starting at any of amino acid residues 65 to 86 and ending at any of amino acid residues 235 to 243 (preferably starting at residue 86 and ending at residue 243) of gD according to SEQ ID NO: 4 or a corresponding region of a homologous gD. Again, the term “corresponding region of a homologous gD” refers to a region of a gD which aligns with a given region of HSV-1 gD (preferably the amino acid sequence to be replaced as described above) according to SEQ ID NO: 4 when using the Smith-Waterman algorithm and the following alignment parameters: MATRIX: BLOSUM62, GAP OPEN: 10, GAP EXTEND: 0.5. In case only a part or parts of the given region of HSV-1 gD aligns with the sequence of a homologous gD using above algorithm and parameters, the term “corresponding region of a homologous gD” refers to the region which aligns with the part(s) of the given region of HSV-1 gD. In other words, in this case the sequence to be replaced in the homologous gD comprises only the amino acids which align with the part(s) of the given region of HSV-1 gD. Also, in the same case, the term “corresponding region of a homologous gD” may refer to a region which is flanked by corresponding flanking sequences, wherein corresponding flanking sequences are sequences of the homologous gD which align, using above algorithm and parameters, with sequences flanking the above given region (preferably the amino acid sequence to be replaced as described above) of HSV-1 gD. These flanking sequences of HSV-1 gD are at least 5, 6, 7, 8, 9, 10, 15, 20, 30, 40 or 50 amino acids long (the flanking sequence at the N-terminus of gD, i.e. N-terminal of any of amino acid residue 26 to 33 according to SEQ ID NO: 4 may be shorter, i.e. as specified but up to 25, 26, 27, 28, 29, 30, 31 or 32 amino acid residues long) and align with the sequence of a homologous gD using above algorithm and parameters. The homologous gD is as specified above with respect to the gD deletion.
In a preferred embodiment of the first aspect of the invention, the heterologous polypeptide ligand fused to or inserted into gH and/or gD binds to a target molecule or part thereof accessible on the surface of a cell. Preferably, it specifically binds to a molecule or part thereof accessible on the surface of a cell. The term “specifically binds” as used herein refers to a binding reaction which is determinative of the presence of said molecule in a heterogeneous population of proteins and, in particular, cells, such as in an organism, preferably a human body. As such, the specified ligand binds to its particular target molecule and does not bind in a substantial amount to other molecules present on cells or to other molecules to which the ligand may come in contact in an organism. Generally, a ligand that “specifically binds” a target molecule has an equilibrium affinity constant greater than about 105 (e.g., 106, 107, 108, 109, 1010, 1011, and 1012 or more) mole/liter for that target molecule. Generally, the heterologous polypeptide ligand fused to or inserted into gH may bind to a different or to the same molecule or part thereof accessible on the surface of a cell than/as the polypeptide ligand fused to or inserted into gD. Binding to the same molecule is thought to increase the extent of binding to the one molecule, whereas binding to different molecules confers dual specificity, and provides for: 1) a maintenance of the cell specificity in the event one of the molecules is no longer present on the cell surface, for example in case of a mutated tumor cell; 2) dealing with tumor heterogeneity: tumors are heterogeneous and often a tumor specific molecule is not expressed in all tumor cells; thus dual targeting, allows the virus to enter cells using either the first or the second targeted receptor thus increasing the number of tumor cells that can be infected.
In one embodiment, the heterologous polypeptide ligand is selected from the group consisting of an antibody, an antibody derivative and an antibody mimetic. The antibody, antibody derivative or antibody mimetic may be mono-specific (i.e. specific to one target molecule or part thereof accessible on the surface of a cell) or multi-specific (i.e. specific to more than one target molecule or part thereof accessible on the surface of the same or a different cell), for example bi-specific or tri-specific (see, e.g., Castoldi et al., Oncogene. 2013 Dec. 12; 32(50):5593-601; Castoldi et al., Protein Eng Des Sel. 2012 October; 25(10):551-9). The simultaneous targeting of more than one target molecule or part thereof accessible on the surface of the same cell increases specificity of the virus. The simultaneous targeting of more than one target molecule or part thereof accessible on the surface of a different cell provides for dealing with tumor heterogeneity as described above.
The term “antibody derivative” as used herein refers to a molecule comprising at least one antibody variable domain, but not having the overall structure of an antibody such as IgA, IgD, IgE, IgG, IgM, IgY or IgW, although still being capable of binding a target molecule. Said derivatives may be, but are not limited to functional (i.e. target binding, particularly specifically target binding) antibody fragments such as Fab, Fab2, scFv, Fv, or parts thereof, or other derivatives or combinations of the immunoglobulins such as nanobodies, diabodies, minibodies, camelid single domain antibodies, single domains or Fab fragments, domains of the heavy and light chains of the variable region (such as Fd, VL, including Vlambda and Vkappa, VH, VHH) as well as mini-domains consisting of two beta-strands of an immunoglobulin domain connected by at least two structural loops. Preferably, the antibody derivative is monovalent. More preferably, the derivative is a single chain antibody, most preferably having the structure VL-peptide linker-VH or VH-peptide linker-VL.
