RORGamma Modulators

Information

  • Patent Application
  • 20150266856
  • Publication Number
    20150266856
  • Date Filed
    October 17, 2013
    11 years ago
  • Date Published
    September 24, 2015
    9 years ago
Abstract
Described are RORy modulators of the formula (I), and N-oxides thereof, and pharmaceutically acceptable salts thereof, and solvates and hydrates thereof, wherein R1, R2, R3, R4, R5, R6, Ra, x, y, L, G, Z, the bond denoted by “q”, the ring system denoted by “A” and the ring system denoted by “B” are defined herein. Also provided are pharmaceutical compositions comprising the same. Such compounds and compositions are useful in methods for modulating RORy activity in a cell and methods for treating a subject suffering from a disease or disorder in which the subject would therapeutically benefit from modulation of RORy activity, for example, autoimmune and/or inflammatory disorders.
Description
BACKGROUND OF THE INVENTION

1. Field of the Invention


This invention relates to modulators of the retinoid-related orphan receptor RORγ and methods for using such modulators. The compounds described herein can be particularly useful for diagnosing, preventing, or treating a variety of diseases and disorders in humans and animals. Exemplary disorders include psoriasis, arthritis, asthma, inflammatory bowel disease and multiple sclerosis.


2. Summary of the Related Art


The retinoid-related orphan receptors RORα, RORβ, and RORγ play an important role in numerous biological processes including organ development, immunity, metabolism, and circadian rhythms. See, for example, Dussault et al. in Mech. Dev. (1998) vol. 70, 147-153; Andre et al. in EMBO J. (1998) vol. 17, 3867-3877; Sun et al. in Science (2000) vol. 288, 2369-2373; and Jetten in Nucl. Recept. Signal. (2009) vol. 7, 1-32.


RORγ is expressed in several tissues including the thymus, kidney, liver, and muscle. Two isoforms of RORγ have been identified: RORγ1 and RORγ2 (also known, respectively, as RORγ and RORγt). See, for example, Hirose et al. in Biochem. Biophys. Res. Commun. (1994) vol. 205, 1976-1983; Oritz et al. in Mol. Endocrinol. (1995) vol. 9, 1679-1691; and He et al. in Immunity (1998) vol. 9, 797-806. Expression of RORγt is restricted to lymphoid cell types including CD4+CD8+ thymocytes, IL-17 producing T helper (Th17) cells, lymphoid tissue inducer (LTi) cells, and γ7 cells. RORγt is essential for the development of lymph nodes and Peyer's patches and for the normal differentiation of Th17, γδ, and LTi cells. See, for example, Sun et al. in Science (2000) vol. 288, 2369-2373; Ivanov et al. in Cell (2006) vol. 126, 1121-1133; Eberl et al. in Nat. Immunol. (2004) vol. 5, 64-73; Ivanov et al. in Semin. Immunol. (2007) vol. 19, 409-417; and Cua and Tato in Nat. Rev. Immunol. (2010) vol. 10, 479-489.


Proinflammatory cytokines such as IL-17A (also referred to as IL-17), IL-17F, and IL-22 produced by Th17 cells and other RORγ+ lymphocytes activate and direct the immune response to extracelluar pathogens. See, for example, Ivanov et al. in Semin. Immunol. (2007) vol. 19: 409-417; and Marks and Craft in Semin. Immunol. (2009) vol. 21, 164-171. RORγ directly regulates IL-17 transcription and disruption of RORγ in mice attenuates IL-17 production. See, for example, Ivanov et al. in Cell (2006) vol. 126, 1121-1133.


Dysregulated production of IL-17 has been implicated in several human autoimmune and inflammatory diseases including multiple sclerosis, rheumatoid arthritis, psoriasis, inflammatory bowel disease (IBD), and asthma. See, for example, Lock et al. in Nat. Med. (2002) vol. 8, 500-508; Tzartos et al. in Am. J. Pathol. (2008) vol. 172, 146-155; Kotake et al. in J. Clin. Invest. (1999) vol. 103, 1345-1352; Kirkham et al. in Arthritis Rheum. (2006) vol. 54, 1122-1131; Lowes et al. in J. Invest. Dermatol. (2008) vol. 128, 1207-1211; Leonardi et al. in N. Engl. J. Med. (2012) vol. 366, 1190-1199; Fujino et al. in Gut (2003) vol. 52, 65-70; Seiderer et al. in Inflamm. Bowel Dis. (2008) vol. 14, 437-445; Wong et al. in Clin. Exp. Immunol. (2001) vol. 125, 177-183; and Agache et al. in Respir. Med. (2010) 104: 1131-1137. In murine models of these diseases, inhibition of IL-17 function by neutralizing antibodies or genetic disruption of IL-17 or IL-17 receptor ameliorates the disease course or clinical symptoms. See, for example, Hu et al. in Ann. N.Y. Acad. Sci. (2011) vol. 1217, 60-76.


Disruption of RORγ in mice also attenuates disease progression or severity in animal models of autoimmunity and inflammation including experimental autoimmune encephalomyelitis (EAE), imiquimod induced psorasis, colitis, and allergic airway disease. See, for example, Ivanov et al. in Cell (2006) vol. 126, 1121-1133; Yang et al. in Immunity (2008) vol. 28, 29-39; Pantelyushin et al. in J. Clin. Invest. (2012) vol. 122, 2252-2256; Leppkes et al. in Gastroenterology (2009) vol. 136, 257-267; and Tilley et al. in J. Immunol. (2007) vol. 178, 3208-3218.


Each of the references in this Background section is hereby incorporated herein by reference in its entirety for all purposes.


Therapeutic agents exist to treat a variety of inflammatory and autoimmune diseases, but there still remains a significant unmet medical need in these therapeutic areas. Given the role of IL-17 in human disease and the validation of IL-17 and RORγ as targets in murine disease models, compounds capable of modulating RORγt activity are contemplated to provide a therapeutic benefit in the treatment of multiple immune and inflammatory disorders.


SUMMARY OF THE INVENTION

In one aspect, the invention comprises compounds of the formula (I),




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or N-oxides, pharmaceutically acceptable salts, solvates and/or hydrates thereof, wherein R1, R2, R3, R4, R5, R6, Ra, x, y, G, L, Z, the bond denoted by “q”, the ring system denoted by “A” and the ring system denoted by “B” are defined herein. The invention includes stereoisomeric forms of the compounds of formula I, including stereoisomerically-pure, scalemic and racemic forms.


In another aspect, the invention comprises pharmaceutical compositions comprising a compound according to formula (I), stereoisomeric form, N-oxide, pharmaceutically acceptable salt, solvate or hydrate as described herein, and a pharmaceutically acceptable carrier, excipient, or diluent.


In another aspect, the invention comprises methods for antagonizing RORγ in a cell comprising contacting the cell with an effective amount of a compound according to formula (I), stereoisomeric form, N-oxide, pharmaceutically acceptable salt, solvate or hydrate as described herein. This aspect may be conducted in vitro or in vivo.


In another aspect, the invention comprises methods for treating a subject suffering from a disease or disorder modulated by RORγ, the method comprising administering to a subject a therapeutically effective amount of compound according to formula (I), stereoisomeric form, N-oxide, pharmaceutically acceptable salt, solvate, hydrate or pharmaceutical composition as described herein.


In another aspect, the invention comprises a method for treating a disease or disorder selected from an inflammatory disease or disorder, an autoimmune disease or disorder, an allergic disease or disorder, a metabolic disease or disorder, and/or cancer in a subject, the method comprising administering to the subject a therapeutically effective amount of compound according to formula (I), or a stereoisomeric form, N-oxide, pharmaceutically acceptable salt, solvate, hydrate or pharmaceutical composition thereof as described herein.







DETAILED DESCRIPTION OF THE INVENTION

In one aspect, the invention comprises compounds of formula (I),




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and stereoisomeric forms thereof, and N-oxides thereof, and pharmaceutically acceptable salts thereof, and solvates and hydrates thereof, wherein

    • R1 is selected from the group consisting of —H, -halogen, —CN, —NO2, —OH, —O—(C1-C4)alkyl, —O—(C1-C4)fluoroalkyl, —SH, —S—(C1-C4)alkyl, —NH2, —NH—(C1-C4)alkyl, —NH—(C1-C4)fluoroalkyl, —N((C1-C4)alkyl)2, —N((C1-C4)fluoroalkyl)2, —NH—(C3-C6)cycloalkyl, —O—C(O)—(C1-C4)alkyl, —S—C(O)—(C1-C4)alkyl, —NH—C(O)—(C1-C4)alkyl, —N((C1-C4)alkyl)-C(O)—(C1-C4)alkyl, —S(O)1-2H, —S(O)1-2(C1-C4)alkyl, —S(O)1-2OH, —S(O)1-2O(C1-C4)alkyl, —S(O)1-2NH2, —S(O)1-2NH(C1-C4)alkyl, —S(O)1-2N((C1-C4)alkyl)2, —(C1-C6)alkyl, —(C1-C6)fluoroalkyl, —(C3-C6)cycloalkyl, —(C3-C6)heterocycloalkyl, —C(O)OH, —C(O)—(C1-C4)alkyl, —C(O)N H2, —C(O)NH(C1-C4)alkyl, —C(O)N((C1-C4)alkyl)2, —NH—CH2-phenyl and phenyl, wherein each phenyl is optionally substituted by 1, 2 or 3 substituents selected from -halogen, —CN, —NO2, —O—R30, —N(R31)2 and —S(R30), in which each R30 is independently selected from the group consisting of —H, —CH3, —CH2CH3 and —CF3, and each R31 is independently selected from the group consisting of —H, —CH3 and —CH2CH3;
    • the




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    •  moiety has the structure
      • (a)







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    •  in which R2 is selected from the group consisting of —H, -halogen, —CN, —NO2, —N3, —OH, —O—(C1-C4)alkyl, —O—(C1-C4)fluoroalkyl, —SH, —S—(C1-C4)alkyl, —NH2, —NH—(C1-C4)alkyl, —N((C1-C4)alkyl)2, —O—C(O)—(C1-C4)alkyl, —S—C(O)—(C1-C4)alkyl, —NH—C(O)—(C1-C4)alkyl, —N((C1-C4)alkyl)-C(O)—(C1-C4)alkyl, —S(O)1-2H, —S(O)1-2(C1-C4)alkyl, —S(O)1-2OH, —S(O)1-2O(C1-C4)alkyl, —S(O)1-2NH2, —S(O)1-2NH(C1-C4)alkyl, —S(O)1-2N((C1-C4)alkyl)2, —(C1-C6)alkyl, —(C1-C6)fluoroalkyl, —(C3-C6)cycloalkyl, —(C3-C6)heterocycloalkyl, —C(O)OH, —C(O)—(C1-C4)alkyl, —C(O)NH2, —C(O)NH(C1-C4)alkyl and —C(O)N((C1-C4)alkyl)2, and when L is —C(O)—NH—CH2—, R2 is optionally the same







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    •  as defined below; or

    • (b)







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    •  in which R3 is —H, —(C1-C4)alkyl or —(C1-C4)fluoroalkyl;

    • each R4 is independently —H, —CH3 or —F;

    • R5 is —H, —F or —CH3;

    • the bond denoted by “q” is a single bond or a double bond;

    • Z is —C(O)—, —C(S)—, —S(O)2— or —CH2—;

    • G is a single bond, —CH2—, —CHD-, —CD2-, —CHF—, —CF2—, —CH(R14)—, —C(R14)2—, (C3-C5)cycloalkan-1,1-diyl, —NH—, —O— or —N(R14)— in which each R14 is independently methyl, ethyl, isopropyl or n-propyl;

    • the ring system denoted by “B” is phenyl, pyridyl, naphthyl, thiazolyl or pyrimidinyl;

    • y is 0, 1, 2, 3;

    • each R6 is independently -halogen, —CN, —NO2, —N3, —OH, —O—(C1-C4)alkyl, —O—(C1-C4)fluoroalkyl, —SH, —S—(C1-C4)alkyl, —NH2, —NH—(C1-C4)alkyl, —N((C1-C4)alkyl)2, —O—C(O)—(C1-C4)alkyl, —S—C(O)—(C1-C4)alkyl, —NH—C(O)—(C1-C4)alkyl, —N((C1-C4)alkyl)-C(O)—(C1-C4)alkyl, —S(O)1-2H, —S(O)1-2(C1-C4)alkyl, —S(O)1-2OH, —S(O)1-2O(C1-C4)alkyl, —S(O)1-2NH2, —S(O)1-2NH(C1-C4)alkyl, —S(O)1-2N((C1-C4)alkyl)2, —(C1-C6)alkyl, —(C1-C6)fluoroalkyl, —(C3-C6)cycloalkyl, —(C3-C6)heterocycloalkyl, —C(O)OH, —C(O)—(C1-C4)alkyl, —C(O)NH2, —C(O)NH(C1-C4)alkyl or —C(O)N((C1-C4)alkyl)2;

    • L is selected from the group consisting
      • of —C(O)—NH—CH2—, —C(O)—NH2—CH2—CH2—O—, —C(O)—NH—CH—(CO2R15)—, —C(O)—NH—CH(R15)—; C(O)—NH—CH(CH2OH)—,







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    •  —C(OR22)(R16)—CH2—NH—, —C(OR22)(R16)—CH2—N(C1-C4)alkyl-, —C(OR22)(R16)—CH2—O—, —C(OR22)(R24)—CH2—O—, —C(OR22)(R25)—CH2—O—, —C(OR22)(R16)—CH2—CH2—, —CH(NH2)—CH2—O—, —CH(NH(R23))—CH2—O—, —C(NH2)(R27)—CH2—O—, —C(═NHOH)—CH2—O—, —C(OR22)(R26)—CH2—O—, —C(R11)(R16)—CH2—O—CH2—, —C(R12)(R13)—CH2—NH—CH2—, —C(R12)(R13)—CH2—NH—, —C(R12)(R13)—CH2—O—, —C(R12)(R13)—CH2—, —C(R12)(R13)—CH2—S(O)0-2—, —C(O)—NH—NH—, —C(O)—NH—O—, —CH2—CH2—CH2—, —C(O)—CH2—O—, —C(O)—CH2—NH—, —CH═CH—CH2—, —C(S)—NH—CH2, and —CH2—CH═CH—, in which
      • R10 is —H, —R15, —CH2OH or —CH2F,
        • R11 is —H, —R15, —CH2OH, —CH2OCH3 or —CH2—O—CH2—CH(OH)—CH2OH,
        • R12 is —H, —F, or —R15
        • R13 is —H, —F, —R15, —CF3, CH2OH or CO2R15, or
        • R12 and R13 come together to form a 4-6 membered heterocycloalkyl;
        • R22 is H or —C(O)(C1-C4)alkyl;
        • R24 is (C1-C4)alkyl, —C(O)(C1-C4)alkyl, —C(O)—NH—(C1-C4)alkyl, —(C1-C4)alkyl-NH—C(O)(C1-C4)alkyl, —C(O)—(C1-C4)alkyl-NH—C(O)—(C1-C4)alkyl, —C(O)—(C1-C4)alkyl-OH, piperidinyl, piperazinyl or pyrrolidinyl optionally substituted at a nitrogen position with —C(O)(C1-C4)alkyl or (C1-C4)alkyl
        • R25 is piperidinyl, piperazinyl or pyrrolidinyl optionally substituted at a nitrogen position with —C(O)(C1-C4)alkyl or (C1-C4)alkyl;
        • R26 is —COOH, —COO(C1-C4)alkyl, —CN, —CONH2, CONH(C1-C4)alkyl, —(C1-C4)alkyl, —(C1-C4)alkyl-OH, —(C1-C4)alkyl-NH2, —(C1-C4)alkyl-N3, —(C1-C4)alkyl-NHR24, —CH2—R23 in which R23 is piperazinyl, piperidinyl or pyrrolidinyl optionally substituted at a nitrogen position with —C(O)(C1-C4)alkyl or (C1-C4)alkyl;
        • R27 is —CN, —CONH2, —CONH(C1-C4)alkyl, —(C1-C4)alkyl, —(C1-C4)alkyl-OH, —(C1-C4)alkyl-NH2, —(C1-C4)alkyl-N3, —(C1-C4)alkyl-NHR24, —CH2—R23 in which R23 is piperazinyl. piperidinyl or pyrrolidinyl optionally substituted at a nitrogen position with —C(O)(C1-C4)alkyl or (C1-C4)alkyl; R28 is H or (C1-C4)alkyl
        • wherein each R15 is independently methyl, ethyl, isopropyl or n-propyl, and each R16 is independently —H, methyl, ethyl, isopropyl or n-propyl;

    • the ring system denoted by “A” is phenyl, pyridyl, pyrimidyl, thiazolyl, pyrazolyl or pyrazinyl;

    • x is 0, 1, 2 or 3; and

    • each Ra is independently —H, -halogen, —CN, —NO2, —N3, —OH, —O—(C1-C4)alkyl, —O—(C1-C4)fluoroalkyl, —SH, —S—(C1-C4)alkyl, —NH2, —NH—(C1-C4)alkyl, —N((C1-C4)alkyl)2, —O—C(O)—(C1-C4)alkyl, —S—C(O)—(C1-C4)alkyl, —NH—C(O)—(C1-C4)alkyl, —N((C1-C4)alkyl)-C(O)—(C1-C4)alkyl, —S(O)1-2H, —S(O)1-2(C1-C4)alkyl, —S(O)1-2OH, —S(O)1-2O(C1-C4)alkyl, S(O)1-2NH2, —S(O)1-2NH(C1-C4)alkyl, —S(O)1-2N((C1-C4)alkyl)2, —(C1-C6)alkyl, —(C1-C6)fluoroalkyl, —(C3-C6)cycloalkyl, —(C3-C6)heterocycloalkyl, —C(O)OH, —C(O)—(C1-C4)alkyl, —C(O)NH2, —C(O)NH(C1-C4)alkyl or —C(O)N((C1-C4)alkyl)2,


      in which

    • each alkyl is optionally substituted with one or more substituents selected from the group consisting of -D, -halogen, —CN, —NO2, —O—R20, —N(R21)2 and —S(R20), in which each R20 is independently selected from the group consisting of —H, —CH3, —CH2CH3 and —CF3, and each R21 is independently selected from the group consisting of —H, —CH3 and —CH2CH3.





In another aspect, the invention comprises compounds of formula (I), and stereoisomeric forms thereof, and N-oxides thereof, and pharmaceutically acceptable salts thereof, and solvates and hydrates thereof, wherein

    • R1 is selected from the group consisting of —H, -halogen, —CN, —NO2, —OH, —O—(C1-C4)alkyl, —O—(C1-C4)fluoroalkyl, —SH, —S—(C1-C4)alkyl, —NH2, —NH—(C1-C4)alkyl, —N((C1-C4)alkyl)2, —O—C(O)—(C1-C4)alkyl, —S—C(O)—(C1-C4)alkyl, —NH—C(O)—(C1-C4)alkyl, —N((C1-C4)alkyl)-C(O)—(C1-C4)alkyl, —S(O)1-2H, —S(O)1-2(C1-C4)alkyl, —S(O)1-2OH, —S(O)1-2O(C1-C4)alkyl, —S(O)1-2NH2, —S(O)1-2NH(C1-C4)alkyl, —S(O)1-2N((C1-C4)alkyl)2, —(C1-C6)alkyl, —(C1-C6)fluoroalkyl, —(C3-C6)cycloalkyl, —(C3-C6)heterocycloalkyl, —C(O)OH, —C(O)—(C1-C4)alkyl, —C(O)NH2, —C(O)NH(C1-C4)alkyl, —C(O)N((C1-C4)alkyl)2 and phenyl optionally substituted by 1, 2 or 3 substituents selected from -halogen, —CN, —NO2, —O—R30, —N(R31)2 and —S(R30), in which each R30 is independently selected from the group consisting of —H, —CH3, —CH2CH3 and —CF3, and each R31 is independently selected from the group consisting of —H, —CH3 and —CH2CH3;
    • the




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    •  moiety has the structure
      • (a)







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    •  in which R2 is selected from the group consisting of —H, -halogen, —CN, —NO2, —N3, —OH, —O—(C1-C4)alkyl, —O—(C1-C4)fluoroalkyl, —SH, —S—(C1-C4)alkyl, —NH2, —NH—(C1-C4)alkyl, —N((C1-C4)alkyl)2, —O—C(O)—(C1-C4)alkyl, —S—C(O)—(C1-C4)alkyl, —NH—C(O)—(C1-C4)alkyl, —N((C1-C4)alkyl)-C(O)—(C1-C4)alkyl, —S(O)1-2H, —S(O)1-2(C1-C4)alkyl, —S(O)1-2OH, —S(O)1-2O(C1-C4)alkyl, —S(O)1-2NH2, —S(O)1-2NH(C1-C4)alkyl, —S(O)1-2N((C1-C4)alkyl)2, —(C1-C6)alkyl, —(C1-C6)fluoroalkyl, —(C3-C6)cycloalkyl, —(C3-C6)heterocycloalkyl, —C(O)OH, —C(O)—(C1-C4)alkyl, —C(O)NH2, —C(O)NH(C1-C4)alkyl and —C(O)N((C1-C4)alkyl)2, and when L is —C(O)—NH—CH2—, R2 is optionally the same







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    •  as defined below; or
      • (b)







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    •  R3 in which R3 is —H, —(C1-C4)alkyl or —(C1-C4)fluoroalkyl;

    • each R4 is independently —H, —CH3 or —F;

    • R5 is —H, —F or —CH3;

    • the bond denoted by “q” is a single bond or a double bond;

    • Z is —C(O)—, —C(S)—, —S(O)2— or —CH2—;

    • G is a single bond, —CH2—, —CHD-, —CD2-, —CH(R14)—, —C(R14)2—, —(C3-C5)cycloalkane-1,1-diyl, —NH— or —N(R14)— in which each R14 is independently methyl, ethyl, isopropyl or n-propyl;

    • the ring system denoted by “B” is phenyl, pyridyl, naphthyl, thiazolyl or pyrimidinyl;

    • y is 0, 1, 2, 3;

    • each R6 is independently -halogen, —CN, —NO2, —N3, —OH, —O—(C1-C4)alkyl, —O—(C1-C4)fluoroalkyl, —SH, —S—(C1-C4)alkyl, —NH2, —NH—(C1-C4)alkyl, —N((C1-C4)alkyl)2, —O—C(O)—(C1-C4)alkyl, —S—C(O)—(C1-C4)alkyl, —NH—C(O)—(C1-C4)alkyl, —N((C1-C4)alkyl)-C(O)—(C1-C4)alkyl, —S(O)1-2H, —S(O)1-2(C1-C4)alkyl, —S(O)1-2OH, —S(O)1-2O(C1-C4)alkyl, —S(O)1-2NH2, —S(O)1-2NH(C1-C4)alkyl, —S(O)1-2N((C1-C4)alkyl)2, —(C1-C6)alkyl, —(C1-C6)fluoroalkyl, —(C3-C6)cycloalkyl, —(C3-C6)heterocycloalkyl, —C(O)OH, —C(O)—(C1-C4)alkyl, —C(O)NH2, —C(O)NH(C1-C4)alkyl or —C(O)N((C1-C4)alkyl)2;

    • L is selected from the group consisting of —C(O)—NH—CH2—, —C(O)—NH2—CH2—CH2—O—, —C(O)—NH—CH—(CO2R15)—, —C(O)—NH—CH(R15)—; C(O)—NH—CH(CH2OH)—,







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    • —C(OH)(R16)—CH2—NH—, —C(OH)(R16)—CH2—O—, —C(OH)(R16)—CH2—CH2—, —C(R11)(R16)—CH2—O—CH2—, —C(R12)(R13)—CH2—NH—CH2—, —C(R12)(R13)—CH2—NH—, —C(R12)(R13)—CH2—O—, —C(R12)(R13)—CH2—S(O)0-2—, —C(O)—NH—NH—, —C(O)—NH—O—, —CH2—CH2—CH2—, —C(O)—CH2—O—, —CH═CH—CH2—, —C(S)—NH—CH2, and —CH2—CH═CH—, in which
      • R10 is —H, —R15, —CH2OH or —CH2F,
        • R11 is —H, —R15, —CH2OH, —CH2OCH3 or —CH2—O—CH2—CH(OH)—CH2OH,
        • R12 is —H, —F, or —R15, and
        • R13 is —H, —F, —R15, —CF3, CH2OH or CO2R15
        • wherein each R15 is independently methyl, ethyl, isopropyl or n-propyl, and each
          • R16 is independently —H, methyl, ethyl, isopropyl or n-propyl;

    • the ring system denoted by “A” is phenyl, pyridyl, pyrimidyl, thiazolyl, pyrazolyl or pyrazinyl;

    • x is 0, 1, 2 or 3; and

    • each Ra is independently —H, -halogen, —CN, —NO2, —N3, —OH, —O—(C1-C4)alkyl, —O—(C1-C4)fluoroalkyl, —SH, —S—(C1-C4)alkyl, —NH2, —NH—(C1-C4)alkyl, —N((C1-C4)alkyl)2, —O—C(O)—(C1-C4)alkyl, —S—C(O)—(C1-C4)alkyl, —NH—C(O)—(C1-C4)alkyl, —N((C1-C4)alkyl)-C(O)—(C1-C4)alkyl, —S(O)1-2H, —S(O)1-2(C1-C4)alkyl, —S(O)1-2OH, —S(O)1-2O(C1-C4)alkyl, S(O)1-2NH2, —S(O)1-2NH(C1-C4)alkyl, —S(O)1-2N((C1-C4)alkyl)2, —(C1-C6)alkyl, —(C1-C6)fluoroalkyl, —(C3-C6)cycloalkyl, —(C3-C6)heterocycloalkyl, —C(O)OH, —C(O)—(C1-C4)alkyl, —C(O)NH2, —C(O)NH(C1-C4)alkyl or —C(O)N((C1-C4)alkyl)2,

    • in which each alkyl is optionally substituted with one or more substituents selected from the group consisting of -D, -halogen, —CN, —NO2, —O—R20, —N(R21)2 and —S(R20), in which each R20 is independently selected from the group consisting of —H, —CH3, —CH2CH3 and —CF3, and each R21 is independently selected from the group consisting of —H, —CH3 and —CH2CH3.





In another aspect, the invention provides compounds of formula (Ia),




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and stereoisomeric forms thereof, and N-oxides thereof, and pharmaceutically acceptable salts thereof, and solvates and hydrates thereof, wherein

    • R1 is selected from the group consisting of —H, —(C1-C4)alkyl, —(C1-C4)fluoroalkyl, —(C3-C5)cycloalkyl, —OH, —O—(C1-C4)alkyl, —SH, —S—(C1-C4)alkyl, —NH2, —NH—(C1-C4)alkyl and —N((C1-C4)alkyl)2;
    • the




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    •  moiety has the structure
      • (a)







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    •  in which R2 is selected from the group consisting of —H, —(C1-C4)alkyl, —(C1-C4)fluoroalkyl, —OH, —O—(C1-C6)alkyl, —NH2, —NH—(C1-C4)alkyl and —N((C1-C4)alkyl)2, or
      • (b)







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    •  in which R3 is —H;

    • each R4 is independently H or F;

    • R5 is —H, —CH3, or —F;

    • the bond denoted by “q” is a single bond or a double bond;

    • G is a single bond, —CH2—, —CHD-, —CD2- or —NH—;

    • each R6 is independently —H, -halogen, —(C1-C4 fluoroalkyl) or —O—(C1-C4 fluoroalkyl), provided that at least one R6 is not —H;

    • L is selected from the group consisting of —C(O)—NH—CH2—,







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    •  —C(OH)(CH3)—CH2—NH—, —C(OH)(CH3)—CH2—O—, —C(R11)(CH3)—CH2—O—CH2—, —C(R12)(R13)—CH2—NH—CH2—, —C(R12)(R13)—CH2—NH—, —C(R12)(R13)—CH2—O—, —C(R12)(R13)—CH2—S(O)0-2—, and —C(O)—NH—NH—, in which
      • R10 is —H, —CH3, —CH2OH or —CH2F,
      • R11 is —H, —CH3, —CH2OH, —CH2OCH3 or —CH2—O—CH2—CH(OH)—CH2OH,
      • R12 is —H, —F, or —CH3, and
      • R13 is —H, —F, —CH3 or —CF3;

    • the ring system denoted by “A” is phenyl, pyridyl or pyrimidyl;

    • x is 1, 2 or 3; and

    • each Ra is independently -halogen, —(C1-C4)alkyl, —(C1-C4)fluoroalkyl, —O—(C1-C4)alkyl, —O—(C1-C4)fluoroalkyl, —CN or —NO2,


      in which

    • each alkyl is optionally substituted with one or more substituents selected from the group consisting of -D, -halogen, —CN, —NO2, —O—R20, —N(R21)2 and —S(R20), in which each R20 is independently selected from the group consisting of —H, —CH3, —CH2CH3 and —CF3, and each R21 is independently selected from the group consisting of —H, —CH3 and —CH2CH3.





The “L” moieties as described herein are presented with the connection to the central pyrimidine at the left, and the connection to the ring system denoted by “A” at the right.


The invention further comprises subgenera of formula (I) in which the substituents are selected as any and all combinations of one or more of R1, R2, R3, R4, R5, R6, Ra, x, y, G, L, Z, the bond denoted by “q”, the ring system denoted by “A” and the ring system denoted by “B” as defined herein, including without limitation, the following:


In certain embodiments, the compound has one of the formulae (Ib)-(Ie):




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In certain embodiments of the compounds of any of formulae (I) and (Ia)-(1e), R1 is selected from one of the following groups (1a)-(1o):

    • (1a) R1 is —H, —(C1-C2)alkyl, —(C1-C2)fluoroalkyl, —(C3-C4)cycloalkyl, —OH, —O—(C1-C2)alkyl, —SH, —S—(C1-C2)alkyl, —NH2, —NH—(C1-C2)alkyl or —N((C1-C2)alkyl)2.
    • (1b) R1 is —H, —(C1-C2)alkyl, -cyclopropyl, —O—(C1-C3)alkyl, —S—(C1-C2)alkyl, —NH2, —NH—(C1-C3)alkyl or —N((C1-C2)alkyl)2.
    • (1c) R1 is —H, —CH3, —CH2CH3, —CHD2, -cyclopropyl, —OCH3, —O—CH2CH3, —SCH3, —NH2, —NH(CH3), —NH(CH2CH3), —NH—CH2—CH2—OH, —N(CH3)2 or —NH—CH(CH3)2.
    • (1d) R1 is —H, —CH3 or —CH2CH3.
    • (1e) R1 is —CH3.
    • (1f) R1 is —H, —(C1-C2)alkyl, —(C1-C2)deuteroalkyl, —(C1-C2)fluoroalkyl, —(C3-C4)cycloalkyl, —OH, —O—(C1-C2)alkyl, —SH, —S—(C1-C2)alkyl, —NH2, —NH—(C1-C2)alkyl, —NH—CH2CH2—OH, —NH—CH2CH2—NH2, —NH—CH2CH2—NH(C1-C2)alkyl, —NH—CH2CH2—N((C1-C2)alkyl)2, or —N((C1-C2)alkyl)2, in which each alkyl is unsubstituted.
    • (1g) R1 is —H, —(C1-C4)alkyl, —(C1-C4)fluoroalkyl, —(C3-C5)cycloalkyl, —OH, —O—(C1-C4)alkyl, —SH, —S—(C1-C4)alkyl, —NH2, —NH—(C1-C4)alkyl or —N((C1-C4)alkyl)2;
    • (1h) R1 is —H, -halogen, —CN, —NO2, —N3, —OH, —O—(C1-C4)alkyl, —O—(C1-C4)fluoroalkyl, —SH, —S—(C1-C4)alkyl, —NH2, —NH—(C1-C4)alkyl, —N((C1-C4)alkyl)2, —O—C(O)—(C1-C4)alkyl, —S—C(O)—(C1-C4)alkyl, —NH—C(O)—(C1-C4)alkyl, —N((C1-C4)alkyl)-C(O)—(C1-C4)alkyl, —S(O)1-2H, —S(O)1-2(C1-C4)alkyl, —S(O)1-2OH, —S(O)1-2O(C1-C4)alkyl, —S(O)1-2NH2, —S(O)1-2NH(C1-C4)alkyl, —S(O)1-2N((C1-C4)alkyl)2, —(C1-C6)alkyl, —(C1-C6)fluoroalkyl, —(C3-C6)cycloalkyl, —(C3-C6)heterocycloalkyl, —C(O)OH, —C(O)—(C1-C4)alkyl, —C(O)NH2, —C(O)NH(C1-C4)alkyl, —C(O)N((C1-C4)alkyl)2 or phenyl in which each alkyl and phenyl is unsubstituted.
    • (1i) R1 is —H, -halogen, —CN, —NO2, —N3, —OH, —O—(C1-C2)alkyl, —O—(C1-C2)fluoroalkyl, —SH, —S—(C1-C2)alkyl, —NH2, —NH—(C1-C2)alkyl, —N((C1-C2)alkyl)2, —O—C(O)—(C1-C2)alkyl, —S—C(O)—(C1-C2)alkyl, —NH—C(O)—(C1-C2)alkyl, —N((C1-C2)alkyl)-C(O)—(C1-C2)alkyl, —S(O)1-2H, —S(O)1-2(C1-C2)alkyl, —S(O)1-2OH, —S(O)1-2O(C1-C2)alkyl, —S(O)1-2NH2, —S(O)1-2NH(C1-C2)alkyl, —S(O)1-2N((C1-C2)alkyl)2, —(C1-C2)alkyl, —(C1-C2)fluoroalkyl, —C(O)OH, —C(O)—(C1-C2)alkyl, —C(O)NH2, —C(O)NH(C1-C2)alkyl or —C(O)N((C1-C2)alkyl)2.
    • (1j) R1 is —H, -halogen, —CN, —NO2, —N3, —O—(C1-C2)alkyl, —O—(C1-C2)fluoroalkyl, —S—(C1-C2)alkyl, —NH2, —NH—(C1-C2)alkyl, —N((C1-C2)alkyl)2, —O—C(O)—(C1-C2)alkyl, —S—C(O)—(C1-C2)alkyl, —NH—C(O)—(C1-C2)alkyl, —N((C1-C2)alkyl)-C(O)—(C1-C2)alkyl, —S(O)1-2H, —S(O)1-2(C1-C2)alkyl, —S(O)1-2OH, —S(O)1-2O(C1-C2)alkyl, —S(O)1-2NH2, —S(O)1-2NH(C1-C2)alkyl, —S(O)1-2N((C1-C2)alkyl)2, —(C1-C2)alkyl, —(C1-C2)fluoroalkyl, —C(O)OH, —C(O)—(C1-C2)alkyl, —C(O)NH2, —C(O)NH(C1-C2)alkyl or —C(O)N((C1-C2)alkyl)2.
    • (1k) R1 is phenyl, optionally substituted by 1, 2 or 3 substituents selected from -halogen, —CN, —NO2, —O—R30, —N(R31)2 and —S(R30), in which each R30 is independently selected from the group consisting of —H, —CH3, —CH2CH3 and —CF3, and each R31 is independently selected from the group consisting of —H, —CH3 and —CH2CH3
    • (1l) R1 is —NH—(C1-C4)fluoroalkyl, —N((C1-C4)fluoroalkyl)2, or —NH—(C3-C6 cycloalkyl).
    • (1m) R1 is —NH—CH2-phenyl.
    • (1n) R1 is —O—(C1-C4)fluoroalkyl.
    • (1o) R1 is selected from the group consisting of —H, -halogen, —CN, —NO2, —OH, —O—(C1-C4)alkyl, —O—(C1-C4)fluoroalkyl, —SH, —S—(C1-C4)alkyl, —NH2, —NH—(C1-C4)alkyl, —NH—(C1-C4)fluoroalkyl, —N((C1-C4)alkyl)2, —N((C1-C4)fluoroalkyl)2, —NH—(C3-C6)cycloalkyl, —O—C(O)—(C1-C4)alkyl, —S—C(O)—(C1-C4)alkyl, —NH—C(O)—(C1-C4)alkyl, —N((C1-C4)alkyl)-C(O)—(C1-C4)alkyl, —S(O)1-2H, —S(O)1-2(C1-C4)alkyl, —S(O)1-2OH, —S(O)1-2O(C1-C4)alkyl, —S(O)1-2NH2, —S(O)1-2NH(C1-C4)alkyl, —S(O)1-2N((C1-C4)alkyl)2, —(C1-C6)alkyl, —(C1-C6)fluoroalkyl, —(C3-C6)cycloalkyl, —(C3-C6)heterocycloalkyl, —C(O)OH, —C(O)—(C1-C4)alkyl, —C(O)N H2, —C(O)NH(C1-C4)alkyl, —C(O)N((C1-C4)alkyl)2, —NH—CH2-phenyl and phenyl, wherein each phenyl is optionally substituted by 1, 2 or 3 substituents selected from -halogen, —CN, —NO2, —O—R30, —N(R31)2 and —S(R30), in which each R30 is independently selected from the group consisting of —H, —CH3, —CH2CH3 and —CF3, and each R31 is independently selected from the group consisting of —H, —CH3 and —CH2CH3.


In certain embodiments of the compounds of any of formulae (I), (Ia), (Ib) and (Id) as described above, R2 is selected from one of the following groups (2a)-(2l):

    • (2a) R2 is —H, —(C1-C2)alkyl, —(C1-C2)fluoroalkyl, —(C3-C4)cycloalkyl, —OH, —O—(C1-C2)alkyl, —SH, —S—(C1-C2)alkyl, —NH2, —NH—(C1-C2)alkyl and —N((C1-C2)alkyl)2.
    • (2b) R2 is —H, —(C1-C2)alkyl, —(C1-C2)fluoroalkyl, —(C3-C4)cycloalkyl, —O—(C1-C2)alkyl, —S—(C1-C2)alkyl, —NH—(C1-C2)alkyl and —N((C1-C2)alkyl)2.
    • (2c) R2 is —H, —CH3, —NH(CH3), —OCH3 or —CF3.
    • (2d) R2 is —H.
    • (2e) R2 is —CH3.
    • (2f) R2 is —H, —(C1-C4)alkyl, —(C1-C4)fluoroalkyl, —OH, —O—(C1-C6)alkyl, —NH2, —NH—(C1-C4)alkyl or —N((C1-C4)alkyl)2.
    • (2g) R2 is —H, —(C1-C2)alkyl, —(C1-C2)deuteroalkyl, —(C1-C2)fluoroalkyl, —(C3-C4)cycloalkyl, —OH, —O—(C1-C2)alkyl, —SH, —S—(C1-C2)alkyl, —NH2, —NH—(C1-C2)alkyl and —N((C1-C2)alkyl)2, in which each alkyl is unsubstituted.
    • (2h) R2 is —H, -halogen, —CN, —NO2, —N3, —OH, —O—(C1-C4)alkyl, —O—(C1-C4)fluoroalkyl, —SH, —S—(C1-C4)alkyl, —NH2, —NH—(C1-C4)alkyl, —N((C1-C4)alkyl)2, —O—C(O)—(C1-C4)alkyl, —S—C(O)—(C1-C4)alkyl, —NH—C(O)—(C1-C4)alkyl, —N((C1-C4)alkyl)-C(O)—(C1-C4)alkyl, —S(O)1-2H, —S(O)1-2(C1-C4)alkyl, —S(O)1-2OH, —S(O)1-2O(C1-C4)alkyl, —S(O)1-2NH2, —S(O)1-2NH(C1-C4)alkyl, —S(O)1-2N((C1-C4)alkyl)2, —(C1-C6)alkyl, —(C1-C6)fluoroalkyl, —(C3-C6)cycloalkyl, —(C3-C6)heterocycloalkyl, —C(O)OH, —C(O)—(C1-C4)alkyl, —C(O)NH2, —C(O)NH(C1-C4)alkyl or —C(O)N((C1-C4)alkyl)2 in which each alkyl is unsubstituted.
    • (2i) R2 is —H, -halogen, —CN, —NO2, —N3, —OH, —O—(C1-C2)alkyl, —O—(C1-C2)fluoroalkyl, —SH, —S—(C1-C2)alkyl, —NH2, —NH—(C1-C2)alkyl, —N((C1-C2)alkyl)2, —O—C(O)—(C1-C2)alkyl, —S—C(O)—(C1-C2)alkyl, —NH—C(O)—(C1-C2)alkyl, —N((C1-C2)alkyl)-C(O)—(C1-C2)alkyl, —S(O)1-2H, —S(O)1-2(C1-C2)alkyl, —S(O)1-2OH, —S(O)1-2O(C1-C2)alkyl, —S(O)1-2NH2, —S(O)1-2NH(C1-C2)alkyl, —S(O)1-2N((C1-C2)alkyl)2, —(C1-C2)alkyl, —(C1-C2)fluoroalkyl, —C(O)OH, —C(O)—(C1-C2)alkyl, —C(O)NH2, —C(O)NH(C1-C2)alkyl or —C(O)N((C1-C2)alkyl)2.
    • (2j) R2 is —H, -halogen, —CN, —NO2, —N3, —O—(C1-C2)alkyl, —O—(C1-C2)fluoroalkyl, —S—(C1-C2)alkyl, —NH2, —NH—(C1-C2)alkyl, —N((C1-C2)alkyl)2, —O—C(O)—(C1-C2)alkyl, —S—C(O)—(C1-C2)alkyl, —NH—C(O)—(C1-C2)alkyl, —N((C1-C2)alkyl)-C(O)—(C1-C2)alkyl, —S(O)1-2H, —S(O)1-2(C1-C2)alkyl, —S(O)1-2OH, —S(O)1-2O(C1-C2)alkyl, —S(O)1-2NH2, —S(O)1-2NH(C1-C2)alkyl, —S(O)1-2N((C1-C2)alkyl)2, —(C1-C2)alkyl, —(C1-C2)fluoroalkyl, —C(O)OH, —C(O)—(C1-C2)alkyl, —C(O)NH2, —C(O)NH(C1-C2)alkyl or —C(O)N((C1-C2)alkyl)2.
    • (2k) when L is —C(O)—NH—CH2—, R2 is optionally the same




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    •  as defined above and in groups (Aa-Ai), (xa)-(xe) and (aa)-(ah) and (A-xa)-(A-xs) below.

    • (2l) R2 is —H, -halogen, —CN, —NO2, —N3, —OH, —O—(C1-C4)alkyl, —O—(C1-C4)fluoroalkyl, —SH, —S—(C1-C4)alkyl, —NH2, —NH—(C1-C4)alkyl, —N((C1-C4)alkyl)2, —O—C(O)—(C1-C4)alkyl, —S—C(O)—(C1-C4)alkyl, —NH—C(O)—(C1-C4)alkyl, —N((C1-C4)alkyl)-C(O)—(C1-C4)alkyl, —S(O)1-2H, —S(O)1-2(C1-C4)alkyl, —S(O)1-2OH, —S(O)1-2O(C1-C4)alkyl, —S(O)1-2NH2, —S(O)1-2NH(C1-C4)alkyl, —S(O)1-2N((C1-C4)alkyl)2, —(C1-C6)alkyl, —(C1-C6)fluoroalkyl, —(C3-C6)cycloalkyl, —(C3-C6)heterocycloalkyl, —C(O)OH, —C(O)—(C1-C4)alkyl, —C(O)NH2, —C(O)NH(C1-C4)alkyl or —C(O)N((C1-C4)alkyl)2,





In certain embodiments of the compounds of any of formulae (I), (Ia), (Ic) and (Ie) as described above, R3 is selected from one of the following groups (3a)-(3d):

    • (3a) R3 is —H.
    • (3b) R3 is —H, —(C1-C4)alkyl or —(C1-C4)fluoroalkyl in which the alkyl is unsubstituted;
    • (3c) R3 is —CH3 or —CH2CH3.
    • (3d) R3 is —H, —(C1-C4)alkyl or —(C1-C4)fluoroalkyl.


In certain embodiments of the compounds of any of formulae (I) and (Ia)-(Ie) as described above, the R4 are defined as in one of the following groups (4a)-(4f):

    • (4a) both R4 are —H.
    • (4b) both R4 are —F.
    • (4c) one R4 is —H and the other is —F.
    • (4d) one R4 is —H and the other is CH3.
    • (4e) each R4 is independently H, —CH3 or —F.
    • (4f) each R4 is H or F.
    • In certain embodiments of the compounds of any of formulae (I) and (Ia)-(Ie) as described herein, both R4 are bound to the carbon in the alpha position relative to the carbon to which R5 and the pyrimidine are bound (i.e., at the 3-position of the piperidine).


In certain embodiments of the compounds of any of formulae (I) and (Ia)-(Ie) as described above, R5 is selected from one of the following groups (5a)-(5e):

    • (5a) R5 is —H.
    • (5b) R5 is —F.
    • (5c) R5 is —H or —F.
    • (5d) R5 is —CH3.
    • (5e) R5 is —H, —F or —CH3.


In certain embodiments of the compounds of any of formulae (I) and (Ia)-(Ie) as described above, the bond denoted by “q” is selected from one of the following (q-1)-(q-2):

    • (q-1) the bond denoted by “q” is a single bond.
    • (q-2) the bond denoted by “q” is a double bond.


In certain embodiments of the compounds of any of formulae (I) and (Ia)-(Ie) as described above, the combination of the bond denoted by “q”, the R4 and R5 is selected from one of the following groups (q-4-5a)-(q-4-5f):

    • (q-4-5a) the bond denoted by “q” is a single bond, both R4 are H, and R5 is H.
    • (q-4-5b) the bond denoted by “q” is a double bond, both R4 are H, and R5 is H.
    • (q-4-5c) the bond denoted by “q” is a single bond, both R4 are H, and R5 is F.
    • (q-4-5d) the bond denoted by “q” is a single bond, both R4 are F, and R5 is H.
    • (q-4-5e) the bond denoted by “q” is a single bond, both R4 are H, and R5 is —CH3.
    • (q-4-5f) the bond denoted by “q” is a single bond or a double bond, each R4 is independently H or F; and R5 is —H, —CH3, or —F.


In certain embodiments of the compounds of any of formulae (I), (Ib) and (Ic) as described above, Z is selected from one of the following groups (Za)-(Zd):

    • (Za) Z is —C(O)—.
    • (Zb) Z is —C(S)—.
    • (Zc) Z is —S(O)2—.
    • (Zd) Z is —CH2—.


In certain embodiments of the compounds of any of formulae (I) and (Ia)-(Ie) as described above, G is selected from one of the following groups (Ga)-(Gk):

    • (Ga) G is —CH2—, —CHD- or —CD2-.
    • (Gb) G is —NH—.
    • (Gc) G is —CH2—.
    • (Gd) G is a single bond.
    • (Ge) G is —CH(R14)—, —C(R14)2— in which each R14 is independently methyl, ethyl, isopropyl or n-propyl. In certain such embodiments, each R14 is methyl.
    • (Gf) G is (C3-C5)cycloalkan-1,1-diyl. In certain such embodiments, G is cyclopropan-1,1-diyl or cyclopentan-1,1-diyl.
    • (Gg) G is —N(R14)— in which each R14 is independently methyl, ethyl, isopropyl or n-propyl. In certain such embodiments, each R14 is methyl.
    • (Gh) G is —CHF—, —CF2— or —O—.
    • (Gh) G is —CF2—.
    • (Gi) G is —O—.
    • (Gj) G is a single bond, —CH2—, —CHD-, —CD2-, —CH(R14)—, —C(R14)2—, (C3-C5)cycloalkan-1,1-diyl, —NH— or —N(R14)— in which each R14 is independently methyl, ethyl, isopropyl or n-propyl.
    • (Gk) G is a single bond, —CH2—, —CHD-, —CD2- or —NH—.


In certain embodiments of the compounds of any of formula (I) and (Ia)-(Ie) as described above, the ring system denoted by “B” is selected from one of the following groups (Ba)-(Bg):

    • (Ba) the ring system denoted by “B” is phenyl.
    • (Bb) the ring system denoted by “B” is pyridyl.
    • (Bc) the ring system denoted by “B” is pyrid-2-yl.
    • (Bd) the ring system denoted by “B” is naphthyl.
    • (Be) the ring system denoted by “B” is naphth-1-yl.
    • (Bf) the ring system denoted by “B” is thiazolyl.
    • (Bg) the ring system denoted by “B” is pyrimidinyl.


In certain embodiments of the compounds of any of formula (I) and (Ia)-(Ie) as described above, y is selected from one of the following groups (ya)-(yc):

    • (ya) y is 1 or 2.
    • (yb) y is 1.
    • (yc) y is 2.
    • (yd) y is 0.


In certain embodiments of the compounds of any of formula (I) and (Ia)-(Ie) as described above, each R6 is selected from one of the following groups (6a)-(6m):

    • (6a) each R6 is independently —H, -halogen, —(C1-C2 fluoroalkyl) or —O—(C1-C2 fluoroalkyl), provided that y is at least 1.
    • (6b) each R6 is independently —H, -halogen, —(C1-C2 fluoroalkyl) or —O—(C1-C2 fluoroalkyl), provided that y is at least 1.
    • (6c) each R6 is independently -halogen, —(C1-C2 fluoroalkyl) or —O—(C1-C2 fluoroalkyl), provided that y is at least 1.
    • (6d) each R6 is independently, —H, —F, —Cl, —CF3 or —O—CF3, provided that y is at least 1.
    • (6e) each R6 is independently, —F, —Cl, —CF3 or —O—CF3, provided that y is at least 1.
    • (6f) each R6 is independently —F, —Cl or —CF3, provided that y is at least 1.
    • (6g) each R6 is —F.
    • (6h) each R6 is independently -halogen, —(C1-C4 fluoroalkyl) or —O—(C1-C4 fluoroalkyl), provided that y is at least 1.
    • (6i) each R6 is independently -halogen, —CN, —NO2, —N3, —OH, —O—(C1-C4)alkyl, —O—(C1-C4)fluoroalkyl, —SH, —S—(C1-C4)alkyl, —NH2, —NH—(C1-C4)alkyl, —N((C1-C4)alkyl)2, —O—C(O)—(C1-C4)alkyl, —S—C(O)—(C1-C4)alkyl, —NH—C(O)—(C1-C4)alkyl, —N((C1-C4)alkyl)-C(O)—(C1-C4)alkyl, —S(O)1-2H, —S(O)1-2(C1-C4)alkyl, —S(O)1-2OH, —S(O)1-2O(C1-C4)alkyl, —S(O)1-2NH2, —S(O)1-2NH(C1-C4)alkyl, —S(O)1-2N((C1-C4)alkyl)2, —(C1-C6)alkyl, —(C1-C6)fluoroalkyl, —(C3-C6)cycloalkyl, —(C3-C6)heterocycloalkyl, —C(O)OH, —C(O)—(C1-C4)alkyl, —C(O)NH2, —C(O)NH(C1-C4)alkyl or —C(O)N((C1-C4)alkyl)2 in which each alkyl is unsubstituted.
    • (6j) each R6 is independently -halogen, —CN, —NO2, —N3, —OH, —O—(C1-C2)alkyl, —O—(C1-C2)fluoroalkyl, —SH, —S—(C1-C2)alkyl, —NH2, —NH—(C1-C2)alkyl, —N((C1-C2)alkyl)2, —O—C(O)—(C1-C2)alkyl, —S—C(O)—(C1-C2)alkyl, —NH—C(O)—(C1-C2)alkyl, —N((C1-C2)alkyl)-C(O)—(C1-C2)alkyl, —S(O)1-2H, —S(O)1-2(C1-C2)alkyl, —S(O)1-2OH, —S(O)1-2O(C1-C2)alkyl, —S(O)1-2NH2, —S(O)1-2NH(C1-C2)alkyl, —S(O)1-2N((C1-C2)alkyl)2, —(C1-C2)alkyl, —(C1-C2)fluoroalkyl, —C(O)OH, —C(O)—(C1-C2)alkyl, —C(O)NH2, —C(O)NH(C1-C2)alkyl or —C(O)N((C1-C2)alkyl)2.
    • (6k) each R6 is independently —H, -halogen, —(C1-C4 fluoroalkyl) or —O—(C1-C4 fluoroalkyl), provided that at least one R6 is not —H.
    • (6l) each R6 is independently -halogen, —CN, —NO2, —N3, —OH, —O—(C1-C4)alkyl, —O—(C1-C4)fluoroalkyl, —SH, —S—(C1-C4)alkyl, —NH2, —NH—(C1-C4)alkyl, —N((C1-C4)alkyl)2, —O—C(O)—(C1-C4)alkyl, —S—C(O)—(C1-C4)alkyl, —NH—C(O)—(C1-C4)alkyl, —N((C1-C4)alkyl)-C(O)—(C1-C4)alkyl, —S(O)1-2H, —S(O)1-2(C1-C4)alkyl, —S(O)1-2OH, —S(O)1-2O(C1-C4)alkyl, —S(O)1-2NH2, —S(O)1-2NH(C1-C4)alkyl, —S(O)1-2N((C1-C4)alkyl)2, —(C1-C6)alkyl, —(C1-C6)fluoroalkyl, —(C3-C6)cycloalkyl, —(C3-C6)heterocycloalkyl, —C(O)OH, —C(O)—(C1-C4)alkyl, —C(O)NH2, —C(O)NH(C1-C4)alkyl or —C(O)N((C1-C4)alkyl)2.
    • (6m) As otherwise described herein, in which at least one R6 is not H.


In certain embodiments of the compounds of any of formula (I), (Ib) and (Ic) as described above, the ring system denoted by “B” and y are selected such that the




embedded image


moiety has the structure (B-ya):




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in which each R18 is R6 or H provided that at least one R18 is not H.


In certain embodiments of the compounds of any of formula (I) and (Ia)-(Ie) as described above, L is selected from one of the following groups (La)-(Lv):

    • (La) L is —C(O)—NH—CH2—, —C(O)—NH—CHD- or —C(O)—NH—CD2-.
    • (Lb) L is




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    •  in which R10 is —H, —CH3, —CH2OH or —CH2F.

    • (Lc) L is







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    • (Ld) L is







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    • (Le) L is —C(OH)(CH3)—CH2—NH— or —C(OH)(CH3)—CH2—O—.

    • (Lf) L is —C(R11)(CH3)—CH2—O—CH2—, in which R11 is —H, —CH3, —CH2OH, —CH2OCH3 or —CH2—O—CH2—CH(OH)—CH2OH.

    • (Lg) L is —C(R12)(R13)—CH2—NH—CH2— or —C(R12)(R13)—CH2—NH—, in which R12 is H, —F or CH3, and R13 is H, —FCH3 or CF3. In certain such embodiments, L is —C(CH3)(CH3)—CH2—NH—, —CH(CF3)—CH2—NH—CH2—, —CH(CH3)—CH2—NH—CH2— or —CH2—CH2—NH—CH2—.

    • (Lh) L is —C(R12)(R13)—CH2—O— or —C(R12)(R13)—CH2—S(O)0-2—, in which R12 is H or CH3, and R13 is H, CH3 or CF3. In certain such embodiments, L is —CH2—CH2—O—.

    • (Li) L is —C(O)—NH—NH—.

    • (Lj) L is —C(O)—NH2—CH2—CH2—O—, —C(O)—NH—CH—(CO2R15)—, —C(O)—NH—CH(R15)—; —C(O)—NH—CH(CH2OH)—, in which each R15 is independently methyl, ethyl, isopropyl or n-propyl. In certain such embodiments, each R15 is methyl.

    • (Lk) L is







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    • (Ll) L is







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    • (Lm) L is —C(OH)(R16)—CH2—NH—, —C(OH)(R16)—CH2—O—, —C(OH)(R16)—CH2—CH2—, in which each R16 is independently —H, methyl, ethyl, isopropyl or n-propyl. In certain such embodiments, L is —C(OH)(CH3)—CH2—CH2—.

    • (Ln) L is —C(R11)(R16)—CH2—O—CH2— in which R11 is —H, —CH3, —CH2OH, —CH2OCH3 or —CH2—O—CH2—CH(OH)—CH2OH and R16 is —H, methyl, ethyl, isopropyl or n-propyl.

    • (Lo) L is —C(O)—NH—O—, —CH2—CH2—CH2—, —C(O)—CH2—O—, —CH═CH—CH2—, —C(S)—NH—CH2, or —CH2—CH═CH—.

    • (Lp) L is —C(O)—NH—CH2—, —C(O)—NH2—CH2—CH2—O—, —C(O)—NH—CH—(CO2R15)—, —C(O)—NH—CH(R15)—; C(O)—NH—CH(CH2OH)—,







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    •  —C(OH)(R16)—CH2—NH—, —C(OH)(R16)—CH2—O—, —C(OH)(R16)—CH2—CH2—, —C(R11)(R16)—CH2—O—CH2—, —C(R12)(R13)—CH2—NH—CH2—, —C(R12)(R13)—CH2—NH—, —C(R12)(R13)—CH2—O—, —C(R12)(R13)—CH2—S(O)0-2—, —C(O)—NH—NH—, —C(O)—NH—O—, —CH2—CH2—CH2—, —C(O)—CH2—O—, —CH═CH—CH2—, —C(S)—NH—CH2, or —CH2—CH═CH—, in which
      • R10 is —H, —R15, —CH2OH or —CH2F,
      • R11 is —H, —R15, —CH2OH, —CH2OCH3 or —CH2—O—CH2—CH(OH)—CH2OH,
      • R12 is —H, —F, or —R15, and
      • R13 is —H, —F, —R15, —CF3, CH2OH or CO2R15
      • wherein each R15 is independently methyl, ethyl, isopropyl or n-propyl, and each R16 is independently —H, methyl, ethyl, isopropyl or n-propyl.

    • (Lp) L is —C(O)—NH—CH2—,







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    •  —C(OH)(CH3)—CH2—NH—, —C(OH)(CH3)—CH2—O—, —C(R11)(CH3)—CH2—O—CH2—, —C(R12)(R13)—CH2—NH—CH2—, —C(R12)(R13)—CH2—NH—, —C(R12)(R13)—CH2—O—, —C(R12)(R13)—CH2—S(O)0-2—, or —C(O)—NH—NH—, in which
      • R10 is —H, —CH3, —CH2OH or —CH2F,
      • R11 is —H, —CH3, —CH2OH, —CH2OCH3 or —CH2—O—CH2—CH(OH)—CH2OH,
      • R12 is —H, —F, or —CH3, and
      • R13 is —H, —F, —CH3 or —CF3.

    • (Lq) L is







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    •  —C(OR22)(R16)—CH2—NH—, —C(OR22)(R16)—CH2—N(C1-C4)alkyl-, —C(OR22)(R16)—CH2—O—, —C(OR22)(R24)—CH2—O—, —C(OR22)(R25)—CH2—O—, —C(OR22)(R16)—CH2—CH2—, —CH(NH2)—CH2—O—, —CH(NH(R23))—CH2—O—, —C(NH2)(R27)—CH2—O—, —C(═NHOH)—CH2—O—, —C(OR22)(R26)—CH2—O—, —C(R12)(R13)—CH2— or —C(O)—CH2—NH—.

    • (Lr) L is —C(CH3)(OH)—CH2—, —CH(OH)—CH2—O—, —CH(OC(O)CH3)—CH2—O, —CHF—CH2—O—, —CH(NH2)—CH2—O—, —C(═NHOH)—CH2—O— or —CH(NHCH3)—CH2—O—.

    • (Ls) L is —CF2—CH2—O— or —CF2—CH2—NH—.

    • (Lt) L is —CH(NH(R23)—CH2—O— in which R23 is 1-acetyl-piperidin-4-yl.

    • (Lu) L is —CH(OH)(R26)—CH2—O—, in which R26 is —CH2CH2OH, —CH2CH2NH2, —CH2OH, —CH2N3, —CH2NH2, —CH2NHC(O)NHCH2CH3, —CH2NHC(O)CH3, —CH2NHCH2CH2NHC(O)CH3, —CH2—(1-acetylpiperazin-4-yl), —CH2—NH-(1-acetylpyrrolidin-3-yl), —CH2NHC(O)CH2CH2NHC(O)CH3, —CH2NHC(O)CH2CH2OH, —CH2NHC(O)CH3, —COOH, —CONHCH3.

    • (Lv) L is —C(NH2)(R27)—CH2—O—, in which R27 is —CN or —CONH2.





In certain embodiments of the compounds of any of formula (I) and (Ia)-(Ie) as described above, the ring system denoted by “A” is selected from one of the following groups (Aa)-(Ai):

    • (Aa) the ring system denoted by “A” is phenyl.
    • (Ab) the ring system denoted by “A” is pyridyl.
    • (Ac) the ring system denoted by “A” is pyrid-2-yl or pyrid-4-yl.
    • (Ad) the ring system denoted by “A” is pyrimidyl.
    • (Ae) the ring system denoted by “A” is pyrimid-2-yl or pyrimid-4-yl.
    • (Af) the ring system denoted by “A” is thiazolyl, pyrazolyl or pyrazinyl.
    • (Ag) the ring system denoted by “A” is thiazol-5-yl, pyrazol-3-yl or pyrazin-2-yl.
    • (Ah) the ring system denoted by “A” is phenyl, pyridyl, pyrimidyl, thiazolyl, pyrazolyl or pyrazinyl.
    • (Ai) the ring system denoted by “A” is phenyl, pyridyl or pyrimidyl.


In certain embodiments of the compounds of any of formula (I) and (Ia)-(Ie) as described above, x is selected from one of the following groups (xa)-(xe):

    • (xa) x is 1 or 2.
    • (xb) x is 1.
    • (xc) x is 2.
    • (xd) x is 1, 2 or 3.
    • (xe) x is 0.


In certain embodiments of the compounds of any of formula (I) and (Ia)-(Ie) as described above, the ring system denoted by “A” and x are selected to form a residue selected from one of the following (A-xa)-(A-xs):




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In certain embodiments of the compounds of any of formula (I) and (Ia)-(Ie) as described above, each Ra is selected from one of the following groups (aa)-(ah):

    • (aa) each Ra is independently -halogen, —(C1-C2)alkyl, —(C1-C2)fluoroalkyl, —O—(C1-C2)alkyl, —O—(C1-C2)fluoroalkyl, —CN or —NO2.
    • (ab) each Ra is independently —F, —Cl, —CH3, —CF3, —CF2CH3, —OCH3, —OCF3 or —CN.
    • (ac) each Ra is independently -halogen, —(C1-C4)alkyl, —(C1-C4)fluoroalkyl, —O—(C1-C4)alkyl, —O—(C1-C4)fluoroalkyl, —CN or —NO2, in which each alkyl is unsubstituted.
    • (ad) each Ra is independently -halogen, —(C1-C4)alkyl, —(C1-C4)fluoroalkyl, —O—(C1-C4)alkyl, —O—(C1-C4)fluoroalkyl, —CN or —NO2.
    • (ae) each Ra is independently —H, -halogen, —CN, —NO2, —N3, —OH, —O—(C1-C4)alkyl, —O—(C1-C4)fluoroalkyl, —SH, —S—(C1-C4)alkyl, —NH2, —NH—(C1-C4)alkyl, —N((C1-C4)alkyl)2, —O—C(O)—(C1-C4)alkyl, —S—C(O)—(C1-C4)alkyl, —NH—C(O)—(C1-C4)alkyl, —N((C1-C4)alkyl)-C(O)—(C1-C4)alkyl, —S(O)1-2H, —S(O)1-2(C1-C4)alkyl, —S(O)1-2OH, —S(O)1-2O(C1-C4)alkyl, —S(O)1-2NH2, —S(O)1-2NH(C1-C4)alkyl, —S(O)1-2N((C1-C4)alkyl)2, —(C1-C6)alkyl, —(C1-C6)fluoroalkyl, —(C3-C6)cycloalkyl, —(C3-C6)heterocycloalkyl, —C(O)OH, —C(O)—(C1-C4)alkyl, —C(O)NH2, —C(O)NH(C1-C4)alkyl or —C(O)N((C1-C4)alkyl)2 in which each alkyl is unsubstituted.
    • (af) each Ra is independently —H, -halogen, —CN, —NO2, —N3, —OH, —O—(C1-C2)alkyl, —O—(C1-C2)fluoroalkyl, —SH, —S—(C1-C2)alkyl, —NH2, —NH—(C1-C2)alkyl, —N((C1-C2)alkyl)2, —O—C(O)—(C1-C2)alkyl, —S—C(O)—(C1-C2)alkyl, —NH—C(O)—(C1-C2)alkyl, —N((C1-C2)alkyl)-C(O)—(C1-C2)alkyl, —S(O)1-2H, —S(O)1-2(C1-C2)alkyl, —S(O)1-2OH, —S(O)1-2O(C1-C2)alkyl, —S(O)1-2NH2, —S(O)1-2NH(C1-C2)alkyl, —S(O)1-2N((C1-C2)alkyl)2, —(C1-C2)alkyl, —(C1-C2)fluoroalkyl, —C(O)OH, —C(O)—(C1-C2)alkyl, —C(O)NH2, —C(O)NH(C1-C2)alkyl or —C(O)N((C1-C2)alkyl)2.
    • (ag) each Ra is independently —H, -halogen, —CN, —NO2, —N3, —OH, —O—(C1-C4)alkyl, —O—(C1-C4)fluoroalkyl, —SH, —S—(C1-C4)alkyl, —NH2, —NH—(C1-C4)alkyl, —N((C1-C4)alkyl)2, —O—C(O)—(C1-C4)alkyl, —S—C(O)—(C1-C4)alkyl, —NH—C(O)—(C1-C4)alkyl, —N((C1-C4)alkyl)-C(O)—(C1-C4)alkyl, —S(O)1-2H, —S(O)1-2(C1-C4)alkyl, —S(O)1-2OH, —S(O)1-2O(C1-C4)alkyl, S(O)1-2NH2, —S(O)1-2NH(C1-C4)alkyl, —S(O)1-2N((C1-C4)alkyl)2, —(C1-C6)alkyl, —(C1-C6)fluoroalkyl, —(C3-C6)cycloalkyl, —(C3-C6)heterocycloalkyl, —C(O)OH, —C(O)—(C1-C4)alkyl, —C(O)NH2, —C(O)NH(C1-C4)alkyl or —C(O)N((C1-C4)alkyl)2.
    • (ah) each Ra is independently -halogen, —(C1-C4)alkyl, —(C1-C4)fluoroalkyl, —O—(C1-C4)alkyl, —O—(C1-C4)fluoroalkyl, —CN or —NO2.


In certain embodiments of the compounds of any of formula (I) and (Ia)-(Ie) as described above, the combination of the ring system denoted by “A”, x and all Ra groups combine to form a residue selected from one of the following (A-x-aa)-(A-x-aad):

    • (A-x-aa) 3-chlorophenyl
    • (A-x-ab) 3,5-dimethylphenyl
    • (A-x-ac) 3-chloro-5-fluorophenyl
    • (A-x-ad) 5-chloro-2-fluorophenyl
    • (A-x-ae) 3-fluorophenyl
    • (A-x-af) 6-(trifluoromethyl)pyridin-2-yl
    • (A-x-ag) 3-(trifluoromethyl)phenyl
    • (A-x-ah) 2-(trifluoromethyl)pyridin-4-yl
    • (A-x-ai) 3,4-dichlorophenyl
    • (A-x-aj) 3,5-dichloropyridin-4-yl
    • (A-x-ak) 3-cyanophenyl
    • (A-x-al) 3,5-dichlorophenyl
    • (A-x-am) 3-chloro-5-methoxypyridin-4-yl
    • (A-x-an) 3-(trifluoromethoxy)phenyl
    • (A-x-ao) 3-chloro-2-fluorophenyl
    • (A-x-ap) 2-cyanopyridin-4-yl
    • (A-x-aq) 2-chloropyridin-4-yl
    • (A-x-ar) 3-methoxyphenyl
    • (A-x-as) 4-chloro-2-methylphenyl
    • (A-x-at) 3-methylphenyl
    • (A-x-au) 5-fluoro-2-methylphenyl
    • (A-x-av) 2-(trifluoromethyl)pyrimidin-4-yl
    • (A-x-aw) 2,5-dimethylphenyl
    • (A-x-ax) 2-(1,1-difluoroethyl)pyrimidin-4-yl
    • (A-x-ay) 6-chloropyridin-2-yl
    • (A-x-az) 4,6-dimethylpyridin-2-yl
    • (A-x-aaa) 4-(trifluoromethyl)pyrimidin-2-yl
    • (A-x-aab) 6-methyl-2-(trifluoromethyl)pyrimidin-4-yl
    • (A-x-aac) 2-chloro-6-(trifluoromethyl)pyridin-4-yl
    • (A-x-aad) 2,6-difluoropyridin-4-yl


Particular embodiments according to this aspect of the invention include compounds of Formula (I) as defined in each of the following rows, in which each entry is a group number as defined above (e.g., (1e) indicates that R1 is —CH3), and a dash “-” indicates that the variable is as defined for formula (I) or is defined according to any applicable variable definition above (e.g., when the R1 column is “-”, R1 can be defined as for Formula (I) or any one of definitions (1a)-(1o)).























Form.


R4-R5-“q”










(I)*
R1
R2/R3
bond
Z
G
B-y
R6
L
“A”
x
Ra







(Ia)
(1a)
(2a)
(q-4-5a)
(Za)
(Ga)
(B-ya)
(6a)
(La)
(Aa)-(Ae)
(xd)
(ad)


(Ia)
(1a)
(2a)
(q-4-5a)
(Za)
(Ga)
(B-ya)
(6a)
(Lb)
(Aa)-(Ae)
(xd)
(ad)


(Ia)
(1a)
(2a)
(q-4-5a)
(Za)
(Ga)
(B-ya)
(6a)
(Lc)
(Aa)-(Ae)
(xd)
(ad)


(Ia)
(1a)
(2a)
(q-4-5a)
(Za)
(Ga)
(B-ya)
(6a)
(Le)
(Aa)-(Ae)
(xd)
(ad)


(Ia)
(1a)
(2a)
(q-4-5a)
(Za)
(Ga)
(B-ya)
(6a)
(Lf)
(Aa)-(Ae)
(xd)
(ad)


(Ia)
(1a)
(2a)
(q-4-5a)
(Za)
(Ga)
(B-ya)
(6a)
(Lg)
(Aa)-(Ae)
(xd)
(ad)


(Ia)
(1a)
(2a)
(q-4-5a)
(Za)
(Ga)
(B-ya)
(6a)
(Li)
(Aa)-(Ae)
(xd)
(ad)


(Ia)
(1a)
(2a)
(q-4-5a)-
(Za)
(Ga)
(B-ya)
(6a)
(La)
(Aa)
(xa)
(ad)





(q-4-5d)










(Ia)
(1a)
(2a)
(q-4-5a)-
(Za)
(Ga)
(B-ya)
(6a)
(La)
(Ab)
(xa)
(ad)





(q-4-5d)










(Ia)
(1a)
(2a)
(q-4-5a)-
(Za)
(Ga)
(B-ya)
(6a)
(Lb)
(Aa)
(xa)
(ad)





(q-4-5d)










(Ia)
(1a)
(2a)
(q-4-5a)-
(Za)
(Ga)
(B-ya)
(6a)
(Lb)
(Ab)
(xa)
(ad)





(q-4-5d)










(Ia)
(1a)
(2a)
(q-4-5a)-
(Za)
(Ga)
(B-ya)
(6a)
(Lb)
(Ad)
(xa)
(ad)





(q-4-5d)










(Ia)
(1a)
(2a)
(q-4-5a)-
(Za)
(Ga)
(B-ya)
(6a)
(Lc)
(Aa)
(xa)
(ad)





(q-4-5d)










(Ia)
(1a)
(2a)
(q-4-5a)-
(Za)
(Ga)
(B-ya)
(6a)
(Lc)
(Ab)
(xa)
(ad)





(q-4-5d)










(Ia)
(1a)
(2a)
(q-4-5a)-
(Za)
(Ga)
(B-ya)
(6a)
(Lc)
(Ad)
(xa)
(ad)





(q-4-5d)










(Ia)
(1a)
(2a)
(q-4-5a)-
(Za)
(Ga)
(B-ya)
(6a)
(Le)
(Aa)
(xa)
(ad)





(q-4-5d)










(Ia)
(1a)
(2a)
(q-4-5a)-
(Za)
(Ga)
(B-ya)
(6a)
(Le)
(Ab)
(xa)
(ad)





(q-4-5d)










(Ia)
(1a)
(2a)
(q-4-5a)-
(Za)
(Ga)
(B-ya)
(6a)
(Le)
(Ad)
(xa)
(ad)





(q-4-5d)










(Ia)
(1a)
(2a)
(q-4-5a)-
(Za)
(Ga)
(B-ya)
(6a)
(Lf)
(Aa)
(xa)
(ad)





(q-4-5d)










(Ia)
(1a)
(2a)
(q-4-5a)-
(Za)
(Ga)
(B-ya)
(6a)
(Lg)
(Aa)
(xa)
(ad)





(q-4-5d)










(Ia)
(1a)
(2a)
(q-4-5a)-
(Za)
(Ga)
(B-ya)
(6a)
(Lg)
(Ad)
(xa)
(ad)





(q-4-5d)










(Ia)
(1a)
(2a)
(q-4-5a)-
(Za)
(Ga)
(B-ya)
(6a)
(Li)
(Aa)
(xa)
(ad)





(q-4-5d)










(Ib)
(1a)
(3a)
(q-4-5a)-
(Za)
(Ga)
(B-ya)
(6a)
(La)
(Aa)
(xa)
(ad)





(q-4-5d)










(Ib)
(1a)
(3a)
(q-4-5a)-
(Za)
(Ga)
(B-ya)
(6a)
(La)
(Ab)
(xa)
(ad)





(q-4-5d)










(Ib)
(1a)
(3a)
(q-4-5a)-
(Za)
(Ga)
(B-ya)
(6a)
(Lb)
(Aa)
(xa)
(ad)





(q-4-5d)










(Ib)
(1a)
(3a)
(q-4-5a)-
(Za)
(Ga)
(B-ya)
(6a)
(Lb)
(Ab)
(xa)
(ad)





(q-4-5d)










(Ib)
(1a)
(3a)
(q-4-5a)-
(Za)
(Ga)
(B-ya)
(6a)
(Lb)
(Ad)
(xa)
(ad)





(q-4-5d)










(Ia)-(Ib)
(1c)
(2c)/(3a)
(q-4-5a)
(Za)
(Ga)-(Gc)
(B-ya)
(6a)
(La)-(Li)
(Aa)-(Ae)
(xa)
(aa)

















(Ia)
(1g)
(2f)/(3a)
(q-4-5-a)
(Za)
(Ga)-(Gc)
(B-ya)
(6f)
(La)-(Li)
(A-xo)
(ad)





*Both R4 are bound at the 3-position of the piperidine.






Particular embodiments according to this aspect of the invention include compounds of Formula (I) as defined above, in which

    • R1 is selected from the group consisting of H, —(C1-C4)alkyl, —(C1-C4)fluoroalkyl, —(C3-C5)cycloalkyl, —OH, —O—(C1-C4)alkyl, —SH, —S—(C1-C4)alkyl, —NH2, —NH—(C1-C4)alkyl, —N((C1-C4)alkyl)2 and phenyl;
    • the




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    •  moiety has the structure
      • (a)







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    •  in which R2 is selected from the group consisting of —H, —(C1-C4)alkyl, —(C1-C4)fluoroalkyl, —OH, —O—(C1-C6)alkyl, —NH2, —NH—(C1-C4)alkyl and —N((C1-C4)alkyl)2, and when L is —C(O)—NH—CH2—,
      • R2 is optionally the same







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    •  as defined below or
      • (b)







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    •  in which R3 is —H, —(C1-C4)alkyl and —(C1-C4)fluoroalkyl; each R4 is independently H or F;

    • R5 is —H, —F or —CH3;

    • the bond denoted by “q” is a single bond or a double bond;

    • —Z-G- is —C(O)—CH2—, —C(O)—CHD-, —C(O)—CD2-, —C(O)—NH—, —C(O)—N(CH3)—, —C(O)—C(CH3)2—, —C(O)—CH(CH3)—, —C(O)—, —C(O)-cyclopentan-1,1-diyl-, —C(O)-cyclopropan-1,1-diyl-, —CH2—CH2—, —CH2—CH(CH3)—, —S(O)2—, —S(O)2—CH2 or —C(S)—CH2—;

    • the ring system denoted by “B” is phenyl, pyridyl or naphthyl;

    • y is 0, 1 or 2;

    • each R6 is
      • independently -halogen, —(C1-C4)fluoroalkyl, —O—(C1-C4)fluoroalkyl, —(C1-C4)alkyl, —O—(C1-C4)alkyl, or NO2;

    • L is selected from the group consisting of —C(O)—NH—CH2—, —C(O)—NH—CH2CH2—O—, —C(O)—NH—CH(CO2CH3)—, —C(O)—NH—CH(CH3)—, —C(O)—NH—CH(CH2OH)—,







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    •  —C(OH)(CH3)—CH2—NH—, —C(OH)(CH3)—CH2—O—, —C(OH)(CH3)—CH2—CH2—, —C(R11)(CH3)—CH2—O—CH2—, —C(R12)(R13)—CH2—NH—CH2—, —C(R12)(R13)—CH2—NH—, —C(O)—NH—NH—, —C(O)—NH—O—, —CH2—CH2—CH2—, —C(O)—CH2—O—, —CH═CH—CH2—, —C(S)—NH—CH2, and —CH2—CH═CH—, in which
      • R10 is —H, —CH3, —CH2OH, —CH2F or CF3,
      • R11 is —H, —CH3, —CH2OH, —CH2OCH3 or —CH2—O—CH2—CH(OH)—CH2OH,
      • R12 is —H or —CH3, and
      • R13 is —H, —CH3, —CF3, CH2OH or CO2CH3;

    • the ring system denoted by “A” is phenyl, pyridyl, pyrimidyl, thiazolyl, pyrazolyl or pyrazinyl;

    • x is 0, 1, 2 or 3; and

    • each Ra is -halogen, —(C1-C4)alkyl, —(C1-C4)fluoroalkyl, —O—(C1-C4)alkyl, —O—(C1-C4)fluoroalkyl, —CN, —NO2 or —C(O)N(R17)2 in which each R17 is independently H, methyl, ethyl, isopropyl or n-propyl;


      in which

    • each alkyl is optionally substituted with one or more substituents selected from the group consisting of -D, -halogen, —CN, —NO2, —O—R20, —N(R21)2 and —S(R20), in which each R20 is independently selected from the group consisting of —H, —CH3, —CH2CH3 and —CF3, and each R21 is independently selected from the group consisting of —H, —CH3 and —CH2CH3.





The compounds according to such embodiments can be further defined as described above, as appropriate.


Other embodiments of the invention as described herein include compounds of formula (II)




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in which

    • R1 is selected from the group consisting of —H, —(C1-C4)alkyl, —(C1-C4)fluoroalkyl, —(C3-C5)cycloalkyl, —OH, —O—(C1-C4)alkyl, —SH, —S—(C1-C4)alkyl, —NH2, —NH—(C1-C4)alkyl and —N((C1-C4)alkyl)2;
    • the




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    •  moiety has the structure
      • (a)







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    •  in which R2 is selected from the group consisting of —H, —(C1-C4)alkyl, —(C1-C4)fluoroalkyl, —OH, —O—(C1-C6)alkyl, —NH2, —NH—(C1-C4)alkyl and —N((C1-C4)alkyl)2, or
      • (b)







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    •  in which R3 is —H;

    • each R4 is independently H or F;

    • R5 is —H or —F;

    • the bond denoted by “q” is a single bond or a double bond;

    • G is —CH2—, —CHD-, —CD2- or —NH—; and

    • each R6 is independently —H, -halogen, —(C1-C4 fluoroalkyl) or —O—(C1-C4 fluoroalkyl), provided that at least one R6 is not —H.

    • L is selected from the group consisting of —C(O)—NH—CH2—,







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    •  —C(OH)(CH3)—CH2—NH—, —C(OH)(CH3)—CH2—O—, —C(R11)(CH3)—CH2—O—CH2—, —C(R12)(R13)—CH2—NH—CH2—, —C(R12)(R13)—CH2—NH—, and —C(O)—NH—NH—, in which
      • R10 is —H, —CH3, —CH2OH or —CH2F,
      • R11 is —H, —CH3, —CH2OH, —CH2OCH3 or —CH2—O—CH2—CH(OH)—CH2OH,
      • R12 is —H or —CH3, and
      • R13 is —H, —CH3 or —CF3;

    • the ring system denoted by “A” is phenyl, pyridyl or pyrimidyl;

    • x is 1, 2 or 3; and

    • each Ra is independently -halogen, —(C1-C4)alkyl, —(C1-C4) fluoroalkyl, —O—(C1-C4)alkyl, —O—(C1-C4)fluoroalkyl, —CN or —NO2,


      in which

    • each alkyl is optionally substituted with one or more substituents selected from the group consisting of -D, -halogen, —CN, —NO2, —O—R20, —N(R21)2 and —S(R20), in which each R20 is independently selected from the group consisting of —H, —CH3, —CH2CH3 and —CF3, and each R21 is independently selected from the group consisting of —H, —CH3 and —CH2CH3.





The compounds according to such embodiments can be further defined as described above, as appropriate.


As noted above, each alkyl moiety (i.e., defined as “alkyl”) is optionally substituted with one or more substituents (e.g., in various embodiments, from 1-5, from 1-3, from 1-2 or one) selected from the group consisting of -D, -halogen, —CN, —NO2, —O—R20, —N(R21)2 and —S(R20), in which each R20 is independently selected from the group consisting of —H, —CH3, —CH2CH3 and —CF3, and each R21 is independently selected from the group consisting of —H, —CH3 and —CH2CH3. In certain embodiments of the invention as described herein, each alkyl is optionally substituted with one or more substituents selected from the group consisting of -D, -halogen, —O—R20 and —N(R21)2 and —S(R20), in which each R20 is independently selected from the group consisting of —H, and —CH3, and each R21 is independently selected from the group consisting of —H and —CH3. In other embodiments, each alkyl is optionally substituted with one or more substituents selected from the group consisting of -D, -halogen, —OH, —NH2 and —SH. In other embodiments, each alkyl is unsubstituted.


As used herein, the “alkyl” groups are defined as having a given number of carbons. Accordingly, “(C1-C4)alkyl” is an alkyl group having from one to four carbons. An alkyl group can be branched or unbranched. Thus, “(C1-C4)alkyl” encompasses methyl, ethyl, n-propyl, isopropyl, n-butyl, sec-butyl and t-butyl, in unsubstituted and substituted forms as described above. In certain embodiments, each —(C1-C6)alkyl is a (C1-C4)alkyl. In certain embodiments, each —(C1-C6)alkyl and —(C1-C4)alkyl is a —(C1-C2)alkyl.


The term “fluoroalkyl” as used herein, means an alkyl group substituted with one or more fluorines and no other substituents. In certain embodiments, one or more carbons of the fluoroalkyl group is persubstituted with fluorine. Examples of fluoroalkyl moieties include, without limitation, fluoromethyl, difluromethyl, trifluoromethyl, pentafluoroethyl, 2,2,2-trifluoroethyl, and 1,1,1,3,3,3-hexafluoroisopropyl. “Fluoroalkyl” is encompassed within optionally-substituted alkyl as described above. In certain embodiments, each —(C1-C6)fluoroalkyl is a (C1-C4)fluoroalkyl. In certain embodiments, each —(C1-C6)fluoroalkyl and —(C1-C4)fluoroalkyl is a —(C1-C2)fluoroalkyl.


The term “heterocycloalkyl” as used herein means a cyclic unsaturated or partially unsaturated group that includes one or more (e.g., 1, 2 or 3, for example, 1 or 2) heteroatoms selected from N, O and S in the ring. The heterocycloalkyl can be, for example, a (C3-C6)heterocycloalkyl (i.e., having 3-6 members in the ring, inclusive of heteroatoms). In certain embodiments, each heterocycloalkyl is selected from the group consisting of piperidine, piperazine and morpholine. In other embodiments, each heterocycloalkyl is selected from the group consisting of piperidine, piperazine, morpholine, 1H-tetrahydropyran, pyrrolidine and tetrahydrofuran. In other embodiments, each heterocycloalkyl is selected from the group consisting of piperidine, piperazine, morpholine, 1H-tetrahydropyran, pyrrolidine, tetrahydrofuran, azetidine, aziridine and oxetane.


In general, any hydrogen atom of the compounds described herein (whether described explicitly as “—H” or as part of another moiety such as an alkyl or a phenyl) can be provided as a protium, or a deuterium. Thus, while deuterium is often described herein as a “substituent,” the person of skill in the art will understand that deuterium can be used as the hydrogen atom species at any position in the compound. However, in certain embodiments of the compounds described herein, every hydrogen atom, unless otherwise explicitly specified, is a protium.


The term “deuteroalkyl” as used herein means an alkyl group substituted with one or more deuteria and no other substituents. Examples of “deuteroalkyl” include deuteromethyl and dideuteromethyl.


Individual compounds of certain embodiments of the present invention are provided in Tables 1-15 below.