The term “antibody mimetic” as used herein refers to organic compounds that, like antibodies, can specifically bind antigens, but that are not structurally related to antibodies. They are usually artificial peptides or proteins with a molar mass of about 3 to 20 kDa. Non-limiting examples of antibody mimetics are affibodies, affilins, affimers, affitins, anticalins, avimers, DARPins, fynomers, Kunitz domain peptides, monobodies, Z domain of Protein A, Gamma B crystalline, ubiquitin, cystatin, Sac7D from Sulfolobus acidocaldarius, lipocalin, A domain of a membrane receptor, ankyrin repeat motive, SH3 domain of Fyn, Kunits domain of protease inhibitors, the 10th type III domain of fibronectin, synthetic heterobivalent or heteromultivalent ligands (Josan et al., Bioconjug Chem. 2011 22(7):1270-1278; Xu et al., PNAS 2012 109 (52) 21295-21300; Shallal et al., Bioconjug Chem. 2014 25(2) 393-405) or synthetic peptide ligands, e.g. from a (random) peptide library. Synthetic peptide ligands have non-naturally occurring amino acid sequences that function to bind a particular target molecule. Peptide ligands within the context of the present invention are generally constrained (that is, having some element of structure as, for example, the presence of amino acids which initiate a β turn or β pleated sheet, or for example, cyclized by the presence of disulfide bonded Cys residues) or unconstrained (linear) amino acid sequences of less than about 50 amino acid residues, and preferably less than about 40 amino acids residues. Of the peptide ligands less than about 40 amino acid residues, preferred are the peptide ligands of between about 10 and about 30 amino acid residues.
In one embodiment, the cell is a diseased cell. In particular, it may be a tumor cell, a chronically infected cell or a senescent cell.
In case of a tumor cell, the underlying disease is a tumor, preferably selected from the group consisting of Adrenal Cancer, Anal Cancer, Bile Duct Cancer, Bladder Cancer, Bone Cancer, Brain/CNS, Tumors, Breast Cancer, Cancer of Unknown Primary, Castleman Disease, Cervical Cancer, Colon/Rectum Cancer, Endometrial Cancer, Esophagus Cancer, Ewing Family Of Tumors, Eye Cancer, Gallbladder Cancer, Gastrointestinal Carcinoid Tumors, Gastrointestinal Stromal Tumor (GIST), Gestational Trophoblastic Disease, Hodgkin Disease, Kaposi Sarcoma, Kidney Cancer, Laryngeal and Hypopharyngeal Cancer, Leukemia, Liver Cancer, Lung Cancer, Lymphoma, Lymphoma of the Skin, Malignant Mesothelioma, Multiple Myeloma, Myelodysplastic Syndrome, Nasal Cavity and Paranasal Sinus Cancer, Nasopharyngeal Cancer, Neuroblastoma, Non-Hodgkin Lymphoma, Oral Cavity and Oropharyngeal Cancer, Osteosarcoma, Ovarian Cancer, Pancreatic Cancer, Penile Cancer, Pituitary Tumors, Prostate Cancer, Retinoblastoma, Rhabdomyosarcoma, Salivary Gland Cancer, Sarcoma—Adult Soft Tissue Cancer, Skin Cancer, Small Intestine Cancer, Stomach Cancer, Testicular Cancer, Thymus Cancer, Thyroid Cancer, Uterine Sarcoma, Vaginal Cancer, Vulvar Cancer, Waldnstrom Macroglobulinemia, and Wilms Tumor.
Preferred tumor diseases are HER-2-positive cancers (like breast cancer, ovary cancer, stomach cancer, lung cancer, head and neck cancer, osteosarcoma and glioblastoma multiforme), EGFR-positive cancers (like head and neck cancer, glioblastoma multiforme, non-small cell lung cancer, breast cancer, colorectal and pancreatic cancer), EGFR-vIII-positive cancers (like glioblastoma multiforme), PSMA-positive cancers (like prostate cancer), CD20+ positive lymphoma, and EBV related tumors.
In case of a chronically infected cell, the underlying disease is a chronic infectious disease, such as tuberculosis, malaria, chronic viral hepatitis (HBV, Hepatitis D virus and HCV), Acquired immune deficiency syndrome (AIDS, caused by HIV, Human Immunodeficiency Virus), or EBV related disorders: Systemic Autoimmune Diseases (Systemic Lupus Erithematosus, Rheumatoid Arthritis, and Sjogren Syndrome) and Multiple Sclerosis (MS).
In case of a senescent cell, the underlying disease is a senescence associated disease, such as (i) Rare genetic diseases called Progeroid syndromes, characterized by pre-mature aging: Werner syndrome (WS), Bloom syndrome (BS), Rothmund-Thomson syndrome (RTS), Cockayne syndrome (CS), Xeroderma pigmentosum (XP), Trichothiodystrophy or Hutchinson-Gilford Progeria Syndrome (HGPS) or (ii) Common age related disorders: Obesity, type 2 diabetes, sarcopenia, osteoarthritis, idiopathic pulmonary fibrosis and chronic obstructive pulmonary disease, cataracts, neurodegenerative diseases, or cancer treatment related disorders.
In one embodiment, regarding the target molecule or part thereof accessible on the surface of a cell, the target molecule is a protein, a glycolipid or a glycoside. Preferably, the protein is a cellular receptor. In case of a tumor cell, it is preferred that the cell surface protein is a cancer associated antigen, such as HER2, EGFR, EGFRvIII, EGFR3 (ERBB3), MET, FAP, PSMA, CXCR4, ITGB3, CEA, CAIX, Mucins, Folate-binding protein, GD2, VEGFR1, VEGFR2, CD20, CD30, CD33, CD52, CTLA4, CD55, integrin aVI33, integrin a5131, IGF1R, EPHA3, RANKL, TRAILR1, TRAILR2, IL13Ralpha, UPAR, Tenascin, PD-1, PD-L1, Tumor-associated glycoprotein 72, Ganglioside GM2, A33, Lewis Y antigen or MUC1. In case of a senescent cell, the target molecule is any surface protein that is expressed by the senescent cell like for example CXCR2 or the IL-1 receptor.
In one embodiment, the target molecule or part thereof accessible on the surface of a diseased cell is not naturally accessible on the surface of the cell, i.e. not accessible on the surface of a non-diseased (i.e. healthy) cell of the same type and/or tissue, and preferably not accessible on the surface of any other cell of the same organism. In a related embodiment regarding chronic infections diseases the target molecule is a molecule derived from a pathogen (e.g. a virus, bacterium or parasite) that infected the cell and it is expressed on the surface of the infected cell (such as HBsAg from HBV, gp120 from HIV, E1 and E2 from HCV, LMP1 and LMP2 from EBV),In another embodiment, the heterologous polypeptide ligand fused to or inserted into gD does not bind to any molecule or part thereof accessible on the surface of a cell, but abolishes binding to natural HSV receptors. As indicated, in this embodiment, the ligand fused to or inserted into gD has the purpose of abolishing the capacity of gD to bind its natural receptors. The targeting to the target cell is accomplished by the fusion to or insertion into a different glycoprotein of the virus, in particular gH.
In another embodiment, the heterologous polypeptide ligand fused to or inserted into gH or gD binds to a heterologous molecule or part thereof accessible on the surface of a cell. The term “heterologous molecule” as used herein with respect to cells refers to a molecule that is not native to the cell. In particular, it is not produced and/or cannot be produced naturally (i.e. non-recombinantly) by the cell. Preferably, in case of a polypeptide, it is not encoded by the native (i.e. recombinantly unaltered) genome of the cell. In this embodiment, the cell targeted by the gH or gD binding to the heterologous molecule or part thereof accessible on the surface of the cell can be used for growth, i.e propagation of the virus. The manner of propagation is specific to this cell and other cells (such as cells of a patient to be treated using this herpesvirus) will not be targeted by the gH or gD binding to the heterologous molecule or part thereof.
In a further embodiment of the first aspect of the invention, the recombinant infectious herpesvirus comprises a heterologous detectable marker, preferably in an expression cassette. The term “detectable marker” as used herein refers to markers and labels commonly used in the field, for example enzymatic markers such as phosphatases and peroxidases, membrane transporters such as the NaI symporter, PET or SPEC radiotracers, or fluorescent markers. Fluorescent markers include, for example, GFP and GFP variants, e.g. mutant GFPs having a different fluorescent spectrum, RFP (e.g. mCherry RFP) and RFP variants, e.g. mutant GFPs having a different fluorescent spectrum bilirubin-inducible fluorescent protein UnaG, dsRed, eqFP611, Dronpa, TagRFPs, KFP, EosFP, Dendra, and IrisFP. For tumor visualization, the membrane transporter NaI symporter is particularly suited.
Preferably, the detectable marker is inserted into a region that does not interfere with the virus infecting the cell or with the virus multiplying in the cell or with the virus propagating. In particular, the region does not interrupt any overlapping or any transcription units (sense or anti-sense). Preferably, the detectable marker is inserted into an intergenic sequence of the herpesvirus genome, more preferably between the UL37 and the UL38, the UL3 and UL4, or the US1 and US2 intergenic sequence.
In a further embodiment of the first aspect, the recombinant infectious herpesvirus comprises one or more expression cassettes expressing one or more of the following
In a particular embodiment of the first aspect, the recombinant infectious herpesvirus has a modified gH with an amino acid sequence according to SEQ ID NO: 2 (gH as in construct R-VG803, R-VG805 and R-VG809 of the examples; scFv-HER2 between aa 23-24 of wildtype gH) or SEQ ID NO: 3 (gH as in construct R-VG811 of the examples; scFv-HER2 replacing aa 24-47 of wildtype gH), both lacking the signal sequence (residues 1-18 of SEQ ID NO: 2 and 3, respectively), or a functional variant thereof having a sequence identity of at least 80%, 85%, 90%, 95%, 96%, 97%, 98% or 99%, and optionally a modified gD with an amino acid sequence according to SEQ ID NO: 5 (gD as in construct R-LM113 of the examples, scFv HER2 replacing aa 31 to 63 of wildtype gD), SEQ ID NO: 6 (gD as in construct R-LM249 of the examples, scFv HER2 replacing aa 86-243 of wildtype gD), SEQ ID NO: 7 (gD as in construct R-VG805 of the examples, scFv EGFR replacing aa 31 to 63 of wildtype gD), SEQ ID NO: 8 (gD as in construct R-VG807 of the examples, scFv-HER2 replacing aa 31 to 63 of wildtype gD), or SEQ ID NO: 9 (gD as in construct R-VG809 of the examples, deletion of aa 31 to 63 of wildtype gD), all lacking the signal sequence (residues 1-25 of SEQ ID NOs 5-9), or a functional variant thereof having a sequence identity of at least 80%, 85%, 90%, 95%, 96%, 97%, 98% or 99%. The term “functional” in this respect, apart from gD according to SEQ ID NO: 9, means that the gH and/or gD is capable of mediating infection of a cell carrying HER2 and/or EGFR, respectively, on its surface. With respect to gD according to SEQ ID NO: 9, it means that gD with the deletion and no insertion is not capable of mediating infection of any cell, in particular via HVEM or Nectin-1.
In another particular embodiment of the first aspect, the recombinant infectious herpesvirus has a modified gH with an amino acid sequence according to SEQ ID NO: 2 or 3, wherein the gH comprises any heterologous peptide ligand as defined above in place of scFv-HER2 (particularly not scFv-HER2), or a functional variant thereof having a sequence identity of at least 80%, 85%, 90%, 95%, 96%, 97%, 98% or 99%, and optionally a modified gD with an amino acid sequence according any of SEQ ID NO: 5-9, wherein the gD of SEQ ID NO: 5-9 comprises any heterologous peptide ligand as defined above in place of that defined in these sequences (scFv-HER2 and scFv-EGFR, respectively; any means in particular not the heterologous peptide ligand defined in these sequences). The term “functional” in this respect, apart from gD according to SEQ ID NO: 9, means that the gH and/or gD is capable of mediating infection of a cell carrying a molecule on its surface to which the heterologous peptide ligand comprised in gH/gD binds. With respect to gD according to SEQ ID NO: 9, it means that gD with the deletion and no insertion is not capable of mediating infection of any cell, in particular via HVEM or Nectin-1.