TABLE 1









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Cpd.
Q1
Q2
R1
R2
Chemical Name





A1


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Me
H
2-[(2-4-(1-(2-(2,6- difluorophenyl)acetyl)piperidin-4- yl)-N-(3,5-dimethylbenzyl)-2- methylpyrimidine-5- carboxamide





A2


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Me
H
N-(3,4-dichlorobenzyl)-4-(1-(2-(2,6- difluorophenyl)acetyl)piperidin-4-yl)-2- methylpyrimidine-5-carboxamide





A3


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Me
H
4-(1-(2-(2-chloro-6- fluorophenyl)acetyl)piperidin-4-yl)- N-(3,5-dimethylbenzyl)-2- methylpyrimidine-5- carboxamide





A4


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Me
H
N-(3,5-dimethylbenzyl)-4-(1- (2-(2-fluoro-6- (trifluoromethyl)phenyl)acetyl) piperidin-4-yl)-2-methylpyrimidine- 5-carboxamide





A5


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Me
H
N-(3,5-dimethylbenzyl)-2-methyl- 4-(1-(2-(2- (trifluoromethyl)phenyl)acetyl) piperidin-4- yl)pyrimidine-5-carboxamide





A6


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H
H
4-(1-(2-(2-chloro-6- fluorophenyl)acetyl)piperidin-4- yl)-N-(3,4- dichlorobenzyl)pyrimidine-5- carboxamide





A7


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Me
H
4-(1-(2-(2-chlorophenyl)acetyl) piperidin-4- yl)-N-(3,5-dimethylbenzyl)-2- methylpyrimidine-5-carboxamide





A8


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Me
H
4-(1-(2-chloro-6-fluorobenzoyl) piperidin-4- yl)-N-(3,5-dimethylbenzyl)-2- methylpyrimidine-5-carboxamide





A9


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Me
H
N-(3,5-dimethylbenzyl)-2-methyl-4-(1- (2-(2-(trifluoromethoxy)phenyl)acetyl) piperidin-4- yl)pyrimidine-5-carboxamide





A10


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Me
H
N-(3,5-dimethylbenzyl)-4-(1-(2-(2- methoxyphenyl)acetyl)piperidin-4-yl)-2- methylpyrimidine-5-carboxamide





A11


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Me
H
N-(3,5-dimethylbenzyl)-2-methyl-4-(1- (2-(o- tolyl)acetyl)piperidin-4-yl)pyrimidine-5- carboxamide





A12


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Me
H
N-(3,5-dimethylbenzyl)-4-(1-(2-(2- fluorophenyl)acetyl)piperidin-4-yl)-2- methylpyrimidine-5-carboxamide





A13


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Me
H
N-(3,4-dichlorobenzyl)-2- methyl-4-(1-(2-(2,3,6- trifluorophenyl)acetyl)piperidin-4- yl)pyrimidine-5-carboxamide





A14


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Me
H
4-(1-(2-(2,5-difluorophenyl)acetyl) piperidin-4-yl)-N-(3,5- dimethylbenzyl)-2- methylpyrimidine-5-carboxamide





A15


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Me
H
N-(3,5-dimethylbenzyl)-2-methyl-4- (1-(2-(2- nitrophenyl)acetyl)piperidin-4- yl)pyrimidine-5-carboxamide





A16


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Me
H
(R)-N-(3,5-dimethylbenzyl)- 2-methyl-4-(1- (2-phenylpropanoyl)piperidin-4- yl)pyrimidine-5-carboxamide





A17


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Me
H
4-(1-(2-(2,4-difluorophenyl)acetyl) piperidin- 4-yl)-N-(3,5-dimethylbenzyl)-2- methylpyrimidine-5-carboxamide





A18


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Me
H
4-(1-(2-(2,3-difluorophenyl)acetyl) piperidin- 4-yl)-N-(3,5-dimethylbenzyl)-2- methylpyrimidine-5-carboxamide





A19


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Me
H
N-(3,5-dimethylbenzyl)- 2-methyl-4-(1-(2- (naphthalen-1-yl)acetyl)piperidin-4- yl)pyrimidine-5-carboxamide





A20


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Me
H
4-(1-(2-(2,6-difluorophenyl)acetyl) piperidin- 4-yl)-2-methyl-N-(2- phenoxyethyl)pyrimidine-5- carboxamide





A21


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CF3
H
N-(3,4-dichlorobenzyl)-4-(1- (2-(2,6- difluorophenyl)acetyl)piperidin- 4-yl)-2- (trifluoromethyl)pyrimidine-5- carboxamide





A22


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Me
H
N-(3,5-dimethylbenzyl)-4-(1-(2-(3- fluorophenyl)acetyl)piperidin-4-yl)-2- methylpyrimidine-5-carboxamide





A23


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Me
H
N-(3,5-dimethylbenzyl)-4-(1-(2- fluorobenzoyl)piperidin-4-yl)-2- methylpyrimidine-5-carboxamide





A24


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Me
H
4-(1-(2-chlorobenzoyl)piperidin- 4-yl)-N- (3,5-dimethylbenzyl)-2- methylpyrimidine- 5-carboxamide





A25


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Me
H
N-(3,5-dimethylbenzyl)-2-methyl- 4-(1-(2- phenylacetyl)piperidin-4-yl) pyrimidine-5-carboxamide





A26


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Me
H
(S)-N-(3,5-dimethylbenzyl)-2-methyl-4- (1-(2-phenylpropanoyl)piperidin-4- yl)pyrimidine-5-carboxamide





A27


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Me
H
4-(1-(2-(3,5-difluorophenyl)acetyl) piperidin- 4-yl)-N-(3,5-dimethylbenzyl)-2- methylpyrimidine-5-carboxamide





A28


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—iPr
H
N-(3,4-dichlorobenzyl)-4-(1-(2-(2,6- difluorophenyl)acetyl)piperidin-4-yl)-2- isopropylpyrimidine-5-carboxamide





A29


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Me
H
N-(3,5-dimethylbenzyl)-4-(1-(2-(4- fluorophenyl)acetyl)piperidin-4-yl)-2- methylpyrimidine-5-carboxamide





A30


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Me
H
N-(3,5-dimethylbenzyl)-2-methyl-4- (1-(2- (m-tolyl)acetyl)piperidin-4-yl) pyrimidine-5-carboxamide





A31


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Me
H
N-(3,5-dimethylbenzyl)-4-(1-(1-2- fluorophenyl)cyclopentanecarbonyl) piperidin- 4-yl)-2-methylpyrimidine-5- carboxamide





A32


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Me
H
N-(3,5-dimethylbenzyl)-2-methyl- 4-(1-(1-phenylcyclopropanecarbonyl) piperidin-4- yl)pyrimidine-5-carboxamide





A33


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Me
H
4-(1-(3-chloropicolinoyl)piperidin-4-yl)- N-(3,5-dimethylbenzyl)-2- methylpyrimidine-5-carboxamide





A34


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Me
H
4-(1-(2-(3,4-difluorophenyl)acetyl) piperidin- 4-yl)-N-(3,5-dimethylbenzyl)-2- methylpyrimidine-5-carboxamide





A35


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Me
H
N-(3,5-dimethylbenzyl)-2-methyl- 4-(1-(2- methyl-2-phenylpropanoyl) piperidin-4- yl)pyrimidine-5-carboxamide





A36


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—iPr
H
N-(3,4-dichlorobenzyl)-4-(1-(2-(2- fluorophenyl)acetyl)piperidin-4-yl)-2- isopropylpyrimidine-5-carboxamide





A37


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Ph
H
N-(3,4-dichlorobenzyl)-4-(1-(2-(2,6- difluorophenyl)acetyl)piperidin-4-yl)-2- phenylpyrimidine-5-carboxamide





A38


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Me
H
N-(3,5-dimethylbenzyl)-2-methyl-4- (1-(2-(pyridin-2-yl)acetyl)piperidin-4- yl)pyrimidine-5-carboxamide





A39


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Me
H
N-(3,5-dimethylbenzyl)-4-(1-(2-(3- methoxyphenyl)acetyl)piperidin-4-yl)-2- methylpyrimidine-5-carboxamide





A40


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Me
H
N-(3-chlorobenzyl)-4-(1-(2-(2,6- difluorophenyl)acetyl)piperidin-4-yl)-2- methylpyrimidine-5-carboxamide





A41


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Me
H
N-(3-chloro-5-fluorobenzyl)- 4-(1-(2-(2,6- difluorophenyl)acetyl)piperidin-4-yl)-2- methylpyrimidine-5-carboxamide





A42


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Me
H
N-(5-chloro-2-fluorobenzyl)- 4-(1-(2-(2,6- difluorophenyl)acetyl)piperidin-4-yl)-2- methylpyrimidine-5-carboxamide





A43


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-cyclopropyl
H
2-cyclopropyl-4-(1-(2-(2,6- difluorophenyl)acetyl)piperidin-4-yl)-N- (3,5-dimethylbenzyl)pyrimidine-5- carboxamide





A44


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Me
H
4-(1-(2-(2,6-difluorophenyl)acetyl) piperidin-4-yl)-2-methyl-N-((6- (trifluoromethyl)pyridin-2- yl)methyl)pyrimidine-5-carboxamide





A45


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-cyclopropyl
H
N-(3-chlorobenzyl)-2-cyclopropyl-4- (1-(2- (2,6-difluorophenyl)acetyl)piperidin-4- yl)pyrimidine-5-carboxamide





A46


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Me
H
4-(1-(2-(2,6-difluorophenyl)acetyl) piperidin-4-yl)-2-methyl-N-(3- (trifluoromethyl)benzyl)pyrimidine-5- carboxamide





A47


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Me
H
4-(1-(2-(2,6-difluorophenyl)acetyl) piperidin-4-yl)-2-methyl-N-((2- (triflnoromethyl)pyridin-4- yl)methyl)pyrimidine-5-carboxamide





A48


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Et
H
N-(3-chlorobenzyl)-4-(1-(2-(2,6- difluorophenyl)acetyl)piperidin-4-yl)-2- ethylpyrimidine-5-carboxamide





A49


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Me
H
N-((2,6-dichloropyridin-4-yl)methyl)- 4-(1-(2-(2,6- difluorophenyl)acetyl)piperidin-4- yl)-2-methylpyrimidine-5-carboxamide





A50


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Me
H
N-(3-cyanobenzyl)-4-(1-(2-(2,6- difluorophenyl)acetyl)piperidin-4-yl)-2- methylpyrimidine-5-carboxamide





A51


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Me
H
N-(3,5-dichlorobenzyl)-4-(1-(2-(2,6- difluorophonyl)acetyl)piperidin-4-yl)-2- methylpyrimidine-5-carboxamide





A52


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Me
H
N-((2-chloro-6-methoxypyridin-4- yl)methyl)-4-(1-(2-(2,6- difluorophenyl)acetyl)piperidin-4-yl)-2- methylpyrimidine-5-carboxamide





A53


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Me
H
4-(1-(2-(2,6-difluorophenyl)acetyl) piperidin-4-yl)-2-methyl-N-(3- (trifluoromethoxy)benzyl)pyrimidine-5- carboxamide





A54


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Me
H
N-(3-chloro-2-fluorobenzyl)- 4-(1-(2-(2,6- ditluorophenyl)acetyl)piperidin-4-yl)-2- methylpyrimidine-5-carboxamide





A55


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Me
H
N-((2-cyanopyridin-4-yl)methyl)- 4-(1-(2-(2,6-difluorophenyl)acetyl) piperidin-4-yl)-2-methylpyrimidine- 5-carboxamide





A56


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Me
H
N-((2-chloropyridin-4-yl)methyl)- 4-(1-(2-(2,6-difluorophenyl)acetyl) piperidin-4-yl)- 2-methylpyrimidine-5-carboxamide





A57


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H
H
4-(1-(2-(2,6-difluorophenyl)acetyl) piperidin-4-yl)-N-(3,5- dimethylbenzyl)pyrimidine-5- carboxamide





A58


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Me
H
4-(1-(2-(2,6-difluorophenyl)acetyl) piperidin- 4-yl)-N-(3-methoxybenzyl)-2- methylpyrimidine-5-carboxamide





A59


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Me
H
N-(4-chloro-2-methylbenzyl)-4- (1-(2-(2,6- difluorophenyl)acetyl)piperidin-4-yl)-2- methylpyrimidine-5-carboxamide





A60


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Me
H
4-(1-(2-(2,6-difluorophenyl)acetyl) piperidin-4-yl)-2-methyl-N-(3- methylbenzyl)pyrimidine-5-carboxamide





A61


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Me
Me
4-(1-(2-(2,6-difluorophenyl)acetyl) piperidin-4-yl)-2,6-dimethyl-N-((2- (trifluoromethyl)pyridin-4- yl)methyl)pyrimidine-5-carboxamide





A62


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Me
H
N-(4-chlorobenzyl)-4-(1-(2-(2,6- difluorophenyl)acetyl)piperidin-4-yl)-2- methylpyrimidine-5-carboxamide





A63


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Me
H
N-(3-chloro-2-methylbenzyl)-4- (1-(2-(2,6- difluorophenyl)acetyl)piperidin-4-yl)-2- methylpyrimidine-5-carboxamide





A64


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Et
H
4-(1-(2-(2,6-difluorophenyl)acetyl) piperidin-4-yl)-N-(3,5- dimethylbenzyl)-2- ethylpyrimidine-5-carboxamide





A65


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H
H
N-(3,4-dichlorobenzyl)-4-(1-(2-(2,6- dichlorophenyl)acetyl)piperidin-4- yl)pyrimidine-5-carboxamide





A66


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Me
H
4-(1-(2-(2,6-difluorophenyl)acetyl) piperidin-4-yl)-2-methyl-N-((4- (trifluoromethyl)pyridin-2- yl)methyl)pyrimidine-5-carboxamide





A67


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Me
H
4-(1-(2-(2,6-difluorophenyl)acetyl) piperidin-4-yl)-2-methyl-N-((4- methyl-6-(trifluoromethyl)pyrimidin-2- yl)methyl)pyrimidine-5-carboxamide





A68


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H
H
N-(3,4-dichlorobenzyl)-4-(1-(2-(2,3,6- trifluorophenyl)acetyl)piperidin-4- yl)pyrimidine-5-carboxamide





A69


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Me
H
N-benzyl-4-(1-(2-(2,6- difluorophenyl)acetyl)piperidin-4-yl)-2- methylpyrimidine-5-carboxamide





A70


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Me
H
4-(1-(2-(2,6-difluorophenyl)acetyl) piperidin- 4-yl)-2-methyl-N-((2-methylpyridin-4- yl)methyl)pyrimidine-5-carboxamide





A71


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Me
H
N-((6-chloropyridin-3-yl)methyl)- 4-(1-(2-(2,6-difluorophenyl)acetyl) piperidin-4-yl)-2- methylpyrimidine-5-carboxamide





A72


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Me
H
N-((2-chlorothiazol-5-yl)methyl)- 4-(1-(2-(2,6-difluorophenyl)acetyl) piperidin-4-yl)-2-methylpyrimidine- 5-carboxamide





A73


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Me
H
4-(1-(2-(2,6-difluorophenyl)acetyl) piperidin-4-yl)-N-((2,6-dimethylpyridin- 4-yl)methyl)- 2-methylpyrimidine-5-carboxamide





A74


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Me
H
4-(1-(2-(2,6-difluorophenyl)acetyl) piperidin-4-yl)-2-methyl-N-((6- (trifluoromethyl)pyridin-3- yl)methyl)pyrimidine-5-carboxamide





A75


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Me
H
methyl 2-(3-chlorophenyl)-2- (4-(1-(2-(2,6-difluorophenyl)acetyl) piperidin-4-yl)-2-methylpyrimidine- 5-carboxamido)acetate





A76


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Me
H
N-(1-(3-chlorophenyl)ethyl)-4- (1-(2-(2,6-difluorophenyl) acetyl)piperidin-4-yl)-2- methylpyrimidine-5-carboxamide





A77


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Me
H
4-(1-(2-(2,6-difluorophenyl)acetyl) piperidin-4-yl)-N-((2- (ethylcarbamoyl)pyridin-4- yl)methyl)-2-methylpyrimidine-5- carboxamide





A78


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Me
H
4-(1-(2-(2,6-difluorophenyl)acetyl) piperidin-4-yl)-N-((1,5-dimethyl- 1H-pyrazol-3-yl)methyl)-2- methylpyrimidine-5- carboxamide





A79


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Me
H
4-(1-(2-(2,6-difluorophenyl)acetyl) piperidin-4-yl)-2-methyl-N-((5- methylpyrazin-2-yl)methyl) pyrimidine-5-carboxamide





A80


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Me
Me
4-(1-(2-(2,6-difluorophenyl)acetyl) piperidin-4-yl)-N-(3,5- dimethylbenzyl)-2,6- dimethylpyrimidine-5-carboxamide





A81


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Me
Me
N-(3-chlorophenyl)-4-(1-(2-(2,6- difluorophenyl)acetyl)piperidin-4-yl)- 2,6-dimethylpyrimidine-5-carboxamide





A82


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Me
Me
4-(1-(2-(2,6-difluorophenyl)acetyl) piperidin- 4-yl)-2,6-dimethyl-N-((6- (trifluoromethyl)pyridin-2- yl)methyl)pyrimidine-5-carboxamide





A83


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Me
Me
N-((2-cyanopyridin-4-yl)methyl)- 4-(1-(2-(2,6- difluorophenyl)acetyl)piperidin-4- yl)-2,6-dimethylpyrimidine-5- carboxamide





A84


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Me
—iPr
4-(1-(2-(2,6-difluorophenyl)acetyl) piperidin- 4-yl)-N-(3,5-dimethylbenzyl)-6- isopropyl-2- methylpyrimidine-5-carboxamide





A85


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SMe
H
N-(3,4-dichlorobenzyl)-4-(1-(2-(2,6- difluorophenyl)acetyl)piperidin-4-yl)-2- (methylthio)pyrimidine-5-carboxamide





A86


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OMe
H
N-(3,4-dichlorobenzyl)-4-(1-(2-(2,6- difluorophenyl)acetyl)piperidin-4-yl)-2- methoxypyrimidine-5-carboxamide





A87


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H
N-(3-chlorobenzyl)-4-(1-(2-(2,6- difluorophenyl)acetyl)piperidin-4- yl)-2-((2- hydroxyethyl)amino)pyrimidine-5- carboxamide





A88


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—N(Me)2
H
N-(3-chlorobenzl)-4-(1-(2-(2,6- difluorophenyl)acetyl)piperidin- 4-yl)-2-(dimethylamino)pyrimidine- 5-carboxamide





A89


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NH2
H
2-amino-N-(3-chlorobenzyl)-4- (1-(2-(2,6- difluorophenyl)acetyl)piperidin-4- yl)pyrimidine-5-carboxamide





A90


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NHMe
H
N-(3-chlorobenzyl)-4-(1-(2-(2,6- difluorophenyl)acetyl)piperidin-4-yl)-2- (methylamino)pyrimidine-5-carboxamide





A91


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NHEt
H
N-(3-chlorobenzyl)-4-(1-(2-(2,6- difluorophenyl)acetyl)piperidin-4-yl)-2- (ethylamino)pyrimidine-5-carboxamide





A92


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OMe
H
N-(3-chlorobenzyl)-4-(1-(2-(2,6- difluorophenyl)acetyl)piperidin-4-yl)-2- methoxypyrimidine-5-carboxamide





A93


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OEt
H
N-(3-chlorobenzyl)-4-(1-(2-(2,6- difluorophenyl)acetyl)piperidin-4-yl)-2- ethoxypyrimidine-5-carboxamide





A94


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—NHiPr
H
N-(3-chlorobenzyl)-4-(1-(2-(2,6- difluorophenyl)acetyl)piperidin-4-yl)-2- (isopropylamino)pyrimidine-5- carboxamide





A95


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OiPr
H
N-(3-chlorobenzyl)-4-(1-(2-(2,6- difluorophenyl)acetyl)piperidin-4-yl)-2- isopropoxypyrimidine-5-carboxamide





A96


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NH(CH2)2—NH2
H
2-((2-aminoethyl)amino)-N-(3- chlorobenzyl)-4-(1-(2-(2,6- difluorophenyl)acetyl)piperidin-4- yl)pyrimidine-5-carboxamide





A97


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NH(CH2)2—N(Me)2
H
N-(3-chlorobenzyl)-4-(1-(2-(2,6- difluorophenyl)acetyl)piperidin-4-yl)- 2-((2-(dimethylamino)ethyl)amino) pyrimidine-5-carboxamide





A98


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OH
H
N-(3-chlorobenzyl)-4-(1-(2-(2,6- difluorophenyl)acetyl)piperidin-4-yl)-2- hydroxypyrimidine-5-carboxamide





A106


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Me
H
N-(3,5-dimethylbenzyl)-4-(1-((2- fluorophenyl)carbamoyl)piperidin- 4-yl)-2- methylpyrimidine-5-carboxamide





A108


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Me
NHMe
4-(1-(2-(2,6-difluorophenyl)acetyl) piperidin-4-yl)-N-(3,5- dimethylbenzyl)-2-methyl-6- (methylamino)pyrimidine-5- carboxamide





A109


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Me
NHMe
N-(3-chlorobenzyl)-4-(1-(2-(2,6- difluorophenyl)acetyl)piperidin-4-yl)-2- methyl-6-(methylamino)pyrimidine-5- carboxamide





A110


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Me
H
N-(1-(3-chlorophenyl)-2- hydroxyethyl)-4-(1-(2-(2,6- difluorophenyl)acetyl)piperidin-4-yl)- 2-methylpyrimidine-5-carboxamide





A111


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Me
OMe
N-(3-chlorobenzyl)-4-(1-(2-(2,6- difluorophenyl)acetyl)piperidin-4-yl)-6- methoxy-2-methylpyrimidine-5- carboxamide





A112


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Me
CF3
4-(1-(2-(2,6-difluorophenyl)acetyl) piperidin-4-yl)-N-(3,5-dimethylbenzyl)- 2-methyl-6-(trifluoromethyl)pyrimidine- 5-carboxamide





A116


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Me
H
4-{1-[(2,6- Difluorophenyl)(difluoro)acetyl] piperidin-4-yl}-N-[(3,5- dimethylphenyl)methyl]-2- methylpyrimidine-5-carboxamide





A117


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Me
H
4-{1-[Difluoro(phenyl)acetyl]piperidin- 4-yl}-N-[(3,5-dimethylphenyl)methyl]- 2-methylpyrimidine-5-carboxamide





A118


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Me
H
4-{1-[Difluoro(2- fluorophenyl)acetyl]piperidin-4-yl}-N- [(3,5-dimethylphenyl)methyl]-2- methylpyrimidine-5-carboxamide





A119


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Me
H
2-Chlorophenyl 4-[5-({[(3,5- dimethylphenyl)methyl]amino} carbonyl)-2- methylpyrimidin-4-yl] piperidine-1-carboxylate





A120


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Me
H
2,6-Difluorophenyl 4-[5-({[(3,5- dimethylphenyl)methyl]amino} carbonyl)-2-methylpyrimidin-4- yl]piperidine-1-carboxylate





A121


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Me
Me
4-{1-[(2,6-Difluorophenyl)acetyl] piperidin-4-yl}-2,6-dimethyl-N-{[2- (trifluoromethyl)pyrimidin-4- yl]methyl}pyrimidine-5-carboxamide





A122


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Me
Me
4-(1-{[(2,6- difluorophenyl)amino]carbonyl} piperidin-4-yl)-2,6-dimethyl-N-{[2- (trifluoromethyl)pyrimidin-4- yl]methyl}pyrimidine-5-carboxamide





A123


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Me
Me
2,6-Difluorophenyl 4-{2,6-dimethyl-5- [({[2- (trifluoromethyl)pyrimidin-4- yl]methyl}amino)carbonyl]pyrimidin-4- yl}piperidine-1-carboxylate





A124


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Me
Me
2-Fluorophenyl 4-{2,6-dimethyl-5-[({[2- (trifluoromethyl)pyrimidin-4- yl]methyl}amino)carbonyl]pyrimidin-4- yl}piperidine-1-carboxylate





A125


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Me
Me
Phenyl 4-{2,6-dimethyl-5-[({[2- (triflnoromethyl)pyrimidin-4- yl]methyl}amino)carbonyl]pyrimidin-4- yl}piperidine-1-carboxylate





A126


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NH2
Me
2-Fluorophenyl 4-{2-amino-6-methyl-5- [({[2-(trifluoromethyl)pyrimidin-4- yl]methyl}amino)carbonyl]pyrimidin-4- yl}piperidine-1-carboxylate





I2


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Me


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4-(1-(2-(2,6-difluorophenyl)acetyl) piperidin-4-yl)-2-methyl-N-((2- (trifluoromethyl)pyridin-4-yl)methyl)-6- (((2- (trifluoromethyl)pyridin-4- yl)methyl)amino)pyrimidine-5- carboxamide
















TABLE 2









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Cpd
Q3
Q4
Chemical Name





A99 


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4-(1-(2,6-difluorophenethyl)piperidin-4-yl)-N-(3,5- dimethylbenzyl)-2-methylpyrimidine-5- carboxamide





A100


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4-(1-(2-chlorophenethyl)piperidin-4-yl)-N-(3,5- dimethylbenzyl)-2-methylpyrimidine-5- carboxamide





A101


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N-(3,5-dimethylbenzyl)-2-methyl-4-(1- phenethylpiperidin-4-yl)pyrimidine-5-carboxamide





A102


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N-(3-chlorobenzyl)-4-(1-(2-(2,6- difluorophenyl)acetyl)-4-methylpiperidin-4-yl)-2- methylpyrimidine-5-carboxamide





A103


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N-(3-chlorobenzyl)-4-(1-(2-(2,6- difluorophenyl)acetyl)-4-fluoropiperidin-4-yl)-2- methylpyrimidine-5-carboxamide





A104


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4-(1-(2-(2,6-difluorophenyl)acetyl)-4- fluoropiperidin-4-yl)-2-methyl-N-((6- (trifluoromethyl)pyridin-2-yl)methyl)pyrimidine-5- carboxamide





A105


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4-(1-(2-(2,6-difluorophenyl)acetyl)-4- fluoropiperidin-4-yl)-N-(3,5-dimethylbenzyl)-2- methylpyrimidine-5-carboxamide





A107


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4-(1-((2,6-difluorophenyl)carbamoyl)piperidin-4- yl)-N-(3,5-dimethylbenzyl)-2-methylpyrimidine-5- carboxamide





A113


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4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-yl)- N-(3,5-dimethylbenzyl)-N,2-dimethylpyrimidine-5- carboxamide





A114


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4-(1-(2-(2,6-difluorophenyl)acetyl)-1,2,3,4- tetrahydropyridin-4-yl)-N-(3,5-dimethylbenzyl)-2- methylpyrimidine-5-carboxamide





A115


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4-(1-(2-(2-chlorophenyl)-2-oxoethyl)piperidin-4- yl)-N-(3,5-dimethylbenzyl)-2-methylpyrimidine-5- carboxamide





K1


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N-((4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4- yl)-2-methylpyrimidin-5-yl)methyl)-3,5- dimethylbenzamide
















TABLE 3









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each








Cpd.
R1
R2
R4
R4a
R6
R10
G
Q5
Chemical Name





B1 
Me
Me
H
H
F
Me
CH2


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(E)-2-(2,6-difluorophenyl)-1-(4-(2,6- dimethyl-5-(1-((3- (trifluoromethyl)phenoxy)imino)ethyl) pyrimidin-4-yl)piperidin-1-yl)ethanone





B3 
Me
H
H
H
F
Me
CH2


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(E)-2-(2,6-difluorophenyl)-1-(4-(2- methyl-5-(1-((3- (trifluoromethyl)phenoxy)imino)ethyl) pyrimidin-4-yl)piperidin-1-yl)ethanone





B5 
Me
H
H
H
F
Me
CH2


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(E)-1-(4-(5-(1-((3- chlorophenoxy)imino)ethyl)-2- methylpyrimidin-4-yl)piperidin-1-yl)- 2-(2,6-difluorophenyl)ethanone





B7 
Me
H
H
H
F
Me
CH2


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(E)-2-(2,6-difluorophenyl)-1-(4-(2- methyl-5-(1-((3- (trifluoromethoxy)phenoxy)imino) ethyl)pyrimidin-4-yl)piperidin-1- yl)ethanone





B9 
Me
H
H
H
F
Me
CH2


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(E)-2-(2,6-difluorophenyl)-1-(4-(5-(1- ((3,5-dimethylphenoxy)imino)ethyl)-2- methylpyrimidin-4-yl)piperidin-1- yl)ethanone





B11
Me
Me
H
H
F
Me
CH2


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(E)-2-(2,6-difluorophenyl)-1-(4-(2- methyl-5-(1-((m- tolyloxy)imino)ethyl)pyrimidin-4- yl)piperidin-1-yl)ethanone





B12
Me
H
H
H
F
Me
CH2


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(E)-1-(4-(5-(1-((3-chloro-5- fluorophenoxy)imino)ethyl)-2- methylpyrimidin-4-yl)piperidin-1-yl)- 2-(2,6-difluorophenyl)ethanone





B13
Me
H
H
H
F
Me
CH2


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(E)-4-(((1-(4-(1-(2-(2,6- difluorophenyl)acetyl)piperidin-4-yl)- 2-methylpyrimidin-5- yl)ethylidene)amino)oxy)picolinonitrile





B14
Me
H
H
H
F
Me
CH2


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(E)-2-(2,6-difluorophenyl)-1-(4-(2- methyl-5-(1-(((2- (trifluoromethyl)pyridin-4- yl)oxy)imino)ethyl)pyrimidin-4- yl)piperidin-1-yl)ethanone





B15
Me
H
H
H
F
Me
CH2


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(E)-1-(4-(5-(1-(((2-chloropyridin-4- yl)oxy)imino)ethyl)-2- methylpyrimidin-4-yl)piperidin-1-yl)- 2-(2,6-difluorophenyl)ethanone





B16
Me
H
H
H
F
Me
CH2


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(E)-2-(2,6-difluorophenyl)-1-(4-(5-(1- ((3-fluorophenoxy)imino)ethyl)-2- methylpyrimidin-4-yl)piperidin-1- yl)ethanone





B17
Me
H
H
H
F
Me
CH2


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(E)-2-(2,6-difluorophenyl)-1-(4-(5-(1- ((5-fluoro-2- methylphenoxy)imino)ethyl)-2- methylpyrimidin-4-yl)piperidin-1- yl)ethanone





B18
Me
H
H
H
F
Me
CH2


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(E)-2-(2,6-difluorophenyl)-1-(4-(5-(1- ((2,5-dimethylphenoxy)imino)ethyl)-2- methylpyrimidin-4-yl)piperidin-1- yl)ethanone





B19
Me
H
H
H
F
Me
CH2


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(E)-2-(2,6-difluorophenyl)-1-(4-(2- methyl-5-(1-(((6- (trifluoromethyl)pyridin-2- yl)oxy)imino)ethyl)pyrimidin-4- yl)piperidin-1-yl)ethanone





B20
Me
H
H
H
F
Me
CH2


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(E)-2-(2,6-difluorophenyl)-1-(4-(2- methyl-5-(1-(((2- (trifluoromethyl)pyrimidin-4- yl)oxy)imino)ethyl)pyrimidin-4- yl)piperidin-1-yl)ethanone





B21
Me
H
H
H
F
Me
CH2


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(E)-2-(2,6-difluorophenyl)-1-(4-(5-(1- ((3-methoxyphenoxy)imino)ethyl)-2- methylpyrimidin-4-yl)piperidin-1- yl)ethanone





B22
Me
H
H
H
F
Me
CH2


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(E)-2-(2,6-difluorophenyl)-1-(4-(5-(1- ((2,3-dimethylphenoxy)imino)ethyl)-2- methylpyrimidin-4-yl)piperidin-1- yl)ethanone





B23
Me
H
H
H
F
—CH2OH
CH2


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(Z)-2-(2,6-difluorophenyl)-1-(4-(5-(2- hydroxy-1-(((2- (trifluoromethyl)pyridin-4- yl)oxy)imino)ethyl)-2- methylpyrimidin-4-yl)piperidin-1- yl)ethanone





B24
Me
H
H
H
F
—CH2F
CH2


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(Z)-2-(2,6-difluorophenyl)-1-(4-(5-(2- fluoro-1-(((2-(trifluoromethyl)pyridin- 4-yl)oxy)imino)ethyl)-2- methylpyrimidin-4-yl)piperidin-1- yl)ethanone





B25
Me
H
H
H
F
—CH2OH
CH2


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(Z)-2-(2,6-difluorophenyl)-1-(4-(5-(2- hydroxy-1-(((2- (trifluoromethyl)pyrimidin-4- yl)oxy)imino)ethyl)-2- methylpyrimidin-4-yl)piperidin-1- yl)ethanone





B27
Me
H
H
H
F
—CH2F
CH2


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(Z)-2-(2,6-difluorophenyl)-1-(4-(5-(2- fluoro-1-(((2- (trifluoromethyl)pyrimidin-4- yl)oxy)imino)ethyl)-2- methylpyrimidin-4-yl)piperidin-1- yl)ethanone





B28
Me
H
H
H
F
—CH2OH
CH2


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(Z)-2-(2,6-difluorophenyl)-1-(4-(5-(2- hydroxy-1-((3- (trifluoromethyl)phenoxy)imino)ethyl)- 2-methylpyrimidin-4-yl)piperidin-1- yl)ethanone





B29
Me
H
H
H
F
CF3
CH2


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(Z)-2-(2,6-difluorophenyl)-1-(4-(2- methyl-5-(2,2,2-trifluoro-1-((3- fluorophenoxy)imino)ethyl)pyrimidin- 4-yl)piperidin-1-yl)ethanone





B30
Me
H
H
H
F
H
CH2


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(E)-4-(1-(2-(2,6- difluorophenyl)acetyl)piperidin-4-yl)- 2-methylpyrimidine-5-carbaldehyde O- (3-(trifluoromethyl)phenyl) oxime





B31
Me
Me
H
H
F
H
CH2


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(E)-4-(1-(2-(2,6- difluorophenyl)acetyl)piperidin-4-yl)- 2,6-dimethylpyrimidine-5- carbaldehyde O-(3- (trifluoromethyl)phenyl) oxime





B32
Me
H
H
H
F
—CHF2
CH2


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(Z)-1-(4-(5-(2,2-difluoro-1-(((2- (trifluoromethyl)pyridin-4- yl)oxy)imino)ethyl)-2- methylpyrimidin-4-yl)piperidin-1-yl)- 2-(2,6-difluorophenyl)ethanone





B33
Me
H
F
H
F
H
CH2


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(E)-4-(1-(2-(2,6- difluorophenyl)acetyl)-3,3- difluoropiperidin-4-yl)-2- methylpyrimidine-5-carbaldehyde O- (3-(trifluoromethyl)phenyl) oxime





B34
Me
H
F
H
F
Me
CH2


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(E)-1-(3,3-difluoro-4-(2-methyl-5-(1- (((2-(trifluoromethyl)pyridin-4- yl)oxy)imino)ethyl)pyrimidin-4- yl)piperidin-1-yl)-2-(2,6- difluorophenyl)ethanone





B35
Me
H
F
H
F
—CH2F
CH2


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(Z)-1-(3,3-difluoro-4-(5-(2-fluoro-1- (((2-(trifluoromethyl)pyrimidin-4- yl)oxy)imino)ethyl)-2- methylpyrimidin-4-yl)piperidin-1-yl)- 2-(2,6-difluorophenyl)ethanone





B36
Me
H
H
H
F
Me
NH


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N-(2,6-Difluorophenyl)-4-{2-methyl-5- [(1E)-N-{[2- (trifluoromethyl)pyrimidin-4- yl]oxy}ethanimidoyl]pyrimidin-4- yl}piperidine-1-carboxamide





B37
Me
H
H
H
F
Me
NH


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N-(2,6-Difluorophenyl)-4-{2-methyl-5- [(1E)-N-{[2-(trifluoromethyl)pyridin- 4-yl]oxy}ethanimidoyl]pyrimidin-4- yl}piperidine-1-carboxamide





B38
Me
H
H
H
F
Me
NH


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N-(2,6-Difluorophenyl)-4-{2-methyl-5- [(1E)-N-{[6-(trifluoromethyl)pyridin- 2-yl]oxy}ethanimidoyl]pyrimidin-4- yl}piperidine-1-carboxamide





B39
Me
H
H
H
CF3
Me
NH


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N-[2-Fluoro-6- (trifluoromethyl)phenyl]-4-{2-methyl- 5-[(1E)-N-{[2- (trifluoromethyl)pyrimidin-4- yl]oxy}ethanimidoyl]pyrimidin-4- yl}piperidine-1-carboxamide





B40
Me
H
H
H
F
Me
NH


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4-{5-[(1E)-N-{[2-chloro-6- (trifluoromethyl)pyridin-4- yl]oxy}ethanimidoyl]-2- methylpyrimidin-4-yl}-N-(2,6- difluorophenyl)piperidine-1- carboxamide





B42
Me
H
H
H
F
Me
NH


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N-(2,6-difluorophenyl)-4-{2-methyl-5- [(1E)-N-{[6-methyl-2- (trifluoromethyl)pyrimidin-4- yl]oxy}ethanimidoyl]pyrimidin-4- yl}piperidine-1-carboxamide





B43
Me
H
H
H
F
Me
NH


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N-(2,6-Difluorophenyl)-4-{2-methyl-5- [(1E)-N-{[3- (trifluoromethyl)phenyl]oxy}ethanimidoyl] pyrimidin-4-yl}piperidine-1- carboxamide





B45
Me
H
H
H
CF3
Me
NH


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N-[2-fluoro-6- (trifluoromethyl)phenyl]-4-{2-methyl- 5-[(1E)-N-{[3- (trifluoromethyl)phenyl]oxy}ethanimidoyl] pyrimidin-4-yl}piperidine-1- carboxamide





B46
Me
Me
H
H
F
H
NH


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N-(2,6-Difluorophenyl)-4-{2,6- dimethyl-5-[(E)-({[3- (trifluoromethyl)phenyl]oxy}imino) methyl]pyrimidin-4-yl}piperidine-1- carboxamide





B47
Me
H
H
Me
F
Me
NH


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N-(2,6-Difluorophenyl)-2-methyl-4-{2- methyl-5-[(1E)-N-{[3- (trifluoromethyl)phenyl]oxy}ethanimidoyl] pyrimidin-4-yl}piperidine-1- carboxamide





B48
Me
Me
H
H
F
n-Pr
CH2


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(1E)-1-(4-{1-[(2,6- difluorophenyl)acetyl]piperidin-4-yl}- 2,6-dimethylpyrimidin-5-yl)butan-1- one O-[3- (trifluoromethyl)phenyl]oxime





B50
SMe
H
H
H
F
Me
NH


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N-(2,6-Difluorophenyl)-4-{2- (methylthio)-5-[(1E)-N-{[3- (trifluoromethyl)phenyl]oxy}ethanimidoyl] pyrimidin-4-yl}piperidine-1- carboxamide





B51
NH2
H
H
H
F
Me
NH


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4-{2-Amino-5-[(1E)-N-{[3- (trifluoromethyl)phenyl]oxy}ethanimidoyl] pyrimidin-4-yl}-N-(2,6- difluorophenyl)piperidine-1- carboxamide





B52
SMe
H
H
H
F
Me
NH


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N-(2,6-Difluorophenyl)-4-{2- (methylthio)-5-[(1E)-N-{[2- (trifluoromethyl)pyridin-4- yl]oxy}ethanimidoyl]pyrimidin-4- yl}piperidine-1-carboxamide





B53
NH2
H
H
H
F
Me
NH


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4-{2-amino-5-[(1E)-N-{[2- (trifluoromethyl)pyridin-4- yl]oxy}ethanimidoyl]pyrimidin-4-yl}- N-(2,6-difluorophenyl)piperidine-1- carboxamide





B54
NH2
H
H
H
F
Me
NH


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4-{2-Amino-5-[(1E)-N-{[2- (trifluoromethyl)pyrimidin-4- yl]oxy}ethanimidoyl]pyrimidin-4-yl}- N-(2,6-difluorophenyl)piperidine-1- carboxamide





B55
NH2
H
H
H
F
Me
NH


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4-{2-Amino-5-[(1E)-N-{[2-chloro-6- (trifluoromethyl)pyridin-4- yl]oxy}ethanimidoyl]pyrimidin-4-yl}- N-(2,6-difluorophenyl)piperidine-1- carboxamide





B56
NH2
H
H
H
F
Me
NH


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4-(2-Amino-5-{(1E)-N-[(2,6- difluoropyridin-4- yl)oxy]ethanimidoyl}pyrimidin-4-yl)- N-(2,6-difluorophenyl)piperidine-1- carboxamide





B58
SMe
H
H
H
F
Me
NH


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4-[5-{(1E)-N-[(2-Chloropyridin-4- yl)oxy]ethanimidoyl}-2- (methylthio)pyrimidin-4-yl]-N-(2,6- difluorophenyl)piperidine-1- carboxamide





B59
NH2
H
H
H
F
Me
NH


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4-(2-Amino-5-{(1E)-N-[(2- chloropyridin-4- yl)oxy]ethanimidoyl}pyrimidin-4-yl)- N-(2,6-difluorophenyl)piperidine-1- carboxamide





B60
NEt
H
H
H
F
Me
NH


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N-(2,6-Difluorophenyl)-4-{2- (ethylamino)-5-[(1E)-N-{[2- (trifluoromethyl)pyridin-4- yl]oxy}ethanimidoyl]pyrimidin-4- yl}piperidine-1-carboxamide





B61
NMe2
H
H
H
F
Me
NH


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N-(2,6-Difluorophenyl)-4-{2- (dimethylamino)-5-[(1E)-N-{[2- (trifluoromethyl)pyridin-4- yl]oxy}ethanimidoyl]pyrimidin-4- yl}piperidine-1-carboxamide
















TABLE 4









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Cpd
R1
R2
R10
G
Q6
Chemical Name





B2 
Me
Me
Me
CH2


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(Z)-2-(2,6-difluorophenyl)-1-(4-(2,6- dimethyl-5-(1-(((2-(trifluoromethyl)pyridin- 4-yl)oxy)imino)ethyl)pyrimidin-4- yl)piperidin-1-yl)ethanone





B4 
Me
H
Me
CH2


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(Z)-2-(2,6-difluorophenyl)-1-(4-(2-methyl-5- (1-((3- (trifluoromethyl)phenoxy)imino)ethyl) pyrimidin-4-yl)piperidin-1-yl)ethanone





B6 
Me
H
H
CH2


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(Z)-1-(4-(5-(1-((3- chlorophenoxy)imino)ethyl)-2- methylpyrimidin-4-yl)piperidin-1-yl)-2-(2,6- difluorophenyl)ethanone





B8 
Me
H
Me
CH2


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(Z)-2-(2,6-difluorophenyl)-1-(4-(2-methyl-5- (1-((3- (trifluoromethoxy)phenoxy)imino)ethyl) pyrimidin-4-yl)piperidin-1-yl)ethanone





B10
Me
H
Me
CH2


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(Z)-2-(2,6-difluorophenyl)-1-(4-(5-(1-((3,5- dimethylphenoxy)imino)ethyl)-2- methylpyrimidin-4-yl)piperidin-1- yl)ethanone





B26
Me
H
—CH2OH
CH2


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(E)-2-(2,6-difluorophenyl)-1-(4-(5-(2- hydroxy-1-(((2-(trifluoromethyl)pyrimidin- 4-yl)oxy)imino)ethyl)-2-methylpyrimidin-4- yl)piperidin-1-yl)ethanone





B41
Me
H
Me
NH


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4-{5-[(1Z)-N-{[2-chloro-6- (trifluoromethyl)pyridin-4- yl]oxy}ethanimidoyl]-2-methylpyrimidin-4- yl}-N-(2,6-difluorophenyl)piperidine-1- carboxamide





B44
Me
H
Me
NH


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N-(2,6-Difluorophenyl)-4-{2-methyl-5- [(1Z)-N-{[3- (trifluoromethyl)phenyl]oxy}ethanimidoyl] pyrimidin-4-yl}piperidine-1-carboxamide





B49
Me
Me
n-Pr
CH2


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(1Z)-1-(4-{1-[(2,6- difluorophenyl)acetyl]piperidin-4-yl}-2,6- dimethylpyrimidin-5-yl)butan-1-one O-[3- (trifluoromethyl)phenyl]oxime





B57
NH2
H
Me
NH


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4-(2-Amino-5-{(1Z)-N-[(2,6- difluoropyridin-4- yl)oxy]ethanimidoyl}pyrimidin-4-yl)-N- (2,6-difluorophenyl)piperidine-1- carboxamide


















TABLE 5





Cpd
Structure
Chemical Name







C1


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2-(2,6-difluorophenyl)-1-(4-(2,6-dimethyl-5-(3-(3- (trifluoromethyl)phenyl)-1,2,4-oxadiazol-5-yl)pyrimidin-4- yl)piperidin-1-yl)ethanone





C2


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2-(2,6-difluorophenyl)-1-(4-(5-(3-(4-fluorophenyl)-1,2,4- oxadiazol-5-yl)-2,6-dimethylpyrimidin-4-yl)piperidin-1- yl)ethanone





C3


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2-(2,6-difluorophenyl)-1-(4-(5-(3-(4-fluorobenzyl)-1,2,4- oxadiazol-5-yl)-2,6-dimethylpyrimidin-4-yl)piperidin-1- yl)ethanone





C4


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1-(4-(5-(3-(3-chlorophenyl)-1,2,4-oxadiazol-5-yl)-2,6- dimethylpyrimidin-4-yl)piperidin-1-yl)-2-(2,6- difluorophenyl)ethanone





C5


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2-(2,6-difluorophenyl)-1-(4-(2,6-dimethyl-5-(5-(2- (trifluoromethyl)pyrimidin-4-yl)-1,3,4-oxadiazol-2- yl)pyrimidin-4-yl)piperidin-1-yl)ethanone





C6


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2-(2,6-difluorophenyl)-1-(4-(2,6-dimethyl-5-(5-(6- (trifluoromethyl)pyridin-2-yl)-1,3,4-ozadiazol-2-yl)pyrimidin- 4-yl)piperidin-1-yl)ethanone





C7


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2-(2,6-difluorophenyl)-1-(4-(2,6-dimethyl-5-(5-(3- (trifluoromethyl)benzyl)-1,3,4-oxadiazol-2-yl)pyrimidin-4- yl)piperidin-1-yl)ethanone





C8


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2-(2,6-difluorophenyl)-1-(4-(2,6-dimethyl-5-(5-(6-methyl-2- (trifluoromethyl)pyrimidin-4-yl)-1,3,4-oxadiazol-2- yl)pyrimidin-4-yl)piperidin-1-yl)ethanone





C9


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1-(4-(5-(5-(6-(1,1-difluoroethyl)pyridin-2-yl)-1,3,4-oxadiazol- 2-yl)-2,6-dimethylpyrimidin-4-yl)piperidin-1-yl)-2,6- difluorophenyl)ethanone





C10


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(1-(4-(5-(5-(6-chloropyridin-2-yl)-1,3,4-oxadiazol-2-yl)-2,6- dimethylpyrimidin-4-yl)piperidin-1-yl)-2-(2,6- difluorophenyl)ethanone





C11


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2-(2,6-difluorophenyl)-1-(4-(2,6-dimethyl-5-(5-(3- (trifluoromethoxy)phenyl)-1,3,4-oxadiazol-2-yl)pyrimidin-4- yl)piperidin-1-yl)ethanone





C12


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1-(4-(5-(5-(3-chlorophenyl)-1,3,4-oxadiazol-2-yl)-2,6- dimethylpyrimidin-4-yl)piperidin-1-yl)-2-(2,6- difluorophenyl)ethanone





C13


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2-(2,6-difluorophenyl)-1-(4-(2,6-dimethyl-5-(5-(3- (trifluoromethyl)phenyl)-1,3,4-oxadiazol-2-yl)pyrimidin-4- yl)piperidin-1-yl)ethanone





C14


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2-(2,6-difluorophenyl)-1-(4-(5-(5-(3,5-dimethylphenyl)-1,3,4- oxadiazol-2-yl)-2,6-dimethylpyrimidin-4-yl)piperidin-1- yl)ethanone





C15


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1-(4-(5-(5-(2-chlorophenyl)-1,3,4-oxadiazol-2-yl)-2,6- dimethylpyrimidin-4-yl)piperidin-1-yl)-2-(2,6- difluorophenyl)ethanone





C16


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2-(2,6-difluorophenyl)-1-(4-(2,6-dimethyl-5-(5-(2- (trifluoromethyl)pyridin-4-yl)-1,3,4-oxadiazol-2-yl)pyrimidin- 4-yl)piperidin-1-yl)ethanone





C17


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2-(2,6-difluorophenyl)-1-(4-(2,6-dimethyl-5-(5-phenyl-1,3,4- oxadiazol-2-yl)pyrimidin-4-yl)piperidin-1-yl)ethanone





C18


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2-(2,6-difluorophenyl)-1-(4-(5-(5-(2-isopropylpyrimidin-4-yl)- 1,3,4-oxadiazol-2-yl)-2,6-dimethylpyrimidin-4-yl)piperidin-1- yl)ethanone





C19


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1-(4-(5-(5-(2-chloro-6-methylpyridin-4-yl)-1,3,4-oxadiazol-2- yl)-2,6-dimethylpyrimidin-4-yl)piperidin-1-yl)-2-(2,6- difluorophenyl)ethanone





C20


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1-(4-(5-(5-(5-chloropyridin-2-yl)-1,3,4-oxadiazol-2-yl)-2,6- dimethylpyrimidin-4-yl)piperidin-1-yl)-2-(2,6- difluorophenyl)ethanone





C21


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1-(4-(5-(5-(4-chloropyridin-2-yl)-1,3,4-oxadiazol-2-yl)-2,6- dimethylpyrimidin-4-yl)piperidin-1-yl)-2-(2,6- difluorophenyl)ethanone





C22


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1-(4-(5-(5-(2-chloropyridin-4-yl)-1,3,4-oxadiazol-2-yl)-2,6- dimethylpyrimidin-4-yl)piperidin-1-yl)-2-(2,6- difluorophenyl)ethanone





C23


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1-(4-(5-(5-(6-chloropyridin-3-yl)-1,3,4-oxadiazol-2-yl)-2,6- dimethylpyrimidin-4-yl)piperidin-1-yl)-2-(2,6- difluorophenyl)ethanone





C24


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(2,6-difluorophenyl)(4-(2,6-dimethyl-5-(5-(2- (trifluoromethyl)pyrimidin-4-yl)-1,3,4-oxadiazol-2- yl)pyrimidin-4-yl)piperidin-1-yl)methanone





C25


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1-(4-(2,6-dimethyl-5-(5-(2-(trifluoromethyl)pyrimidin-4-yl)- 1,3,4-oxadiazol-2-yl)pyrimidin-4-yl)piperidin-1-yl)-2-(2- fluorophenyl)ethanone





C26


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2-(2,6-difluorophenyl)-1-(4-(2,6-dimethyl-5-(5-(2- (trifluoromethyl)pyrimidin-4-yl)-1,3,4-oxadiazol-2- yl)pyrimidin-4-yl)piperidin-1-yl)propan-1-one





C27


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(2-chloro-6-fluorophenyl)(4-(2,6-dimethyl-5-(5-(2- (trifluoromethyl)pyrimidin-4-yl)-1,3,4-oxadiazol-2- yl)pyrimidin-4-yl)piperidin-1-yl)methanone





C28


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N-(2,6-difluorophenyl)-4-(2,6-dimethyl-5-(5-(2- (trifluoromethyl)pyrimidin-4-yl)-1,3,4-oxadiazol-2- yl)pyrimidin-4-yl)piperidine-1-carboxamide





C29


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N-(2-chlorophenyl)-4-(2,6-dimethyl-5-{5-[2- (trifluoromethyl)pyrimidin-4-yl]-1,3,4-oxadiazol-2- yl}pyrimidin-4-yl)piperidine-1-carboxamide





C30


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4-(2,6-dimethyl-5-{5-[2-(trifluoromethyl)pyrimidin-4-yl]- 1,3,4-oxadiazol-2-yl}pyrimidin-4-yl)-N-[2- (trifluoromethyl)phenyl]piperidine-1-carboxamide





C31


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N-(2,6-dichlorophenyl)-4-(2,6-dimethyl-5-{5-[2- (trifluoromethyl)pyrimidin-4-yl]-1,3,4-oxadiazol-2- yl}pyrimidin-4-yl)piperidin-1-carboxamide





C32


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4-(2,6-dimethyl-5-{5-[2-(trifluoromethyl)pyrimidin-4-yl]- 1,3,4-oxadiazol-2-yl}pyrimidin-4-yl)-N-{2- [(trifluoromethyl)oxy]phenyl}piperidine-1-carboxamide





C33


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2-(4-(1-((2,6-difluorophenyl)sulfonyl)piperidin-4-yl)-2,6- dimethylpyrimidin-5-yl)-5-(2-(trifluoromethyl)pyrimidin-4- yl)-1,3,4-oxadiazole





C34


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2-(4-(1-((2-fluorobenzyl)sulfonyl)piperidin-4-yl)-2,6- dimethylpyrimidin-5-yl)-5-(2-(trifluoromethyl)pyrimidin-4- yl)-1,3,4-oxadiazole





C35


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(R)-2-(2,6-Difluorophenyl)-1-(4-(2,6-dimethyl-5-(5-(2- (trifluoromethyl)pyrimidin-4-yl)-1,3,4-oxadiazol-2- yl)pyrimidin-4-yl)piperidin-1-yl)propan-1-one





C36


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N-(2,6-Difluorophenyl)-4-(2,6-dimethyl-5-(5-(2- (trifluoromethyl)pyrimidin-4-yl)-1,3,4-oxadiazol-2- yl)pyrimidin-4-yl)-N-methylpiperidine-1-carboxamide





C37


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2-deutero-1-(4-(6-(dideuteromethyl)-2-methyl-5-(5-(2- (trifluoromethyl)pyrimidin-4-yl)-1,3,4-oxadiazol-2- yl)pyrimidin-4-yl)piperidin-1-yl)-2-(2,6- difluorophenyl)ethanone





C38


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2,2-dideutero-2-(2,6-difluorophenyl)-1-(4-(2,6-dimethyl-5-(5- (2-(trifluoromethyl)pyrimidin-4-yl)-1,3,4-oxadiazol-2- yl)pyrimidin-4-yl)piperidin-1-yl)ethanone





C39


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2-(2,6-difluorophenyl)-1-(4-(2,6-dimethyl-5-(5-(2- (trifluoromethyl)pyrimidin-4-yl)-1,3,4-thiadiazol-2- yl)pyrimidin-4-yl)piperidin-1-yl)ethanethione





C40


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4-(2,6-dimethyl-5-(5-(2-(trifluoromethyl)pyrimidin-4-yl)- 1,3,4-oxadiazol-2-yl)pyrimidin-4-yl)-N-(2-fluoro-6- (trifluoromethyl)phenyl)piperidine-1-carboxamide





C41


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2-(2-chlorophenyl)-1-(4-(2,6-dimethyl-5-(5-(2- (trifluoromethyl)pyrimidin-4-yl)-1,3,4-oxadiazol-2- yl)pyrimidin-4-yl)piperidin-1-yl)ethanone





C42


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2-(3-chloropyridin-2-yl)-1-(4-(2,6-dimethyl-5-(5-(2- (trifluoromethyl)pyrimidin-4-yl)-1,3,4-oxadiazol-2- yl)pyrimidin-4-yl)piperidin-1-yl)ethanone





C43


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2-(2,6-difluorophenyl)-1-(4-(2,6-dimethyl-5-(5-(2- (trifluoromethyl)pyrimidin-4-yl)-1,3,4-oxadiazol-2- yl)pyrimidin-4-yl)piperidin-1-yl)-2,2-difluoroethanone





C44


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1-(4-(2,6-dimethyl-5-(5-(2-(trifluoromethyl)pyrimidin-4-yl)- 1,3,4-oxadiazol-2-yl)pyrimidin-4-yl)piperidin-1-yl)-2,2- difluoro-2-(2-fluorophenyl)ethanone





C45


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2-chlorophenyl 4-(2,6-dimethyl-5-(5-(2- (trifluoromethyl)pyrimidin-4-yl)-1,3,4-oxadiazol-2- yl)pyrimidin-4-yl)piperidine-1-carboxylate





C46


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N-(2,6-difluorophenyl)-4-(2,6-dimethyl-5-(5-(2- (trifluoromethyl)pyrimidin-4-yl)-1,3,4-oxadiazol-2- yl)pyrimidin-4-yl)piperidine-1-carbothioamide





C47


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4-(2,6-dimethyl-5-(5-(2-(trifluoromethyl)pyrimidin-4-yl)- 1,3,4-oxadiazol-2-yl)pyrimidin-4-yl)-N-(2- (trifluoromethyl)phenyl)piperidine-1-carbothioamide





C48


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4-(2-amino-6-methyl-5-(5-(2-(trifluoromethyl)pyrimidin-4-yl)- 1,3,4-oxadiazol-2-yl)pyrimidin-4-yl)-N-(2,6- difluorophenyl)piperidine-1-carboxamide





C49


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4-(2-amino-6-methyl-5-(5-(2-(trifluoromethyl)pyrimidin-4-yl)- 1,3,4-oxadiazol-2-yl)pyrimidin-4-yl)-N-(2-fluoro-6- (trifluoromethyl)phenyl)piperidine-1-carboxamide





C50


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2,6-difluorophenyl 4-(2-amino-6-methyl-5-(5-(2- (trifluoromethyl)pyrimidin-4-yl)-1,3,4-oxadiazol-2- yl)pyrimidin-4-yl)piperidine-1-carboxylate





C51


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2-chlorophenyl 4-(2-amino-6-methyl-5-(5-(2- (trifluoromethyl)pyrimidin-4-yl)-1,3,4-oxadiazol-2- yl)pyrimidin-4-yl)piperidine-1-carboxylate





C52


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2-fluorophenyl 4-(2-amino-6-methyl-5-(5-(2- (trifluoromethyl)pyrimidin-4-yl)-1,3,4-oxadiazol-2- yl)pyrimidin-4-yl)piperidine-1-carboxylate





C53


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4-fluorophenyl 4-(2-amino-6-methyl-5-(5-(2- (trifluoromethyl)pyrimidin-4-yl)-1,3,4-oxadiazol-2- yl)pyrimidin-4-yl)piperidine-1-carboxylate





C54


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2,5-difluorophenyl 4-(2-amino-6-methyl-5-(5-(2- (trifluoromethyl)pyrimidin-4-yl)-1,3,4-oxadiazol-2- yl)pyrimidin-4-yl)piperidine-1-carboxylate





C55


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3-fluorophenyl 4-(2-amino-6-methyl-5-(5-(2- (trifluoromethyl)pyrimidin-4-yl)-1,3,4-oxadiazol-2- yl)pyrimidin-4-yl)piperidine-1-carboxylate





C56


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2,4-difluorophenyl 4-(2-amino-6-methyl-5-(5-(2- (trifluoromethyl)pyrimidin-4-yl)-1,3,4-oxadiazol-2- yl)pyrimidin-4-yl)piperidine-1-carboxylate





C57


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2-methoxyphenyl 4-(2-amino-6-methyl-5-(5-(2- (trifluoromethyl)pyrimidin-4-yl)-1,3,4-oxadiazol-2- yl)pyrimidin-4-yl)piperidine-1-carboxylate





C58


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N-(2,6-difluorophenyl)-4-(6-methyl-2-(methylthio)-5-(5-(6- (trifluoromethyl)pyridin-2-yl)-1,3,4-oxadiazol-2-yl)pyrimidin- 4-yl)piperidine-1-carboxamide





C59


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4-(2-amino-6-methyl-5-(5-(6-(trifluoromethyl)pyridin-2-yl)- 1,3,4-oxadiazol-2-yl)pyrimidin-4-yl)-N-(2,6- difluorophenyl)piperidine-1-carboxamide





C60


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N-(2,6-difluorophenyl)-4-(2-methoxy-6-methyl-5-(5-(6- (trifluoromethyl)pyridin-2-yl)-1,3,4-oxadiazol-2-yl)pyrimidin- 4-yl)piperidine-1-carboxamide





C61


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N-(2,6-difluorophenyl)-4-(2-methoxy-6-methyl-5-(5-(2- (trifluoromethyl)pyrimidin-4-yl)-1,3,4-oxadiazol-2- yl)pyrimidin-4-yl)piperidine-1-carboxamide





C62


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2-(2,6-difluorophenyl)-1-(4-(2-methyl-5-(5-(2- (trifluoromethyl)pyrimidin-4-yl)-1,3,4-oxadiazol-2- yl)pyrimidin-4-yl)piperidin-1-yl)ethanone





C63


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N-(2,6-difluorophenyl)-4-(2,6-dimethyl-5-(3-(3- (trifluoromethyl)phenyl)-1,2,4-oxadiazol-5-yl)pyrimidin-4- yl)piperidine-1-carboxamide





C64


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4-(2,6-dimethyl-5-(3-(3-(trifluoromethyl)phenyl)-1,2,4- oxadiazol-5-yl)pyrimidin-4-yl)-N-(2-fluoro-6- (trifluoromethyl)phenyl)piperidine-1-carboxamide





C65


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(2,6-difluorophenyl)(4-(2,6-dimethyl-5-(3-(3- (trifluoromethyl)phenyl)-1,2,4-oxadiazol-5-yl)pyrimidin-4- yl)piperidin-1-yl)methanone





C66


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1-(4-(5-(5-(3-chlorophenyl)oxazol-2-yl)-2,6- dimethylpyrimidin-4-yl)piperidin-1-yl)-2-(2,6- difluorophenyl)ethanone





C67


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4-(5-(5-(3-chlorophenyl)oxazol-2-yl)-2,6-dimethylpyrimidin- 4-yl)-N-(2,6-difluorophenyl)piperidine-1-carboxamide





C68


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N-(2,6-difluorophenyl)-4-(2,6-dimethyl-5-(5-(2- (trifluoromethyl)pyrimidin-4-yl)oxazol-2-yl)pyrimidin-4- yl)piperidine-1-carboxamide





C69


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4-(2-amino-6-methyl-5-(5-(2-(trifluoromethyl)pyrimidin-4- yl)oxazol-2-yl)pyrimidin-4-yl)-N-(2,6- difluorophenyl)piperidine-1-carboxamide





C70


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4-(2-amino-6-methyl-5-(2-(2-(trifluoromethyl)pyrimidin-4- yl)oxazol-5-yl)pyrimidin-4-yl)-N-(2,6- difluorophenyl)piperidine-1-carboxamide





C71


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4-(2-amino-6-methyl-5-(5-(2-(trifluoromethyl)pyrimidin-4-yl)- 1,3,4-oxadiazol-2-yl)pyrimidin-4-yl)-N-(2- chlorophenyl)piperidine-1-carboxamide
















TABLE 6









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Cpd
R1
G
Q10
Q16
Chemical Name





D1 
Me
CH2


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1-(4-(5-(1-((3-chlorophenyl)amino)-2- hydroxypropan-2-yl)-2-methylpyrimidin-4- yl)piperidin-1-yl)-2-(2,6- difluorophenyl)ethanone





D2 
Me
CH2


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2-(2,6-difluorophenyl)-1-(4-(5-(2-hydroxy- 1-((6-(trifluoromethyl)pyridin-2- yl)amino)propan-2-yl)-2-methylpyrimidin- 4-yl)piperidin-1-yl)ethanone





D3 
Me
CH2


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2-(2,6-difluorophenyl)-1-(4-(5-(1-((3,5- dimethylphenyl)amino)-2-hydroxypropan- 2-yl)-2-methylpyrimidin-4-yl)piperidin-1- yl)ethanone





D4 
Me
CH2


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2-(2,6-difluorophenyl)-1-(4-(5-(2-hydroxy- 1-((3- (trifluoromethyl)phenyl)amino)propan-2- yl)-2-methylpyrimidin-4-yl)piperidin-1- yl)ethanone





D5 
Me
CH2


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2-(2,6-difluorophenyl)-1-(4-(5-(2-hydroxy- 1-((2-(trifluoromethyl)pyrimidin-4- yl)amino)propan-2-yl)-2-methylpyrimidin- 4-yl)piperidin-1-yl)ethanone





D6 
Me
CH2


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2-(2,6-difluorophenyl)-1-(4-(5-(1-((4,6- dimethylpyridin-2-yl)amino)-2- hydroxypropan-2-yl)-2-methylpyrimidin-4- yl)piperidin-1-yl)ethanone





D7 
Me
CH2


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1-(4-(5-(1-((2-chloropyridin-4-yl)amino)-2- hydroxypropan-2-yl)-2-methylpyrimidin-4- yl)piperidin-1-yl)-2-(2,6- difluorophenyl)ethanone





D8 
Me
CH2


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2-(2,6-difluorophenyl)-1-(4-(5-(2-hydroxy- 1-((4-(trifluoromethyl)pyridin-2- yl)amino)propan-2-yl)-2-methylpyrimidin- 4-yl)piperidin-1-yl)ethanone





D9 
Me
CH2


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2-(2,6-difluorophenyl)-1-(4-(5-(2-hydroxy- 1-((4-methylpyridin-2-yl)amino)propan-2- yl)-2-methylpyrimidin-4-yl)piperidin-1- yl)ethanone





D10
Me
CH2


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2-(2,6-difluorophenyl)-1-(4-(5-(2-hydroxy- 1-((1-methyl-1H-pyrazol-3- yl)amino)propan-2-yl)-2-methylpyrimidin- 4-yl)piperidin-1-yl)ethanone





D11
Me
CH2


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2-(2,6-difluorophenyl)-1-(4-(5-(1-(3,5- dimethylphenoxy)-2-hydroxypropan-2-yl)- 2-methylpyrimidin-4-yl)piperidin-1- yl)ethanone





D12
Me
CH2


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1-(4-(5-(1-(3-chlorophenoxy)-2- hydroxypropan-2-yl)-2-methylpyrimidin-4- yl)piperidin-1-yl)-2-(2,6- difluorophenyl)ethanone





D13
Me
CH2


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1-(4-(5-(1-((5-chloropyridin-3-yl)oxy)-2- hydroxypropan-2-yl)-2-methylpyrimidin-4- yl)piperidin-1-yl)-2-(2,6- difluorophenyl)ethanone





D14
Me
CH2


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2-(2,6-difluorophenyl)-1-(4-(5-(2-hydroxy- 1-(pyridin-3-yloxy)propan-2-yl)-2- methylpyrimidin-4-yl)piperidin-1- yl)ethanone





D15
Me
CH2


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2-(2,6-difluorophenyl)-1-(4-(5-(4-(3,5- dimethylphenyl)-2-hydroxybutan-2-yl)-2- methylpyrimidin-4-yl)piperidin-1- yl)ethanone





D16
Me
NH


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N-(2,6-Difluorophenyl)-4-[5-(1-hydroxy-1- methyl-2-{[6-(trifluoromethyl)pyridin-2- yl]amino}ethyl)-2-methylpyrimidin-4- yl]piperidine-1-carboxamide





D17
Me
NH


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N-(2,6-Difluorophenyl)-4-[5-(1-hydroxy-1- methyl-2-{[2-(trifluoromethyl)pyrimidin-4- yl]amino}ethyl)-2-methylpyrimidin-4- yl]piperidine-1-carboxamide





D18
Me
NH


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N-[2-Fluoro-6-(trifluoromethyl)phenyl]-4- [5-(1-hydroxy-1-methyl-2-{[2- (trifluoromethyl)pyrimidin-4- yl]amino}ethyl)-2-methylpyrimidin-4- yl]piperidine-1-carboxamide





D19
Me
NH


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N-(2,6-Difluorophenyl)-4-[5-(1-hydroxy-1- methyl-2-{methyl[2- (trifluoromethyl)pyrimidin-4- yl]amino}ethyl)-2-methylpyrimidin-4- yl]piperidine-1-carboxamide





D20
Me
CH2


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2-(4-{1-[(2,6- Difluorophenyl)acetyl]piperidin-4-yl}-2- methylpyrimidin-5-yl)-1-{methyl[2- (trifluoromethyl)pyrimidin-4- yl]amino}propan-2-ol





D21
Me
NH


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N-(2,6-Difluorophenyl)-4-[5-(1-hydroxy-1- methyl-2-{[4-(trifluoromethyl)pyrimidin-2- yl]amino}ethyl)-2-methylpyrimidin-4- yl]piperidine-1-carboxamide





D22
Me
NH


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N-[2-Fluoro-6-(trifluoromethyl)phenyl]-4- [5-(1-hydroxy-1-methyl-2-{[4- (trifluoromethyl)pyrimidin-2- yl]amino}ethyl)-2-methylpyrimidin-4- yl]piperidine-1-carboxamide





D23
Me
CH2


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2-(4-{1-[(2,6- Difluorophenyl)acetyl]piperidin-4-yl}-2- methylpyrimidin-5-yl)-1-{[4- (trifluoromethyl)pyrimidin-2- yl]amino}propan-2-ol





D24
Me
CH2


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2-(4-{1-[(2,6- difluorophenyl)acetyl]piperidin-4-yl}-2- methylpyrimidin-5-yl)-1-{[6- (trifluoromethyl)pyridin-2-yl]oxy}propan- 2-ol





D25
Me
NH


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N-(2,6-difluorophenyl)-4-[5-(1-hydroxy-1- methyl-2-{[6-(trifluoromethyl)pyridin-2- yl]oxy}ethyl)-2-methylpyrimidin-4- yl]piperidine-1-carboxamide





D26
SMe
NH


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N-(2,6-Difluorophenyl)-4-[5-(1-hydroxy-1- methyl-2-{[6-(trifluoromethyl)pyridin-2- yl]oxy}ethyl)-2-(methylthio)pyrimidin-4- yl]piperidine-1-carboxamide





D27
NH2
NH


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4-[2-Amino-5-(1-hydroxy-1-methyl-2-{[6- (trifluoromethyl)pyridin-2- yl]oxy}ethyl)pyrimidin-4-yl]-N-(2,6- difluorophenyl)piperidine-1-carboxamide





D28
SMe
NH


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N-(2,6-Difluorophenyl)-4-[5-(1-hydroxy-1- methyl-2-{[2-(trifluoromethyl)pyrimidin-4- yl]oxy}ethyl)-2-(methylthio)pyrimidin-4- yl]piperidine-1-carboxamide





D29
NH2
NH


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4-[2-Amino-5-(1-hydroxy-1-methyl-2-{[2- (trifluoromethyl)pyrimidin-4- yl]oxy}ethyl)pyrimidin-4-yl]-N-(2,6- difluorophenyl)piperidine-1-carboxamide





D30
NH2
CH2


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2-(2-Amino-4-{1-[(2,6- difluorophenyl)acetyl]piperidin-4- yl}pyrimidin-5-yl)-1-{[2- (trifluoromethyl)pyrimidin-4- yl]oxy}propan-2-ol





D31
NHAc
NH


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4-[2-(Acetylamino)-5-(1-hydroxy-1- methyl-2-{[2-(trifluoromethyl)pyrimidin-4- yl]oxy}ethyl)pyrimidin-4-yl]-N-(2,6- difluorophenyl)piperidine-1-carboxamide





D32
NHAc
NH


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4-[2-(Acetylamino)-5-(1-hydroxy-1- methyl-2-{[6-(trifluoromethyl)pyridin-2- yl]oxy}ethyl)pyrimidin-4-yl]-N-(2,6- difluorophenyl)piperidine-1-carboxamide





D33
NHAc
CH2


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N-[4-{1-[(2,6- Difluorophenyl)acetyl]piperidin-4-yl}-5-(1- hydroxy-1-methyl-2-{[2- (trifluoromethyl)pyrimidin-4- yl]oxy}ethyl)pyrimidin-2-yl]acetamide





D34


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NH


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4-[2-(Cyclopropylamino)-5-(1-hydroxy-1- methyl-2-{[2-(trifluoromethyl)pyrimidin-4- yl]oxy}ethyl)pyrimidin-4-yl]-N-(2,6- difluorophenyl)piperidine-1-carboxamide





D35
NHEt
NH


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N-(2,6-Difluorophenyl)-4-[2-(ethylamino)- 5-(1-hydroxy-1-methyl-2-{[2- (trifluoromethyl)pyrimidin-4- yl]oxy}ethyl)pyrimidin-4-yl]piperidine-1- carboxamide





D36
NHMe
NH


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N-(2,6-Difluorophenyl)-4-[5-(1-hydroxy-1- methyl-2-{[2-(trifluoromethyl)pyrimidin-4- yl]oxy}ethyl)-2-(methylamino)pyrimidin-4- yl]piperidine-1-carboxamide





D37


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NH


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4-[2-({[2,4- Bis(methyloxy)phenyl]methyl}amino)-5- (1-hydroxy-1-methyl-2-{[2- (trifluoromethyl)pyrimidin-4- yl]oxy}ethyl)pyrimidin-4-yl]-N-(2,6- difluorophenyl)piperidine-1-carboxamide





D38
NMe2
NH


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N-(2,6-Difluorophenyl)-4-[2- (dimethylamino)-5-(1-hydroxy-1-methyl-2- {[2-(trifluoromethyl)pyrimidin-4- yl]oxy}ethyl)pyrimidin-4-yl]piperidine-1- carboxamide





D39
NHCH2CHF2
NH


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4-{2-[(2,2-Difluoroethyl)amino]-5-(1- hydroxy-1-methyl-2-{[2- (trifluoromethyl)pyrimidin-4- yl]oxy}ethyl)pyrimidin-4-yl}-N-(2,6- difluorophenyl)piperidine-1-carboxamide





D40
OiPr
NH


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N-(2,6-Difluorophenyl)-4-{5-(1-hydroxy-1- methyl-2-{[2-(trifluoromethyl)pyrimidin-4- yl]oxy}ethyl)-2-[(1- methylethyl)oxy]pyrimidin-4-yl}piperidine- 1-carboxamide





D41
OCH2CHF2
NH


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4-{2-[(2,2-Difluoroethyl)oxy]-5-(1- hydroxy-1-methyl-2-{[2- (trifluoromethyl)pyrimidin-4- yl]oxy}ethyl)pyrimidin-4-yl}-N-(2,6- difluorophenyl)piperidine-1-carboxamide





D42
OCH(CH2F)2
NH


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N-(2,6-Difluorophenyl)-4-[2-{[2-fluoro-1- (fluoromethyl)ethyl]oxy}-5-(1-hydroxy-1- methyl-2-{[2-(trifluoromethyl)pyrimidin-4- yl]oxy}ethyl)pyrimidin-4-yl]piperidine-1- carboxamide





D43
OCH2CH2F
NH


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N-(2,6-Difluorophenyl)-4-{2-[(2- fluoroethyl)oxy]-5-(1-hydroxy-1-methyl-2- {[2-(trifluoromethyl)pyrimidin-4- yl]oxy}ethyl)pyrimidin-4-yl}piperidine-1- carboxamide





D44
OMe
NH


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N-(2,6-Difluorophenyl)-4-[5-(1-hydroxy-1- methyl-2-{[2-(trifluoromethyl)pyrimidin-4- yl]oxy}ethyl)-2-(methyloxy)pyrimidin-4- yl]piperidine-1-carboxamide





D45
OMe
NH


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N-(2,6-Difluorophenyl)-4-[5-(1-hydroxy-1- methyl-2-{[6-(trifluoromethyl)pyridin-2- yl]oxy}ethyl)-2-(methyloxy)pyrimidin-4- yl]piperidine-1-carboxamide





D46
NH2
O


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2,6-Difluorophenyl 4-[2-amino-5-(1- hydroxy-1-methyl-2-{[2- (trifluoromethyl)pyrimidin-4- yl]oxy}ethyl)pyrimidin-4-yl]piperidine-1- carboxylate





D47
Me
NH


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N-(2,6-Difluorophenyl)-4-(5-{1-hydroxy-1- methyl-2-[6-(trifluoromethyl)pyridin-2- yl]ethyl}-2-methylpyrimidin-4- yl)piperidine-1-carboxamide





D48
NH2
O


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2,6-Difluorophenyl 4-[2-amino-5-(1- hydroxy-1-methyl-2-{[6- (trifluoromethyl)pyridin-2- yl]oxy}ethyl)pyrimidin-4-yl]piperidine-1- carboxylate





D49
NH2
O


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2-Fluorophenyl 4-[2-amino-5-(1-hydroxy- 1-methyl-2-{[2-(trifluoromethyl)pyrimidin- 4-yl]oxy}ethyl)pyrimidin-4-yl]piperidine-1- carboxylate





D50
NH2
O


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4-Fluorophenyl 4-[2-amino-5-(1-hydroxy- 1-methyl-2-{[2-(trifluoromethyl)pyrimidin- 4-yl]oxy}ethyl)pyrimidin-4-yl]piperidine-1- carboxylate
















TABLE 7









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Cpd
R11
Q11
Chemical Name





E1 


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2-(2,6-difluorophenyl)-1-(4-(5-(2-((3,5- dimethylbenzyl)oxy)-1-methoxypropan-2-yl)-2- methylpyrimidin-4-yl)piperidin-1-yl)ethanone





E2 


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2-(2,6-difluorophenyl)-1-(4-(5-(2-((3,5- dimethylbenzyl)oxy)-1-ethoxypropan-2-yl)-2- methylpyrimidin-4-yl)piperidin-1-yl)ethanone





E3 


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2-(2,6-difluorophenyl)-1-(4-(5-(1-(2,3- dihydroxypropoxy)-2-((3,5- dimethylbenzyl)oxy)propan-2-yl)-2- methylpyrimidin-4-yl)piperidin-1-yl)ethanone





E4 
—CH2OH


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2-(2,6-difluorophenyl)-1-(4-(5-(2-((3,5- dimethylbenzyl)oxy)-1-hydroxypropan-2-yl)-2- methylpyrimidin-4-yl)piperidin-1-yl)ethanone





E5 
Me


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2-(2,6-difluorophenyl)-1-(4-(5-(2-((3,5- dimethylbenzyl)oxy)propan-2-yl)-2- methylpyrimidin-4-yl)piperidin-1-yl)ethanone





E6 
Me


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1-(4-(5-(2-((3-chlorobenzyl)oxy)propan-2-yl)-2- methylpyrimidin-4-yl)piperidin-1-yl)-2-(2,6- difluorophenyl)ethanone





E7 
Me


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1-(4-(5-(2-((6-chloropyridin-2- yl)methoxy)propan-2-yl)-2-methylpyrimidin-4- yl)piperidin-1-yl)-2-(2,6-difluorophenyl)ethanone





E8 


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2-(2,6-difluorophenyl)-1-(4-(5-(1-(2,3- dihydroxypropoxy)-2-((3,5- dimethylbenzyl)oxy)propan-2-yl)-2- methylpyrimidin-4-yl)piperidin-1-yl)ethanone





E9 


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2-(2,6-difluorophenyl)-1-(4-(5-(1-(2,3- dihydroxypropoxy)-2-((3,5- dimethylbenzyl)oxy)propan-2-yl)-2- methylpyrimidin-4-yl)piperidin-1-yl)ethanone





E10
H


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2-(2,6-difluorophenyl)-1-(4-(5-(((3,5- dimethylbenzyl)oxy)methyl)-2-methylpyrimidin- 4-yl)piperidin-1-yl)ethanone





E11
H


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2-(2,6-difluorophenyl)-1-(4-(5-(1-((3,5- dimethylbenzyl)oxy)ethyl)-2-methylpyrimidin-4- yl)piperidin-1-yl)ethanone
















TABLE 8









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Cpd
G
R6
Q17
Chemical Name





E12
NH
F


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N-(2,6-Difluorophenyl)-4-[5-(1-fluoro-1- methyl-2-{[6-(trifluoromethyl)pyridin-2- yl]oxy}ethyl)-2-methylpyrimidin-4- yl]piperidine-1-carboxamide





E13
NH
CF3


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4-[5-(1-Fluoro-1-methyl-2-{[6- (trifluoromethyl)pyridin-2-yl]oxy}ethyl)-2- methylpyrimidin-4-yl]-N-[2-fluoro-6- (trifluoromethyl)phenyl]piperidine-1- carboxamide





E14
CH2
F


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4-{1-[(2,6-Difluorophenyl)acetyl]piperidin-4- yl}-5-{2-[(3,5-dimethylphenyl)oxy]-1-fluoro- 1-methylethyl}-2-methylpyrimidine





E15
NH
F


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N-(2,6-Difluorophenyl)-4-[5-(1-fluoro-1- methyl-2-{[2-(trifluoromethyl)pyrimidin-4- yl]amino}ethyl)-2-methylpyrimidin-4- yl]piperidine-1-carboxamide
















TABLE 9









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Cpd
R12
R13
Q12
G
Chemical Name





F1
Me
Me


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CH2
2-(2,6-difluorophenyl)-1-(4-(2-methyl-5-(2- methyl-1-((2-(trifluoromethyl)pyrimidin-4- yl)amino)propan-2-yl)pyrimidin-4- yl)piperidin-1-yl)ethanone





F2
Me
Me


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CH2
2-(2,6-difluorophenyl)-1-(4-(2-methyl-5-(2- methyl-1-((4-(trifluoromethyl)pyrimidin-2- yl)amino)propan-2-yl)pyrimidin-4- yl)piperidin-1-yl)ethanone





F3
Me
Me


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CH2
N-[2-(4-{1-[(2,6- difluorophenyl)acetyl]piperidin-4-yl}-2- methylpyrimidin-5-yl)-2-methylpropyl]-6- (trifluoromethyl)pyridin-2-amine





F4
Me
—CO2Me


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CH2
methyl 2-(4-(1-(2-(2,6- difluorophenyl)acetyl)piperidin-4-yl)-2- methylpyrimidin-5-yl)-2-methyl-3-((2- (trifluoromethyl)pyrimidin-4- yl)amino)propanoate





F5
Me
CH2OH


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CH2
2-(2,6-difluorophenyl)-1-(4-(5-(1-hydroxy-2- methyl-3-(2-(trifluoromethyl)pyrimidin-4- ylamino)propan-2-yl)-2-methylpyrimidin-4- yl)piperidin-1-yl)ethanone





F6
H
H


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CH2
2-(2,6-difluorophenyl)-1-(4-(5-(((3,5- dimethylbenzyl)amino)methyl)-2- methylpyrimidin-4-yl)piperidin-1- yl)ethanone





F7
H
CF3


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CH2
2-(2,6-difluorophenyl)-1-(4-(5-(1-((3,5- dimethylbenzyl)amino)-2,2,2-trifluoroethyl)- 2-methylpyrimidin-4-yl)piperidin-1- yl)ethanone





F8
Me
Me


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NH
N-(2,6-difluorophenyl)-4-(2-methyl-5-(2- methyl-1-((2-(trifluoromethyl)pyrimidin-4- yl)amino)propan-2-yl)pyrimidin-4- yl)piperidine-1-carboxamide





F9
H
Me


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CH2
2-(2,6-difluorophenyl)-1-(4-(5-(1-((3,5- dimethylbenzyl)amino)ethyl)-2- methylpyrimidin-4-yl)piperidin-1- yl)ethanone
















TABLE 10









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Cpd
R1
R2
Chemical Name





G1
Me
H
N′-(3-chlorophenyl)-4-(1-(2-(2,6- difluorophenyl)acetyl)piperidin-4-yl)-2-methylpyrimidine-5- carbohydrazide


G2
Cyclopropyl
H
N′-(3-chlorophenyl)-2-cyclopropyl-4-(1-(2-(2,6- difluorophenyl)acetyl)piperidin-4-yl)pyrimidine-5- carbohydrazide


G3
Et
H
N′-(3-chlorophenyl)-4-(1-(2-(2,6- difluorophenyl)acetyl)piperidin-4-yl)-2-ethylpyrimidine-5- carbohydrazide


G4
Me
Me
N′-(3-chlorophenyl)-4-(1-(2-(2,6- difluorophenyl)acetyl)piperidin-4-yl)-2,6-dimethylpyrimidine-5- carbohydrazide
















TABLE 11









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Cpd
R1
R2
Q13
Chemical Name





H1
Me
H


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4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-yl)- 2-methyl-N-(3- (trifluoromethyl)phenoxy)pyrimidine-5- carboxamide





H2
Me
H


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4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-yl)- N-(3,5-dimethylphenoxy)-2-methylpyrimidine-5- carboxamide





H3
Me
H


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N-(3-chlorophenoxy)-4-(1-(2-(2,6- difluorophenyl)acetyl)piperidin-4-yl)-2- methylpyrimidine-5-carboxamide





H4
Me
H


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4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-yl)- 2-methyl-N-(3- (trifluoromethoxy)phenoxy)pyrimidine-5- carboxamide





H5
Me
Me


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N-(3-chlorophenoxy)-4-(1-(2-(2,6- difluorophenyl)acetyl)piperidin-4-yl)-2,6- dimethylpyrimidine-5-carboxamide





H6
Me
H


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N-(3-chloro-5-fluorophenoxy)-4-(1-(2-(2,6- difluorophenyl)acetyl)piperidin-4-yl)-2- methylpyrimidine-5-carboxamide





H7
Me
H


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4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-yl)- 2-methyl-N-phenoxypyrimidine-5-carboxamide
















TABLE 12









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Cpd
R1
R2
R6
G
Q14
Chemical Name





J1
Me
H
F
CH2


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(E)-2-(2,6-difluorophenyl)-1-(4-(5- (3-(3,5-dimethylphenyl)prop-1-en-1- yl)-2-methylpyrimidin-4- yl)piperidin-1-yl)ethanone





J2
Me
H
F
CH2


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(Z)-2-(2,6-difluorophenyl)-1-(4-(5- (3-(3,5-dimethylphenyl)prop-1-en-1- yl)-2-methylpyrimidin-4- yl)piperidin-1-yl)ethanone





J3
Me
H
F
CH2


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2-(2,6-difluorophenyl)-1-(4-(5-(3- (3,5-dimethylphenyl)propyl)-2- methylpyrimidin-4-yl)piperidin-1- yl)ethanone





L1
H
H
F
CH2


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N-(3,4-dichlorobenzyl)-4-(1-(2-(2,6- difluorophenyl)acetyl)piperidin-4- yl)pyrimidine-5-carbothioamide





M1 
Me
H
F
CH2


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2-(3-chlorophenoxy)-1-(4-(1-(2-(2,6- difluorophenyl)acetyl)piperidin-4- yl)-2-methylpyrimidin-5-yl)ethanone





M2 
SMe
H
F
NH


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N-(2,6-Difluorophenyl)-4-[2- (methylthio)-5-({[2- (trifluoromethyl)pyrimidin-4- yl]oxy}acetyl)pyrimidin-4- yl]piperidine-1-carboxamide





M3 
NH2
H
F
O


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2,6-Difluorophenyl 4-[2-amino-5- ({[2-(trifluoromethyl)pyrimidin-4- yl]oxy}acetyl)pyrimidin-4- yl]piperidine-1-carboxylate





M4 
Me
H
F
NH


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N-(2,6-Difluorophenyl)-4-[2-methyl- 5-({[6-(trifluoromethyl)pyridin-2- yl]oxy}acetyl)pyrimidin-4- yl]piperidine-1-carboxamide





M5 
NH2
H
F
CH2


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1-(2-Amino-4-{1-[(2,6- difluorophenyl)acetyl]piperidin-4- yl}pyrimidin-5-yl)-2-{[2- (trifluoromethyl)pyrimidin-4- yl]oxy}ethanone





M6 
NH2
H
F
NH


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4-[2-Amino-5-({[2- (trifluoromethyl)pyrimidin-4- yl]oxy}acetyl)pyrimidin-4-yl]-N- (2,6-difluorophenyl)piperidine-1- carboxamide





M7 
NHCH2CH2F
H
F
NH


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N-(2,6-Difluorophenyl)-4-{2-[(2- fluoroethyl)amino]-5-({[2- (trifluoromethyl)pyrimidin-4- yl]oxy}acetyl)pyrimidin-4- yl}piperidine-1-carboxamide





M8 
Me
Me
F
NH


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N-(2,6-Difluorophenyl)-4-[2,6- dimethyl-5-({[2- (trifluoromethyl)pyrimidin-4- yl]oxy}acetyl)pyrimidin-4- yl]piperidine-1-carboxamide





M9 
Me
Me
F
NH


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N-(2,6-Difluorophenyl)-4-[5-(1- hydroxy-2-{[2- (trifluoromethyl)pyrimidin-4- yl]oxy}ethyl)-2,6- dimethylpyrimidin-4-yl]piperidine-1- carboxamide





M10
NH2
Me
F
NH


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4-[2-Amino-6-methyl-5-({[2- (trifluoromethyl)pyrimidin-4- yl]oxy}acetyl)pyrimidin-4-yl]-N- (2,6-difluorophenyl)piperidine-1- carboxamide





M11
NH2
Me
F
NH


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4-[2-Amino-6-methyl-5-({[6- (trifluoromethyl)pyridin-2- yl]oxy}acetyl)pyrimidin-4-yl]-N- (2,6-difluorophenyl)piperidine-1- carboxamide





M12
NHAc
Me
F
NH


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4-[2-(Acetylamino)-6-methyl-5-({[6- (trifluoromethyl)pyridin-2- yl]oxy}acetyl)pyrimidin-4-yl]-N- (2,6-difluorophenyl)piperidine-1- carboxamide





M13
NH2
H
F



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1-(2-Amino-4-{1-[(2,6- difluorophenyl)carbonyl]piperidin-4- yl}pyrimidin-5-yl)-2-{[2- (trifluoromethyl)pyrimidin-4- yl]oxy}ethanone





M14
NH2
H
H
O


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2-Fluorophenyl 4-[2-amino-5-({[6- (trifluoromethyl)pyridin-2- yl]oxy}acetyl)pyrimidin-4- yl]piperidine-1-carboxylate
















TABLE 13









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Cpd
Q15
Chemical Name





I1


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4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-yl)-2-methyl- 6-oxo-N-((6-(trifluoromethyl)pyridin-2-yl)methyl)-1,6- dihydropyrimidine-5-carboxamide





I3


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4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-yl)-N-(3,5- dimethylbenzyl)-2-methyl-6-oxo-1,6-dihydropyrimidine-5- carboxamide





I4


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N-(3-chlorobenzyl)-4-(1-(2-(2,6- difluorophenyl)acetyl)piperidin-4-yl)-2-methyl-6-oxo-1,6- dihydropyrimidine-5-carboxamide





I5


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4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-yl)-2-methyl- 6-oxo-N-((2-(trifluoromethyl)pyridin-4-yl)methyl)-1,6- dihydropyrimidine-5-carboxamide





I6


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(E)-4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-yl)-2- methyl-6-oxo-1,6-dihydropyrimidine-5-carbaldehyde O-(3- (trifluoromethyl)phenyl) oxime
















TABLE 14









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Cpd
R3
Chemical Name





I7
Me
4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-yl)-1,2- dimethyl-6-oxo-N-((6-(trifluoromethyl)pyridin-2-yl)methyl)- 1,6-dihydropyrimidine-5-carboxamide


I8
Et
4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-yl)-1-ethyl-2- methyl-6-oxo-N-((6-(trifluoromethyl)pyridin-2-yl)methyl)- 1,6-dihydropyrimidine-5-carboxamide


















TABLE 15





Cpd
Structure
Chemical Name







N1 


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N-(2,6-difluorophenyl)-4-(5-(1-hydroxy-2-(6- (trifluoromethyl)pyridin-2-yloxy)ethyl)-2- methylpyrimidin-4-yl)piperidine-1-carboxamide





N2 


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4-(2-amino-5-(1-hydroxy-2-(2- (trifluoromethyl)pyrimidin-4-yloxy)ethyl)pyrimidin- 4-yl)-N-(2,6-difluorophenyl)piperidine-1- carboxamide





N3 


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4-(2-amino-5-(1-hydroxy-2-(6- (trifluoromethyl)pyridin-2-yloxy)ethyl)pyrimidin-4- yl)-N-(2,6-difluorophenyl)piperidine-1-carboxamide





N4 


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N-(2,6-difluorophenyl)-4-(5-(1-hydroxy-2-(6- (trifluoromethyl)pyridin-2-yloxy)ethyl)-2- methoxypyrimidin-4-yl)piperidine-1-carboxamide





N5 


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N-(2,6-difluorophenyl)-4-(5-(1-hydroxy-2-(2- (trifluoromethyl)pyrimidin-4-yloxy)ethyl)-2,6- dimethylpyrimidin-4-yl)piperidine-1-carboxamide





N6 


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N-(2,6-difluorophenyl)-4-(5-(1-hydroxy-2-(6- (trifluoromethyl)pyridin-2-yloxy)ethyl)-2,6- dimethylpyrimidin-4-yl)piperidine-1-carboxamide





N7 


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4-(2-amino-5-(1-hydroxy-2-(2- (trifluoromethyl)pyrimidin-4-yloxy)ethyl)-6- methylpyrimidin-4-yl)-N-(2,6- difluorophenyl)piperidine-1-carboxamide





N8 


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N-(2,6-difluorophenyl)-4-(5-(1-hydroxy-2-(2- (trifluoromethyl)pyrimidin-4-yloxy)ethyl)-2- methoxy-6-methylpyrimidin-4-yl)piperidine-1- carboxamide





N9 


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4-(2-amino-5-(1-hydroxy-2-(6- (trifluoromethyl)pyridin-2-yloxy)ethyl)-6- methylpyrimidin-4-yl)-N-(2,6- difluorophenyl)piperidine-1-carboxamide





N10


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4-(2-acetamido-5-(1-hydroxy-2-(6- (trifluoromethyl)pyridin-2-yloxy)ethyl)-6- methylpyrimidin-4-yl)-N-(2,6- difluorophenyl)piperidine-1-carboxamide





N11


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1-(2-acetamido-4-(1-(2,6- difluorophenylcarbamoyl)piperidin-4-yl)-6- methylpyrimidin-5-yl)-2-(6- (trifluoromethyl)pyridin-2-yloxy)ethyl acetate





N12


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4-(2-amino-5-(1-hydroxy-2-(2- (trifluoromethyl)pyrimidin-4- ylamino)ethyl)pyrimidin-4-yl)-N-(2,6- difluorophenyl)piperidine-1-carboxamide





N13


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2,6-difluorophenyl 4-(2-amino-5-(1-hydroxy-2-(2- (trifluoromethyl)pyrimidin-4-yloxy)ethyl)pyrimidin- 4-yl)piperidine-1-carboxylate





N14


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4-(5-(1,1-difluoro-2-(6-(trifluoromethyl)pyridin-2- yloxy)ethyl)-2-methylpyrimidin-4-yl)-N-(2,6- difluorophenyl)piperidine-1-carboxamide





N15


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4-(5-(1,1-difluoro-2-(6-(trifluoromethyl)pyridin-2- yloxy)ethyl)-2-methylpyrimidin-4-yl)-N-(2-fluoro-6- (trifluoromethyl)phenyl)piperidine-1-carboxamide





N16


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4-(2-amino-5-(1,1-difluoro-2-(6- (trifluoromethyl)pyridin-2-yloxy)ethyl)pyrimidin-4- yl)-N-(2-fluoro-6- (trifluoromethyl)phenyl)piperidine-1-carboxamide





N17


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4-(2-amino-5-(1,1-difluoro-2-(2- (trifluoromethyl)pyrimidin-4-yloxy)ethyl)pyrimidin- 4-yl)-N-(2-fluoro-6- (trifluoromethyl)phenyl)piperidine-1-carboxamide





N18


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4-(5-(1,1-difluoro-2-(2-(trifluoromethyl)pyrimidin- 4-ylamino)ethyl)-2-methylpyrimidin-4-yl)-N-(2,6- difluorophenyl)piperidine-1-carboxamide





N19


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1-(4-(5-(1,1-difluoro-2-(2- (trifluoromethyl)pyrimidin-4-ylamino)ethyl)-2- methylpyrimidin-4-yl)piperidin-1-yl)-2-(2,6- difluorophenyl)ethanone





N20


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4-(5-(1,1-difluoro-2-(4-(trifluoromethyl)pyrimidin- 2-ylamino)ethyl)-2-methylpyrimidin-4-yl)-N-(2,6- difluorophenyl)piperidine-1-carboxamide





N21


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1-(4-(5-(1,1-difluoro-2-(4- (trifluoromethyl)pyrimidin-2-ylamino)ethyl)-2- methylpyrimidin-4-yl)piperidin-1-yl)-2-(2,6- difluorophenyl)ethanone





N22


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N-(2,6-difluorophenyl)-4-(5-(1-fluoro-2-(6- (trifluoromethyl)pyridin-2-yloxy)ethyl)-2- methylpyrimidin-4-yl)piperidine-1-carboxamide





N23


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4-(5-(1-amino-2-(6-(trifluoromethyl)pyridin-2- yloxy)ethyl)-2-methylpyrimidin-4-yl)-N-(2,6- difluorophenyl)piperidine-1-carboxamide





N24


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4-(2-amino-5-(1-amino-2-(6- (trifluoromethyl)pyridin-2-yloxy)ethyl)pyrimidin-4- yl)-N-(2,6-difluorophenyl)piperidine-1-carboxamide





N25


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4-(5-(1-amino-2-(2-(trifluoromethyl)pyrimidin-4- yloxy)ethyl)-2-methylpyrimidin-4-yl)-N-(2,6- difluorophenyl)piperidine-1-carboxamide





N26


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N-(2,6-difluorophenyl)-4-(5-(1-(hydroxyimino)-2- (6-(trifluoromethyl)pyridin-2-yloxy)ethyl)-2- methylpyrimidin-4-yl)piperidine-1-carboxamide





N27


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4-(2-amino-5-(1-(methylamino)-2-(6- (trifluoromethyl)pyridin-2-yloxy)ethyl)pyrimidin-4- yl)-N-(2,6-difluorophenyl)piperidine-1-carboxamide





N28


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4-(5-(1-(1-acetylpiperidin-4-ylamino)-2-(6- (trifluoromethyl)pyridin-2-yloxy)ethyl)-2- methylpyrimidin-4-yl)-N-(2,6- difluorophenyl)piperidine-1-carboxamide





N29


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2-fluorophenyl 4-(2-amino-5-(1-amino-2-(6- (trifluoromethyl)pyridin-2-yloxy)ethyl)pyrimidin-4- yl)piperidine-1-carboxylate





N30


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N-(2,6-difluorophenyl)-4-(5-(2,4-dihydroxy-1-(6- (trifluoromethyl)pyridin-2-yloxy)butan-2-yl)-2- methylpyrimidin-4-yl)piperidine-1-carboxamide





N31


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4-(5-(4-amino-2-hydroxy-1-(6- (trifluoromethyl)pyridin-2-yloxy)butan-2-yl)-2- methylpyrimidin-4-yl)-N-(2,6- difluorophenyl)piperidine-1-carboxamide





N32


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N-(2,6-difluorophenyl)-4-(5-(1,2-dihydroxy-3-(6- (trifluoromethyl)pyridin-2-yloxy)propan-2-yl)-2- methylpyrimidin-4-yl)piperidine-1-carboxamide





N33


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4-(5-(1-azido-2-hydroxy-3-(6- (trifluoromethyl)pyridin-2-yloxy)propan-2-yl)-2- methylpyrimidin-4-yl)-N-(2,6- difluorophenyl)piperidine-1-carboxamide





N34


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4-(5-(1-amino-2-hydroxy-3-(6- (trifluoromethyl)pyridin-2-yloxy)propan-2-yl)-2- methylpyrimidin-4-yl)-N-(2,6- difluorophenyl)piperidine-1-carboxamide





N35


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1-(4-(5-(1-amino-2-hydroxy-3-(6- (trifluoromethyl)pyridin-2-yloxy)propan-2-yl)-2- methylpyrimidin-4-yl)piperidin-1-yl)-2-(2,6- difluorophenyl)ethanone





N36


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N-(2,6-difluorophenyl)-4-(5-(1-(3-ethylureido)-2- hydroxy-3-(6-(trifluoromethyl)pyridin-2- yloxy)propan-2-yl)-2-methylpyrimidin-4- yl)piperidine-1-carboxamide





N37


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4-(5-(1-acetamido-2-hydroxy-3-(6- (trifluoromethyl)pyridin-2-yloxy)propan-2-yl)-2- methylpyrimidin-4-yl)-N-(2,6- difluorophenyl)piperidine-1-carboxamide





N38


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4-(5-(1-(2-acetamidoethylamino)-2-hydroxy-3-(6- (trifluoromethyl)pyridin-2-yloxy)propan-2-yl)-2- methylpyrimidin-4-yl)-N-(2,6- difluorophenyl)piperidine-1-carboxamide





N39


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4-(5-(1-(4-acetylpiperazin-1-yl)-2-hydroxy-3-(6- (trifluoromethyl)pyridin-2-yloxy)propan-2-yl)-2- methylpyrimidin-4-yl)-N-(2,6- difluorophenyl)piperidine-1-carboxamide





N40


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4-(5-(1-(1-acetylpyrrolidin-3-ylamino)-2-hydroxy-3- (6-(trifluoromethyl)pyridin-2-yloxy)propan-2-yl)-2- methylpyrimidin-4-yl)-N-(2,6- difluorophenyl)piperidine-1-carboxamide





N41


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4-(5-(1-(3-acetamidopropanamido)-2-hydroxy-3-(6- (trifluoromethyl)pyridin-2-yloxy)propan-2-yl)-2- methylpyrimidin-4-yl)-N-(2,6- difluorophenyl)piperidine-1-carboxamide





N42


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N-(2,6-difluorophenyl)-4-(5-(2-hydroxy-1-(3- hydroxypropanamido)-3-(6-(trifluoromethyl)pyridin- 2-yloxy)propan-2-yl)-2-methylpyrimidin-4- yl)piperidine-1-carboxamide





N43


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2-fluorophenyl 4-(5-(1-acetamido-2-hydroxy-3-(6- (trifluoromethyl)pyridin-2-yloxy)propan-2-yl)-2- methylpyrimidin-4-yl)piperidine-1-carboxylate





N44


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2-(4-(1-(2,6-difluorophenylcarbamoyl)piperidin-4- yl)-2-methylpyrimidin-5-yl)-2-hydroxy-3-(6- (trifluoromethyl)pyridin-2-yloxy)propanoic acid





N45


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N-(2,6-difluorophenyl)-4-(5-(2-hydroxy-1- (methylamino)-1-oxo-3-(6-(trifluoromethyl)pyridin- 2-yloxy)propan-2-yl)-2-methylpyrimidin-4- yl)piperidine-1-carboxamide





N46


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4-fluorophenyl 4-(5-(1-acetamido-2-hydroxy-3-(6- (trifluoromethyl)pyridin-2-yloxy)propan-2-yl)-2- methylpyrimidin-4-yl)piperidine-1-carboxylate





N47


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2,6-difluorophenyl 4-(5-(1-acetamido-2-hydroxy-3- (6-(trifluoromethyl)pyridin-2-yloxy)propan-2-yl)-2- methylpyrimidin-4-yl)piperidine-1-carboxylate





N48


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4-(5-(1-amino-1-cyano-2-(6- (trifluoromethyl)pyridin-2-yloxy)ethyl)-2- methylpyrimidin-4-yl)-N-(2,6- difluorophenyl)piperidine-1-carboxamide





N49


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4-(5-(1,2-diamino-1-oxo-3-(6- (trifluoromethyl)pyridin-2-yloxy)propan-2-yl)-2- methylpyrimidin-4-yl)-N-(2,6- difluorophenyl)piperidine-1-carboxamide





N50


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5-(4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4- yl)-2-methylpyrimidin-5-yl)-5-methyl-3-(2- (trifluoromethyl)pyrimidin-4-yl)oxazolidin-2-one





N51


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N-(2,6-difluorophenyl)-4-(2-methyl-5-(2-((6- (trifluoromethyl)pyridin-2-yloxy)methyl)oxetan-2- yl)pyrimidin-4-yl)piperidine-1-carboxamide





N52


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N-(2,6-difluorophenyl)-4-(2-methyl-5-(2-oxo-5-((6- (trifluoromethyl)pyridin-2-yloxy)methyl)oxazolidin- 5-yl)pyrimidin-4-yl)piperidine-1-carboxamide









The compounds disclosed herein can be made using procedures familiar to the person of ordinary skill in the art and as described herein. For example, compounds of structural formula (I) can be prepared according to Schemes 1-50, below, or analogous synthetic schemes:




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Additional schemes are provided in the Examples, below.


One of skill in the art can adapt the reaction sequences of Schemes 1-50 and of the Examples to fit the desired target molecule. For example, use of a 2-ethylpyrimidine will result in compounds in which R1 is ethyl, instead of methyl as in many of the example compounds. Similarly, while the schemes generally depict the -(“B” ring system)-(Rb)y moiety as ortho-disubstituted phenyl, the person of skill will appreciate that use of different starting materials will provide different rings and/or different patterns of substitution. Of course, in certain situations one of skill in the art will use different reagents to affect one or more of the individual steps or to use protected versions of certain of the substituents. Additionally, one skilled in the art would recognize that compounds of structural formula (I) can be synthesized using different routes altogether.


The compounds of the present invention can be provided in a number of stereoisomeric forms. Accordingly, another aspect of the invention is a stereoisomeric form of a compound as described herein. For example, a compound of the present invention can be provided in racemic form. In other embodiments, a compound of the present invention is provided in scalemic form, or in a stereoisomerically pure form (e.g., substantially as a single enantiomer).


Another aspect of the invention is an N-oxide of a compound or stereoisomeric form as described herein.


Another aspect of the invention is a pharmaceutically acceptable salt of a compound, stereoisomeric form, or N-oxide as described herein. As used herein, the phrase “pharmaceutically acceptable salt” refers to both pharmaceutically acceptable acid and base addition salts. Such pharmaceutically acceptable salts include salts of acids such as hydrochloric, phosphoric, hydrobromic, sulfuric, sulfinic, formic, trifluoroacetic, toluenesulfonic, methanesulfonic, nitric, benzoic, citric, tartaric, maleic, hydroiodic, alkanoic such as acetic, HOOC—(CH2)n—COOH where n is 0-4, and the like. Non-toxic pharmaceutical base addition salts include salts of bases such as sodium, potassium, calcium, ammonium, and the like. Those skilled in the art will recognize a wide variety of non-toxic pharmaceutically acceptable addition salts.


Another aspect of the invention is a solvate or hydrate of a compound, stereoisomeric form, N-oxide or pharmaceutically acceptable salt as described herein. The person of skill in the art can determine whether a particular compound will form a solvate or a hydrate.


Another aspect of the invention is a pharmaceutical composition including a compound, stereoisomeric form, N-oxide, pharmaceutical salt, solvate or hydrate as described herein The pharmaceutical compositions described herein generally comprise a combination of a compound described herein and a pharmaceutically acceptable carrier, diluent, or excipient. Such compositions are substantially free of non-pharmaceutically acceptable components, i.e., contain amounts of non-pharmaceutically acceptable components lower than permitted by U.S. regulatory requirements at the time of filing this application. In some embodiments of this aspect, if the compound is dissolved or suspended in water, the composition further optionally comprises an additional pharmaceutically acceptable carrier, diluent, or excipient. In other embodiments, the pharmaceutical compositions described herein are solid pharmaceutical compositions (e.g., tablet, capsules, etc.).


These compositions can be prepared in a manner well known in the pharmaceutical art, and can be administered by a variety of routes, depending upon whether local or systemic treatment is desired and upon the area to be treated. Administration may be topical (including ophthalmic and to mucous membranes including intranasal, vaginal and rectal delivery), pulmonary (e.g., by inhalation or insufflation of powders or aerosols, including by nebulizer; intratracheal, intranasal, epidermal and transdermal), ocular, oral or parenteral. Methods for ocular delivery can include topical administration (eye drops), subconjunctival, periocular or intravitreal injection or introduction by balloon catheter or ophthalmic inserts surgically placed in the conjunctival sac. Parenteral administration includes intravenous, intraarterial, subcutaneous, intraperitoneal or intramuscular injection or infusion; or intracranial, e.g., intrathecal or intraventricular, administration. Parenteral administration can be in the form of a single bolus dose, or may be, for example, by a continuous perfusion pump. Pharmaceutical compositions and formulations for topical administration may include transdermal patches, ointments, lotions, creams, gels, drops, suppositories, sprays, liquids and powders. Conventional pharmaceutical carriers, aqueous, powder or oily bases, thickeners and the like may be necessary or desirable.


Also, pharmaceutical compositions can contain, as the active ingredient, one or more of the compounds described herein above in combination with one or more pharmaceutically acceptable carriers. In making the compositions described herein, the active ingredient is typically mixed with an excipient, diluted by an excipient or enclosed within such a carrier in the form of, for example, a capsule, sachet, paper, or other container. When the excipient serves as a diluent, it can be a solid, semi-solid, or liquid material, which acts as a vehicle, carrier or medium for the active ingredient. Thus, the compositions can be in the form of tablets, pills, powders, lozenges, sachets, cachets, elixirs, suspensions, emulsions, solutions, syrups, aerosols (as a solid or in a liquid medium), ointments containing, for example, up to 10% by weight of the active compound, soft and hard gelatin capsules, suppositories, sterile injectable solutions, and sterile packaged powders.


In preparing a formulation, the active compound can be milled to provide the appropriate particle size prior to combining with the other ingredients. If the active compound is substantially insoluble, it can be milled to a particle size of less than 200 mesh. If the active compound is substantially water soluble, the particle size can be adjusted by milling to provide a substantially uniform distribution in the formulation, e.g. about 40 mesh.


Some examples of suitable excipients include lactose, dextrose, sucrose, sorbitol, mannitol, starches, gum acacia, calcium phosphate, alginates, tragacanth, gelatin, calcium silicate, microcrystalline cellulose, polyvinylpyrrolidone, cellulose, water, syrup, and methyl cellulose. The formulations can additionally include: lubricating agents such as talc, magnesium stearate, and mineral oil; wetting agents; emulsifying and suspending agents; preserving agents such as methyl- and propylhydroxy-benzoates; sweetening agents; and flavoring agents. The compositions described herein can be formulated so as to provide quick, sustained or delayed release of the active ingredient after administration to the subject by employing procedures known in the art.


The active compound can be effective over a wide dosage range and is generally administered in a pharmaceutically effective amount. It will be understood, however, that the amount of the compound actually administered will usually be determined by a physician, according to the relevant circumstances, including the condition to be treated, the chosen route of administration, the actual compound administered, the age, weight, and response of the individual subject, the severity of the subject's symptoms, and the like.


For preparing solid compositions such as tablets, the principal active ingredient is mixed with a pharmaceutical excipient to form a solid preformulation composition containing a homogeneous mixture of a compound described herein. When referring to these preformulation compositions as homogeneous, the active ingredient is typically dispersed evenly throughout the composition so that the composition can be readily subdivided into equally effective unit dosage forms such as tablets, pills and capsules. This solid preformulation is then subdivided into unit dosage forms of the type described above containing from, for example, 0.1 to about 500 mg of the active ingredient of a compound described herein.


The tablets or pills can be coated or otherwise compounded to provide a dosage form affording the advantage of prolonged action. For example, the tablet or pill can comprise an inner dosage and an outer dosage component, the latter being in the form of an envelope over the former. The two components can be separated by an enteric layer which serves to resist disintegration in the stomach and permit the inner component to pass intact into the duodenum or to be delayed in release. A variety of materials can be used for such enteric layers or coatings, such materials including a number of polymeric acids and mixtures of polymeric acids with such materials as shellac, cetyl alcohol, and cellulose acetate.


The liquid forms in which the compounds and compositions can be incorporated for administration orally or by injection include aqueous solutions, suitably flavored syrups, aqueous or oil suspensions, and flavored emulsions with edible oils such as cottonseed oil, sesame oil, coconut oil, or peanut oil, as well as elixirs and similar pharmaceutical vehicles.


Compositions for inhalation or insufflation include solutions and suspensions in pharmaceutically acceptable, aqueous or organic solvents, or mixtures thereof, and powders. The liquid or solid compositions may contain suitable pharmaceutically acceptable excipients as described supra. In some embodiments, the compositions are administered by the oral or nasal respiratory route for local or systemic effect. Compositions in can be nebulized by use of inert gases. Nebulized solutions may be breathed directly from the nebulizing device or the nebulizing device can be attached to a face masks tent, or intermittent positive pressure breathing machine. Solution, suspension, or powder compositions can be administered orally or nasally from devices which deliver the formulation in an appropriate manner.


The amount of compound or composition administered to a subject will vary depending upon what is being administered, the purpose of the administration, such as prophylaxis or therapy, the state of the subject, the manner of administration, and the like. In therapeutic applications, compositions can be administered to a subject already suffering from a disease in an amount sufficient to cure or at least partially arrest the symptoms of the disease and its complications. Effective doses will depend on the disease condition being treated as well as by the judgment of the attending clinician depending upon factors such as the severity of the disease, the age, weight and general condition of the subject, and the like.


The compositions administered to a subject can be in the form of pharmaceutical compositions described above. These compositions can be sterilized by conventional sterilization techniques, or may be sterile filtered. Aqueous solutions can be packaged for use as is, or lyophilized, the lyophilized preparation being combined with a sterile aqueous carrier prior to administration. The pH of the compound preparations typically will be between 3 and 11, more preferably from 5 to 9 and most preferably from 7 to 8. It will be understood that use of certain of the foregoing excipients, carriers, or stabilizers will result in the formation of pharmaceutical salts.


The therapeutic dosage of the compounds can vary according to, for example, the particular use for which the treatment is made, the manner of administration of the compound, the health and condition of the subject, and the judgment of the prescribing physician. The proportion or concentration of a compound described herein in a pharmaceutical composition can vary depending upon a number of factors including dosage, chemical characteristics (e.g., hydrophobicity), and the route of administration. For example, the compounds described herein can be provided in an aqueous physiological buffer solution containing about 0.1 to about 10% w/v of the compound for parenteral administration. Some typical dose ranges are from about 1 g/kg to about 1 g/kg of body weight per day. In some embodiments, the dose range is from about 0.01 mg/kg to about 100 mg/kg of body weight per day. The dosage is likely to depend on such variables as the type and extent of progression of the disease or disorder, the overall health status of the particular subject, the relative biological efficacy of the compound selected, formulation of the excipient, and its route of administration. Effective doses can be extrapolated from dose-response curves derived from in vitro or animal model test systems.


The compounds of the present invention are useful to prevent, diagnose, and treat various medical disorders in humans or animals. The compounds are used to inhibit or reduce one or more activities associated with RORγ receptors, relative to RORγ receptors in the absence of the same compounds. Thus, in one aspect of the invention, a method for treating a disease or disorder selected from an autoimmune disease or disorder, asthma, an allergic disease or disorder, a metabolic disease or disorder, and cancer in a subject comprises administering to the subject a therapeutically effective amount of compound according to formula (I), stereoisomeric form, N-oxide, pharmaceutically acceptable salt, solvate, hydrate or pharmaceutical composition as described herein. See, e.g., L. A. Solt et al., “Action of RORs and their ligands in (patho)physiology,” Trends Endocrinol Metab., preprint available online Jul. 11, 2012 at http://www.sciencedirect.com/science/article/pii/S1043276012000926; M. S. Maddur et al., “Th17 cells: biology, pathogenesis of autoimmune and inflammatory diseases, and therapeutic strategies,” Am. J. Pathol. 2012 July; 181(1):8-18; and A. M. Jetten, “Retinoid-related orphan receptors (RORs): critical roles in development, immunity, circadian rhythm, and cellular metabolism,” Nucl. Recept. Signal. 2009; 7:e003, each of which is hereby incorporated herein by reference in its entirety, as well as the references discussed in the Background section. In certain embodiments, the autoimmune disease or disorder is selected from rheumatoid arthritis, ankylosing spondylitis, psoriasis and psoriatic arthritis, multiple sclerosis, inflammatory bowel diseases and lupus. In certain embodiments, the allergic disease or disorder is selected from allergic rhinitis and dermatitis. In certain embodiments, the metabolic disease or disorder is selected from obesity, obesity-induced insulin resistance and type II diabetes.


In certain embodiments, the disease or disorder is rheumatoid arthritis. See, e.g., L. A. Solt et al., referenced above, as well as the references discussed in the Background section.


In other embodiments, the disease or disorder is multiple sclerosis. See, e.g., L. Codarri et al., “RORγt drives production of the cytokine GM-CSF in helper T cells, which is essential for the effector phase of autoimmune neuroinflammation,” Nat. Immunol., 2011 June; 12(6):560-7, which is hereby incorporated herein by reference in its entirety, as well as the references discussed in the Background section.


In other embodiments, the disease or disorder is ankylosing spondylitis. See, e.g., E. Toussirot, “The IL23/Th17 pathway as a therapeutic target in chronic inflammatory diseases,” Inflamm. Allergy Drug Targets, 2012 April; 11(2):159-68, which is hereby incorporated herein by reference in its entirety, as well as the references discussed in the Background section.


In other embodiments, the disease or disorder is inflammatory bowel disease. See, e.g., M. Leppkes et al., “RORgamma-expressing Th17 cells induce murine chronic intestinal inflammation via redundant effects of IL-17A and IL-17F,” Gastroenterology, 2009 January; 136(1):257-67, which is hereby incorporated herein by reference in its entirety, as well as the references discussed in the Background section.


In other embodiments, the disease or disorder is lupus. See, e.g., K. Yoh et al., “Overexpression of RORγt under control of the CD2 promoter induces polyclonal plasmacytosis and autoantibody production in transgenic mice,” Eur. J. Immunol., 2012 August; 42(8):1999-2009, which is hereby incorporated herein by reference in its entirety, as well as the references discussed in the Background section.


In other embodiments, the disease or disorder is psoriasis. See, e.g., S. Pantelyushin et al., “RORγt+ innate lymphocytes and γδ T cells initiate psoriasiform plaque formation in mice,” J. Clin. Invest., 2012 Jun. 1; 122(6):2252-6; and S. P. Raychaudhuri, “Role of IL-17 in Psoriasis and Psoriatic Arthritis,” Clin. Rev. Allergy Immunol., preprint available online Feb. 24, 2012 at http://rd.springer.com/article/10.1007/s12016-012-8307-1 (PubMed PMID: 22362575), each of which is hereby incorporated herein by reference in its entirety, as well as the references discussed in the Background section.


In other embodiments, the disease or disorder is psoriatic arthritis. See, e.g., S. P. Raychaudhuri, referenced above, as well as the references discussed in the Background section.


In other embodiments, the disease or disorder is graft-vs.-host disease (GVHD). Y. Yu et al., “Prevention of GVHD while sparing GVL effect by targeting Th1 and Th17 transcription factorT-bet and RORγt in mice,” Blood, 2011 Nov. 3; 118(18):5011-20, which is hereby incorporated herein by reference in its entirety, as well as the references discussed in the Background section.


In other embodiments, the disease or disorder is autoimmune uveitis. See, e.g., R. Horai et al., “Cytokines in autoimmune uveitis,” J. Interferon Cytokine Res., 2011 October; 31(10):733-44, which is hereby incorporated herein by reference in its entirety, as well as the references discussed in the Background section.


In other embodiments, the disease or disorder is obesity and/or insulin resistance. See, e.g., B. Meissburger et al., “Adipogenesis and insulin sensitivity in obesity are regulated by retinoid-related orphan receptor gamma,” EMBO Mol. Med., 2011 November; 3(11):637-51, which is hereby incorporated herein by reference in its entirety, as well as the references discussed in the Background section.


In other embodiments, the disease or disorder is melanoma. See, e.g., Purwar R, et al. Robust tumor immunity to melanoma mediated by interleukin-9-producing T cells. Nat. Med., 2012 July: 18:1248-53, which is hereby incorporated herein by reference in its entirety, as well as the references discussed in the Background section.


In certain aspects, the medical disorder being diagnosed, treated, or prevented by use of the presently disclosed compounds can be, for example, an autoimmune disorder. In other embodiments, the disorder being diagnosed, treated or prevented by use of the presently disclosed compounds can be an inflammatory disorder. For example, in certain embodiments, the disorder is selected from arthritis, diabetes, multiple sclerosis, uveitis, rheumatoid arthritis, psoriasis, asthma, bronchitis, allergic rhinitis, chronic obstructive pulmonary disease, atherosclerosis, H. pylori infection and inflammatory bowel disease. In other embodiments, the disorder is selected from Crohn's disease, ulcerative colitis, sprue and food allergies. In other embodiments, the disorder is experimental autoimmune encephalomyelitis, imiquimod-induced psoriasis, colitis or allergic airway disease.


As used herein, the phrase “therapeutically effective amount” refers to the amount of active compound or pharmaceutical agent that elicits the biological or medicinal response that is being sought in a tissue, system, animal, individual or human by a researcher, veterinarian, medical doctor or other clinician.


In certain embodiments, a therapeutically effective amount can be an amount suitable for (1) preventing the disease; for example, preventing a disease, condition or disorder in an individual who may be predisposed to the disease, condition or disorder but does not yet experience or display the pathology or symptomatology of the disease; (2) inhibiting the disease; for example, inhibiting a disease, condition or disorder in an individual who is experiencing or displaying the pathology or symptomatology of the disease, condition or disorder; or (3) ameliorating the disease; for example, ameliorating a disease, condition or disorder in an individual who is experiencing or displaying the pathology or symptomatology of the disease, condition or disorder (i.e., reversing the pathology and/or symptomatology) such as decreasing the severity of disease.


As used here, the terms “treatment” and “treating” means (i) ameliorating the referenced disease state, for example, ameliorating a disease, condition or disorder in an individual who is experiencing or displaying the pathology or symptomatology of the disease, condition or disorder (i.e., reversing or improving the pathology and/or symptomatology) such as decreasing the severity of disease; (ii) eliciting the biological or medicinal response that is being sought in a tissue, system, animal, individual or human by a researcher, veterinarian, medical doctor or other clinician; or (iii) inhibiting the referenced disease state; for example, inhibiting a disease, condition or disorder in an individual who is experiencing or displaying the pathology or symptomatology of the disease, condition or disorder.


EXAMPLES
Example 1
Syntheses of Example Compounds
Compound A1—4-(1-(2-(2,6-Difluorophenyl)acetyl)piperidin-4-yl)-N-(3,5-dimethylbenzyl)-2-methylpyrimidine-5-carboxamide
A1.1: tert-Butyl 4-(3-(dimethylamino)-2-(ethoxycarbonyl)acryloyl)piperidine-1-carboxylate

tert-Butyl 4-(3-ethoxy-3-oxopropanoyl)piperidine-1-carboxylate (40 g, 133 mmol) and dimethylformamide dimethylacetal (DMFDMA) (19 g, 160 mmol) were dissolved in toluene (40 mL). The solution was stirred under reflux for 5 h and cooled to room temperature. The solution was concentrated and used as is in the next reaction.


A1.2: Ethyl 4-(1-(tert-butoxycarbonyl)piperidin-4-yl)-2-methylpyrimidine-5-carboxylate

To a suspension of acetamidine hydrochloride (15.1 g, 160 mmol) in EtOH (100 mL) was added EtONa (11 g, 160 mmol). The resulting mixture was stirred for 15 min at room temperature. Crude enamine A1.1 was dissolved in EtOH (100 mL) and added to the acetamidine hydrochloride mixture. The mixture was heated to 70° C. with stirring for 2 h. The solvent was removed under reduced pressure. The residue was stirred in EtOAc (500 mL) and filtered. Concentration of the filtrate gave the crude product, which was further purified by flash column chromatography.


A1.3: Ethyl 2-methyl-4-(piperidin-4-yl)pyrimidine-5-carboxylate hydrochloride

To a solution of A1.2 (5 g, 13.7 mmol) in EtOH (20 mL) was added 4N HCl in dioxane (12 mL). The resulting solution was stirred for 12 h at room temperature. Ether (100 mL) was added with stirring. The solid was filtered and dried under vacuum. The crude product was used in the next step without further purification.


A1.4: Ethyl 4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-yl)-2-methylpyrimidine-5-carboxylate

A1.3 was mixed with 2,6-difluorophenylacetic acid (3.13 g, 18 mmol), hydroxybenzotriazole (HOBt) (2.43 g, 18 mmol) and N,N-diisopropylethylamine (DIEA) (9 g, 70 mmol) in tetrahydrofuran (THF) (50 mL). To this solution was added ethyl(dimethylaminopropyl) carbodiimide (EDC) (3.43 g, 18 mmol). The resulting reaction mixture was stirred at room temperature for 5 h then diluted with aq. sat. NaHCO3. The resulting mixture was extracted with EtOAc and the organic mixture was dried over sodium sulfate, filtered, and concentrated.


A1.5: 4-(1-(2-(2,6-Difluorophenyl)acetyl)piperidin-4-yl)-2-methylpyrimidine-5-carboxylic acid

Crude A1.4 was stirred with NaOH (1.7 g, 42 mmol) in MeOH/water (40 mL/20 mL) at room temperature for 10 h. The solution was concentrated and the solid was dissolved in water (40 mL) and acidified with conc. HCl. The precipitated product was filtered and dried.


Compound A1

A1.5 (150 mg, 0.39 mmol) was mixed with 3,5-dimethylbenzylamine (62 mg, 0.45 mmol) and DIEA (0.5 mL) in THF (3 mL). To this solution was added 2-(1H-7-azabenzotriazol-1-yl)-1,1,3,3-tetramethyluronoium hexafluorphosphate (HATU) (217 mg, 0.58 mmol). The resulting reaction mixture was stirred at room temperature for 2 h then diluted with aq. sat. NaHCO3. The mixture was extracted with CH2Cl2, dried over sodium sulfate, filtered, and concentrated. The crude mixture was purified by preparative HPLC to give Compound A1. 1H-NMR (400 MHz, DMSO-d6): δ 9.13 (t, 1H), 8.64 (s, 1H), 7.36 (m, 1H), 7.08 (t, 2H), 6.96 (s, 2H), 6.91 (s, 1H), 4.40 (m, 3H), 4.16 (d, 1H), 3.80 (d, 1H), 3.76 (d, 1H), 3.26 (m, 1H), 3.06 (m, 1H), 2.63 (s, 3H), 2.56 (m, 1H), 2.26 (s, 6H), 1.72 (m, 4H). MS (EI) for C28H30F2N4O2. found: 493.0 (MH+). Analytical HPLC, ret. time=13.5 min, 93% purity.


Compounds A2-A79

Compounds A2 to A79 were prepared from methods analogous to those used to prepare Compound A1 utilizing appropriate reagent replacements at various steps.

















HPLC





Retention
MS




Time
Reported


Cpd
Chemical Name
(min)
(MH+)


















A2
N-(3,4-dichlorobenzyl)-4-(1-(2-(2,6-
4.92*
533.1



difluorophenyl)acetyl)piperidin-4-yl)-2-



methylpyrimidine-5-carboxamide


A3
4-(1-(2-(2-chloro-6-fluorophenyl)acetyl)piperidin-4-yl)-
18.16
509.2



N-(3,5-dimethylbenzyl)-2-methylpyrimidine-5-



carboxamide


A4
N-(3,5-dimethylbenzyl)-4-(1-(2-(2-fluoro-6-
18.88
543.1



(trifluoromethyl)phenyl)acetyl)piperidin-4-yl)-2-



methylpyrimidine-5-carboxamide


A5
N-(3,5-dimethylbenzyl)-2-methyl-4-(1-(2-(2-
18.56
525.2



(trifluoromethyl)phenyl)acetyl)piperidin-4-



yl)pyrimidine-5-carboxamide


A6
4-(1-(2-(2-chloro-6-fluorophenyl)acetyl)piperidin-4-yl)-
14.50
535.1



N-(3,4-dichlorobenzyl)pyrimidine-5-carboxamide


A7
4-(1-(2-(2-chlorophenyl)acetyl)piperidin-4-yl)-N-(3,5-
17.79
491.2



dimethylbenzyl)-2-methylpyrimidine-5-carboxamide


A8
4-(1-(2-chloro-6-fluorobenzoyl)piperidin-4-yl)-N-(3,5-
13.48
495.2



dimethylbenzyl)-2-methylpyrimidine-5-carboxamide


A9
N-(3,5-dimethylbenzyl)-2-methyl-4-(1-(2-(2-
18.99
541.2



(trifluoromethoxy)phenyl)acetyl)piperidin-4-



yl)pyrimidine-5-carboxamide


A10
N-(3,5-dimethylbenzyl)-4-(1-(2-(2-
16.72
487.2



methoxyphenyl)acetyl)piperidin-4-yl)-2-



methylpyrimidine-5-carboxamide


A11
N-(3,5-dimethylbenzyl)-2-methyl-4-(1-(2-(o-
17.34
471.2



tolyl)acetyl)piperidin-4-yl)pyrimidine-5-carboxamide


A12
N-(3,5-dimethylbenzyl)-4-(1-(2-(2-
16.81
475.2



fluorophenyl)acetyl)piperidin-4-yl)-2-methylpyrimidine-



5-carboxamide


A13
N-(3,4-dichlorobenzyl)-2-methyl-4-(1-(2-(2,3,6-
5.00*
551.1



trifluorophenyl)acetyl)piperidin-4-yl)pyrimidine-5-



carboxamide


A14
4-(1-(2-(2,5-difluorophenyl)acetyl)piperidin-4-yl)-N-
17.16
493.2



(3,5-dimethylbenzyl)-2-methylpyrimidine-5-



carboxamide


A15
N-(3,5-dimethylbenzyl)-2-methyl-4-(1-(2-(2-
16.63
502.2



nitrophenyl)acetyl)piperidin-4-yl)pyrimidine-5-



carboxamide


A16
(R)-N-(3,5-dimethylbenzyl)-2-methyl-4-(1-(2-
17.59
471.2



phenylpropanoyl)piperidin-4-yl)pyrimidine-5-



carboxamide


A17
4-(1-(2-(2,4-difluorophenyl)acetyl)piperidin-4-yl)-N-
17.23
493.2



(3,5-dimethylbenzyl)-2-methylpyrimidine-5-



carboxamide


A18
4-(1-(2-(2,3-difluorophenyl)acetyl)piperidin-4-yl)-N-
17.21
493.2



(3,5-dimethylbenzyl)-2-methylpyrimidine-5-



carboxamide


A19
N-(3,5-dimethylbenzyl)-2-methyl-4-(1-(2-(naphthalen-1-
18.63
507.2



yl)acetyl)piperidin-4-yl)pyrimidine-5-carboxamide


A20
4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-yl)-2-
19.99**
495.2



methyl-N-(2-phenoxyethyl)pyrimidine-5-carboxamide


A21
N-(3,4-dichlorobenzyl)-4-(1-(2-(2,6-
5.24*
587.0



difluorophenyl)acetyl)piperidin-4-yl)-2-



(trifluoromethyl)pyrimidine-5-carboxamide


A22
N-(3,5-dimethylbenzyl)-4-(1-(2-(3-
16.68
475.2



fluorophenyl)acetyl)piperidin-4-yl)-2-methylpyrimidine-



5-carboxamide


A23
N-(3,5-dimethylbenzyl)-4-(1-(2-fluorobenzoyl)piperidin-
16.13
461.2



4-yl)-2-methylpyrimidine-5-carboxamide


A24
4-(1-(2-chlorobenzoyl)piperidin-4-yl)-N-(3,5-
16.64
477.2



dimethylbenzyl)-2-methylpyrimidine-5-carboxamide


A25
N-(3,5-dimethylbenzyl)-2-methyl-4-(1-(2-
16.20
457.2



phenylacetyl)piperidin-4-yl)pyrimidine-5-carboxamide


A26
(S)-N-(3,5-dimethylbenzyl)-2-methyl-4-(1-(2-
17.66
471.2



phenylpropanoyl)piperidin-4-yl)pyrimidine-5-



carboxamide


A27
4-(1-(2-(3,5-difluorophenyl)acetyl)piperidin-4-yl)-N-
17.33
493.2



(3,5-dimethylbenzyl)-2-methylpyrimidine-5-



carboxamide


A28
N-(3,4-dichlorobenzyl)-4-(1-(2-(2,6-
5.16*
561.1



difluorophenyl)acetyl)piperidin-4-yl)-2-



isopropylpyrimidine-5-carboxamide


A29
N-(3,5-dimethylbenzyl)-4-(1-(2-(4-
16.75
475.2



fluorophenyl)acetyl)piperidin-4-yl)-2-methylpyrimidine-



5-carboxamide


A30
N-(3,5-dimethylbenzyl)-2-methyl-4-(1-(2-(m-
17.43
471.2



tolyl)acetyl)piperidin-4-yl)pyrimidine-5-carboxamide


A31
N-(3,5-dimethylbenzyl)-4-(1-(1-(2-
19.81
529.3



fluorophenyl)cyclopentanecarbonyl)piperidin-4-yl)-2-



methylpyrimidine-5-carboxamide


A32
N-(3,5-dimethylbenzyl)-2-methyl-4-(1-(1-
17.19
483.2



phenylcyclopropanecarbonyl)piperidin-4-yl)pyrimidine-



5-carboxamide


A33
4-(1-(3-chloropicolinoyl)piperidin-4-yl)-N-(3,5-
13.95
478.1



dimethylbenzyl)-2-methylpyrimidine-5-carboxamide


A34
4-(1-(2-(3,4-difluorophenyl)acetyl)piperidin-4-yl)-N-
17.16
493.2



(3,5-dimethylbenzyl)-2-methylpyrimidine-5-



carboxamide


A35
N-(3,5-dimethylbenzyl)-2-methyl-4-(1-(2-methyl-2-
18.50
485.3



phenylpropanoyl)piperidin-4-yl)pyrimidine-5-



carboxamide


A36
N-(3,4-dichlorobenzyl)-4-(1-(2-(2-
5.01*
543.1



fluorophenyl)acetyl)piperidin-4-yl)-2-



isopropylpyrimidine-5-carboxamide


A37
N-(3,4-dichlorobenzyl)-4-(1-(2-(2,6-
5.24*
595.9



difluorophenyl)acetyl)piperidin-4-yl)-2-



phenylpyrimidine-5-carboxamide


A38
N-(3,5-dimethylbenzyl)-2-methyl-4-(1-(2-(pyridin-2-
9.76
458.2



yl)acetyl)piperidin-4-yl)pyrimidine-5-carboxamide


A39
N-(3,5-dimethylbenzyl)-4-(1-(2-(3-
16.14
487.2



methoxyphenyl)acetyl)piperidin-4-yl)-2-



methylpyrimidine-5-carboxamide


A40
N-(3-chlorobenzyl)-4-(1-(2-(2,6-
4.44*
499.1



difluorophenyl)acetyl)piperidin-4-yl)-2-



methylpyrimidine-5-carboxamide


A41
N-(3-chloro-5-fluorobenzyl)-4-(1-(2-(2,6-
17.38
517.0



difluorophenyl)acetyl)piperidin-4-yl)-2-



methylpyrimidine-5-carboxamide


A42
N-(5-chloro-2-fluorobenzyl)-4-(1-(2-(2,6-
11.80
517.0



difluorophenyl)acetyl)piperidin-4-yl)-2-



methylpyrimidine-5-carboxamide


A43
2-cyclopropyl-4-(1-(2-(2,6-
4.07*
519.0



difluorophenyl)acetyl)piperidin-4-yl)-N-(3,5-



dimethylbenzyl)pyrimidine-5-carboxamide


A44
4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-yl)-2-
15.80
534.0



methyl-N-((6-(trifluoromethyl)pyridin-2-



yl)methyl)pyrimidine-5-carboxamide


A45
N-(3-chlorobenzyl)-2-cyclopropyl-4-(1-(2-(2,6-
4.41*
525.0



difluorophenyl)acetyl)piperidin-4-yl)pyrimidine-5-



carboxamide


A46
4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-yl)-2-
17.44
533.0



methyl-N-(3-(trifluoromethyl)benzyl)pyrimidine-5-



carboxamide


A47
4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-yl)-2-
10.88
534.0



methyl-N-((2-(trifluoromethyl)pyridin-4-



yl)methyl)pyrimidine-5-carboxamide


A48
N-(3-chlorobenzyl)-4-(1-(2-(2,6-
4.30*
513.0



difluorophenyl)acetyl)piperidin-4-yl)-2-ethylpyrimidine-



5-carboxamide


A49
N-((2,6-dichloropyridin-4-yl)methyl)-4-(1-(2-(2,6-
16.20
534.1



difluorophenyl)acetyl)piperidin-4-yl)-2-



methylpyrimidine-5-carboxamide


A50
N-(3-cyanobenzyl)-4-(1-(2-(2,6-
14.47
490.0



difluorophenyl)acetyl)piperidin-4-yl)-2-



methylpyrimidine-5-carboxamide


A51
N-(3,5-dichlorobenzyl)-4-(1-(2-(2,6-
18.66
532.9



difluorophenyl)acetyl)piperidin-4-yl)-2-



methylpyrimidine-5-carboxamide


A52
N-((2-chloro-6-methoxypyridin-4-yl)methyl)-4-(1-(2-
12.14
530.0



(2,6-difluorophenyl)acetyl)piperidin-4-yl)-2-



methylpyrimidine-5-carboxamide


A53
4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-yl)-2-
17.95
549.0



methyl-N-(3-(trifluoromethoxy)benzyl)pyrimidine-5-



carboxamide


A54
N-(3-chloro-2-fluorobenzyl)-4-(1-(2-(2,6-
12.97
517.0



difluorophenyl)acetyl)piperidin-4-yl)-2-



methylpyrimidine-5-carboxamide


A55
N-((2-cyanopyridin-4-yl)methyl)-4-(1-(2-(2,6-
13.10
491.2



difluorophenyl)acetyl)piperidin-4-yl)-2-



methylpyrimidine-5-carboxamide


A56
N-((2-chloropyridin-4-yl)methyl)-4-(1-(2-(2,6-
13.51
500.1



difluorophenyl)acetyl)piperidin-4-yl)-2-



methylpyrimidine-5-carboxamide


A57
4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-yl)-N-
16.85
479.1



(3,5-dimethylbenzyl)pyrimidine-5-carboxamide


A58
4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-yl)-N-(3-
15.14
495.0



methoxybenzyl)-2-methylpyrimidine-5-carboxamide


A59
N-(4-chloro-2-methylbenzyl)-4-(1-(2-(2,6-
17.60
513.1



difluorophenyl)acetyl)piperidin-4-yl)-2-



methylpyrimidine-5-carboxamide


A60
4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-yl)-2-
4.36*
479.2



methyl-N-(3-methylbenzyl)pyrimidine-5-carboxamide


A61
4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-yl)-2,6-
14.332
548.0



dimethyl-N-((2-(trifluoromethyl)pyridin-4-



yl)methyl)pyrimidine-5-carboxamide


A62
N-(4-chlorobenzyl)-4-(1-(2-(2,6-
4.54*
499.1



difluorophenyl)acetyl)piperidin-4-yl)-2-



methylpyrimidine-5-carboxamide


A63
N-(3-chloro-2-methylbenzyl)-4-(1-(2-(2,6-
17.792
513.0



difluorophenyl)acetyl)piperidin-4-yl)-2-



methylpyrimidine-5-carboxamide


A64
4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-yl)-N-
4.41*
507.0



(3,5-dimethylbenzyl)-2-ethylpyrimidine-5-carboxamide


A65
N-(3,4-dichlorobenzyl)-4-(1-(2-(2,6-
4.94*
553.1



dichlorophenyl)acetyl)piperidin-4-yl)pyrimidine-5-



carboxamide


A66
4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-yl)-2-
14.87
534.0



methyl-N-((4-(trifluoromethyl)pyridin-2-



yl)methyl)pyrimidine-5-carboxamide


A67
4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-yl)-2-
15.16
549.0



methyl-N-((4-methyl-6-(trifluoromethyl)pyrimidin-2-



yl)methyl)pyrimidine-5-carboxamide


A68
N-(3,4-dichlorobenzyl)-4-(1-(2-(2,3,6-
4.94*
537.1



trifluorophenyl)acetyl)piperidin-4-yl)pyrimidine-5-



carboxamide


A69
N-benzyl-4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-
3.77*
465.0



yl)-2-methylpyrimidine-5-carboxamide


A70
4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-yl)-2-
9.32
480.2



methyl-N-((2-methylpyridin-4-yl)methyl)pyrimidine-5-



carboxamide


A71
N-((6-chloropyridin-3-yl)methyl)-4-(1-(2-(2,6-
13.66
500.1



difluorophenyl)acetyl)piperidin-4-yl)-2-



methylpyrimidine-5-carboxamide


A72
N-((2-chlorothiazol-5-yl)methyl)-4-(1-(2-(2,6-
14.22
505.9



difluorophenyl)acetyl)piperidin-4-yl)-2-



methylpyrimidine-5-carboxamide


A73
4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-yl)-N-
9.55
494.2



((2,6-dimethylpyridin-4-yl)methyl)-2-methylpyrimidine-



5-carboxamide


A74
4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-yl)-2-
14.98
534.1



methyl-N-((6-(trifluoromethyl)pyridin-3-



yl)methyl)pyrimidine-5-carboxamide


A75
methyl 2-(3-chlorophenyl)-2-(4-(l-(2-(2,6-
4.19*
557.0



difluorophenyl)acetyl)piperidin-4-yl)-2-



methylpyrimidine-5-carboxamido)acetate


A76
N-(1-(3-chlorophenyl)ethyl)-4-(1-(2-(2,6-
13.52
513.0



difluorophenyl)acetyl)piperidin-4-yl)-2-



methylpyrimidine-5-carboxamide


A77
4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-yl)-N-((2-
12.30
537.2



(ethylcarbamoyl)pyridin-4-yl)methyl)-2-



methylpyrimidine-5-carboxamide


A78
4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-yl)-N-
11.25
483.2



((1,5-dimethyl-1H-pyrazol-3-yl)methyl)-2-



methylpyrimidine-5-carboxamide


A79
4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-yl)-2-
11.14
481.0



methyl-N-((5-methylpyrazin-2-yl)methyl)pyrimidine-5-



carboxamide









HPLC Conditions Used to Determine Retention Times:



  • Unless otherwise noted: YMC C18, 5μ 150×4.6 mm column, gradient 10% to 90% MeCN/water, in the presence of 0.1% TFA, 25 min gradient time, 27 min total run time at 1.5 mL/min flow rate, λ=254 nM

  • * Phenomenex, Gemini, 50×4.6 mm, 5μ column, gradient 10% to 90% MeCN/water, in the presence of 0.1% TFA, 5 min gradient time, 6 min total run time at 3.0 mL/min flow rate, S=254 nM

  • **YMC C18, 5μ 150×4.6 mm column, gradient 10% to 100% MeCN/water, in the presence of 0.1% TFA, 25 min gradient time, 27 min total run time at 1.5 mL/min flow rate, λ=254 nM



Compound A80—4-(1-(2-(2,6-Difluorophenyl)acetyl)piperidin-4-yl)-N-(3,5-dimethylbenzyl)-2,6-dimethylpyrimidine-5-carboxamide
A80.1: Methyl/Ethyl 4-(1-(tert-butoxycarbonyl)piperidin-4-yl)-2,6-dimethylpyrimidine-5-carboxylate

tert-Butyl-4-(3-ethoxy-3-oxopropanoyl)piperidine-1-carboxylate (6.0 g, 20.0 mmol), AcOH (57 μL, 1.0 mmol), pyridine (80 μL, 1.0 mmol), and toluene (100 mL) were charged into a 250 mL flask equipped with fractional distillation apparatus. The reaction mixture was stirred at 130° C. (bath temperature) and the solvent distilled at about the boiling point of the MeOH/toluene azeotrope for 48 h. The reaction mixture was cooled to room temperature and concentrated in vacuo to give tert-butyl 4-(2-(ethoxy(or methoxy)carbonyl)-3-methoxybut-2-enoyl)piperidine-1-carboxylate which was used directly in the next step. To a stirred suspension of acetamidine HCl (2.84 g, 30.0 mmol) in EtOH (60 mL) was added NaOEt (2.05 g, 30.0 mmol) and the reaction mixture was stirred at room temperature for 30 min. To this suspension was added the crude tert-butyl 4-(2-(ethoxy(or methoxy)carbonyl)-3-methoxybut-2-enoyl)piperidine-1-carboxylate in EtOH (20 mL) slowly at room temperature and the resulting mixture was stirred at reflux for 5 h. The reaction mixture was cooled down to room temperature, concentrated under reduced pressure, and the residue was partitioned between water and CH2Cl2. The separated aq. layer was extracted with CH2Cl2 (×2) and the combined organic layers were dried over sodium sulfate, concentrated in vacuo, and purified by flash chromatography to give a mixture of the methyl and ethyl esters of A80.1 (2.51 g, ca. 35%).


A80.2: Methyl/Ethyl 2,4-dimethyl-6-(piperidin-4-yl)pyrimidine-5-carboxylate

To a stirred solution of A80.1 (2.51 g, ca. 6.91 mmol) in 1,4-dioxane (20 mL) was added HCl (20 mL, 4M in 1,4-dioxane, 80 mmol) and the reaction mixture was stirred at room temperature overnight. The reaction mixture was concentrated in vacuo and the residue was used for the next step without further purification.


A80.3: Methyl/Ethyl 4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-yl)-2,6-dimethylpyrimidine-5-carboxylate

A mixture of crude A80.2, 2,6-difluorophenylacetic acid (1.43 g, 8.31 mmol), Et3N (4.82 mL, 34.6 mmol) and DMF (20 mL) was treated with HATU (3.16 g, 8.31 mmol) and the resulting mixture was stirred at room temperature for 1 h. The reaction mixture was diluted with EtOAc, washed with aq. sodium bicarbonate, brine, dried over sodium sulfate, concentrated in vacuo and the residue purified by flash chromatography to afford a mixture of the methyl and ethyl esters of A80.3 (2.34 g, ca. 81%).


A80.4: 4-(1-(2-(2,6-Difluorophenyl)acetyl)piperidin-4-yl)-2,6-dimethylpyrimidine-5-carboxylic acid

To a stirred solution of A80.3 (2.1 g, ca 5.0 mmol) in MeOH (30 mL) was added aq. IN NaOH (20 mL) and the reaction mixture was stirred at room temperature overnight. MeOH was removed in vacuo and the residual aq. layer was acidified with IN HCl to pH 4-5, and extracted with CH2Cl2 (×5). The combined organic layers were dried over sodium sulfate and concentrated in vacuo to give acid A80.4 (1.88 g, ca. 97%).


Compound A80

Compound A80 was synthesized from A80.4 and 3,5-dimethylbenzylamine in an identical manner to Compound A1. 1H-NMR (400 MHz, DMSO-d6): δ 9.07 (t, 1H), 7.36 (m, 1H), 7.07 (m, 2H), 6.97 (s, 2H), 6.92 (s, 1H), 4.41 (m, 3H), 4.12 (d, 1H), 3.82 (d, 1H), 3.73 (d, 1H), 2.93 (m, 1H), 2.81 (m, 1H), 2.56 (s, 3H), 2.44 (m, 1H), 2.34 (s, 3H), 2.27 (s, 6H), 1.70 (m, 4H). MS (EI) for C29H32F2N4O2. found: 507.0 (MH+). Analytical HPLC, ret. time=3.46 min, 90% purity.


Compounds A81-A84

Compounds A81 to A84 were prepared from methods analogous to those used to prepare Compound A80 utilizing appropriate reagent replacements at various steps.

















HPLC





Retention
MS




Time
Reported


Cpd
Chemical Name
(min)
(MH+)


















A81
4-{1-[(2,6-difluorophenyl)acetyl]piperidin-4-yl}-N-
3.86*
513.0



[(3,5-dimethylphenyl)methyl]-N,2-



dimethylpyrimidine-5-carboxamide


A82
4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-yl)-
14.44
548.0



2,6-dimethyl-N-((6-(trifluoromethyl)pyridin-2-



yl)methyl)pyrimidine-5-carboxamide


A83
N-((2-cyanopyridin-4-yl)methyl)-4-(1-(2-(2,6-
2.15*
505.0



difluorophenyl)acetyl)piperidin-4-yl)-2,6-



dimethylpyrimidine-5-carboxamide


A84
4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-yl)-
3.96*
535.1



N-(3,5-dimethylbenzyl)-6-isopropyl-2-



methylpyrimidine-5-carboxamide









HPLC Conditions Used to Determine Retention Times:



  • Unless otherwise noted: YMC C18, 5μ 150×4.6 mm column, gradient 10% to 90% MeCN/H2O, in the presence of 0.1% TFA, 25 min gradient time, 27 min total run time at 1.5 mL/min flow rate, λ=254 nM

  • * Phenomenex, Gemini, 50×4.6 mm, 5μ column, gradient 10% to 90% MeCN/H2O, in the presence of 0.1% TFA, 5 min gradient time, 6 min total run time at 3.0 mL/min flow rate, λ=254 nM



Compound A85—N-(3,4-Dichlorobenzyl)-4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-yl)-2-(methylthio)pyrimidine-5-carboxamide
A85.1: Ethyl 4-(1-(tert-butoxycarbonyl)piperidin-4-yl)-2-(methylthio)pyrimidine-5-carboxylate

To a suspension of S-methyl thiourea sulfate (5.5 g, 39 mmol) in EtOH (50 mL) was added EtONa (2.7 g, 39 mmol). The resulting mixture was stirred for 15 min at room temperature. Crude enamine A1.1 in EtOH (30 mL) was added. The mixture was heated at 70° C. with stirring for 2 h. The solvent was removed under reduced pressure. The residue was stirred in EtOAc (500 mL) and filtered. Concentration of the filtrate gave the crude product, which was further purified by flash column chromatography.


A85.2: tert-Butyl 4-(5-(3,4-dichlorobenzylcarbamoyl)-2-(methylthio)pyrimidin-4-yl)piperidine-1-carboxylate

To a solution of A85.1 (4.23 g, 11 mmol) in MeOH/water (50 mL/20 mL) was added NaOH (2.5 g, 55 mmol). The resulting mixture was stirred at room temperature for 10 h. MeOH was removed under reduced pressure. The aq. phase was acidified with conc. HCl. The precepited product was filtered and dried under vacuum. The resulting carboxylic acid (800 mg, 2.25 mmol) was mixed with 2,4-dichlorobenzylamine (475 mg, 2.7 mmol) and DIEA (0.5 mL) in CH2Cl2 (4 mL). To this solution was added HATU (1.0 g, 2.7 mmol). The resulting mixture was stirred at room temperature for 12 h then diluted with aq. sat. NaHCO3. The mixture was extracted with EtOAc and the organic mixture was dried over sodium sulfate, filtered, and concentrated. The crude mixture was purified by flash column chromatography.


Compound A85

A85.2 (200 mg, 0.39 mmol) was treated with 4N HCl/dioxane (0.5 mL) in MeOH (3 mL) for 2 h. Ether (10 mL) was added. The precipitated HCl salt was filtered, dried and then mixed with 2,6-difluorophenylacetic acid (78 mg, 0.456 mmol), HOBt (62 mg, 0.456 mmol) and DIEA (193 mg, 1.5 mmol) in CH2Cl2 (3 mL). To this solution was added EDC (88 g, 0.456 mmol). The resulting reaction mixture was stirred at room temperature for 5 h then diluted with aq. sat. NaHCO3. The resulting mixture was extracted with EtOAc and the organic phase was dried over sodium sulfate, filtered, and concentrated. The crude product was purified by flash column chromatography. 1H-NMR (400 MHz, DMSO-d6): δ 9.21 (s, 1H), 8.64 (s, 1H), 7.63 (m, 2H), 7.36 (m, 2H), 7.07 (m, 2H), 4.47 (m, 3H), 4.15 (d, 1H), 3.83 (d, 1H), 3.75 (d, 1H), 3.25 (m, 1H), 3.05 (m, 1H), 2.56 (m, 1H), 2.54 (s, 3H), 1.70 (m, 4H). MS (EI) for C26H24Cl2F2N4O2S. found: 564.9 (MH+). Analytical HPLC, ret. time=5.22 min, 95% purity


Compound A86—N-(3,4-Dichlorobenzyl)-4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-yl)-2-methoxypyrimidine-5-carboxamide
A86.1: N-(3,4-Dichlorobenzyl)-4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-yl)-2-(methylsulfonyl)pyrimidine-5-carboxamide

To a 0° C. solution of A85.3 (50 mg, 0.088 mmol) in CH2Cl2 (3 mL) was added meta-chloroperoxybenzoic acid (mCPBA) (55 mg, 0.22 mmol, ˜70%). The resulting mixture was stirred for 2 h while slowly warming to room temperature. Aq. sat. NaHCO3 was added. The mixture was extracted with CH2Cl2 and the organic phase was washed with aq. Na2SO3 solution, dried over sodium sulfate, filtered, and concentrated. The crude product was purified by flash column chromatography.


Compound A86

A86.1 was treated with MeONa, which was freshly prepared from Na (23 mg, 1 mmol) in MeOH (2 mL). The mixture was stirred at room temperature for 2 h. Water was added to quench the reaction. The mixture was extracted with EtOAc, and the organic phase was dried over sodium sulfate, filtered, and concentrated. The crude product was purified by HPLC to give Compound A86. 1H-NMR (400 MHz, DMSO-d6): δ 9.18 (s, 1H), 8.64 (s, 1H), 7.63 (m, 2H), 7.37 (m, 2H), 7.07 (m, 2H), 4.47 (m, 3H), 4.15 (d, 1H), 3.95 (s, 3H), 3.83 (d, 1H), 3.75 (d, 1H), 3.28 (m, 1H), 3.10 (m, 1H), 2.56 (m, 1H), 1.70 (m, 4H). MS (EI) for C26H24Cl2F2N4O3. found: 549.1 (MH+). Analytical HPLC, ret. time=3.95 min, 95% purity.


Compounds A87-A98

Compounds A87 to A98 were prepared from methods analogous to those used to prepare Compounds A85 and A86 utilizing appropriate reagent replacements.

















HPLC





Retention
MS




Time
Reported


Cpd
Chemical Name
(min)
(MH+)


















A87
N-(3-chlorobenzyl)-4-(1-(2-(2,6-
3.55
544.0



difluorophenyl)acetyl)piperidin-4-yl)-2-((2-



hydroxyethyl)amino)pyrimidine-5-carboxamide


A88
N-(3-chlorobenzyl)-4-(1-(2-(2,6-
3.58
528.0



difluorophenyl)acetyl)piperidin-4-yl)-2-



(dimethylamino)pyrimidine-5-carboxamide


A89
2-amino-N-(3-chlorobenzyl)-4-(1-(2-(2,6-
3.57
500.0



difluorophenyl)acetyl)piperidin-4-yl)pyrimidine-5-



carboxamide


A90
N-(3-chlorobenzyl)-4-(1-(2-(2,6-
3.18
514.0



difluorophenyl)acetyl)piperidin-4-yl)-2-



(methylamino)pyrimidine-5-carboxamide


A91
N-(3-chlorobenzyl)-4-(1-(2-(2,6-
3.39
528.0



difluorophenyl)acetyl)piperidin-4-yl)-2-



(ethylamino)pyrimidine-5-carboxamide


A92
N-(3-chlorobenzyl)-4-(1-(2-(2,6-
4.22
515.0



difluorophenyl)acetyl)piperidin-4-yl)-2-



methoxypyrimidine-5-carboxamide


A93
N-(3-chlorobenzyl)-4-(1-(2-(2,6-
4.41
529.0



difluorophenyl)acetyl)piperidin-4-yl)-2-



ethoxypyrimidine-5-carboxamide


A94
N-(3-chlorobenzyl)-4-(1-(2-(2,6-
3.51
542.0



difluorophenyl)acetyl)piperidin-4-yl)-2-



(isopropylamino)pyrimidine-5-carboxamide


A95
N-(3-chlorobenzyl)-4-(1-(2-(2,6-
4.08
543.0



difluorophenyl)acetyl)piperidin-4-yl)-2-



isopropoxypyrimidine-5-carboxamide


A96
2-((2-aminoethyl)amino)-N-(3-chlorobenzyl)-4-(1-(2-
2.65
543.0



(2,6-difluorophenyl)acetyl)piperidin-4-yl)pyrimidine-5-



carboxamide


A97
N-(3-chlorobenzyl)-4-(1-(2-(2,6-
2.76
571.0



difluorophenyl)acetyl)piperidin-4-yl)-2-((2-



(dimethylamino)ethyl)amino)pyrimidine-5-carboxamide


A98
N-(3-chlorobenzyl)-4-(1-(2-(2,6-
3.52
501.1



difluorophenyl)acetyl)piperidin-4-yl)-2-



hydroxypyrimidine-5-carboxamide










HPLC conditions used to determine retention times: Phenomenex, Gemini, 50×4.6 mm, 5μ column, gradient 10% to 90% MeCN/H2O, in the presence of 0.1% TFA, 5 min gradient time, 6 min total run time at 3.0 mL/min flow rate, λ=254 nM


Compound A99—4-(1-(2,6-Difluorophenethyl)piperidin-4-yl)-N-(3,5-dimethylbenzyl)-2-methylpyrimidine-5-carboxamide
A99.1: 2-(2,6-Difluorophenyl)ethanol

To a stirred solution of 2-(2,6-difluorophenyl)acetic acid (150 mg, 0.871 mmol) in THF (2 mL) at room temperature was added borane dimethyl sulfide complex (1.30 mL, 2M in THF, 2.61 mmol). After stirring for 16 h at 60° C., the mixture was cooled down to room temperature and quenched with MeOH (1 mL). After stirring for 10 min, volatile materials were removed under vacuum and the resulting mixture was purified by silica gel chromatography (Hexane/EtOAc=6:1) to give A99.1 (105 mg, 76%) as a clear oil.


A99.2: 2-(2,6-Difluorophenyl)acetaldehyde

To a stirred solution of A99.1 (40.0 mg, 0.253 mmol) in CH2Cl2 (2 mL) at room temperature was added Dess-Martin periodinane (161 mg, 0.379 mmol). After stirring for 70 min, water (2 mL) was added and the resulting solution was extracted with EtOAc (4 mL and 2 mL). The combined organic layers were concentrated and purified by silica gel column chromatography (Hexane/EtOAc=5:1) to give A99.2 (22.0 mg, 56%) as a clear oil.


A99.3: 4-(1-(tert-Butoxycarbonyl)piperidin-4-yl)-2-methylpyrimidine-5-carboxylic acid

A1.2 was hydrolyzed to A99.3 with the same technique used to hydrolyze A80.3 to A80.4.


A99.4: tert-Butyl 4-(5-(3,5-dimethylbenzylcarbamoyl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate

A99.4 was synthesized from A99.3 and 3,5-dimethylbenzylamine in an identical manner to A1.6.


A99.5: N-(3,5-Dimethlbenzyl)-2-methyl-4-(piperidin-4-yl)pyrimidine-5-carboxamide hydrochloride

A99.5 was synthesized from A99.4 in a manner identical to that used to convert A1.2 to A1.3.


Compound A99

To a stirred solution of A99.2 (22.0 mg, 0.141 mmol), A99.5 (63.4 mg, 0.169 mmol) and CH2Cl2 (2 mL) at room temperature was added NaBH(OAc)3 (60.0 mg, 0.282 mmol). After stirring for 4.5 h at 40° C., aq. sat. NaHCO3 (5 mL) was added and the resulting solution was extracted with EtOAc (5 mL and 2 mL). The combined organic layers were concentrated and purified by silica gel column chromatography (EtOAc) to give Compound A99 (31.0 mg, 46%) as a white powder. 1H-NMR (400 MHz, CDCl3): δ 8.54 (s, 1H), 7.15 (m, 1H), 6.97 (s, 3H), 6.85 (t, 2H), 6.02 (t, 1H), 4.56 (d, 2H), 3.10 (m, 3H), 2.89 (m, 2H), 2.69 (s, 3H), 2.58 (m, 2H), 2.32 (s, 6H), 2.08 (m, 4H), 1.76 (m, 2H). MS (EI) for C28H32F2N4O. found 479.2 (MH+). Analytical HPLC, ret. time=13.060 min, 95% purity.


Compounds A100-A101

Compounds A100 to A101 were prepared from methods analogous to those used to prepare Compound A99 utilizing appropriate reagent replacements.

















HPLC





Retention
MS




Time
Reported


Cpd
Chemical Name
(min)
(MH+)


















A100
4-(1-(2-chlorophenethyl)piperidin-4-yl)-N-(3,5-
12.93
477.1



dimethylbenzyl)-2-methylpyrimidine-5-carboxamide


A101
N-(3,5-dimethylbenzyl)-2-methyl-4-(1-
12.68
443.3



phenethylpiperidin-4-yl)pyrimidine-5-carboxamide










HPLC conditions used to determine retention times: YMC C18, 5μ 150×4.6 mm column, gradient 10% to 90% MeCN/H2O, in the presence of 0.1% TFA, 25 min gradient time, 27 min total run time at 1.5 mL/min flow rate, λ=254 nM


Compound A102—N-(3-Chlorobenzyl)-4-(1-(2-(2,6-difluorophenyl)acetyl)-4-methylpiperidin-4-yl)-2-methylpyrimidine-5-carb oxamide
A102.1: tert-Butyl 4-(3-ethoxy-3-oxopropanoyl)-4-methylpiperidine-1-carboxylate

To a stirred solution of ethyl N-Boc-4-methylpiperidine-4-carboxylate (1 g, 3.69 mmol) in MeOH (30 mL) was added aq. IN NaOH (10 mL) and the resulting mixture was stirred at room temperature overnight. The reaction mixture was concentrated in vacuo and the aq. layer was acidified with aq. IN HCl to pH 4-5 and extracted with CH2Cl2 (×4). The combined organic layer was dried over sodium sulfate and concentrated in vacuo to give 1-(tert-butoxycarbonyl)-4-methylpiperidine-4-carboxylic acid (905 mg, quant.). Reaction mixture A: to a mixture of N,N′-dimethyldiimidazole (430 mg, 2.41 mmol) in THF (5 mL) was added the 1-(tert-butoxycarbonyl)-4-methylpiperidine-4-carboxylic acid (451 mg, 1.85 mmol) in THF (5 mL) dropwise. The reaction mixture was protected from light and stirred overnight at room temperature. Reaction mixture B: to a stirred mixture of potassium ethyl malonate (504 mg, 2.96 mmol) in EtOAc (15 mL) cooled to 0° C. was added Et3N (1.05 mL, 7.53 mmol) followed by MgCl2 (342 mg, 3.59 mmol). The reaction mixture was slowly heated to 35° C. and then maintained at 35° C. overnight. To reaction mixture B was added reaction mixture A slowly at room temperature and the resulting mixture was stirred at room temperature overnight. The reaction mixture was diluted with EtOAc, washed with aq. 0.5N HCl, aq. NaHCO3, dried over sodium sulfate, concentrated in vacuo, and the residue was purified by flash chromatography to afford A102.1 (423 mg, 73%).


A102.2: tert-Butyl 4-(3-(dimethylamino)-2-(ethoxycarbonyl)acryloyl)-4-methylpiperidine-1-carboxylate

A mixture of A102.1 (423 mg, 1.35 mmol) and DMF/DMA (250 μL, 1.76 mmol) was stirred at 110° C. for 2 h. An additional amount of DMF/DMA (500 μL, 3.52 mmol) was added to the reaction mixture and the resulting mixture was stirred at 110° C. for 2 h. The reaction mixture was concentrated in vacuo to give A102.2, which was used directly for the next step without further purification.


A102.3: Ethyl 4-(1-(tert-butoxycarbonyl)-4-methylpiperidin-4-yl)-2-methylpyrimidine-5-carboxylate

To a stirred solution of acetamide-HCl (191 mg, 2.02 mmol) in EtOH (10 mL) was added NaOEt (136 mg, 2.0 mmol) and the resulting mixture was stirred at room temperature for 20 min. To this suspension was added A102.2 (crude material) in EtOH (5 mL) and the reaction mixture was stirred at reflux for 3 h. The reaction mixture was cooled to room temperature, concentrated in vacuo, and the residue was diluted with water, extracted with CH2Cl2 (×2), dried over sodium sulfate, concentrated in vacuo, and the residue was purified by flash chromatography to afford A102.3 (369 mg, 75% from A102.1).


A102.4: Ethyl 4-(1-(2-(2,6-difluorophenyl)acetyl)-4-methylpiperidin-4-yl)-2-methylpyrimidine-5-carboxylate

To a stirred solution of A102.3 (369 mg, 1.02 mmol) in 1,4-dioxane (6 mL) was added HCl (4 mL, 4M in 1,4-dioxane, 16 mmol) and the resulting mixture was stirred at room temperature overnight. The reaction mixture was concentrated in vacuo and the crude amine residue was used directly for the next step. To a stirred suspension of the crude amine, Et3N (711 μL, 5.10 mmol), and 2,6-difluorophenylacetic acid (211 mg, 1.23 mmol) was added HATU (465 mg, 1.22 mmol) and the reaction mixture was stirred at room temperature for 1 h. The reaction mixture was partitioned between aq. IN NaOH and EtOAc and the separated organic layer was washed with brine, dried over sodium sulfate, concentrated in vacuo, and the residue was purified by flash chromatography to give A102.4 (362 mg, 85% from A102.3).


A102.5: 4-(1-(2-(2,6-Difluorophenyl)acetyl)-4-methylpiperidin-4-yl)-2-methylpyrimidine-5-carboxylic acid

To a stirred solution of A102.4 (362 mg, 0.87 mmol) in THF (5 mL)/MeOH (10 mL) was added aq. 1N NaOH (4 mL) and the reaction mixture was stirred at 50° C. for 5 h. The reaction mixture was cooled to room temperature, concentrated in vacuo, and the residue was diluted with water, acidified with aq. IN HCl to pH 3-4, and extracted with CH2Cl2 (×4). The combined extracts were dried over sodium sulfate and concentrated in vacuo to afford A102.5 (317 mg, 94%).


Compound A102

To a stirred solution of A102.5 (117 mg, 0.30 mmol), 3-chlorobenzylamine (44 μL, 0.36 mmol), and Et3N (209 μL, 1.50 mmol) in DMF (3 mL) was added HATU (137 mg, 0.36 mmol) and the reaction mixture was stirred at room temperature for 30 min. The reaction mixture was directly purified by preparative reverse phase HPLC to give Compound A102 (84 mg, 55%) as a white powder after lyophilization. Analytical HPLC: retention time=14.852 min, 98%. 1H-NMR (400 MHz, CDCl3): δ 8.45 (s, 1H), 7.31-7.17 (m, 5H), 6.89-6.85 (m, 2H), 6.49 (s, 1H), 4.59 (dd, 1H), 4.49 (dd, 1H), 3.76-3.71 (m, 1H), 3.68 (d, 1H), 3.58 (d, 1H), 3.59-3.55 (m, 1H), 3.35-3.29 (m, 1H), 3.18-3.11 (m, 1H), 2.71 (s, 3H), 2.48-2.42 (m, 1H), 2.33-2.27 (m, 1H), 1.75-1.65 (m, 2H), 1.43 (s, 3H). MS (EI) for C27H27ClF2N4O2. found 513.0 (MH+).


Compound A103—N-(3-Chlorobenzyl)-4-(1-(2-(2,6-difluorophenyl)acetyl)-4-fluoropiperidin-4-yl)-2-methylpyrimidine-5-carboxamide
A103.1: Ethyl N-Boc-4-fluoropiperidine-4-carboxylate

A stirred solution of lithium diisopropyl amide (LDA) (2.6 mL, 2.0 M in THF/heptane/ethylbenzene, 5.2 mmol) was added ethyl N-Boc-piperidine-4-carboxylate (1.03 g, 4.0 mmol) in THF (5 mL) dropwise over 10 min at 0° C. The reaction mixture was stirred at 0° C. for 30 min and then slowly added to a solution of N-fluorobenzenesulfonimide (1.77 g, 5.6 mmol) in THF (15 mL) at 0° C. The reaction mixture was stirred at 0° C. for 30 min and then at room temperature overnight. The reaction mixture was diluted with aq. NaHCO3 and extracted with CH2Cl2 (×3). The combined organic layer was dried over sodium sulfate, concentrated in vacuo, and the residue was purified by flash chromatography to afford A103.1 (658 mg, 60%).


A103: N-(3-Chlorobenzyl)-4-(1-(2-(2,6-difluorophenyl)acetyl-4-fluoropiperidin-4-yl)-2-methylpyrimidine-5-carboxamide

Compound A103 was synthesized from A103.1 in the same manner that Compound A102 was synthesized from ethyl N-Boc-4-methylpiperidine-4-carboxylate. Analytical HPLC: retention time=13.124 min, 98%. 1H-NMR (400 MHz, CDCl3): δ 8.62 (s, 1H), 7.40 (s, 1H), 7.31-7.20 (m, 4H), 6.94-6.88 (m, 2H), 6.09 (t, 1H), 4.66-4.58 (m, 3H), 4.00-3.96 (m, 1H), 3.77 (s, 2H), 3.61-3.53 (m, 1H), 3.07-2.99 (m, 1H), 2.73 (s, 3H), 2.43-2.19 (m, 3H), 2.12-2.06 (m, 1H). MS (EI) for C26H24ClF3N4O2. found 517.0 (MH+).


Compounds A104-A105

Compounds A104 to A105 were prepared from methods analogous to those used to prepare Compound A103 utilizing appropriate reagent replacements.

















HPLC





Retention
MS




Time
Reported


Cpd
Chemical Name
(min)
(MH+)


















A104
4-(1-(2-(2,6-difluorophenyl)acetyl)-4-
12.17
552.0



fluoropiperidin-4-yl)-2-methyl-N-((6-



(trifluoromethyl)pyridin-2-



yl)methyl)pyrimidine-5-carboxamide


A105
4-(1-(2-(2,6-difluorophenyl)acetyl)-4-
13.99
511.1



fluoropiperidin-4-yl)-N-(3,5-dimethylbenzyl)-2-



methylpyrimidine-5-carboxamide










HPLC conditions used to determine retention times: YMC C18, 5μ 150×4.6 mm column, gradient 10% to 90% MeCN/H2O, in the presence of 0.1% TFA, 25 min gradient time, 27 min total run time at 1.5 mL/min flow rate, λ=254 nM


Compound A106—N-(3,5-Dimethylbenzyl)-4-(1-((2-fluorophenyl)carbamoyl)piperidin-4-yl)-2-methylpyrimidine-5-carboxamide
Compound A106

To a stirred solution of A99.5 (100 mg, 0.267 mmol), DIEA (90 μL, 0.53 mmol) and CH2Cl2 (2 mL) at room temperature was slowly added a solution of 2-fluorophenyl isocyanate (32.9 mg, 0.240 mmol) in CH2Cl2 (1 mL). After stirring for 1 h, the resulting mixture was filtered through cotton and the collected solid was purified by silica gel column chromatography (CH2Cl2/MeOH=19/1) to give Compound A106 (72.0 mg, 57%) as a white solid. 1H-NMR (400 MHz, CDCl3): δ 8.58 (s, 1H), 8.11 (td, 1H), 7.10 (q, 1H), 7.05 (dd, 1H), 6.97 (s, 3H), 6.96 (m, 1H), 6.64 (d, 1H), 6.16 (t, 1H), 4.56 (d, 2H), 4.19 (d, 2H), 3.42 (tt, 1H), 3.00 (td, 2H), 2.70 (s, 3H), 2.33 (s, 6H), 2.00 (qd, 2H), 1.86 (m, 2H). MS (EI) for C27H30FN5O2. found 476.2 (MH+). Analytical HPLC, ret. time=16.084 min, 99% purity.


Compound A107—4-(1-((2,6-Difluorophenyl)carbamoyl)piperidin-4-yl)-N-(3,5-dimethylbenzyl)-2-methylpyrimidine-5-carboxamide

Compound A107 was synthesized from A99.5 in the same manner as Compound A106. MS (EI) for C27H29F2N5O2. found 494.0 (MH+). Analytical HPLC, ret. time=15.368 min, 99% purity.


Compound A108—4-(1-(2-(2,6-Difluorophenyl)acetyl)piperidin-4-yl)-N-(3,5-dimethylbenzyl)-2-methyl-6-(methylamino)pyrimidine-5-carboxamide
A108.1: Diethyl 2-((1-(tert-butoxycarbonyl)piperidin-4-yl)methylene)malonate

Diethyl malonate (3.75 g, 23 mmol) and N-Boc piperidine-4-carboxaldehyde (5 g, 23 mmol) were dissolved in iPrOH (30 mL). To this solution were added catalytic amounts of piperidine (70 mg) and AcOH (70 mg). The resulting solution was stirred at room temperature for 48 h. The mixture was then concentrated, and the crude product was used in the next step without further purification.


A108.2: Ethyl 4-(1-(tert-butoxycarbonyl)piperidin-4-yl)-2-methyl-6-oxo-1,6-dihydropyrimidine-5-carboxylate

To a flask containing a suspension of acetamidine hydrochloride (2.2 g, 23 mmol) in EtOH (25 mL) was added EtONa (1.6 g, 23 mmol). The resulting mixture was stirred for 15 min at room temperature. To this mixture was added A108.1 as a solution in EtOH (15 mL). The mixture was heated to 70° C. with stirring for 2 h. The solvent was removed under reduced pressure. The residue was dissolved in CH2Cl2 and washed with brine. Concentration gave crude dihydropyrimidinone which was used as is in the next step by mixing with N-bromosuccinimide (NBS) (1.2 g, 6.6 mmol), freshly ground K2CO3 (7.6 g, 55 mmol) and benzoyl peroxide (65 mg, 0.27 mmol) in CCl4 (25 mL). The resulting mixture was stirred for 1 h at 85° C. It was then cooled to room temperature. Water was added to dissolve the inorganic salts. The mixture was extracted with EtOAc. The organic layer was washed with brine and dried over sodium sulfate. Concentration gave the crude product, which was further purified by flash column chromatography to yield A108.2.