In a second aspect, the present invention relates to the recombinant infectious herpesvirus of the first aspect for use in the treatment of a disease.
In a preferred embodiment, said disease is a tumor disease, a chronic infectious disease, or a senescence-associated disease.
The tumor disease is preferably selected from the group consisting of Adrenal Cancer, Anal Cancer, Bile Duct Cancer, Bladder Cancer, Bone Cancer, Brain/CNS, Tumors, Breast Cancer, Cancer of Unknown Primary, Castleman Disease, Cervical Cancer, Colon/Rectum Cancer, Endometrial Cancer, Esophagus Cancer, Ewing Family Of Tumors, Eye Cancer, Gallbladder Cancer, Gastrointestinal Carcinoid Tumors, Gastrointestinal Stromal Tumor (GIST), Gestational Trophoblastic Disease, Hodgkin Disease, Kaposi Sarcoma, Kidney Cancer, Laryngeal and Hypopharyngeal Cancer, Leukemia, Liver Cancer, Lung Cancer, Lymphoma, Lymphoma of the Skin, Malignant Mesothelioma, Multiple Myeloma, Myelodysplastic Syndrome, Nasal Cavity and Paranasal Sinus Cancer, Nasopharyngeal Cancer, Neuroblastoma, Non-Hodgkin Lymphoma, Oral Cavity and Oropharyngeal Cancer, Osteosarcoma, Ovarian Cancer, Pancreatic Cancer, Penile Cancer, Pituitary Tumors, Prostate Cancer, Retinoblastoma, Rhabdomyosarcoma, Salivary Gland Cancer, Sarcoma—Adult Soft Tissue Cancer, Skin Cancer, Small Intestine Cancer, Stomach Cancer, Testicular Cancer, Thymus Cancer, Thyroid Cancer, Uterine Sarcoma, Vaginal Cancer, Vulvar Cancer, Waldnstrom Macroglobulinemia, and Wilms Tumor.
Preferred tumor diseases are HER-2-positive cancers (like breast cancer, ovary cancer, stomach cancer, lung cancer, head and neck cancer, osteosarcoma and glioblastoma multiforme), EGFR-positive cancers (like head and neck cancer, glioblastoma multiforme, non-small cell lung cancer, breast cancer, colorectal and pancreatic cancer), EGFR-vIII-positive cancers (like glioblastoma multiforme), PSMA-positive cancers (like prostate cancer), CD20+ positive lymphoma, and EBV related tumors.
The chronic infectious disease is preferably selected from the group consisting of tuberculosis, malaria, chronic viral hepatitis (HBV, Hepatitis D virus and HCV), Acquired immune deficiency syndrome (AIDS, caused by HIV, Human Immunodeficiency Virus), and EBV related disorders, e.g. Systemic Autoimmune Diseases (Systemic Lupus Erithematosus, Rheumatoid Arthritis, and Sjogren Syndrome) or Multiple Sclerosis (MS).
The senescence associated disease is preferably selected from the group consisting of (i) Rare genetic diseases called Progeroid syndromes, characterized by pre-mature aging: Werner syndrome (WS), Bloom syndrome (BS), Rothmund-Thomson syndrome (RTS), Cockayne syndrome (CS), Xeroderma pigmentosum (XP), Trichothiodystrophy or Hutchinson-Gilford Progeria Syndrome (HGPS) and (ii) Common age related disorders: Obesity, type 2 diabetes, sarcopenia, osteoarthritis, idiopathic pulmonary fibrosis and chronic obstructive pulmonary disease, cataracts, neurodegenerative diseases, or cancer treatment related disorders.
In a third aspect, the present invention relates to a nucleic acid comprising the genome of the recombinant infectious herpesvirus of the first aspect or at least its heterologous polypeptide ligand fused to the N-terminus of mature gH or of a truncated gH, or inserted into gH, optionally also its heterologous polypeptide ligand fused to the N-terminus of mature gD or of a truncated, or inserted into gD. It is to be understood that the nucleic acid, in particular the genome, does preferably not encode the modified gH and optionally the modified gD as mature proteins, but as precursors including the signal sequences (residues 1-18 of SEQ ID NO: 1 and residues 1-25 of SEQ ID NO: 4). Representative examples are gH and gD according to SEQ ID NOs 2, 3 and 5-9.
In a fourth aspect, the present invention relates to a vector comprising the nucleic acid of the third aspect. Suitable vectors are known in the art and include, for example, plasmids, cosmids, artificial chromosomes (e.g. bacterial, yeast or human), bacteriophages, viral vectors (e.g. retroviruses, lentiviruses, adenoviruses, adeno-associated viruses), in particular baculovirus vector, or nano-engineered substances (e.g. ormosils).
In one embodiment, the vector is modified, in particular by a deletion, insertion and/or mutation of one or more nucleic acid residues, such that its virulence is attenuated, preferably in case of a viral vector, or that it replicates conditionally in diseased cells but not in non-diseased cells. For example, the substitution of the promoter region of the γ134.5 gene with a promoter of a human gene that is exclusively expressed in cancer cells (e.g. survivin promoter), which will result in an attenuated phenotype in non-cancer cells and non-attenuated phenotype in cancer cells, is included. Further modifications may include the substitution of regulatory regions responsible for the transcription of IE genes like the ICP-4 promoter region with promoters of genes exclusively expressed in cancer cells (e.g. survivin promoter). This change will produce a replication conditional HSV, able to replicate in cancer cells but not in normal cells. Cell culture cells for propagation of the virus progeny will provide high levels of specific promoter activating proteins to allow for the production of high virus yields.