A108.3: Ethyl 4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-yl)-2-methyl-6-oxo-1,6-dihydropyrimidine-5-carboxylate

To a solution of A108.2 (1.1 g, 3 mmol) in EtOH (15 mL) was added 4N HCl in dioxane (2.5 mL). The resulting solution was stirred for 12 h at room temperature. Ether (100 mL) was added. The resulting solid was filtered and dried under vacuum. The crude amine HCl salt was used as is without further purification.


The ethyl 2-methyl-6-oxo-4-(piperidin-4-yl)-1,6-dihydropyrimidine-5-carboxylate hydrochloride obtained in the previous step from the Boc deprotection of A108.2 was mixed with 2,6-difluorophenylacetic acid (619 mg, 3.6 mmol), HOBt (607 mg, 4.5 mmol) and DIEA (3 mL) in CH2Cl2 (15 mL). To this solution was added EDC (860 g, 4.5 mmol). The resulting reaction mixture was stirred at room temperature for 5 h then diluted with aq. sat. NaHCO3. The resulting mixture was extracted with EtOAc and the organic phase was concentrated. The product was precipitated in ether. Filtration and drying under vacuum gave the desired product.


A108.4: 4-(1-(2-(2,6-Difluorophenyl)acetyl)piperidin-4-yl)-2-methyl-6-(methylamino)pyrimidine-5-carboxylic acid

To a solution of A108.3 (200 mg, 0.476 mmol), 1,8-diazabicyclo[5.4.0.]undec-7-ene (DBU) (109 mg, 0.71 mmol) and MeNH2 (0.5 mL, 2.0 M in THF) in CH3CN (2 mL) was added (benzotriazol-1-yloxy)tris(dimethylamino)phosphonium hexafluorophosphate (BOP) (273 mg, 0.62 mmol). The resulting solution was stirred at room temperature for 3 h. It was then diluted with CH2Cl2, washed with Na2CO3, brine, and concentrated. The crude product was purified by flash column chromatography. The resulting pure ethyl 4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-yl)-2-methyl-6-(methylamino)pyrimidine-5-carboxylate was stirred with NaOH (72 mg, 1.8 mmol) in MeOH/water (5 mL/5 mL) at 80° C. for 2 h. The reaction solution was concentrated and the solid was dissolved in water (5 mL) and acidified with conc. HCl. The precipitated product was filtered and dried.


Compound A108

A108.4 (0.35 mmol) was mixed with 3,5-dimethylbenzylamine (60 mg, 0.45 mmol) and DIEA (0.5 mL) in DMF (3 mL). To this solution was added HATU (170 mg, 0.45 mmol). The resulting reaction mixture was stirred at room temperature for 2 h then diluted with aq. sat. NaHCO3. The resulting mixture was extracted with CH2Cl2 and the organic mixture was dried over sodium sulfate, filtered, and concentrated. The crude mixture was purified by prep HPLC to give Compound A108. 1H-NMR (400 MHz, DMSO-d6): δ 8.91 (t, 1H), 7.35 (m, 1H), 7.07 (m, 2H), 6.96 (s, 2H), 6.91 (s, 1H), 6.61 (m, 1H), 4.38 (m, 3H), 4.10 (d, 1H), 3.82 (d, 1H), 3.73 (d, 1H), 3.38 (m, 1H), 2.81 (m, 1H), 2.80 (d, 3H), 2.56 (m, 1H), 2.35 (s, 3H), 2.26 (s, 6H), 1.70 (m, 4H). MS (EI) for C29H33F2N5O2. found: 522.1 (MH+). Analytical HPLC, ret. time=18.42 min, 96% purity.


Compound A109—4-{1-[(2,6-Difluorophenyl)acetyl]piperidin-4-yl}-N-[(3,5-dimethylphenyl)methyl]-2-methyl-6-(methylamino)pyrimidine-5-carboxamide

A109 was synthesized from A108.4 in the same manner as Compound A108. 1H-NMR (400 MHz, DMSO-d6): δ 9.04 (t, 1H), 7.36 (m, 5H), 7.07 (m, 2H), 6.68 (m, 1H), 4.45 (m, 3H), 4.10 (d, 1H), 3.82 (d, 1H), 3.73 (d, 1H), 2.81 (m, 1H), 2.80 (d, 3H), 2.65 (m, 1H), 2.35 (s, 3H), 2.30 (m, 1H), 1.70 (m, 4H). MS (EI) for C27H28ClF2N5O2. found: 528.1 (MH+). Analytical HPLC, ret. time=3.23 min, 95% purity.


Compound A110—N-(1-(3-Chlorophenyl)-2-hydroxyethyl)-4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-yl)-2-methylpyrimidine-5-carboxamide
A110.1: Methyl 2-(3-chlorophenyl)-2-(4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-yl-2-methylpyrimidine-5-carboxamido)acetate

A1.5 (200 mg, 0.53 mmol) was mixed with 3-chlorophenylglycine methyl ester hydrochloride (150 mg, 0.63 mmol) and DIEA (0.5 mL) in CH2Cl2 (3 mL). To this solution was added HATU (240 mg, 0.63 mmol). The resulting mixture was stirred at room temperature for 3 h then diluted with aq. sat. NaHCO3. The mixture was extracted with EtOAc and the organic phase was dried over sodium sulfate, filtered, and concentrated. The crude mixture was purified by flash column chromatography.


Compound A110

To a 0° C. solution of A110.1 (156 mg, 0.26 mmol) in THF (3 mL) was added litium aluminum hydride (LAH) (0.3 mL, 1.0 M in THF). The resulting solution was stirred for 1 h, and quenched with 2 N NaOH solution. The mixture was extracted with EtOAc and the organic phase was dried over sodium sulfate, filtered, and concentrated. The crude product was purified by flash column chromatography to give A110.2. 1H-NMR (400 MHz, DMSO-d6): δ 9.09 (d, 1H), 8.66 (s, 1H), 7.46 (m, 1H), 7.37 (m, 4H), 7.07 (m, 2H), 5.08 (m, 2H), 4.42 (m, 1H), 4.13 (m, 1H), 3.83 (m, 2H), 3.68 (t, 2H), 3.41 (m, 1H), 3.10 (m, 1H), 2.64 (s, 3H), 2.56 (m, 1H), 1.70 (m, 4H). MS (EI) for C27H27ClF2N4O3. found: 529.0 (MH+). Analytical HPLC, ret. time=3.70 min, 94% purity.


Compound A111—N-(3-Chlorobenzyl)-4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-yl)-6-methoxy-2-methylpyrimidine-5-carboxamide
A111.1: 4-(1-(2-(2,6-Difluorophenyl)acetyl)piperidin-4-yl)-6-methoxy-2-methylpyrimidine-5-carboxylic acid

To a solution of A108.3 (100 mg, 0.23 mmol) and DBU (70 mg, 0.46 mmol) in THF (2 mL) was added BOP (140 mg, 0.31 mmol). The resulting solution was stirred at room temperature for 10 min, then Cs2CO3 (150 mg, 0.46 mmol) and MeOH (1.5 mL) were added. The mixture was stirred at room temperature for an additional 2 h. The crude product was extracted with EtOAc, washed with Na2CO3, brine, and concentrated. The resulting crude ethyl ester was stirred with NaOH (25 mg, 0.62 mmol) in MeOH/water (2 mL/2 mL) at 80° C. for 2 h. The reaction solution was concentrated and the resulting solid was dissolved in water (5 mL) and acidified with conc. HCl. The precipitated product was filtered and dried to give A111.1.


Compound A111

Crude A111.1 (0.2 mmol) was mixed with 3-chlorobenzylamine (42 mg, 0.3 mmol) and DIEA (0.2 mL) in DMF (2 mL). To this solution was added HATU (114 mg, 0.3 mmol). The resulting reaction mixture was stirred at room temperature for 2 h then diluted with aq. sat. NaHCO3. The resulting mixture was extracted with EtOAc and the organic mixture was dried over sodium sulfate, filtered, and concentrated. The crude mixture was purified by prep HPLC to give Compound A111. 1H-NMR (400 MHz, DMSO-d6): δ 9.08 (t, 1H), 7.36 (m, 5H), 7.07 (m, 2H), 4.45 (m, 3H), 4.12 (d, 1H), 3.95 (s, 3H), 3.82 (d, 1H), 3.73 (d, 1H), 3.02 (m, 1H), 2.84 (m, 1H), 2.55 (s, 3H), 2.45 (m, 1H), 1.70 (m, 4H). MS (EI) for C27H27ClF2N4O3. found: 529.0 (MH+). Analytical HPLC, ret. time=22.49 min, 92% purity.


Compound A112—4-(1-(2-(2,6-Difluorophenyl)acetyl)piperidin-4-yl)-N-(3,5-dimethylbenzyl)-2-methyl-6-(trifluoromethyl)pyrimidine-5-carboxamide
A112.1: tert-Butyl 4-(2-(ethoxycarbonyl)-4,4,4-trifluoro-3-oxobut-1-enyl)piperidine-1-carboxylate

Ethyl 4,4,4-trifluoroacetoacetate (4.3 g, 23 mmol) and N-Boc piperidine-4-carboxaldehyde (5 g, 23 mmol) were dissolved in iPrOH (30 mL). To this solution were added catalytic amounts of piperidine (70 mg) and AcOH (70 mg). The resulting solution was stirred at room temperature for 48 h. The mixture was then concentrated, and the crude product was used in the next step without further purification.


A112.2: Ethyl 4-(1-(tert-butoxycarbonyl)piperidin-4-yl)-2-methyl-6-(trifluoromethyl)pyrimidine-5-carboxylate

To a flask containing a suspension of acetamidine hydrochloride (2.5 g, 27 mmol) in EtOH (25 mL) was added EtONa (1.9 g, 27 mmol). The resulting mixture was stirred for 15 min at room temperature. To this mixture was added A112.1 as a solution in EtOH (15 mL). The mixture was stirred at room temperature for 12 h and then was concentrated. The residue was dissolved in DMF (20 mL), reacted with pTsOH (8.7 g, 45 mmol) at 110° C. for 2 h. The reaction mixture was cooled to room temperature, basified with 20% NaOH aq. solution until pH 10. The crude product was extracted with CH2Cl2, dried over sodium sulfate, and concentrated. The residue (4.2 g, 10 mmol) was dissolved in CH2Cl2 (20 mL), to which were added NaHCO3 (3.1 g, 30 mmol), Boc2O (3.2 g, 15 mmol) and water (20 mL). The mixture was stirred at room temperature for 12 h, then the organic layer was washed with brine, and concentrated. Flash column chromatography gave the desired dihydropyrimidine which was dissolved in DCE (30 mL), to which was added MnO2 (1.8 g, 21 mmol). The resulting mixture was stirred for 1 h at 85° C., cooled to room temperature and filtered through Celite. The filtrate was washed with brine and dried over sodium sulfate. Concentration gave crude A112.2 which was used in the next step without further purification.


A112.3: Ethyl 4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-yl)-2-methyl-6-(trifluoromethyl)pyrimidine-5-carboxylate

To a solution of A112.2 (290 mg, 0.69 mmol) in MeOH (5 mL) was added 4N HCl in dioxane (1 mL). The resulting solution was stirred for 12 h at room temperature. EtOAc (25 mL) was added. The solid was filtered and dried under vacuum. The crude product was used without further purification by mixing with 2,6-difluorophenylacetic acid (180 mg, 1.1 mmol), HATU (418 mg, 1.1 mmol) and DIEA (645 mg, 5 mmol) in THF (5 mL). The resulting reaction mixture was stirred at room temperature for 2 h then diluted with aq. sat. NaHCO3. The resulting mixture was extracted with EtOAc and the organic mixture was dried over sodium sulfate, filtered, and concentrated. The crude product was stirred with NaOH (200 mg, 5 mmol) in MeOH/water (2 mL/1 mL) at 80° C. for 3 h. The solution was concentrated and the solid was dissolved in water (5 mL) and acidified with conc. HCl. The precipitated product was filtered and dried.


Compound A112

A112.3 (80 mg, 0.18 mmol) was mixed with DIEA (0.5 mL) and HATU (100 mg, 0.27 mmol) in THF (3 mL). The formation of the HOAT ester was complete in 3 h. The reaction mixture was diluted with EtOAc, washed with NaHCO3, and concentrated. The crude HOAT ester was reacted with neat 3,5-dimethylbenzylamine (0.5 mL) at room temperature for 12 h. The resulting mixture was extracted with EtOAc and washed with 2 N HCl aq. solution. The organic mixture was dried over sodium sulfate, filtered, and concentrated. The crude mixture was purified by prep HPLC to give Compound A112. MS (EI) for C29H29F5N4O2. found: 561.0 (MH+). Analytical HPLC, ret. time=4.50 min, 86% purity.


Compound A113—4-(1-(2-(2,6-Difluorophenyl)acetyl)piperidin-4-yl)-N-(3,5-dimethylbenzyl)-N,2-dimethylpyrimidine-5-carboxamide

To a stirred solution of A1 (90.0 mg, 0.183 mmol) in DMF (2.0 mL) at room temperature was added NaH (10.9 mg, 60% dispersion in mineral oil, 0.274 mmol). After stirring for 5 min at room temperature, iodomethane (40 μmol, 0.64 mmol) was added. The reaction mixture was stirred for 2 h at room temperature, quenched with aq. sat. NaHCO3 (3 mL) and then extracted with EtOAc (2×3 mL). The combined organic layers were concentrated and purified by silica gel column chromatography (hexane/EtOAc=2:5) to give Compound A113 (45.0 mg, 49%) as a white powder after lyophilization. 1H-NMR (400 MHz, CDCl3, rotameric mixture): δ 8.47 and 8.45 (two of s, 1H), 7.23 (m, 1H), 6.99 (s, 2H), 6.90 (m, 2H), 6.67 (s, 1H), 4.73 (m, 2H), 4.35 (s, 1H), 4.09 (d, 1H), 3.75 (s, 2H), 3.25-3.09 (m, 1H), 3.15 and 2.79 (two of s, 3H), 3.02-2.92 (m, 1H), 2.73 and 2.70 (two of s, 3H), 2.68-2.53 (m, 1H), 2.33 and 2.28 (two of s, 6H), 2.05-1.77 (m, 4H). MS (EI) for C29H32F2N4O2. found 507.2 (MH+). Analytical HPLC, ret. time=18.180 min, 93% purity.


Compound A114—4-(1-(2-(2,6-Difluorophenyl)acetyl)-1,2,3,4-tetrahydropyridin-4-yl)-N-(3,5-dimethylbenzyl)-2-methylpyrimidine-5-carboxamide
A114.1: Ethyl 4-chloro-2-methylpyrimidine-5-carboxylate

A mixture of ethyl 2-methyl-6-oxo-1,6-dihydropyrimidine-5-carboxylate (1.00 g, 5.49 mmol) and phosphorous oxychloride (12 mL) was stirred for 2 h at 90° C. The reaction mixture was concentrated under vacuum, dissolved in MeCN (10 mL), and concentrated again. The resulting material was dissolved in EtOAc (10 mL) and treated with aq. sat. NaHCO3 (10 mL). The aq. solution was separated and further extracted with EtOAc (2×5 mL). The organic layers were immediately washed with aq. sat. NaHCO3 (5 mL), dried over anhydrous magnesium sulfate, concentrated, and purified by silica gel chromatography (hexane/EtOAc=7:1) to provide A114.1 (670 mg, 61%) as a clear oil.


A114.2: Ethyl 4-(1-(tert-butoxycarbonyl)-1,2,3,4-tetrahydropyridin-4-yl)-2-methylpyrimidine-5-carboxylate

To a stirred mixture of A114.1 (670 mg, 3.34 mmol), tert-butyl 4-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-5,6-dihydropyridine-1(2H)-carboxylate (1.34 g, 4.34 mmol) and PdCl2(dppf)2.CH2Cl2 (273 mg, 0.334 mmol) in DMF (10 mL) was added Et3N (1.16 mL, 8.35 mmol) and water (2 mL) in sequence. After stirring for 110 min at 90° C., water (3 mL) and aq. sat. NH4Cl (6 mL) were added and the resulting solution was extracted with EtOAc (4×8 mL). The combined organic layers were concentrated and purified by silica gel chromatography (Hexane/EtOAc=5:1→4:1) to provide A114.2 (980 mg, 85%) as a clear oil. 1H-NMR (400 MHz, CDCl3, rotameric mixture): δ 9.02 (s, 1H), 7.05 and 6.95 (two of d, J=8.0 Hz, 1H), 4.93 and 4.84 (two of d, J=8.0 Hz, 1H), 4.50-4.43 (m, 1H), 4.40 (q, J=7.2 Hz, 2H), 4.07-3.93 (m, 1H), 3.57-3.50 (m, 1H), 2.75 (s, 3H), 2.19-2.02 (m, 2H), 1.50 (s, 9H), 1.41 (t, J=7.2 Hz, 3H). MS (EI) for C18H25N3O4. found 348.1 (MH+).


A114.3: tert-Butyl 4-(5-(3,5-dimethylbenzylcarbamoyl)-2-methylpyrimidin-4-yl)-3,4-dihydropyridine-1(2H)-carboxylate

A mixture of A114.2 (248 mg, 0.714 mmol), LiOH (25.7 mg, 1.07 mmol), THF (4 mL) and water (1 mL) was stirred for 80 min at 50° C. The resulting solution was concentrated under vacuum to give the corresponding acid; MS (EI) for C16H21N3O4. found 320.1 (MH+). To a stirred solution of the resulting carboxylic acid, (3,5-dimethylphenyl)methanamine (106 mg, 0.785 mmol), HATU (407 mg, 1.07 mmol) and DMF (4 mL) at room temperature was added DIEA (0.37 mL, 2.14 mmol). After stirring for 2.5 h, water (4 mL) was added and the resulting solution was extracted with EtOAc (3×4 mL). The combined organic layers were concentrated and purified by silica gel column chromatography (hexane/EtOAc=3:2→4:3) to give A114.3 (210 mg, 67%) as a pale yellow foam. MS (EI) for C25H32N4O3. found 437.1 (MH+).


Compound A114

A mixture of A114.3 (210 mg, 0.481 mmol) and 4N HCl in 1,4-dioxane (3 mL) was stirred for 1 h at room temperature, and concentrated under vacuum. EtOAc (2 mL) was added and the mixture was concentrated again. To a stirred solution of the resulting residue, 2-(2,6-difluorophenyl)acetic acid (108 mg, 0.625 mmol), HATU (274 mg, 0.722 mmol) and DMF (4 mL) was added DIEA (0.33 mL, 1.9 mmol). After stirring for 4.5 h at room temperature, aq. sat. NaHCO3 (4 mL) and water (1 mL) were added and the resulting solution was extracted with EtOAc (3×4 mL). The combined organic layers were concentrated and purified by silica gel column chromatography (Hexane/EtOAc=2:1). The isolated material was further purified by prep HPLC to give Compound A114 (25.0 mg, 11%) as a white powder after lyophilization. 1H-NMR (400 MHz, CDCl3, rotameric mixture): δ 8.60 and 8.59 (two of s, 1H), 7.24 (m, 1H), 6.96 (s, 3H), 6.93 (dd, 1H), 4.56 (dd, 2H), 4.26-4.07 (m, 2H), 3.85 and 3.82 (two of s, 2H), 3.76 and 3.56 (two of ddd, 1H), 2.74 and 2.73 (two of s, 3H), 2.32 (s, 6H), 2.31-2.04 (m, 2H). MS (EI) for C28H28F2N4O2. found 491.0 (MH+). Analytical HPLC, ret. time=18.332 min, 99% purity.


Compound A115—4-(1-(2-(2-Chlorophenyl)-2-oxoethyl)piperidin-4-yl)-N-(3,5-dimethylbenzyl)-2-methylpyrimidine-5-carboxamide

To a stirred solution of A99.5 (100 mg, 0.267 mmol), 2-bromo-1-(2-chlorophenyl)ethanone (68.6 mg, 0.294 mmol) and CH2Cl2 (2 mL) at room temperature was added DIEA (0.14 mL, 0.80 mmol). After stirring for 70 min, aq. sat. NaHCO3 (3 mL) was added and the resulting solution was extracted with EtOAc (3×3 mL). The combined organic layers were concentrated and purified by silica gel column chromatography (Hexane/EtOAc=1:3→1:4) to give Compound A115 (47 mg, 36%) as a pale yellow powder after lyophilization. 1H-NMR (400 MHz, CDCl3): δ 8.53 (s, 1H), 7.38 (m, 4H), 6.96 (s, 3H), 6.05 (t, 1H), 4.55 (d, 2H), 3.76 (s, 2H), 3.13 (tt, 1H), 3.05 (d, 2H), 2.68 (s, 3H), 2.32 (s, 6H), 2.26 (m, 2H), 2.08 (qd, 2H), 1.73 (m, 2H). MS (EI) for C28H31ClN4O2. found 491.1 (MH+). Analytical HPLC, ret. time=12.464 min, 97% purity.


Compound B1—(1E)-1-(4-{1-[(2,6-Difluorophenyl)acetyl]piperidin-4-yl}-2,6-dimethylpyrimidin-5-yl)ethanone O-[3-(trifluoromethyl)phenyl]
B1.1: 4-(1-(2-(2,6-Difluorophenyl)acetyl)piperidin-4-yl)-2,6-dimethylpyrimidine-5-carboxylic acid

To a stirred solution of the methyl/ethyl ester A80.3 (2.1 g, ca 5.0 mmol) in MeOH (30 mL) was added aq. IN NaOH (20 mL) and the reaction mixture was stirred at room temperature overnight. MeOH was removed in vacuo and the residual aq. layer was acidified with IN HCl to pH 4-5, and extracted with CH2Cl2 (×5). The combined organic layer was dried over sodium sulfate and concentrated in vacuo to give acid B1.1 (1.88 g, ca. 97%).


B1.2: 4-(1-(2-(2,6-Difluorophenyl)acetyl)piperidin-4-yl)-2,6-dimethylpyrimidine-5-carbaldehyde

To a stirred solution of acid B1.1 (195 mg, 0.50 mmol) and Et3N (77 μL, 0.55 mmol) in THF (5 mL) was added ethyl chloroformate (53 μL, 0.55 mmol) at 0° C. After stirring for 1 h at 0° C., the precipitates were filtered and an aq. solution of NaBH4 was added dropwise to the filtrate at 0° C. After stirring for 1.5 h at 0° C., acetone (1 mL) was added to destroy the excess NaBH4 and the resulting mixture was stirred for 30 min. The reaction mixture was diluted with water and extracted with CH2Cl2 (×2). The combined organic layers were dried over sodium sulfate, concentrated in vacuo, and the residue was purified by flash chromatography to afford the corresponding alcohol (104 mg, 55%, 0.28 mmol) which was then dissolved in CH2Cl2 (6 mL) and treated with Dess-Martin periodinane (235 mg, 0.55 mmol) with stirring at room temperature for 2 h. The reaction mixture was diluted with water and the separated aq. layer was extracted with CH2Cl2 (×2). The combined organic layers were dried over sodium sulfate, concentrated in vacuo, and the residue was purified by flash chromatography to give B1.2 (101 mg, 98%).


B1.3: 1-(4-(5-Acetyl-2,6-dimethylpyrimidin-4-yl)piperidin-1-yl)-2-(2,6-difluorophenyl)ethanone

To a stirred solution of aldehyde B1.2 (100 mg, 0.27 mmol) in THF (5 mL) was added MeMgBr (0.4 mL, 1.4 M in THF/toluene, 0.56 mmol) and the reaction mixture was stirred at room temperature for 30 min. The reaction mixture was quenched with aq. NH4Cl and extracted with CH2Cl2 (×2). The combined organic layers were dried over sodium sulfate and concentrated in vacuo to give 2-(2,6-difluorophenyl)-1-(4-(5-(1-hydroxyethyl)-2,6-dimethylpyrimidin-4-yl)piperidin-1-yl)ethanone (110 mg, quant., 0.27 mmol), which was directly used for the next step by dissolving it in CH2Cl2 (6 mL) and then adding Dess-Martin periodinane (172 mg, 0.41 mmol). The reaction mixture was stirred at room temperature for 2 h, then diluted with aq. sodium bicarbonate and extracted with CH2Cl2 (×2). The combined organic layers were dried over sodium sulfate, concentrated in vacuo, and the residue was purified by flash chromatography to give ketone B1.3 (91 mg, 88%).


Compound B1.4

A mixture of B1.3 (91 mg, 0.23 mmol) and O-(3-(trifluoromethyl)phenyl)hydroxylamine (82 mg, 0.46 mmol) in EtOH (8 mL) was treated with 2 drops of concentrated HCl and the reaction mixture was stirred at 50° C. for 4 days. 30-40% conversion was observed on LC-MS. The reaction mixture was diluted with aq. sodium bicarbonate and extracted with CH2Cl2 (×3). The combined organic layer was dried over sodium sulfate, concentrated in vacuo, and the residue was purified by flash chromatography to afford B1.4 as an inseparable 3:1 mixture of E/Z isomers as a white powder after lyophilization (19 mg, 15%). Data for major isomer (E): Analytical HPLC: retention time=22.368 min, 98%. 1H-NMR (400 MHz, CDCl3): δ 7.48-7.44 (m, 2H), 7.36-7.32 (m, 2H), 7.26-7.19 (m, 1H), 6.92-6.87 (m, 2H), 4.75 (d, 1H), 4.11 (d, 1H), 3.74 (d, 2H), 3.21-3.14 (m, 1H), 2.96-2.87 (m, 1H), 2.80 (s, 3H), 2.68-2.61 (m, 1H), 2.57 (s, 3H), 2.42 (s, 3H), 2.10-1.95 (m, 2H), 1.87-1.75 (m, 2H). MS (EI) for C28H27F5N4O2. found 547.1 (MH+).


Compound B2—(1Z)-1-(4-{1-[(2,6-Difluorophenyl)acetyl]piperidin-4-yl}-2,6-dimethylpyrimidin-5-yl)ethanone 0-[2-(trifluoromethyl)pyridin-4-yl]oxime

Compound B2 was synthesized from B1.3 in the same manner as Compound B1. In the case of Compound B2, a 10:1 mixture of Z/E isomers was recovered. Data for major isomer (Z): Analytical HPLC: retention time=19.692 min, 99%. 1H-NMR (400 MHz, CDCl3): δ 8.57 (t, 1H), 7.47 (d, 1H), 7.24-7.13 (m, 2H), 6.92-6.87 (m, 2H), 4.80-4.66 (m, 1H), 4.16-4.03 (m, 1H), 3.75 (s, 1H), 3.72 (d, 1H), 3.24-3.17 (m, 1H), 3.12-3.05 (m, 1H), 2.80 (s, 3H), 2.69-2.63 (m, 1H), 2.45 (s, 3H), 2.38 (s, 3H), 2.18-1.84 (m, 2H), 1.78-1.69 (m, 2H). MS (EI) for C27H26F5N5O2. found 548.0 (MH+).


Compound B3—(E)-2-(2,6-Difluorophenyl)-1-(4-(2-methyl-5-(1-(3-(trifluoromethyl)phenoxyimino)ethyl)pyrimidin-4-yl)piperidin-1-yl)ethanone
B3.1: 1-(4-(5-Acetyl-2-methylpyrimidin-4-yl)piperidin-1-yl)-2-(2,6-difluorophenyl)ethanone

B3.1 was synthesized from A1.5 in the same manner that B1.3 was synthesized from B1.1.


Compound B3

To a stirred solution of B3.1 (112 mg, 0.30 mmol) and O-(3-(trifluoromethyl)phenylhydroxylamine (54 mg, 0.30 mmol) in EtOH (5 mL) was added 2 drops of cone. HCl and the reaction mixture was stirred at room temperature for 4 h. The reaction mixture was diluted with EtOAc, washed with aq. sodium bicarbonate, concentrated in vacuo, and the residue was purified by flash chromatography (hexanes/methyl t-butylether/CH2Cl2=4/3/3) to give Compound B3 (49 mg, 36%) as a white powder after lyophilization. Analytical HPLC: retention time=23.664 min, 98%. 1H-NMR (400 MHz, CDCl3): δ 8.57 (s, 1H), 7.49 (s, 1H), 7.45 (t, 1H), 7.36 (dd, 1H), 7.32 (d, 1H), 7.24-7.19 (m, 1H), 6.93-6.86 (m, 2H), 4.75 (d, 1H), 4.12 (d, 1H), 3.75 (d, 2H), 3.31-3.23 (m, 1H), 3.22-3.15 (m, 1H), 2.75 (s, 3H), 2.69-2.61 (m, 1H), 2.48 (s, 3H), 2.14-1.95 (m, 2H), 1.92-1.79 (m, 2H). MS (EI) for C27H25F5N4O2. found 533.0 (MH+).


Compound B4—(Z)-2-(2,6-Difluorophenyl)-1-(4-(2-methyl-5-(1-(3-(trifluoromethyl)phenoxyimino)ethyl)pyrimidin-4-yl)piperidin-1-yl)ethanone

Compound B4 is the Z isomer of Compound B3, recovered as a second compound from the same reaction that generated Compound B3 during the purification process by flash chromatography. Analytical HPLC: retention time=22.856 min, 95%. 1H-NMR (400 MHz, CDCl3): δ 8.38 (s, 1H), 7.41-7.38 (m, 2H), 7.29 (d, 1H), 7.24-7.18 (m, 2H), 6.92-6.86 (m, 2H), 4.70 (d, 1H), 4.06 (d, 1H), 3.72*d, 2H), 3.11-3.04 (m, 1H), 2.77 (s, 3H), 2.76-2.70 (m, 1H), 2.60-2.54 (m, 1H), 2.37 (s, 3H), 2.10-1.90 (m, 2H), 1.77-1.67 (m, 2H). MS (EI) for C27H25F5N4O2. found 533.0 (MH+).


Compounds B5-B22

Compounds B5 to B22 were prepared from methods analogous to those used to prepare Compounds B3 and B4 utilizing appropriate reagent replacements.

















HPLC Retention
Mass Reported


Cpd
Chemical Name
Time (min)
(MH+)







B5
(E)-1-(4-(5-(1-((3-chlorophenoxy)imino)ethyl)-2-
22.86
499.0



methylpyrimidin-4-yl)piperidin-1-yl)-2-(2,6-



difluorophenyl)ethanone


B6
(Z)-1-(4-(5-(1-((3-chlorophenoxy)imino)ethyl)-2-
 4.36*
499.0



methylpyrimidin-4-yl)piperidin-1-yl)-2-(2,6-



difluorophenyl)ethanone


B7
(E)-2-(2,6-difluorophenyl)-1-(4-(2-methyl-5-(1-
24.91
549.0



((3-



(trifluoromethoxy)phenoxy)imino)ethyl)pyrimidin-



4-yl)piperidin-1-yl)ethanone


B8
(Z)-2-(2,6-difluorophenyl)-1-(4-(2-methyl-5-(1-
24.40
549.0



((3-



(trifluoromethoxy)phenoxy)imino)ethyl)pyrimidin-



4-yl)piperidin-1-yl)ethanone


B9
(E)-2-(2,6-difluorophenyl)-1-(4-(5-(1-((3,5-
26.69
493.0



dimethylphenoxy)imino)ethyl)-2-



methylpyrimidin-4-yl)piperidin-1-yl)ethanone


B10
(Z)-2-(2,6-difluorophenyl)-1-(4-(5-(1-((3,5-
26.35
493.0



dimethylphenoxy)imino)ethyl)-2-



methylpyrimidin-4-yl)piperidin-1-yl)ethanone


B11
(E)-2-(2,6-difluorophenyl)-1-(4-(2-methyl-5-(1-
23.81
479.0



((m-tolyloxy)imino)ethyl)pyrimidin-4-



yl)piperidin-1-yl)ethanone


B12
(E)-1-(4-(5-(1-((3-chloro-5-
23.26
517.0



fluorophenoxy)imino)ethyl)-2-methylpyrimidin-



4-yl)piperidin-1-yl)-2-(2,6-



difluorophenyl)ethanone


B13
(E)-4-(((1-(4-(1-(2-(2,6-
17.39
491.0



difluorophenyl)acetyl)piperidin-4-yl)-2-



methylpyrimidin-5-



yl)ethylidene)amino)oxy)picolinonitrile


B14
(E)-2-(2,6-difluorophenyl)-1-(4-(2-methyl-5-(1-
19.55
534.0



(((2-(trifluoromethyl)pyridin-4-



yl)oxy)imino)ethyl)pyrimidin-4-yl)piperidin-1-



yl)ethanone


B15
(E)-1-(4-(5-(1-(((2-chloropyridin-4-
18.01 (Z isomer)
500.0



yl)oxy)imino)ethyl)-2-methylpyrimidin-4-
18.62 (E isomer)



yl)piperidin-1-yl)-2-(2,6-difluorophenyl)ethanone


B16
(E)-2-(2,6-difluorophenyl)-1-(4-(5-(1-((3-
23.29
483.0



fluorophenoxy)imino)ethyl)-2-methylpyrimidin-



4-yl)piperidin-1-yl)ethanone


B17
(E)-2-(2,6-difluorophenyl)-1-(4-(5-(1-((5-fluoro-
22.76
497.0



2-methylphenoxy)imino)ethyl)-2-



methylpyrimidin-4-yl)piperidin-1-yl)ethanone


B18
(E)-2-(2,6-difluorophenyl)-1-(4-(5-(1-((2,5-
23.69
493.0



dimethylphenoxy)imino)ethyl)-2-



methylpyrimidin-4-yl)piperidin-1-yl)ethanone


B19
(E)-2-(2,6-difluorophenyl)-1-(4-(2-methyl-5-(1-
20.20
534.0



(((6-(trifluoromethyl)pyridin-2-



yl)oxy)imino)ethyl)pyrimidin-4-yl)piperidin-1-



yl)ethanone


B20
(E)-2-(2,6-difluorophenyl)-1-(4-(2-methyl-5-(1-
18.88
535.0



(((2-(trifluoromethyl)pyrimidin-4-



yl)oxy)imino)ethyl)pyrimidin-4-yl)piperidin-1-



yl)ethanone


B21
(E)-2-(2,6-difluorophenyl)-1-(4-(5-(1-((3-
22.86
495.0



methoxyphenoxy)imino)ethyl)-2-



methylpyrimidin-4-yl)piperidin-1-yl)ethanone


B22
(E)-2-(2,6-difluorophenyl)-1-(4-(5-(1-((2,3-
23.35
493.1



dimethylphenoxy)imino)ethyl)-2-



methylpyrimidin-4-yl)piperidin-1-yl)ethanone









HPLC Conditions Used to Determine Retention Times:



  • Unless otherwise noted: YMC C18, 5μ 150×4.6 mm column, gradient 10% to 90% MeCN/H2O, in the presence of 0.1% TFA, 25 min gradient time, 27 min total run time at 1.5 mL/min flow rate, λ=254 nM

  • * Phenomenex, Gemini, 50×4.6 mm, 5μ column, gradient 10% to 90% MeCN/H2O, in the presence of 0.1% TFA, 5 min gradient time, 6 min total run time at 3.0 mL/min flow rate, λ=254 nM



Compound B23—(1Z)-1-(4-{1-[(2,6-Difluorophenyl)acetyl]piperidin-4-yl}-2-methylpyrimidin-5-yl)-2-hydroxyethanone O-[2-(trifluoromethyl)pyridin-4-yl]oxime
B23.1: tert-Butyl 4-(5-acetyl-2-methylpyrimidin-4-yl)piperidine-1-carboxylate

To a stirred mixture of acid A106.1 (3.07 g, 9.55 mmol), N,O-dimethylhydroxylamine hydrogenchloride (1.12 g, 11.5 mmol), and Et3N (5.32 mL, 38.2 mmol) in dimethylacetamide (DMA) (30 mL) was added HATU (4.36 g, 11.5 mmol) and the reaction mixture was stirred at room temperature for 1 h. The reaction mixture was diluted with EtOAc, washed with aq. sodium bicarbonate, brine, dried over sodium sulfate and concentrated in vacuo to give the corresponding Weinreb amide, which was directly used for the next step. The crude Weinreb amide was dissolved in THF (30 mL) and the resulting solution was treated with MeMgBr (27.3 mL, 1.4 M in THF/toluene, 38.2 mmol) at room temperature. After stirring for 2 h, the reaction mixture was cooled to 0° C., quenched with aq. NH4Cl and extracted with EtOAc (×2). The combined organic layers were dried over sodium sulfate, concentrated in vacuo, and the residue was purified by flash chromatography to give ketone B23.1 (2.76 g, 90% in 2 steps).


B23.2: tert-Butyl 4-(5-(2-acetoxyacetyl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate

To a stirred solution of B23.1 (639 mg, 2.0 mmol) in THF (20 mL) was added lithium bis(trimethylsilyl)amide (LHMDS) (3.0 mL, 1.0 M in THF, 3.0 mmol) at 0° C. and the reaction mixture was stirred for 30 min. To this resulting solution was added TMSCl (383 μL, 3.0 mmol). After stirring for 3 h, the reaction mixture was diluted with aq. sodium bicarbonate and extracted with EtOAc (×2). The combined organic layers were dried over sodium sulfate and concentrated in vacuo to give the corresponding trimethylsilylenol ether, which was directly used for the next step. The crude trimethylsilylenol ether was dissolved in THF (20 mL) and the solution was treated with NaHCO3 (252 mg, 3.0 mmol) followed by NBS (356 mg, 2.0 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 30 min. The reaction mixture was diluted with aq. sodium bicarbonate and extracted with EtOAc (×2). The combined organic layers were dried over sodium sulfate, concentrated in vacuo, and the residue was purified by flash chromatography to afford the corresponding α-bromoketone (661 mg, 83% in 2 steps). To a stirred solution of this α-bromoketone (398 mg, 1.0 mmol) in DMA (5 mL) was added K2CO3 (294 mg, 3.0 mmol) and the reaction mixture was stirred for 1 h. The reaction mixture was diluted with water and extracted with EtOAc (×2). The combined organic layers were washed with brine, dried over sodium sulfate, concentrated in vacuo, and the residue was purified by flash chromatography to give acetate B23.2 (354 mg, 94%).


B23.3: 2-(4-(1-(2-(2,6-Difluorophenyl)acetyl)piperidin-4-yl)-2-methylpyrimidin-5-yl)-2-oxoethyl acetate

A solution of B23.2 (354 mg, 0.94 mmol) in 1,4-dioxane (10 mL) was treated with HCl (5 mL, 4 M in 1,4-dioxane, 20 mmol) and the reaction mixture was stirred at room temperature overnight. The reaction mixture was concentrated in vacuo to give the corresponding amine HCl salt, which was directly used for the next step. The crude amine HCl salt was dissolved in DMA (10 mL) and treated with Et3N (655 μL, 4.7 mmol) and 2,6-difluorophenylacetic acid (194 mg, 1.13 mmol) followed by HATU (430 mg, 1.13 mmol). After stirring for 30 min at room temperature, the reaction mixture was diluted with EtOAc, washed with aq. sodium bicarbonate, brine, dried over sodium sulfate, concentrated in vacuo, and the residue was purified by flash chromatography to give B23.3 (338 mg, 83%).


B23.4: 2-(2,6-Difluorophenyl)-1-(4-(5-(2-hydroxy-1-(hydroxyimino)ethyl)-2-methylpyrimidin-4-yl)piperidin-1-yl)ethanone

The mixture of B23.3 (338 mg, 0.78 mmol) and hydroxylamine hydrochloride (542 mg, 7.8 mmol) in EtOH (10 mL) was treated with 5 drops of concentrated HCl and the resulting mixture was stirred at room temperature overnight. The reaction mixture was diluted with aq. sodium bicarbonate and extracted with CH2Cl2 (×5). The combined organic layers were dried over sodium sulfate, concentrated in vacuo, and the residue was purified by flash chromatography to afford oxime B23.4 (244 mg, 70%) along with acetylated oxime (44 mg, 14%). The resulting mixture (89 mg, 0.55 mmol) was dissolved in MeOH (5 mL) and treated with K2CO3 to hydrolyze the acetylated oxime (138 mg, 1.0 mmol). After stirring for 1 h at room temperature, the reaction mixture was concentrated in vacuo and the residue was directly purified by flash chromatography to give B23.4 (77 mg, 95%).


Compound B23

A mixture of B23.3 (77 mg, 0.19 mmol) and 4-chloro-2-trifluoromethylpyridine (34 mg, 0.19 mmol) in DMA (4 mL) was treated with K2CO3 (131 mg, 0.95 mmol). After stirring for 24 h at room temperature, additional 4-chloro-2-trifluoromethylpyridine (34 mg, 0.19 mmol) was added to the reaction mixture. After stirring for 48 h at room temperature, the reaction mixture was diluted with water and extracted with EtOAc (×2). The combined organic layer was washed with brine, dried over sodium sulfate, concentrated in vacuo, and the residue was purified by flash chromatography to give Compound B23 (37 mg, 35%) as a white powder after lyophilization. Analytical HPLC: retention time=16.904 min, 99%. 1H-NMR (400 MHz, CDCl3): δ 8.69 (br s, 1H), 8.63 (d, 1H), 7.53 (d, 1H), 7.29 (dd, 1H), 7.26-7.19 (m, 1H), 6.93-6.87 (m, 2H), 5.03 (s, 2H), 4.76 (d, 1H), 4.13 (d, 1H), 3.76 (d, 2H), 3.24-3.17 (m, 1H), 3.12-3.05 (m, 1H), 2.84 (s, 3H), 2.70-2.64 (m, 1H), 2.13-1.84 (m, 4H). MS (EI) for C26H24F5N5O3. found 549.9 (MH+).


Compound B24—(1Z)-1-(4-{1-[(2,6-Difluorophenyl)acetyl]piperidin-4-yl}-2-methylpyrimidin-5-yl)-2-fluoroethanone 0-[2-(trifluoromethyl)pyridin-4-yl]oxime

To a stirred solution of B23 (32 mg, 0.058 mmol) and Et3N (81 μL, 0.58 mmol) in CH2Cl2 (4 mL) was added diethylaminosulfur trifluoride (DAST) dropwise at room temperature. After stirring for 4 h, the reaction mixture was diluted with aq. sodium bicarbonate and extracted with CH2Cl2 (×2). The combined organic layers were dried over sodium sulfate, concentrated in vacuo, and the residue was purified by reverse phase HPLC to afford Compound B24 (8.6 mg, 27%) as a white powder after lyophilization. Analytical HPLC: retention time=19.804 min, 99%. 1H-NMR (400 MHz, CDCl3): δ 8.65 (d, 1H), 8.58 (s, 1H), 7.53 (d, 1H), 7.30 (dd, 1H), 7.26-7.20 (m, 1H), 6.94-6.87 (m, 2H), 5.77 (d, 2H), 4.77 (d, 1H), 4.14 (d, 1H), 3.76 (d, 2H), 3.24-3.17 (m, 1H), 2.98-2.93 (m, 1H), 2.80 (s, 3H), 2.70-2.63 (m, 1H), 2.16-1.96 (m, 2H), 1.90-1.79 (m, 2H). MS (EI) for C26H23F6N5O2. found 552.1 (MH+).


Compounds B25-B28

Compounds B25 to B28 were prepared from methods analogous to those used to prepare Compounds B23 and B24 utilizing appropriate reagent replacements.

















HPLC
Mass




Retention
Report-




Time
ed


Cpd
Chemical Name
(min)
(MH+)







B25
(Z)-2-(2,6-difluorophenyl)-1-(4-(5-(2-
16.29
551.1



hydroxy-1-(((2-(trifluoromethyl)pyrimidin-



4-yl)oxy)imino)ethyl)-2-methylpyrimidin-4-



yl)piperidin-1-yl)ethanone


B26
(E)-2-(2,6-difluorophenyl)-1-(4-(5-(2-
16.14
551.1



hydroxy-1-(((2-(trifluoromethyl)pyrimidin-



4-yl)oxy)imino)ethyl)-2-methylpyrimidin-4-



yl)piperidin-1-yl)ethanone


B27
(Z)-2-(2,6-difluorophenyl)-1-(4-(5-(2-
19.37
553.1



fluoro-1-(((2-(trifluoromethyl)pyrimidin-4-



yl)oxy)imino)ethyl)-2-methylpyrimidin-4-



yl)piperidin-1-yl)ethanone


B28
(Z)-2-(2,6-difluorophenyl)-1-(4-(5-(2-
22.56
549.0



hydroxy-1-((3-



(trifluoromethyl)phenoxy)imino)ethyl)-2-



methylpyrimidin-4-yl)piperidin-1-



yl)ethanone










HPLC conditions used to determine retention times: YMC C18, 5μ 150×4.6 mm column, gradient 10% to 90% MeCN/H2O, in the presence of 0.1% TFA, 25 min gradient time, 27 min total run time at 1.5 mL/min flow rate, λ=254 nM


Compound B29—(Z)-2-(2,6-Difluorophenyl)-1-(4-(2-methyl-5-(2,2,2-trifluoro-1-(3-fluorophenoxyimino)ethyl)pyrimidin-4-yl)piperidin-1-yl)ethanone
B29.1: 1-(4-(1-(2-(2,6-Difluorophenyl)acetyl)piperidin-4-yl)-2-methylpyrimidin-5-yl)-2,2,2-trifluoroethanone

To a stirred solution of A1.4 (530 mg, 1.31 mmol) and trimethyl(trifluoromethyl)silane (280 mg, 1.97 mmol) in toluene (5 mL) at −78° C. was added Bu4NF (65 μL, 1M in THF, 0.065 mmol). The reaction mixture was warmed slowly to −5° C. for 40 min and then 2N HCl (1.2 mL) was added. After stirring for 1 h at room temperature, EtOAc (5 mL) was added. The organic layer was separated, concentrated, dissolved in THF (5 mL), and transferred to the aq. layer. After stirring for 2 h, water (2 mL) was added and the resulting solution was extracted with EtOAc (3×3 mL). The combined organic layers were concentrated and purified by silica gel column chromatography (Hexane/EtOAc=1:1→1:2) to give B29.1 (205 mg, 37%) as a white foam. MS (EI) for C20H18F5N3O2. found 428.0 (MH+).


Compound B29

To a stirred solution of B29.1 (80.0 mg, 0.187 mmol), O-(3-fluorophenyl)hydroxylamine (48.0 mg, 0.374 mmol) and EtOH (1.5 mL) at room temperature was added a catalytic amount of cone HCl. After stirring for 41 h at 80° C., aq. sat. NaHCO3 (2 mL) and water (1 mL) were added and the resulting solution was extracted with EtOAc (3×3 mL). The combined organic layers were concentrated and purified by silica gel column chromatography (hexane/EtOAc=3:1→5:2) to give Compound B29 (8.0 mg, a mixture of E/Z=5:2, 8%) as a pale red powder after lyophilization. 1H-NMR (400 MHz, CDCl3, geometric mixture): δ 8.56 and 8.50 (two of s, 1H, 1:2.8), 7.32 (m, 1H), 7.22 (m, 1H), 7.04-6.84 (m, 5H), 4.75 (m, 1H), 4.10 (m, 1H), 3.74 (m, 2H), 3.23-2.47 (m, 3H), 2.81 and 2.79 (two of s, 3H, 2.1:1), 2.12-1.75 (m, 4H). MS (EI) for C26H22F6N4O2. found 537.0 (MH+). Analytical HPLC, ret. time=21.632 min (major) and 21.808 min (minor), incomplete separation (gradient 10% to 100% MeCN/H2O), 97% purity.


Compound B30—(E)-4-(1-(2-(2,6-Difluorophenyl)acetyl)piperidin-4-yl)-2-methylpyrimidine-5-carbaldehyde O-3-(trifluoromethyl)phenyl oxime
B30.1: 4-(1-(2-(2,6-Difluorophenyl)acetyl)piperidin-4-yl)-2-methylpyrimidine-5-carbaldehyde

B30.1 was synthesized from A1.5 in the same manner that B1.2 was synthesized from B1.1


Compound B30

To a stirred solution of B30.1 (40.0 mg, 0.111 mmol), O-(3-(trifluoromethyl)phenyl)hydroxylamine (29.5 mg, 0.167 mmol) and EtOH (1 mL) at room temperature was added a catalytic amount of conc HCl. After stirring for 3 h, aq. sat. NaHCO3 (3 mL) was added and the resulting solution was extracted with EtOAc (3×3 mL). The combined organic layers were concentrated and purified by silica gel column chromatography (hexane/EtOAc=4:3→2:3) to give Compound B30 (39.6 mg, 69%) as a white powder after lyophilization. 1H-NMR (400 MHz, CDCl3): δ 8.85 (s, 1H), 8.63 (s, 1H), 7.49 (m, 2H), 7.37 (m, 2H), 7.23 (m, 1H), 6.91 (t, 2H), 4.79 (d, 1H), 4.18 (d, 1H), 3.78 (s, 2H), 3.48 (tt, 1H), 3.29 (td, 1H), 2.78 (m, 1H), 2.77 (s, 3H), 2.10 (qd, 1H), 1.94 (m, 3H). MS (EI) for C26H23F5N4O2. found 519.0 (MH+). Analytical HPLC, ret. time=23.248 min, 98% purity.


Compound B31—4-{1-[(2,6-Difluorophenyl)acetyl]piperidin-4-yl}-2,6-dimethylpyrimidine-5-carbaldehyde O-[3-(trifluoromethyl)phenyl]oxime

To a stirred mixture of aldehyde B1.2 (46 mg, 0.123 mmol) and 3-trifluoromethylphenylhydroxylamine (33 mg, 0.186 mmol) in EtOH (6 mL) was added 2 drops of concentrated HCl and the reaction mixture was stirred at room temperature overnight. The reaction mixture was diluted with aq. sodium bicarbonate and extracted with CH2Cl2 (×3). The combined organic layers were dried over sodium sulfate, concentrated in vacuo, and the residue was purified by flash chromatography to give Compound B31 (41 mg, 63%) as a white powder after lyophilization. Analytical HPLC: retention time=22.624 min, 99%. 1H-NMR (400 MHz, CDCl3): δ 8.77 (s, 1H), 7.50-7.46 (m, 2H), 7.36-7.34 (m, 2H), 7.26-7.19 (m, 1H), 6.93-6.87 (m, 2H), 4.77 (d, 1H), 4.15 (d, 1H), 3.76 (d, 2H), 3.46-3.39 (m, 1H), 3.27-3.21 (m, 1H), 2.75-2.68 (m, 1H), 2.71 (s, 3H), 2.66 (s, 3H), 2.15-1.82 (m, 4H). MS (EI) for C27H25F5N4O2. found 533.0 (MH+).


Compound 32—(1Z)-1-(4-{1-[(2,6-Difluorophenyl)acetyl]piperidin-4-yl}-2-methylpyrimidin-5-yl)-2,2-difluoroethanone O-[2-(trifluoromethyl)pyridin-4-yl]oxime

To a stirred solution of B23 (99 mg, 0.18 mmol) in CH2Cl2 (5 mL) was added Dess-Martin periodinane (153 mg, 0.36 mmol) and the reaction mixture was stirred at room temperature for 2 h. The reaction mixture was diluted with aq. sodium bicarbonate and extracted with CH2Cl2 (×3). The combined organic layers were dried over sodium sulfate, concentrated in vacuo, and the residue was purified by flash chromatography to give the corresponding aldehyde, (Z)-2-(4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-yl)-2-methylpyrimidin-5-yl)-2-(2-(trifluoromethyl)pyridin-4-yloxyimino)acetaldehyde (79 mg, 80%). A solution of the aldehyde (44 mg, 0.080 mmol) in CH2Cl2 (5 mL) was treated with DAST (39 mg, 0.24 mmol) and the reaction mixture was stirred at room temperature for 4 h. The reaction mixture was diluted with aq. sodium bicarbonate and extracted with CH2Cl2 (×2). The combined organic layer was dried over sodium sulfate, concentrated in vacuo, and the residue was purified by reverse phase HPLC to afford Compound B32 (21 mg, 46%) as a white powder after lyophilization. Analytical HPLC: retention time=16.772 min, 98%. 1H-NMR (400 MHz, CDCl3): δ 8.69 (d, 1H), 8.60 (s, 1H), 7.57 (d, 1H), 7.34 (dd, 1H), 7.26-7.20 (m, 1H), 7.21 (t, 1H), 6.94-6.87 (m, 2H), 4.77 (d, 1H), 4.13 (d, 1H), 3.76 (d, 2H), 3.22-3.15 (m, 1H), 3.01-2.94 (m, 1H), 2.81 (s, 3H), 2.68-2.61 (m, 1H), 2.15-1.96 (m, 2H), 1.88-1.78 (m, 2H). MS (EI) for C26H22F7N5O2. found 570.1 (MH+).


Compound B33—(E)-4-(1-(2-(2,6-Difluorophenyl)acetyl)-3,3-difluoropiperidin-4-yl)-2-methylpyrimidine-5-carbaldehyde O-3-(trifluoromethyl)phenyl oxime
B33.1: 1-Benzyl-3,3-difluoro-4-methylenepiperidine

A mixture of methyl triphenylphosphonium bromide (16.6 g, 46.6 mmol), tert-BuOK (4.48 g, 39.9 mmol) and THF (120 mL) was stirred for 30 min at 40° C. The reaction mixture was cooled down to room temperature and 1-benzyl-3,3-difluoropiperidin-4-one (3.00 g, 13.3 mmol, Bioorganic Med. Chem. Lett. 2011, 21, 6409-6413) in THF (15 mL) was added. After stirring for 16 h at room temperature, hexane (75 mL) and water (30 mL) were added. The organic layer was separated, concentrated and dissolved in EtOAc/Hexane (1:10, 75 mL). The resulting solution was washed with water (6 mL). Both aq. layers were combined and extracted with EtOAc/Hexane (1:10, 2×30 mL). All organic layers were combined, concentrated and purified by silica gel column chromatography (hexane/EtOAc=25:1) to give B33.1 (2.54 g, 86%) as a clear oil. MS (EI) for C13H15F2N. found 224.1 (MH+).


B33.2: (1-Benzyl-3,3-difluoropiperidin-4-yl)methanol

To a stirred solution of B33.1 (3.04 g, 13.6 mmol) in THF (50 mL) at room temperature was added BH3.THF (27 mL, 1M in THF, 27 mmol). After stirring for 130 min at 70° C., the reaction mixture was cooled to 0° C. and 2N NaOH (41 mL) and 30% H2O2 (41 mL) were added in sequence. The resulting mixture was stirred for 15 min at room temperature, stirred for 16 h at 40° C., and cooled to room temperature. Water (30 mL) was added and the resulting solution was extracted with EtOAc (4×30 mL). The combined organic layers were concentrated and purified by silica gel column chromatography (Hexane/EtOAc=3:1→7:4) to give B33.2 (2.0 g, 61%) as a clear oil. MS (EI) for C13H17F2NO. found 242.1 (MH+).


B33.3: 1-Benzyl-3,3-difluoropiperidine-4-carboxylic acid

To a stirred solution of B33.2 (2.0 g, 8.29 mmol) in acetone (30 mL) at 0° C. was added Jones reagent (5.1 mL, 8N, 40.8 mmol). After stirring for 30 min at room temperature, iPrOH (3 mL) and water (24 mL) were added in sequence. The resulting mixture was washed with hexane (2×10 mL). The resulting aq. layer was neutralized with 6N NaOH and extracted with EtOAc (4×15 mL). The combined organic layers were dried over magnesium sulfate and concentrated to give B33.3 (1.57 g, 45%) as a brown oil. MS (EI) for C13H15F2NO2. found 256.1 (MH+).


B33.4: Ethyl 4-(1-benzyl-3,3-difluoropiperidin-4-yl)-2-methylpyrimidine-5-carboxylate

To a stirred solution of B33.3 (750 mg, 2.94 mmol) in THF (6 mL) at 0° C. was slowly added 1,1′-carbonyldiimidazole (CDI) (715 mg, 4.41 mmol) in THF (12 mL) over 30 min. After stirring for 3 h at room temperature, the resulting solution was divided to three equal portions (three portions of the reaction A).


Three same reactions were carried out by the following procedures: To a stirred solution of ethyl potassium malonate (417 mg, 2.45 mmol) in THF (8 mL) at 0° C. were added Et3N (0.51 mL, 3.7 mmol) and MgCl2 (257 mg, 2.70 mmol). After stirring for 3 h at room temperature, one portion of the reaction A was slowly added for 10 min at 0° C. The resulting mixture was stirred for 30 min at room temperature, stirred for additional 64 h at 30° C., and cooled down to 0° C. Saturated aq. citric acid (8 mL) was added and the resulting solution was extracted with EtOAc (3×10 mL).


The combined organic layers from three reactions were washed with water (10 ml). The aq. layer was extracted with EtOAc (3×5 mL). The combined organic layers were dried over magnesium sulfate, concentrated, and purified by silica gel column chromatography (hexane/EtOAc=4:1→3:1) to give B33.4 (320 mg, crude) as a clear oil. MS (EI) for C17H21F2NO3. found 326.1 (MH+).


B33.5: Ethyl 4-(1-benzyl-3,3-difluoropiperidin-4-yl)-2-methylpyrimidine-5-carboxylate

A mixture of the B33.4 and DMF/DMA (4 mL) was stirred for 5 h at room temperature and then concentrated under vacuum. MS (EI) for C20H26F2N2O3. found 381.1 (MH+). To a stirred solution of the resulting residue, acetamidine.HCl (186 mg, 1.97 mmol) and EtOH (8 mL) at 0° C. was added EtONa (0.55 mL, 2.68M in EtOH, 1.48 mmol). After stirring for 1 h at room temperature, aq. sat. NH4Cl (8 mL) was added at 0° C. and the resulting solution was extracted with EtOAc (3×10 mL). The combined organic layers were concentrated, dissolved in EtOAc (10 mL), and washed with water (1 mL). The aq. layer was extracted with EtOAc (3×2 mL). The combined organic layers were concentrated and purified by silica gel column chromatography (hexane/EtOAc=7:1→5:1) to give B33.5 (180 mg, 16%) as a clear oil. MS (EI) for C20H23F2N3O2. found 376.0 (MH+).


B33.6: Ethyl 4-(1-(2-(2,6-Difluorophenyl)acetyl)-3,3-difluoropiperidin-4-yl)-2-methylpyrimidine-5-carboxylate

A mixture of B33.5 (30.0 mg, 0.0799 mmol), Pd/C (17 mg, 10 wt. %, 0.016 mmol) and MeOH (2 mL) was stirred for 1 h at room temperature under a balloon of hydrogen. The mixture was filtered through Celite and the filtrate was concentrated. The residue was dissolved in EtOAc (2 mL) and the resulting solution was filtered and concentrated. MS (EI) for C13H17F2N3O2. found 286.0 (MH+). To a stirred solution of the resulting residue, 2-(2,6-difluorophenyl)acetic acid (20.7 mg, 0.120 mmol), HATU (61.0 mg, 0.160 mmol) and DMF (0.8 mL) was added DIEA (40 μL, 0.24 mmol). After stirring for 3.5 h at room temperature, aq. sat. NH4Cl (3 mL) was added and the resulting solution was extracted with EtOAc (3×2 mL). The combined organic layers were concentrated and purified by silica gel column chromatography (hexane/EtOAc=2:1→3:2) to give B33.6 (34 mg, 97%) as a yellow oil. MS (EI) for C21H21F4N3O3. found 440.2 (MH+).


B33.7: 4-(1-(2-(2,6-Difluorophenyl)acetyl)-3,3-difluoropiperidin-4-yl)-2-methylpyrimidine-5-carbaldehyde

To a stirred solution of B33.6 (30.0 mg, 0.0683 mmol) in THF (1 mL) at 0° C. was added LiAlH4 (50 μL, 1M in THF, 0.055 mmol). After stirring for 1.5 h at 0° C., water (0.01 mL), 15% NaOH (0.01 mL) and water (0.02 mL) were added in sequence at room temperature with vigorous stirring. The resulting mixture was stirred for additional 1.5 h at room temperature, concentrated and purified by silica gel column chromatography (EtOAc/7N NH3 in MeOH=40:1→25:1) to give 1-(3,3-difluoro-4-(5-(hydroxymethyl)-2-methylpyrimidin-4-yl)piperidin-1-yl)-2-(2,6-difluorophenyl)ethanone (11 mg, 41%) as a clear oil. MS (EI) for C19H19F4N3O2. found 398.0 (MH+).


To a stirred solution of 1-(3,3-difluoro-4-(5-(hydroxymethyl)-2-methylpyrimidin-4-yl)piperidin-1-yl)-2-(2,6-difluorophenyl)ethanone (11.0 mg, 0.0277 mmol) in CH2Cl2 (0.5 mL) at room temperature was added Dess-Martin periodinane (23.0 mg, 0.0544 mmol).


After stirring for 2 h, water (2 mL) was added and the resulting solution was extracted with EtOAc (3×1.5 mL). The combined organic layers were concentrated and purified by silica gel column chromatography (Hexane/EtOAc=2:3) to give B33.7 (11 mg, quant) as a clear oil. MS (EI) for C19H17F4N3O2. found 396.0 (MH+).


Compound B33

To a stirred solution of B33.7 (11.0 mg, 0.0277 mmol), O-(3-(trifluoromethyl)phenyl)hydroxylamine (9.8 mg, 0.055 mmol) and EtOH (1 mL) at room temperature was added a catalytic amount of cone HCl. After stirring for 17 h, aq. sat. NaHCO3 (1 mL) was added and the resulting solution was extracted with EtOAc (2×2 mL). The combined organic layers were concentrated and purified by silica gel column chromatography (hexane/EtOAc=2:1) to give Compound B33 (12 mg, 78%) as a white solid after lyophilization. 1H-NMR (400 MHz, CDCl3 8.98 (d, 1H), 8.65 (d, 1H), 7.48 (m, 2H), 7.38 (m, 2H), 7.26 (m, 1H), 6.92 (t, 2H), 4.65-4.37 (m, 1H), 4.24 (m, 1H), 4.04 (m, 1H), 3.86-3.64 (m, 1H), 3.81 (s, 2H), 3.53 (m, 1H), 2.81 (s, 3H), 2.65-2.39 (m, 1H), 2.08 (m, 1H). MS (EI) for C26H21F7N4O2. found 554.9 (MH+). Analytical HPLC, ret. time=21.500 min (gradient 10% to 100% MeCN/H2O), 95% purity.


Compound B34—(E)-1-(3,3-Difluoro-4-(2-methyl-5-(1-(2-(trifluoromethyl)pyridin-4-yloxyimino)ethyl)pyrimidin-4-yl)piperidin-1-yl)-2-(2,6-difluorophenyl)ethanone
B34.1: 4-(1-Benzyl-3,3-difluoropiperidin-4-yl)-2-methylpyrimidine-5-carbaldehyde

To a stirred solution of B33.5 (36.0 mg, 0.0959 mmol) in THF (1 mL) at 0° C. was added LiAlH4 (50 μL, 1M in THF, 0.055 mmol). After stirring for 80 min at 0° C., water (0.01 mL) and 15% NaOH (0.01 mL) were added in sequence at room temperature with vigorous stirring. The resulting mixture was stirred for additional 30 min and EtOAc (2 mL) was added. The resulting mixture was filtered through Celite and concentrated to give the alcohol (4-(1-benzyl-3,3-difluoropiperidin-4-yl)-2-methylpyrimidin-5-yl)methanol. MS (EI) for C18H21F2N3O. found 334.0 (MH+). To a stirred solution of the alcohol in CH2Cl2 (2 mL) at room temperature was added Dess-Martin periodinane (81.4 mg, 0.192 mmol). After stirring for 1.5 h, water (2 mL) was added and the resulting solution was extracted with EtOAc (4 mL, 3×2 mL). The combined organic layers were concentrated and purified by silica gel column chromatography (hexane/EtOAc=7:3→2:1) to give B34.1 (19 mg, 60%) as a clear oil. MS (EI) for C18H19F2N3O. found 332.0 (MH+).


B34.2: 1-(4-(1-Benzyl-3,3-difluoropiperidin-4-yl)-2-methylpyrimidin-5-yl)ethanone

To a stirred solution of B34.1 (36.0 mg, 0.109 mmol) in THF (1 mL) at 0° C. was added methylmagnesium bromide (0.16 mL, 1.4M in Toluene/THF (3:1), 0.22 mmol). After stirring for 50 min at room temperature, aq. sat. NH4Cl (3 mL) was added and the resulting solution was extracted with EtOAc (3×2 mL). The combined organic layers were dried over magnesium sulfate and concentrated to give the alcohol 1-(4-(1-benzyl-3,3-difluoropiperidin-4-yl)-2-methylpyrimidin-5-yl)ethanol. MS (EI) for C19H23F2N3O. found 348.1 (MH+). To a stirred solution of the alcohol in CH2Cl2 (2 mL) at room temperature was added Dess-Martin periodinane (92.5 mg, 0.218 mmol). After stirring for 70 min, water (3 mL) was added and the resulting solution was extracted with EtOAc (5 mL, 3×2 mL). The combined organic layers were concentrated and purified by silica gel column chromatography (hexane/EtOAc=2:1) to give B34.2 (28 mg, 74%) as a clear oil. MS (EI) for C19H21F2N3O. found 346.1 (MH+).


B34.3: 1-(4-(5-Acetyl-2-methylpyrimidin-4-yl)-3,3-difluoropiperidin-1-yl)-2-(2,6-difluorophenyl)ethanone

A mixture of B34.2 (28.0 mg, 0.0811 mmol), Pd/C (43 mg, 10 wt. %, 0.041 mmol) and MeOH (2 mL) was stirred for 20 h at room temperature under a balloon of hydrogen. The mixture was filtered through Celite and the filtrate was concentrated. The residue was dissolved in MeOH (0.4 mL) and EtOAc (2 mL), and the resulting solution was filtered and concentrated to give the free amine 1-(4-(3,3-difluoropiperidin-4-yl)-2-methylpyrimidin-5-yl)ethanone. MS (EI) for C12H15F2N3O. found 256.0 (MH+). To a stirred solution of the free amine, 2-(2,6-difluorophenyl)acetic acid (18.1 mg, 0.105 mmol), HATU (46.3 mg, 0.122 mmol) and DMF (0.8 mL) was added DIEA (40 μL, 0.24 mmol). After stirring for 1.5 h at room temperature, water (3 mL) was added and the resulting solution was extracted with EtOAc (3×2 mL). The combined organic layers were concentrated and purified by silica gel column chromatography (hexane/EtOAc=3:5) to give B34.3 (17.5 mg, 53%) as a clear oil. MS (EI) for C20H19F4N3O2. found 410.0 (MH+).


B34.4: (E)-1-(3,3-Difluoro-4-(5-(1-(hydroxyimino)ethyl)-2-methylpyrimidin-4-yl)piperidin-1-yl)-2-(2,6-difluorophenyl)ethanone

To a stirred solution of B34.3 (17.0 mg, 0.0415 mmol) in EtOH (0.5 mL) were added hydroxylamine.HCl (8.7 mg, 0.13 mmol) and a catalytic amount of cone HCl. After stirring for 15 h at 50° C., aq. sat. NaHCO3 (2 mL) was added and the resulting solution was extracted with EtOAc (3×2 mL). The combined organic layers were concentrated and purified by silica gel column chromatography (hexane/EtOAc=3:5) to give B34.4 (16 mg, a mixture of E/Z=3.8:1, 91%) as a clear oil. MS (EI) for C20H20F4N4O2. found 425.0 (MH+).


Compound B34

To a stirred solution of B34.4 (15.0 mg, a mixture of E/Z=3.8:1, 0.0353 mmol), 4-chloro-2-(trifluoromethyl)pyridine (12.8 mg, 0.0707 mmol) and DMA (0.5 mL) at room temperature was added potassium carbonate (9.8 mg, 0.071 mmol). After stirring for 26 h, water (3 mL) was added and the resulting solution was extracted with EtOAc (4×2 mL). The combined organic layers were concentrated and purified by silica gel column chromatography twice (tBuOMe/CH2Cl2/Hexane=4:4:3 and Hexane/EtOAc=3:4) to give Compound B34 (5.2 mg, 26%) as a clear oil. 1H-NMR (400 MHz, CDCl3): δ 8.65 (d, 1H), 8.62 (d, 1H), 7.53 (d, 1H), 7.28 (m, 1H), 7.24 (m, 1H), 6.91 (t, 2H), 4.46 (m, 1H), 4.17 (m, 1H), 4.03 (m, 1H), 3.86-3.52 (m, 2H), 3.79 (s, 2H), 2.82 (s, 3H), 2.52 (d, 3H), 2.49-2.27 (m, 1H), 2.12 (m, 1H). MS (EI) for C26H22F7N5O2. found 569.9 (MH+). Analytical HPLC, ret. time=20.636 min, 95% purity.


Compound B35—(Z)-1-(3,3-Difluoro-4-(5-(2-fluoro-1-(2-(trifluoromethyl)pyrimidin-4-yloxyimino)ethyl)-2-methylpyrimidin-4-yl)piperidin-1-yl)-2-(2,6-difluorophenyl)ethanone
B35.1: Ethyl 4-(1-(tert-butoxycarbonyl)-3,3-difluoropiperidin-4-yl)-2-methylpyrimidine-5-carboxylate

A mixture of B33.5 (150 mg, 0.399 mmol), Pd/C (128 mg, 10 wt. %, 0.120 mmol) and MeOH (6 mL) was stirred for 70 min at room temperature under a balloon of hydrogen. The mixture was filtered through Celite and the filtrate was concentrated. The residue was dissolved in EtOAc (5 mL), and the resulting solution was filtered and concentrated to give the free amine ethyl 4-(3,3-difluoropiperidin-4-yl)-2-methylpyrimidine-5-carboxylate. MS (EI) for C13H17F2N3O2. found 286.0 (MH+). To a stirred solution of the free amine, 1,4-dioxane (3 mL) and water (0.7 mL) at room temperature were added DIEA (0.20 mL, 1.2 mmol) and Boc2O (130 mg, 0.600 mmol) in sequence. After stirring for 1 h, aq. sat. NH4Cl (5 mL) was added and the resulting solution was extracted with EtOAc (3×3 mL). The combined organic layers were concentrated and purified by silica gel column chromatography (hexane/EtOAc=6:1→4:1) to give B35.1 (134 mg, 77%) as a clear oil. 1H-NMR (400 MHz, CDCl3): δ 9.05 (s, 1H), 4.67 (m, 1H), 4.40 (q, 2H), 4.29 (m, 1H), 4.11 (m, 1H), 3.38 (m, 1H), 3.17 (m, 1H), 2.78 (s, 3H), 2.47 (m, 1H), 1.95 (m, 1H), 1.48 (s, 9H), 1.41 (t, 3H). MS (EI) for C18H25F2N3O4. found 386.0 (MH+).


B35.2: tert-Butyl 3,3-difluoro-4-(5-formyl-2-methylpyrimidin-4-yl)piperidine-1-carboxylate

To a stirred solution of B35.1 (100 mg, 0.259 mmol) in THF (3 mL) at 0° C. was added LiAlH4 (0.21 mL, 1M in THF, 0.208 mmol). After stirring for 1 h at 0° C., water (0.02 mL), 15% NaOH (0.02 mL) and water (0.04 mL) were added in sequence at room temperature with vigorous stirring. The resulting mixture was stirred for additional 1 h and EtOAc (3 mL) was added. The resulting mixture was filtered through Celite and concentrated to give the alcohol tert-butyl 3,3-difluoro-4-(5-(hydroxymethyl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate. MS (EI) for C16H23F2N3O3. found 344.1 (MH+). To a stirred solution of the alcohol in CH2Cl2 (3 mL) at room temperature was added Dess-Martin periodinane (220 mg, 0.518 mmol). After stirring for 70 min, water (5 mL) was added and the resulting solution was extracted with EtOAc (10 mL, 2×2 mL). The combined organic layers were concentrated and purified by silica gel column chromatography (Hexane/EtOAc=3:1→4:3) to give B35.2 (40 mg, 45%) as a white solid.


B35.3: tert-Butyl 4-(5-acetyl-2-methylpyrimidin-4-yl)-3,3-difluoropiperidine-1-carboxylate

To a stirred solution of B35.2 (40.0 mg, 0.117 mmol) in THF (1 mL) at 0° C. was added methylmagnesium bromide (0.17 mL, 1.4M in Toluene/THF (3:1), 0.23 mmol). After stirring for 1.5 h at room temperature, aq. sat. NH4Cl (3 mL) was added and the resulting solution was extracted with EtOAc (3×2 mL). The combined organic layers were dried over magnesium sulfate and concentrated to give the alcohol tert-butyl 3,3-difluoro-4-(5-(1-hydroxyethyl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate. MS (EI) for C17H25F2N3O3. found 358.1 (MH+). To a stirred solution of the alcohol in CH2Cl2 (2 mL) at room temperature was added Dess-Martin periodinane (99.0 mg, 0.234 mmol). After stirring for 1.5 h, water (3 mL) was added and the resulting solution was extracted with EtOAc (5 mL, 2×2 mL). The combined organic layers were concentrated and purified by silica gel column chromatography (hexane/EtOAc=3:2) to give B35.3 (37 mg, 89%) as a clear oil. MS (EI) for C17H23F2N3O3. found 356.0 (MH+).


B35.4 tert-Butyl 4-(5-(2-bromoacetyl)-2-methylpyrimidin-4-yl)-3,3-difluoropiperidine-1-carboxylate

To a stirred solution of B35.3 (37.0 mg, 0.104 mmol) in THF (1 mL) at 0° C. was added lithium bis(trimethylsilyl)amide (LiHMDS) (0.16 mL, 1M in THF, 0.16 mmol). After stirring for 15 min at 0° C., chlorotrimethylsilane (20 μL, 0.16 mmol) was added. After stirring for 4 h at 0° C., aq. sat. NaHCO3 (3 mL) was added and the resulting solution was extracted with EtOAc (3×2 mL). The combined organic layers were dried over magnesium sulfate and concentrated. To a stirred solution of the resulting residue in THF (1 mL) at 0° C. were added NaHCO3 (13.1 mg, 0.156 mmol) and NBS (18.5 mg, 0.104 mmol) in sequence. After stirring for 40 min at room temperature, aq. sat. NaHCO3 (3 mL) was added at 0° C. and the resulting solution was extracted with EtOAc (3×2 mL). The combined organic layers were concentrated and purified by silica gel column chromatography (hexane/EtOAc=7:3) to give B35.4 (30 mg, 66%) as a clear oil. MS (EI) for C17H22BrF2N3O3. found 434.0 (MH+).


B35.5: 2-(4-(1-(2-(2,6-Difluorophenyl)acetyl)-3,3-difluoropiperidin-4-yl)-2-methylpyrimidin-5-yl)-2-oxoethyl acetate

A mixture of B35.4 (52.0 mg, 0.120 mmol), potassium acetate (35.3 mg, 0.360 mmol) and DMA (0.8 mL) was stirred for 30 min at room temperature and then purified by silica gel column chromatography (hexane/EtOAc=2:1) to give B35.5 (54 mg, crude) as a pale yellow oil. MS (EI) for C19H25F2N3O5. found 414.0 (MH+).


B35.6: 2-(4-(1-(2-(2,6-Difluorophenyl)acetyl)-3,3-difluoropiperidin-4-yl)-2-methylpyrimidin-5-yl)-2-oxoethyl acetate

A mixture of B35.5 (27 mg) and 4N HCl in 1,4-dioxane (1 mL) was stirred for 1 h at room temperature and concentrated under vacuum. EtOAc (2 mL) was added and the mixture was concentrated again to give the amine HCl salt, 2-(4-(3,3-difluoropiperidin-4-yl)-2-methylpyrimidin-5-yl)-2-oxoethyl acetate hydrochloride. MS (EI) for C14H17F2N3O3. found 314.0 (MH+). To a stirred solution of the amine salt, 2-(2,6-difluorophenyl)acetic acid (13.4 mg, 0.0780 mmol), HATU (34.2 mg, 0.0900 mmol) and DMF (0.6 mL) at room temperature was added DIEA (30 μL, 0.18 mmol). After stirring for 40 min, water (3 mL) was added and the resulting solution was extracted with EtOAc (3×3 mL). The combined organic layers were concentrated and purified by silica gel column chromatography (hexane/EtOAc=1:1→2:3) to give B35.6 (25 mg, 89%) as a clear oil. MS (EI) for C21H21F4N3O4. found 468.0 (MH+).


B35.7: (2)-1-(3,3-Difluoro-4-(5-(2-hydroxy-1-(hydroxyimino)ethyl)-2-methylpyrimidin-4-yl)piperidin-1-yl)-2-(2,6-difluorophenyl)ethanone

To a stirred solution of B35.6 (18.0 mg, 0.0385 mmol) in EtOH (1 mL) were added hydroxylamine.HCl (8.0 mg, 0.12 mmol) and a catalytic amount of cone HCl. After stirring for 75 h at 60° C., aq. sat. NaHCO3 (1 mL) and water (1 mL) were added at 0° C., and the resulting solution was extracted with EtOAc (4 mL, 2×2 mL). The combined organic layers were concentrated, dissolved in EtOAc (3 mL) and washed with water (0.5 mL). The aq. layer was extracted with EtOAc (2×1 mL). The combined organic layers were purified by silica gel column chromatography (hexane/EtOAc=1:3→EtOAc) to give B35.7 (10 mg, 59%) as a clear oil. MS (EI) for C20H20F4N4O3. found 441.0 (MH+).


B35.8: (Z)-1-(3,3-Difluoro-4-(5-(2-hydroxy-1-(2-(trifluoromethyl)pyrimidin-4-yloxyimino)ethyl)-2-methylpyrimidin-4-yl)piperidin-1-yl)-2-(2,6-difluorophenyl)ethanone

To a stirred solution of B35.7 (16.5 mg, 0.0375 mmol), 4-chloro-2-(trifluoromethyl)pyrimidine (20.5 mg, 0.112 mmol) and DMA (1.5 mL) at room temperature was added potassium carbonate (20.7 mg, 0.150 mmol). After stirring for 1 h, the resulting mixture was purified by silica gel column chromatography (hexane/EtOAc=1:1→2:5) to give B35.8 (10 mg, 46%) as a white foam. MS (EI) for C25H21F7N6O3. found 587.2 (MH+).


Compound B35

To a stirred solution of B35.8 (10.0 mg, 0.0171 mmol) in CH2Cl2 (1 mL) at 0° C. was added DAST (8.2 mg, 0.051 mmol). After stirring for 50 min at 0° C., water (2 mL) was added and the resulting solution was extracted with EtOAc (3×2 mL). The combined organic layers were concentrated and purified by silica gel column chromatography (hexane/EtOAc=4:3) to give Compound B35 (6.5 mg, 65%) as a white solid after lyophilization. 1H-NMR (400 MHz, CDCl3): δ 8.82 (d, 1H), 8.66 (s, 1H), 7.40 (d, 1H), 7.24 (m, 1H), 6.90 (t, 2H), 5.78 (m, 2H), 4.34 (m, 2H), 3.78 (s, 2H), 3.69 (m, 3H), 2.83 (s, 3H), 2.58-2.34 (m, 1H), 2.11 (m, 1H). MS (EI) for C25H20F8N6O2. found 589.2 (MH+). Analytical HPLC, ret. time=20.084 min, 98% purity.


Compound C1—4-{1-[(2,6-Difluorophenyl)acetyl]piperidin-4-yl}-2,6-dimethyl-5-{3-[3-(trifluoromethyl)phenyl]-1,2,4-oxadiazol-5-yl}pyrimidine
C1.1: (Z)—N′-Hydroxy-3-(trifluoromethyl)benzimidamide

To a mixture of 3-(trifluoromethyl)benzonitrile (1.80 g, 10.5 mmol) and hydroxylamine hydrochloride (4.39 g, 63.1 mmol) in EtOH (15 mL) was added Et3N (7.45 g, 73.6 mmol). The resulting white slurry was heated in a sealed tube at 80° C. with stirring for 2.5 h. After cooling to room temperature, the reaction mixture was diluted with EtOAc, and washed with water (3×) and brine, dried (magnesium sulfate), and concentrated in vacuo to give C1.1 as a solid (2.276 g): MS (EI) for C8H7F3N2O. found 205.0 (MH+). The material was used directly for the subsequent reaction without further purification.


Compound C1

To a mixture of A80.4 (120 mg, 0.31 mmol), HATU (141 mg, 0.37 mmol), and DMA (2.1 mL) was added DIEA (80 mg, 0.62 mmol). The resulting mixture was stirred at 35° C. for 5 min, then C1.1 (82 mg, 0.40 mmol) was added. The resulting mixture was stirred at 35° C. for 1 h, followed by heating at 100° C. for an additional 20 h. After cooling to room temperature, the reaction mixture was subjected to a routine aq. workup, and purified by prep HPLC. The fractions containing the desired product were combined and lyophilized to afford Compound C1 as a white solid (21 mg). 1H-NMR (400 MHz, CDCl3): δ 8.45 (s, 1H), 8.37 (d, 1H), 7.84 (d, 1H), 7.70 (t, 1H), 7.22 (m, 1H), 6.70 (m, 2H), 4.73 (d, 1H), 4.11 (d, 1H), 3.74 (dd, 2H), 3.15 (t, 1H), 2.93 (m, 1H), 2.78 (s, 3H), 2.62 (m, 1H), 2.56 (s, 3H), 2.10-1.83 (m, 4H). MS (EI) for C28H24F5N5O2. found 558.0 (MH+).


Compounds C2-C4

Compounds C2 to C4 were prepared from methods analogous to those used to prepare Compound C1 utilizing appropriate reagent replacements.

















HPLC
Mass




Retention
Report-




Time
ed


Cpd
Chemical Name
(min)
(MH+)







C2
2-(2,6-difluorophenyl)-1-(4-(5-(3-(4-
22.31
508.0



fluorophenyl)-1,2,4-oxadiazol-5-yl)-2,6-



dimethylpyrimidin-4-yl)piperidin-1-



yl)ethanone


C3
2-(2,6-difluorophenyl)-1-(4-(5-(3-(4-
23.58
522.0



fluorobenzyl)-1,2,4-oxadiazol-5-yl)-2,6-



dimethylpyrimidin-4-yl)piperidin-1-



yl)ethanone


C4
1-(4-(5-(3-(3-chlorophenyl)-1,2,4-oxadiazol-
24.22
523.9



5-yl)-2,6-dimethylpyrimidin-4-yl)piperidin-



1-yl)-2-(2,6-difluorophenyl)ethanone










HPLC conditions used to determine retention times: YMC C18, 5μ 150×4.6 mm column, gradient 10% to 90% MeCN/H2O, in the presence of 0.1% TFA, 25 min gradient time, 27 min total run time at 1.5 mL/min flow rate, λ=254 nM


Compound C5—4-{1-[(2,6-Difluorophenyl)acetyl]piperidin-4-yl}-2,6-dimethyl-5-{5-[2-(trifluoromethyl)pyrimidin-4-yl]-1,3,4-oxadiazol-2-yl}pyrimidine
C5.1: 2-(Trifluoromethyl)pyrimidine-4-carbohydrazide

To a solution of methyl 2-(trifluoromethyl)pyrimidine-4-carboxylate (1.50 g, 7.28 mmol) in 10 mL of anhydrous MeOH was added hydrazine monohydrate (1.09 g, 21.83 mmol). The resulting solution was heated at 50° C. with stirring for 5 min, at which time the reaction was completed. The reaction mixture, as a yellow solution, was reduced to ⅓ of the volume in vacuo. The precipitate thus formed was filtered, washed with MeOH, and dried to give 1.16 g of C5.1 as a yellow crystalline solid. The combined filtrate was concentrated under high vacuum to afford an additional 0.20 g of the hydrazide product as a yellow solid. 1H-NMR (400 MHz, CDCl3): δ9.14 (d, 1H), 8.94 (br. s, 1H), 8.27 (d, 1H), 4.16 (d, 2H).


C5.2: N-(4-(1-(2-(2,6-Difluorophenyl)acetyl)piperidin-4-yl)-2,6-dimethylpyrimidine-5-carbonyl)-2-(trifluoromethyl)pyrimidine-4-carbohydrazide

A solution of A80.4 (100 mg, 0.26 mmol), EDC (59 mg, 0.31 mmol), and HOBt (42 mg, 0.31 mmol) in DMA (1.5 mL) was stirred at 35° C. for 1.5 h. C5.1 (69 mg, 33 mmol) was then added to the above solution. The resulting mixture was heated at 50° C. for 24 h. After cooling to room temperature, the mixture was diluted with EtOAc, and washed with water and brine, dried with magnesium sulfate and concentrated in vacuo. The residue was purified by prep HPLC to afford C5.2 (55 mg) as a white solid. 1H-NMR (400 MHz, CDCl3): δ 9.65 (br. s, 1H), 9.25 (d, 1H), 8.34 (d, 1H), 8.0 (br. s, 1H), 7.23 (m, 1H), 6.90 (t, 2H), 4.74 (d, 1H), 4.13 (d, 1H), 3.76 (s, 2H), 3.34-3.23 (m, 2H), 2.78 (t, 1H), 2.71 (s, 3H), 2.62 (s, 3H), 2.08-1.82 (m, 4H). MS (EI) for C26H24F5N7O3. found 578.1 (MH+).


Compound C5

To a solution of C5.2 (76 mg, 0.13 mmol) in anhydrous MeCN (1.3 mL) was added anhydrous K2CO3 (55 mg, 0.40 mmol), followed by p-toluenesulfonyl chloride (p-TsCl) (38 mg, 0.20 mmol). The mixture was stirred at 50° C. for 30 min when the reaction was completed. The reaction mixture as a slurry was diluted with water. The organic layer was separated and purified by prep HPLC to give Compound C5 as a white solid (52 mg). 1H-NMR (400 MHz, CDCl3): δ 9.22 (d, 1H), 8.48 (d, 1H), 7.23 (m, 1H), 6.90 (m, 2H), 4.73 (d, 1H), 4.11 (d, 1H), 3.75 (dd, 2H), 3.16 (t, 1H), 2.98 (m, 1H), 2.78 (s, 3H), 2.61 (m, 1H), 2.60 (s, 3H), 2.13-1.95 (m, 3H), 1.84 (d, 1H). Analytical HPLC, ret. time=18.83 min, 99% purity. MS (EI) for C26H22F5N7O2. found 559.9 (MH+).


Compounds C6-C23

Compounds C6 to C23 were prepared from methods analogous to those used to prepare Compound C5 utilizing appropriate reagent replacements.

















HPLC





Reten-
Mass




tion
Report-




Time
ed


Cpd
Chemical Name
(min)
(MH+)







C6
2-(2,6-difluorophenyl)-1-(4-(2,6-dimethyl-5-(5-
15.05
559.2



(6-(trifluoromethyl)pyridin-2-yl)-1,3,4-



oxadiazol-2-yl)pyrimidin-4-yl)piperidin-1-



yl)ethanone


C7
2-(2,6-difluorophenyl)-1-(4-(2,6-dimethyl-5-(5-
19.60
574.2



(6-methyl-2-(trifluoromethyl)pyrimidin-4-yl)-



1,3,4-oxadiazol-2-yl)pyrimidin-4-yl)piperidin-



1-yl)ethanone


C8
1-(4-(5-(5-(6-(1,1-difluoroethyl)pyridin-2-yl)-
19.35
555.2



1,3,4-oxadiazol-2-yl)-2,6-dimethylpyrimidin-4-



yl)piperidin-1-yl)-2-(2,6-



difluorophenyl)ethanone


C9
(1-(4-(5-(5-(6-chloropyridin-2-yl)-1,3,4-
18.04
524.9



oxadiazol-2-yl)-2,6-dimethylpyrimidin-4-



yl)piperidin-1-yl)-2-(2,6-



difluorophenyl)ethanone


C10
2-(2,6-difluorophenyl)-1-(4-(2,6-dimethyl-5-(5-
21.82
573.9



(3-(trifluoromethoxy)phenyl)-1,3,4-oxadiazol-



2-yl)pyrimidin-4-yl)piperidin-1-yl)ethanone


C11
1-(4-(5-(5-(3-chlorophenyl)-1,3,4-oxadiazol-2-
20.81
523.9



yl)-2,6-dimethylpyrimidin-4-yl)piperidin-1-yl)-



2-(2,6-difluorophenyl)ethanone


C12
2-(2,6-difluorophenyl)-1-(4-(2,6-dimethyl-5-(5-
21.28
558.0



(3-(trifluoromethyl)phenyl)-1,3,4-oxadiazol-2-



yl)pyrimidin-4-yl)piperidin-1-yl)ethanone


C13
2-(2,6-difluorophenyl)-1-(4-(5-(5-(3,5-
21.73
518.0



dimethylphenyl)-1,3,4-oxadiazol-2-yl)-2,6-



dimethylpyrimidin-4-yl)piperidin-1-yl)ethanone


C14
1-(4-(5-(5-(2-chlorophenyl)-1,3,4-oxadiazol-2-
19.97
524.1



yl)-2,6-dimethylpyrimidin-4-yl)piperidin-1-yl)-



2-(2,6-difluorophenyl)ethanone


C15
2-(2,6-difluorophenyl)-1-(4-(2,6-dimethyl-5-(5-
19.39
559.0



(2-(trifluoromethyl)pyridin-4-yl)-1,3,4-



oxadiazol-2-yl)pyrimidin-4-yl)piperidin-1-



yl)ethanone


C16
2-(2,6-difluorophenyl)-1-(4-(2,6-dimethyl-5-(5-
18.06
490.1



phenyl-1,3,4-oxadiazol-2-yl)pyrimidin-4-



yl)piperidin-1-yl)ethanone


C17
2-(2,6-difluorophenyl)-1-(4-(5-(5-(2-
18.57
534.0



isopropylpyrimidin-4-yl)-1,3,4-oxadiazol-2-yl)-



2,6-dimethylpyrimidin-4-yl)piperidin-1-



yl)ethanone


C18
2-(2,6-difluorophenyl)-1-(4-(2,6-dimethyl-5-(5-
21.21
572.0



(3-(trifluoromethyl)benzyl)-1,3,4-oxadiazol-2-



yl)pyrimidin-4-yl)piperidin-1-yl)ethanone


C19
1-(4-(5-(5-(2-chloro-6-methylpyridin-4-yl)-
19.20
539.0



1,3,4-oxadiazol-2-yl)-2,6-dimethylpyrimidin-4-



yl)piperidin-1-yl)-2-(2,6-



difluorophenyl)ethanone


C20
1-(4-(5-(5-(5-chloropyridin-2-yl)-1,3,4-
18.04
525.2



oxadiazol-2-yl)-2,6-dimethylpyrimidin-4-



yl)piperidin-1-yl)-2-(2,6-



difluorophenyl)ethanone


C21
1-(4-(5-(5-(4-chloropyridin-2-yl)-1,3,4-
17.90
524.9



oxadiazol-2-yl)-2,6-dimethylpyrimidin-4-



yl)piperidin-1-yl)-2-(2,6-



difluorophenyl)ethanone


C22
1-(4-(5-(5-(2-chloropyridin-4-yl)-1,3,4-
18.04
524.9



oxadiazol-2-yl)-2,6-dimethylpyrimidin-4-



yl)piperidin-1-yl)-2-(2,6-



difluorophenyl)ethanone


C23
1-(4-(5-(5-(6-chloropyridin-3-yl)-1,3,4-
17.91
524.9



oxadiazol-2-yl)-2,6-dimethylpyrimidin-4-



yl)piperidin-1-yl)-2-(2,6-



difluorophenyl)ethanone










HPLC conditions used to determine retention times: YMC C18, 5μ 150×4.6 mm column, gradient 10% to 90% MeCN/H2O, in the presence of 0.1% TFA, 25 min gradient time, 27 min total run time at 1.5 mL/min flow rate, λ=254 nM


Compound C24—4-{1-[(2,6-Difluorophenyl)carbonyl]piperidin-4-yl}-2,6-dimethyl-5-{5-[2-(trifluoromethyl)pyrimidin-4-yl]-1,3,4-oxadiazol-2-yl}pyrimidine
C24.1: 4-(1-(tert-Butoxycarbonyl)piperidin-4-yl)-2,6-dimethylpyrimidine-5-carboxylic acid

The ester of A80.1 was hydrolyzed to C24.1 with the same technique used to hydrolyze A80.3 to A80.4.


C24.2: tert-Butyl 4-(2,6-dimethyl-5-(2-(2-(trifluoromethyl)pyrimidine-4-carbonyl)hydrazinecarbonyl)pyrimidin-4-yl)piperidine-1-carboxylate

A solution of C24.1 (500 mg, 1.49 mmol), EDC (329 mg, 1.71 mmol), and HOBt (232 mg, 1.71 mmol) in DMA (10 mL) was stirred at 25° C. for 1.5 h. To the above mixture was added C5.1 (344 mg, 1.67 mmol). The resulting mixture was stirred at 40° C. for 17 h. After cooling to room temperature, the reaction mixture was diluted with EtOAc, washed with water (3×) and brine, dried (magnesium sulfate), and concentrated in vacuo to dryness, yielding a solid (793 mg). LC/MS analysis of the resulting residue showed the presence of C24.2 as a major product. MS (EI) for C23H28F3N7O4. found 524.2 (MH+). The crude product was used directly for the next reaction as is.


C24.3: tert-Butyl 4-(2,6-dimethyl-5-(5-(2-(trifluoromethyl)pyrimidin-4-yl)-1,3,4-oxadiazol-2-yl)pyrimidin-4-yl)piperidine-1-carboxylate

The entire amount (793 mg) of crude product obtained from the previous step (C24.2) was dissolved in 30 mL of anhydrous MeCN. To this solution was added K2CO3 (850 mg, 4.45 mmol), followed by p-toluenesulfonyl chloride (1236 mg, 4.94 mmol). The mixture was stirred at 50° C. for 1 h. After removal of solvent in vacuo, the crude mixture was diluted with EtOAc, washed with water (3×) and brine, dried (magnesium sulfate), and concentrated in vacuo to dryness, affording C24.3 as a solid (761 mg). MS (EI) for C23H26F3N7O3. found 506.2 (MH+). The crude product was used directly for the subsequent reaction.


C24.4: 2-(2,4-Dimethyl-6-(piperidin-4-yl)pyrimidin-5-yl)-5-(2-(trifluoromethyl)pyrimidin-4-yl)-1,3,4-oxadiazole

Crude C24.3 (760 mg) obtained above was dissolved in MeCN (4 mL). To this solution was added 4M HCl in dioxane (6 mL), which was allowed to stir at room temperature for 10 min. After removal of solvent in vacuo, the residue was dissolved in water and washed with tert-butyl methyl ether (2×). The aq. layer was cooled to 0° C., and basified to pH 11 by slow addition of 2N NaOH aq. solution, and then extracted with EtOAc (3×). The combined organic extract was washed with brine, dried with magnesium sulfate, and concentrated under high vacuum, to give C24.4 as a solid (310 mg). 1H-NMR (400 MHz, CDCl3): δ 9.22 (d, 1H), 8.47 (d, 1H), 3.36 (d, 2H), 2.89 (m, 1H), 2.77 (s, 3H), 2.76 (m, 2H), 2.58 (s, 3H), 2.46 (br. s, 1H), 2.22-2.07 (m, 2H), 1.94-1.91 (m, 2H). MS (EI) for C18H18F3N7O3. found 406.2 (MH+).


Compound C24

A solution of 2,6-difluorobenzoic acid (11 mg, 0.07 mmol), EDC (11 mg, 0.06 mmol), and HOBt (8 mg, 0.06 mmol) in DMA (0.6 mL) was stirred at room temperature for 1.5 h. To the mixture was added C24.4 (18 mg, 0.04 mmol). The reaction mixture was stirred at room temperature for 17 h. To the resulting mixture was added 2N NaOH aq. solution (2 drops). The reaction mixture was stirred for 5 min, and neutralized with AcOH. The crude mixture was purified on prep HPLC to give Compound C24 as a solid (8.5 mg). 1H-NMR (400 MHz, CDCl3): δ 9.21 (d, 1H), 8.46 (d, 1H), 7.34 (m, 1H), 6.94 (m 2H), 4.89 (d, 1H), 3.63 (d, 1H), 3.12 (m, 1H), 2.99 (m, 1H), 2.81 (m, 1H), m2.77 (s, 3H), 2.59 (s, 3H), 2.15-1.99 (m, 2H), 1.94 (d, 1H), 1.83 (d, 1H). Analytical HPLC, ret. time=18.300 min, 98% purity. MS (EI) for C25H20F5N7O2. found: 546.2 (MH+).


Compounds C25-C27

Compounds C25 to C27 were prepared from methods analogous to those used to prepare Compounds C24 utilizing appropriate reagent replacements.

















HPLC





Reten-
Mass




tion
Report-




Time
ed


Cpd
Chemical Name
(min)
(MH+)







C25
1-(4-(2,6-dimethyl-5-(5-(2-
17.93
542.2



(trifluoromethyl)pyrimidin-4-yl)-1,3,4-



oxadiazol-2-yl)pyrimidin-4-yl)piperidin-1-yl)-



2-(2-fluorophenyl)ethanone


C26
2-(2,6-difluorophenyl)-1-(4-(2,6-dimethyl-5-(5-
19.23
574.2



(2-(trifluoromethyl)pyrimidin-4-yl)-1,3,4-



oxadiazol-2-yl)pyrimidin-4-yl)piperidin-1-



yl)propan-1-one


C27
(2-chloro-6-fluorophenyl)(4-(2,6-dimethyl-5-(5-
14.63
562.1



(2-(trifluoromethyl)pyrimidin-4-yl)-1,3,4-



oxadiazol-2-yl)pyrimidin-4-yl)piperidin-1-



yl)methanone










HPLC conditions used to determine retention times: YMC C18, 5μ 150×4.6 mm column, gradient 10% to 90% MeCN/H2O, in the presence of 0.1% TFA, 25 min gradient time, 27 min total run time at 1.5 mL/min flow rate, λ=254 nM


Compound C28—N-(2,6-Difluorophenyl)-4-(2,6-dimethyl-5-{5-[2-(trifluoromethyl)pyrimidin-4-yl]-1,3,4-oxadiazol-2-yl}pyrimidin-4-yl)piperidine-1-carboxamide

To a solution of C24.4 (16 mg, 0.04 mmol) in CH2Cl2 was added 1,3-difluoro-2-isocyanatobenzene (9 mg, 0.06 mmol) and a drop of DIEA. The solution was stirred at room temperature for 2 min at which time the reaction was complete. After removal of the solvent in vacuo, the residue was purified on prep. HPLC, affording Compound C28 as a white solid (10 mg). 1H-NMR (400 MHz, CDCl3): δ 9.21 (d, 1H), 8.47 (d, 1H), 7.10 (m, 1H), 6.93 (t, 2H), 5.87 (s, 1H), 4.22 (d, 2H), 2.99-2.91 (m, 3H), 2.78 (s, 3H), 2.59 (s, 3H), 2.12 (m, 2H), 1.91 (d, 2H).). Analytical HPLC, ret. time=16.62 min, 98% purity. MS (EI) for C25H21F5N8O2. found: 561.2 (NH+)


Compounds C29-C32

Compounds C29 to C32 were prepared from methods analogous to those used to prepare Compound C28 utilizing appropriate reagent replacements.


HPLC conditions used to determine retention times: YMC C18, 5μ 150×4.6 mm column,

















HPLC
Mass




Retention
Report-




Time
ed


Cpd
Chemical Name
(min)
(MH+)







C29
N-(2-chlorophenyl)-4-(2,6-dimethyl-5-{5-[2-
14.80
559.2



(trifluoromethyl)pyrimidin-4-yl]-1,3,4-



oxadiazol-2-yl}pyrimidin-4-yl)piperidine-1-



carboxamide


C30
4-(2,6-dimethyl-5-{5-[2-
14.00
593.1



(trifluoromethyl)pyrimidin-4-yl]-1,3,4-



oxadiazol-2-yl}pyrimidin-4-yl)-N-[2-



(trifluoromethyl)phenyl]piperidine-1-



carboxamide


C31
N-(2,6-dichlorophenyl)-4-(2,6-dimethyl-5-
14.84
593.2



{5-[2-(trifluoromethyl)pyrimidin-4-yl]-1,3,4-



oxadiazol-2-yl}pyrimidin-4-yl)piperidine-1-



carboxamide


C32
4-(2,6-dimethyl-5-{5-[2-
20.08
609.2



(trifluoromethyl)pyrimidin-4-yl]-1,3,4-



oxadiazol-2-yl}pyrimidin-4-yl)-N-{2-



[(trifluoromethyl)oxy]phenyl}piperidine-1-



carboxamide










gradient 10% to 90% MeCN/H2O, in the presence of 0.1% TFA, 25 min gradient time, 27 min total run time at 1.5 mL/min flow rate, λ=254 nM


Compound C33—4-{1-[(2,6-Difluorophenyl)sulfonyl]piperidin-4-yl}-2,6-dimethyl-5-{5-[2-(trifluoromethyl)pyrimidin-4-yl]-1,3,4-oxadiazol-2-yl}pyrimidine

To a solution of C24.4 (17 mg, 0.04 mmol) in CH2Cl2 (0.5 mL) was added 2,6-difluorobenzene-1-sulfonyl chloride (16 mg, 0.07 mmol), followed by DIEA (9 mg). After stirring at room temperature for 2 min, the reaction mixture was concentrated in vacuo to remove solvent. The residue was dissolved in MeCN and purified on prep HPLC to give Compound C33 as a white solid (9 mg). 1H-NMR (400 MHz, CDCl3): δ 9.19 (d, 1H), 8.42 (d, 1H), 7.50 (m, 1H), 7.02 (t, 2H), 4.08 (d, 2H), 2.86 (m, 1H), 2.76 (s, 3H), 2.65 (d, 2H), 2.60 (s, 3H), 2.26-2.16 (m, 2H), 1.92 (d, 2H). Analytical HPLC, ret. time=19.692 min, 99% purity. MS (EI) for C24H20F5N7O3S. found: 582.1 (MH+).


Compound C34—4-(1-{[(2-Fluorophenyl)methyl]sulfonyl}piperidin-4-yl)-2,6-dimethyl-5-{5-[2-(trifluoromethyl)pyrimidin-4-yl]-1,3,4-oxadiazol-2-yl}pyrimidine

Compound C34 was synthesized in a manner analogous to C33. Analytical HPLC, ret. time=19.628 min. MS (EI) for C25H23F4N7O3S. found: 578.2 (MH+).


Compound C35—(R)-2-(2,6-Difluorophenyl)-1-(4-(2,6-dimethyl-5-(5-(2-(trifluoromethyl)pyrimidin-4-yl)-1,3,4-oxadiazol-2-yl)pyrimidin-4-yl)piperidin-1-yl)propan-1-one
C35.1: Perfluorophenyl 2-(2,6-difluorophenyl)propanoate

To a stirred solution of 2-(2,6-difluorophenyl)propanoic acid (186 mg, 1.00 mmol, J. Med. Chem. 2005, 48, 6776.), DCC (248 mg, 1.20 mmol) and CH2Cl2 (4 mL) at room temperature was slowly added a solution of pentafluorophenol (184 mg, 1.00 mmol) in CH2Cl2 (4 mL). After stirring for 18 h, the resulting mixture was filtered through Celite. Water (3 mL) was added to the filtrate and the aq. layer was extracted with EtOAc (2×3 mL). The combined organic layers were concentrated and purified by silica gel column chromatography (CH2Cl2/hexane=1:20) to give C35.1 (300 mg, 85%) as a clear oil.


C35.2: (S)—3-((R)-2-(2,6-Difluorophenyl)propanol)-4-phenyloxazolidin-2-one

To a stirred solution of (S)—4-phenyloxazolidin-2-one (32.6 mg, 0.200 mmol) in THF (1 mL) at −78° C. was added nBuLi (90 μL, 2.5M in Hexane, 0.22 mmol). After stirring for 1 h, a solution of C35.1 (140 mg, 0.400 mmol) in THF (1.5 mL) was slowly added at −78° C. After stirring for 2 h, water (2 mL) was added and the resulting solution was extracted with EtOAc (3×2 mL). The combined organic layers, which contained a diastereomeric mixture with 94% de, were concentrated and purified by silica gel column chromatography (CH2Cl2/hexane=1:5→5:1) to give C35.2 (57 mg, a single diastereomer, 43%) as a white solid. The stereochemistry of C35.2 was predicted by following a method described in Synlett 2009, 960. 1H-NMR (400 MHz, CDCl3): δ 7.36 (m, 3H), 7.24 (m, 2H), 7.18 (m, 1H), 6.80 (t, 2H), 5.49 (dd, 1H), 4.97 (q, 1H), 4.68 (t, 1H), 4.22 (d, 1H), 1.44 (d, 3H). MS (EI) for C18H15F2NO3. found 332.1 (MH+).


C35.3: (R)-2-(2,6-Difluorophenyl)propanoic acid

To a stirred solution of C35.2 (25.0 mg, 0.0755 mmol), THF (0.6 mL) and water (0.2 mL) at room temperature were added H2O2 (17 mg, 30 wt. % in H2O, 0.15 mmol) and LiOH (3.6 mg, 0.15 mmol) in sequence. After stirring for 8 h, water (2 mL) was added and the resulting solution was washed with EtOAc (2×2 mL). The aq. layer was acidified with IN HCl solution and extracted with EtOAc (2×2 mL). The combined organic layers were concentrated and purified by silica gel column chromatography (CH2Cl2/MeOH=40:1→20:1) to give C35.3 (13.5 mg, 96%) as a clear oil.


Compound C35

To a stirred solution of C35.3 (16.0 mg, 0.0860 mmol), C24.4 (24.9 mg, 0.0614 mmol), HATU (46.7 mg, 0.123 mmol) and DMF (0.6 mL) at room temperature was added DIEA (30 μL, 0.18 mmol). After stirring for 1.5 h, water (2 mL) was added and the resulting solution was extracted with EtOAc (3×2 mL). The combined organic layers were concentrated and purified by silica gel column chromatography (hexane/EtOAc=1:1→2:3) to give Compound C35 (15 mg, 43%) as a white solid after lyophilization. 1H-NMR (400 MHz, CDCl3, rotameric mixture): δ 9.20 (m, 1H), 8.44 (t, 1H), 7.21 (m, 1H), 6.93 and 6.87 (two of t, 2H), 4.78 (d, 1H), 4.14 (m, 1H), 3.73 (t, 1H), 2.96-2.50 (m, 3H), 2.76 and 2.71 (two of s, 3H), 2.58 and 2.54 (two of s, 3H), 1.98 (m, 1H), 1.81 (m, 2H), 1.51-1.02 (m, 1H), 1.50 (d, 3H). MS (EI) for C27H24F5N7O2. found 574.2 (MH+). Analytical HPLC, ret. time=19.296 min, 95% purity.


Compound C36—N-(2,6-Difluorophenyl)-4-(2,6-dimethyl-5-(5-(2-(trifluoromethyl)pyrimidin-4-yl)-1,3,4-oxadiazol-2-yl)pyrimidin-4-yl)-N-methylpiperidine-1-carboxamide

To a stirred solution of C28 (11.0 mg, 0.0196 mmol), iodomethane (5.6 mg, 0.039 mmol) and THF (0.5 mL) at 0° C. was added NaH (1.2 mg, 60% dispersion in mineral oil, 0.029 mmol). After stirring for 2 h, aq. sat. NH4Cl (1 mL) was added and the resulting solution was extracted with EtOAc (3×1 mL). The combined organic layers were concentrated and purified by silica gel column chromatography (hexane/EtOAc=1:1→1:2) to give Compound C36 (9.0 mg, 80%) as a white solid after lyophilization. 1H-NMR (400 MHz, CDCl3): δ 9.20 (d, 1H), 8.44 (d, 1H), 7.19 (m, 1H), 6.97 (t, 2H), 3.81 (d, 2H), 3.12 (s, 3H), 2.74 (s, 3H), 2.73 (m, 1H), 2.60 (td, 2H), 2.54 (s, 3H), 1.71 (qd, 2H), 1.62 (m, 2H) MS (EI) for C26H23F5N8O2. found 575.2 (MH+). Analytical HPLC, ret. time=18.872 min, 99% purity.


Compound C37—4-{1-[(2,6-Difluorophenyl)acetyl-2-d]piperidin-4-yl}-2-methyl-d2-6-methyl-5-{5-[2-(trifluoromethyl)pyrimidin-4-yl]-1,3,4-oxadiazol-2-yl}pyrimidine

To a solution of C5 (12 mg) in anhydrous THF (1.2 mL) under N2 was added NaH (4 mg, 60% in mineral oil) with stirring at room temperature. The mixture was stirred at room temperature for 20 min. To the mixture was added deuterium oxide (3 mL) with stirring. After stirring for 1 h, 2 drops of AcOH were added, the crude mixture was purified on prep HPLC to give Compound C37 (4 mg). 1H-NMR (400 MHz, CDCl3); δ 9.23 (d, 1H), 8.48 (d, 1H), 7.23 (m, 1H), 6.90 (t, 2H), 4.74 (d, 1H), 4.11 (d, 1H), 3.74 (m, 1H), 3.16 (t, 1), 2.98 (m, 1H), 2.78 (s, 3H), 2.60 (s, 1H), 2.56 (m, 1H), 2.10-1.95 (m, 3H), 1.84 (d, 1H). Analytical HPLC, ret. time=18.752 min. 97% purity. MS for C26H19D3F5N7O2. found: 563.0 (MH+).


Compound C38—4-{1-[(2,6-Difluorophenyl)acetyl-2,2-d2]piperidin-4-yl}-2,6-dimethyl-5-{5-[2-(trifluoromethyl)pyrimidin-4-yl]-1,3,4-oxadiazol-2-yl}pyrimidine
C38.1: 2-(2,6-Difluorophenyl)acetic-2,2-d2 acid

A mixture of 2-(2,6-difluorophenyl)acetic acid (1.00 g, 5.81 mmol), anhydrous K2CO3 (3.21 g, 23.25 mmol) and deuterium oxide (5 mL) was heated at 100° C. with stirring for 24 h. The reaction was cooled to 0° C., acidified to pH 2 with 6N HCl, and then extracted with CH2Cl2. The organic layer was dried over sodium sulfate, and concentrated in vacuo. This process was repeated three more times to give C38.1 as a white solid (0.96 g). 1H-NMR (400 MHz, DMSO-d6): δ 12.55 (s, 1H), 7.38 (m. 1H), 7.08 (m, 2H).


Compound C38

A solution of C38.1 (4.5 mg, 0.03 mmol), EDC (4.3 mg, 0.02 mmol) and HOBt (3.0 mg, 0.02 mmol) in DMA (0.5 mL) was stirred at room temperature for 45 min. To the above mixture was added C24.4 (4.5 mg, 0.03 mmol). The resulting mixture was stirred at room temperature for 40 min. The reaction was quenched by adding 2 drops of 2N NaOH aq. solution. The resulting mixture was purified on HPLC to give Compound C38 as a white solid (4 mg). 1H-NMR (400 MHz, CDCl3); δ 9.20 (d, 1H), 8.45 (d, 1H), 7.21 (m, 1H), 6.89 (t, 2H), 4.72 (d, 1H), 4.10 (d, 1H), 3.16 (t, 1H), 2.99 (m, 1H), 2.77 (s, 3H), 2.61 (m, 1H), 2.59 (s, 3H), 2.08-1.82 (m, 4H). Analytical HPLC, ret. time=18.72 min, 98% purity. MS (EI) for C26H20D2F5N7O2. found: 562.2 (MH+).


Compound C39—4-{1-[2-(2,6-Difluorophenyl)ethanethioyl]piperidin-4-yl}-2,6-dimethyl-5-{5-[2-(trifluoromethyl)pyrimidin-4-yl]-1,3,4-thiadiazol-2-yl}pyrimidine

To a solution of C5.2 (34 mg, 0.06 mmol) in anhydrous 2-methyltetrahydrofuran (1 mL) was added Lawesson's reagent (21 mg, 0.05 mmol). The mixture was heated in a sealed tube at 100° C. with stirring for 3 days. Upon cooling down to room temperature, the mixture was diluted with water, and extracted with EtOAc. The organic layer was washed with brine, dried (magnesium sulfate), and concentrated in vacuo. The crude product thus obtained was purified by prep. HPLC to give Compound C39 as a solid (22 mg). 1H-NMR (400 MHz, CDCl3): δ 9.19 (d, 1H), 8.56 (d, 1H), 7.25 (m, 1H), 6.90 (t, 2H), 5.68 (d, 1H), 4.52 (d, 1H), 4.04 (s, 2H), 3.26 (dt, 1H), 2.99 (dt, 1H), 2.84 (m, 1H), 2.78 (s, 3H), 2.41 (s, 3H), 2.22-2.11 (m, 2H), 1.95-1.86 (m, 2H). Analytical HPLC, ret. time=21.97 min, 99% purity. MS (EI) for C26H22F5N7S2. found 591.9 (MH+).


Compound D1—1-(4-(5-(1-(3-Chlorophenylamino)-2-hydroxypropan-2-yl)-2-methylpyrimidin-4-yl)piperidin-1-yl)-2-(2,6-difluorophenyl)ethanone
D1.1: tert-Butyl 4-(2-methyl-5-(2-methyloxiran-2-yl)pyrimidin-4-yl)piperidine-1-carboxylate

To a mixture of Me3SI (300 mg, 1.5 mmol) in THF (4 mL) was added tBuOK (2 mL, 1.0 M in THF). The resulting mixture was stirred at room temperature for 30 min and B23.1 (320 mg, 1 mmol) was added. Stirring was continued at room temperature for 2 h and then diluted with aq. sat. NaHCO3. The mixture was extracted with EtOAc and the organic mixture was dried over sodium sulfate, filtered, and concentrated. The crude product was used as is in the next step.


D1.2: tert-Butyl 4-(5-(1-(3-chlorophenylamino)-2-hydroxypropan-2-yl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate

A solution of D1.1 (40 mg, 0.12 mmol), 3-chloroaniline (46 mg, 0.36 mmol) and LiCl (21 mg, 0.5 mmol) in EtOH (0.5 mL) was stirred at 80° C. for 5 days. The mixture was diluted with EtOAc, washed with brine, and concentrated. The crude product was purified by flash column chromatography.


Compound D1

To a solution of D1.2 (20 mg, 0.043 mmol) in MeOH (2 mL) was added 4N HCl in dioxane (0.3 mL). The resulting solution was stirred for 12 h at room temperature. EtOAc (25 mL) was added. The mixture was basified with 20% NaOH aq. solution to pH 10. The EtOAc layer was washed with brine, dried over sodium sulfate, and concentrated. The crude amine, 1-(3-chlorophenylamino)-2-(2-methyl-4-(piperidin-4-yl)pyrimidin-5-yl)propan-2-ol, was used in the next step without further purification.


1-(3-Chlorophenoxy)-2-(2-methyl-4-(piperidin-4-yl)pyrimidin-5-yl)propan-2-ol (10 mg, 0.028 mmol) obtained above was mixed with 2,6-difluorophenylacetic acid (10 mg, 0.056 mmol), HATU (15 mg, 0.039 mmol) and DIEA (38 mg, 0.3 mmol) in THF (2 mL). The resulting reaction mixture was stirred at room temperature for 2 h then diluted with aq. sat. NaHCO3. The mixture was extracted with EtOAc and the organic mixture was dried over sodium sulfate, filtered, and concentrated. The crude mixture was purified by prep HPLC to give D1.3. 1H-NMR (400 MHz, DMSO-d6): δ 8.58 (d, 1H), 7.36 (m, 1H), 7.04 (m, 3H), 6.70 (d, 1H), 6.60 (d, 1H), 6.50 (d, 1H), 5.78 (m, 1H), 5.54 (s, 1H), 4.45 (d, 1H), 4.13 (d, 1H), 3.82 (m, 4H), 3.23 (m, 1H), 3.08 (m, 1H), 2.62 (m, 1H), 2.51 (s, 3H), 1.75 (m, 4H), 1.68 (s, 3H). MS (EI) for C27H29ClF2N4O2. found: 515.0 (MH+). Analytical HPLC, ret. time=3.64 min, 99% purity.


Compounds D2-D10

Compounds D2 to D10 were prepared from methods analogous to those used to Compounds Compound D1 utilizing appropriate reagent replacements.

















HPLC
Mass




Retention Time
Reported


Cpd
Chemical Name
(min)
(MH+)


















D2
2-(2,6-difluorophenyl)-1-(4-(5-(2-hydroxy-1-((6-
15.38
550.0



(trifluoromethyl)pyridin-2-yl)amino)propan-2-



yl)-2-methylpyrimidin-4-yl)piperidin-1-



yl)ethanone


D3
2-(2,6-difluorophenyl)-1-(4-(5-(1-((3,5-
3.41*
509.1



dimethylphenyl)amino)-2-hydroxypropan-2-yl)-



2-methylpyrimidin-4-yl)piperidin-1-yl)ethanone


D4
2-(2,6-difluorophenyl)-1-(4-(5-(2-hydroxy-1-((3-
16.96
549.0



(trifluoromethyl)phenyl)amino)propan-2-yl)-2-



methylpyrimidin-4-yl)piperidin-1-yl)ethanone


D5
2-(2,6-difluorophenyl)-1-(4-(5-(2-hydroxy-1-((2-
12.88
551.0



(trifluoromethyl)pyrimidin-4-yl)amino)propan-



2-yl)-2-methylpyrimidin-4-yl)piperidin-1-



yl)ethanone


D6
2-(2,6-difluorophenyl)-1-(4-(5-(1-((4,6-
10.09
510.0



dimethylpyridin-2-yl)amino)-2-hydroxypropan-



2-yl)-2-methylpyrimidin-4-yl)piperidin-1-



yl)ethanone


D7
1-(4-(5-(1-((2-chloropyridin-4-yl)amino)-2-
9.19
516.0



hydroxypropan-2-yl)-2-methylpyrimidin-4-



yl)piperidin-1-yl)-2-(2,6-



difluorophenyl)ethanone


D8
2-(2,6-difluorophenyl)-1-(4-(5-(2-hydroxy-1-((4-
12.72
550.0



(trifluoromethyl)pyridin-2-yl)amino)propan-2-



yl)-2-methylpyrimidin-4-yl)piperidin-1-



yl)ethanone


D9
2-(2,6-difluorophenyl)-1-(4-(5-(2-hydroxy-1-((4-
9.42
496.0



methylpyridin-2-yl)amino)propan-2-yl)-2-



methylpyrimidin-4-yl)piperidin-1-yl)ethanone


D10
2-(2,6-difluorophenyl)-1-(4-(5-(2-hydroxy-1-((1-
9.60
485.2



methyl-1H-pyrazol-3-yl)amino)propan-2-yl)-2-



methylpyrimidin-4-yl)piperidin-1-yl)ethanone









HPLC Conditions Used to Determine Retention Times:





    • Unless otherwise noted: YMC C18, 5μ 150×4.6 mm column, gradient 10% to 90% MeCN/H2O, in the presence of 0.1% TFA, 25 min gradient time, 27 min total run time at 1.5 mL/min flow rate, λ=254 nM

    • * Phenomenex, Gemini, 50×4.6 mm, 5μ column, gradient 10% to 90% MeCN/H2O, in the presence of 0.1% TFA, 5 min gradient time, 6 min total run time at 3.0 mL/min flow rate, λ=254 nM





Compound D11—2-(2,6-Difluorophenyl)-1-(4-(5-(1-(3,5-dimethylphenoxy)-2-hydroxypropan-2-yl)-2-methylpyrimidin-4-yl)piperidin-1-yl)ethanone
D11.1: tert-Butyl 4-(5-(1-(3,5-dimethylphenoxy)-2-hydroxypropan-2-yl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate

To a solution of 3,5-dimethylphenol (244 mg, 2.0 mmol) in DMF (4 mL) was added NaH (120 mg, 3 mmol, 60% in mineral oil). The resulting mixture was stirred at room temperature for 30 min, then D1.1 (1 mmol) was added. The mixture was stirred at 75° C. for 8 h, cooled to room temperature and diluted with aq. sat. NaHCO3. The crude product was extracted with EtOAc, washed with brine, and concentrated. The crude product was purified by flash column chromatography.


Compound D11

To a solution of D11.1 (400 mg, 0.87 mmol) in MeOH (5 mL) was added 4N HCl in dioxane (1 mL). The resulting solution was stirred for 12 h at room temperature. EtOAc (25 mL) was added. The mixture was basified with 20% NaOH aq. solution to pH 10. The EtOAc layer was washed with brine, dried over sodium sulfate, and concentrated. The crude amine was used in the next step without further purification.


1-(3,5-Dimethylphenoxy)-2-(2-methyl-4-(piperidin-4-yl)pyrimidin-5-yl)propan-2-ol (220 mg, 0.61 mmol) obtained above was mixed with 2,6-difluorophenylacetic acid (123 mg, 0.72 mmol), HATU (300 mg, 0.78 mmol) and DIEA (387 mg, 3 mmol) in THF (5 mL). The resulting reaction mixture was stirred at room temperature for 2 h then diluted with aq. sat. NaHCO3. The mixture was extracted with EtOAc and the organic mixture was dried over sodium sulfate, filtered, and concentrated. The crude mixture was purified by prep HPLC to give Compound D11. 1H-NMR (400 MHz, DMSO-d6): δ 8.56 (d, 1H), 7.36 (m, 1H), 7.07 (m, 2H), 6.55 (m, 3H), 5.70 (s, 1H), 4.45 (d, 1H), 4.18 (m, 3H), 3.78 (m, 3H), 3.17 (m, 1H), 2.62 (m, 1H), 2.55 (s, 3H), 2.21 (s, 6H), 1.75 (m, 4H), 1.65 (s, 3H). MS (EI) for C29H33F2N3O3. found: 510.0 (MH+). Analytical HPLC, ret. time=17.17 min, 97% purity.


Compounds D12-D14

Compounds D12 to D14 were prepared from methods analogous to those used to prepare Compound D11 utilizing appropriate reagent replacements.

















HPLC
Mass




Retention
Report-




Time
ed


Cpd
Chemical Name
(min)
(MH+)


















D12
1-(4-(5-(1-(3-chlorophenoxy)-2-
16.49
516.0



hydroxypropan-2-yl)-2-methylpyrimidin-4-



yl)piperidin-1-yl)-2-(2,6-



difluorophenyl)ethanone


D13
1-(4-(5-(1-((5-chloropyridin-3-yl)oxy)-2-
3.17*
517.0



hydroxypropan-2-yl)-2-methylpyrimidin-4-



yl)piperidin-1-yl)-2-(2,6-



difluorophenyl)ethanone


D14
2-(2,6-difluorophenyl)-1-(4-(5-(2-hydroxy-1-
8.74
483.0



(pyridin-3-yloxy)propan-2-yl)-2-



methylpyrimidin-4-yl)piperidin-1-



yl)ethanone









HPLC Conditions Used to Determine Retention Times:





    • Unless otherwise noted: YMC C18, 5μ 150×4.6 mm column, gradient 10% to 90% MeCN/H2O, in the presence of 0.1% TFA, 25 min gradient time, 27 min total run time at 1.5 mL/min flow rate, λ=254 nM

    • * Phenomenex, Gemini, 50×4.6 mm, 5μ column, gradient 10% to 90% MeCN/H2O, in the presence of 0.1% TFA, 5 min gradient time, 6 min total run time at 3.0 mL/min flow rate, λ=254 nM





Compound D15—2-(2,6-Difluorophenyl)-1-(4-(5-(4-(3,5-dimethylphenyl)-2-hydroxybutan-2-yl)-2-methylpyrimidin-4-yl)piperidin-1-yl)ethanone
D15.1: tert-Butyl 4-(5-(2-bromoacetyl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate

D15.1 was synthesized from B23.1 in the same manner by which B35.4 was synthesized from B35.3.


D15.2: (E)-tert-Butyl 4-(5-(3-(3,5-dimethylphenyl)acryloyl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate

To a stirred solution diethyl phosphite (22.2 mg, 0.161 mmol) in DMF (1 mL) at room temperature was added cesium carbonate (105 mg, 0.322 mmol). After stirring 30 min, D15.1 (53.4 mg, 0.134 mmol) in DMF (1 mL) was added. After stirring 70 min, water (2 mL) was added and the resulting solution was extracted with EtOAc (3×2 mL). The combined organic layers were concentrated to give D15.2 as a brown oil. MS (EI) for C21H34N3O6P. found 456.0 (MH+).


D15.3: (E)-tert-Butyl 4-(5-(3-(3,5-dimethylphenyl)acryloyl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate

To a stirred solution of D15.2, LiCl (18.2 mg, 0.429 mmol) and MeCN (1 mL) at room temperature were added DIEA (50 μL, 0.27 mmol) and 3,5-dimethylbenzaldehyde (17.8 mg, 0.134 mmol) in MeCN (0.5 mL) in sequence. After stirring for 24 h at 95° C., water (2 mL) was added and the resulting solution was extracted with EtOAc (2×2 mL). The combined organic layers were concentrated and purified by silica gel column chromatography (hexane/EtOAc=3:1) to give D15.3 (10 mg, 17%) as a pale yellow oil. MS (EI) for C269H33N3O3. found 436.1 (MH+).


D15.4: tert-Butyl 4-(5-(4-(3,5-dimethylphenyl)-2-hydroxybutan-2-yl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate

A mixture of D15.3 (15.0 mg, 0.0344 mmol), Pd/C (18.0 mg, 10 wt. %, 0.0172 mmol) and MeOH (2 mL) was stirred for 1 h at room temperature under a balloon of hydrogen. The mixture was filtered through Celite and the filtrate was concentrated. The residue was dissolved in EtOAc (1 mL) and the resulting solution was filtered and concentrated to give tert-butyl 4-(5-(3-(3,5-dimethylphenyl)propanoyl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate (10 mg, 66%) as a clear oil.


To a stirred solution of tert-butyl 4-(5-(3-(3,5-dimethylphenyl)propanoyl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate (9.0 mg, 0.021 mmol) in THF (0.4 mL) at room temperature was added methylmagnesium bromide (0.12 mL, 1.4M in Toluene/THF (3:1), 0.16 mmol). After stirring for 4 h at 50° C., aq. sat. NH4Cl (2 mL) was added and the resulting solution was extracted with EtOAc (3×1.5 mL). The combined organic layers were concentrated and purified by silica gel column chromatography (hexane/EtOAc=3:1→3:4) to give D15.4 (6.0 mg, 64%) as a clear oil. MS (EI) for C27H39N3O3. found 454.1 (MH+).


Compound D15

A mixture of D15.4 (6.0 mg, 0.0132 mmol) and 4N HCl in 1,4-dioxane (0.3 mL) was stirred for 1 h at room temperature, and concentrated under vacuum. EtOAc (1 mL) was added and the mixture was concentrated again to give the amine HCl salt, 4-(3,5-dimethylphenyl)-2-(2-methyl-4-(piperidin-4-yl)pyrimidin-5-yl)butan-2-ol. MS (EI) for C22H31N3O. found 354.1 (MH+). To a stirred solution of the resulting amine HCl salt, 2-(2,6-difluorophenyl)acetic acid (3.4 mg, 0.020 mmol), HATU (15.0 mg, 0.0396 mmol) and DMF (0.3 mL) at room temperature was added DIEA (10 μL, 0.053 mmol). After stirring for 1 h, water (1 mL) was added and the resulting solution was extracted with EtOAc (3×2 mL). The combined organic layers were concentrated and purified by silica gel column chromatography (hexane/EtOAc=2:5→1:3) to give Compound D15 (4.7 mg, 69%) as a white powder after lyophilization. 1H-NMR (400 MHz, CDCl3): δ 8.60 (s, 1H), 7.22 (m, 1H), 6.90 (t, 2H), 6.83 (s, 1H), 6.72 (s, 2H), 4.76 (d, 1H), 4.11 (d, 1H), 3.77 (d, 2H), 3.68 (m, 1H), 3.21 (m, 1H), 2.68 (s, 3H), 2.67 (m, 1H), 2.52 (t, 2H), 2.31-1.97 (m, 4H), 2.27 (s, 6H), 1.72 (s, 3H), 1.71 (m, 2H). MS (EI) for C30H35F2N3O2. found 508.1 (MH+). Analytical HPLC, ret. time=16.556 min, 96% purity.


Compound E1—2-(2,6-Difluorophenyl)-1-(4-(5-(2-(3,5-dimethylbenzyloxy)-1-methoxypropan-2-yl)-2-methylpyrimidin-4-yl)piperidin-1-yl)ethanone
E1.1: tert-Butyl 4-(5-(2-hydroxy-1-methoxypropan-2-yl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate

To a freshly prepared MeONa (5 mmol) solution in MeOH (5 mL) was added D1.1 (166 mg, 0.5 mmol). The resulting solution was stirred at 60° C. for 12 h and cooled to room temperature. Water was added to quench the reaction. The mixture was extracted with EtOAc and the organic phase was washed with brine, dried over sodium sulfate, and concentrated. The crude product was purified by flash column chromatography.


E1.2: tert-Butyl 4-(5-(2-(3,5-dimethylbenzyloxy)-1-methoxypropan-2-yl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate

To a solution of E1.1 (150 mg, 0.42 mmol), 3,5-dimethylbenzyl bromide (109 mg, 0.55 mmol) and Bu4NI (30 mg, 0.08 mmol) in THF (5 mL) was added NaH (50 mg, 1.2 mmol, 60% in mineral oil). The resulting mixture was stirred at room temperature for 12 h. Water was added to quench the reaction. The mixture was extracted with EtOAc and the organic mixture was dried over sodium sulfate, filtered, and concentrated. The crude mixture was purified by flash column chromatography.


Compound E1

To a solution of E1.2 (150 mg, 0.31 mmol) in MeOH (2 mL) was added 4N HCl in dioxane (0.5 mL). The resulting solution was stirred for 12 h at room temperature. EtOAc (25 mL) was added. The mixture was basified with 20% NaOH aq. solution to pH 10. The EtOAc layer was washed with brine, dried over sodium sulfate, and concentrated. The crude product was used in the next step without further purification.


5-(2-(3,5-Dimethylbenzyloxy)-1-methoxypropan-2-yl)-2-methyl-4-(piperidin-4-yl)pyrimidine (100 mg, 0.26 mmol) obtained above was mixed with 2,6-difluorophenylacetic acid (54 mg, 0.31 mmol), HATU (128 mg, 0.34 mmol) and DIEA (129 mg, 1 mmol) in THF (2 mL). The resulting reaction mixture was stirred at room temperature for 2 h, then diluted with aq. sat. NaHCO3. The mixture was extracted with EtOAc and the organic mixture was dried over sodium sulfate, filtered, and concentrated. The crude mixture was purified by prep HPLC to give Compound E1. MS (EI) for C31H37F2N3O3. found: 538.1 (MH+). Analytical HPLC, ret. time=20.20 min, 97% purity.


Compounds E2-E4

Compounds E2 to E4 were prepared from methods analogous to those used to prepare Compound E1 utilizing appropriate reagent replacements.

















HPLC





Reten-
Mass




tion
Report-




Time
ed


Cpd
Chemical Name
(min)
(MH+)


















E2
2-(2,6-difluorophenyl)-1-(4-(5-(2-((3,5-
21.30
552.1



dimethylbenzyl)oxy)-1-ethoxypropan-2-yl)-2-



methylpyrimidin-4-yl)piperidin-1-yl)ethanone


E3
2-(2,6-difluorophenyl)-1-(4-(5-(1-(2,3-
15.14
598.1



dihydroxypropoxy)-2-((3,5-



dimethylbenzyl)oxy)propan-2-yl)-2-



methylpyrimidin-4-yl)piperidin-1-yl)ethanone


E4
2-(2,6-difluorophenyl)-1-(4-(5-(2-((3,5-
3.79*
524.0



dimethylbenzyl)oxy)-1-hydroxypropan-2-yl)-2-



methylpyrimidin-4-yl)piperidin-1-yl)ethanone









HPLC Conditions Used to Determine Retention Times:





    • Unless otherwise noted: YMC C18, 5μ 150×4.6 mm column, gradient 10% to 90% MeCN/H2O, in the presence of 0.1% TFA, 25 min gradient time, 27 min total run time at 1.5 mL/min flow rate, λ=254 nM

    • * Phenomenex, Gemini, 50×4.6 mm, 5μ column, gradient 10% to 90% MeCN/H2O, in the presence of 0.1% TFA, 5 min gradient time, 6 min total run time at 3.0 mL/min flow rate, λ=254 nM





Compound E5—2-(2,6-Difluorophenyl)-1-(4-(5-(2-(3,5-dimethylbenzyloxy)propan-2-yl)-2-methylpyrimidin-4-yl)piperidin-1-yl)ethanone
E5.1: 2-(2,6-Difluorophenyl)-1-(4-(5-(2-hydroxypropan-2-yl)-2-methylpyrimidin-4-yl)piperidin-1-yl)ethanone

To a 0° C. solution of B1.3 (280 mg, 0.76 mmol) in THF (1 mL) was added MeMgBr (1 mL, 1.52 mmol, 1.4 M in THF). The reaction was quenched by water after 15 min. The mixture was extracted with EtOAc and the organic mixture was dried over sodium sulfate, filtered, and concentrated. The crude mixture was purified by flash column chromatography to give desired alcohol E5.1.


Compound E5

To a solution of E5.1 (69 mg, 0.18 mmol), 3,5-dimethylbenzyl bromide (46 mg, 0.23 mmol) and Bu4NI (13 mg, 0.036 mmol) in THF (2 mL) was added NaH (22 mg, 0.54 mmol, 60% in mineral oil). The resulting mixture was stirred at room temperature for 12 h. Water was added to quench the reaction. The mixture was extracted with EtOAc and the organic mixture was dried over sodium sulfate, filtered, and concentrated. The crude mixture was purified by HPLC to give Compound E5. MS (EI) for C30H35F2N3O2. found: 508.1 (MH+). Analytical HPLC, ret. time=20.40 min, 90% purity.


Compounds E6-E7

Compounds E6 and E7 were prepared from methods analogous to those used to prepare Compound E5 utilizing appropriate reagent replacements.

















HPLC





Reten-
Mass




tion
Report-




Time
ed


Cpd
Chemical Name
(min)
(MH+)







E6
1-(4-(5-(2-((3-chlorobenzyl)oxy)propan-2-yl)-
19.76
514.0



2-methylpyrimidin-4-yl)piperidin-1-yl)-2-(2,6-



difluorophenyl)ethanone


E7
1-(4-(5-(2-((6-chloropyridin-2-
16.58
515.0



yl)methoxy)propan-2-yl)-2-methylpyrimidin-4-



yl)piperidin-1-yl)-2-(2,6-



difluorophenyl)ethanone










HPLC conditions used to determine retention times: YMC C18, 5μ 150×4.6 mm column, gradient 10% to 90% MeCN/H2O, in the presence of 0.1% TFA, 25 min gradient time, 27 min total run time at 1.5 mL/min flow rate, λ=254 nM


Compound E8—2-(2,6-Difluorophenyl)-1-(4-(5-(1-(2,3-dihydroxypropoxy)-2-(3,5-dimethylbenzyloxy)propan-2-yl)-2-methylpyrimidin-4-yl)piperidin-1-yl)ethanone E8.1: tert-Butyl 4-(5-(1-((2,2-dimethyl-1,3-dioxolan-4-yl)methoxy)-2-hydroxypropan-2-yl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate

Sodium (100 mg, 4.3 mmol) was added to ice-water cooled (R)-1,2-isopropylideneglycerol (1.5 mL). The mixture was stirred for 15 min. To the prepared sodium alkoxide solution was added D1.1 (143 mg, 0.43 mmol). The resulting solution was stirred at 65° C. for 12 h. Water was added to the cooled reaction mixture. It was then extracted with EtOAc, washed with NaHCO3, dried over sodium sulfate, and concentrated. The crude product was purified by flash column chromatography.


E8.2: tert-Butyl 4-(5-(1-((2,2-dimethyl-1,3-dioxolan-4-yl)methoxy)-2-(3,5-dimethylbenzyloxy)propan-2-yl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate

To a solution of E8.1 (210 mg, 0.45 mmol), 3,5-dimethylbenzyl bromide (115 mg, 0.57 mmol) and Bu4NI (25 mg, 0.07 mmol) in THF (5 mL) was added NaH (54 mg, 1.35 mmol, 60% in mineral oil). The resulting mixture was stirred at room temperature for 12 h. Water was added to quench the reaction. The mixture was extracted with EtOAc and the organic mixture was dried over sodium sulfate, filtered, and concentrated. The crude mixture was purified by flash column chromatography.


Compound E8

To a solution of E8.2 (230 mg, 0.39 mmol) in MeOH (5 mL) was added 4N HCl in dioxane (1 mL). The resulting solution was stirred for 12 h at room temperature. EtOAc (25 mL) was added. The mixture was basified with 20% NaOH aq. solution to pH 10. The EtOAc layer was washed with brine, dried over sodium sulfate, and concentrated. The resulting crude amine (0.39 mmol) obtained was mixed with 2,6-difluorophenylacetic acid (67 mg, 0.39 mmol), HATU (177 mg, 0.45 mmol) and DIEA (129 mg, 1 mmol) in THF (5 mL). The resulting reaction mixture was stirred at room temperature for 2 h then diluted with aq. sat. NaHCO3. The mixture was extracted with EtOAc and the organic mixture was dried over sodium sulfate, filtered, and concentrated. The crude mixture was purified by prep HPLC to give Compound E8 as a mixture of diastereomers. MS (EI) for C33H41F2N3O5. found: 598.0 (MH+). Analytical HPLC, ret. time=15.20 min, 95% purity.


Compound E9—2-(2,6-Difluorophenyl)-1-(4-(5-(1-((R)-2,3-dihydroxypropoxy)-2-(3,5-dimethylbenzyloxy)propan-2-yl)-2-methylpyrimidin-4-yl)piperidin-1-yl)ethanone

Compound E9 (as a mixture of diastereomers) was synthesized from D1.1 in the same manner as Compound E8. MS (EI) for C33H41F2N3O5. found: 598.1 (MH+). Analytical HPLC, ret. time=15.14 min, 98% purity.


Compound E10—2-(2,6-Difluorophenyl)-1-(4-(5-((3,5-dimethylbenzyloxy)methyl)-2-methylpyrimidin-4-yl)piperidin-1-yl)ethanone
E10.1: 1-(4-(5-(Chloromethyl)-2-methylpyrimidin-4-yl)piperidin-1-yl)-2-(2,6-difluorophenyl)ethanone

To a stirred solution of A1.4 (200 mg, 0.496 mmol) in THF (3 mL) at 0° C. was added LiAlH4 (0.40 mL, 1M in THF, 0.396 mmol). After stirring for 2.5 h at 0° C., Et2O (4 mL), water (0.02 mL), 5% NaOH (0.06 mL) and water (0.02 mL) were added in sequence at room temperature with vigorous stirring. The resulting mixture was stirred for additional 2 h at room temperature and then EtOAc (3 mL) was added. The resulting mixture was filtered through Celite, concentrated and purified by silica gel column chromatography (EtOAc/7N NH3 in MeOH=30:1→20:1) to give 2-(2,6-difluorophenyl)-1-(4-(5-(hydroxymethyl)-2-methylpyrimidin-4-yl)piperidin-1-yl)ethanone (95 mg, 53%) as a pale yellow solid. MS (EI) for C19H21F2N3O2. found 362.1 (MH+).


To a stirred solution of 2-(2,6-difluorophenyl)-1-(4-(5-(hydroxymethyl)-2-methylpyrimidin-4-yl)piperidin-1-yl)ethanone (20.0 mg, 0.0553 mmol) in CH2Cl2 (1 mL) at room temperature were added Et3N (20 μL, 0.17 mmol), TsCl (13.7 mg, 0.0719 mmol) and N,N-dimethylaminopyridine (DMAP) (0.7 mg, 0.006 mmol) in sequence. After stirring for 5 h, aq. sat. NH4Cl (2 mL) was added and the resulting solution was extracted with EtOAc (2×2 mL). The combined organic layers were concentrated and purified by silica gel column chromatography (hexane/EtOAc=1:2) to give E10.1 (10.0 mg, 48%) as a white solid. MS (EI) for C19H20ClF2N3O. found 380.0 (MH+).


Compound E10

A mixture of (3,5-dimethylphenyl)methanol (5.4 mg, 0.040 mmol), NaH (1.6 mg, 60% dispersion in mineral oil, 0.40 mmol) and DMF (0.3 mL) was stirred for 10 min at room temperature. A solution of E10.1 (10.0 mg, 0.0263 mmol) in DMF (1 mL) was added. After stirring for 1 h at 50° C., the reaction mixture was quenched with aq. sat. NH4C (1 mL) and then extracted with EtOAc (2×2 mL). The combined organic layers were concentrated and purified by silica gel column chromatography (hexane/EtOAc=2:3) to give Compound E10 (3.1 mg, 25%) as a white solid. 1H-NMR (400 MHz, CDCl3): δ 8.48 (s, 1H), 7.23 (m, 1H), 6.97 (m, 3H), 6.91 (t, 2H), 4.73 (d, 1H), 4.51 (s, 2H), 4.50 (d, 2H), 4.11 (d, 1H), 3.76 (s, 2H), 3.16 (td, 1H), 3.07 (tt, 1H), 2.69 (s, 3H), 2.63 (td, 1H), 2.33 (s, 6H), 2.04 (qd, 1H), 1.89 (qd, 1H), 1.75 (m, 2H). MS (EI) for C28H31F2N3O2. found 480.1 (MH+). Analytical HPLC, ret. time=18.704 min, 95% purity.


Compound E11—2-(2,6-Difluorophenyl)-1-(4-(5-(1-(3,5-dimethylbenzyloxy)ethyl)-2-methylpyrimidin-4-yl)piperidin-1-yl)ethanone
E11.1: 2-(2,6-Difluorophenyl)-1-(4-(5-(1-hydroxyethyl)-2-methylpyrimidin-4-yl)piperidin-1-yl)ethanone

To a 0° C. solution of B3.1 (172 mg, 0.45 mmol) in MeOH (3 mL) was added NaBH4 (52 mg, 1.4 mmol). The reaction was quenched by water after 30 min. The mixture was extracted with EtOAc and the organic mixture was dried over sodium sulfate, filtered, and concentrated. The crude mixture was used in the next step without further purification.


Compound E11

To a solution of E11.1 (160 mg, 0.42 mmol), 3,5-dimethylbenzyl bromide (109 mg, 0.55 mmol) and Bu4NI (30 mg, 0.08 mmol) in THF (5 mL) was added NaH (42 mg, 1 mmol, 60% in mineral oil). The resulting mixture was stirred at room temperature for 12 h. Water was added to quench the reaction. The mixture was extracted with EtOAc and the organic mixture was dried over sodium sulfate, filtered, and concentrated. The crude mixture was purified by HPLC to give Compound E11. 1H-NMR (400 MHz, DMSO-d6): δ 8.61 (s, 1H), 7.35 (m, 1H), 7.07 (m, 2H), 6.86 (m, 3H), 4.84 (m, 1H), 4.45 (d, 1H), 4.31 (m, 2H), 4.12 (d, 1H), 3.78 (m, 2H), 3.17 (m, 2H), 2.62 (m, 1H), 2.55 (s, 3H), 2.21 (s, 6H), 1.63 (m, 4H), 1.45 (d, 3H). MS (EI) for C29H33F2N3O2. found: 494.0 (MH+). Analytical HPLC, ret. time=22.52 min, 90% purity.


Compound F1—2-(2,6-Difluorophenyl)-1-(4-(2-methyl-5-(2-methyl-1-(2-(trifluoromethyl)pyrimidin-4-ylamino)propan-2-yl)pyrimidin-4-yl)piperidin-1-yl)ethanone
F1.1: tert-Butyl 4-(5-(cyanomethyl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate

To a −78° C. solution of A1.2 (13 g, 37 mmol) in THF (125 mL) was added dropwise LAH (28 mL, 1 M in THF). The solution was stirred at −78° C. for additional 30 min after the addition. It was then warmed to 0° C. The stirring was continued for 10 min and the reaction was quenched by slow addition of water (1.5 mL), 4 N NaOH (2.5 mL) and water (4.5 mL). The mixture was filtered through Celite, which was washed with EtOAc. Concentration of the EtOAc solution gave the crude alcohol (tert-butyl 4-(5-(hydroxymethyl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate), which was purified by flash column chromatography.


To a 0° C. solution of tert-butyl 4-(5-(hydroxymethyl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate (7.15 g, 23 mmol) and Et3N (4.7 g, 46 mmol) in THF (100 mL) was added methanesulfonylchloride (MsCl) (3.14 g, 28 mmol). The mixture was stirred for 30 min after the addition, then quenched with water and extracted with EtOAc. The organic layer was washed with NaHCO3, brine, and dried over sodium sulfate. Concentration gave the crude mesylate (tert-butyl 4-(2-methyl-5-((methylsulfonyloxy)methyl)pyrimidin-4-yl)piperidine-1-carboxylate), which was used in the next step.


A mixture of KCN (1.8 g, 28 mmol) and Bu4NBr (9.0 g, 28 mmol) in DMF (25 mL) was stirred at 40° C. for 3 h. The crude mesylate (˜22 mmol) was added as a solution in DMF (15 mL). The reaction mixture was stirred at 40° C. for 2 days, then cooled to room temperature. Water (50 mL) was added and the crude product was extracted with EtOAc. The organic layer was washed with NaHCO3, brine, dried over sodium sulfate, and concentrated. The crude product was purified by flash column chromatography to give F1.1.


F1.2: tert-Butyl 4-(5-(1-amino-2-methylpropan-2-yl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate

To a 0° C. solution of F1.1 (670 mg, 2.1 mmol) and MeI (898 mg, 6.3 mmol) in DMF (10 mL) was added tBuOK (716 mg, 6.3 mmol). The reaction mixture was stirred for 30 min, and quenched with water (10 mL). The mixture was extracted with EtOAc. The organic layer was washed with NaHCO3, brine, dried over sodium sulfate, and concentrated. The crude product was purified by flash column chromatography to give tert-butyl 4-(5-(2-cyanopropan-2-yl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate.


To a 250 mL hydrogenation flask were added tert-butyl 4-(5-(2-cyanopropan-2-yl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate (103 mg, 0.3 mmol), methanolic ammonia (3 N, 20 mL), and Raney nickel (100 mg, Raney 2800 Ni slurry in water). The flask was transferred to a Parr shaker type hydrogenation apparatus, charged with hydrogen (40 psi), and was shaken for 4 h. The catalyst was removed by filtration through Celite (washing with MeOH), and the solution was concentrated in vacuo to afford F1.2.


F1.3: tert-Butyl 4-(2-methyl-5-(2-methyl-1-(2-(trifluoromethyl)pyrimidin-4-ylamino)propan-2-yl)pyrimidin-4-yl)piperidine-1-carboxylate

F1.2 (100 mg, 0.28 mmol), 4-chloro-2-(trifluoromethyl)pyrimidine (51 mg, 0.28 mmol) and DIEA (112 mg, 0.86 mmol) were mixed in MeCN (3 mL). The resulting solution was stirred at 50° C. for 12 h. The mixture was concentrated to dryness. The residue was dissolved in EtOAc, washed with NaHCO3 and brine. Concentration gave crude F1.3, which was used as is in the next step.


F1.4: N-(2-Methyl-2-(2-methyl-4-(piperidin-4-yl)pyrimidin-5-yl)propyl)-2-(trifluoromethyl)pyrimidin-4-amine

To a solution of the crude F1.3 in MeOH (2 mL) was added 4N HCl in dioxane (0.3 mL). The resulting solution was stirred for 12 h at room temperature. EtOAc (25 mL) was added. The mixture was basified with 20% NaOH aq. solution to pH 10. The EtOAc layer was washed with brine, dried over sodium sulfate, and concentrated to give F1.4. The crude product was used in the next step without further purification.


Compound F1

F1.4 (100 mg, 0.25 mmol) was mixed with 2,6-difluorophenylacetic acid (52 mg, 0.3 mmol), HATU (114 mg, 0.3 mmol) and DIEA (129 mg, 1 mmol) in THF (2 mL). The resulting reaction mixture was stirred at room temperature for 2 h then diluted with aq. sat. NaHCO3. The mixture was extracted with EtOAc and the organic mixture was dried over sodium sulfate, filtered, and concentrated. The crude mixture was purified by prep HPLC to give Compound F1. MS (EI) for C27H29F5N6O. found: 549.0 (MH+). Analytical HPLC, ret. time=3.30 min, 98% purity.


Compound F2-F3

Compounds F2 to F3 were prepared from methods analogous to those used to prepare Compound F1 utilizing appropriate reagent replacements.

















HPLC





Reten-
Mass




tion
Report-




Time
ed


Cpd
Chemical Name
(min)
(MH+)







F2
2-(2,6-difluorophenyl)-1-(4-(2-methyl-5-(2-
16.48
549.0



methyl-1-((4-(trifluoromethyl)pyrimidin-2-



yl)amino)propan-2-yl)pyrimidin-4-yl)piperidin-



1-yl)ethanone


F3
N-[2-(4-{1-[(2,6-
14.56
548.2



difluorophenyl)acetyl]piperidin-4-yl}-2-



methylpyrimidin-5-yl)-2-methylpropyl]-6-



(trifluoromethyl)pyridin-2-amine










HPLC conditions used to determine retention times: YMC C18, 5μ 150×4.6 mm column, gradient 10% to 90% MeCN/H2O, in the presence of 0.1% TFA, 25 min gradient time, 27 min total run time at 1.5 mL/min flow rate, λ=254 nM


Compound F4—Methyl 2-(4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-yl)-2-methylpyrimidin-5-yl)-2-methyl-3-(2-(trifluoromethyl)pyrimidin-4-ylamino)propanoate
F4.1: tert-Butyl 4-(5-(1-cyano-2-methoxy-2-oxoethyl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate

To a solution of F1.1 (570 mg, 1.79 mmol) in dimethylcarbonate (3 mL) was added MeONa (194 mg, 3.6 mmol). The resulting solution was stirred at room temperature for 2 h. The reaction was quenched with water and extracted with EtOAc. The organic phase was dried over sodium sulfate, filtered, and concentrated. The crude product was purified by flash column chromatography to give F4.1.


F4.2: tert-Butyl 4-(5-(2-cyano-1-methoxy-1-oxopropan-2-yl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate

To a solution of F4.1 (370 mg, 1 mmol) and MeI (283 mg, 2 mmol) in DMF (5 mL) was added tBuOK (224 mg, 2 mmol). The reaction mixture was stirred for 12 h, and quenched with water (10 mL). The mixture was extracted with EtOAc. The organic layer was washed with NaHCO3, brine, dried over sodium sulfate, and concentrated. The crude product was purified by flash column chromatography.


F4.3: tert-Butyl 4-(5-(1-methoxy-2-methyl-1-oxo-3-(2-(trifluoromethyl)pyrimidin-4-ylamino)propan-2-yl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate

To a 250 mL hydrogenation flask were added F4.2 (200 mg, 0.5 mmol), methanolic ammonia (3 N, 10 mL), and Raney nickel (100 mg, Raney 2800 Ni slurry in water). The flask was transferred to a Parr shaker type hydrogenation apparatus, charged with hydrogen (40 psi), and was shaken for 4 h. The catalyst was removed by filtration through Celite (washing with MeOH), and the solution was concentrated in vacuo to afford tert-butyl 4-(5-(3-amino-1-methoxy-2-methyl-1-oxopropan-2-yl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate.


Tert-butyl 4-(5-(3-amino-1-methoxy-2-methyl-1-oxopropan-2-yl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate (130 mg, 0.33 mmol), 4-chloro-2-(trifluoromethyl)pyrimidine (73 mg, 0.33 mmol) and DIEA (129 mg, 1 mmol) were mixed in MeCN (3 mL). The resulting solution was stirred at 50° C. for 12 h. The mixture was concentrated to dryness. The residue was dissolved in EtOAc, washed with NaHCO3 and brine. Concentration gave the crude product, which was purified by flash column chromatography to give F4.3.


Compound F4

To a solution of F4.3 (100 mg, 0.18 mmol) in MeOH (2 mL) was added 4N HCl in dioxane (0.3 mL). The resulting solution was stirred for 12 h at room temperature. EtOAc (25 mL) was added. The mixture was basified with 20% NaOH aq. solution to pH 10. The EtOAc layer was washed with brine, dried over sodium sulfate, and concentrated. The crude product was used in the next step without further purification.


Methyl 2-methyl-2-(2-methyl-4-(piperidin-4-yl)pyrimidin-5-yl)-3-(2-(trifluoromethyl)pyrimidin-4-ylamino)propanoate (28 mg, 0.13 mmol) obtained above was mixed with 2,6-difluorophenylacetic acid (28 mg, 0.16 mmol), HATU (60 mg, 0.16 mmol) and DIEA (129 mg, 1 mmol) in THF (2 mL). The resulting reaction mixture was stirred at room temperature for 2 h then diluted with aq. sat. NaHCO3. The mixture was extracted with EtOAc and the organic mixture was dried over sodium sulfate, filtered, and concentrated. The crude mixture was purified by prep HPLC to give Compound F4. MS (EI) for C28H29F5N6O3. found: 593.2 (MH+). Analytical HPLC, ret. time=12.8 min, 94% purity.


Compound F5—2-(2,6-Difluorophenyl)-1-(4-(5-(1-hydroxy-2-methyl-3-(2-(trifluoromethyl)pyrimidin-4-ylamino)propan-2-yl)-2-methylpyrimidin-4-yl)piperidin-1-yl)ethanone

To a 0° C. solution of F4.4 (20 mg, 0.033 mmol) in THF (2 mL) was added LAH (0.033 mL, 2.0 M in THF). The resulting solution was stirred at room temperature for 30 min. The reaction mixture was quenched with aq. 10% NaOH solution, and filtered through Celite. The Celite pad was washed with EtOAc. The EtOAc solution was washed with brine, dried over sodium sulfate, and concentrated. The crude product was purified by prep HPLC to give Compound F5. MS (EI) for C27H29F5N6O2. found: 565.2 (MH+). Analytical HPLC, ret. time=10.56 min, 93% purity.


Compound F6—2-(2,6-Difluorophenyl)-1-(4-(5-((3,5-dimethylbenzylamino)methyl)-2-methylpyrimidin-4-yl)piperidin-1-yl)ethanone

To a stirred solution of E10.1 (9.0 mg, 0.024 mmol), (3,5-dimethylphenyl)methanamine (6.4 mg, 0.047 mmol) and DMF (0.5 mL) at room temperature was added DIEA (10 μL, 0.047 mmol). After stirring for 2 h at 50° C., aq. sat. NaHCO3 (1 mL) and water (1 mL) were added and the resulting solution was extracted with EtOAc (2×2 mL). The combined organic layers were concentrated and purified by silica gel column chromatography (EtOAc→EtOAc/MeOH=30:1) to give Compound F6 (8.5 mg, 75%) as a beige powder after lyophilization. 1H-NMR (400 MHz, CDCl3): δ 8.45 (s, 1H), 7.23 (m, 1H), 6.92 (m, 5H), 4.74 (d, 1H), 4.11 (d, 1H), 3.77 (s, 4H), 3.74 (s, 2H), 3.16 (m, 2H), 2.68 (s, 3H), 2.63 (td, 1H), 2.32 (s, 6H), 2.05 (qd, 1H), 1.88 (qd, 1H), 1.75 (m 2H). MS (EI) for C28H32F2N4O. found 479.1 (MH+). Analytical HPLC, ret. time=12.208 min, 97% purity.


Compound F7—2-(2,6-Difluorophenyl)-1-(4-(5-(1-(3,5-dimethylbenzylamino)-2,2,2-trifluoroethyl)-2-methylpyrimidin-4-yl)piperidin-1-yl)ethanone
F7.1: 1-(4-(1-(2-(2,6-Difluorophenyl)acetyl)piperidin-4-yl)-2-methylpyrimidin-5-yl)-2,2,2-trifluoroethanone

To a stirred solution of A1.4 (530 mg, 1.31 mmol) and trimethyl(trifluoromethyl)silane (280 mg, 1.97 mmol) in toluene (5 mL) at −78° C. was added Bu4NF (65 μL, 1M in THF, 0.065 mmol). The reaction mixture was warmed slowly to −5° C. for 40 min and then 2N HCl (1.2 mL) was added. After stirring for 1 h at room temperature, EtOAc (5 mL) was added. The organic layer was separated, concentrated, dissolved in THF (5 mL), and transferred to the aq. layer. After stirring for 2 h, water (2 mL) was added and the resulting solution was extracted with EtOAc (3×3 mL). The combined organic layers were concentrated and purified by silica gel column chromatography (hexane/EtOAc=1:1-1:2) to give F7.1 (205 mg, 37%) as a white foam. MS (EI) for C20H18F5N3O2. found 428.0 (MH+).


F7.2: 2-(2,6-Difluorophenyl)-1-(4-(2-methyl-5-(2,2,2-trifluoro-1-hydroxyethyl)pyrimidin-4-yl)piperidin-1-yl)ethanone

To a stirred solution of F7.1 (10.0 mg, 0.0234 mmol) in MeOH (0.5 mL) at room temperature was added NaBH4 (2.7 mg, 0.070 mmol). After stirring for 2 h, aq. sat. NH4Cl (2 mL) was added and the resulting solution was extracted with EtOAc (2×2 mL). The combined organic layers were concentrated and purified by silica gel column chromatography (hexane/EtOAc=3:4) to give F7.2 (9.0 mg, 90%) as a yellow oil. MS (EI) for C20H20F5N3O2. found 430.0 (MH+).


F7.3: 1-(4-(1-(2-(2,6-Difluorophenyl)acetyl)piperidin-4-yl)-2-methylpyrimidin-5-yl)-2,2,2-trifluoroethyl methanesulfonate

To a stirred solution of F7.2 (20.0 mg, 0.0466 mmol) in CH2Cl2 (1 mL) at room temperature were added Et3N (20 μL, 0.14 mmol) and methanesulfonyl chloride (7 μL, 0.09 mmol) in sequence. After stirring for 20 min, aq. sat. NH4Cl (2 mL) was added and the resulting solution was extracted with EtOAc (2×2 mL). The combined organic layers were concentrated and purified by silica gel column chromatography (hexane/EtOAc=4:3→1:1) to give F7.3 (22 mg, 93%) as a clear oil. MS (EI) for C21H22F5N3O4S. found 507.9 (MH+).


Compound F7

A mixture of F7.3 (19.0 mg, 0.0374 mmol) and (3,5-dimethylphenyl)methanamine (25.0 mg, 0.187 mmol) was stirred for 1 day at room temperature. Aq. sat. NH4Cl (2 mL) was added and the resulting solution was extracted with EtOAc (3×2 mL). The combined organic layers were concentrated and purified by silica gel column chromatography (hexane/EtOAc=2:1→3:2). The isolated material was further purified by prep HPLC to give Compound F7 (8.5 mg, 42%) as a white solid after lyophilization. 1H-NMR (400 MHz, CDCl3, rotameric mixture): δ 8.81 and 8.78 (two of s, 1H), 7.24 (m, 1H), 6.91 (m, 3H), 6.82 (m, 2H), 4.67 (two of d, 1H), 4.48 (m, 1H), 4.04 (two of d, 1H), 3.82 (dd, 1H), 3.74 (s, 2H), 3.60 (dd, 1H), 3.13-2.94 (m, 1H), 2.75 (m, 1H), 2.71 (s, 3H), 2.58-2.38 (m, 1H), 2.29 (two of s, 6H), 2.12 (m, 1H), 2.07-1.71 (m, 2H), 1.62 (m, 1H), 1.44-1.28 (m, 1H). MS (EI) for C29H31F5N4O. found 547.0 (MH+). Analytical HPLC, ret. time=19.952 min (gradient 10% to 100% MeCN/H2O), 98% purity.


Compound F8—N-(2,6-Difluorophenyl)-4-(2-methyl-5-(2-methyl-1-(2-(trifluoromethyl)pyrimidin-4-ylamino)propan-2-yl)pyrimidin-4-yl)piperidine-1-carboxamide

F1.4 (80 mg, 0.2 mmol), 2,6-difluorophenyl isocyanate (63 mg, 0.4 mmol) and Et3N (109 mg, 1 mmol) were mixed in acetone (2 mL). The solution was stirred at room temperature for 30 min and diluted with EtOAc (25 mL). The organic phase was washed with NaHCO3, brine, dried over sodium sulfate and concentrated. The crude mixture was purified by prep HPLC to give Compound F8. MS (EI) for C26H28F5N7O. found: 550.0 (MH+). Analytical HPLC, ret. time=2.98 min, 98% purity.


Compound F9—2-(2,6-Difluorophenyl)-1-(4-(5-(1-(3,5-dimethylbenzylamino)ethyl)-2-methylpyrimidin-4-yl)piperidin-1-yl)ethanone

B3.1 (278 mg, 0.77 mmol), 3,5-dimethylbenzylamine (105 mg, 0.77 mmol) and Ti(OiPr)4 (420 mg, 1.47 mmol) were mixed in THF (2 mL). The resulting mixture was stirred at room temperature for 8 h. NaBH4 (90 mg, 2.4 mmol) and EtOH (0.5 mL) were added. The stirring was continued for additional 4 h. Aq. sat. NaHCO3 was added to quench the reaction. The mixture was extracted with EtOAc and the organic phase was dried over sodium sulfate, filtered, and concentrated. The crude product was purified by prep HPLC to give Compound F9. 1H-NMR (400 MHz, DMSO-d6): δ 8.73 (s, 1H), 7.35 (m, 1H), 7.07 (m, 2H), 6.86 (m, 3H), 4.43 (d, 1H), 4.13 (d, 1H), 4.01 (m, 1H), 3.78 (m, 2H), 3.50 (m, 3H), 3.11 (m, 2H), 2.58 (s, 3H), 2.55 (m, 1H), 2.23 (d, 6H), 1.63 (m, 4H), 1.31 (d, 3H). MS (EI) for C29H34F2N4O. found: 493.1 (MH+). Analytical HPLC, ret. time=2.98 min, 99% purity.


Compound G1—N-(3-Chlorophenyl)-4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-yl)-2-methylpyrimidine-5-carbohydrazide

A1.5 (500 mg, 1.32 mmol) was mixed with (3-chlorophenyl)hydrazine (285 mg, 1.59 mmol) and DIEA (1.2 mL) in CH2Cl2 (10 mL). To this solution was added O-(benzotriazol-1-yl)-N,N,N′,N-tetramethyluronium tetrafluoroborate (TBTU) (550 mg, 1.71 mmol). The resulting reaction mixture was stirred at room temperature for 2 h then diluted with aq. sat. NaHCO3. The mixture was extracted with CH2Cl2 and the organic mixture was dried over sodium sulfate, filtered, and concentrated. The crude mixture was purified by flash column chromatography to give Compound G1. MS (EI) for C25H24ClF2N5O2. found: 500.1 (MH+). Analytical HPLC, ret. time=18.29 min, 97% purity.


Compounds G2-G4

Compounds G2 to G4 were prepared from methods analogous to those used to prepare Compound G1 utilizing appropriate reagent replacements.

















HPLC





Reten-
Mass




tion
Report-




Time
ed


Cpd
Chemical Name
(min)
(MH+)







G2
N′-(3-chlorophenyl)-2-cyclopropyl-4-(1-(2-(2,6-
3.86
526.0



difluorophenyl)acetyl)piperidin-4-



yl)pyrimidine-5-carbohydrazide


G3
N′-(3-chlorophenyl)-4-(1-(2-(2,6-
3.70
514.0



difluorophenyl)acetyl)piperidin-4-yl)-2-



ethylpyrimidine-5-carbohydrazide


G4
N′-(3-chlorophenyl)-4-(1-(2-(2,6-
3.88
514.0



difluorophenyl)acetyl)piperidin-4-yl)-2,6-



dimethylpyrimidine-5-carbohydrazide










HPLC conditions used to determine retention times: Phenomenex, Gemini, 50×4.6 mm, 5 column, gradient 10% to 90% MeCN/H2O, in the presence of 0.1% TFA, 5 min gradient time, 6 min total run time at 3.0 mL/min flow rate, λ=254 nM


Compound H1 4-{1-[(2,6-Difluorophenyl)acetyl]piperidin-4-yl}-2-methyl-N-{[3-(trifluoromethyl)-phenyl]oxy}pyrimidine-5-carboxamide

To a stirred solution of A1.5 (150 mg, 0.40 mmol), 0-(3-(trifluoromethyl)phenylhydroxylamine (78 mg, 0.44 mmol) and Et3N (279 μL, 2.0 mmol) in DMF (4 mL) was added HATU (168 mg, 0.44 mmol) and the reaction mixture was stirred at room temperature for 1 h. The reaction mixture was diluted with EtOAc, washed with aq. IN NaOH and brine, dried over sodium sulfate, and concentrated in vacuo. The residue was purified by flash chromatography to afford Compound H1 (52 mg, 24%) as a white powder after lyophilization. Analytical HPLC: retention time=14.312 min, 99%. 1H-NMR (400 MHz, CDCl3): δ 10.40 (br s, 1H), 8.68 (br s, 1H), 7.48-7.44 (m, 1H), 7.36-7.34 (m, 2H), 7.30-7.26 (m, 1H), 7.19-7.12 (m, 1H), 6.86-6.81 (m, 2H), 4.54 (d, 1H), 4.08 (d, 1H), 3.71 (s, 2H), 3.47 (br s, 1H), 3.20 (t, 1H), 2.74 (s, 3H), 2.63 (t, 1H), 2.03-1.90 (m, 2H), 1.84-1.74 (m, 2H). MS (EI) for C26H23F5N4O3. found 535.0 (MH+).


Compounds H2-H7

Compounds H2 to H7 were prepared from methods analogous to those used to prepare Compound H1 utilizing appropriate reagent replacements.

















HPLC





Reten-
Mass




tion
Report-




Time
ed


Cpd
Chemical Name
(min)
(MH+)


















H2
4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-
19.68
495.0



yl)-N-(3,5-dimethylphenoxy)-2-



methylpyrimidine-5-carboxamide


H3
N-(3-chlorophenoxy)-4-(1-(2-(2,6-
17.34
500.9



difluorophenyl)acetyl)piperidin-4-yl)-2-



methylpyrimidine-5-carboxamide


H4
4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-
18.60
551.0



yl)-2-methyl-N-(3-



(trifluoromethoxy)phenoxy)pyrimidine-5-



carboxamide


H5
N-(3-chlorophenoxy)-4-(1-(2-(2,6-
16.41
515.0



difluorophenyl)acetyl)piperidin-4-yl)-2,6-



dimethylpyrimidine-5-carboxamide


H6
N-(3-chloro-5-fluorophenoxy)-4-(1-(2-(2,6-
21.03
519.0



difluorophenyl)acetyl)piperidin-4-yl)-2-



methylpyrimidine-5-carboxamide


H7
4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-
3.87*
467.0



yl)-2-methyl-N-phenoxypyrimidine-5-



carboxamide









HPLC Conditions Used to Determine Retention Times:





    • Unless otherwise noted: YMC C18, 5μ 150×4.6 mm column, gradient 10% to 90% MeCN/H2O, in the presence of 0.1% TFA, 25 min gradient time, 27 min total run time at 1.5 mL/min flow rate, λ=254 nM

    • * Phenomenex, Gemini, 50×4.6 mm, 5μ column, gradient 10% to 90% MeCN/H2O, in the presence of 0.1% TFA, 5 min gradient time, 6 min total run time at 3.0 mL/min flow rate, λ=254 nM





Compound I1—4-{1-[(2,6-Difluorophenyl)acetyl]piperidin-4-yl}-2-methyl-6-oxo-N-{[6-(trifluoromethyl)pyridin-2-yl]methyl}-1,6-dihydropyrimidine-5-carboxamide
I1.1: 4-(1-(2-(2,6-Difluorophenyl)acetyl)piperidin-4-yl)-2-methyl-6-oxo-1,6-dihydropyrimidine-5-carboxylic acid

A108.3 (420 mg, 1 mmol) was mixed with NaOH (400 mg, 10 mmol) in MeOH/water (10 mL/5 mL). The resulting mixture was stirred at 85° C. for 2 h. The solution was concentrated, and acidified with conc. HCl. The product was precipitated, filtered, and dried.


Compound I1

To a mixture of I1.1 (85 mg, 0.22 mmol), HATU (107 mg, 0.28 mmol), and CH2Cl2 (1.5 mL) was added DIEA (112 mg, 0.87 mmol). The mixture was stirred at 35° C. for 30 min. To this mixture was added (6-(trifluoromethyl)pyridin-2-yl)methanamine hydrochloride (69 mg, 0.33 m mol). The resulting yellow solution was stirred at 35° C. for 14 h. After removal of solvent in vacuo, the residue was purified on prep HPLC to give 11.2 (64 mg). 1H-NMR (400 MHz, DMSO-d6): δ 12.5 (br. s. 1H), 9.22 (t, 1H), 8.10 (t, 1H), 7.82 (d, 1H), 7.78 (d, 1H), 7.33 (m, 1H), 7.05 (t, 2H), 4.57 (d, 2H), 4.40 (d, 1H), 4.10 (d, 1H), 3.74 (dd, 2H), 3.27 (m, 1H), 3.02 (t, 2H), 2.30 (s, 3H), 1.77 (m, 1H), 1.67-1.60 (m, 3H). Analytical HPLC, ret. time=13.72 min, 98% purity. MS (EI) for C26H24F5N5O3. found 550.0 (MH+).


Compound I2—4-{1-[(2,6-Difluorophenyl)acetyl]piperidin-4-yl}-2-methyl-N-{[2-(trifluoromethyl)pyridin-4-yl]methyl}-6-({[2-(trifluoromethyl)pyridin-4-yl]methyl}amino)pyrimidine-5-carboxamide

Compound I2 was recovered as a second product from the reaction that generated Compound I1 (9 mg recovered). 1H-NMR (400 MHz, DMSO-d6): δ 9.29 (br. s. 1H), 8.13 (t, 1H), 8.02 (t, 1H), 7.81 (d, 1H), 7.76 (d, 1H), 7.74 (d, 1H), 7.62 (d, 1H), 7.42 (br. s, 1H), 7.33 (m, 1H), 7.05 (t, 2H), 4.74 (s, 2H), 4.66 (d, 2H), 4.40 (d, 1H), 4.11 (d, 1H), 3.74 (dd, 2H), 2.96 (t, 2H), 2.81 (m, 1H), 2.30 (s, 3H), 1.81 (m, 1H), 1.71-1.63 (m, 3H). Analytical HPLC, ret. time=14.38 min, 97% purity. MS (EI) for C33H29F8N7O2. found 707.9 (MH+).


Compound I3—4-(1-(2-(2,6-Difluorophenyl)acetyl)piperidin-4-yl)-N-(3,5-dimethylbenzyl)-2-methyl-6-oxo-1,6-dihydropyrimidine-5-carboxamide

I1.1 (120 mg, 0.31 mmol) was mixed with 3,5-dimethylbenzylamine (67 mg, 0.5 mmol), HATU (130 mg, 0.34 mmol), and DIEA (0.5 mL) in THF (5 mL). The resulting reaction mixture was stirred at room temperature for 2 h then diluted with aq. sat. NaHCO3. The resulting mixture was extracted with CH2Cl2 and the organic mixture was dried over sodium sulfate, filtered, and concentrated. The crude mixture was purified by prep HPLC to give Compound I3. MS (EI) for C28H30ClF2N4O3. found: 509.0 (MH+). Analytical HPLC, ret. time=17.25 min, 94% purity.


Compounds 14-15

Compounds 14 and 15 were prepared from methods analogous to those used to prepare Compound I3 utilizing appropriate reagent replacements.

















HPLC





Reten-
Mass




tion
Report-




Time
ed


Cpd
Chemical Name
(min)
(MH+)


















I4
N-(3-chlorobenzyl)-4-(1-(2-(2,6-
3.41*
515.0



difluorophenyl)acetyl)piperidin-4-yl)-2-methyl-



6-oxo-1,6-dihydropyrimidine-5-carboxamide


I5
4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-
12.99
550.0



yl)-2-methyl-6-oxo-N-



((2-(trifluoromethyl)pyridin-



4-yl)methyl)-1,6-dihydropyrimidine-5-



carboxamide









HPLC Conditions Used to Determine Retention Times:





    • Unless otherwise noted: YMC C18, 5μ 150×4.6 mm column, gradient 10% to 90% MeCN/H2O, in the presence of 0.1% TFA, 25 min gradient time, 27 min total run time at 1.5 mL/min flow rate, λ=254 nM

    • * Phenomenex, Gemini, 50×4.6 mm, 5μ column, gradient 10% to 90% MeCN/H2O, in the presence of 0.1% TFA, 5 min gradient time, 6 min total run time at 3.0 mL/min flow rate, λ=254 nM





Compound I6—(E)-4-(1-(2-(2,6-Difluorophenyl)acetyl)piperidin-4-yl)-2-methyl-6-oxo-1,6-dihydropyrimidine-5-carbaldehyde O-3-(trifluoromethyl)phenyl oxime
I6.1: 4-(1-(2-(2,6-Difluorophenyl)acetyl)piperidin-4-yl)-2-methyl-6-oxo-1,6-dihydropyrimidine-5-carbaldehyde

I6.1 was synthesized from I1.1 in the same manner that B1.2 was synthesized from B1.1


Compound I6

Compound I6 was synthesized from I6.1 in the same manner that B30.2 was synthesized from B30.1. MS (EI) for C26H23F5N4O3. found: 534.9 (MH+). Analytical HPLC, ret. time=19.74 min, 92% purity.