In a fifth aspect, the present invention relates to a cell comprising the recombinant infectious herpesvirus of the first aspect, the nucleic acid of the third aspect or the vector of the fourth aspect. Preferably, the cell is a cell culture cell. Suitable cell cultures and culturing techniques are well known in the art, see for example Peterson et al., Comp Immunol Microbiol Infect Dis. 1988; 11 (2): 93-8.
In a sixth aspect, the present invention relates to the recombinant infectious herpesvirus of the first aspect for use as a medicament.
In a seventh aspect, the present invention relates to a method of killing a cell using the recombinant infectious herpesvirus of the first aspect. In one embodiment, cells in a cell culture which carry the target molecule on their surface can be killed, for example to test the lytic efficacy of the recombinant infectious herpesvirus of the first aspect. In another embodiment, the cell is a diseased cell obtained from a patient, for example a tumor cell from a cancer patient, and optionally propagated. This cell is infected and thereby killed with the recombinant infectious herpesvirus of the first aspect. The successful killing of cells obtained from the patient is indicative for the cell specificity of the recombinant infectious herpesvirus of the first aspect in vivo in the patient, i.e. for the therapeutic success. In a further embodiment, also non-diseased cells may be obtained from the same patient or from a subject not suffering from the disease the patient suffers from as a control (cells not carrying the target molecule on their surface), as an indication for whether or not non-diseased cells are susceptible to infection by the recombinant infectious herpesvirus. In yet another embodiment, diseased cells comprised in a population of cells (e.g. tissue such as blood) comprising non-diseased cells and diseased cells (for example cancer cells such as leukemia cells) are killed after isolation of the population of cells from the patient (e.g. Leukapheresis). This is to obtain a population of cells free of diseased cells, e.g. blood free of diseased cells such as leukemia cells, in particular for a later transplant of the population of cells into a patient, preferably into the same patient the population of cells was isolated from. In case of blood and leukemia, for example, this method provides for re-infusion of blood free of tumor cells.
In a preferred embodiment, the method of the seventh aspect including the recited embodiments is an in vitro method.
In an eighth aspect, the present invention relates to an in vitro method for growing the recombinant infectious herpesvirus of the first aspect in cells. Suitable techniques and conditions for growing herpesvirus in cells are well known in the art, see for example Peterson et al. (Comp Immunol Microbiol Infect Dis. 1988; 11(2):93-8). In a particular embodiment, the recombinant infectious herpesvirus of the first aspect comprises a modified gH and gD as described above. Preferably, the cells in which the herpesvirus is grown in carry a target molecule to which either (i) the ligand of the modified gH or (ii) the ligand of the modified gD binds to. In case of (i), the ligand of the modified gD binds a molecule of a cell to be targeted in vivo, preferably a diseased cell in a patient, and the ligand of the modified gH binds a molecule of a cell to be targeted in cell culture; in case of (ii), the ligand of the modified gH binds a molecule of a cell to be targeted in vivo, preferably a diseased cell in a patient, and the ligand of the modified gD binds a molecule of a cell to be targeted in cell culture.
The invention is described by way of the following examples which are to be construed as merely illustrative and not limitative of the scope of the invention. It is noted that in the examples, the amino acid residue references with respect to gH relate to the precursor protein according to SEQ ID NO: 1 and the amino acid residue references with respect to gD relate to the mature protein (SEQ ID NO: 4 lacking residues 1-25).
Construction of HSV recombinants expressing genetically modified gHs carrying a single chain antibody (scFv) directed to Her2 (scFv-HER2), without or with deletion in the HSV gene, and carrying mCherry as reporter gene.
A) R-VG803: Insertion of scFv-HER2 Between Aa 23 and 24 of HSV gH by Means of HSV-BAC and galK Recombineering.