Compound I7—4-(1-(2-(2,6-Difluorophenyl)acetyl)piperidin-4-yl)-1,2-dimethyl-6-oxo-N-((6-(trifluoromethyl)pyridin-2-yl)methyl)-1,6-dihydropyrimidine-5-carboxamide
I7.1: Ethyl 4-(1-(tert-butoxycarbonyl)piperidin-4-yl)-1,2-dimethyl-6-oxo-1,6-dihydropyrimidine-5-carboxylate

To a solution of A108.2 (200 mg, 0.55 mmol) in anhydrous ethylene glycol dimethyl ether (3.6 mL) was added NaH (66 mg, 60% suspension in mineral oil, 1.65 mmol) with stirring at room temperature. The resulting suspension was stirred at 45° C. for 15 min. To this mixture was added iodomethane (311 mg, 2.19 mmol). The resulting mixture was stirred at 45° C. for 1 h. After cooling down to 0° C. in an ice bath, the reaction mixture was quenched by addition of sat. NH4Cl solution. The mixture was then diluted with EtOAc, washed with water (3×) and brine, dried over magnesium sulfate, and concentrated in vacuo, affording the crude product of I7.1 (200 mg). 1H-NMR (400 MHz, CDCl3): δ 4.39 (q, 2H), 4.19 (br. s 2H), 3.51 (s, 3H), 2.75-2.66 (m 3H), 2.51 (s, 3H), 1.84 (m, 2H), 1.64 (m, 2H), 1.49 (s, 9H), 1.35 (t, 3H). MS (EI) for C19H29N3O5. found: 380.1 (MH+).


I7.2: 4-(1-(tert-Butoxycarbonyl)piperidin-4-yl)-1,2-dimethyl-6-oxo-1,6-dihydropyrimidine-5-carboxylic acid

To a mixture of the crude I7.1 (200 mg) in 1:1 MeOH/water (6 mL) was added NaOH (110 mg). The mixture was stirred at room temperature for 15 h, and then heated 50° C. for an additional 3 h. The mixture was concentrated in vacuo to remove MeOH, and then washed with hexanes (2×). The aq. layer was acidified to pH 2 with IN hydrochloric acid at 0° C., and then extracted with EtOAc (5×). The combined organic phase was washed with water and brine, dried over magnesium sulfate, and concentrated in vacuo to give the I7.2 as an off-white solid (135 mg). 1H-NMR (400 MHz, CDCl3): δ 4.35 (m, 1H), 4.21 (br.s, 2H), 3.63 (s, 3H), 2.86 (m, 2H), 2.64 (s, 3H), 1.80 (m, 2H), 1.80 (m, 2H), 1.48 (s, 9H).


I7.3: tert-Butyl 4-(1,2-dimethyl-6-oxo-5-((6-(trifluoromethyl)pyridin-2-yl)methylcarbamoyl)-1,6-dihydropyrimidin-4-yl)piperidine-1-carboxylate

To a mixture of I7.2 (135 mg, 0.38 mmol) and HATU (190 mg, 0.50 mmol) in CH2Cl2 (3.8 mL) was added DIEA (248 mg, 1.92 mmol). The resulting mixture was stirred at 30° C. for 20 min. To the above mixture was added (6-(trifluoromethyl)pyridin-2-yl)methanamine hydrochloride (114 mg, 0.54 mmol). The reaction mixture was stirred at 30° C. for 20 min. The resulting yellow solution was concentrated in vacuo to remove solvent. The residue was dissolved in EtOAc, washed sequentially with 0.2 N HCl aq. solution (2×), 0.2 N NaOH aq. solution (2×), and brine, dried over magnesium sulfate, and concentrated in vacuo to give a crude I7.3 (233 mg). 1H-NMR (400 MHz, CDCl3): δ 9.48 (t, 1H), 7.84 (t, 1H), 7.57 (d, 2H), 4.82 (d, 2H), 4.18 (br.s. 2H), 3.98 (m, 1H), 3.56 (s, 3H), 2.80 (m, 2H), 2.57 (s, 3H), 1.84 (m, 2H), 1.68 (m, 2H), 1.47 (s, 9H). The crude product was used directly for the next reaction without further purification.


I7.4: 1,2-Dimethyl-6-oxo-4-(piperidin-4-yl)-N-((6-(trifluoromethyl)pyridin-2-yl)methyl)-1,6-dihydropyrimidine-5-carboxamide hydrochloride

To a solution of I7.3 (233 mg) in MeOH (3 mL), was added 4 M HCl in dioxane (5 mL). The mixture was stirred at room temperature for 2.5 h. After removal of solvents in vacuo, the reaction mixture was dissolved in MeCN and concentrated in vacuo. The residue was triturated with tert-butyl methyl ether and the solvent was decanted. The residue was dried under high vacuum to give I7.4 (209 mg), which was used directly for the subsequent reaction. MS (EI) for C19H22F3N5O2. found: 401.0 (MH+).


Compound I7

To a mixture of 2-(2,6-difluorophenyl)acetic acid (98 mg, 0.57 mmol) and HATU (188 mg, 0.49 mmol) in CH2Cl2 (2 mL) was added DIEA (100 mg). The solution was stirred at room temperature for 20 min. The resulting solution was added into the solution of I7.4 obtained in the previous step (209 mg), DIEA (130 mg) and CH2Cl2 (1 mL). The resulting solution was stirred at room temperature for 15 min. After removal of solvent in vacuo, the reaction mixture was diluted with EtOAc, washed with water (2×) and brine, and concentrated in vacuo. The residue was purified on prep. HPLC to yield Compound I7 as a solid (136 mg). 1H-NMR (400 MHz, DMSO-d6): δ 911 (t, 1H), 8.12 (t, 1H), 7.88 (d, 1H), 7.78 (d, 1H), 7.34 (m, 1H), 7.05 (t, 2H), 4.58 (d, 2H), 4.41 (d, 1H), 4.11 (d, 1H), 3.75 (dd, 2H), 3.45 (s, 3H), 3.22 (m, 1H), 3.04 (t, 1H), 2.91 (m, 1H), 2.52 (s, 3H), 1.79 (m, 1H), 1.67-1.60 (m, 3H). Analytical HPLC, ret. time=15.18 min, 98% purity. MS (EI) for C27H26F5N5O3. found: 564.0 (MH+).


Compound I8—4-(1-(2-(2,6-Difluorophenyl)acetyl)piperidin-4-yl)-1-ethyl-2-methyl-6-oxo-N-((6-(trifluoromethyl)pyridin-2-yl)methyl)-1,6-dihydropyrimidine-5-carboxamide

Compound I8 was synthesized with the same method utilized for Compound I7. Analytical HPLC, ret. time=16.228 min. MS (EI) for C28H28F5N5O3. found: 578.0 (MH+).


Compound J1—(E)-2-(2,6-Difluorophenyl)-1-(4-(5-(3-(3,5-dimethylphenyl)prop-1-enyl)-2-methylpyrimidin-4-yl)piperidin-1-yl)ethanone
J1.1: 3,5-Dimethylbenzylphosphonium iodide

A mixture of 1-(2-iodoethyl)-3,5-dimethylbenzene (300 mg, 1.15 mmol), triphenylphosphine (452 mg, 1.73 mmol) and MeCN (3 mL) was stirred for 18 h at 85° C. The resulting mixture was concentrated and purified by silica gel column chromatography (CH2Cl2/MeOH=15/1→12/1) to give J1.1 (610 mg, quant) as a white solid. MS (EI) for C28H28P+. found 395.0 (M+).


Compound J1

To a stirred solution of J1.1 (248 mg, 0.474 mmol) in THF (3 mL) at 0° C. was added nBuLi (0.34 mmol, 2.5M in Hexane, 0.853 mmol). After stirring for 30 min at 0° C., B30.1 (85.0 mg, 0.237 mmol) in THF (1 mL) was added at 0° C. After stirring for 80 min at room temperature, aq. sat. NH4Cl (3 mL) was added and the resulting solution was extracted with EtOAc (3×3 mL). The combined organic layers were concentrated and purified by silica gel column chromatography (hexane/EtOAc=2:1→1:1) to give J1.2 as a white solid. 1H-NMR (400 MHz, CDCl3, geometric mixture of E/Z=1.8:1, data for E reported): δ 8.54 (s, 1H), 7.23 (m, 1H), 6.91 (t, 2H), 6.90 (s, 1H), 6.86 (s, 2H), 6.52 (d, J=15.6 Hz, 1H), 6.26 (dt, J=15.6, 6.4 Hz, 1H), 4.73 (d, 1H), 4.15 (d, 1H), 3.77 (s, 2H), 3.53 (d, J=6.4 Hz, 2H), 3.25 (td, 1H), 3.10 (tt, 1H), 2.74 (m, 1H), 2.67 (s, 3H), 2.31 (s, 6H), 2.06 (m, 1H), 1.81 (m, 3H). MS (EI) for C29H31F2N3O. found 476.1 (MH+). Analytical HPLC, ret. time=21.196 min (E) and 21.468 min (Z), 99% purity.


Compound J2—(Z)-2-(2,6-Difluorophenyl)-1-(4-(5-(3-(3,5-dimethylphenyl)prop-1-enyl)-2-methylpyrimidin-4-yl)piperidin-1-yl)ethanone

Compound J2 was an additional isomer recovered from the reaction that generated Compound J1. 1H-NMR (400 MHz, CDCl3, geometric mixture of Z/E=9:1, data for Z selected): δ 8.42 (s, 1H), 7.23 (m, 1H), 6.90 (t, 2H), 6.85 (s, 1H), 6.75 (s, 2H), 6.50 (d, J=11.2 Hz, 1H), 6.13 (dt, J=11.2, 7.6 Hz, 1H), 4.73 (d, 1H), 4.12 (d, 1H), 3.76 (s, 2H), 3.36 (d, J=7.6 Hz, 2H), 3.20 (td, 1H), 3.07 (tt, 1H), 2.71 (s, 3H), 2.70 (m, 1H), 2.28 (s, 6H), 2.05 (qd, 1H), 1.81 (m, 3H). MS (EI) for C29H31F2N3O. found 476.1 (MH+). Analytical HPLC, ret. time=21.248 min (E) and 21.540 min (Z), 90% purity.


Compound J3—2-(2,6-Difluorophenyl)-1-(4-(5-(3-(3,5-dimethylphenyl)propyl)-2-methylpyrimidin-4-yl)piperidin-1-yl)ethanone

A mixture of olefin Compounds J1 and J2 (25.0 mg, 0.0526 mmol), Pd/C (28 mg, 10 wt. %, 0.026 mmol) and MeOH (2 mL) was stirred for 1.5 h at room temperature under a balloon of hydrogen. The mixture was filtered through Celite and the filtrate was concentrated. The residue was dissolved in CH2Cl2 (1 mL) and the resulting solution was filtered and concentrated to give J3 (18.0 mg, 72%) as a pale yellow solid after lyophilization. 1H-NMR (400 MHz, CDCl3): δ 8.34 (s, 1H), 7.23 (m, 1H), 6.91 (t, 2H), 6.88 (s, 1H), 6.82 (s, 2H), 4.72 (d, 1H), 4.09 (d, 1H), 3.75 (s, 2H), 3.10 (td, 1H), 2.83 (tt, 1H), 2.65 (s, 3H), 2.60 (m, 5H), 2.30 (s, 6H), 2.03 (qd, 1H), 1.87 (m, 3H), 1.65 (m, 2H). MS (EI) for C29H33F2N3O. found 478.1 (MH+). Analytical HPLC, ret. time=19.088 min, 97% purity.


Compound K1—N-((4-(1-(2-(2,6-Difluorophenyl)acetyl)piperidin-4-yl)-2-methylpyrimidin-5-yl)methyl)-3,5-dimethylbenzamide
K1.1: 4-(1-(2-(2,6-Difluorophenyl)acetyl)piperidin-4-yl)-2-methylpyrimidine-5-carboxamide

A mixture of A1.4 (300 mg, 0.744 mmol) and NH4OH (4 mL) was stirred for 21 h at 80° C. The resulting solution was cooled to room temperature and extracted with EtOAc (5 mL, 3×3 mL). The combined organic layers were concentrated under vacuum to give K1.1 (83 mg, 30%) as a white foam. MS (EI) for C19H20F2N4O2. found 375.0 (MH+).


K1.2: 4-(1-(2-(2,6-Difluorophenyl)acetyl)piperidin-4-yl)-2-methylpyrimidine-5-carbonitrile

To a stirred solution of K1.1 (75.0 mg, 0.200 mmol), Et3N (0.14 mL, 1.0 mmol) and THF (2 mL) at 0° C. was added trifluoroacetic anhydride (210 mg, 1.00 mmol). After stirring for 10 min at room temperature, the resulting mixture was concentrated, dissolved in water (3 mL), and extracted with EtOAc (2×2 mL). The combined organic layers were concentrated and purified by silica gel column chromatography (hexane/EtOAc=3:2) to give K1.2 (53.0 mg, 74%) as a white solid. MS (EI) for C19H18F2N4O. found 357.0 (MH+).


K1.3: 1-(4-(5-(Aminomethyl)-2-methylpyrimidin-4-yl)piperidin-1-yl)-2-(2,6-difluorophenyl)ethanone

A mixture of K1.2 (53.0 mg, 0.149 mmol), Pd/C (158 mg, 10 wt. %, 0.149 mmol) and NH3 in MeOH (4 mL, 2N) was stirred for 1.5 h at room temperature under a balloon of hydrogen. The mixture was filtered through Celite and the filtrate was concentrated. The residue was dissolved in EtOAc (2.7 mL) and MeOH (0.3 mL), and the resulting solution was filtered and concentrated to give K1.3 (46 mg, 86%) as a white solid. MS (EI) for C19H22F2N4O. found 361.1 (MH+).


Compound K1

To a stirred solution of K1.3 (12.0 mg, 0.0333 mmol), 3,5-dimethylbenzoic acid (7.3 mg, 0.049 mmol), HATU (23.2 mg, 0.0609 mmol) and DMF (0.5 mL) was added DIEA (20 μL, 0.12 mmol). After stirring for 30 min at room temperature, aq. sat. NaHCO3 (2 mL) and water (1 mL) were added and the resulting solution was extracted with EtOAc (2×2 mL). The combined organic layers were concentrated and purified by silica gel column chromatography (hexane/EtOAc=1:5→1:10) to give Compound K1 (13 mg, 79%) as a white solid after lyophilization. 1H-NMR (400 MHz, CDCl3): δ 8.51 (s, 1H), 7.34 (s, 2H), 7.22 (m, 1H), 7.16 (s, 1H), 6.90 (t, 2H), 6.27 (t, 1H), 4.72 (m, 1H), 4.69 (d, 2H), 4.10 (d, 1H), 3.75 (s, 2H), 3.25 (m, 2H), 2.71 (m, 1H), 2.70 (s, 3H), 2.35 (s, 6H), 2.05 (qd, 1H), 1.91 (qd, 1H), 1.78 (m, 1H), 1.69 (m, 1H). MS (EI) for C28H30F2N4O2. found 493.1 (MH+). Analytical HPLC, ret. time=14.908 min, 95% purity.


Compound L1—N-(3,4-Dichlorobenzyl)-4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-yl)pyrimidine-5-carbothioamide
L1.1: tert-Butyl 4-(5-(3,4-dichlorobenzylcarbamoyl)pyrimidin-4-yl)piperidine-1-carboxylate

L1.1 was synthesized from A99.3 in an identical manner to that from which A99.4 was synthesized from A99.3.


L1.2: N-(3,4-Dichlorobenzyl)-4-(piperidin-4-yl)pyrimidine-5-carbothioamide

To a solution of L1.1 (525 mg, 1.1 mmol) in 1,4-dioxane (4 mL) was added Lawesson's reagent (547 mg, 1.35 mmol). The resulting mixture was stirred at 100° C. for 5 h, and then cooled to room temperature. To this mixture was added 4 N HCl/dioxane (2 mL) and MeOH (10 mL). The stirring was continued for 2 h. Water (25 mL) was added. The aq. phase was washed with EtOAc, basified with 20% NaOH solution, and extracted with EtOAc. The organic phase was dried over sodium sulfate, filtered, and concentrated. The crude L1.2 was used as is in the next step.


Compound L1

L1.2 (131 mg, 0.34 mmol) was mixed with 2,6-difluorophenylacetic acid (70 mg, 0.41 mmol), HOBt (69 mg, 0.51 mmol) and DIEA (258 mg, 2 mmol) in THF (5 mL). To this solution was added EDC (98 mg, 0.51 mmol). The resulting reaction mixture was stirred at room temperature for 5 h then diluted with aq. sat. NaHCO3. The resulting mixture was extracted with EtOAc and the organic mixture was dried over sodium sulfate, filtered, and concentrated. The crude product was purified by prep HPLC to give Compound L. 1H-NMR (400 MHz, DMSO-d6): δ 11.23 (br s, 1H), 9.13 (s, 1H), 8.61 (s, 1H), 7.70 (m, 2H), 7.45 (m, 1H), 7.35 (m, 1H), 7.07 (m, 2H), 4.98 (m, 2H), 4.45 (d, 1H), 4.15 (d, 1H), 3.83 (d, 1H), 3.75 (d, 1H), 3.05 (m, 2H), 2.46 (m, 1H), 1.70 (m, 4H). MS (EI) for C25H22Cl2F2N4OS. found: 535.1 (MH+). Analytical HPLC, ret. time=25.0 min, 93% purity.


Compound M1—2-(3-Chlorophenoxy)-1-(4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-yl)-2-methylpyrimidin-5-yl)ethanone
M1.1: 2-Bromo-1-(4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-yl)-2-methylpyrimidin-5-yl)ethanone

To a solution of B3.1 (100 mg, 0.26 mmol) in AcOH (1 mL) was added 0.3 mL of 33% HBr/AcOH, followed by the addition of Br2 (0.5 mL, 0.5 M in CHCl3). The mixture was stirred at room temperature for 30 min. Aq. sat. NaHCO3 was added to quench the reaction. The mixture was extracted with CH2Cl2 and the organic phase was dried over sodium sulfate, filtered, and concentrated. Crude M1.1 was used as is in the next step.


Compound M1

M1.1 (0.2 mmol) was mixed with 3-chlorophenol (51 mg, 0.4 mmol) and K2CO3 (60 mg, 0.43 mmol) in acetone (3 mL). The resulting mixture was stirred at 50° C. for 12 h and then water was added. The mixture was extracted with EtOAc and the organic phase was dried over sodium sulfate, filtered, and concentrated. The crude product was purified by flash column chromatography to give Compound M1. 1H-NMR (400 MHz, DMSO-d6): δ 9.18 (s, 1H), 7.32 (m, 2H), 7.11 (m, 5H), 5.55 (s, 2H), 4.46 (d, 1H), 4.18 (d, 1H), 3.82 (d, 1H), 3.73 (d, 1H), 3.45 (m, 1H), 3.18 (m, 1H), 2.68 (s, 3H), 2.62 (m, 1H), 1.70 (m, 4H). MS (EI) for C26H24ClF2N3O3. found: 500.0 (MH+). Analytical HPLC, ret. time=3.48 min, 90% purity.


Common Intermediate CI1: Ethyl 4-(1-(tert-butoxycarbonyl)piperidin-4-yl)-2-methylpyrimidine-5-carboxylate
CI1.1: tert-Butyl 4-(3-(dimethylamino)-2-(ethoxycarbonyl)acryloyl)piperidine-1-carboxylate

tert-Butyl 4-(3-ethoxy-3-oxopropanoyl)piperidine-1-carboxylate (40 g, 133 mmol) and dimethylformamide dimethylacetal (DMF-DMA) (19 g, 160 mmol) were dissolved in toluene (40 mL). The solution was stirred under reflux for 5 h and cooled to room temperature. The solution was concentrated and used as is in the next reaction.


Common Intermediate CI1

To a suspension of acetamidine hydrochloride (15.1 g, 160 mmol) in EtOH (100 mL) was added EtONa (11 g, 160 mmol). The resulting mixture was stirred for 15 min at room temperature. Crude enamine intermediate CI1.1 was dissolved in EtOH (100 mL) and added to the acetamidine hydrochloride mixture. The mixture was heated to 70° C. with stirring for 2 h. The solvent was removed under reduced pressure. The residue was stirred in EtOAc (500 mL) and filtered. Concentration of the filtrate gave the crude product, which was further purified by flash column chromatography.


Common Intermediate CI2: Methyl/Ethyl 4-(1-(tert-butoxycarbonyl)piperidin-4-yl)-2,6-dimethylpyrimidine-5-carboxylate
CI2.1: tert-Butyl 4-(2-(ethoxy(or methoxy)carbonyl)-3-methoxybut-2-enoyl)piperidine-1-carboxylate

tert-Butyl-4-(3-ethoxy-3-oxopropanoyl)piperidine-1-carboxylate (6.0 g, 20.0 mmol), AcOH (57 μL, 1.0 mmol), trimethyl orthoacetate, (3.0 mL), pyridine (80 μL, 1.0 mmol), and toluene (100 mL) were charged into a 250 mL flask equipped with fractional distillation apparatus. The reaction mixture was stirred at 130° C. (bath temperature) and the solvent distilled at about the boiling point of the MeOH/toluene azeotrope for 48 h. The reaction mixture was cooled to room temperature and concentrated in vacuo to give CI2.1 which was used directly in the next step.


Common Intermediate CI2

To a stirred suspension of acetamidine HCl (2.84 g, 30.0 mmol) in EtOH (60 mL) was added NaOEt (2.05 g, 30.0 mmol) and the reaction mixture was stirred at room temperature for 30 min. To this suspension was added the crude intermediate CI2.1 in EtOH (20 mL) slowly at room temperature and the resulting mixture was stirred at reflux for 5 h.


The reaction mixture was cooled down to room temperature, concentrated under reduced pressure, and the residue was partitioned between water and CH2Cl2. The separated aq. layer was extracted with CH2Cl2 (×2) and the combined organic layers were dried over sodium sulfate, concentrated in vacuo, and purified by flash chromatography to give a mixture of the methyl and ethyl esters of CI2 (2.51 g, ca. 35%).


General Procedure 1: Ester Hydrolysis



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To a stirred solution of ester 1 (5.0 mmol) in MeOH (30 mL) was added aq. IN NaOH (20 mL) and the reaction mixture was stirred at room temperature overnight. MeOH was removed in vacuo and the residual aq. layer was acidified with IN HCl to pH 4-5, and extracted with CH2Cl2 (×5). The combined organic layers were dried over sodium sulfate and concentrated in vacuo to give acid 2 (˜97% yield). Alternatively, LiOH can be substituted for NaOH using THF as the solvent instead of MeOH. Mild heating can also be used to facilitate the ester hydrolysis.


General Procedure 2: Boc Deprotection



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To a solution of 3 (13.7 mmol) in an appropriate solvent such as EtOH, MeOH, DCE or dioxane (20 mL) was added 4N HCl in dioxane (12 mL). The resulting solution was stirred for 12 h at room temperature. Ether (100 mL) was added with stirring. The resulting solid was filtered and dried under vacuum. The crude solid HCl salt 4 was used in the next step without further purification. If no filterable solid formed, the reaction mixture was concentrated in vacuo and the residue was used for the next step without further purification. Alternatively, trifluoroacetic acid can be used instead of 4N HCl in dioxane. The reaction mixture is concentrated in vacuo once Boc deprotection is complete and the crude TFA salt is used for the next step without further purification.


General Procedure 3: Amide Linker Coupling



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Carboxylic acid 2 (0.39 mmol) was mixed with amine 5 (0.45 mmol) and DIEA (0.5 mL) in THF (3 mL). To this solution was added 2-(1H-7-azabenzotriazol-1-yl)-1,1,3,3-tetramethyluronoium hexafluorphosphate (HATU) (0.58 mmol). The resulting reaction mixture was stirred at room temperature for 2 h then diluted with aq. sat. NaHCO3. The mixture was extracted with CH2Cl2, dried over sodium sulfate, filtered, and concentrated. The crude mixture was purified by flash chromatography or preparative HPLC to give amide 6.


General Procedure 4: Phenylacetamide Formation



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A mixture of amine 4, 2,6-difluorophenylacetic acid (8.31 mmol), Et3N (34.6 mmol) and DMF (20 mL) was treated with HATU (8.31 mmol) and the resulting mixture was stirred at room temperature for 1 h. The reaction mixture was diluted with EtOAc, washed with aq. sodium bicarbonate, brine, dried over sodium sulfate, concentrated in vacuo and the residue purified by flash chromatography to afford phenylacetamide 7 (˜81% yield).


General Procedure 5: Phenylurea Formation



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Amine 4 (0.2 mmol), 2,6-difluorophenyl isocyanate (0.4 mmol) and Et3N (1 mmol) were mixed in an appropriate solvent such as CH2Cl2 or acetone (2 mL). The solution was stirred at room temperature for 30 min and diluted with EtOAc (25 mL). The organic phase was washed with NaHCO3, brine, dried over sodium sulfate and concentrated. The crude mixture was purified by flash chromatography or prep HPLC to give phenylurea 8.


General Procedure 6: Oxidation of Methylthio Compounds to Methylsulfonyl Compounds



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To a 0° C. solution of 9 (0.088 mmol) in CH2Cl2 (3 mL) was added meta-chloroperoxybenzoic acid (mCPBA) (55 mg, 0.22 mmol, ˜70%). The resulting mixture was stirred for 2 h while slowly warming to room temperature. Aq. sat. NaHCO3 was added. The mixture was extracted with CH2Cl2 and the organic phase was washed with aq. Na2SO3 solution, dried over sodium sulfate, filtered, and concentrated. The resulting product can be used crude or purified by flash column chromatography.


General Procedure 7: Conversion of 2-(Methylsulfonyl)Pyrimidines to 2-Aminopyrimidines



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Compound 10 (0.17 mmol) was dissolved in dioxane (3.0 mL). To this mixture was added aqueous ammonium hydroxide (3.0 mL) and the resulting mixture was stirred at room temperature. Once the reaction was complete as monitored by LC-MS, the reaction mixture was diluted with EtOAc and washed with aq. NaHCO3 (2×), water (1×), dried (Na2SO4) and concentrated in vacuo. The resulting crude residue was purified by preparative HPLC to give compound 11 (32%).


Compound A116: 4-{1-[(2,6-Difluorophenyl)(difluoro)acetyl]piperidin-4-yl}-N-[(3,5-dimethylphenyl)methyl]-2-methylpyrimidine-5-carboxamide
A116.1: 4-(1-(tert-Butoxycarbonyl)piperidin-4-yl)-2-methylpyrimidine-5-carboxylic acid

Intermediate A116.1 was made from the ester hydrolysis of Common Intermediate CI1 using General Procedure 1.


A116.2: tert-Butyl 4-(5-(3,5-dimethylbenzylcarbamoyl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate

Intermediate A116.2 was made from coupling intermediate A116.1 with 3,5-dimethylbenzylamine using General Procedure 3.


A116.3: N-(3,5-Dimethylbenzyl)-2-methyl-4-(piperidin-4-yl)pyrimidine-5-carboxamide hydrochloride salt

Intermediate A116.3 was made from the Boc deprotection of intermediate A116.2 using General Procedure 2.


A116.4: 2-(2,6-Difluorophenyl)-2,2-difluoroacetyl chloride

To a solution of 2-(2,6-difluorophenyl)-2,2-difluoroacetic acid (23 mg, 0.13 mmol) and oxalyl chloride (17 mg, 0.13 mmol) in DCM (1 mL) was added 1 drop of DMF with stirring at room temperature for 10 min. The resulting crude reaction solution was used as is in the next reaction.


Compound A116

Intermediate A116.3 (50 mg, 0.12 mmol) was added to the above solution of intermediate A116.4, followed by DIEA (63 mg, 0.49 mmol). The resulting mixture was stirred at RT for 30 min, and then quenched with ice water. The crude mixture was partitioned between EtOAc and saturated aqueous KHCO3. The organic phase was washed with brine, dried over MgSO4, and concentrated. The crude product was purified on prep HPLC to give Compound A116 as a white solid (11 mg). 1H-NMR (400 MHz, CDCl3): δ 8.57 (s, 1H), 7.45 (m, 1H), 6.98 (t, 2H), 6.95 (s, 3H), 6.11 (t, 1H), 4.66 (d, 1H), 4.55 (m, 2H), 4.25 (d, 1H), 3.46 (m, 1H), 3.12 (t, 1H), 2.82 (t, 1H), 2.71 (s, 3H), 2.31 (s, 6H), 2.00-1.80 (m, 4H). MS (EI) for C28H28F4N4O2. found: 529.2 (MH+). Analytical HPLC, ret. time=15.20 min, 98% purity.


Compound A117: 4-{1-[Difluoro(phenyl)acetyl]piperidin-4-yl}-N-[(3,5-dimethylphenyl)methyl]-2-methylpyrimidine-5-carboxamide

Compound A117 was made in a manner similar to Compound A116: 1H-NMR (400 MHz, CDCl3): δ 8.55 (s, 1H), 7.58-7.56 (m, 2H), 7.49-7.47 (m, 3H), 6.94-6.93 (m, 3H), 6.13 (t, 1H), 4.71 (d, 1H), 4.52 (d, 2H), 4.01 (d, 1H), 3.39 (m, 1H), 2.92 (m, 1H), 2.76 (t, 1H), 2.69 (s, 3H), 2.29 (s, 6H), 1.96-1.82 (m, 2H), 1.71-1.61 (m, 2H). MS (EI) for C28H30F2N4O2. found: 393.2 (MH+). Analytical HPLC, ret. time=14.96 min, 99% purity.


Compound A118: 4-{1-[Difluoro(2-fluorophenyl)acetyl]piperidin-4-yl}-N-[(3,5-dimethylphenyl)methyl]-2-methylpyrimidine-5-carboxamide

Compound A118 was made in a manner similar to Compound A116: 1H-NMR (400 MHz, CDCl3): δ 8.56 (s, 1H), 7.58 (t, 1H), 7.49 (dd, 1H), 7.25 (m, 1H), 7.16 (t, 1H), 6.95 (s, 3H), 6.12 (t, 1H), 4.67 (d, 1H), 4.54 (m, 2H), 4.25 (d, 1H), 3.44 (m, 1H), 3.09 (m, 1H), 2.80 (t, 1H), 2.71 (s, 3H), 2.31 (s, 6H), 2.00-1.77 (m, 4H). MS (EI) for C28H29F3N4O2. found: 511.2 (MH+). Analytical HPLC, ret. time=15.10 min, 99% purity.


Compound A119: 2-Chlorophenyl 4-[5-({[(3,5-dimethylphenyl)methyl]amino}carbonyl)-2-methylpyrimidin-4-yl]piperidine-1-carboxylate

To a mixture of intermediate A116.3 (50 mg, 0.12 mmol), diisopropylethylamine (DIEA) (63 mg, 0.49 mmol) and anhydrous THF (1.2 mL) was added 2-chlorophenyl chloroformate (26 mg, 0.13 mmol) at RT and the mixture was stirred at RT for 16 h. The resulting mixture was diluted with EtOAc and the mixture was partitioned between EtOAc and saturated aqueous sodium carbonate solution. The organic phase was separated, washed with brine, dried over MgSO4, filtered, and concentrated in vacuo. The residue was purified on prep. HPLC to afford Compound A119 as a while solid (29 mg). 1H-NMR (400 MHz, CDCl3): δ 8.58 (s, 1H), 7.43 (d, 1H), 7.30-7.23 (m, 2H), 7.18-7.14 (t, 1H), 6.97 (s, 3H), 6.16 (t, 1H), 4.56 (m, 2H), 4.48 (d, 1H), 4.33 (d, 1H), 3.4 (m, 1H), 3.11 (t, 1H), 2.94 (t, 1H), 2.72 (s, 3H), 2.33 (s, 6H), 2.10-1.98 (m, 2H), 1.85 (t, 2H). MS (EI) for C27H29ClN4O3. found: 493.1 (MH+). Analytical HPLC, ret. time=15.77 min, 99% purity.


Compound A120: 2,6-Difluorophenyl 4-[5-({[(3,5-dimethylphenyl)methyl]amino}carbonyl)-2-methylpyrimidin-4-yl]piperidine-1-carboxylate

Compound A120 was made in a manner similar to Compound A119: 1H-NMR (400 MHz, CDCl3): δ 8.59 (s, 1H), 7.14 (m, 1H), 7.00-6.95 (m, 5H), 6.10 (t, 1H), 4.57 (m, 2H), 4.45 (d, 1H), 4.33 (d, 1H), 3.42 (m, 1H), 3.12 (t, 1H), 2.96 (t, 1H), 2.73 (s, 3H), 2.33 (s, 6H), 2.10-2.00 (m, 2H), 1.86 (t, 2H). MS (EI) for C27H28F2N4O3. found: 495.3 (MH+). Analytical HPLC, ret. time=15.88 min, 99% purity.


Compound A121: 4-{1-[(2,6-Difluorophenyl)acetyl]piperidin-4-yl}-2,6-dimethyl-N-{[2-(trifluoromethyl)pyrimidin-4-yl]methyl}pyrimidine-5-carboxamide
A121.1: 4-(1-(tert-Butoxycarbonyl)piperidin-4-yl)-2,6-dimethylpyrimidine-5-carboxylic acid

Intermediate A121.1 was made from the ester hydrolysis of Common Intermediate CI2 using General Procedure 1.


A121.2: tert-Butyl 4-(2,6-dimethyl-5-((2-(trifluoromethyl)pyrimidin-4-yl)methylcarbamoyl)pyrimidin-4-yl)piperidine-1-carboxylate

Intermediate A121.2 was made from coupling intermediate A121.1 with (2-(trifluoromethyl)pyrimidin-4-yl)methanamine using General Procedure 3.


A121.3: 2,4-Dimethyl-6-(piperidin-4-yl)-N-((2-(trifluoromethyl)pyrimidin-4-yl)methyl)pyrimidine-5-carboxamide hydrochloride salt

Intermediate A121.3 was made from the Boc deprotection of intermediate A121.2 using General Procedure 2.


Compound A121

Compound A121 was made from intermediate A121.3 and 2,6-difluorophenylacetic acid using General Procedure 4. 1H-NMR (400 MHz, CDCl3): δ 8.92 (d, 1H), 7.59 (d, 1H), 7.22 (m, 1H), 6.89 (t, 2H), 6.86 (t, 1H), 4.92 (d, 1H), 4.86 (d, 1H), 4.68 (d, 1H), 4.07 (d, 1H), 3.73 (d, 2H), 3.10 (m, 1H), 2.91 (tt, 1H), 2.69 (s, 3H), 2.58 (td, 1H), 2.50 (s, 3H), 2.04 (qd, 1H), 1.93 (qd, 1H), 1.81 (m, 2H). MS (EI) for C26H25F5N6O2. found 549.2 (MH+). Analytical HPLC, ret. time=14.252 min, 96% purity.


Compound A122: 4-(1-{[(2,6-difluorophenyl)amino]carbonyl}piperidin-4-yl)-2,6-dimethyl-N-{[2-(trifluoromethyl)pyrimidin-4-yl]methyl}pyrimidine-5-carboxamide

Compound A122 was made from intermediate A121.3 and 2,6-difluorophenyl isocyanate using General Procedure 5. 1H-NMR (400 MHz, CDCl3): δ 8.93 (d, 1H), 7.59 (d, 1H), 7.11 (m, 1H), 6.93 (t, 2H), 6.89 (t, 1H), 5.88 (s, 1H), 4.89 (d, 2H), 4.18 (d, 2H), 2.90 (m, 3H), 2.69 (s, 3H), 2.51 (s, 3H), 2.07 (qd, 2H), 1.82 (m, 2H). MS (EI) for C25H24F5N7O2. found 550.2 (MH+). Analytical HPLC, ret. time=12.496 min, 97% purity.


Compound A123: 2,6-Difluorophenyl 4-{2,6-dimethyl-5-[({[2-(trifluoromethyl)pyrimidin-4-yl]methyl}amino)carbonyl]pyrimidin-4-yl}piperidine-1-carboxylate

Compound A123 was made from intermediate A121.3 and 2,6-difluorophenyl chloroformate (prepared using a general method according to the literature procedure as described in J. Med. Chem. 2006, 49, 4981) using a method analogous to that used to convert intermediate A116.3 to Compound A119. 1H-NMR (400 MHz, CDCl3): δ 8.94 (d, 1H), 7.60 (d, 1H), 7.14 (m, 1H), 7.00-6.95 (m, 2H), 6.84 (t, 1H), 4.92 (dd, 2H), 4.43 (d, 1H), 4.31 (d, 1H), 3.03 (t, 1H), 2.92-2.84 (m, 2H), 2.71 (s, 3H), 2.51 (s, 3H), 2.13-2.06 (m, 2H), 1.84-1.81 (m, 2H). 1MS (EI) for C25H23F5N6O3. found: 551.2 (MH+). Analytical HPLC, ret. time=13.21 min, 99% purity.


Compound A124: 2-Fluorophenyl 4-{2,6-dimethyl-5-[({[2-(trifluoromethyl)pyrimidin-4-yl]methyl}amino)carbonyl]pyrimidin-4-yl}piperidine-1-carboxylate

Compound A124 was made in a manner similar to Compound A123: 1H-NMR (400 MHz, CDCl3): δ 8.94 (d, 1H), 7.60 (d, 1H), 7.22-7.10 (m, 4H), 6.84 (t, 1H), 4.91 (t, 2H), 4.42 (d, 1H), 4.33 (d, 1H), 2.99 (t, 1H), 2.92-2.81 (m, 2H), 2.71 (s, 3H), 2.51 (s, 3H), 2.08 (m, 2H), 1.81 (d, 2H). MS (EI) for C25H24F4N6O3. found: 533.2 (MH+). Analytical HPLC, ret. time=12.66 min, 99% purity.


Compound A125: Phenyl 4-{2,6-dimethyl-5-[({[2-(trifluoromethyl)pyrimidin-4-yl]methyl}amino)carbonyl]pyrimidin-4-yl}piperidine-1-carboxylate

Compound A125 was made in a manner similar to Compound A123: 1H-NMR (400 MHz, CDCl3): δ 8.34 (d, 1H), 7.61 (d, 1H), 7.37 (t, 2H), 7.20 (t, 1H), 7.12 (d, 2H), 4.91 (m, 2H), 4.42-4.34 (m, 2H), 2.96-2.80 (m, 3H), 2.71 (s, 3H), 2.52 (s, 3H), 2.10-2.03 (m, 2H), 1.81 (d, 2H). MS (EI) for C25H25F3N6O3. found: 515.2 (MH+). Analytical HPLC, ret. time=12.34 min, 99% purity.


Compound A126: 2-Fluorophenyl 4-{2-amino-6-methyl-5-[({[2-(trifluoromethyl)pyrimidin-4-yl]methyl}amino)carbonyl]pyrimidin-4-yl}piperidine-1-carboxylate

Compound A126 was made in five steps from intermediate C48.2 in the same manner that Compound A123 was made in three steps from intermediate A121.1. 2-Fluorophenyl chloroformate was substituted for 2,6-difluorophenyl chloroformate in the third step and the additional steps of methyl sulfide oxidation (as outlined in General Procedure 6) and conversion of the resulting 2-(methylsulfonyl)pyrimidine to the corresponding 2-aminopyrimidine (as outlined in General Procedure 7) were added to the reaction sequence. 1H-NMR (400 MHz, CDCl3): δ 8.92 (d, 1H), 7.59 (d, 1H), 7.15 (m, 4H), 8.86 (t, 1H), 5.13 (s, 2H), 4.86 (dd, 2H), 4.39 (d, 1H), 4.29 (d, 1H), 2.97 (t, 1H), 2.82 (m, 2H), 2.38 (s, 3H), 1.98 (m, 2H), 1.80 (m, 2H). MS (EI) for C24H23F4N7O3. found 534.2 (MH+). Analytical HPLC, ret. time=10.616 min, 99% purity.


Compound B36: N-(2,6-Difluorophenyl)-4-{2-methyl-5-[(1E)-N-{[2-(trifluoromethyl)pyrimidin-4-yl]oxy}ethanimidoyl]pyrimidin-4-yl}piperidine-1-carboxamide
B36.1: tert-Butyl 4-(5-acetyl-2-methylpyrimidin-4-yl)piperidine-1-carboxylate

To a stirred mixture of intermediate acid A116.1 (3.07 g, 9.55 mmol), N,O-dimethylhydroxylamine hydrogenchloride (1.12 g, 11.5 mmol), and Et3N (5.32 mL, 38.2 mmol) in dimethylacetamide (DMA) (30 mL) was added HATU (4.36 g, 11.5 mmol) and the reaction mixture was stirred at room temperature for 1 h. The reaction mixture was diluted with EtOAc, washed with aq. sodium bicarbonate, brine, dried over sodium sulfate and concentrated in vacuo to give the corresponding Weinreb amide, which was directly used for the next step. The crude Weinreb amide was dissolved in THF (30 mL) and the resulting solution was treated with MeMgBr (27.3 mL, 1.4 M in THF/toluene, 38.2 mmol) at room temperature. After stirring for 2 h, the reaction mixture was cooled to 0° C., quenched with aq. NH4Cl and extracted with EtOAc (×2). The combined organic layers were dried over sodium sulfate, concentrated in vacuo, and the residue was purified by flash chromatography to give ketone intermediate B36.1 (2.76 g, 90% in 2 steps).


B36.2: tert-Butyl 4-(5-(1-(hydroxyimino)ethyl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate

To a stirred solution of B36.1 (53.0 mg, 0.166 mmol) in ethanol (1 mL) were added hydroxylamine.HCl (34.6 mg, 0.498 mmol) and a catalytic amount of cone HCl. After stirring for 23 h at room temperature, aqueous saturated NaHCO3 (2 mL) was added and the resulting solution was extracted with EtOAc (3×2 mL). The combined organic layers were concentrated and purified by silica gel column chromatography (Hexane/EtOAc=3:2→2:3) to give B36.2 (29 mg, 52%) as a white foam. MS (EI) for C17H26N4O3. found 335.2 (MH+).


B36.3: tert-Butyl 4-(2-methyl-5-(1-(2-(trifluoromethyl)pyrimidin-4-yloxyimino)ethyl)pyrimidin-4-yl)piperidine-1-carboxylate

To a stirred solution of B36.2 (36.6 mg, 0.109 mmol) and 4-chloro-2-(trifluoromethyl)pyrimidine (59.7 mg, 0.327 mmol) in DMA (0.6 mL) at room temperature was added potassium carbonate (60.3 mg, 0.436 mmol). After stirring for 5 h, the mixture was filtered through Celite. The filtrate was concentrated and purified by silica gel column chromatography (Hexane/EtOAc=3:2→4:3) to give B36.3 (50 mg, 95%) as a white foam. MS (EI) for C22H27F3N6O3. found 481.2 (MH+).


B36.4: 1-(2-Methyl-4-(piperidin-4-yl)pyrimidin-5-yl)ethanone O-2-(trifluoromethyl)pyrimidin-4-yl oxime hydrochloride salt

Intermediate B36.4 was made from the Boc deprotection of intermediate B36.3 using General Procedure 2.


Compound B36

Compound B36 was made from intermediate B36.4 and 2,6-difluorophenyl isocyanate using General Procedure 5. 1H-NMR (400 MHz, CDCl3): δ 8.79 (d, 1H), 8.57 (s, 1H), 7.41 (d, 1H), 7.12 (m, 1H), 6.94 (t, 2H), 5.90 (s, 1H), 4.26 (d, 2H), 3.13 (tt, 1H), 3.01 (td, 2H), 2.78 (s, 3H), 2.59 (s, 3H), 2.15 (qd, 2H), 1.85 (m, 2H). MS (EI) for C24H22F5N7O2. found 536.2 (MH+). Analytical HPLC, ret. time=17.128 min, 99% purity.


Compound B37: N-(2,6-Difluorophenyl)-4-{2-methyl-5-[(1E)-N-{[2-(trifluoromethyl)pyridin-4-yl]oxy}ethanimidoyl]pyrimidin-4-yl}piperidine-1-carboxamide

Compound B37 was made in a manner similar to Compound B36: 1H-NMR (400 MHz, CDCl3): δ 8.62 (d, 1H), 8.57 (s, 1H), 7.54 (d, 1H), 7.29 (dd, 1H), 7.12 (m, 1H), 6.94 (t, 2H), 5.89 (s, 1H), 4.26 (d, 2H), 3.15 (tt, 1H), 3.00 (td, 2H), 2.77 (s, 3H), 2.52 (s, 3H), 4.16 (qd, 2H), 1.85 (m, 2H). MS (EI) for C25H23F5N6O2. found 535.1 (MH+). Analytical HPLC, ret. time=17.632 min, 95% purity.


Compound B38: N-(2,6-Difluorophenyl)-4-{2-methyl-5-[(1E)-N-{[6-(trifluoromethyl)pyridin-2-yl]oxy}ethanimidoyl]pyrimidin-4-yl}piperidine-1-carboxamide

Compound B38 was made in a manner similar to Compound B36: 1H-NMR (400 MHz, CDCl3): δ 8.57 (s, 1H), 7.90 (t, 1H), 7.45 (t, 2H), 7.11 (m, 1H), 6.93 (t, 2H), 5.88 (s, 1H), 4.24 (d, 2H), 3.23 (tt, 1H), 3.00 (td, 2H), 2.76 (s, 3H), 2.56 (s, 3H), 2.13 (qd, 2H), 1.86 (m, 2H). MS (EI) for C25H23F5N6O2. found 535.1 (MH+). Analytical HPLC, ret. time=18.228 min, 97% purity.


Compound B39: N-[2-Fluoro-6-(trifluoromethyl)phenyl]-4-{2-methyl-5-[(1E)-N-{[2-(trifluoromethyl)pyrimidin-4-yl]oxy}ethanimidoyl]pyrimidin-4-yl}piperidine-1-carboxamide

Compound B39 was made in a manner similar to Compound B36: 1H-NMR (400 MHz, CDCl3): δ 8.79 (d, 1H), 8.57 (s, 1H), 7.45 (m, 1H), 7.40 (d, 1H), 7.33 (m, 2H), 6.08 (s, 1H), 4.20 (d, 2H), 3.15 (tt, 1H), 3.02 (td, 2H), 2.77 (s, 3H), 2.58 (s, 3H), 2.15 (qd, 2H), 1.85 (m, 2H). MS (EI) for C25H22F7N7O2. found 586.1 (MH+). Analytical HPLC, ret. time=18.352 min, 98% purity.


Compound B40: 4-{5-[(1E)-N-{[2-chloro-6-(trifluoromethyl)pyridin-4-yl]oxy}ethanimidoyl]-2-methylpyrimidin-4-yl}-N-(2,6-difluorophenyl)piperidine-1-carboxamide

Compound B40 was made in a manner similar to Compound B36: 1H-NMR (400 MHz, CDCl3): δ 8.56 (s, 1H), 7.44 (d, 1H), 7.36 (d, 1H), 7.12 (m, 1H), 6.94 (t, 2H), 5.90 (s, 1H), 4.26 (d, 2H), 3.11 (m, 1H), 3.01 (t, 2H), 2.77 (s, 3H), 2.51 (s, 3H), 2.21-2.09 (m, 2H), 1.84 (d, 2H). MS (EI) for C25H22ClF5N6O2. found: 569.2 (MH+). Analytical HPLC, ret. time=16.3 min, 97% purity.


Compound B41: 4-{5-[(1Z)—N-{[2-chloro-6-(trifluoromethyl)pyridin-4-yl]oxy}ethanimidoyl]-2-methylpyrimidin-4-yl}-N-(2,6-difluorophenyl)piperidine-1-carboxamide

Z isomer isolated from the same reaction that formed Compound B40. 1H-NMR (400 MHz, CDCl3): δ 8.54 (s, 1H), 7.83 (d, 1H), 7.34 (d, 1H), 7.03 (m, 1H), 6.92-6.82 (m, 2H), 5.82 (s, 1H), 4.14 (d, 2H), 3.42 (m, 1H), 2.67 (s, 3H), 2.06-1.98 (m, 2H), 1.91-1.88 (m, 2H). MS (EI) for C25H22ClF5N6O2. found: 569.2 (MH+). Analytical HPLC, ret. time=15.5 min, 86% purity.


Compound B42: N-(2,6-difluorophenyl)-4-{2-methyl-5-[(1E)-N-{[6-methyl-2-(trifluoromethyl)pyrimidin-4-yl]oxy}ethanimidoyl]pyrimidin-4-yl}piperidine-1-carboxamide

Compound B42 was made in a manner similar to Compound B36: 1H-NMR (400 MHz, CDCl3): δ 8.49 (s, 1H), 7.17 (s, 1H), 7.05 (m, 1H), 6.86 (t, 2H), 5.82 (s, 1H), 4.18 (d, 2H), 3.04 (m, 1H), 2.93 (dd, 2H), 2.69 (s, 3H), 2.54 (s, 3H), 2.49 (s, 3H), 2.12-2.02 (m, 2H), 1.77 (d, 2H). MS (EI) for C25H24F5N7O2. found: 550.2 (MH+). Analytical HPLC, ret. time=13.97 min, 98% purity.


Compound B43: N-(2,6-Difluorophenyl)-4-{2-methyl-5-[(1E)-N-{[3-(trifluoromethyl)phenyl]oxy}ethanimidoyl]pyrimidin-4-yl}piperidine-1-carboxamide
B43.1: tert-Butyl 4-(2-methyl-5-(1-(3-(trifluoromethyl)phenoxyimino)ethyl)pyrimidin-4-yl)piperidine-1-carboxylate

To a stirred solution of B36.1 (63.9 mg, 0.200 mmol) and O-(3-(trifluoromethyl)phenyl)hydroxylamine (53.1 mg, 0.300 mmol) in ethanol (2 mL) at room temperature was added a catalytic amount of cone HCl. After stirring for 1.5 h at 50° C., aqueous saturated NaHCO3 (2 mL) was added and the resulting solution was extracted with EtOAc (3×3 mL). The combined organic layers were concentrated and purified by silica gel column chromatography (Hexane/DCM/EtOAc=3:1:1) to give B8.1 (45 mg, a mixture of E/Z=8.2:1, 47%) as a clear oil.


B43.2: 1-(2-Methyl-4-(piperidin-4-yl)pyrimidin-5-yl)ethanone O-3-(trifluoromethyl)phenyl oxime hydrochloride salt

Intermediate B43.2 was made from the Boc deprotection of intermediate B43.1 using General Procedure 2.


Compound B43

Compound B43 was made from intermediate B43.2 and 2,6-difluorophenyl isocyanate using General Procedure 5. 1H-NMR (400 MHz, CDCl3): δ 8.58 (s, 1H), 7.49 (m, 1H), 7.46 (m, 1H), 7.37 (m, 1H), 7.33 (m, 1H), 7.11 (m, 1H), 6.93 (t, 3H), 5.89 (s, 1H), 4.25 (d, 2H), 3.25 (tt, 1H), 3.00 (td, 2H), 2.76 (s, 3H), 2.49 (s, 3H), 2.14 (qd, 2H), 1.87 (m 2H). MS (EI) for C26H24F5N5O2. found 534.2 (MH+). Analytical HPLC, ret. time=20.780 min, 99% purity.


Compound B44: N-(2,6-Difluorophenyl)-4-{2-methyl-5-[(1Z)—N-{[3-(trifluoromethyl)phenyl]oxy}ethanimidoyl]pyrimidin-4-yl}piperidine-1-carboxamide

Z isomer isolated from the same reaction that formed Compound B43. 1H-NMR (400 MHz, CDCl3): δ 8.39 (s, 1H), 7.40 (m, 2H), 7.29 (d, 1H), 7.22 (d, 1H), 7.11 (m, 1H), 6.93 (t, 2H), 5.86 (s, 1H), 4.19 (d, 2H), 2.90 (t, 2H), 2.77 (s, 3H), 2.72 (tt, 1H), 2.38 (s, 3H), 2.10 (qd, 2H), 1.73 (m, 2H). MS (EI) for C26H24F5N5O2. found 534.2 (MH+). Analytical HPLC, ret. time=20.168 min, 79% purity (contaminated with B43, Analytical HPLC, ret. time=20.772 min, 21%).


Compound B45: N-[2-fluoro-6-(trifluoromethyl)phenyl]-4-{2-methyl-5-[(1E)-N-{[3-(trifluoromethyl)phenyl]oxy}ethanimidoyl]pyrimidin-4-yl}piperidine-1-carboxamide

Compound B45 was made in a manner similar to Compound B43: 1H-NMR (400 MHz, CDCl3): δ 8.58 (s, 1H), 7.46 (m, 3H), 7.34 (m, 4H), 6.09 (s, 1H), 4.20 (d, 2H), 3.26 (tt, 1H), 3.01 (td, 2H), 2.76 (s, 3H), 2.49 (s, 3H), 2.14 (qd, 2H), 1.87 (m, 2H). MS (EI) for C27H24F7N5O2. found 584.2 (MH+). Analytical HPLC, ret. time=21.900 min, 99% purity.


Compound B46: N-(2,6-Difluorophenyl)-4-{2,6-dimethyl-5-[(E)-({[3-(trifluoromethyl)phenyl]oxy}imino)methyl]pyrimidin-4-yl}piperidine-1-carboxamide
B46.1: tert-Butyl 4-(5-(hydroxymethyl)-2,6-dimethylpyrimidin-4-yl)piperidine-1-carboxylate

To a stirred solution of Common Intermediate CI2 (140 mg, 0.400 mmol) in THF (3 mL) at 0° C. was added LiAlH4 (0.32 mL, 1M in THF, 0.32 mmol). After stirring for 1 h at room temperature, 3% NaOH (60 mg) was added at 0° C. with vigorous stirring. The resulting mixture was stirred for 1 h at room temperature and EtOAc (2 mL) was added. The resulting mixture was filtered through Celite and concentrated to give crude B46.1 as a pale yellow foam.


B46.2: tert-Butyl 4-(5-formyl-2,6-dimethylpyrimidin-4-yl)piperidine-1-carboxylate

To a stirred solution of crude B46.1 in dichloromethane (3 mL) at room temperature was added Dess-Martin periodinane (339 mg, 0.800 mmol). After stirring for 1 h, water (3 mL) was added and the resulting solution was filtered through Celite. Dichloromethane was removed in vacuo and the resulting mixture was extracted with EtOAc (3×3 mL). The combined organic layers were concentrated and purified by silica gel column chromatography (Hexane/EtOAc=2:1) to give B46.2 (80 mg, 63%, 2 steps) as a pale yellow oil.


B46.3: tert-Butyl 4-(2,6-dimethyl-5-((3-(trifluoromethyl)phenoxyimino)methyl)pyrimidin-4-yl)piperidine-1-carboxylate

To a stirred solution of B46.2 (31.9 mg, 0.100 mmol), O-(3-(trifluoromethyl)phenyl)hydroxylamine (35.4 mg, 0.200 mmol) and ethanol (1 mL) at room temperature was added a catalytic amount of cone HCl. After stirring for 1 h at room temperature, aqueous saturated NaHCO3 (3 mL) was added and the resulting solution was extracted with EtOAc (2×3 mL). The combined organic layers were concentrated and purified by silica gel column chromatography (Hexane/EtOAc=3:1→5:2) to give B46.3 (31 mg, 65%) as a clear oil.


B46.4: 2,4-Dimethyl-6-(piperidin-4-yl)pyrimidine-5-carbaldehyde O-3-(trifluoromethyl)phenyl oxime hydrochloride salt

Intermediate B46.4 was made from the Boc deprotection of intermediate B46.3 using General Procedure 2.


Compound B46

Compound B46 was made from intermediate B46.4 and 2,6-difluorophenyl isocyanate using General Procedure 5. 1H-NMR (400 MHz, CDCl3): δ 8.77 (s, 1H), 7.48 (m, 2H), 7.36 (m, 2H), 7.12 (m, 1H), 6.94 (t, 2H), 5.89 (s, 1H), 4.26 (d, 2H), 3.40 (tt, 1H), 3.06 (td, 2H), 2.71 (s, 3H), 2.66 (s, 3H), 2.12 (qd, 2H), 1.88 (m, 2H). MS (EI) for C26H24F5N5O2. found 534.1 (MH+). Analytical HPLC, ret. time=20.524 min, 90% purity.


Compound B47: N-(2,6-Difluorophenyl)-2-methyl-4-{2-methyl-5-[(1E)-N-{[3-(trifluoromethyl)phenyl]oxy}ethanimidoyl]pyrimidin-4-yl}piperidine-1-carboxamide
B47.1: Ethyl 4-(1-(tert-butoxycarbonyl)-2-methylpiperidin-4-yl)-2-methylpyrimidine-5-carboxylate

To a stirred solution of ethyl 2-methyl-4-(2-methylpiperidin-4-yl)pyrimidine-5-carboxylate (100 mg, 0.380 mmol), 1,4-dioxane (2 mL) and H2O (0.5 mL) were added DIEA (0.20 mL, 1.1 mmol) and di-t-butyl dicarbonate (124 mg, 0.570 mmol) in sequence. After stirring for 1 h at room temperature, aqueous saturated NH4Cl (3 mL) was added and the resulting solution was extracted with EtOAc (3×3 mL). The combined organic layers were concentrated and purified by silica gel column chromatography (Hexane/EtOAc=4:1→3:1) to give intermediate B47.1 (52 mg, one set of two enantiomers, 38%) as a clear oil.


B47.2: tert-Butyl 4-(5-(hydroxymethyl)-2-methylpyrimidin-4-yl)-2-methylpiperidine-1-carboxylate

Intermediate B47.2 was synthesized from intermediate B47.1 using a method analogous to the method used to synthesize intermediate B46.1 from Common Intermediate CI2.


B47.3: tert-Butyl 4-(5-formyl-2-methylpyrimidin-4-yl)-2-methylpiperidine-1-carboxylate

Intermediate B47.3 was synthesized from intermediate B47.2 using a method analogous to the method used to synthesize intermediate B47.2 from intermediate B47.1.


B47.4: tert-Butyl 4-(5-(1-hydroxyethyl)-2-methylpyrimidin-4-yl)-2-methylpiperidine-1-carboxylate

To a stirred solution of intermediate B47.3 (34.0 mg, 0.106 mmol) in THF (1 mL) at 0° C. was added methylmagnesium bromide (0.15 mL, 1.4M in toluene/THF (3:1), 0.21 mmol). After stirring for 1 h at room temperature, aqueous saturated NH4Cl (2 mL) was added and the resulting solution was extracted with EtOAc (3×2 mL). The combined organic layers were dried over MgSO4 and concentrated to give crude intermediate B47.4.


B47.5: tert-Butyl 4-(5-acetyl-2-methylpyrimidin-4-yl)-2-methylpiperidine-1-carboxylate

Intermediate B47.5 was synthesized from intermediate B47.4 using a method analogous to the method used to synthesize intermediate B46.2 from intermediate B46.1.


B47.6: tert-Butyl 2-methyl-4-(2-methyl-5-(1-(3-(trifluoromethyl)phenoxyimino)ethyl)pyrimidin-4-yl)piperidine-1-carboxylate

Intermediate B47.6 was synthesized from intermediate B47.5 using a method analogous to the method used to synthesize intermediate B43.1 from intermediate B36.1.


B47.7: 1-(2-Methyl-4-(2-methylpiperidin-4-yl)pyrimidin-5-yl)ethanone O-3-(trifluoromethyl)phenyl oxime hydrochloride salt

Intermediate B47.7 was made from the Boc deprotection of intermediate B47.6 using General Procedure 2.


Compound B47

Compound B47 was synthesized from intermediate B47.7 and 2,6-difluorophenyl isocyanate using General Procedure 5. 1H-NMR (400 MHz, CDCl3): δ 8.55 (s, 1H), 7.48 (m, 1H), 7.41 (m, 1H), 7.35 (m, 1H), 7.27 (m, 1H), 7.09 (m, 1H), 6.89 (t, 2H), 5.74 (s, 1H), 3.99 (m, 2H), 3.40 (ddd, 1H), 3.27 (m, 1H), 2.76 (s, 3H), 2.46 (s, 3H), 2.13 (m, 2H), 2.01 (m, 2H), 1.34 (d, 3H). MS (EI) for C27H26F5N5O2. found 548.2 (MH+). Analytical HPLC, ret. time=21.292 min, 90% purity.


Compound B48: (1E)-1-(4-{1-[(2,6-difluorophenyl)acetyl]piperidin-4-yl}-2,6-dimethylpyrimidin-5-yl)butan-1-one O-[3-(trifluoromethyl)phenyl]oxime
B48.1: tert-Butyl 4-(5-(1-hydroxyallyl)-2,6-dimethylpyrimidin-4-yl)piperidine-1-carboxylate

To a solution of intermediate B46.2 (1.03 g, 3.2 mmol) in dry THF (30 mL) was added vinyl magnesium chloride (5.0 mL, 1.6M in THF, 8 mmol). The resulting mixture was stirred at room temperature and monitored by LC-MS until complete. Upon completion, the reaction mixture was diluted with saturated aqueous NH4Cl and extracted with EtOAc (3×). The combined organic extractions were washed with saturated aqueous NaCl (1×), dried (Na2SO4) and concentrated in vacuo to give intermediate B48.1 which was used as is in subsequent reactions. 1H-NMR (400 MHz, CDCl3): δ 6.12 (m, 1H), 5.70 (m, 1H), 5.22 (m, 2H), 4.22 (m, 2H), 3.24 (m, 1H), 2.74 (m, 2H), 2.62 (s, 3H), 2.55 (s, 3H), 2.15 (br s, 1H), 1.90 (m, 2H), 1.60 (m, 2H), 1.47 (s, 9H). MS (EI) for C19H29N3O3. found: 348.3 (MH+).


B48.2: tert-Butyl 4-(5-acryloyl-2,6-dimethylpyrimidin-4-yl)piperidine-1-carboxylate

Intermediate B48.2 was synthesized from intermediate B48.1 using a method analogous to the method used to synthesize intermediate B46.2 from intermediate B46.1. Crude material was purified by flash chromatography to give intermediate B48.2 (959 mg, 90% yield).


B48.3: tert-Butyl 4-(5-butyryl-2,6-dimethylpyrimidin-4-yl)piperidine-1-carboxylate

To a solution of intermediate B48.2 (959 mg, 2.8 mmol) in dry THF (30 mL) was added MeMgBr (5.5 mL, 1.4M in 1:3 THF:Toluene, 7.7 mmol). The resulting mixture was stirred at room temperature for 1 hour, at which time, it was diluted with saturated aqueous NH4Cl and extracted with EtOAc (3×). The combined organic extractions were washed with saturated aqueous NaCl (1×), dried (Na2SO4) and concentrated in vacuo. The resulting residue was purified by flash chromatography (18% EtOAc, 80% heptanes, 2% 7N NH3 in MeOH) to give intermediate B48.3 (643 mg, 64% yield). 1H-NMR (400 MHz, CDCl3): δ 4.22 (m, 2H), 2.71 (m, 4H), 2.66 (s, 3H), 2.50 (m, 1H), 2.38 (s, 3H), 1.92 (m, 2H), 1.78 (m, 2H), 1.65 (m, 2H), 1.47 (s, 9H) 1.02 (t, 3H). MS (EI) for C20H31N3O3. found: 362.3 (MH+).


B48.4: 1-(2,4-Dimethyl-6-(piperidin-4-yl)pyrimidin-5-yl)butan-1-one hydrochloride salt

Intermediate B48.4 was made from the Boc deprotection of intermediate B48.3 using General Procedure 2.


B48.5: 1-(4-(1-(2-(2,6-Difluorophenyl)acetyl)piperidin-4-yl)-2,6-dimethylpyrimidin-5-yl)butan-1-one

Intermediate B48.5 was made from intermediate B48.4 and 2,6-difluorophenylacetic acid using General Procedure 4.


Compound B48

Compound B48 was synthesized from intermediate B48.5 using a method analogous to the method used to synthesize intermediate B43.1 from intermediate B36.1. H-NMR (400 MHz, CDCl3): δ 7.43 (m, 2H), 7.37-7.17 (m, 3H), 6.88 (m, 2H), 4.75 (m, 1H), 4.10 (m, 1H), 3.73 (m, 2H), 3.14 (m, 1H), 2.85 (m, 2H), 2.70 (s, 3H), 2.68-2.48 (comp m, 2H), 2.47 (s, 3H), 1.75 (m, 2H), 1.50 (m, 4H), 1.03 (t, 3H). MS (EI) for C30H31F5N4O2. found: 575.3 (MH+). Analytical HPLC, ret. time=25.00 min, 80% purity.


Compound B49: (1Z)-1-(4-{1-[(2,6-difluorophenyl)acetyl]piperidin-4-yl}-2,6-dimethylpyrimidin-5-yl)butan-1-one O-[3-(trifluoromethyl)phenyl]oxime

Z isomer isolated from the same reaction that formed Compound B48. 1H-NMR (400 MHz, CDCl3): δ 7.37 (m, 2H), 7.30-7.15 (m, 3H), 6.88 (m, 2H), 4.70 (dd, 1H), 4.07 (dd, 1H), 3.72 (m, 2H), 3.12 (dt, 1H), 2.71 (s, 3H), 2.65 (m, 2H), 2.56 (m, 2H), 2.38 (s, 3H), 2.15 (m, (1H), 1.90 (m, 1H), 1.73 (m, 4H), 1.09 (t, 3H). MS (EI) for C30H31F5N4O2. found: 575.3 (MH+). Analytical HPLC, ret. time=24.74 min, 98% purity.


Compound B50: N-(2,6-Difluorophenyl)-4-{2-(methylthio)-5-[(1E)-N-{[3-(trifluoromethyl)phenyl]oxy}ethanimidoyl]pyrimidin-4-yl}piperidine-1-carboxamide
B50.1: Ethyl 4-(1-(tert-butoxycarbonyl)piperidin-4-yl)-2-(methylthio)pyrimidine-5-carboxylate

To a suspension of S-methyl thiourea sulfate (5.5 g, 39 mmol) in EtOH (50 mL) was added EtONa (2.7 g, 39 mmol). The resulting mixture was stirred for 15 min at room temperature. Common Intermediate CI1.1 in EtOH (30 mL) was added. The mixture was heated at 70° C. with stirring for 2 h. The solvent was removed under reduced pressure. The residue was stirred in EtOAc (500 mL) and filtered. Concentration of the filtrate gave the crude product, which was further purified by flash column chromatography.


B50.2: 4-(1-(tert-Butoxycarbonyl)piperidin-4-yl)-2-(methylthio)pyrimidine-5-carboxylic acid

Intermediate B50.2 was made from the ester hydrolysis of intermediate B50.1 using General Procedure 1.


B50.3: tert-Butyl 4-(5-acetyl-2-(methlythio)pyrimidin-4-yl)piperidine-1-carboxylate

Intermediate B50.3 was synthesized from intermediate B50.2 using a method analogous to the method used to synthesize intermediate B36.1 from intermediate A116.1.


B50.4: 1-(2-(Methylthio)-4-(piperidin-4-yl)pyrimidin-5-yl)ethanone hydrochloride salt

Intermediate B50.4 was made from the Boc deprotection of intermediate B50.3 using General Procedure 2.


B50.5: 4-(5-Acetyl-2-(methlythio)pyrimidin-4-yl)-N-(2,6-difluorophenyl)piperidine-1-carboxamide

Intermediate B50.5 was made from intermediate B50.4 and 2,6-difluorophenyl isocyanate using General Procedure 5.


Compound B50

Compound B50 was made from intermediate B50.5 using a method analogous to the method used to synthesize intermediate B43.1 from intermediate B116.1. 1H NMR (400 MHz, CDCl3) δ 8.47 (s, 1H), 7.51-7.43 (m, 2H), 7.39-7.30 (m, 2H), 7.17-7.06 (m, 1H), 6.94 (t, 2H), 5.89 (s, 1H), 4.24 (d, 2H), 3.29 (t, 1H), 2.99 (t, 2H), 2.61 (s, 3H), 2.48 (s, 3H), 2.12 (td, 2H), 1.90 (d, 2H). MS (EI) for C26H24F5N5O2S. found: 566.2 (MH+). Analytical HPLC, ret. time=23.54 min, 98% purity.


Compound B51: 4-{2-Amino-5-[(1E)-N-{[3-(trifluoromethyl)phenyl]oxy}ethanimidoyl]pyrimidin-4-yl}-N-(2,6-difluorophenyl)piperidine-1-carboxamide
B51.1: N-(2,6-Difluorophenyl)-4-(2-(methylsulfonyl)-5-(1-(3-(trifluoromethyl)phenoxyimino)ethyl)pyrimidin-4-yl)piperidine-1-carboxamide

Intermediate B51.1 was synthesized from Compound B50 using General Procedure 6.


Compound B51

Compound B51 was synthesized from intermediate B51.1 using General Procedure 7. 1H NMR (400 MHz, CDCl3) δ 8.28 (s, 1H), 7.46 (dd, 2H), 7.33 (dd, 2H), 7.11 (t, 1H), 6.94 (t, 2H), 5.89 (s, 1H), 5.19 (s, 2H), 4.23 (d, 2H), 3.25 (s, 1H), 2.97 (t, 2H), 2.44 (s, 3H), 2.05 (dd, 2H), 1.86 (dd, 2H). MS (EI) for C25H23F5N6O2. found: 535.2 (MH+). Analytical HPLC, ret. time=17.42 min, 98% purity.


Compound B52: N-(2,6-Difluorophenyl)-4-{2-(methylthio)-5-[(1E)-N-{[2-(trifluoromethyl)pyridin-4-yl]oxy}ethanimidoyl]pyrimidin-4-yl}piperidine-1-carboxamide
B52.1: N-(2,6-Difluorophenyl)-4-(5-(1-(hydroxyimino)ethyl)-2-(methylthio)pyrimidin-4-yl)piperidine-1-carboxamide

Intermediate B52.1 was made from intermediate B50.5 using a method analogous to the method used to synthesize intermediate B116.2 from intermediate B116.1.


Compound B52

To a solution of intermediate B52.1 in diemthylacetamide (2 mL) was added sodium hydride (40 mg, 1.20 mmol, 60% in mineral oil) at 0° C. The reaction mixture was allowed to warm up to room temperature for 15 min. To this heterogeneous mixture was added 4-chloro-2-(trifluoromethyl)pyridine (119 mg, 0.66 mmol) and stirred for 1 h. The reaction mixture was quenched with water at 0° C. and partitioned with EtOAc. The organic layer was washed with brine, dried over MgSO4 and concentrated. The resulting crude material was purified by flash column chromatography to give a (E/Z) mixture of Compound B52 (210 mg, 68%, E/Z=4.5:1). 1H NMR (400 MHz, CDCl3) δ 8.63 (d, 1H), 8.47 (s, 1H), 7.54 (t, 1H), 7.32-7.26 (m, 1H), 7.17-7.07 (m, 1H), 6.99-6.90 (m, 2H), 5.91 (s, 1H), 4.26 (d, 2H), 3.20 (dd, 1H), 3.06-2.94 (dt, 2H), 2.62 (s, 3H), 2.51 (s, 3H), 2.21-2.07 (m, 2H), 1.88 (m, 2H). MS (EI) for C25H23F5N6O2S. found: 567.2 (MH+). Analytical HPLC, ret. time=20.80 min, 99% purity.


Compound B53: 4-{2-amino-5-[(1E)-N-{[2-(trifluoromethyl)pyridin-4-yl]oxy}ethanimidoyl]pyrimidin-4-yl}-N-(2,6-difluorophenyl)piperidine-1-carboxamide
B53.1: N-(2,6-Difluorophenyl)-4-(2-(methylsulfonyl)-5-(1-(2-(trifluoromethyl)pyridin-4-yloxyimino)ethyl)pyrimidin-4-yl)piperidine-1-carboxamide

Intermediate B53.1 was synthesized from Compound B52 using General Procedure 6.


Compound B53

Compound B53 was synthesized from intermediate B53.1 using General Procedure 7. 1H NMR (400 MHz, CDCl3) δ 8.61 (d, 1H), 8.27 (s, 1H), 7.54 (d, 1H), 7.28 (dd, 1H), 7.12 (tt, 1H), 6.99-6.87 (m, 2H), 5.95 (s, 1H), 5.37 (s, 2H), 4.24 (dd, 2H), 3.16 (tt, 1H), 3.04-2.89 (m, 2H), 2.47 (s, 3H), 2.06 (m, 2H), 1.84 (d, 2H). MS (EI) for C24H22F5N7O2. found: 373.2 (not shown MH+). Analytical HPLC, ret. time=11.66 min, 99% purity.


Compound B54: 4-{2-Amino-5-[(1E)-N-{[2-(trifluoromethyl)pyrimidin-4-yl]oxy}ethanimidoyl]pyrimidin-4-yl}-N-(2,6-difluorophenyl)piperidine-1-carboxamide

Compound B54 was made in a manner similar to Compounds B52 and B53: 1H NMR (400 MHz, CDCl3) δ 8.78 (d, 1H), 8.27 (s, 1H), 7.41 (d, 1H), 7.17-7.07 (m, 1H), 6.98-6.87 (m, 2H), 5.91 (s, 1H), 5.32 (d, 2H), 4.24 (d, 2H), 3.14 (m, 1H), 2.98 (dd, 2H), 2.54 (s, 3H), 2.10-1.97 (m, 2H), 1.93-1.77 (m, 2H). MS (EI) for C23H21F5N8O2. found: 537.2 (MH+). Analytical HPLC, ret. time=11.24 min, 99% purity.


Compound B55: 4-{2-Amino-5-[(1E)-N-{[2-chloro-6-(trifluoromethyl)pyridin-4-yl]oxy}ethanimidoyl]pyrimidin-4-yl}-N-(2,6-difluorophenyl)piperidine-1-carboxamide

Compound B55 was made in a manner similar to Compounds B52 and B53: 1H NMR (400 MHz, CDCl3) δ 8.25 (s, 1H), 7.44 (d, 1H), 7.36 (d, 1H), 7.19-7.05 (m, 1H), 6.94 (t, 2H), 5.95 (s, 1H), 5.47 (d, 2H), 4.25 (d, 2H), 3.21-3.06 (m, 1H), 2.96 (dt, 2H), 2.48 (d, 3H), 2.14-1.97 (m, 2H), 1.83 (d, 2H). MS (EI) for C24H21ClF5N7O2. found: 570.1 (MH+). Analytical HPLC, ret. time=13.94 min, 99% purity.


Compound B56: 4-(2-Amino-5-{(1E)-N-[(2,6-difluoropyridin-4-yl)oxy]ethanimidoyl}pyrimidin-4-yl)-N-(2,6-difluorophenyl)piperidine-1-carboxamide

Compound B56 was made in a manner similar to Compounds B52 and B53: 1H NMR (400 MHz, CDCl3) δ 8.26 (s, 1H), 7.18-7.07 (m, 1H), 6.94 (t, 2H), 6.63 (s, 2H), 5.91 (s, 1H), 5.25 (s, 2H), 4.25 (d, 2H), 3.12 (dd, 1H), 2.99 (t, 2H), 2.46 (d, 3H), 2.06 (ddd, 2H), 1.83 (d, 2H). MS (EI) for C23H21F4N7O2. found: 504.2 (MH+). Analytical HPLC, ret. time=11.12 min, 99% purity.


Compound B57: 4-(2-Amino-5-{(1Z)—N-[(2,6-difluoropyridin-4-yl)oxy]ethanimidoyl}pyrimidin-4-yl)-N-(2,6-difluorophenyl)piperidine-1-carboxamide

Z isomer isolated from the same reaction that formed Compound B56. 1H NMR (400 MHz, CDCl3) δ 8.28 (bs, 1H), 7.19-7.05 (m, 1H), 6.94 (t, 2H), 6.82 (dd, 1H), 6.40 (d, 1H), 5.90 (s, 1H), 5.23 (s, 2H), 4.24 (d, 2H), 3.20 (t, 1H), 3.00 (t, 2H), 2.47 (s, 3H), 2.11-1.96 (m, 2H), 1.84 (m, 2H). MS (EI) for C23H21F4N7O2. found: 504.2 (MH+). Analytical HPLC, ret. time=11.04 min, 99% purity.


Compound B58: 4-[5-{(1E)-N-[(2-Chloropyridin-4-yl)oxy]ethanimidoyl}-2-(methylthio)pyrimidin-4-yl]-N-(2,6-difluorophenyl)piperidine-1-carboxamide
B58.1: 2-(2-Chloropyridin-4-yloxy)isoindoline-1,3-dione

To a solution of N-hydroxyphthalimide (1.34 g, 8.21 mmol), copper acetate (1.49 g, 8.21 mmol), 2-chloro-4-pyridnylboronic acid (2.58 g, 16.4 mmol) in dichloroethane (30 mL) was added pyridine (0.73 mL, 9.035 mmol) at room temperature. The resulting mixture was stirred for 18 h and diluted with DCM. The precipitate was filtered over Celite, and the filtrate concentrated. The residue was purified by flash column chromatography to give intermediate B58.1 (538 mg, 23.9%); 1H NMR (400 MHz, CDCl3-d) δ 8.34 (d, 1H), 8.02-7.94 (m, 2H), 7.93-7.85 (m, 2H), 7.07 (d, 1H), 7.03 (dd, 1H).


B58.2: O-(2-Chloropyridin-4-yl)hydroxylamine

A mixture of intermediate B58.1 (520 mg, 1.89 mmol) and hydrazine hydrate (0.28 mL, 5.68 mmol) was stirred in MeOH-DCM (1:1) for 18 h. The reaction mixture was diluted with DCM and partitioned with saturated aqueous NaHCO3. The resulting solution was extracted with DCM (3×50 mL). The combined organic layers were washed with brine, dried over MgSO4, concentrated in vacuo and purified by flash column chromatography to give intermediate B58.2 (66 mg, 23.8%); MS (EI) for C5H5ClN2O. found 144.01 (MH+).


B58.3: tert-Butyl 4-(5-(1-(2-chloropyridin-4-yloxyimino)ethyl)-2-(methylthio)pyrimidin-4-yl)piperidine-1-carboxylate

Intermediate B58.3 was synthesized from intermediate B50.3 and intermediate B58.2 using a method analogous to the method that was used to synthesize intermediate B43.1 from intermediate B36.1.


B58.4: 1-(2-(Methylthio)-4-(piperidin-4-yl)pyrimidin-5-yl)ethanone O-2-chloropyridin-4-yl oxime hydrochloride salt

Intermediate B58.4 was made from the Boc deprotection of intermediate B58.3 using General Procedure 2.


Compound B58

Compound B58 was made from intermediate B58.4 and 2,6-difluorophenyl isocyanate using General Procedure 5. 1H NMR (400 MHz, CDCl3) δ 8.46 (s, 1H), 8.29 (d, 1H), 7.21 (d, 1H), 7.12 (d, 1H), 7.04 (dd, 1H), 6.94 (t, 2H), 5.91 (s, 1H), 4.27 (d, 2H), 3.21 (t, 1H), 3.02 (t, 2H), 2.62 (s, 3H), 2.48 (s, 3H), 2.21-2.06 (m, 2H), 1.88 (m, 2H). MS (EI) for C24H23ClF2N6O2S. found: 533.2 (MH+). Analytical HPLC, ret. time=19.62 min, 98% purity.


Compound B59: 4-(2-Amino-5-{(1E)-N-[(2-chloropyridin-4-yl)oxy]ethanimidoyl}pyrimidin-4-yl)-N-(2,6-difluorophenyl)piperidine-1-carboxamide
B59.1: 4-(5-(1-(2-Chloropyridin-4-yloxyimino)ethyl)-2-(methylsulfonyl)pyrimidin-4-yl)-N-(2,6-difluorophenyl)piperidine-1-carboxamide

Intermediate B59.1 was synthesized from Compound B58 using General Procedure 6.


Compound B59

Compound B59 was synthesized from intermediate B59.1 using General Procedure 7. 1H NMR (400 MHz, CDCl3) δ 8.27 (d, 2H), 7.21 (d, 1H), 7.11 (dd, 1H), 7.03 (dd, 1H), 6.94 (t, 2H), 5.90 (s, 1H), 5.29 (s, 2H), 4.25 (d, 2H), 3.17 (t, 1H), 3.00 (t, 2H), 2.44 (s, 3H), 2.14-1.98 (m, 2H), 1.85 (dd, 2H). MS (EI) for C23H22ClF2N7O2. found: 502.2 (MH+). Analytical HPLC, ret. time=13.48 min, 99% purity.


Compound B60: N-(2,6-Difluorophenyl)-4-{2-(ethylamino)-5-[(1E)-N-{[2-(trifluoromethyl)pyridin-4-yl]oxy}ethanimidoyl]pyrimidin-4-yl}piperidine-1-carboxamide

To a solution of intermediate B53.1 (a mixture of E and Z isomers) (70 mg, 0.12 mmol) in dioxane (2 mL) was added ethylamine in THF (0.18 mL, 0.35 mmol) at room temperature and the resulting mixture was stirred for 2 h. The reaction mixture was then concentrated in vacuo and purified by preparative HPLC to give Compound B60 (20.7 mg, 31.4%). 1H NMR (400 MHz, CDCl3) δ 8.61 (d, 1H), 8.21 (bs, 1H), 7.54 (d, 1H), 7.31-7.27 (m, 1H), 7.17-7.06 (m, 1H), 6.99-6.87 (m, 2H), 6.34 (bs, 1H), 5.99 (s, 1H), 4.24 (d, 2H), 3.57-3.44 (m, 2H), 3.20 (t, 1H), 2.98 (t, 2H), 2.46 (s, 3H), 2.17-1.98 (m, 2H), 1.86 (d, 2H), 1.27 (t, 3H). MS (EI) for C26H26F5N7O2. found: 564.2 (MH+). Analytical HPLC, ret. time=18.62 min, 96% purity.


Compound B61: N-(2,6-Difluorophenyl)-4-{2-(dimethylamino)-5-[(1E)-N-{[2-(trifluoromethyl)pyridin-4-yl]oxy}ethanimidoyl]pyrimidin-4-yl}piperidine-1-carboxamide

Compound B61 was made in a manner similar to Compound B60: 1H NMR (400 MHz, CDCl3) δ 8.60 (d, 1H), 8.31 (s, 1H), 7.54 (t, 1H), 7.30-7.26 (m, 1H), 7.17-7.07 (m, 1H), 6.94 (t, 2H), 5.91 (s, 1H), 4.23 (d, 2H), 3.23 (m, 2H, 6H), 3.00 (t, 2H), 2.46 (s, 3H), 2.10 (qd, 2H), 1.88 (d, 2H). MS (EI) for C26H26F5N7O2. found: 564.2 (MH+). Analytical HPLC, ret. time=19.33 min, 98% purity.


Compound C40: 4-(2,6-Dimethyl-5-{5-[2-(trifluoromethyl)pyrimidin-4-yl]-1,3,4-oxadiazol-2-yl}pyrimidin-4-yl)-N-[2-fluoro-6-(trifluoromethyl)phenyl]piperidine-1-carboxamide
C40.1: 2-(Trifluoromethyl)pyrimidine-4-carbohydrazide

To a solution of methyl 2-(trifluoromethyl)pyrimidine-4-carboxylate (1.50 g, 7.28 mmol) in 10 mL of anhydrous MeOH was added hydrazine monohydrate (1.09 g, 21.83 mmol). The resulting solution was heated at 50° C. with stirring for 5 min, at which time the reaction was completed. The reaction mixture, as a yellow solution, was reduced to ⅓ of the volume in vacuo. The precipitate thus formed was filtered, washed with MeOH, and dried to give 1.16 g of intermediate C40.1 as a yellow crystalline solid. The combined filtrate was concentrated under high vacuum to afford an additional 0.20 g of the hydrazide product as a yellow solid. 1H-NMR (400 MHz, CDCl3): δ 9.14 (d, 1H), 8.94 (br. s, 1H), 8.27 (d, 1H), 4.16 (d, 2H).


C40.2: tert-Butyl 4-(2,6-dimethyl-5-(2-(2-(trifluoromethyl)pyrimidine-4-carbonyl)hydrazinecarbonyl)pyrimidin-4-yl)piperidine-1-carboxylate

A solution of intermediate A121.1 (500 mg, 1.49 mmol), EDC (329 mg, 1.71 mmol), and HOBt (232 mg, 1.71 mmol) in DMA (10 mL) was stirred at 25° C. for 1.5 h. To this mixture was added intermediate C40.1 (344 mg, 1.67 mmol). The resulting mixture was stirred at 40° C. for 17 h. After cooling to room temperature, the reaction mixture was diluted with EtOAc, washed with water (3×) and brine, dried (magnesium sulfate), and concentrated in vacuo to dryness, yielding a solid (793 mg). LC/MS analysis of the resulting residue showed the presence of intermediate C40.2 as the major product. MS (EI) for C23H28F3N7O4. found 524.2 (MH+). The crude product was used directly in the next reaction.


C40.3: tert-Butyl 4-(2,6-dimethyl-5-(5-(2-(trifluoromethyl)pyrimidin-4-yl)-1,3,4-oxadiazol-2-yl)pyrimidin-4-yl)piperidine-1-carboxylate

The entire amount (793 mg) of crude product obtained from the previous step (intermediate C40.2) was dissolved in 30 mL of anhydrous MeCN. To this solution was added K2CO3 (850 mg, 4.45 mmol), followed by p-toluenesulfonyl chloride (1236 mg, 4.94 mmol). The mixture was stirred at 50° C. for 1 h. After removal of solvent in vacuo, the crude mixture was diluted with EtOAc, washed with water (3×) and brine, dried (magnesium sulfate), and concentrated in vacuo to dryness, affording intermediate C40.3 as a solid (761 mg). MS (EI) for C23H26F3N7O3. found 506.2 (MH+). The crude product was used directly for the subsequent reaction.