The inventors engineered R-VG801 by insertion of the sequence encoding the trastuzumab scFv between AA 23 and 24 of gH. The starting genome was pYEBac102, which carries LOX-P-bracketed pBeloBAC sequences inserted between UL3 and UL4 of HSV-1 genome. The engineering was performed by means of galK recombineering. Briefly, the GalK cassette with homology arms to gH was amplified by means of primers gH6_galK_f ATGCG GTCCATGCCCAGGCCATCCAAAAACCATGGGTCTGTCTGCTCAGTCCTGTTGACA ATTAATCATCGGCA (SEQ ID NO: 10) and gH5_galK_r TCGTGGGGGTTATTAT TTTGGGCGTTGCGTGGGGTCAGGTCCACGACTGGTCAGCACTGTCCTGCTCCTT (SEQ ID NO: 11). This cassette was electroporated in SW102 bacteria carrying pYEBac102. The recombinant clones carrying the galK cassette were selected on plates containing M63 medium (15 mM (NH4)2SO4, 100 mM KH2PO4, 1.8 μg FeSO4.7H2O, adjusted to pH7) supplemented with 1 mg/L D-biotin, 0,2% galactose, 45 mg/L L-leucine, 1 mM MgSO4.7H2O and 12 μg/ml chloramphenicol. In order to exclude galK false positive bacterial colonies, they were streaked also on McConkey agar base plates supplemented with 1% galactose and 12 μg/ml chloramphenicol and checked by colony PCR with primer galK_129_f ACAATCTCTGTTTGCCAACGCATTTGG (SEQ ID NO: 28) and galK_417_r CATTGCCGCTGATCACCATGTCCACGC (SEQ ID NO: 29). Next, the trastuzumab scFv cassette bracketed by the Ser-Gly linkers described below and by homology arms to gH was amplified as two separate fragments, named fragment #1 and fragment #2, from pSG-ScFvHER2-SG. pSG-ScFvHER2-SG carries a trastuzumab scFv cassette bracketed by Ser-Gly linkers (SEQ ID NO: 12). Fragment #1 was amplified by means of primers gH23_8SG_scFv4D5_f TCGTGGGGGTTATTATTTTGGGCGTTGCGTGGGGTCAGG TCCACGACTGGCATAGTAGTGGCGGTGGCTCTGGATCCG (SEQ ID NO: 13) and scFv4D5_358_r GGAAACGGTTCGGATCAGCCATCGG (SEQ ID NO: 14), using pSG-ScFvHER2 as template. Fragment #2 was amplified by means of gH24_12SG_scFv4D5r ATGCGGTCCATGCCCAGGCCATCCAAAAACCATGGGTCTGTCTGCTCAGTACCG GATCCACCGGAACCAGAGCC (SEQ ID NO: 15) and scFv4D5_315_f GGAGATCAAATCGGATATGCCGATGG (SEQ ID NO: 16) using pSG-ScFvHER2 as template. Fragments #1 and #2 were annealed and extended to generate the scFv-HER2 cassette, bracketed by the Ser-Gly linkers and the homology arms to gH. The recombinant genome carries the scFv to HER2 bracketed by an upstream Ser-Gly linker, with sequence HSSGGGSG (SEQ ID NO: 17), and a downstream Ser-Gly linker, with sequence SSGGGSGSGGSG (SEQ ID NO: 18). The linker between VL and VH is SDMPMADPNR FRGKNLVFHS (SEQ ID NO: 19). The recombinant clones carrying the excision of the galK cassette and the insertion of the sequence of choice, exemplified by scFv-HER2, or mCherry, were selected on plates containing M63 medium (see above) supplemented with 1 mg/L D-biotin, 0.2% deoxy-2-galactose, 0.2% glycerol, 45 mg/L L-leucine, 1 mM MgSO4.7H2O and 12 μg/ml chloramphenicol. Bacterial colonies were also checked for the presence of sequence of choice by means of colony PCR.
In R-VG801 the inventors then inserted the mCherry red fluorescent protein in the UL37-UL38 intergenic region. The mCherry sequence is under the CMV promoter. First, the inventors inserted the galK cassette, amplified by means of oligonucleotides UL37/38_galK_f CCGCAGGCGTTGCGAGTACCCCGCGTCTTCGCGGGGTGTTATACGGCCACCCTGT TGACAATTAATCATCGGCA (SEQ ID NO: 20) and UL37/38_galK_r TCCGGACAATCCCCCGGGCCTGGGTCCGCGAACGGGATGCCGGGACTTAATCAGC ACTGTCCTGCTCCTT (SEQ ID NO: 21). Subsequently, the inventors replaced the galK sequence with the promoter-mCherry cassette, amplified by means of oligonucleotides UL37/38_CMV_mcherry_f CCGCAGGCGTTGCGAGTACCCCGCGTCTTCGCGGGGTGTTATACGGCCACCGATG TACGGGCCAGATATACG (SEQ ID NO: 22) and UL37/38_pA_mcherry_1958_r TCCGGACAATCCCCCGGGCCTGGGTCCGCGAACGGGATGCCGGGACTTAACCATA GAGCCCACCGCATCC (SEQ ID NO: 23).
B) Insertion of scFv-HER2 Between Aa 23 and 48 of HSV gH (R-VG811).
First, the inventors engineered R-VG799, by insertion of the sequence encoding the trastuzumab scFv between AA 23 and 48 of gH. The procedure was the same as described above to engineer the scFv-HER2 in gH of R-VG803, with the two following differences. First, the galK cassette was amplified by means of primers gH29_galK_f CGCGGTGGTTTTTGGGGGTCGGGGGTGTTTGGCAGCCACAGACGCCCGGTCCTGT TGACAATTAATCATCGGCA (SEQ ID NO: 24) and gH5_galK_r TCGTGGGGGTTATTATTTTGGGCGTTGCGTGGGGTCAGGTCCACGACTGGTCAGC ACTGTCCTGCTCCTT (SEQ ID NO: 25). Second, fragment #2 differed from the Fragment #2 employed to generate R-VG803, in that it was amplified by means of gH48_12SG_scFv4D5_r CCGCGCGGTGGTTTTTGGGGGTCGGGGGTGTTTGGCAGCCACAGACGCCCACCGG ATCCACCGGAACCAGAGCC (SEQ ID NO: 26) and scFv4D5_315_f GGAGATCAAATCGGATATGCCGATGG (SEQ ID NO: 27). The mCherry sequence was inserted as detailed for the construction of R-VG803.
C) R-VG809: Deletion of AA 6-38 from gD of R-VG803.
R-VG809 is identical to R-VG803 and, in addition, it carries the deletion of the sequence corresponding to AA 6-38 in gD. The starting material was the R-VG803 BAC genome. To generate the AA 6-38 deletion in gD, galK cassette flanked by homology arms to gD was amplified with primers gD5_galK_f TTGTCGTCATAGTGGGCCTCCATGGGGTCCGCGGCAAATATGCCTTGGCGCCTGT TGACAATTAATCATCGGCA (SEQ ID NO: 30) and gD39_galK_r ATCGGGAGGCTGGGGGGCTGGAACGGGTCCGGTAGGCCCGCCTGGATGTGTCAG CACTGTCCTGCTCCTT (SEQ ID NO: 31). Next, the inventors replaced galK sequence with a synthetic double-stranded oligonucleotide gD_aa5_39_f_r TTGTCGTCATAGTGGGCCTCCATGGGGTCCGCGGCAAATATGCCTTGGCGCACAT CCAGGCGGGCCTACCGGACCCGTTCCAGCCCCCCAGCCTCCCGAT (SEQ ID NO: 32).