C40.4: 2-(2,4-Dimethyl-6-(piperidin-4-yl)pyrimidin-5-yl)-5-(2-(trifluoromethyl)pyrimidin-4-yl)-1,3,4-oxadiazole hydrochloride salt

Intermediate C40.4 was made from the Boc deprotection of intermediate C40.3 using General Procedure 2.


Compound C40

Compound C40 was made from intermediate C40.4 and 1-fluoro-2-isocyanato-3-(trifluoromethyl)benzene using General Procedure 5. 1H-NMR (400 MHz, CDCl3): δ 9.22 (d, 1H), 8.48 (d, 1H), 7.44 (m, 1H), 7.34 (m, 2H), 6.08 (s, 1H), 4.18 (d, 2H), 2.97 (m, 3H), 2.79 (s, 3H), 2.60 (s, 3H), 2.12 (qd, 2H), 1.91 (m, 2H). MS (EI) for C26H21F7NO2. found 611.2 (MH+). Analytical HPLC, ret. time=17.144 min, 99% purity.


Compound C41: 4-{1-[(2-Chlorophenyl)acetyl]piperidin-4-yl}-2,6-dimethyl-5-{5-[2-(trifluoromethyl)pyrimidin-4-yl]-1,3,4-oxadiazol-2-yl}pyrimidine

Compound C41 was made from intermediate C40.3 and 2-chlorophenylacetic acid using General Procedure 4. 1H-NMR (400 MHz, CDCl3): δ 9.21 (d, H), 8.46 (d, 1H), 7.38 (dd, 1H), 7.32 (dd, 1H), 7.26-7.19 (m, 2H), 4.77 (d, 1H), 3.85 (s, 2H), 3.04 (m, 1H), 2.94 (m, 1H), 2.76 (s, 3H), 2.60 (m, 1H), 2.58 (s, 3H), 2.02-1.91 (m, 2H), 1.86-1.83 (m, 2H). MS (EI) for C26H23ClF3N7O2. found: 558.2 (MH+). Analytical HPLC, ret. time=19.3 min, 98% purity.


Compound C42: 4-{1-[(3-Chloropyridin-2-yl)acetyl]piperidin-4-yl}-2,6-dimethyl-5-{5-[2-(trifluoromethyl)pyrimidin-4-yl]-1,3,4-oxadiazol-2-yl}pyrimidine

Compound C42 was made in a manner similar to Compound C41: 1H-NMR (400 MHz, CDCl3): δ 9.21 (d, 1H), 8.47-8.45 (m, 2H), 7.68 (dd, 1H), 7.17 (dd, 1H), 4.76 (d, 1H), 4.08 (dd, 2H), 3.99 (d, 1H), 3.10 (m, H), 2.96 (m, 1H), 2.77 (s, 3H), 2.61 (m, 1H), 2.58 (s, 3H), 2.07-1.95 (m, 2H), 1.90-1.81 (m, 2H). MS (EI) for C25H22ClF3N8O2. found: 599.2 (MH+). Analytical HPLC, ret. time=14.6 min, 98% purity.


Compound C43: 4-{1-[(2,6-difluorophenyl)(difluoro)acetyl]piperidin-4-yl}-2,6-dimethyl-5-{5-[2-(trifluoromethyl)pyrimidin-4-yl]-1,3,4-oxadiazol-2-yl}pyrimidine

Compound C43 was made from intermediate C40.3 and intermediate A116.4 using a method analogous to the method that was used to synthesize Compound A116 from intermediate A116.3 and intermediate A116.4. 1H-NMR (400 MHz, CDCl3): δ 9.22 (d, 1H), 8.47 (d, 1H), 7.44 (m, 1H), 6.98 (t, 2H), 4.68 (d, 1H), 3.09 (t, 1H), 3.00 (m, 1H), 2.78 (s, 3H), 2.77 (t, 1H), 2.60 (s, 3H), 2.12-2.00 (m, 2H), 1.93-1.88 (m, 2H). MS (EI) for C26H20F7N7O2. found: 596.1 (MH+). Analytical HPLC, ret. time=16.10 min, 98% purity.


Compound C44: 4-{1-[Difluoro(2-fluorophenyl)acetyl]piperidin-4-yl}-2,6-dimethyl-5-{5-[2-(trifluoromethyl)pyrimidin-4-yl]-1,3,4-oxadiazol-2-yl}pyrimidine

Compound C44 was made in a manner similar to Compound C43: 1H-NMR (400 MHz, CDCl3): δ 9.15 (d, 1H), 8.40 (d, 1H), 7.52 (t, 1H), 7.42 (m, 1H), 7.16 (m, 1H), 7.09 (t, 1H), 4.63 (d, 1H), 4.22 (d, 1H), 3.02-2.90 (m, 2H), 2.71 (s, 3H), 2.68 (t, 1H), 2.53 (s, 3H), 2.03-1.77 (m, 4H). MS (EI) for C26H21F6N7O2. found: 578.1 (MH+). Analytical HPLC, ret. time=16.02 min, 98% purity.


Compound C45: 2-Chlorophenyl 4-(2,6-dimethyl-5-{5-[2-(trifluoromethyl)pyrimidin-4-yl]-1,3,4-oxadiazol-2-yl}pyrimidin-4-yl)piperidine-1-carboxylate

Compound C45 was made from intermediate C40.3 and 2-chlorophenyl chloroformate using a method analogous to the method that was used to synthesize Compound A119 from intermediate A116.3 and 2-chlorophenyl chloroformate. 1H-NMR (400 MHz, CDCl3): δ 9.22 (d, 1H), 8.48 (d, 1H), 7.42 (dd, 1H), 7.30-7.23 (m, 2H), 7.16 (m, 1H), 4.50 (d, 1H), 4.36 (d, 1H), 3.05 (t, 1H), 2.97 (m, 1H), 2.88 (t, 1H), 2.79 (s, 3H), 2.60 (s, 3H), 2.20-2.10 (m, 2H), 1.91 (m, 2H). MS (EI) for C25H21ClF3N7O3. found: 560.2 (MH+). Analytical HPLC, ret. time=16.70 min, 92% purity.


Compound C46: N-(2,6-Difluorophenyl)-4-(2,6-dimethyl-5-{5-[2-(trifluoromethyl)pyrimidin-4-yl]-1,3,4-oxadiazol-2-yl}pyrimidin-4-yl)piperidine-1-carbothioamide

Compound C46 was made from intermediate C40.4 and 2,6-difluorophenyl isothiocyanate using General Procedure 5. 1H-NMR (400 MHz, CDCl3): δ 9.23 (d, 1H), 8.48 (d, 1H), 7.24 (m, 1H), 6.98 (t, 2H), 6.50 (s, 1H), 4.83 (d, 2H), 3.22 (td, 2H), 3.08 (tt, 1H), 2.79 (s, 3H), 2.61 (s, 3H), 2.22 (qd, 2H), 1.98 (m, 2H). MS (EI) for C25H21F5N8OS. found 577.2 (MH+). Analytical HPLC, ret. time=18.948 min, 96% purity.


Compound C47: 4-(2,6-Dimethyl-5-{5-[2-(trifluoromethyl)pyrimidin-4-yl]-1,3,4-oxadiazol-2-yl}pyrimidin-4-yl)-N-[2-(trifluoromethyl)phenyl]piperidine-1-carbothioamide

Compound C47 was made in a manner similar to Compound C46: 1H-NMR (400 MHz, CDCl3): δ 9.22 (d, 1H), 8.46 (d, 1H), 7.65 (d, 1H), 7.54 (m, 2H), 7.29 (m, 2H), 7.18 (s, 1H), 4.70 (d, 2H), 3.11 (td, 2H), 3.07 (tt, 1H), 2.78 (s, 3H), 2.61 (s, 3H), 2.18 (qd, 2H), 1.92 (m, 2H). MS (EI) for C26H22F6N8OS. found 609.2 (MH+). Analytical HPLC, ret. time=20.068 min, 91% purity.


Compound C48: 4-(2-Amino-6-methyl-5-{5-[2-(trifluoromethyl)pyrimidin-4-yl]-1,3,4-oxadiazol-2-yl}pyrimidin-4-yl)-N-(2,6-difluorophenyl)piperidine-1-carboxamide
C48.1: Methyl/Ethyl 4-(1-(tert-butoxycarbonyl)piperidin-4-yl)-6-methyl-2-(methylthio)pyrimidine-5-carboxylate

To a suspension of S-methyl thiourea sulfate (1.15 g, 8.3 mmol) in EtOH (10 mL) was added EtONa (640 mg, 9.2 mmol). The resulting mixture was stirred for 15 min at room temperature. Common Intermediate CI2.1 (1.9 g, 4.9 mmol) in EtOH (15 mL) was added. The mixture was heated at 70° C. with stirring. The reaction was monitored by LC-MS. Once complete, the solvent was removed under reduced pressure. The resulting residue was stirred in EtOAc and any insoluble material was filtered. Concentration of the filtrate gave the crude product, which was further purified by flash column chromatography to give intermediate C48.1 (623 mg, 30%).


C48.2: 4-(1-(tert-Butoxycarbonyl)piperidin-4-yl)-6-methyl-2-(methylthio)pyrimidine-5-carboxylic acid

Intermediate C48.2 was made from the ester hydrolysis of intermediate C48.1 using General Procedure 1. 1H-NMR (400 MHz, DMSO-d6): δ 14.0 (br. s, 1H), 3.96 (m, 2H), 2.97 (m, 1H), 2.77 (m, 2H), 2.50 (s, 3H, overlap with DMSO-d6), 2.41 (s, 3H), 1.68-1.60 (m, 4H), 1.41 (s, 9H). MS (EI) for C17H25N3O4S. found: 368.2 (MH+).


C48.3: tert-Butyl 4-(6-methyl-2-(methylthio)-5-(2-(2-(trifluoromethyl)pyrimidine-4-carbonyl)hydrazinecarbonyl)pyrimidin-4-yl)piperidine-1-carboxylate

Intermediate C48.3 was made from intermediate C48.2 and intermediate C40.1 using a method analogous to the method that was used to synthesize intermediate C40.2 from intermediate A121.1 and intermediate C40.1. MS (EI) for C23H28F3N7O4S. found: 556.2 (MH+).


C48.4: tert-Butyl 4-(6-methyl-2-(methlythio)-5-(5-(2-(trifluoromethyl)pyrimidin-4-yl)-1,3,4-oxadiazol-2-yl)pyrimidin-4-yl)piperidine-1-carboxylate compound with 1,3-difluorobenzene (1:1)

Intermediate C48.4 was made from intermediate C48.3 using a method analogous to the method that was used to synthesize intermediate C40.3 from intermediate C40.2. 1H-NMR (400 MHz, CDCl3): δ 9.21 (d, 1H), 8.46 (d, 1H), 4.22 (m, 2H), 2.90 (m, 1H), 2.70 (m, 2H), 2.62 (s, 3H), 2.57 (s, 3H), 1.98-1.92 (m, 2H), 1.82 (d, 2H), 1.47 (s, 9H). MS (EI) for C23H26F3N7O3S. found: 538.2 (MH+).


C48.5: 2-(4-Methyl-2-(methylthio)-6-(piperidin-4-yl)pyrimidin-5-yl)-5-(2-(trifluoromethyl)pyrimidin-4-yl)-1,3,4-oxadiazole hydrochloride salt

Intermediate C48.5 was made from the Boc deprotection of intermediate C48.4 using General Procedure 2.


C48.6: N-(2,6-Difluorophenyl)-4-(6-methyl-2-(methylthio)-5-(5-(2-(trifluoromethyl)pyrimidin-4-yl)-1,3,4-oxadiazol-2-yl)pyrimidin-4-yl)piperidine-1-carboxamide

Intermediate C48.6 was made from intermediate C48.5 and 2,6-difluorophenyl isocyanate using General Procedure 5.


C48.7: N-(2,6-Difluorophenyl)-4-(6-methyl-2-(methylsulfonyl)-5-(5-(2-(trifluoromethyl)pyrimidin-4-yl)-1,3,4-oxadiazol-2-yl)pyrimidin-4-yl)piperidine-1-carboxamide

Intermediate C48.7 was synthesized from intermediate C48.6 using General Procedure 6.


Compound C48

Compound C48 was synthesized from intermediate C48.7 using General Procedure 7. 1H-NMR (400 MHz, CDCl3): δ 9.22 (dd, 1H), 8.46 (dd, 1H), 7.12 (m, 1H), 6.92 (m, 3H), 5.93 (br s, 2H), 4.28 (d, 2H), 2.93 (m, 3H), 2.48 (s, 3H), 2.02 (m, 2H), 1.88 (m, 2H). MS (EI) for C24H20F5N9O2. found: 562.2 (MH+). Analytical HPLC, ret. time=14.58 min, 99% purity.


Compound C49: 4-(2-Amino-6-methyl-5-{5-[2-(trifluoromethyl)pyrimidin-4-yl]-1,3,4-oxadiazol-2-yl}pyrimidin-4-yl)-N-[2-fluoro-6-(trifluoromethyl)phenyl]piperidine-1-carboxamide

Compound C49 was made in a manner similar to Compound C48: 1H-NMR (400 MHz, CDCl3): δ 9.20 (d, 1H), 8.46 (d, 1H), 7.44 (m, 1H), 7.32 (m, 2H), 6.08 (s, 1H), 5.41 (s, 2H), 4.17 (m, 2H), 2.96 (m, 3H), 2.50 (s, 3H), 2.03 (m, 2H), 1.91 (m, 2H). MS (EI) for C25H20F7N9O2. found: 612.1 (MH+). Analytical HPLC, ret. time=15.87 min, 99% purity.


Compound C50: 2,6-Difluorophenyl 4-(2-amino-6-methyl-5-{5-[2-(trifluoromethyl)pyrimidin-4-yl]-1,3,4-oxadiazol-2-yl}pyrimidin-4-yl)piperidine-1-carboxylate
C50.1: tert-Butyl 4-(6-methyl-2-(methylsulfonyl)-5-(5-(2-(trifluoromethyl)pyrimidin-4-yl)-1,3,4-oxadiazol-2-yl)pyrimidin-4-yl)piperidine-1-carboxylate

Intermediate C50.1 was made from intermediate C48.4 using General Procedure 6. MS (EI, Neg.) for C23H26F3N7O5S. found: 567.7 [(M-H)].


C50.2: tert-Butyl 4-(2-amino-6-methyl-5-(5-(2-(trifluoromethyl)pyrimidin-4-yl)-1,3,4-oxadiazol-2-yl)pyrimidin-4-yl)piperidine-1-carboxylate

Intermediate C50.2 was made from intermediate C50.1 using General Procedure 7. 1H-NMR (400 MHz, CDCl3): δ 9.19 (d, 1H), 8.44 (d, 1H), 5.29 (br. s, 2H), 4.20 (m, 2H), 2.83 (m, 1H), 2.69 (m, 2H), 2.47 (s, 3H), 1.90-1.77 (m, 4H), 1.47 (s, 9H). MS (EI) for C22H25F3N8O3. found: 507.2 (MH+).


C50.3: 4-Methyl-6-(piperidin-4-yl)-5-(5-(2-(trifluoromethyl)pyrimidin-4-yl)-1,3,4-oxadiazol-2-yl)pyrimidin-2-amine dihydrochloride salt

Intermediate C50.3 was made from the Boc deprotection of intermediate C50.2 using General Procedure 2, and obtained as a light yellow solid. 1H-NMR (400 MHz, DMSO-d6): δ 9.38 (d, 1H), 8.78 (br. s, 1H), 8.56 (d, 1H), 8.53 (br. s, 1H), 7.34 (br. s, 2H), 4.82 (br. s, 1H), 3.31 (d, 2H), 3.02 (m, 1H), 2.87 (m, 2H), 2.38 (s, 3H), 2.03-1.91 (m, 4H). MS (EI) for C17H17F3N8O. found: 407.2 (MH+).


Compound C50

Compound C50 was made from intermediate C50.3 and 2,6-difluorophenyl chloroformate (prepared using a general method according to the literature procedure as described in J. Med. Chem. 2006, 49, 4981) using a method analogous to the method that was used to synthesize Compound A119 from intermediate A116.3. 1H-NMR (400 MHz, CDCl3): δ 9.20 (d, 1H), 8.45 (d, 1H), 7.14 (m, 1H), 6.99-6.94 (m, 2), 5.71 (br s, 2H), 4.44 (d, 1H), 4.32 (d, 1H), 3.06 (t, 1H), 2.97 (m, 1H), 2.89 (t, 1H), 2.49 (s, 3H), 2.03 (m, 2H), 1.90 (t, 2H). MS (EI) for C24H19F5N8O3. found: 563.2 (MH+). Analytical HPLC, ret. time=14.56 min, 98% purity.


Compounds C51-C57 were made from intermediate C50.3 and the corresponding substituted phenyl chloroformates (either purchased from commercial sources, or prepared using a general method according to the literature procedure as described in. J. Med. Chem. 2006, 49, 4981) in a manner similar to Compound C50:


Compound C51: 2-Chlorophenyl 4-(2-amino-6-methyl-5-{5-[2-(trifluoromethyl)pyrimidin-4-yl]-1,3,4-oxadiazol-2-yl}pyrimidin-4-yl)piperidine-1-carboxylate


1H-NMR (400 MHz, CDCl3): δ 9.20 (d, 1H), 8.45 (d, 1H), 7.42 (d, 1H), 7.30-7.22 (m, 2H), 7.16 (t, 1H), 5.34 (s, 2H), 4.49 (d, 1H), 4.35 (d, 1H), 3.08-2.95 (m, 2H), 2.87 (t, 1H), 2.50 (s, 3H), 2.10-1.98 (m, 2H), 1.95-1.85 (m, 2H). MS (EI) for C24H20ClF3NO3. found: 561.2 (MH+). Analytical HPLC, ret. time=14.72 min, 99% purity.


Compound C52: 2-Fluorophenyl 4-(2-amino-6-methyl-5-{5-[2-(trifluoromethyl)pyrimidin-4-yl]-1,3,4-oxadiazol-2-yl}pyrimidin-4-yl)piperidine-1-carboxylate


1H-NMR (400 MHz, CDCl3): δ 9.20 (d, 1H), 8.45 (d, 1H), 7.21-7.10 (m, 4H), 5.37 (s, 2H), 4.44 (d, 1H), 4.34 (d, 1H), 3.06-2.94 (m, 2H), 2.87 (t, 1H), 2.49 (s, 3H), 2.07-1.95 (m, 2H), 1.90 (t, 2H). MS (EI) for C24H20F4N8O3. found: 545.2 (MH+). Analytical HPLC, ret. time=14.18 min, 98% purity.


Compound C53: 4-Fluorophenyl 4-(2-amino-6-methyl-5-{5-[2-(trifluoromethyl)pyrimidin-4-yl]-1,3,4-oxadiazol-2-yl}pyrimidin-4-yl)piperidine-1-carboxylate


1H-NMR (400 MHz, CDCl3): δ 9.20 (d, 1H), 8.45 (d, 1H), 7.10-7.02 (m, 4H), 5.52 (s, 2H), 4.37 (dd, 2H), 3.02-2.94 (m, 2H), 2.84 (t, 1H), 2.49 (s, 3H), 2.05-1.85 (m, 4H). MS (EI) for C24H20F4N8O3. found: 545.2 (MH+). Analytical HPLC, ret. time=14.28 min, 97% purity.


Compound C54: 2,5-Difluorophenyl 4-(2-amino-6-methyl-5-{5-[2-(trifluoromethyl)pyrimidin-4-yl]-1,3,4-oxadiazol-2-yl}pyrimidin-4-yl)piperidine-1-carboxylate


1H-NMR (400 MHz, CDCl3): 9.20 (d, 1H), 8.46 (d, 1H), 7.09 (m, 1H), 6.98 (m, 1H), 6.89 (m, 1H), 5.39 (s, 2H), 4.37 (dd, 2H), 3.06-2.95 (m, 2H), 2.88 (t, 1H), 2.50 (s, 3H), 2.08-1.98 (m, 2H), 1.91 (t, 2H). MS (EI) for C24H19F5N8O3. found: 563.2 (MH+). Analytical HPLC, ret. time=14.92 min, 99% purity.


Compound C55: 3-Fluorophenyl 4-(2-amino-6-methyl-5-{5-[2-(trifluoromethyl)pyrimidin-4-yl]-1,3,4-oxadiazol-2-yl}pyrimidin-4-yl)piperidine-1-carboxylate


1H-NMR (400 MHz, CDCl3): δ 9.20 (d, 1H), 8.46 (d, 1H), 7.32 (m, 1H), 6.95-6.89 (m, 3H), 5.46 (s, 2H), 4.37 (dd, 2H), 3.03-2.94 (m, 2H), 2.85 (t, 1H), 2.50 (s, 3H), 2.06-1.87 (m, 4H). MS (EI) for C24H20F4N8O3. found: 545.2 (MH+). Analytical HPLC, ret. time=14.54 min, 99% purity.


Compound C56: 2,4-Difluorophenyl 4-(2-amino-6-methyl-5-{5-[2-(trifluoromethyl)pyrimidin-4-yl]-1,3,4-oxadiazol-2-yl}pyrimidin-4-yl)piperidine-1-carboxylate


1H-NMR (400 MHz, CDCl3): δ 9.20 (d, 1H), 8.45 (d, 1H), 7.16 (m, 1H), 6.94-6.84 (m, 2H), 5.44 (s, 2H), 4.37 (dd, 2H), 3.06-2.93 (m, 2H), 2.89 (t, 1H), 2.50 (s, 3H), 2.07-1.97 (m, 2H), 1.90 (t, 2H). MS (EI) for C24H19F5N8O3. found: 563.2 (MH+). Analytical HPLC, ret. time=14.90 min, 99% purity.


Compound C57: 2-(methyloxy)phenyl 4-(2-amino-6-methyl-5-{5-[2-(trifluoromethyl)pyrimidin-4-yl]-1,3,4-oxadiazol-2-yl}pyrimidin-4-yl)piperidine-1-carboxylate


1H-NMR (400 MHz, CDCl3): δ 9.20 (d, 1H), 8.46 (d, 1H), 7.18 (t, 1H), 7.09 (d, 1H), 6.97-6.92 (m, 2H), 5.34 (s, 2H), 4.45 (d, 1H), 4.34 (d, 1H), 3.86 (s, 3H), 3.05-2.93 (m, 2H), 2.85 (m, 1H), 2.49 (s, 3H), 2.09-1.98 (m, 2H), 1.90-1.85 (m, 2H). MS (EI) for C25H23F3NO4. found: 557.2 (MH+). Analytical HPLC, ret. time=13.96 min, 98% purity.


Compound C58: N-(2,6-Difluorophenyl)-4-[6-methyl-2-(methylthio)-5-{5-[6-(trifluoromethyl)pyridin-2-yl]-1,3,4-oxadiazol-2-yl}pyrimidin-4-yl]piperidine-1-carboxamide
C58.1: 6-(Trifluoromethyl)picolinohydrazide

Intermediate C58.1 was made from methyl 6-(trifluoromethyl)picolinate using a method analogous to the method that was used to synthesize intermediate C40.1 from methyl 2-(trifluoromethyl)pyrimidine-4-carboxylate.


C58.2: tert-Butyl 4-(6-methyl-2-(methylthio)-5-(2-(6-(trifluoromethyl)picolinoyl)hydrazinecarbonyl)pyrimidin-4-yl)piperidine-1-carboxylate

Intermediate C58.2 was made from intermediate C48.2 and intermediate C58.1 using a method analogous to the method that was used to synthesize intermediate C40.2 from intermediate A121.1 and intermediate C40.1.


C58.3: tert-Butyl 4-(6-methyl-2-(methylthio)-5-(5-(6-(trifluoromethyl)pyridin-2-yl)-1,3,4-oxadiazol-2-yl)pyrimidin-4-yl)piperidine-1-carboxylate

Intermediate C58.3 was made from intermediate C58.2 using a method analogous to the method used to synthesize intermediate C40.3 from intermediate C40.2.


C58.4: 2-(4-Methyl-2-(methylthio)-6-(piperidin-4-yl)pyrimidin-5-yl)-5-(6-(trifluoromethyl)pyridin-2-yl)-1,3,4-oxadiazole hydrochloride salt

Intermediate C58.4 was made from the Boc deprotection of intermediate C58.3 using General Procedure 2.


Compound C58

Compound C58 was made from intermediate C58.4 and 2,6-difluorophenyl isocyanate using General Procedure 5. 1H-NMR (400 MHz, CDCl3): δ 8.54 (d, 1H), 8.16 (t, 1H), 7.90 (d, 1H), 7.11 (m, 1H), 6.93 (t, 2H), 5.88 (s, 1H), 4.22 (d, 1H), 3.06-2.94 (m, 3H), 2.64 (s, 3H), 2.60 (s, 3H), 2.16-2.06 (m, 2H), 1.95 (d, 2H). MS (EI) for C26H22F5N7O2S. found: 591.9 (MH+). Analytical HPLC, ret. time=20.76 min, 99% purity.


Compound C59: 4-(2-Amino-6-methyl-5-{5-[6-(trifluoromethyl)pyridin-2-yl]-1,3,4-oxadiazol-2-yl}pyrimidin-4-yl)-N-(2,6-difluorophenyl)piperidine-1-carboxamide
C59.1: N-(2,6-Difluorophenyl)-4-(6-methyl-2-(methylsulfonyl)-5-(5-(6-(trifluoromethyl)pyridin-2-yl)-1,3,4-oxadiazol-2-yl)pyrimidin-4-yl)piperidine-1-carboxamide

Intermediate C59.1 was synthesized from Compound C58 using General Procedure 6.


Compound C59

Intermediate C59.1 (25 mg, 0.04 mmol) was dissolved in 4 mL of 7 N ammonium in MeOH solution and the resulting mixture was stirred at 30° C. for 10 min. After removal of solvent in vacuo, the crude mixture was purified on prep HPLC to give Compound C59. 1H-NMR (400 MHz, CDCl3): δ 8.46 (d, 1H), 8.07 (t, 1H), 7.81 (d, 1H), 7.03 (m, 1H), 6.86 (t, 2H), 5.80 (s, 1H), 5.27 (s, 2H), 4.13 (d, 2H), 2.91-2.85 (m, 3H), 2.42 (s, 3H), 2.00-1.90 (m 2H), 1.85 (d, 2H). MS (EI) for C25H21F5N8O2. found: 560.9 (MH+). Analytical HPLC, ret. time=15.37 min, 98% purity.


Compound C60: N-(2,6-Difluorophenyl)-4-[6-methyl-2-(methyloxy)-5-{5-[6-(trifluoromethyl)pyridin-2-yl]-1,3,4-oxadiazol-2-yl}pyrimidin-4-yl]piperidine-1-carboxamide

Compound C60 was recovered as a side product from the reaction that generated Compound C59. 1H-NMR (400 MHz, CDCl3): δ 8.48 (d, 2H), 8.09 (t, 1H), 7.83 (d, 1H), 7.04 (m, 1H), 6.86 (t, 2H), 5.80 (s, 1H), 4.15 (d, 2H), 4.04 (s, 3H), 2.99-2.88 (m, 3H), 2.53 (s, 3H), 2.10-1.99 (m, 2H), 1.89 (d, 2H). MS (EI) for C26H22F5N7O3. found: 575.9 (MH+). Analytical HPLC, ret. time=18.80 min, 99% purity.


Compound C61: N-(2,6-Difluorophenyl)-4-[6-methyl-2-(methyloxy)-5-{5-[2-(trifluoromethyl)pyrimidin-4-yl]-1,3,4-oxadiazol-2-yl}pyrimidin-4-yl]piperidine-1-carboxamide

Compound C61 was made in a manner similar to Compound C60: 1H-NMR (400 MHz, CDCl3): δ 9.21 (d, 1H), 8.47 (d, 1H), 7.11 (m, 1H), 6.93 (m, 2H), 5.90 (br s, 1H), 4.23 (m, 2H), 4.11 (s, 3H) 3.00 (m, 3H), 2.60 (s, 3H), 2.12 (m, 2H), 1.94 (m, 2H). MS (EI) for C25H21F5N8O3. found: 577.2 (MH+). Analytical HPLC, ret. time=17.84 min, 99% purity.


Compound C62: 4-{1-[(2,6-difluorophenyl)acetyl]piperidin-4-yl}-2-methyl-5-{5-[2-(trifluoromethyl)pyrimidin-4-yl]-1,3,4-oxadiazol-2-yl}pyrimidine
C62.1: Methyl 2-methyl-4-(piperidin-4-yl)pyrimidine-5-carboxylate

Intermediate C62.1 was made from the Boc deprotection of Common Intermediate CI1 using General Procedure 2.


C62.2: Methyl 4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-yl)-2-methylpyrimidine-5-carboxylate

Intermediate C62.2 was synthesized from intermediate C62.1 and 2,6-difluorophenylacetic acid using General Procedure 4.


C62.3: 4-(1-(2-(2,6-Difluorophenyl)acetyl)piperidin-4-yl)-2-methylpyrimidine-5-carboxylic acid

Intermediate C62.3 was made from intermediate C62.2 using General Procedure 1.


C62.4: N-(4-(1-(2-(2,6-Difluorophenyl)acetyl)piperidin-4-yl)-2-methylpyrimidine-5-carbonyl)-2-(trifluoromethyl)pyrimidine-4-carbohydrazide

Intermediate C62.4 was made from intermediate C62.3 and intermediate C40.1 using a method analogous to the method that was used to synthesize intermediate C40.2 from intermediate A121.1 and intermediate C40.1.


Compound C62

Compound C62 was synthesized from intermediate C62.4 using a method analogous to the method used to synthesize intermediate C40.3 from intermediate C40.2. 1H-NMR (400 MHz, CDCl3): δ 9.31 (s, 1H), 9.21 (d, 1H), 8.45 (d, 1H), 7.24 (m, 1H), 6.91 (t, 2H), 4.82 (d, 1H), 4.18 (d, 1H), 4.00 (tt, 1H), 3.79 (s, 2H), 3.37 (td, 1H), 2.84 (s, 3H), 2.83 (m, 1H), 2.03 (m, 4H). MS (EI) for C25H20F5N7O2. found 546.1 (MH+). Analytical HPLC, ret. time=18.784 min, 99% purity.


Compound C63: N-(2,6-difluorophenyl)-4-(2,6-dimethyl-5-{3-[3-(trifluoromethyl)phenyl]-1,2,4-oxadiazol-5-yl}pyrimidin-4-yl)piperidine-1-carboxamide
C63.1: tert-Butyl 4-(2,6-dimethyl-5-((3-(trifluoromethyl)benzimidamidooxy)carbonyl)pyrimidin-4-yl)piperidine-1-carboxylate

To a mixture of 3-(trifluoromethyl)benzonitrile (1.00 g, 5.84 mmol) and hydroxylamine hydrochloride (2.44 g, 35 mmol) in anhydrous ethanol (8.3 mL) was added triethylamine (4.14 g, 41 mmol). The resulting mixture was heated at 80° C. with stirring in a sealed tube for 20 min. After cooling to RT, the mixture was diluted with EtOAc, washed with water (3×) and brine, dried over MgSO4, and concentrated in vacuo to give (Z)—N′-hydroxy-3-(trifluoromethyl)benzimidamide as an off-white solid (1.18 g): 1H-NMR (400 MHz, DMSO-d3): δ 9.86 (s, 1H), 7.98 (s, 1H), 7.96 (d, 1H), 7.72 (d, 1H), 7.60 (t, 1H), 6.01 (s, 2H). MS (EI) for C8H7F3N2O. found: 205.1 (MH+). A mixture of intermediate A121.1 (300 mg, 0.89 mmol), HATU (408 mg, 1.07 mmol), DIEA (230 mg, 1.79 mmol) and DCM (7 mL) was heated at 35° C. with stirring for 40 min. To the mixture was added (Z)—N′-hydroxy-3-(trifluoromethyl)benzimidamide (237 mg, 1.16 mmol) and the resulting mixture was heated at 35° C. for 30 min. After removal of DCM in vacuo, the resulting mixture was partitioned between EtOAc and water. The organic phase was separated, washed with water (3×) and brine, dried over MgSO4 and concentrated in vacuo to afford intermediate C63.1 (515 mg) as a light orange solid: MS (EI) for C25H30F3N5O4. found: 522.2 (MH+). The crude product was used directly in the next reaction without further purification.


C63.2: tert-Butyl 4-(2,6-dimethyl-5-(3-(3-(trifluoromethyl)phenyl)-1,2,4-oxadiazol-5-yl)pyrimidin-4-yl)piperidine-1-carboxylate

To crude intermediate C63.1 obtained above was added glacial acetic acid (10 ml). The mixture was heated at 95° C. with stirring for 2.5 days. The resulting crude reaction solution was used as is in the next reaction.


C63.3: 5-(2,4-Dimethyl-6-(piperidin-4-yl)pyrimidin-5-yl)-3-(3-(trifluoromethyl)phenyl)-1,2,4-oxadiazole TFA salt

TFA (2 mL) was added to the crude reaction solution of intermediate C63.2 generated above. The resulting mixture was heated at 80-90° C. for an additional 2 h. The crude mixture was cooled to RT, diluted with water, and washed with t-butylethyl ether. The aqueous phase was basified with 0.5 N NaOH, and then extracted with EtOAc (3×). The organic phase was washed with water and brine, dried over MgSO4 and concentrated to give intermediate C63.3 (46 mg). MS (EI) for C20H20F3N5O. found: 404.2 (MH+). The compound was used for the next step without further purification.


Compound C63

Compound C63 was made from intermediate C63.3 and 2,6-difluorophenyl isocyanate using General Procedure 5. 1H-NMR (400 MHz, CDCl3): δ 8.44 (s, 1H), 8.36 (d, 1H), 7.83 (d, 1H), 7.70 (t, 1H), 7.10 (m, 1H), 6.93 (m, 2H), 5.97 (s, 1H), 4.22 (d, 2H), 2.95 (m, 2H), 2.89 (m, 1H), 2.77 (s, 3H), 2.56 (s, 3H), 2.10 (m, 2H), 1.88 (d, 2H). MS (EI) for C27H23F5N6O2. found: 559.2 (MH+). Analytical HPLC, ret. time=21.5 min, 99% purity.


Compound C64: 4-(2,6-Dimethyl-5-{3-[3-(trifluoromethyl)phenyl]-1,2,4-oxadiazol-5-yl}pyrimidin-4-yl)-N-[2-fluoro-6-(trifluoromethyl)phenyl]piperidine-1-carboxamide

Compound C64 was made in a manner similar to Compound C63: 1H-NMR (400 MHz, DMSO-d6): δ 8.41 (d, 1H), 8.33 (s, 1H), 8.18 (s, 1H), 8.04 (d, 1H), 7.89 (t, 1H), 7.60-7.49 (m, 3H), 4.12 (d, 2H), 3.35 (s, 3H), 3.03 (m, 1H), 2.82 (t, 2H), 2.67 (s, 3H), 1.83-1.72 (m, 2H). MS (EI) for C28H23F7N6O2. found: 609.1 (MH+). Analytical HPLC, ret. time=4.57 min over a 6 min-run, 99% purity.


Compound C65: 4-{1-[(2,6-Difluorophenyl)carbonyl]piperidin-4-yl}-2,6-dimethyl-5-{3-[3-(trifluoromethyl)phenyl]-1,2,4-oxadiazol-5-yl}pyrimidine

Compound C65 was synthesized from intermediate C63.3 and 2,6-difluorobenzoic acid using General Procedure 4. 1H-NMR (400 MHz, DMSO-d6): δ 8.42 (d, 1H), 8.34 (s, 1H), 8.05 (d, 1H), 7.90 (t, 1H), 7.55 (m, 1H), 7.26-7.18 (m, 2H), 4.20 (d, 1H), 3.43 (m, 1H), 3.38 (s, 3H), 3.16 (m, 2H), 2.86 (m, 1H), 2.69 (s, 3H), 1.92 (m, 1H), 1.83-1.76 (m, 3H). MS (EI) for C27H22F5N5O2. found: 544.1 (MH+). Analytical HPLC, ret. time=23.6 min, 98% purity.


Compound C66: 5-[5-(3-Chlorophenyl)-1,3-oxazol-2-yl]-4-{1-[(2,6-difluorophenyl)acetyl]piperidin-4-yl}-2,6-dimethylpyrimidine
C66.1: tert-butyl 4-(5-(2-(3-chlorophenyl)-2-oxoethylcarbamoyl)-2,6-dimethylpyrimidin-4-yl)piperidine-1-carboxylate

Intermediate C66.1 was made from intermediate A121.1 and 2-amino-1-(3-chlorophenyl)ethanone.HCl using General Procedure 3.


C66.2: N-(2-(3-Chlorophenyl)-2-oxoethyl)-2,4-dimethyl-6-(piperidin-4-yl)pyrimidine-5-carboxamide hydrochloride salt

Intermediate C66.2 was made by the Boc-deprotection of intermediate C66.1 using General Procedure 2.


C66.3: N-(2-(3-Chlorophenyl)-2-oxoethyl)-4-(1-(2-(2,6-difluorophenyl)acetyl)piperidin-4-yl)-2,6-dimethylpyrimidine-5-carboxamide

Intermediate C66.3 was made from intermediate C66.2 and 2,6-difluorophenylacetic acid using General Procedure 4.


Compound C66

A mixture of C66.3 (14 mg, 0.026 mmol) and POCl3 (0.5 mL) was stirred for 6.5 h at 95° C. After evaporating POCl3 in vacuo, the resulting residue was dissolved in EtOAc (2 mL) and treated with aqueous saturated NaHCO3 (2 mL). The aqueous layer was further extracted with EtOAc (2×2 mL). The combined organic layers were concentrated and purified by silica gel column chromatography (Hexane/EtOAc=4:3→1:1) to give Compound C66 (4.3 mg, 32%) as a clear oil. 1H-NMR (400 MHz, CDCl3): δ 7.66 (s, 1H), 7.57 (s, 1H), 7.56 (d, 1H), 7.41 (t, 1H), 7.36 (m, 1H), 7.22 (m, 1H), 6.89 (t, 2H), 4.71 (d, 1H), 4.09 (d, 1H), 3.74 (d, 2H), 3.13 (t, 1H), 3.04 (tt, 1H), 2.75 (s, 3H), 2.60 (td, 1H), 2.53 (s, 3H), 2.06 (qd, 1H), 1.89 (m, 3H). MS (EI) for C28H25ClF2N4O2. found 523.2 (MH+). Analytical HPLC, ret. time=22.116 min, 96% purity.


Compound C67: 4-{5-[5-(3-Chlorophenyl)-1,3-oxazol-2-yl]-2,6-dimethylpyrimidin-4-yl}-N-(2,6-difluorophenyl)piperidine-1-carboxamide
C67.1: N-(2-(3-Chlorophenyl)-2-oxoethyl)-4-(1-(2,6-difluorophenylcarbamoyl)piperidin-4-yl)-2,6-dimethylpyrimidine-5-carboxamide

Intermediate C67.1 was made from intermediate C67.2 and 2,6-difluorophenyl isocyanate using General Procedure 5.


Compound C67

Compound C67 was made from intermediate C67.1 using a method analogous to the cyclization of intermediate C66.3 to make Compound C66. 1H-NMR (400 MHz, CDCl3): δ 7.66 (t, 1H), 7.58 (s, 1H), 7.56 (m, 1H), 7.41 (t, 1H), 7.36 (m, 1H), 7.10 (m, 1H), 6.93 (t, 2H), 5.86 (s, 1H), 4.21 (d, 2H), 3.01 (tt, 1H), 2.95 (td, 2H), 2.75 (s, 3H), 2.53 (s, 3H), 2.08 (qd, 2H), 1.86 (m, 2H). MS (EI) for C27H24ClF2N5O2. found 524.1 (MH+). Analytical HPLC, ret. time=19.588 min, 99% purity.


Compound C68: N-(2,6-Difluorophenyl)-4-(2,6-dimethyl-5-{5-[2-(trifluoromethyl)pyrimidin-4-yl]-1,3-oxazol-2-yl}pyrimidin-4-yl)piperidine-1-carboxamide
C68.1: 2-Azido-1-(2-(trifluoromethyl)pyrimidin-4-yl)ethanone

2-Bromo-1-(2-(trifluoromethyl)pyrimidin-4-yl)ethanone was prepared from 4-chloro-2-(trifluoromethyl)pyrimidine by the same method used in the synthesis of 2-bromo-1-(2-chloropyrimidin-4-yl)ethanone (Bioorganic Med. Chem. Lett. 2011, 21, 3818-3822). To a stirred solution of 2-bromo-1-(2-(trifluoromethyl)pyrimidin-4-yl)ethanone (270 mg, 1.00 mmol) in THF (4 mL) at 0° C. were added sodium azide (98.0 mg, 1.50 mmol) and H2O (0.2 mL) in sequence and the mixture was stirred for 20 min at 0° C. The resulting crude reaction solution was used as is in the next reaction.


C68.2: 2-Azido-1-(2-(trifluoromethyl)pyrimidin-4-yl)ethanol

To the crude reaction solution of intermediate C68.1 was added NaBH4 (57 mg, 1.5 mmol). After stirring for 20 min at room temperature, aqueous saturated NH4Cl (4 mL) was added and the resulting solution was extracted with EtOAc (3×2 mL). The combined organic layers were concentrated and purified by silica gel column chromatography (Hexane/EtOAc=5:2) to give intermediate C68.2 (116 mg, 50%).


C68.3: 2-Amino-1-(2-(trifluoromethyl)pyrimidin-4-yl)ethanol

A mixture of intermediate C68.2 (116 mg, 0.498 mmol), palladium on activated carbon (53 mg, 10 wt. %, 0.050 mmol) and MeOH (5 mL) was stirred for 1 h at room temperature under hydrogen atmosphere using a balloon. The mixture was filtered through Celite and the filtrate was concentrated. The residue was dissolved in EtOAc (3 mL), and the resulting solution was filtered and concentrated to give a crude intermediate C68.3. MS (EI) for C7H8F3N3O. found 207.1 (MH+).


C68.4: Methyl/Ethyl 2,4-dimethyl-6-(piperidin-4-yl)pyrimidine-5-carboxylate hydrochloride salt

Intermediate C68.4 was made from the Boc-deprotection of Common Intermediate CI2 using General Procedure 2.


C68.5: Methyl/Ethyl 4-(1-(2,6-difluorophenylcarbamoyl)piperidin-4-yl)-2,6-dimethylpyrimidine-5-carboxylate

Intermediate C68.5 was made from intermediate C68.4 and 2,6-difluorophenyl isocyanate using General Procedure 5.


C68.6: 4-(1-(2,6-Difluorophenylcarbamoyl)piperidin-4-yl)-2,6-dimethylpyrimidine-5-carboxylic acid

Intermediate C68.6 was made from the ester hydrolysis of intermediate C68.5 using General Procedure 1.


C68.7: 4-(1-(2,6-Difluorophenylcarbamoyl)piperidin-4-yl)-N-(2-hydroxy-2-(2-(trifluoromethyl)pyrimidin-4-yl)ethyl)-2,6-dimethylpyrimidine-5-carboxamide

Intermediate C68.7 was made from the coupling of intermediate C68.6 and intermediate C68.3 using General Procedure 3.


C68.8: 4-(1-(2,6-Difluorophenylcarbamoyl)piperidin-4-yl)-2,6-dimethyl-N-(2-oxo-2-(2-(trifluoromethyl)pyrimidin-4-yl)ethyl)pyrimidine-5-carboxamide

Intermediate C68.8 was made from intermediate C68.7 using a method analogous to the oxidation of intermediate B46.1 to intermediate B46.2.


Compound C68

Compound C68 was made from intermediate C68.8 using a method analogous to the cyclization of intermediate C66.3 to form Compound C66. 1H-NMR (400 MHz, CDCl3): δ 8.99 (d, 1H), 8.24 (s, 1H), 7.72 (d, 1H), 7.12 (m, 1H), 6.93 (t, 2H), 5.87 (s, 1H), 4.21 (d, 2H), 2.97 (m, 3H), 2.77 (s, 3H), 2.53 (s, 3H), 2.09 (qd, 2H), 1.86 (m, 2H). MS (EI) for C26H22F5N7O2. found 560.2 (MH+). Analytical HPLC, ret. time=17.628 min, 99% purity.


Compound C69: 4-(2-amino-6-methyl-5-{5-[2-(trifluoromethyl)pyrimidin-4-yl]-1,3-oxazol-2-yl}pyrimidin-4-yl)-N-(2,6-difluorophenyl)piperidine-1-carboxamide
C69.1: tert-Butyl 4-(5-(2-hydroxy-2-(2-(trifluoromethyl)pyrimidin-4-yl)ethylcarbamoyl)-6-methyl-2-(methylthio)pyrimidin-4-yl)piperidine-1-carboxylate

Intermediate C69.1 was made by coupling intermediate C48.2 with C68.3 using General Procedure 3.


C69.2: N-(2-Hydroxy-2-(2-(trifluoromethyl)pyrimidin-4-yl)ethyl)-4-methyl-2-(methylthio)-6-(piperidin-4-yl)pyrimidine-5-carboxamide TFA salt

Intermediate C69.2 was made from the Boc deprotection of intermediate C69.1 using General Procedure 2.


C69.3: 4-(1-(2,6-Difluorophenylcarbamoyl)piperidin-4-yl)-N-(2-hydroxy-2-(2-(trifluoromethyl)pyrimidin-4-yl)ethyl)-6-methyl-2-(methylthio)pyrimidine-5-carboxamide

Intermediate C69.3 was made from intermediate C69.2 and 2,6-difluorophenyl isocyanate using General Procedure 5.


C69.4: 4-(1-(2,6-Difluorophenylcarbamoyl)piperidin-4-yl)-6-methyl-2-(methylthio)-N-(2-oxo-2-(2-(trifluoromethyl)pyrimidin-4-yl)ethyl)pyrimidine-5-carboxamide

Intermediate C69.4 was made from intermediate C69.3 using a method analogous to the oxidation of intermediate B46.1 to intermediate B46.2.


C69.5: N-(2,6-Difluorophenyl)-4-(6-methyl-2-(methylthio)-5-(5-(2-(trifluoromethyl)pyrimidin-4-yl)oxazol-2-yl)pyrimidin-4-yl)piperidine-1-carboxamide

Intermediate C69.5 was made from intermediate C69.4 using a method analogous to the cyclization of intermediate C66.3 to form Compound C66.


C69.6: N-(2,6-Difluorophenyl)-4-(6-methyl-2-(methylsulfonyl)-5-(5-(2-(trifluoromethyl)pyrimidin-4-yl)oxazol-2-yl)pyrimidin-4-yl)piperidine-1-carboxamide

Intermediate C69.6 was made from intermediate C69.5 using General Procedure 6.


Compound C69

To a stirred solution of intermediate C69.6 (4.6 mg, 0.0074 mmol) in 2-propanol (1.5 mL) at −78° C. was bubbled ammonia gas for 5 min. The mixture was sealed and stirred for 1 h at room temperature. The resulting solution was concentrated in vacuo and purified by preparative HPLC to give Compound C69 (3.0 mg, 72%) as a white solid after lyophilization. 1H-NMR (400 MHz, CDCl3, DMSO-d6): δ 9.00 (d, 1H), 8.21 (s, 1H), 7.80 (d, 1H), 7.59 (s, 1H), 7.14 (m, 1H), 6.92 (t, 2H), 6.27 (br s, 2H), 4.30 (d, 2H), 2.85 (m, 3H), 2.42 (s, 3H), 1.96 (qd, 2H), 1.82 (m, 2H). MS (EI) for C25H21F5N8O2. found 561.1 (MH+). Analytical HPLC, ret. time=11.360 min, 99% purity.


Compound C70: 4-(2-Amino-6-methyl-5-{2-[2-(trifluoromethyl)pyrimidin-4-yl]-1,3-oxazol-5-yl}pyrimidin-4-yl)-N-(2,6-difluorophenyl)piperidine-1-carboxamide
C70.1: tert-Butyl 4-(2-acetyl-3-oxobut-1-enyl)piperidine-1-carboxylate

To a mixture of acetylacetone (2 g, 20 mmol) and N-boc-4-piperidinecarboxaldehyde (4.3 g, 20 mmol) in isopropanol (30 mL) were added acetic acid (60 mg) and piperidine (60 mg). The mixture was stirred at rt for 48 h. Isopropanol was removed. The residue was dissolved in EtOAc, washed with saturated NaHCO3, brine, and dried over anhydrous Na2SO4. Removal of EtOAc gave the crude intermediate C70.1. It was used in the next step without further purification.


C70.2: tert-Butyl 4-(5-acetyl-6-methyl-2-(methylthio)pyrimidin-4-yl)piperidine-1-carboxylate

To a solution of intermediate C70.1 (460 mg, 1.56 mmol) in DMF (3 mL) were added S-methylisothiourea hemisulfate (260 mg, 1.87 mmol) and NaHCO3 (524 mg, 6.2 mmol). The resulting mixture was stirred at 70° C. for 4 h. The reaction mixture was cooled to rt, extracted with EtOAc, and dried over anhydrous Na2SO4. EtOAc was removed, and the crude dihydropyrimidine product was dissolved in DCE (10 mL). To this solution was added MnO2 (1.1 g, 12.5 mmol). The mixture was stirred at 85° C. for 30 min. It was then cooled to rt, filtered through Celite, and concentrated. Purification by flash column chromatography gave intermediate C70.2.


C70.3: tert-Butyl 4-(5-(2-bromoacetyl)-6-methyl-2-(methylthio)pyrimidin-4-yl)piperidine-1-carboxylate

To a stirred solution of C70.2 (365 mg, 1.00 mmol) in THF (4 mL) at 0° C. was added LiHMDS (1.5 mL, 1M in THF, 1.5 mmol). After stirring for 15 min at 0° C., chlorotrimethylsilane (0.19 mL, 1.5 mmol) was added. After stirring for 3 h at 0° C., aqueous saturated NaHCO3 (5 mL) was added and the resulting solution was extracted with EtOAc (3×3 mL). The combined organic layers were dried over MgSO4 and concentrated. To a stirred solution of the residue in THF (4 mL) at 0° C. were added NaHCO3 (126 mg, 1.50 mmol) and NBS (106 mg, 0.596 mmol) in sequence. After stirring for 1 h at room temperature, aqueous saturated NaHCO3 (5 mL) was added and the resulting solution was extracted with EtOAc (3×3 mL). The combined organic layers were concentrated and purified by silica gel column chromatography (Hexane/EtOAc=6:1→4:1→5:2) to give intermediate C70.3 (240 mg, 54%) as a pale brown oil. MS (EI) for C18H26BrN3O3S. found 446.1 (MH+).


C70.4: tert-Butyl 4-(5-(2-azidoacetyl)-6-methyl-2-(methylthio)pyrimidin-4-yl)piperidine-1-carboxylate

A mixture of intermediate C70.3 (200 mg, 0.451 mmol), sodium azide (58.6 mg, 0.902 mmol) and acetone (4 mL) was stirred for 3.5 h at room temperature. Aqueous saturated NH4Cl (3 mL) was added and the resulting solution was extracted with EtOAc (2×3 mL). The combined organic layers were concentrated and purified by silica gel column chromatography (Hexane/EtOAc=3:1) to give intermediate C70.4 (157 mg, 86%) as a pale brown solid. MS (EI) for C18H26N6O3S. found 407.2 (MH+).


C70.5: tert-Butyl 4-(5-(2-aminoacetyl)-6-methyl-2-(methylthio)pyrimidin-4-yl)piperidine-1-carboxylate

Intermediate C70.5 was made from intermediate C70.4 in EtOAc using a method analogous to the conversion of intermediate C68.2 to intermediate C68.3.


C70.6: tert-Butyl 4-(6-methyl-2-(methylthio)-5-(2-(2-(trifluoromethyl)pyrimidine-4-carboxamido)acetyl)pyrimidin-4-yl)piperidine-1-carboxylate

Intermediate C70.6 was made from intermediate C70.5 and 2-(trifluoromethyl)pyrimidine-4-carboxylic acid using standard amide coupling techniques analogous to those used in General Procedure 3.


C70.7: N-(2-(4-Methyl-2-(methylthio)-6-(piperidin-4-yl)pyrimidin-5-yl)-2-oxoethyl)-2-(trifluoromethyl)pyrimidine-4-carboxamide TFA salt

Intermediate C70.7 was made from the Boc deprotection of intermediate C70.6 using General Procedure 2.


C70.8: N-(2-(4-(1-(2,6-Difluorophenylcarbamoyl)piperidin-4-yl)-6-methyl-2-(methylthi)pyrimidin-5-yl)-2-oxoethyl)-2-(trifluoromethyl)pyrimidine-4-carboxamide

Intermediate C70.8 was made from intermediate C70.7 and 2,6-difluorophenyl isocyanate using General Procedure 5.


C70.9: N-(2,6-Difluorophenyl)-4-(6-methyl-2-(methylthio)-5-(2-(2-(trifluoromethyl)pyrimidin-4-yl)oxazol-5-yl)pyrimidin-4-yl)piperidine-1-carboxamide

Intermediate C70.9 was made from intermediate C70.8 using a method analogous to the cyclization of intermediate C66.3 to form Compound C66.


C70.10: N-(2,6-Difluorophenyl)-4-(6-methyl-2-(methylsulfonyl)-5-(2-(2-(trifluoromethyl)pyrimidin-4-yl)oxazol-5-yl)pyrimidin-4-yl)piperidine-1-carboxamide

Intermediate C70.10 was made from intermediate C70.9 using General Procedure 6.


Compound C70

Compound C70 was made from intermediate C70.10 using a method analogous to that used to convert intermediate C69.6 to Compound C69. 1H-NMR (400 MHz, CDCl3): δ 9.09 (d, 1H), 8.27 (d, 1H), 7.38 (s, 1H), 7.11 (m, 1H), 6.93 (t, 2H), 5.87 (s, 1H), 5.43 (br s, 2H), 4.20 (d, 2H), 2.89 (td, 2H), 2.71 (tt, 1H), 2.36 (s, 3H), 2.02 (qd, 2H), 1.84 (m, 2H). MS (EI) for C25H21F5NO2. found 561.1 (MH+). Analytical HPLC, ret. time=10.088 min, 95% purity.


Compound C71: 4-(2-Amino-6-methyl-5-{5-[2-(trifluoromethyl)pyrimidin-4-yl]-1,3,4-oxadiazol-2-yl}pyrimidin-4-yl)-N-(2-chlorophenyl)piperidine-1-carboxamide

Compound C71 was made in three steps from intermediate C48.5 in the same manner that Compound C48 was made in three steps from intermediate C48.5, substituting 2-chlorophenyl isocyanate for 2,6-difluorophenyl isocyanate in the first step. 1H-NMR (400 MHz, CDCl3): δ 9.20 (d, 1H), 8.45 (d, 1H), 8.21 (dd, 1H), 7.34 (dd, 1H), 7.25 (m, 1H), 7.07 (s, 1H), 6.95 (dt, 1H), 5.34 (s, 2H), 4.22 (d, 2H), 3.01-2.93 (m, 3H), 2.50 (s, 3H), 2.06-1.91 (m, 4H). MS (EI) for C24H21ClF3N9O2. found: 560.2 (MH+). Analytical HPLC, ret. time=16.54 min, 98% purity.


Compound D16: N-(2,6-Difluorophenyl)-4-[5-(1-hydroxy-1-methyl-2-{[6-(trifluoromethyl)pyridin-2-yl]amino}ethyl)-2-methylpyrimidin-4-yl]piperidine-1-carboxamide
D16.1: tert-Butyl 4-(5-(2-hydroxybut-3-en-2-yl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate

To a 0° C. solution of vinyl magnesium chloride in THF (1 mL, 1.6 M in THF) was added dropwise a solution of intermediate B36.1 (346 mg, 1.1 mmol) in PhMe (2 mL). The reaction mixture was stirred at 0° C. for 10 min, and then was quenched by slow addition of ice-water. The mixture was extracted with EtOAc, washed with brine, and dried over anhydrous Na2SO4. After removal of the solvents, the residue was purified by flash column chromatography to give intermediate D16.1 (180 mg, 48%).


D16.2: tert-Butyl 4-(5-(2-hydroxy-1-oxopropan-2-yl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate

Ozone was bubbled through a −78° C. solution of intermediate D16.1 (180 mg, 0.57 mmol) in DCM/MeOH (5 mL/11 mL) until the blue color persisted. Nitrogen was then bubbled through the mixture to remove excess ozone. To this solution was added dimethylsulfide (160 mg, 2.5 mmol). The mixture was allowed to warm to rt gradually. Removal of the solvents gave the crude aldehyde, which was used in the next step without further purification.


D16.3: tert-Butyl 4-(5-(2-hydroxy-1-(6-(trifluoromethyl)pyridin-2-ylamino)propan-2-yl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate

Crude intermediate D16.2 (140 mg, 0.4 mmol) was dissolved in AcOH (0.8 mL). The solution was stirred for 1 h at rt. Then NaBH4 (10 mg) was added. The stirring was continued for 1 h. EtOAc was added. The organic phase was washed with saturated NaHCO3, brine, and dried over anhydrous Na2SO4. After removal of the solvents, the residue was purified by flash column chromatography to give intermediate D16.3 (118 mg, 59%).


D16.4: 2-(2-Methyl-4-(piperidin-4-yl)pyrimidin-5-yl)-1-(6-(trifluoromethyl)pyridin-2-ylamino)propan-2-ol hydrochloride salt

Intermediate D16.4 was made from the Boc deprotection of intermediate D16.3 using General Procedure 2.


Compound D16

Compound D16 was made from intermediate D16.4 and 2,6-difluorophenyl isocyanate using General Procedure 5. 1H NMR (400 MHz, DMSO-d6) δ 8.62 (s, 1H), 8.22 (s, 1H), 7.51 (t, 1H), 7.24 (m, 1H), 7.06 (m, 3H), 6.86 (d, 1H), 6.81 (d, 1H), 5.71 (s, 1H), 4.41 (m, 2H), 3.55 (m, 3H), 2.85 (m, 2H), 2.51 (s, 3H), 1.70 (m, 4H). MS (EI) for C26H27F5N6O2. found: 551.2 (MH+). Analytical HPLC, ret. time=11.08 min, 98% purity.


Compound D17: N-(2,6-Difluorophenyl)-4-[5-(1-hydroxy-1-methyl-2-{[2-(trifluoromethyl)pyrimidin-4-yl]amino}ethyl)-2-methylpyrimidin-4-yl]piperidine-1-carboxamide
D17.1: tert-Butyl 4-(2-methyl-5-(2-methyloxiran-2-yl)pyrimidin-4-yl)piperidine-1-carboxylate

To a mixture of Me3SI (300 mg, 1.5 mmol) in THF (4 mL) was added tBuOK (2 mL, 1.0 M in THF). The resulting mixture was stirred at room temperature for 30 min and B1.1 (320 mg, 1 mmol) was added. Stirring was continued at room temperature for 2 h and then the reaction mixture was diluted with aq. sat. NaHCO3. The mixture was extracted with EtOAc and the organic mixture was dried over sodium sulfate, filtered, and concentrated. The crude product was used as is in the next step.


D17.2: tert-Butyl 4-(5-(1-amino-2-hydroxypropan-2-yl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate

Intermediate D17.1 (668 mg, 2.0 mmol) and ammonium hydroxide (28%, 7 mL) were dissolved in 1,4-dioxane (7 mL). The mixture was warmed to 60° C. with stirring in a sealed tube for 72 h. After the mixture was cooled to RT, EtOAc was added to extract the product. The organic layer was washed with water and dried over anhydrous Na2SO4. Removal of the solvents gave crude intermediate D17.2, which was used in the next step without further purification.


D17.3: tert-Butyl 4-(5-(2-hydroxy-1-(2-(trifluoromethyl)pyrimidin-4-ylamino)propan-2-yl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate

To a solution of the crude intermediate D17.2 (133 mg, 0.38 mmol) prepared above in acetonitrile (2 mL) were added 2-chloro-6-trifluoromethylpyrimidine (69 mg, 0.38 mmol), and DIEA (147 mg, 1.14 mmol). The mixture was stirred at 50° C. for 12 h. After the mixture was cooled to rt, EtOAc was added to extract the product. The organic layer was washed with water and dried over anhydrous Na2SO4. Removal of the solvents gave crude intermediate D17.3, which was used in the next step without further purification.


D17.4: 2-(2-Methyl-4-(piperidin-4-yl)pyrimidin-5-yl)-1-(2-(trifluoromethyl)pyrimidin-4-ylamino)propan-2-ol hydrochloride salt

Intermediate D17.4 was made from the Boc deprotection of intermediate D17.3 using General Procedure 2.


Compound D17

Compound D17 was made from intermediate D17.4 and 2,6-difluorophenyl isocyanate using General Procedure 5. 1H NMR (400 MHz, DMSO-d6) δ 8.61 (s, 1H), 8.24 (s, 1H), 8.09 (d, 1H), 7.97 (m, 1H), 7.24 (m, 1H), 7.09 (m, 2H), 6.74 (d, 1H), 5.76 (s, 1H), 4.18 (m, 2H), 3.55 (m, 3H), 2.85 (m, 2H), 2.51 (s, 3H), 1.70 (m, 4H). MS (EI) for C25H26F5N7O2. found: 552.2 (MH+). Analytical HPLC, ret. time=11.50 min, 96% purity.


Compound D18: N-[2-Fluoro-6-(trifluoromethyl)phenyl]-4-[5-(1-hydroxy-1-methyl-2-{[2-(trifluoromethyl)pyrimidin-4-yl]amino}ethyl)-2-methylpyrimidin-4-yl]piperidine-1-carboxamide

Compound D18 was made in a manner similar to Compound D17: 1H-NMR (400 MHz, CDCl3): δ 8.64 (s, 1H), 8.23 (d, 1H), 7.45 (m, 1H), 7.44-7.31 (m, 2H), 6.45 (d, 1H), 6.14 (s, 1H), 5.86 (t, 1H), 4.18 (t, 2H), 3.92 (br. s, 1H), 3.88 (m, 2H), 3.62 (m, 1H), 3.14-2.30 (m, 2H), 2.67 (s, 3H), 2.22-2.13 (m, 2H), 1.79-1.71 (m, 2H), 1.67 (s, 3H). MS (EI) for C26H26F7N7O2. found: 602.2 (MH+). Analytical HPLC, ret. time=11.4 min, 95% purity.


Compound D19: N-(2,6-Difluorophenyl)-4-[5-(1-hydroxy-1-methyl-2-{methyl[2-(trifluoromethyl)pyrimidin-4-yl]amino}ethyl)-2-methylpyrimidin-4-yl]piperidine-1-carboxamide
D19.1: tert-Butyl 4-(5-(2-hydroxy-1-(methylamino)propan-2-yl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate

Intermediate D19.1 was made from intermediate D17.1 using a method analogous to the method that was used to convert intermediate D17.1 to intermediate D17.2.


D19.2: tert-Butyl 4-(5-(2-hydroxy-1-(methyl(2-(trifluoromethyl)pyrimidin-4-yl)amino)propan-2-yl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate

Intermediate D19.2 was made from intermediate D19.1 using a method analogous to the method that was used to convert intermediate D17.2 to intermediate D17.3.


D194.3: 1-(Methyl(2-(trifluoromethyl)pyrimidin-4-yl)amino)-2-(2-methyl-4-(piperidin-4-yl)pyrimidin-5-yl)propan-2-ol hydrochloride salt

Intermediate D19.3 was made from the Boc deprotection of intermediate D19.2 using General Procedure 2.


Compound D19

Compound D19 was made from intermediate D19.3 and 2,6-difluorophenyl isocyanate using General Procedure 5. 1H NMR (400 MHz, DMSO-d6) δ 8.67 (m, 1H), 8.33 (m, 1H), 8.03 (m, 1H), 7.26 (m, 1H), 7.11 (m, 2H), 6.74 (m, 1H), 5.76 (s, 1H), 4.16 (m, 2H), 3.63 (s, 3H), 3.55 (m, 3H), 2.85 (m, 2H), 2.53 (s, 3H), 1.70 (m, 4H), 1.54 (s, 3H). MS (EI) for C26H28F5N7O2. found: 566.2 (MH+). Analytical HPLC, ret. time=12.44 min, 91% purity.


Compound D20: 2-(4-{1-[(2,6-Difluorophenyl)acetyl]piperidin-4-yl}-2-methylpyrimidin-5-yl)-1-{methyl[2-(trifluoromethyl)pyrimidin-4-yl]amino}propan-2-ol

Compound D20 was made from intermediate D19.3 and 2,6-difluorophenylacetic acid using General Procedure 4. 1H NMR (400 MHz, DMSO-d6) δ 8.67 (m, 1H), 8.33 (m, 1H), 7.34 (m, 1H), 7.05 (m, 2H), 6.90 (m, 1H), 5.73 (s, 1H), 4.47 (m, 2H), 4.16 (m, 2H), 3.63 (s, 3H), 3.55 (m, 3H), 2.85 (m, 2H), 2.53 (s, 3H), 1.70 (m, 4H), 1.54 (s, 3H). MS (EI) for C27H29F5N6O2. found: 565.2 (MH+). Analytical HPLC, ret. time=14.42 min, 95% purity.


Compound D21: N-(2,6-Difluorophenyl)-4-[5-(1-hydroxy-1-methyl-2-{[4-(trifluoromethyl)pyrimidin-2-yl]amino}ethyl)-2-methylpyrimidin-4-yl]piperidine-1-carboxamide
D21.1: tert-Butyl 4-(5-(2-hydroxy-1-(4-(trifluoromethyl)pyrimidin-2-ylamino)propan-2-yl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate

Intermediate D21.1 was made from intermediate D17.2 and 2-chloro-4-(trifluoromethyl)pyrimidine using a method analogous to that used to convert intermediate D17.2 to intermediate D17.3.


D21.2: 2-(2-Methyl-4-(piperidin-4-yl)pyrimidin-5-yl)-1-(4-(trifluoromethyl)pyrimidin-2-ylamino)propan-2-ol hydrochloride salt

Intermediate D21.2 was made from the Boc deprotection of intermediate D21.1 using General Procedure 2.


Compound D21

Compound D21 was made from intermediate D21.2 and 2,6-difluorophenyl isocyanate using General Procedure 5. 1H NMR (400 MHz, DMSO-d6) δ 8.50 (m, 2H), 8.23 (s, 1H), 7.58 (m, 1H), 7.24 (m, 1H), 7.09 (m, 2H), 6.92 (d, 1H), 5.64 (s, 1H), 4.16 (m, 2H), 3.55 (m, 3H), 2.85 (m, 2H), 2.53 (s, 3H), 1.70 (m, 4H), 1.54 (s, 3H). MS (EI) for C25H26F5N7O2. found: 552.1 (MH+). Analytical HPLC, ret. time=12.47 min, 94% purity.


Compound D22: N-[2-Fluoro-6-(trifluoromethyl)phenyl]-4-[5-(1-hydroxy-1-methyl-2-{[4-(trifluoromethyl)pyrimidin-2-yl]amino}ethyl)-2-methylpyrimidin-4-yl]piperidine-1-carboxamide

Compound D22 was made in a manner similar to Compound D21: 1H-NMR (400 MHz, CDCl3): δ 8.66 (s, 1H), 8.51 (d, 1H), 7.45 (d, 1H), 7.38-7.31 (m, 2H), 6.93 (d, 1H), 6.12 (s, 1H), 5.85 (br. s, 1H), 4.20 (m, 2H), 3.91 (d, 2H), 3.66 (m, 1H), 3.11-2.98 (m, 2H), 2.67 (s, 3H), 2.23-2.10 (m, 2H), 1.81-1.73 (m, 2H), 1.70 s, 3H). MS (EI) for C26H26F7N7O2. found: 602.2 (MH+). Analytical HPLC, ret. time=13.7 min, 99% purity.


Compound D23: 2-(4-{1-[(2,6-Difluorophenyl)acetyl]piperidin-4-yl}-2-methylpyrimidin-5-yl)-1-{[4-(trifluoromethyl)pyrimidin-2-yl]amino}propan-2-ol

Compound D23 was made from intermediate D21.2 and 2,6-difluorophenylacetic acid using General Procedure 4. 1H NMR (400 MHz, DMSO-d6) δ 8.50 (m, 2H), 7.58 (m, 1H), 7.34 (m, 1H), 7.03 (m, 2H), 6.91 (m, 1H), 5.64 (s, 1H), 4.47 (m, 2H), 4.16 (m, 2H), 3.55 (m, 3H), 2.85 (m, 2H), 2.53 (s, 3H), 1.70 (m, 4H), 1.54 (s, 3H). MS (EI) for C26H27F5N6O2. found: 551.2 (MH+). Analytical HPLC, ret. time=14.19 min, 97% purity.


Compound D24: 2-(4-{1-[(2,6-difluorophenyl)acetyl]piperidin-4-yl}-2-methylpyrimidin-5-yl)-1-{[6-(trifluoromethyl)pyridin-2-yl]oxy}propan-2-ol
D24.1: tert-Butyl 4-(5-(2-bromoacetyl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate

Intermediate D24.1 was made from intermediate B36.1 using a method analogous to that used to convert intermediate C70.2 to intermediate C70.3.


D24.2: tert-Butyl 4-(2-methyl-5-(2-(6-(trifluoromethyl)pyridin-2-yloxy)acetyl)pyrimidin-4-yl)piperidine-1-carboxylate

Crude intermediate D24.1 (1.4 g, 3.5 mmol) was mixed with 2-hydroxy-6-trifluoromethylpyridine (700 mg, 3.85 mmol) in acetone (15 mL). To this mixture was added K2CO3 (1.0 g, 7.2 mmol). The resulting mixture was stirred for 3 h. EtOAc was added to extract the product. The organic phase was washed with saturated NaHCO3, brine, and dried over anhydrous Na2SO4. After removal of the solvents, the residue was purified by flash column chromatography to give intermediate D24.2 (810 mg, 48%).


D24.3: tert-Butyl 4-(5-(2-hydroxy-1-(6-(trifluoromethyl)pyridin-2-yloxy)propan-2-yl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate

To a 0° C. solution of methyl magnesium bromide in THF (0.3 mL, 1.4 M in THF, 0.42 mmol) was added dropwise a solution of intermediate D24.2 (50 mg, 0.1 mmol) in PhMe (1 mL). The reaction mixture was stirred at 0° C. for 10 min, and then was quenched by slow addition of ice-water. The mixture was extracted with EtOAc, washed with brine, and dried over anhydrous Na2SO4. After removal of the solvents, the residue was purified by flash column chromatography to give intermediate D24.3 (30 mg, 60%).


D24.4: 2-(2-Methyl-4-(piperidin-4-yl)pyrimidin-5-yl)-1-(6-(trifluoromethyl)pyridin-2-yloxy)propan-2-ol hydrochloride salt

Intermediate D24.4 was made from the Boc deprotection of intermediate D24.3 using General Procedure 2.


Compound D24

Compound D24 was made from intermediate D24.4 and 2,6-difluorophenylacetic acid using General Procedure 4. 1H NMR (400 MHz, DMSO-d6) δ 8.64 (s, 1H), 7.95 (t, 1H), 7.48 (d, 1H), 7.35 (m, 1H), 7.09 (m, 3H), 5.77 (s, 1H), 4.57 (m, 2H), 4.48 (m, 1H), 4.16 (m, 1H), 3.80 (m, 3H), 3.20 (m, 1H), 2.65 (m, 1H), 2.55 (s, 3H), 1.90 (m, 1H), 1.65 (m, 3H), 1.68 (s, 3H). MS (EI) for C27H27F5N4O3. found: 551.2 (MH+). Analytical HPLC, ret. time=16.67 min, 99% purity.


Compound D25: N-(2,6-difluorophenyl)-4-[5-(1-hydroxy-1-methyl-2-{[6-(trifluoromethyl)pyridin-2-yl]oxy}ethyl)-2-methylpyrimidin-4-yl]piperidine-1-carboxamide

Compound D25 was made from intermediate C24.4 and 2,6-difluorophenyl isocyanate using General Procedure 5. H NMR (400 MHz, DMSO-d6) δ 8.63 (s, 1H), 8.21 (s, 1H), 7.95 (t, 1H), 7.49 (d, 1H), 7.27 (m, 1H), 7.09 (m, 3H), 5.77 (s, 1H), 4.57 (m, 2H), 4.21 (m, 2H), 3.82 (m, 1H), 2.90 (m, 2H), 2.55 (s, 3H), 1.70 (m, 4H), 1.66 (s, 3H). MS (EI) for C26H26F5N5O3. found: 552.2 (MH+). Analytical HPLC, ret. time=14.26 min, 95% purity.


Compound D26: N-(2,6-Difluorophenyl)-4-[5-(1-hydroxy-1-methyl-2-{[6-(trifluoromethyl)pyridin-2-yl]oxy}ethyl)-2-(methylthio)pyrimidin-4-yl]piperidine-1-carboxamide
D26.1: tert-Butyl 4-(5-(2-bromoacetyl)-2-(methylthio)pyrimidin-4-yl)piperidine-1-carboxylate

Intermediate D26.1 was synthesized from intermediate B50.3 using a method analogous to the method used to convert intermediate C70.2 to intermediate C70.3.


D26.2: tert-Butyl 4-(2-(methylthio)-5-(2-(6-(trifluoromethyl)pyridin-2-yloxy)acetyl)pyrimidin-4-yl)piperidine-1-carboxylate

Intermediate D26.2 was synthesized from intermediate D26.1 and 6-(trifluoromethyl)pyridin-2-ol using a method analogous to that used to synthesize intermediate D24.2 from intermediate D24.1.


D26.3: tert-Butyl 4-(5-(2-hydroxy-1-(6-(trifluoromethyl)pyridin-2-yloxy)propan-2-yl)-2-(methylthio)pyrimidin-4-yl)piperidine-1-carboxylate

Intermediate D26.3 was synthesized from intermediate D26.2 using a method analogous to that used to convert intermediate D24.2 to intermediate D24.3.


D26.4: 2-(2-(Methylthio)-4-(piperidin-4-yl)pyrimidin-5-yl)-1-(6-(trifluoromethyl)pyridin-2-yloxy)propan-2-ol hydrochloride salt

Intermediate D26.4 was synthesized from the Boc deprotection of intermediate D26.3 using General Procedure 2.


Compound D26

Compound D26 was made from intermediate D26.4 and 2,6-difluorophenyl isocyanate using General Procedure 5. 1H-NMR (400 MHz, CDCl3): δ 8.52 (s, 1H), 7.78 (t, 1H), 7.35 (d, 1H), 7.12 (m, 1H), 6.94 (m, 3H), 5.92 (s, 1H), 4.80 (d, 1H), 4.60 (d, 1H), 4.24 (d, 2H), 3.89 (s, 1H), 3.70 (tt, 1H), 3.05 (qd, 2H), 2.14 (m, 2H), 1.81 (m, 2H), 1.71 (s, 3H). MS (EI) for C26H26F5N5O3S. found 584.2 (MH+). Analytical HPLC, ret. time=19.552 min, 95% purity.


Compound D27: 4-[2-Amino-5-(1-hydroxy-1-methyl-2-{[6-(trifluoromethyl)pyridin-2-yl]oxy}ethyl)pyrimidin-4-yl]-N-(2,6-difluorophenyl)piperidine-1-carboxamide
D27.1: N-(2,6-Difluorophenyl)-4-(5-(2-hydroxy-1-(6-(trifluoromethyl)pyridin-2-yloxy)propan-2-yl)-2-(methylsulfonyl)pyrimidin-4-yl)piperidine-1-carboxamide

Intermediate D27.1 was synthesized from Compound D26 using General Procedure 6.


Compound D27

Compound D27 was synthesized from intermediate D27.1 using a method analogous to that used to convert intermediate C69.6 to Compound C69. 1H-NMR (400 MHz, CDCl3): δ 8.29 (s, 1H), 7.77 (t, 1H), 7.33 (d, 1H), 7.11 (m, 1H), 6.95 (m, 3H), 5.91 (s, 1H), 4.93 (s, 2H), 4.77 (d, 1H), 4.52 (d, 1H), 4.23 (d, 2H), 3.64 (tt, 1H), 3.57 (s, 1H), 3.03 (qd, 2H), 2.07 (m, 2H), 1.78 (m, 2H), 1.69 (s, 3H). MS (EI) for C25H25F5N6O3. found 553.1 (MH+). Analytical HPLC, ret. time=12.596 min, 95% purity.


Compound D28: N-(2,6-Difluorophenyl)-4-[5-(1-hydroxy-1-methyl-2-{[2-(trifluoromethyl)pyrimidin-4-yl]oxy}ethyl)-2-(methylthio)pyrimidin-4-yl]piperidine-1-carboxamide
D28.1: tert-Butyl 4-(2-(methylthio)-5-(2-(2-(trifluoromethyl)pyrimidin-4-yloxy)acetyl)pyrimidin-4-yl)piperidine-1-carboxylate

Intermediate D28.1 was synthesized from intermediate D26.1 and 2-(trifluoromethyl)pyrimidin-4-ol using a method analogous to that used to synthesize intermediate D24.2 from intermediate D24.1.


D28.2: tert-Butyl 4-(5-(2-hydroxy-1-(2-(trifluoromethyl)pyrimidin-4-yloxy)propan-2-yl)-2-(methylthio)pyrimidin-4-yl)piperidine-1-carboxylate

Intermediate D28.2 was synthesized from intermediate D28.1 using a method analogous to that used to convert intermediate D24.2 to intermediate D24.3.


D28.3: 2-(2-(Methylthio)-4-(piperidin-4-yl)pyrimidin-5-yl)-1-(2-(trifluoromethyl)pyrimidin-4-yloxy)propan-2-ol hydrochloride salt

Intermediate D28.3 was synthesized from the Boc deprotection of intermediate D28.2 using General Procedure 2.


Compound D28

Compound D28 was made from intermediate D28.3 and 2,6-difluorophenyl isocyanate using General Procedure 5. 1H-NMR (400 MHz, CDCl3): δ 8.64 (d, 1H), 8.47 (s, 1H), 7.13 (m, 1H), 6.95 (m, 3H), 5.93 (s, 1H), 4.84 (d, 1H), 4.66 (d, 1H), 4.25 (d, 2H), 3.71 (m, 1H), 3.06 (t, 2H), 2.95 (s, 1H), 2.57 (s, 3H), 2.15 (m, 2H), 1.80 (m, 2H), 1.76 (s, 3H). MS (EI) for C25H25F5N6O3S. found 585.2 (MH+). Analytical HPLC, ret. time=14.052 min, 95% purity.


Compound D29: 4-[2-Amino-5-(1-hydroxy-1-methyl-2-{[2-(trifluoromethyl)pyrimidin-4-yl]oxy}ethyl)pyrimidin-4-yl]-N-(2,6-difluorophenyl)piperidine-1-carboxamide
D29.1: N-(2,6-Difluorophenyl)-4-(5-(2-hydroxy-1-(2-(trifluoromethyl)pyrimidin-4-yloxy)propan-2-yl)-2-(methylsulfonyl)pyrimidin-4-yl)piperidine-1-carboxamide

Intermediate D29.1 was synthesized from Compound D28 using General Procedure 6.


Compound D29

Compound D29 was synthesized from intermediate D29.1 using a method analogous to that used to convert intermediate C69.6 to Compound C69. 1H NMR (400 MHz, CDCl3) δ 8.63 (d, 1H), 8.24 (s, 1H), 7.11 (m, 1H), 6.95 (m, 3H), 5.91 (s, 1H), 5.04 (s, 2H), 4.81 (d, 1H), 4.59 (d, 1H), 4.24 (d, 2H), 3.64 (m, 1H), 3.04 (t, 2H), 2.72 (bs, 1H), 2.21 (dd, 2H), 1.75 (s, 3H), 1.74 (m, 2H). MS (EI) for C24H24F5N7O3. found: 554.2 (MH+). Analytical HPLC, ret. time=11.54 min, 99% purity.


Compound D30: 2-(2-Amino-4-{1-[(2,6-difluorophenyl)acetyl]piperidin-4-yl}pyrimidin-5-yl)-1-{[2-(trifluoromethyl)pyrimidin-4-yl]oxy}propan-2-ol
D30.1: 2-(2,6-Difluorophenyl)-1-(4-(5-(2-hydroxy-1-(2-(trifluoromethyl)pyrimidin-4-yloxy)propan-2-yl)-2-(methylthio)pyrimidin-4-yl)piperidin-1-yl)ethanone

Compound D30.1 was made from intermediate D28.3 and 2,6-difluorophenylacetic acid using General Procedure 4.


D30.2: 2-(2,6-Difluorophenyl)-1-(4-(5-(2-hydroxy-1-(2-(trifluoromethyl)pyrimidin-4-yloxy)propan-2-yl)-2-(methylsulfonyl)pyrimidin-4-yl)piperidin-1-yl)ethanone

Intermediate D30.2 was synthesized from intermediate D30.1 using General Procedure 6.


Compound D30

Compound D30 was synthesized from intermediate D30.2 using a method analogous to that used to convert intermediate C69.6 to Compound C69. 1H NMR (400 MHz, CDCl3) δ 8.63 (d, 1H), 8.24 (bs, 1H), 7.22 (td, 1H), 6.98-6.84 (m, 3H), 5.04 (s, 2H), 4.79 (dt, 2H), 4.59 (d, 1H), 4.11 (d, 1H), 3.77 (s, 2H), 3.66 (d, 1H), 3.23 (t, 1H), 2.79-2.60 (m, 2H), 2.01 (ddd, 4H), 1.76 (s, 3H), 1.72 (d, 4H). MS (EI) for C25H25F5N6O3. found: 553.1 (MH+). Analytical HPLC, ret. time=9.80 min, 98% purity.


Compound D31: 4-[2-(Acetylamino)-5-(1-hydroxy-1-methyl-2-{[2-(trifluoromethyl)pyrimidin-4-yl]oxy}ethyl)pyrimidin-4-yl]-N-(2,6-difluorophenyl)piperidine-1-carboxamide

To a solution of Compound D29 (33.1 mg, 0.06 mmol) in pyridine (2 mL) was slowly added acetyl chloride (23.4 mg, 0.30 mmol) at 0° C. The resulting white mixture was stirred for a half hour at 0° C. Upon completion of the reaction, the mixture was quenched with ice and extracted with ethyl acetate (3×10 mL). The combined organic extracts were dried over magnesium sulfate and concentrated in vacuo. The crude product was purified by preparative HPLC to give Compound D31; 1H NMR (400 MHz, CDCl3) δ 8.64 (d, 1H), 8.54 (s, 1H), 7.93 (s, 1H), 7.13 (t, 1H), 6.94 (dd, 3H), 5.91 (s, 1H), 4.83 (d, 1H), 4.68 (d, 1H), 4.25 (d, 2H), 3.75 (s, 1H), 3.06 (t, 2H), 2.88 (s, 1H), 2.54 (s, 3H), 2.15-1.99 (m, 2H), 1.81 (m, 2H), 1.77 (s, 3H). MS (EI) for C26H26F5N7O4. found: 596.2 (MH+). Analytical HPLC, ret. time=13.76 min, 99% purity.


Compound D32: 4-[2-(Acetylamino)-5-(1-hydroxy-1-methyl-2-{[6-(trifluoromethyl)pyridin-2-yl]oxy}ethyl)pyrimidin-4-yl]-N-(2,6-difluorophenyl)piperidine-1-carboxamide

Compound D32 was made in a manner similar to Compound D31: 1H NMR (400 MHz, CDCl3) δ 8.59 (s, 1H), 7.94 (s, 1H), 7.79 (t, 1H), 7.35 (d, 1H), 7.16-7.07 (m, 1H), 6.99-6.90 (m, 3H), 5.92 (s, 1H), 4.80 (d, 1H), 4.61 (d, 1H), 4.24 (d, 2H), 3.85 (s, 1H), 3.76 (dd, 1H), 3.13-2.98 (m, 2H), 2.54 (s, 3H), 2.12-1.97 (m, 2H), 1.89-1.75 (m, 2H), 1.73 (s, 3H). MS (EI) for C27H27F5N6O4. found: 595.1 (MH+). Analytical HPLC, ret. time=11.59 min, 99% purity.


Compound D33: N-[4-{1-[(2,6-Difluorophenyl)acetyl]piperidin-4-yl}-5-(1-hydroxy-1-methyl-2-{[2-(trifluoromethyl)pyrimidin-4-yl]oxy}ethyl)pyrimidin-2-yl]acetamide

Compound D33 was made in a manner similar to Compound D31: 1H-NMR (400 MHz, CDCl3): δ 8.64 (d, 1H), 8.56 (br s, 1H), 8.23 (br s, 1H), 7.23 (m, 1H), 6.92 (m, 3H), 4.80 (m, 2H), 4.68 (d, 1H), 4.13 (d, 1H), 3.77 (comp m, 3H), 3.27 (t, 1H), 3.12 (br s, 1H), 2.70 (t, 1H), 2.51 (s, 3H), 2065-1.68 (comp m, 7H). MS (EI) for C27H27F5N6O4. found: 595.1 (MH+). Analytical HPLC, ret. time=11.47 min, 96% purity.


Compound D34: 4-[2-(Cyclopropylamino)-5-(1-hydroxy-1-methyl-2-{[2-(trifluoromethyl)pyrimidin-4-yl]oxy}ethyl)pyrimidin-4-yl]-N-(2,6-difluorophenyl)piperidine-1-carboxamide

Compound D34 was synthesized from intermediate D29.1 and cyclopropylamine using a method analogous to the conversion of intermediate B53.1 to Compound B60. 1H NMR (400 MHz, CDCl3) δ 8.63 (d, 1H), 8.28 (s, 1H), 7.17-7.06 (m, 1H), 6.94 (t, 3H), 5.91 (s, 1H), 5.38 (s, 1H), 4.81 (d, 1H), 4.57 (d, 1H), 4.23 (d, 2H), 3.64 (d, 1H), 3.05 (t, 2H), 2.72 (t, 2H), 2.69 (bs, 1H), 2.08 (m, 2H), 1.85-1.66 (m, 2H), 1.77 (s, 3H), 0.83 (m, 2H), 0.54 (m, 2H). MS (EI) for C27H28F5N7O3. found: 594.2 (MH+). Analytical HPLC, ret. time=12.48 min, 97% purity.