D) R-VG805: Insertion of scFv-EGFR in Place of AA 6-38 of R-VG803 gD.
The starting material for R-VG805 was the R-VG803 BAC genome. To generate the AA 6-38 deletion in gD, galK cassette flanked by homology arms to gD was amplified with primers gD5_galK_f TTGTCGTCATAGTGGGCCTCCATGGGGTCCGCGGCAAATATGCCTTGGCGCCTGT TGACAATTAATCATCGGCA (SEQ ID NO: 33) and gD39_galK_r ATCGGGAGGCTGGGGGGCTGGAACGGGTCCGGTAGGCCCGCCTGGATGTGTCAG CACTGTCCTGCTCCTT (SEQ ID NO: 34). Next, the inventors replaced galK sequence in BAC VG804 with a scFv-EGFR cassette amplified from pTNHaa-αEGFR (kindly provided by Dr. Steve Russel, Mayo Clinic, Rochester) by means of primers BAC_LM611_f TTGTCGTCATAGTGGGCCTCCATGGGGTCCGCGGCAAATATGCCTTGGCGGCCGA GGTGCAACTGCAGCAGTC (SEQ ID NO: 35) and gD39_11SAG_EGFR_r ATCGGGAGGCTGGGGGGCTGGAACGGGTCCGGTAGGCCCGCCTGGATGTGACTT GCACTAGATGAAGCACTTCCTGCGGAAGATTTGATCTCGAGTTCTGTCCCCG (SEQ ID NO: 36). The downstream linker has the sequence SSAGSASSSAS (SEQ ID NO: 37); no upstream linker is present. The linker between VH and VL is GGGGSGGGGSGGGGS (SEQ ID NO: 38).
E) R-VG807: Insertion of scFv-HER2 in Place of AA 6-38 of R-VG803 gD.
The starting material for R-VG807 was the R-VG803 BAC genome. To generate the AA 6-38 deletion in gD, galK cassette flanked by homology arms to gD was amplified with primers gD5_galK_f TTGTCGTCATAGTGGGCCTCCATGGGGTCCGCGGCAAATATGCCTTGGCGCCTGT TGACAATTAATCATCGGCA (SEQ ID NO: 39) and gD39_galK_r ATCGGGAGGCTGGGGGGCTGGAACGGGTCCGGTAGGCCCGCCTGGATGTGTCAG CACTGTCCTGCTCCTT (SEQ ID NO: 40). Next, the inventors replaced galK sequence with scFv HER2 cassette amplified from pSG-ScFvHER2 by means of primers gD5_scFvHER2_f TTGTCGTCATAGTGGGCCTCCATGGGGTCCGCGGCAAATATGCCTTGGCGTCCGA TATCCAGATGACCCAGTCCC (SEQ ID NO: 41) and gD39_11SAG_HER2_r ATCGGGAGGCTGGGGGGCTGGAACGGGTCCGGTAGGCCCGCCTGGATGTGACTT GCACTAGATGAAGCACTTCCTGCGGAAGAGGAGACGGTGACTAGTGTTCCTTGAC C (SEQ ID NO: 42). The downstream linker has the sequence SSAGSASSSAS (SEQ ID NO: 43); no upstream linker is present. The linker between VH and VL is SDMPMADPNR FRGKNLVFHS (SEQ ID NO: 44).
To reconstitute the recombinant viruses, 500 ng of recombinant BAC DNA was transfected into SK-OV-3 cells by means of Lipofectamine 2000 (Life Technologies). Virus growth was monitored by red fluorescence. The structure of the recombinants was verified by sequencing the gH and also gD ORF for R-VG809, R-VG805 and R-VG807. Virus stocks were generated and titrated in SK-OV-3 cells, or in J-HER2 cells.
Verification of scFv-HER2 insertion in gH of R-VG803.
Vero cells were infected with R-VG803 (3 PFU/cell), and with R-LM5 for comparison, and harvested 72 h after infection. Cell lysates were subjected to polyacrylamide gel electrophoresis, transferred to PVDF membranes, and immunoblotted with polyclonal antibody to gH.
Infection assay with R-VG803, carrying the scFv-HER2 in gH, of J-HER2 cells, which express HER2 as the sole receptor.
It has previously been shown that the insertion of scFv-HER2 in gD confers to the recombinant viruses R-LM113 and R-LM249 the ability to enter cells through the HER2 receptor. To provide evidence that the insertion of scFV-HER2 in gH confers to R-VG803 the ability to enter cells through the HER2 receptor, the inventors made use of cells that express HER2 as the sole receptor. The parental J cells express no receptor for gD, hence cannot activate gD, and are not infected by wt-HSV. J-HER2 cells transgenically express HER2 as the sole receptor. As controls, the inventors included J-nectin and J-HVEM cells, which transgenically express Nectin 1 or HVEM as receptors and are infected by wt-HSV, and human and animal cells which express the human or animal HVEM/Nectin 1 orthologs, namely the keratinocytic HaCaT, the neuronal SK-N-SH, the cancer HeLa, MDA-MB-231, the human fibroblastic HFF14, the hamster BHK cells, as well as the ovary cancer SK-OV-3 cells which express HER2 plus HVEM/Nectin 1. As shown in
To prove that entry of R-VG803 into J-HER2 cells occurs through HER2 as the cellular receptor, and to investigate the role of gD in the entry pathway of R-VG803 into SK-OV-3 cells, the inventors first confirmed that infection occurs through the HER2 receptor. J-HER2 cells were infected with R-VG803 in the presence of trastuzumab, the MAb to HER2 from which the scFv-HER2 was derived. Trastuzumab blocked the infection of J-HER2 cells with R-VG803, as detected by fluorescence microscopy (
Genetic engineering of the R-VG809 recombinant retargeted to HER2 by insertion of scFV-HER2 in gH and detargeted from gD receptors by deletion of the gD sequence encoding AA 6-38.
The inventors engineered a recombinant carrying the scFv-HER2 in gH and the deletion of portions of receptors' binding sites from gD. The two major receptors of gD are Nectin 1 and HVEM. The binding site of HVEM in gD maps to AA 1-32. The binding site of Nectin 1 in mature gD is more widespread and includes the Ig-folded core and portions located between AA 35-38, 199-201, 214-217, 219-221. The inventors deleted from R-VG803 mature gD the AA 6-38 region, i.e. the same region which was previously deleted from R-LM113, a HSV retargeted to HER2 by insertion of the scFv-HER2 between AA 5 and 39 of mature gD. The deletion removes the entire HVEM binding site and some residues implicated in the interaction with Nectin 1, which include the Ig-folded core and portions located between AA 35-38, 199-201, 214-217, 219-221. Even though a few AA implicated in the interaction with Nectin 1 were deleted, R-LM113 was shown to be detargeted from Nectin 1 and from HVEM, the recombinant is detargeted from both HVEM and Nectin 1. The recombinant virus named R-VG809 failed to infect not only J-HVEM cells, but also J-Nectin 1 cells, as well as the human HaCaT, SK-N-SH, MDA-MB-231, HeLA, HFF14 cells, the hamster BHK cells. It maintained the ability to infect efficiently J-HER2 and SK-OV-3 cells (
Genetic engineering of the R-VG805 recombinant retargeted to HER2 by insertion of scFv-HER2 in gH and retargeted to EGFR by insertion of scFv-EGFR in place of AA 6-38 region of mature gD. Double Retargeting to two different receptors of choice plus detargeting from gD receptors.
The inventors engineered a HSV recombinant simultaneously retargeted to HER2, by insertion of scFv-HER2 in gH, and to EGFR, by insertion of scFv-EGFR in place of AA 6-38 region of mature gD. Briefly, R-VG803 was modified so as to replace the endogenous AA 6-38 region of mature gD with the scFv to EGFR, herein named scFv-EGFR. The recombinant virus named R-VG805 was indeed retargeted to HER2 by means of gH, detargeted from Nectin 1 and HVEM, because of the deletion of the AA 6-38 region in mature gD, and retargeted to EGFR because of the insertion of the scFv to EGFR in place of AA 6-38 of mature gD (
Genetic engineering of the R-VG807 recombinant double-retargeted to HER2 by insertion of scFv-HER2 in gH and by insertion of scFv-HER2 in place of AA 6-38 region of mature gD. Double retargeting to a same receptor of choice plus detargeting from gD receptors.
The inventors engineered a HSV recombinant retargeted to HER2 both by insertion of scFv-HER2 in gH and by insertion of scFv-HER2 in place of AA 6-38 region of mature gD. Briefly, R-VG803 was modified so as to replace the endogenous AA 6-38 region of mature gD with the scFv-HER2. The recombinant virus named R-VG807 is double-retargeted to HER2, and detargeted from Nectin 1 and HVEM, because of the deletion of the AA 6-38 region in mature gD.
Study on the insertion site for scFv-HER2 in gH. Deletion of sequence encoding AA 24-47.
The inventors investigated whether insertion of the scFv-HER2 can be coupled with the deletion of N-terminal portion of gH. The deleted portion was the sequence coding for AA 24-47 of gH. This sequence was replaced with scFv-HER2. The resulting recombinant was named R-VG811.
Extent of replication of recombinants.
The inventors compared the extent of replication of R-VG803 and R-VG809 to that of two recombinants, R-LM113 and R-LM249, that are retargeted to HER2 through the insertion of scFv-HER2 in gD. Replication was measured in J-HER2 cells, which express the HER2 as the receptor, and in SK-OV-3 cells, which express HER2 and Nectin1/HVEM as receptors. Cells were infected at 0.1 PFU/cell or 0.01 PFU/ml, and harvested 3, 24, 48 h after infection. The results in
Ability of R-VG803 and R-VG809 to kill HER2-positive cancer cells.
As a measure of the ability of R-VG803 or R-VG809 to kill cells, the inventors performed a cytotoxicity test, by means of AlamarBlue, for HER2 positive SK-OV-3 cells. The wt HSV R-LM5, and the retargeted R-LM113 and R-LM249 were included for comparison.
| Number | Date | Country | Kind |
|---|---|---|---|
| 15425012 | Feb 2015 | EP | regional |
| Filing Document | Filing Date | Country | Kind |
|---|---|---|---|
| PCT/EP2016/052879 | 2/11/2016 | WO | 00 |
| Publishing Document | Publishing Date | Country | Kind |
|---|---|---|---|
| WO2016/128497 | 8/18/2016 | WO | A |
| Number | Date | Country |
|---|---|---|
| 2009013448 | Jan 2009 | WO |
| WO 2009013448 | Jan 2009 | WO |
| 2009144755 | Dec 2009 | WO |
| Entry |
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| Number | Date | Country | |
|---|---|---|---|
| 20180002723 A1 | Jan 2018 | US |