Compound D35: N-(2,6-Difluorophenyl)-4-[2-(ethylamino)-5-(1-hydroxy-1-methyl-2-{[2-(trifluoromethyl)pyrimidin-4-yl]oxy}ethyl)pyrimidin-4-yl]piperidine-1-carboxamide

Compound D35 was made in a manner similar to Compound D34: 1H-NMR (400 MHz, CDCl3, DMSO-d6): δ 8.62 (d, 1H), 8.23 (br s, 1H), 7.32 (s, 1H), 6.97 (d, 1H), 6.94 (t, 2H), 5.61 (br s, 1H), 4.70 (d, 1H), 4.61 (d, 1H), 4.34 (d, 2H), 3.80 (m, 1H), 3.58 (m, 2H), 3.00 (m, 2H), 2.01 (m, 2H), 1.80 (m, 2H), 1.72 (s, 3H), 1.30 (t, 3H). MS (EI) for C26H28F5N7O3. found 582.2 (MH+). Analytical HPLC, ret. time=13.528 min, 95% purity.


Compound D36: N-(2,6-Difluorophenyl)-4-[5-(1-hydroxy-1-methyl-2-{[2-(trifluoromethyl)pyrimidin-4-yl]oxy}ethyl)-2-(methylamino)pyrimidin-4-yl]piperidine-1-carboxamide

Compound D36 was made in a manner similar to Compound D34: 1H-NMR (400 MHz, CDCl3): δ 8.62 (d, 1H), 8.23 (s, 1H), 7.12 (m, 1H), 6.94 (t, 2H), 6.95 (d, 1H), 5.92 (s, 1H), 5.03 (m, 1H), 4.81 (d, 1H), 4.56 (d, 1H), 4.23 (d, 2H), 3.64 (tt, 1H), 3.05 (tt, 2H), 3.00 (d, 3H), 2.66 (s, 1H), 2.11 (m, 2H), 1.78 (m, 2H), 1.72 (s, 3H). MS (EI) for C25H26F5N7O3. found 568.2 (MH+). Analytical HPLC, ret. time=12.940 min, 97% purity.


Compound D37: 4-[2-({[2,4-Bis(methyloxy)phenyl]methyl}amino)-5-(1-hydroxy-1-methyl-2-{[2-(trifluoromethyl)pyrimidin-4-yl]oxy}ethyl)pyrimidin-4-yl]-N-(2,6-difluorophenyl)piperidine-1-carboxamide

Compound D37 was made in a manner similar to Compound D34: 1H NMR (400 MHz, CDCl3) δ 8.62 (d, 1H), 8.19 (s, 1H), 7.25 (m, 1H), 7.10 (m, 1H), 6.99-6.88 (m, 3H), 6.50-6.40 (m, 2H), 5.93 (s, 1H), 5.69-5.51 (m, 1H), 4.80 (d, 1H), 4.60-4.48 (m, 3H), 4.25 (d, 2H), 3.85 (s, 3H), 3.79 (s, 3H), 3.62 (m, 1H), 3.05 (m, 2H), 2.12 (m, 2H), 1.76 (m, 2H), 1.70 (s, 3H). MS (EI) for C33H34F5N7O5. found: 704.2 (MH+). Analytical HPLC, ret. time=14.58 min, 95% purity.


Compound M2: N-(2,6-Difluorophenyl)-4-[2-(methylthio)-5-({[2-(trifluoromethyl)pyrimidin-4-yl]oxy}acetyl)pyrimidin-4-yl]piperidine-1-carboxamide
M2.1: 1-(2-(Methylthio)-4-(piperidin-4-yl)pyrimidin-5-yl)-2-(2-(trifluoromethyl)pyrimidin-4-yloxy)ethanone hydrochloride salt

Intermediate M2.1 was made from the Boc deprotection of intermediate D28.1 using General Procedure 2.


Compound M2

Compound M2 was made from intermediate M2.1 and 2,6-difluorophenyl isocyanate using General Procedure 5. 1H NMR (400 MHz, CDCl3) δ 8.85 (s, 1H), 8.69 (d, 1H), 7.17-7.05 (m, 2H), 6.93 (t, 2H), 5.88 (s, 1H), 5.52 (s, 2H), 4.21 (d, 2H), 3.50 (t, 1H), 3.02 (t, 2H), 2.63 (s, 3H), 2.09-1.93 (m, 2H), 1.85 (d, 2H). MS (EI) for C24H21F5N6O3S. found: 569.1 (MH+). Analytical HPLC, ret. time=19.42 min, 99% purity.


Compound D38: N-(2,6-Difluorophenyl)-4-[2-(dimethylamino)-5-(1-hydroxy-1-methyl-2-{[2-(trifluoromethyl)pyrimidin-4-yl]oxy}ethyl)pyrimidin-4-yl]piperidine-1-carboxamide
D38.1: N-(2,6-Difluorophenyl)-4-(2-(methylsulfonyl)-5-(2-(2-(trifluoromethyl)pyrimidin-4-yloxy)acetyl)pyrimidin-4-yl)piperidine-1-carboxamide

Intermediate D38.1 was made from Compound M2 using General Procedure 6.


D38.2: N-(2,6-Difluorophenyl)-4-(2-(dimethylamino)-5-(2-(2-(trifluoromethyl)pyrimidin-4-yloxy)acetyl)pyrimidin-4-yl)piperidine-1-carboxamide

Intermediate D38.2 was made from intermediate D38.1 and dimethylamine using a method analogous to the conversion of intermediate B53.1 to Compound B60.


Compound D38

Compound D38 was made from intermediate D38.2 using a method analogous to the synthesis of intermediate D24.3 from D24.2. 1H NMR (400 MHz, CDCl3) δ 8.61 (d, 1H), 8.26 (s, 1H), 7.16-7.07 (m, 1H), 6.93 (dd, 3H), 5.91 (s, 1H), 4.81 (d, 1H), 4.55 (d, 1H), 4.23 (d, 2H), 3.64 (t, 1H), 3.18 (s, 6H), 3.06 (t, 2H), 2.55 (s, 1H), 2.22-1.98 (m, 3H), 1.77 (m, 2H), 1.71 (s, 3H). MS (EI) for C26H28F5N7O3. found: 582.2 (MH+). Analytical HPLC, ret. time=12.53 min, 97% purity.


Compound D39: 4-{2-[(2,2-Difluoroethyl)amino]-5-(1-hydroxy-1-methyl-2-{[2-(trifluoromethyl)pyrimidin-4-yl]oxy}ethyl)pyrimidin-4-yl}-N-(2,6-difluorophenyl)piperidine-1-carboxamide

Compound D39 was made in a manner similar to Compound D39: 1H NMR (400 MHz, CDCl3) δ 8.63 (d, 1H), 8.26 (s, 1H), 7.12 (tt, 1H), 6.99-6.88 (m, 3H), 6.08-5.80 (tt, 1H), 5.93 (s, 1H), 5.45 (bs, 1H), 4.79 (d, 1H), 4.60 (d, 1H), 4.23 (d, 2H), 3.92-3.76 (m, 2H), 3.73-3.60 (m, 1H), 3.04 (t, 2H), 2.70 (bs, 1H), 2.17-1.97 (m, 2H), 1.83-1.74 (m, 2H), 1.73 (s, 3H). MS (EI) for C26H26F7N7O3. found: 617.9 (MH+). Analytical HPLC, ret. time=14.76 min, 99% purity.


Compound D40: N-(2,6-Difluorophenyl)-4-{5-(1-hydroxy-1-methyl-2-{[2-(trifluoromethyl)pyrimidin-4-yl]oxy}ethyl)-2-[(1-methylethyl)oxy]pyrimidin-4-yl}piperidine-1-carboxamide

A solution of intermediate D29.1 (45.3 mg, 0.07 mmol) in isopropyl alcohol (3 mL) was treated with sodium (˜7 mg). The resulting mixture was monitored by LC/MS and quenched with an ice upon completion in 15 min at room temperature. The mixture was diluted with water (5 mL) and extracted with ethyl acetate (3×10 mL). The combined organic layers were dried over magnesium sulfate and concentrated in vacuo. The crude product was purified by prep HPLC to give Compound D40; 1H NMR (400 MHz, CDCl3) δ 8.63 (d, 1H), 8.46 (s, 1H), 7.17-7.06 (m, 1H), 7.01-6.88 (m, 3H), 5.89 (s, 1H), 5.39-5.31 (m, 1H), 5.28 (dt, 1H), 4.82 (d, 1H), 4.65 (d, 1H), 4.26 (d, 2H), 3.71 (dd, 1H), 3.06 (t, 2H), 2.80 (bs, 1H), 2.30-2.09 (m, 2H), 2.06-1.97 (m, 2H), 1.82 (d, 2H), 1.76 (s, 3H), 1.40 (d, 6H). MS (EI) for C27H29F5N6O4. found: 597.2 (MH+). Analytical HPLC, ret. time=17.84 min, 99% purity.


Compound D41: 4-{2-[(2,2-Difluoroethyl)oxy]-5-(1-hydroxy-1-methyl-2-{[2-(trifluoromethyl)pyrimidin-4-yl]oxy}ethyl)pyrimidin-4-yl}-N-(2,6-difluorophenyl)piperidine-1-carboxamide

Compound D41 was made from intermediate D29.1 in a manner similar to Compound D40: 1H NMR (400 MHz, CDCl3) δ 8.64 (d, 1H), 8.52 (s, 1H), 7.16-7.07 (m, 1H), 6.99-6.90 (m, 3H), 6.29-6.01 (tt, 1H), 5.91 (s, 1H), 4.82 (d, 1H), 4.68 (d, 1H), 4.60 (td, 2H), 4.26 (d, 2H), 3.75 (t, 1H), 3.06 (t, 2H), 2.24-1.95 (m, 2H), 1.87-1.78 (m, 2H), 1.77 (s, 3H). MS (EI) for C26H25F7N6O4. found: 619.2 (MH+). Analytical HPLC, ret. time=17.78 min, 99% purity.


Compound D42: N-(2,6-Difluorophenyl)-4-[2-{[2-fluoro-1-(fluoromethyl)ethyl]oxy}-5-(1-hydroxy-1-methyl-2-{[2-(trifluoromethyl)pyrimidin-4-yl]oxy}ethyl)pyrimidin-4-yl]piperidine-1-carboxamide

Compound D41 was made from intermediate D29.1 in a manner similar to Compound D40: 1H NMR (400 MHz, CDCl3) δ 8.65 (d, 1H), 8.52 (s, 1H), 7.12 (t, 1H), 7.00-6.90 (m, 3H), 5.89 (s, 1H), 5.58 (t, 1H), 4.87-4.80 (m, 3H), 4.70 (dd, 2H), 4.26 (d, 2H), 3.74 (s, 1H), 3.06 (t, 2H), 2.09 (d, 2H), 2.04 (s, 1H), 1.81 (m, 2H), 1.77 (s, 3H). MS (EI) for C27H27F7N6O4. found: 633.2 (MH+). Analytical HPLC, ret. time=17.62 min, 99% purity.


Compound D43: N-(2,6-Difluorophenyl)-4-{2-[(2-fluoroethyl)oxy]-5-(1-hydroxy-1-methyl-2-{[2-(trifluoromethyl)pyrimidin-4-yl]oxy}ethyl)pyrimidin-4-yl}piperidine-1-carboxamide

Compound D41 was made from intermediate D29.1 in a manner similar to Compound D40: 1H NMR (400 MHz, CDCl3) δ 8.64 (d, 1H), 8.50 (s, 1H), 7.17-7.08 (m 1H), 6.99-6.88 (m, 3H), 5.90 (s, 1H), 4.84 (dd, 2H), 4.75-4.70 (m, 1H), 4.70-4.65 (m, 2H), 4.63-4.59 (m, 1H), 4.26 (d, 2H), 3.73 (t, 1H), 3.06 (t, 2H), 2.22-2.06 (m, 3H), 1.79 (d, 2H), 1.77 (s, 3H). MS (EI) for C26H26F6N6O4. found: 601.2 (MH+). Analytical HPLC, ret. time=16.38 min, 99% purity.


Compound D44: N-(2,6-Difluorophenyl)-4-[5-(1-hydroxy-1-methyl-2-{[2-(trifluoromethyl)pyrimidin-4-yl]oxy}ethyl)-2-(methyloxy)pyrimidin-4-yl]piperidine-1-carboxamide

Compound D41 was made from intermediate D29.1 in a manner similar to Compound D40: 1H NMR (400 MHz, CDCl3) δ 8.64 (d, 1H), 8.48 (s, 1H), 7.17-7.07 (m, 1H), 6.94 (dd, 3H), 5.91 (s, 1H), 4.84 (d, 1H), 4.66 (d, 1H), 4.26 (d, 2H), 4.01 (s, 3H), 3.72 (t, 1H), 3.06 (t, 2H), 2.25-2.07 (m, 2H), 1.76 (s, 3H). MS (EI) for C25H25F5N6O4. found: 569.2 (MH+). Analytical HPLC, ret. time=17.16 min, 99% purity.


Compound D45: N-(2,6-Difluorophenyl)-4-[5-(1-hydroxy-1-methyl-2-{[6-(trifluoromethyl)pyridin-2-yl]oxy}ethyl)-2-(methyloxy)pyrimidin-4-yl]piperidine-1-carboxamide

Compound D41 was made from intermediate D12.1 in a manner similar to Compound D40: 1H NMR (400 MHz, CDCl3) δ 8.53 (s, 1H), 7.78 (t, 1H), 7.34 (d, 1H), 7.17-7.06 (m, 1H), 6.98-6.89 (m, 3H), 5.89 (s, 1H), 4.79 (d, 1H), 4.59 (d, 1H), 4.25 (d, 2H), 4.00 (s, 3H), 3.83-3.62 (m, 2H), 3.04 (tt, 2H), 2.22-2.08 (m, 3H), 1.82 (dd, 2H), 1.72 (s, 3H). MS (EI) for C26H26F5N5O4. found: 568.2 (MH+). Analytical HPLC, ret. time=14.05 min, 99% purity.


Compound M3: 2,6-Difluorophenyl 4-[2-amino-5-({[2-(trifluoromethyl)pyrimidin-4-yl]oxy}acetyl)pyrimidin-4-yl]piperidine-1-carboxylate
M3.1: 2,6-Difluorophenyl 4-(2-(methylthio)-5-(2-(2-(trifluoromethyl)pyrimidin-4-yloxy)acetyl)pyrimidin-4-yl)piperidine-1-carboxylate

Intermediate M3.1 was synthesized from intermediate M2.1 and 2,6-difluorophenyl chloroformate using a method analogous to that used to make Compound A119 from intermediate A116.3 and 2-chlorophenyl chloroformate.


M3.2: 2,6-Difluorophenyl 4-(2-(methylsulfonyl)-5-(2-(2-(trifluoromethyl)pyrimidin-4-yloxy)acetyl)pyrimidin-4-yl)piperidine-1-carboxylate

Intermediate M3.2 was made from intermediate M3.1 using General Procedure 6.


Compound M3

Compound M3 was made from intermediate M3.2 using General Procedure 7. 1H NMR (400 MHz, CDCl3) δ δ 8.75 (s, 1H), 8.67 (d, 1H), 7.19-7.07 (m, 2H), 6.96 (t, 2H), 5.52 (dd, 4H), 4.41 (d, 1H), 4.30 (d, 1H), 3.61 (ddd, 1H), 3.11 (t, 1H), 2.96 (t, 1H), 1.88 (m, 4H). MS (EI) for C23H19F5N6O4. found: 539.2 (MH+). Analytical HPLC, ret. time=14.79 min, 99% purity.


Compound D46: 2,6-Difluorophenyl 4-[2-amino-5-(1-hydroxy-1-methyl-2-{[2-(trifluoromethyl)pyrimidin-4-yl]oxy}ethyl)pyrimidin-4-yl]piperidine-1-carboxylate

Compound D46 was made from Compound M3 using a method analogous to that used to convert intermediate D24.2 to intermediate D24.3. 1H NMR (400 MHz, CDCl3) δ 8.63 (d, 1H), 8.23 (s, 1H), 7.14 (dq, 1H), 6.97 (dd, 3H), 5.15 (s, 2H), 4.80 (d, 1H), 4.60 (d, 1H), 4.46 (d, 1H), 4.35 (d, 1H), 3.64 (t, 1H), 3.13 (t, 1H), 2.98 (t, 1H), 2.70 (bs, 1H), 2.10 (m, 2H), 1.85-1.71 (m, 2H), 1.76 (s, 3H). MS (EI) for C24H23F5N6O4. found: 555.2 (MH+). Analytical HPLC, ret. time=15.62 min, 97% purity.


Compound D47: N-(2,6-Difluorophenyl)-4-(5-{1-hydroxy-1-methyl-2-[6-(trifluoromethyl)pyridin-2-yl]ethyl}-2-methylpyrimidin-4-yl)piperidine-1-carboxamide
D47.1: tert-Butyl 4-(5-(2-hydroxy-1-(6-(trifluoromethyl)pyridin-2-yl)propan-2-yl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate

To a −78° C. solution of 2-methyl-6-trifluoromethylpyridine (320 mg, 2.0 mmol) in THF (6 mL) was added nBuLi (0.8 mL, 2.5 M in hexanes, 2.0 mmol). The resulting solution was stirred at −78° C. for 1 h. A solution of intermediate B36.1 (128 mg, 0.4 mmol) in THF (1 mL) was added. The mixture was stirred for 2 h and was allowed to warm to rt gradually. Water was added slowly to quench the reaction. EtOAc was added to extract the product. The organic phase was washed with saturated NaHCO3, brine, and dried over anhydrous Na2SO4. After removal of the solvents, the residue was purified by flash column chromatography to give intermediate D47.1 (30 mg, 16%).


D47.2: 2-(2-Methyl-4-(piperidin-4-yl)pyrimidin-5-yl)-1-(6-(trifluoromethyl)pyridin-2-yl)propan-2-ol hydrochloride salt

Intermediate D47.2 was made from the Boc deprotection of intermediate D47.1 using General Procedure 2.


Compound D47

Compound D47 was synthesized from intermediate D47.2 and 2,6-difluorophenyl isocyanate using General Procedure 5. 1H NMR (400 MHz, DMSO-d6) δ 8.26 (s, 1H), 8.21 (st, 1H), 7.91 (t, 1H), 7.60 (d, 1H), 7.52 (d, 1H), 7.24 (m, 1H), 7.08 (m, 2H), 5.76 (s, 1H), 4.25 (m, 2H), 3.50 (m, 3H), 2.85 (m, 2H), 2.45 (s, 3H), 1.80 (m, 4H), 1.62 (s, 3H). MS (EI) for C26H26F5N5O2. found: 536.2 (MH+). Analytical HPLC, ret. time=13.30 min, 100% purity.


Compound D48: 2,6-Difluorophenyl 4-[2-amino-5-(1-hydroxy-1-methyl-2-{[6-(trifluoromethyl)pyridin-2-yl]oxy}ethyl)pyrimidin-4-yl]piperidine-1-carboxylate

Compound D48 was made in five steps from intermediate D26.2 in the same manner that Compound D46 was made in five steps from intermediate D28.1. 1H NMR (400 MHz, CDCl3) δ 8.60 (d, 1H), 8.13 (s, 1H), 7.25 (d, 1H), 7.15 (m, 1H), 6.98 (m, 3H), 5.11 (s, 2H), 4.47 (dd, 1H), 4.37 (d, 1H), 4.36 (dd, 1H), 4.12 (d, 1H), 3.69 (t, 1H), 3.13 (t, 1H), 2.97 (t, 1H), 2.57 (bs, 1H), 3.22 (m, 2H), 1.90 (m, 2H), 1.89 (s, 3H). MS (EI) for C25H24F5N5O4. found: 554.2 (MH+). Analytical HPLC, ret. time=11.25 min, 94% purity.


Compound D49: 2-Fluorophenyl 4-[2-amino-5-(1-hydroxy-1-methyl-2-{[2-(trifluoromethyl)pyrimidin-4-yl]oxy}ethyl)pyrimidin-4-yl]piperidine-1-carboxylate

Compound D49 was made in four steps from intermediate M2.1 in the same manner that Compound D46 was made in four steps from intermediate M2.1, substituting 2,6-difluorophenyl chloroformate with 2-fluorophenyl chloroformate in the first step. 1H NMR (400 MHz, CDCl3) δ 8.63 (d, 1H), 8.26 (bs, 1H), 7.18 (m, 4H), 6.95 (d, 1H), 5.01 (s, 2H), 4.81 (d, 1H), 4.60 (d, 1H), 4.42 (dd, 2H), 3.64 (m, 1H), 3.11 (s, 1H), 2.95 (s, 1H), 2.72 (s, 1H), 2.09 (m, 2H), 1.74 (s, 3H), 1.73 (m, 2H). MS (EI) for C24H24F4N6O4. found: 537.2 (MH+). Analytical HPLC, ret. time=13.66 min, 99% purity.


Compound D50: 4-Fluorophenyl 4-[2-amino-5-(1-hydroxy-1-methyl-2-{[2-(trifluoromethyl)pyrimidin-4-yl]oxy}ethyl)pyrimidin-4-yl]piperidine-1-carboxylate

Compound D50 was made in four steps from intermediate M2.1 in the same manner that Compound D46 was made in four steps from intermediate M2.1, substituting 2,6-difluorophenyl chloroformate with 4-fluorophenyl chloroformate in the first step. 1H NMR (400 MHz, CDCl3) δ 8.64 (d, 1H), 8.24 (s, 1H), 7.14-7.01 (m, 4H), 6.95 (d, 1H), 5.17 (bs, 2H), 4.81 (d, 1H), 4.61 (d, 1H), 4.40 (t, 2H), 3.64 (t, 1H), 3.07 (t, 1H), 2.92 (t, 1H), 2.74 (bs, 1H), 2.15-1.94 (m, 2H), 1.81 (m, 2H), 1.73 (s, 3H). MS (EI) for C24H24F4N6O4. found: 537.2 (MH+). Analytical HPLC, ret. time=13.72 min, 98% purity.


Compound E12: N-(2,6-Difluorophenyl)-4-[5-(1-fluoro-1-methyl-2-{[6-(trifluoromethyl)pyridin-2-yl]oxy}ethyl)-2-methylpyrimidin-4-yl]piperidine-1-carboxamide
E12.1: tert-Butyl 4-(5-(2-fluoro-1-(6-(trifluoromethyl)pyridin-2-yloxy)propan-2-yl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate

To a solution of intermediate D24.3 (37 mg, 0.07) in DCM (1 mL) at 0° C. was added DAST (30 mg, 0.19 mmol) with stirring. The solution was warmed to RT. After 25 min, the reaction mixture was quenched with saturated aqueous NaHCO3 solution, and diluted with EtOAc. The organic phase was separated, washed with brine, dried (MgSO4), and concentrated. The crude product was purified on prep HPLC to give intermediate E12.1 (16 mg). 1H-NMR (400 MHz, CDCl3): δ 8.54 (d, 1H), 7.72 (t, 1H), 7.28 (d, 1H), 6.91 (d, 1H), 4.76 (dd, 2H), 4.23 (m, 2H), 3.29 (m, 1H), 2.79 (m, 2H), 2.67 (s, 3H), 2.04 (m, 1H), 1.92 (m, 1H), 1.86 (d, 3H), 1.65 (m, 2H), 1.47 (s, 9H). MS (EI) for C24H30F4N4O3. found: 499.3 (MH+).


E12.2: 5-(2-Fluoro-1-(6-(trifluoromethyl)pyridin-2-yloxy)propan-2-yl)-2-methyl-4-(piperidin-4-yl)pyrimidine hydrochloride salt

Intermediate E12.2 was made from the Boc deprotection of intermediate E12.1 using General Procedure 2.


Compound E12

Compound E12 was made from intermediate E12.2 and 2,6-difluorophenyl isocyanate using General Procedure 5. 1H-NMR (400 MHz, CDCl3): δ 8.55 (d, 1H), 7.74 (dd, 1H), 7.30 (d, 1H), 7.13-7.10 (m, 1H), 6.95-6.92 (m, 3H), 5.92 (s, 1H), 4.76 (m, 2H), 4.25 (m, 2H), 3.43 (m, 1H), 3.06 (m, 2H), 2.69 (s, 3H), 2.21-2.09 (m, 2H), 1.89 (d, 3H), 1.81-1.75 (m, 2H). MS (EI) for C26H25F6N5O2. found: 554.2 (MH+). Analytical HPLC, ret. time=18.8 min, 91% purity.


Compound E13: 4-[5-(1-Fluoro-1-methyl-2-{[6-(trifluoromethyl)pyridin-2-yl]oxy}ethyl)-2-methylpyrimidin-4-yl]-N-[2-fluoro-6-(trifluoromethyl)phenyl]piperidine-1-carboxamide

Compound E13 was made in a manner similar to Compound E12: 1H-NMR (400 MHz, CDCl3): δ 8.55 (d, 1H), 7.74 (dd, 1H), 7.44 (d, 1H), 7.37-7.30 (m, 3H), 6.93 (d, 1H), 6.10 (s, 1H), 4.77 (m, 2H), 4.20 (m, 2H), 3.43 (m, 1H), 3.08 (m, 2H), 2.69 (s, 3H), 2.23 (m, 1H), 2.09 (m, 1H), 1.89 (d, 3H), 1.81 (m, 2H). MS (EI) for C27H25F8N5O2. found: 604.2 (MH+). Analytical HPLC, ret. time=19.9 min, 92% purity.


Compound E14: 4-{1-[(2,6-Difluorophenyl)acetyl]piperidin-4-yl}-5-{2-[(3,5-dimethylphenyl)oxy]-1-fluoro-1-methylethyl}-2-methylpyrimidine
E14.1: tert-Butyl 4-(5-(1-(3,5-dimethylphenoxy)-2-hydroxypropan-2-yl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate

To a solution of 3,5-dimethylphenol (244 mg, 2.0 mmol) in DMF (4 mL) was added NaH (120 mg, 3 mmol, 60% in mineral oil). The resulting mixture was stirred at room temperature for 30 min, then D2.1 (1 mmol) was added. The mixture was stirred at 75° C. for 8 h, cooled to room temperature and diluted with aq. sat. NaHCO3. The crude product was extracted with EtOAc, washed with brine, and concentrated. The crude product was purified by flash column chromatography.


E14.2: 1-(3,5-Dimethylphenoxy)-2-(2-methyl-4-(piperidin-4-yl)pyrimidin-5-yl)propan-2-ol hydrochloride salt

Intermediate E14.2 was made from the Boc deprotection of intermediate E14.1 using General Procedure 2.


E14.3: 2-(2,6-Difluorophenyl)-1-(4-(5-(1-(3,5-dimethylphenoxy)-2-hydroxypropan-2-yl)-2-methylpyrimidin-4-yl)piperidin-1-yl)ethanone

Intermediate E14.3 was made from intermediate E14.2 and 2,6-difluorophenylacetic acid using General Procedure 4. 1H-NMR (400 MHz, DMSO-d6): δ 8.56 (d, 1H), 7.36 (m, 1H), 7.07 (m, 2H), 6.55 (m, 3H), 5.70 (s, 1H), 4.45 (d, 1H), 4.18 (m, 3H), 3.78 (m, 3H), 3.17 (m, 1H), 2.62 (m, 1H), 2.55 (s, 3H), 2.21 (s, 6H), 1.75 (m, 4H), 1.65 (s, 3H). MS (EI) for C29H33F2N3O3. found: 510.0 (MH+). Analytical HPLC, ret. time=17.17 min, 97% purity.


Compound E14

Compound E14 was made from intermediate E14.3 using a method analogous to that used to convert intermediate D24.3 to intermediate E12.1. 1H-NMR (400 MHz, CDCl3): δ 8.52 (s, 1H), 7.22 (m, 1H), 6.90 (dd, 2H), 6.04 (s, 1H), 6.50 (s, 2H), 4.77 (m, 1H), 4.25 (m, 1H), 4.11 (m, 1H), 3.77 (s, 2H), 3.47 (m, 1H), 3.21 (m, 1H), 2.69 (s, 3H), 2.27 (s, 6H), 2.17-2.00 (m, 2H), 1.90 (d, 3H), 1.80-1.72 (m, 2H). MS (EI) for C29H32F3N3O2. found: 512.3 (MH+). Analytical HPLC, ret. time=22.1 min, 85% purity.


The following compound was made from Compound D17 in a manner similar to the way Compound E14 was made from intermediate E14.3:


Compound E15: N-(2,6-Difluorophenyl)-4-[5-(1-fluoro-1-methyl-2-{[2-(trifluoromethyl)pyrimidin-4-yl]amino}ethyl)-2-methylpyrimidin-4-yl]piperidine-1-carboxamide

Compound E15 was made from intermediate D17 in a manner similar to the way Compound E14 was made from intermediate E14.3: 1H-NMR (400 MHz, CDCl3): δ 8.64 (br. s, 1H), 8.30 (s, 1H), 7.13 (m, 1H), 6.70-6.93 (m, 2H), 6.54 (br. s, 1H), 5.91 (s, 1H), 5.44 (br. s, 1H), 4.37-4.23 (m, 4H), 3.99 (m, 1H), 3.30 (m, 1H), 3.16-3.02 (m, 2H), 2.74 (s, 3H), 2.19 (m, 2H), 1.83-1.75 (m, 5H). MS (EI) for C25H25F6N7O. found: 554.2 (MH+). Analytical HPLC, ret. time=15.3 min, 98% purity.


Compound M4: N-(2,6-Difluorophenyl)-4-[2-methyl-5-({[6-(trifluoromethyl)pyridin-2-yl]oxy}acetyl)pyrimidin-4-yl]piperidine-1-carboxamide
M4.1: 1-(2-Methyl-4-(piperidin-4-yl)pyrimidin-5-yl)-2-(6-(trifluoromethyl)pyridin-2-yloxy)ethanone hydrochloride salt

Intermediate M4.1 was made from the Boc deprotection of intermediate D24.2 using General Procedure 2.


Compound M4

Compound M4 was made from intermediate M4.1 and 2,6-difluorophenyl isocyanate using General Procedure 5. 1H-NMR (400 MHz, CDCl3): δ 8.99 (s, 1H), 7.80 (dd, 1H), 7.32 (d, 1H), 7.12-7.05 (m, 2H), 6.93 (m, 2H), 5.89 (s, 1H), 5.41 (s, 2H), 4.19 (d, 1H), 3.39 (m, 1H), 3.02 (m, 1H), 2.07-1.97 (m, 2H), 1.81 (d, 2H). MS (EI) for C25H22F5N5O3. found: 536.2 (MH+). Analytical HPLC, ret. time=18.0 min, 98% purity.


Compound N1: N-(2,6-Difluorophenyl)-4-[5-(1-hydroxy-2-{[6-(trifluoromethyl)pyridin-2-yl]oxy}ethyl)-2-methylpyrimidin-4-yl]piperidine-1-carboxamide

To a solution of Compound M4 (60 mg, 0.12 mmol) in MeOH (1 mL) were added NH4OAc (270 mg, 3.5 mmol) and Na(CN)BH3 (20 mg, 0.32 mmol). The mixture was stirred at rt for 48 h. MeOH was removed. The residue was extracted with EtOAc. The organic phase was washed with saturated NaHCO3, brine, and dried over anhydrous Na2SO4. After removal of the solvents, the residue was purified by preparative HPLC to give Compound N1 (23 mg, 35%). 1H NMR (400 MHz, DMSO-d6) δ 8.72 (s, 1H), 8.23 (s, 1H), 7.97 (t, 1H), 7.50 (d, 1H), 7.25 (m, 1H), 7.11 (m, 3H), 5.90 (m, 1H), 5.34 (m, 1H), 4.47 (m, 2H), 4.20 (d, 1H), 3.22 (m, 1H), 2.82 (m, 2H), 2.57 (s, 3H), 1.62 (m, 4H). MS (EI) for C25H24F5N5O3. found: 538.2 (MH+). Analytical HPLC, ret. time=14.93 min, 97.8% purity.


Compound M5: 1-(2-Amino-4-{1-[(2,6-difluorophenyl)acetyl]piperidin-4-yl}pyrimidin-5-yl)-2-{[2-(trifluoromethyl)pyrimidin-4-yl]oxy}ethanone
M5.1: 2-(2,6-Difluorophenyl)-1-(4-(2-(methylthio)-5-(2-(2-(trifluoromethyl)pyrimidin-4-yloxy)acetyl)pyrimidin-4-yl)piperidin-1-yl)ethanone

Intermediate M5.1 was made from intermediate M2.1 and 2,6-difluorophenylacetic acid using General Procedure 4.


M5.2: 2-(2,6-Difluorophenyl)-1-(4-(2-(methylsulfonyl)-5-(2-(2-(trifluoromethyl)pyrimidin-4-yloxy)acetyl)pyrimidin-4-yl)piperidin-1-yl)ethanone

Intermediate M5.2 was made from intermediate M5.1 using General Procedure 6.


Compound M5

Compound M5 was synthesized from intermediate M5.2 using General Procedure 7. 1H NMR (400 MHz, CDCl3) δ 8.73 (s, 1H), 8.66 (d, 1H), 7.21 (td, 1H), 7.10 (d, 1H), 6.94-6.84 (m, 2H), 5.51 (q, 4H), 4.70 (d, 1H), 4.05 (d, 1H), 3.73 (s, 2H), 3.68-3.56 (m, 1H), 3.20 (t, 1H), 2.66 (dd, 1H), 2.11 (s, 1H), 1.89-1.72 (m, 4H). MS (EI) for C24H21F5N6O3. found: 537.1 (MH+). Analytical HPLC, ret. time=12.62 min, 99% purity.


Compound M6: 4-[2-Amino-5-({[2-(trifluoromethyl)pyrimidin-4-yl]oxy}acetyl)pyrimidin-4-yl]-N-(2,6-difluorophenyl)piperidine-1-carboxamide

Compound M6 was synthesized from intermediate D38.1 using General Procedure 7. 1H NMR (400 MHz, CDCl3) δ 8.74 (s, 1H), 8.67 (d, 1H), 7.14-7.05 (m, 2H), 6.97-6.89 (m, 2H), 5.87 (s, 1H), 5.52 (m, 4H), 4.19 (d, 2H), 3.67-3.53 (m, 1H), 3.00 (dd, 2H), 1.98-1.74 (m, 4H). MS (EI) for C23H20F5N7O3. found: 538.1 (MH+). Analytical HPLC, ret. time=15.76 min, 97% purity.


Compound M7: N-(2,6-Difluorophenyl)-4-{2-[(2-fluoroethyl)amino]-5-({[2-(trifluoromethyl)pyrimidin-4-yl]oxy}acetyl)pyrimidin-4-yl}piperidine-1-carboxamide

Compound M7 was synthesized from intermediate D38.1 using a method analogous to that used to convert intermediate B53.1 to Compound B60.1H NMR (400 MHz, CDCl3) δ 8.73 (s, 1H), 8.66 (d, 1H), 7.10 (d, 2H), 6.93 (t, 2H), 5.87 (s, 1H), 5.85 (s, 1H), 5.52 (s, 2H), 4.69 (t, 1H), 4.58 (t, 1H), 4.18 (d, 2H), 3.95-3.77 (m, 2H), 3.65 (bs, 1H), 3.02 (t, 2H), 1.83 (m, 4H). MS (EI) for C25H23F6N7O3. found: 584.1 (MH+). Analytical HPLC, ret. time=17.30 min, 98% purity.


Compound N2: 4-[2-Amino-5-(1-hydroxy-2-{[2-(trifluoromethyl)pyrimidin-4-yl]oxy}ethyl)pyrimidin-4-yl]-N-(2,6-difluorophenyl)piperidine-1-carboxamide

To a solution of Compound M6 (55.9 mg, 0.104 mmol) in MeOH (2 mL) was added NaBH4 (12 mg, 0.312 mmol) at 0° C. The reaction mixture was stirred at 0° C. for 15 min. The mixture was monitored by LC/MS and quenched with water at 0° C. upon completion. The resulting mixture was diluted with EtOAc, washed with water, brine, dried over magnesium sulfate and concentrated in vacuo to give a crude product, which was purified by preparative HPLC to give Compound N2 (17 mg, 30.3%). 1H NMR (400 MHz, CDCl3) δ 8.64 (d, 1H), 8.41 (s, 1H), 7.12 (dt, 1H), 7.03-6.89 (m, 3H), 5.90 (s, 1H), 5.32 (dd, 1H), 5.15 (s, 2H), 4.69 (dd, 1H), 4.51 (dd, 1H), 4.23 (d, 2H), 3.07 (dt, 3H), 2.19-1.96 (m, 2H), 1.87-1.69 (m, 2H). MS (EI) for C23H22F5N7O3. found: 540.2 (MH+). Analytical HPLC, ret. time=11.30 min, 99% purity.


Compound N3: 4-[2-Amino-5-(1-hydroxy-2-{[6-(trifluoromethyl)pyridin-2-yl]oxy}ethyl)pyrimidin-4-yl]-N-(2,6-difluorophenyl)piperidine-1-carboxamide
N3.1: 1-(2-(Methylthio)-4-(piperidin-4-yl)pyrimidin-5-yl)-2-(6-(trifluoromethyl)pyridin-2-yloxy)ethanone hydrochloride salt

Intermediate N3.1 was made from the Boc deprotection of intermediate D26.2 using General Procedure 2.


N3.2: N-(2,6-Difluorophenyl)-4-(2-(methylthio)-5-(2-(6-(trifluoromethyl)pyridin-2-yloxy)acetyl)pyrimidin-4-yl)piperidine-1-carboxamide

Intermediate N3.2 was made from intermediate N3.1 and 2,6-difluorophenyl isocyanate using General Procedure 5.


N3.3: N-(2,6-Difluorophenyl)-4-(2-(methylsulfonyl)-5-(2-(6-(trifluoromethyl)pyridin-2-yloxy)acetyl)pyrimidin-4-yl)piperidine-1-carboxamide

Intermediate N3.3 was made from intermediate N3.2 using General Procedure 6.


N3.4: 4-(2-Amino-5-(2-(6-(trifluoromethyl)pyridin-2-yloxy)acetyl)pyrimidin-4-yl)-N-(2,6-difluorophenyl)piperidine-1-carboxamide

Intermediate N3.4 was made from intermediate N3.3 using General Procedure 7.


Compound N3

Compound N3 was made from intermediate N3.4 using a method analogous to that used to convert Compound M6 to compound N2. 1H NMR (400 MHz, CDCl3) δ 8.43 (s, 1H), 7.80 (t, 1H), 7.35 (d, 1H), 7.15-7.06 (m, 1H), 7.01 (t, 1H), 6.98-6.89 (m, 2H), 5.89 (s, 1H), 5.32 (dd, 1H), 5.03 (s, 2H), 4.63 (dd, 1H), 4.42 (dd, 1H), 4.22 (d, 2H), 3.07 (m, 3H), 2.16-1.94 (m, 2H), 1.86-1.70 (m, 2H). MS (EI) for C24H23F5N6O3. found: 539.2 (MH+). Analytical HPLC, ret. time=9.76 min, 99% purity.


Compound N4: N-(2,6-Difluorophenyl)-4-[5-(1-hydroxy-2-{[6-(trifluoromethyl)pyridin-2-yl]oxy}ethyl)-2-(methyloxy)pyrimidin-4-yl]piperidine-1-carboxamide
N4.1: N-(2,6-Difluorophenyl)-4-(2-methoxy-5-(2-(6-(trifluoromethyl)pyridin-2-yloxy)acetyl)pyrimidin-4-yl)piperidine-1-carboxamide

Intermediate N4.1 was made from intermediate N3.3 using a method analogous to that used to convert intermediate D29.1 to Compound D40.


Compound N4

Compound N4 was made from intermediate N4.1 using a method analogous to that used to convert Compound M6 to compound N2. 1H NMR (400 MHz, CDCl3) δ 8.67 (s, 1H), 7.81 (t, 1H), 7.36 (d, 1H), 7.12 (s, 1H), 7.05-6.98 (m, 1H), 6.94 (t, 2H), 5.88 (s, 1H), 5.39 (dd, 1H), 4.67 (dd, 1H), 4.44 (dd, 1H), 4.23 (m, 2H), 4.03 (s, 3H), 3.26 (d, 1H), 3.20 (m, 1H), 3.06 (m, 2H), 2.05 (m, 2H), 1.82 (m, 2H). MS (EI) for C25H24F5N5O4. found: 554.1 (MH+). Analytical HPLC, ret. time=18.02 min, 99% purity.


Compound M8: N-(2,6-Difluorophenyl)-4-[2,6-dimethyl-5-({[2-(trifluoromethyl)pyrimidin-4-yl]oxy}acetyl)pyrimidin-4-yl]piperidine-1-carboxamide
M8.1: tert-Butyl 4-(5-(1-hydroxyethyl)-2,6-dimethylpyrimidin-4-yl)piperidine-1-carboxylate

To a solution of intermediate B46.2 (870 mg, 2.7 mmol) in dry THF (25 mL) was added MeMgBr (5.0 mL, 1.4M in 1:3 THF:Toluene, 7.0 mmol). The resulting mixture was stirred at room temperature and monitored by LC-MS until complete. Upon completion, the reaction mixture was diluted with saturated aqueous NH4Cl and extracted with EtOAc (3×). The combined organic extractions were washed with saturated aqueous NaCl (1×), dried (Na2SO4) and concentrated in vacuo to give intermediate M8.1 which was used as is in subsequent reactions. MS (EI) for C18H29N3O3. found: 336.3 (MH+).


F9.2: tert-Butyl 4-(5-acetyl-2,6-dimethylpyrimidin-4-yl)piperidine-1-carboxylate

Intermediate M8.2 was made from intermediate M8.1 using a method analogous to the oxidation of intermediate B46.1 to intermediate B46.2.


M8.3: tert-Butyl 4-(5-(2-bromoacetyl)-2,6-dimethylpyrimidin-4-yl)piperidine-1-carboxylate

Intermediate M8.3 was made from intermediate M8.2 using a method analogous to the conversion of intermediate C70.2 to intermediate C70.3.


M8.4: tert-Butyl 4-(2,6-dimethyl-5-(2-(2-(trifluoromethyl)pyrimidin-4-yloxy)acetyl)pyrimidin-4-yl)piperidine-1-carboxylate

Intermediate M8.4 was made from intermediate M8.3 and 2-(trifluoromethyl)pyrimidin-4-ol using a method analogous to the synthesis of intermediate D24.2 from intermediate D24.1.


M8.5: 1-(2,4-Dimethyl-6-(piperidin-4-yl)pyrimidin-5-yl)-2-(2-(trifluoromethylpyrimidin-4-yloxy)ethanone hydrochloride salt

Intermediate M8.5 was made from the Boc deprotection of intermediate M8.4 using General Procedure 2.


Compound M8

Compound M8 was made from intermediate M8.5 and 2,6-difluorophenyl isocyanate using General Procedure 5. 1H-NMR (400 MHz, CDCl3): δ 8.71 (d, 1H), 7.12 (m, 2H), 6.94 (m, 2H), 5.90 (s, 1H), 5.42 (s, 2H), 4.23 (m, 2H), 3.05 (m, 2H), 2.74 (m, 1H), 2.71 (s, 3H), 2.58 (s, 3H), 2.13 (m, 2H), 1.80 (m, 2H). MS (EI) for C25H23F5N6O3. found: 551.2 (MH+). Analytical HPLC, ret. time=17.00 min, 98% purity.


Compound N5: N-(2,6-Difluorophenyl)-4-[5-(1-hydroxy-2-{[2-(trifluoromethyl)pyrimidin-4-yl]oxy}ethyl)-2,6-dimethylpyrimidin-4-yl]piperidine-1-carboxamide

Compound N5 was made from Compound M8 using a method analogous to that used to convert Compound M6 to compound N2. 1H-NMR (400 MHz, CDCl3): δ 8.64 (d, 1H), 7.11 (m, 1H), 6.98 (d, 1H) 6.93 (m, 2H), 5.95 (s, 1H), 5.28 (m, 1H), 4.70 (m, 2H), 4.20 (m, 2H), 3.53 (m, 1H), 3.28 (m, 1H), 3.03 (m, 2H), 2.64 (s, 3H), 2.63 (s, 3H), 2.18 (m, 1H), 2.03 (m, 1H), 1.85-1.65 (m, 2H). MS (EI) for C25H25F5N6O3. found: 553.2 (MH+). Analytical HPLC, ret. time=12.22 min, 99% purity.


Compound M9: N-(2,6-Difluorophenyl)-4-[5-(1-hydroxy-2-{[2-(trifluoromethyl)pyrimidin-4-yl]oxy}ethyl)-2,6-dimethylpyrimidin-4-yl]piperidine-1-carboxamide
M9.1: tert-Butyl 4-(2,6-dimethyl-5-(2-(6-(trifluoromethyl)pyridin-2-yloxy)acetyl)pyrimidin-4-yl)piperidine-1-carboxylate

Intermediate M9.1 was made from intermediate M8.3 using a method analogous to the synthesis of intermediate D24.2 from intermediate D24.1.


M9.2: 1-(2,4-Dimethyl-6-(piperidin-4-yl)pyrimidin-5-yl)-2-(6-(trifluoromethyl)pyridin-2-yloxy)ethanone hydrochloride salt

Intermediate M9.2 was made from the Boc deprotection of intermediate M9.1 using General Procedure 2.


Compound M9

Compound M9 was made from intermediate M9.2 and 2,6-difluorophenyl isocyanate using General Procedure 5. 1H-NMR (400 MHz, CDCl3): δ 7.83 (t, 1H), 7.37 (d, 1H), 7.11 (m, 2H), 6.94 (m, 2H), 5.90 (s, 1H), 5.38 (s, 2H), 4.21 (m, 2H), 3.03 (m, 2H), 2.77 (m, 1H), 2.70 (s, 3H), 2.57 (s, 3H), 2.11 (m, 2H), 1.78 (m, 2H). MS (EI) for C26H24F5N5O3. found: 550.2 (MH+). Analytical HPLC, ret. time=14.57 min, 99% purity.


Compound N6: N-(2,6-Difluorophenyl)-4-[5-(1-hydroxy-2-{[6-(trifluoromethyl)pyridin-2-yl]oxy}ethyl)-2,6-dimethylpyrimidin-4-yl]piperidine-1-carboxamide

Compound N6 was made from Compound M4 using a method analogous to that used to convert Compound M6 to compound N2. 1H-NMR (400 MHz, CDCl3): δ 7.83 (t, 1H), 7.36 (d, 1H), 7.11 (m, 1H), 7.05 (d, 1H), 6.94 (m, 2H), 5.93 (s, 1H), 5.60 (dd, 1H), 4.70 (dd, 1H), 4.60 (dd, 1H), 4.24 (m, 2H), 3.55 (m, 1H), 3.38 (m, 1H), 3.03 (m, 2H), 2.65 (s, 3H), 2.64 (s, 3H), 2.25-2.00 (m, 2H), 1.87-1.70 (m, 2H). MS (EI) for C26H26F5N5O3. found: 552.2 (MH+). Analytical HPLC, ret. time=10.43 min, 99% purity.


Compound M10: 4-[2-Amino-6-methyl-5-({[2-(trifluoromethyl)pyrimidin-4-yl]oxy}acetyl)pyrimidin-4-yl]-N-(2,6-difluorophenyl)piperidine-1-carboxamide
M10.1: tert-Butyl 4-(6-methyl-2-(methylthio)-5-(2-(2-(trifluoromethyl)pyrimidin-4-yloxy)acetyl)pyrimidin-4-yl)piperidine-1-carboxylate

Intermediate M10.1 was made from intermediate C70.3 and 2-(trifluoromethyl)pyrimidin-4-ol using a method analogous to the synthesis of intermediate D24.2 from intermediate D24.1.


M10.2: 1-(4-Methyl-2-(methlythio)-6-(piperidin-4-yl)pyrimidin-5-yl)-2-(2-(trifluoromethyl)pyrimidin-4-yloxy)ethanone hydrochloride salt

Intermediate M10.2 was made from the Boc deprotection of intermediate M10.1 using General Procedure 2.


M10.3: N-(2,6-Difluorophenyl)-4-(6-methyl-2-(methylthio)-5-(2-(2-(trifluoromethyl)pyrimidin-4-yloxy)acetyl)pyrimidin-4-yl)piperidine-1-carboxamide

Intermediate M10.3 was made from intermediate M10.2 and 2,6-difluorophenyl isocyanate using General Procedure 5.


M10.4: N-(2,6-Difluorophenyl)-4-(6-methyl-2-(methylsulfonyl)-5-(2-(2-(trifluoromethyl)pyrimidin-4-yloxy)acetyl)pyrimidin-4-yl)piperidine-1-carboxamide

Intermediate M10.4 was made from intermediate M10.3 using General Procedure 6.


Compound M10

Compound M10 was made from intermediate M10.4 using General Procedure 7. 1H-NMR (400 MHz, CDCl3): δ 8.68 (d, 1H), 7.09 (m, 2H), 6.93 (m, 2H), 5.84 (s, 1H), 5.39 (s, 2H), 5.20 (br s, 2H), 4.20 (m, 2H), 3.01 (m, 2H), 2.69 (m, 1H), 2.46 (s, 3H), 2.05 (m, 2H), 1.89 (m, 2H). MS (EI) for C24H22F5N7O3. found: 552.2 (MH+). Analytical HPLC, ret. time=14.44 min, 97% purity.


Compound N7: 4-[2-amino-5-(1-hydroxy-2-{[2-(trifluoromethyl)pyrimidin-4-yl]oxy}ethyl)-6-methylpyrimidin-4-yl]-N-(2,6-difluorophenyl)piperidine-1-carboxamide

Compound N7 was made from Compound M10 using a method analogous to that used to convert Compound M6 to compound N2. 1H NMR (400 MHz, CDCl3) δ 8.64 (d, 1H), 7.15-7.07 (m, 1H), 6.99 (d, 1H), 6.93 (t, 2H), 5.90 (s, 1H), 5.50 (dd, 1H), 5.01 (s, 2H), 4.73 (dd, 1H), 4.63 (dd, 1H), 4.22 (t, 2H), 3.41 (t, 1H), 3.03 (td, 2H), 2.59 (bs, 1H), 2.51 (s, 3H), 2.17-1.93 (m, 4H), 1.75 (m, 4H). MS (EI) for C24H24F5N7O3. found: 554.2 (MH+). Analytical HPLC, ret. time=12.37 min, 99% purity.


Compound N8: N-(2,6-Difluorophenyl)-4-[5-(1-hydroxy-2-{[2-(trifluoromethyl)pyrimidin-4-yl]oxy}ethyl)-6-methyl-2-(methyloxy)pyrimidin-4-yl]piperidine-1-carboxamide
N8.1: N-(2,6-Difluorophenyl)-4-(2-methoxy-6-methyl-5-(2-(2-(trifluoromethyl)pyrimidin-4-yloxy)acetyl)pyrimidin-4-yl)piperidine-1-carboxamide

Intermediate N8.1 was made from intermediate M10.4 using a method analogous to that used to convert intermediate D29.1 to Compound D40.


Compound N8

Compound N8 was made from intermediate N8.1 using a method analogous to that used to convert Compound M6 to compound N2. 1H NMR (400 MHz, CDCl3) δ 8.65 (d, 1H), 7.15-7.07 (m, 1H), 6.99 (d, 1H), 6.98-6.89 (m, 2H), 5.89 (s, 1H), 5.58 (d, 1H), 4.75 (dd, 1H), 4.66 (dd, 1H), 4.24 (td, 2H), 4.00 (s, 3H), 3.51 (t, 1H), 3.15-2.96 (m, 2H), 2.66 (s, 1H), 2.62 (s, 3H), 2.20 (dt, 1H), 2.08 (dt, 1H), 1.84 (d, 1H), 1.76 (d, 1H). MS (EI) for C25H25F5N6O4. found: 569.2 (MH+). Analytical HPLC, ret. time=15.82 min, 97% purity.


Compound M11: 4-[2-Amino-6-methyl-5-({[6-(trifluoromethyl)pyridin-2-yl]oxy}acetyl)pyrimidin-4-yl]-N-(2,6-difluorophenyl)piperidine-1-carboxamide
M11.1: tert-Butyl 4-(6-methyl-2-(methylthio)-5-(2-(6-(trifluoromethyl)pyridin-2-yloxy)acetyl)pyrimidin-4-yl)piperidine-1-carboxylate

Intermediate M11.1 was made from intermediate C70.3 using a method analogous to the synthesis of intermediate D24.2 from intermediate D24.1.


M11.2: 1-(4-Methyl-2-(methylthio)-6-(piperidin-4-yl)pyrimidin-5-yl)-2-(6-(trifluoromethyl)pyridin-2-yloxy)ethanone hydrochloride salt

Intermediate M11.2 was made from the Boc deprotection of intermediate M11.1 using General Procedure 2.


M11.3: N-(2,6-Difluorophenyl)-4-(6-methyl-2-(methylthio)-5-(2-(6-(trifluoromethyl)pyridin-2-yloxy)acetyl)pyrimidin-4-yl)piperidine-1-carboxamide

Intermediate M11.3 was made from intermediate M11.2 and 2,6-difluorophenyl isocyanate using General Procedure 5.


M11.4: N-(2,6-Difluorophenyl)-4-(6-methyl-2-(methylsulfonyl)-5-(2-(6-(trifluoromethyl)pyridin-2-yloxy)acetyl)pyrimidin-4-yl)piperidine-1-carboxamide

Intermediate M11.4 was made from intermediate M11.3 using General Procedure 6.


Compound M11

Compound M11 was made from intermediate M11.4 using General Procedure 7. 1H-NMR (400 MHz, CDCl3): δ 7.81 (t, 1H), 7.34 (d, 1H), 7.10 (m, 2H), 6.93 (m, 2H), 5.88 (s, 1H), 5.32 (s, 2H), 5.25 (m, 2H), 4.19 (m, 2H), 3.01 (m, 2H), 2.72 (m, 1H), 2.47 (s, 3H), 2.00 (m, 2H), 1.79 (m, 2H). MS (EI) for C25H23F5N6O3. found: 551.2 (MH+). Analytical HPLC, ret. time=15.71 min, 99% purity.


Compound M12: 4-[2-(Acetylamino)-6-methyl-5-({[6-(trifluoromethyl)pyridin-2-yl]oxy}acetyl)pyrimidin-4-yl]-N-(2,6-difluorophenyl)piperidine-1-carboxamide

Compound M12 was made from Compound M11 using a method analogous to that used to convert Compound D30 to Compound D31. 1H NMR (400 MHz, CDCl3) δ 7.93 (s, 1H), 7.82 (t, 1H), 7.37 (d, 1H), 7.16-7.06 (m, 2H), 6.98-6.89 (m, 2H), 5.89 (s, 1H), 5.34 (s, 2H), 4.20 (d, 2H), 3.03 (t, 2H), 2.80 (dd, 1H), 2.58 (d, 6H), 2.01 (qd, 2H), 1.80 (d, 2H). MS (EI) for C27H25F5N6O4. found: 593.1 (MH+). Analytical HPLC, ret. time=13.72 min, 99% purity.


Compound N9: 4-[2-Amino-5-(1-hydroxy-2-{[6-(trifluoromethyl)pyridin-2-yl]oxy}ethyl)-6-methylpyrimidin-4-yl]-N-(2,6-difluorophenyl)piperidine-1-carboxamide

Compound N9 was made from Compound M11 using a method analogous to that used to convert Compound M6 to compound N2. 1H-NMR (400 MHz, CDCl3): δ 7.73 (t, 1H), 7.28 (d, 1H), 7.03 (m, 1H), 6.96 (d, 1H), 6.86 (t, 2H), 5.81 (s, 1H), 5.43 (dd, 1H), 4.86 (s, 2H), 4.61 (dd, 1H), 4.49 (dd, 1H), 4.15 (t, 2H), 3.37 (m, 1H), 3.00-2.90 (m, 2H), 2.45 (s, 3H), 2.05-1.88 (m, 2H), 1.76-1.64 (m, 2H). MS (EI) for C25H25F5N6O3. found: 553.2 (MH+). Analytical HPLC, ret. time=13.39 min, 98% purity.


Compound N10: 4-[2-(Acetylamino)-5-(1-hydroxy-2-{1-[6-(trifluoromethyl)pyridin-2-yl]oxy}ethyl)-6-methylpyrimidin-4-yl]-N-(2,6-difluorophenyl)piperidine-1-carboxamide

Compound N10 was made from Compound N10 using a method analogous to that used to convert Compound D30 to Compound D31. 1H NMR (400 MHz, CDCl3) δ 7.82 (dd, 2H), 7.37 (d, 1H), 7.16-7.07 (m, 1H), 7.04 (d, 1H), 6.94 (t, 2H), 5.92 (s, 1H), 5.56 (d, 1H), 4.64 (ddd, 2H), 4.23 (t, 2H), 3.57 (t, 1H), 3.27 (s, 1H), 3.12-2.95 (m, 2H), 2.61 (d, 6H), 2.17-1.91 (m, 2H), 1.87 (d, 1H), 1.75 (d, 1H). MS (EI) for C27H27F5N6O4. found: 595.1 (MH+). Analytical HPLC, ret. time=11.56 min, 99% purity.


Compound N11: 1-[2-(Acetylamino)-4-(1-{[(2,6-difluorophenyl)amino]carbonyl}piperidin-4-yl)-6-methylpyrimidin-5-yl]-2-{[6-(trifluoromethyl)pyridin-2-yl]oxy}ethyl acetate

Compound N11 was isolated as a side product generated from the reaction that made Compound N10. 1H NMR (400 MHz, CDCl3) δ 7.85 (s, 1H), 7.77 (t, 1H), 7.33 (d, 1H), 7.18-7.07 (m, 1H), 6.94 (t, 3H), 6.56 (dd, 1H), 5.92 (s, 1H), 4.77 (ddd, 2H), 4.26 (dd, 2H), 3.45 (m, 1H), 3.08 (dt, 2H), 2.69 (s, 3H), 2.59 (s, 3H), 2.02 (s, 3H), 2.13-1.94 (m, 2H), 1.87 (d, 1H), 1.72-1.63 (m, 1H). MS (EI) for C29H29F5N6O5. found: 637.1 (MH+). Analytical HPLC, ret. time=18.27 min, 95% purity.


Compound N12: 4-[2-amino-5-(1-hydroxy-2-{[2-(trifluoromethyl)pyrimidin-4-yl]amino}ethyl)pyrimidin-4-yl]-N-(2,6-difluorophenyl)piperidine-1-carboxamide
N12.1: tert-Butyl 4-(5-(2-azidoacetyl)-2-(methylthio)pyrimidin-4-yl)piperidine-1-carboxylate

Intermediate N12.1 was synthesized from intermediate D26.1 using a method analogous to the conversion of intermediate C70.3 to intermediate C70.4.


N12.2: tert-Butyl 4-(5-(2-azido-1-hydroxyethyl)-2-(methylthio)pyrimidin-4-yl)piperidine-1-carboxylate

Intermediate N12.2 was synthesized from intermediate N12.1 using a method analogous to the conversion of Compound M6 to compound N2.


N12.3: tert-Butyl 4-(5-(2-amino-1-hydroxyethyl)-2-(methylthio)pyrimidin-4-yl)piperidine-1-carboxylate

Intermediate N12.3 was synthesized from intermediate N12.2 using a method analogous to that used to convert intermediate C68.2 to intermediate C68.3.


N12.4: tert-Butyl 4-(5-(1-hydroxy-2-(2-(trifluoromethyl)pyrimidin-4-ylamino)ethyl)-2-(methylthio)pyrimidin-4-yl)piperidine-1-carboxylate

Intermediate N12.4 was synthesized from intermediate N12.3 using a method analogous to that used to synthesize intermediate D17.3 from intermediate D17.2.


N12.5: tert-Butyl 4-(5-(1-hydroxy-2-(2-(trifluoromethyl)pyrimidin-4-ylamino)ethyl)-2-(methylsulfonyl)pyrimidin-4-yl)piperidine-1-carboxylate

Intermediate N12.5 was made from intermediate N12.4 using General Procedure 6.


N12.6: tert-Butyl 4-(2-amino-5-(1-hydroxy-2-(2-(trifluoromethyl)pyrimidin-4-ylamino)ethyl)pyrimidin-4-yl)piperidine-1-carboxylate

To a 48 mL sealed-tube were added intermediate N12.5 (80.0 mg, 0.146 mmol), dioxane (4 mL) and conc. ammonium hydroxide (2 mL) at room temperature. The tube was sealed and heated at 100° C. overnight. After completion, the reaction mixture was diluted with 10 mL of water and extracted with EtOAc (3×10 mL). The combined organic layers were dried over anhydrous magnesium sulfate and concentrated in vacuo to give the desired crude intermediate N12.6 (50 mg, 71%); MS (EI) for C21H28F3N7O3. found 484.2 (MH+).


N12.7: 1-(2-Amino-4-(piperidin-4-yl)pyrimidin-5-yl)-2-(2-(trifluoromethyl)pyrimidin-4-ylamino)ethanol hydrochloride salt

Intermediate N12.7 was synthesized from the Boc deprotection of intermediate N12.6 using General Procedure 2.


Compound N12

Compound N12 was synthesized from intermediate N12.7 and 2,6-difluorophenyl isocyanate using General Procedure 5. 1H NMR (400 MHz, CDCl3) δ 8.39 (s, 1H), 8.28 (d, 1H), 7.11 (dd, 1H), 6.96 (dd, 2H), 6.52 (d, 1H), 5.92 (s, 1H), 5.70 (bs, 1H), 5.17 (d, 1H), 5.04 (s, 2H), 4.21 (m, 2H), 4.04-3.86 (bs, 1H), 3.44 (s, 1H), 3.14-2.96 (m, 3H), 2.17-1.93 (m, 2H), 1.75 (d, 2H). MS (EI) for C23H23F5N8O2. found: 539.2 (MH+). Analytical HPLC, ret. time=7.82 min, 99% purity.


Compound M13: 1-(2-Amino-4-{1-[(2,6-difluorophenyl)carbonyl]piperidin-4-yl}pyrimidin-5-yl)-2-{[2-(trifluoromethyl)pyrimidin-4-yl]oxy}ethanone

Compound M13 was made in three steps from intermediate M2.1 in the same manner that Compound M5 was made in three steps from intermediate M2.1, substituting 2,6-difluorobenzoic acid for 2-(2,6-difluorophenyl)acetic acid in the first step. 1H NMR (400 MHz, CDCl3) δ 8.73 (s, 1H), 8.66 (d, 1H), 7.33 (m, 2H), 7.10 (d, 1H), 6.95 (m, 2H), 5.50 (m, 4H), 4.88 (dd, 1H), 3.60 (m, 2H), 3.16 (dt, 1H), 2.87 (m, 1H), 1.88 (m, 2H), 1.73 (m, 2H). MS (EI) for C23H19F5N6O3. found: 523.2 (MH+). Analytical HPLC, ret. time=12.50 min, 98% purity.


Compound N13: 2,6-Difluorophenyl 4-[2-amino-5-(1-hydroxy-2-{[2-(trifluoromethyl)pyrimidin-4-yl]oxy}ethyl)pyrimidin-4-yl]piperidine-1-carboxylate

Compound N13 was made in four steps from intermediate M2.1 in the same manner that Compound N2 was made in four steps from intermediate M2.1, substituting 2,6-difluorophenyl chloroformate for 2,6-difluorophenyl isocyanate in the first step and using standard reaction conditions typical with chloroformates such as those elaborated on in the synthesis of Compound A119 from intermediate A116.3. 1H NMR (400 MHz, CDCl3) δ 8.65 (d, 1H), 8.42 (s, 1H), 7.15 (dq, 1H), 7.03-6.92 (m, 3H), 5.33 (d, 1H), 5.08 (s, 2H), 4.69 (d, 1H), 4.56-4.41 (m, 2H), 4.36 (bs, 1H), 3.10 (m, 3H), 2.61 (s, 1H), 2.19-1.96 (m, 2H), 1.86-1.71 (m, 2H). MS (EI) for C23H21F5N6O4. found: 541.2 (MH+). Analytical HPLC, ret. time=13.72 min, 99% purity.


Compound M14: 2-Fluorophenyl 4-[2-amino-5-({[6-(trifluoromethyl)pyridin-2-yl]oxy}acetyl)pyrimidin-4-yl]piperidine-1-carboxylate

Compound M14 was made in three steps from intermediate N3.1 in the same manner that intermediate N3.4 was made in three steps from intermediate N3.1, substituting 2-fluorophenyl chloroformate for 2,6-difluorophenyl isocyanate in the first step and using standard reaction conditions typical with chloroformates such as those elaborated on in the synthesis of Compound A119 from intermediate A116.3. 1H NMR (400 MHz, CDCl3) δ 8.74 (s, 1H), 8.59 (d, 1H), 7.24-7.09 (m, 5H), 7.01-6.95 (m, 1H), 5.56 (s, 2H), 5.24 (s, 2H), 4.43 (d, 1H), 4.34 (d, 1H), 3.77-3.65 (m, 1H), 3.12 (t, 1H), 2.97 (t, 1H), 1.91 (dd, 2H), 1.80 (d, 2H). MS (EI) for C24H21F4N5O4. found: 520.2 (MH+). Analytical HPLC, ret. time=18.06 min, 95% purity.


Compound N14: N-(2,6-Difluorophenyl)-4-[5-(1,1-difluoro-2-{[6-(trifluoromethyl)pyridin-2-yl]oxy}ethyl)-2-methylpyrimidin-4-yl]piperidine-1-carboxamide
N14.1: tert-Butyl 4-(5-(1,1-difluoro-2-(6-(trifluoromethyl)pyridin-2-yloxy)ethyl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate

To a stirred solution of tert-butyl intermediate D24.2 (50 mg, 0.10 mmol) in DCM (1 mL) was added bis(2-methoxyethyl)aminosulfur trifluoride (92 mg, 0.42 mmol). The reaction mixture was heated at 65° C. in a sealed tube with stirring for 21 h. The resulting mixture was cooled to 0° C. and partitioned between EtOAc and saturated aqueous NaHCO3. The aqueous layer was extracted with EtOAc. The combined organic portions were washed with brine, dried (MgSO4), filtered, and concentrated in vacuo. The residue was purified on prep. HPLC to give intermediate N14.1 (24 mg). 1H-NMR (400 MHz, CDCl3): δ 8.69 (s, 1H), 7.75 (t, 1H), 7.32 (d, 1H), 6.93 (d, 1H), 4.89 (t, 2H), 4.23 (m, 2H), 3.18 (m, 1H), 2.80 (m, 2H), 2.70 (s, 3H), 1.98 (m, 2H), 1.68 (m, 2H), 1.47 (s, 9H). MS (EI) for C23H27F5N4O3. found: 503.2 (MH+).


N14.2: 5-(1,1-Difluoro-2-(6-(trifluoromethyl)pyridin-2-yloxy)ethyl)-2-methyl-4-(piperidin-4-yl)pyrimidine hydrochloride salt

Intermediate N14.2 was synthesized from the Boc deprotection of intermediate N14.1 using General Procedure 2.


Compound N14

Compound N14 was synthesized from intermediate N14.2 and 2,6-difluorophenyl isocyanate using General Procedure 5. 1H-NMR (400 MHz, CDCl3): δ 8.72 (s, 1H), 7.77 (dd, 1H), 7.34 (d, 1H), 7.11 (m, 1H), 6.96-6.92 (m, 3H), 5.90 (s, 1H), 4.92 (t, 2H), 4.25 (d, 2H), 3.30 (m, 1H), 3.07 (t, 2H), 2.73 (s, 3H), 2.18-2.09 (m, 2H), 1.78 (d, 2H). MS (EI) for C25H22F7N5O2. found: 558.2 (MH+). Analytical HPLC, ret. time=19.9 min, 97% purity.


Compound N15: 4-[5-(1,1-Difluoro-2-{[6-(trifluoromethyl)pyridin-2-yl]oxy}ethyl)-2-methylpyrimidin-4-yl]-N-[2-fluoro-6-(trifluoromethyl)phenyl]piperidine-1-carboxamide

Compound N15 was made in a manner similar to Compound N14. 1H-NMR (400 MHz, CDCl3): δ 8.72 (s, 1H), 7.77 (dd, 1H), 7.44 (d, 1H), 7.37-7.30 (m, 3H), 6.95 (d, 1H), 6.10 (s, 1H), 4.92 (dd, 2H), 4.21 (d, 2H), 3.31 (m, 1H), 3.08 (m, 2H), 2.73 (s, 3H), 2.19-2.09 (m, 2H), 1.79 (d, 2H). MS (EI) for C26H22F9N5O2. found: 608.2 (MH+). Analytical HPLC, ret. time=21.2 min, 98% purity.


Compound N16: 4-[2-Amino-5-(1,1-difluoro-2-{[6-(trifluoromethyl)pyridin-2-yl]oxy}ethyl)pyrimidin-4-yl]-N-(2,6-difluorophenyl)piperidine-1-carboxamide
N16.1: tert-Butyl 4-(5-(1,1-difluoro-2-(6-(trifluoromethyl)pyridin-2-yloxy)ethyl)-2-(methylthio)pyrimidin-4-yl)piperidine-1-carboxylate

Intermediate N16.1 was synthesized from intermediate D26.2 using a method analogous to that used to synthesize intermediate N14.1 from intermediate D24.2.


N16.2: 5-(1,1-Difluoro-2-(6-(trifluoromethyl)pyridin-2-yloxy)ethyl)-2-(methylthio-4-(piperidin-4-yl)pyrimidine hydrochloride salt

Intermediate N16.2 was synthesized from the Boc deprotection of intermediate N16.1 using General Procedure 2.


N16.3: 4-(5-(1,1-Difluoro-2-(6-(trifluoromethyl)pyridin-2-yloxy)ethyl)-2-(methylthio)pyrimidin-4-yl)-N-(2,6-difluorophenyl)piperidine-1-carboxamide

Intermediate N16.3 was synthesized from intermediate N16.2 and 2,6-difluorophenyl isocyanate using General Procedure 5.


N16.4: 4-(5-(1,1-Difluoro-2-(6-(trifluoromethyl)pyridin-2-yloxy)ethyl)-2-(methylsulfonyl)pyrimidin-4-yl)-N-(2,6-difluorophenyl)piperidine-1-carboxamide

Intermediate N16.4 was synthesized from intermediate N16.3 using General Procedure 6.


Compound N16

Compound N16 was synthesized from intermediate N16.4 using a method analogous to that used to convert intermediate C69.6 to Compound C69. 1H-NMR (400 MHz, CDCl3): δ 8.39 (s, 1H), 7.78 (t, 2H), 7.34 (d, 1H), 7.12 (m, 1H), 6.98 (d, 1H), 6.94 (t, 2H), 5.91 (s, 1H), 5.19 (s, 2H), 4.88 (t, 2H), 4.24 (d, 2H), 3.20 (tt, 1H), 3.05 (td, 2H), 2.04 (qd, 2H), 1.79 (m, 2H). MS (EI) for C24H21F7N6O2. found 559.0 (MH+). Analytical HPLC, ret. time=19.772 min, 95% purity.


Compound N17: 4-[2-Amino-5-(1,1-difluoro-2-{[2-(trifluoromethyl)pyrimidin-4-yl]oxy}ethyl)pyrimidin-4-yl]-N-(2,6-difluorophenyl)piperidine-1-carboxamide
N17.1: tert-Butyl 4-(5-(1,1-difluoro-2-(2-(trifluoromethyl)pyrimidin-4-yloxy)ethyl)-2-(methylthio)pyrimidin-4-yl)piperidine-1-carboxylate

Intermediate N17.1 was synthesized from intermediate D28.1 using a method analogous to that used to synthesize intermediate N14.1 from intermediate D24.2.


N17.2: 5-(1,1-Difluoro-2-(2-(trifluoromethyl)pyrimidin-4-yloxy)ethyl)-2-(methylthio)-4-(piperidin-4-yl)pyrimidine hydrochloride salt

Intermediate N17.2 was synthesized from the Boc deprotection of intermediate N17.1 using General Procedure 2.


N17.3: 4-(5-(1,1-Difluoro-2-(2-(trifluoromethylpyrimidin-4-yloxy)ethyl)-2-(methylthio)pyrimidin-4-yl)-N-(2,6-difluorophenyl)piperidine-1-carboxamide

Intermediate N17.3 was synthesized from intermediate N17.2 and 2,6-difluorophenyl isocyanate using General Procedure 5.


N17.4: 4-(5-(1,1-Difluoro-2-(2-(trifluoromethyl)pyrimidin-4-yloxy)ethyl)-2-(methylsulfonyl)pyrimidin-4-yl)-N-(2,6-difluorophenyl)piperidine-1-carboxamide

Intermediate N17.4 was synthesized from intermediate N17.3 using General Procedure 6.


Compound N17

Compound N17 was synthesized from intermediate N17.4 using a method analogous to that used to convert intermediate C69.6 to Compound C69. 1H-NMR (400 MHz, CDCl3): δ 8.67 (d, 1H), 8.38 (s, 1H), 7.12 (m, 1H), 7.00 (d, 1H), 6.95 (t, 2H), 5.91 (s, 1H), 5.23 (s, 2H), 4.94 (t, 2H), 4.25 (d, 2H), 3.15 (tt, 1H), 3.05 (td, 2H), 2.06 (qd, 2H), 1.79 (m, 2H). MS (EI) for C23H20F7N7O2. found 560.2 (MH+). Analytical HPLC, ret. time=16.280 min, 99% purity.


Compound N18: N-(2,6-Difluorophenyl)-4-[5-(1,1-difluoro-2-{[2-(trifluoromethyl)pyrimidin-4-yl]amino}ethyl)-2-methylpyrimidin-4-yl]piperidine-1-carboxamide
N18.1: tert-Butyl 4-(5-(2-azidoacetyl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate

Intermediate N18.1 was synthesized from intermediate D24.1 using a method analogous to that used for the conversion of intermediate C70.3 to intermediate C70.4.


N18.2: tert-Butyl 4-(5-(2-azido-1,1-difluoroethyl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate

Intermediate N18.2 was made from intermediate N18.1 using a method analogous to that used to convert intermediate D24.2 to intermediate N14.1


N18.3: tert-Butyl 4-(5-(2-amino-1,1-difluoroethyl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate

To a solution of intermediate N18.2 (56 mg, 0.15 mmol) in THF-H2O (2 mL/0.1 mL) was added Ph3P (43 mg, 0.16 mmol). The mixture was stirred at 60° C. for 4 h, and then cooled to rt. The crude reaction solution was used as is in the next reaction.


N18.4: tert-Butyl 4-(5-(1,1-difluoro-2-(2-(trifluoromethyl)pyrimidin-4-ylamino)ethyl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate

To the crude reaction solution of intermediate N18.3 were added 4-chloro-2-trifluoromethylpyrimidine (55 mg, 0.30 mmol) and excess triethylamine. The reaction mixture was stirred at 60° C. for 24 h and cooled to rt. EtOAc was added to extract the product. The organic phase was washed with saturated NaHCO3, brine, and dried over anhydrous Na2SO4. After removal of the solvents, the residue was purified by flash column chromatography to give intermediate N18.4 (50 mg, 66%).


N18.5: N-(2,2-Difluoro-2-(2-methyl-4-(piperidin-4-yl)pyrimidin-5-yl)ethyl)-2-(trifluoromethyl)pyrimidin-4-amine hydrochloride salt

Intermediate N18.5 was made from the Boc deprotection of intermediate N18.4 using General Procedure 2.


Compound N18

Compound N18 was made from intermediate N18.5 and 2,6-difluorophenyl isocyanate using General Procedure 5. 1H NMR (400 MHz, DMSO-d6) δ 8.67 (s, 1H), 8.59 (m, 1H), 8.29 (m, 2H), 7.28 (m, 1H), 7.11 (m, 2H), 6.81 (m, 1H), 4.24 (m, 2H), 3.60 (m, 2H), 3.45 (m, 1H), 2.80 (m, 1H), 2.62 (s, 3H), 1.62 (m, 5H). MS (EI) for C24H22F7N7O. found: 558.2 (MH+). Analytical HPLC, ret. time=16.06 min, 99.7% purity.


Compound N19: N-[2-(4-{1-[(2,6-Difluorophenyl)acetyl]piperidin-4-yl}-2-methylpyrimidin-5-yl)-2,2-difluoroethyl]-2-(trifluoromethyl)pyrimidin-4-amine

Compound N19 was made from intermediate N18.5 and 2,6-difluorophenylacetic acid using General Procedure 4. 1H NMR (400 MHz, DMSO-d6) δ 8.63 (s, 1H), 8.58 (m, 1H), 7.34 (m, 1H), 7.28 (m, 1H), 7.09 (m, 2H), 6.76 (m, 1H), 4.40 (m, 2H), 4.24 (m, 2H), 3.60 (m, 2H), 3.45 (m, 1H), 2.80 (m, 1H), 2.60 (s, 3H), 1.62 (m, 5H). MS (EI) for C25H23F7N6O. found: 557.2 (MH+). Analytical HPLC, ret. time=18.17 min, 99.7% purity.


Compound N20: N-(2,6-Difluorophenyl)-4-[5-(1,1-difluoro-2-{[4-(trifluoromethyl)pyrimidin-2-yl]amino}ethyl)-2-methylpyrimidin-4-yl]piperidine-1-carboxamide
N20.1: tert-Butyl 4-(5-(1,1-difluoro-2-(4-(trifluoromethyl)pyrimidin-2-ylamino)ethyl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate

Intermediate N20.1 was made from intermediate N18.3 and 2-chloro-4-(trifluoromethyl)pyrimidine using a method analogous to that used to synthesize intermediate N18.4 from intermediate N18.3


N20.2: N-(2,2-Difluoro-2-(2-methyl-4-(piperidin-4-yl)pyrimidin-5-yl)ethyl)-4-(trifluoromethyl)pyrimidin-2-amine hydrochloride salt

Intermediate N20.2 was made from the Boc deprotection of intermediate N20.1 using General Procedure 2.


Compound N20

Compound N20 was made from intermediate N20.2 and 2,6-difluorophenyl isocyanate using General Procedure 5. 1H NMR (400 MHz, DMSO-d6) δ 8.67 (s, 1H), 8.59 (m, 1H), 8.29 (m, 2H), 7.26 (m, 1H), 7.08 (m, 2H), 7.02 (m, 1H), 4.24 (m, 2H), 3.60 (m, 2H), 3.45 (m, 1H), 2.80 (m, 1H), 2.58 (s, 3H), 1.62 (m, 5H). MS (EI) for C24H22F7N7O. found: 558.2 (MH+). Analytical HPLC, ret. time=16.75 min, 95% purity.


Compound N21: N-[2-(4-{1-[(2,6-Difluorophenyl)acetyl]piperidin-4-yl}-2-methylpyrimidin-5-yl)-2,2-difluoroethyl]-4-(trifluoromethyl)pyrimidin-2-amine

Compound N21 was made from intermediate N20.2 and 2,6-difluorophenylacetic acid using General Procedure 4. 1H NMR (400 MHz, DMSO-d6) δ 8.65 (s, 1H), 8.59 (m, 1H), 8.48 (m, 1H), 7.36 (m, 1H), 7.08 (m, 3H), 4.50 (m, 1H), 4.24 (m, 3H), 3.80 (m, 2H), 3.45 (m, 1H), 2.80 (m, 1H), 2.58 (s, 3H), 1.62 (m, 5H). MS (EI) for C25H23F7N6O. found: 557.2 (MH+). Analytical HPLC, ret. time=19.74 min, 98% purity.


Compound N22: N-(2,6-Difluorophenyl)-4-[5-(1-fluoro-2-{[6-(trifluoromethyl)pyridin-2-yl]oxy}ethyl)-2-methylpyrimidin-4-yl]piperidine-1-carboxamide
N22.1: tert-Butyl 4-(5-(1-hydroxy-2-(6-(trifluoromethyl)pyridin-2-yloxy)ethyl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate

Intermediate N22.1 was synthesized from intermediate D24.2 using a method analogous to the reduction of Compound M6 to Compound N2.


N22.2: tert-Butyl 4-(5-(1-fluoro-2-(6-(trifluoromethyl)pyridin-2-yloxy)ethyl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate

To a stirred solution of intermediate N22.1 (41 mg, 0.08 mmol) at 0° C. was added DAST (34 mg, 0.21 mmol). The mixture was stirred at 0° C. for 30 min and then partitioned between EtOAc and saturated aqueous NaHCO3. The aqueous layer was extracted with EtOAc. The combined organic portions were washed with brine, dried (MgSO4), filtered, and concentrated in vacuo to give a crude intermediate N22.2. The crude product was used directly in the next reaction without further purification. MS (EI) for C23H28F4N4O3. found: 485.2 (MH+).


N22.3: 5-(1-Fluoro-2-(6-(trifluoromethyl)pyridin-2-yloxy)ethyl)-2-methyl-4-(piperidin-4-yl)pyrimidine hydrochloride salt

Intermediate N22.3 was made from the Boc deprotection of intermediate N22.2 using General Procedure 2.


Compound N22

Compound N22 was synthesized from intermediate N22.3 and 2,6-difluorophenyl isocyanate using General Procedure 5. 1H-NMR (400 MHz, CDCl3): δ 8.55 (s, 1H), 7.65 (t, 1H), 7.20 (d, 1H), 6.98 (m, 1H), 6.88 (d, 1H), 6.83-6.78 (m 2H), 6.00 (ddd, 1H), 5.76 (s, 1H), 4.70-4.47 (m, 2H), 4.11 (d, 2H), 3.03-2.90 (m 3H), 2.58 (s, 3H), 2.13-1.88 (m, 2H), 1.65 (m, 2H). MS (EI) for C25H23F6N5O2. found: 540.2 (MH+). Analytical HPLC, ret. time=14.7 min, 98% purity.


Compound N23: 4-[5-(1-Amino-2-{[6-(trifluoromethyl)pyridin-2-yl]oxy}ethyl)-2-methylpyrimidin-4-yl]-N-(2,6-difluorophenyl)piperidine-1-carboxamide

Compound N23 was recovered from the same procedure that was used to generated Compound N. 1H NMR (400 MHz, DMSO-d6) δ 8.77 (s, 1H), 8.21 (s, 1H), 7.94 (t, 1H), 7.47 (d, 1H), 7.25 (m, 1H), 7.08 (m, 3H), 4.61 (m, 1H), 4.40 (m, 2H), 4.18 (m, 2H), 3.45 (m, 3H), 2.85 (m, 2H), 2.55 (s, 3H), 1.62 (m, 4H). MS (EI) for C25H25F5N6O2. found: 537.2 (MH+). Analytical HPLC, ret. time=12.47 min, 99% purity.


Compound N24: 4-[2-Amino-5-(1-amino-2-{[6-(trifluoromethyl)pyridin-2-yl]oxy}ethyl)pyrimidin-4-yl]-N-(2,6-difluorophenyl)piperidine-1-carboxamide

Compound N24 was made from intermediate N3.4 in a manner similar to the way Compound N23 was made from Compound M4. 1H-NMR (400 MHz, CDCl3): δ 8.50 (s, 1H), 7.76 (t, 1H), 7.31 (d, 1H), 7.12 (m, 1H), 6.95 (m, 3H), 5.93 (br s, 1H), 5.03 (br s, 2H), 4.69 (dd, 1H), 4.58 (dd, 1H), 4.22 (m, 3H), 3.18 (m, 1H), 3.03 (t, 2H), 2.18-1.82 (comp m, 4H), 1.76 (m, 2H). MS (EI) for C24H24F5N7O2. found: 538.1 (MH+). Analytical HPLC, ret. time=8.54 min, 98% purity.


Compound N25: 4-[5-(1-Amino-2-{[2-(trifluoromethyl)pyrimidin-4-yl]oxy}ethyl)-2-methylpyrimidin-4-yl]-N-(2,6-difluorophenyl)piperidine-1-carboxamide
N25.1: tert-Butyl 4-(2-methyl-5-(2-(2-(trifluoromethyl)pyrimidin-4-yloxy)acetyl)pyrimidin-4-yl)piperidine-1-carboxylate

Intermediate N25.1 was synthesized from intermediate D24.1 and 2-(trifluoromethyl)pyrimidin-4-ol using a method analogous to the method used to synthesize intermediate D24.2 from intermediate D24.1 and 6-(trifluoromethyl)pyridin-2-ol.


N25.2: 1-(2-Methyl-4-(piperidin-4-yl)pyrimidin-5-yl)-2-(2-(trifluoromethyl)pyrimidin-4-yloxy)ethanone hydrochloride salt

Intermediate N25.2 was synthesized from the Boc deprotection of intermediate N25.1 using General Procedure 2.


N25.3: N-(2,6-Difluorophenyl)-4-(2-methyl-5-(2-(2-(trifluoromethyl)pyrimidin-4-yloxy)acetyl)pyrimidin-4-yl)piperidine-1-carboxamide

Intermediate N25.3 was made from intermediate N25.2 and 2,6-difluorophenyl isocyanate using General Procedure 5.


Compound N25

Compound N25 was synthesized from intermediate N25.3 using a method analogous to that used to synthesize Compound N23 from Compound M4. 1H-NMR (400 MHz, DMSO-d6): δ 8.77 (d, 1H), 8.57 (s, 1H), 8.26 (s, 1H), 8.21 (d, 1H), 7.27 (m, 1H), 7.11 (m, 2H), 6.83 (d, 1H), 5.45 (m, 1H), 5.28 (m, 1H), 4.24 (m, 2H), 3.72 (m, 2H), 3.38 (m, 1H), 2.91 (m, 2H), 2.55 (s, 3H), 1.86 (m, 2H), 1.70 (m, 2H). MS (EI) for C24H24F5N7O2. found: 538.2 (MH+). Analytical HPLC, ret. time=9.30 min, 88% purity.


Compound N26: N-(2,6-difluorophenyl)-4-{5-[(1Z)—N-hydroxy-2-{[6-(trifluoromethyl)pyridin-2-yl]oxy}ethanimidoyl]-2-methylpyrimidin-4-yl}piperidine-1-carboxamide

Compound M4 (32 mg, 0.06 mmol) was dissolved in EtOH (2 mL). Hydroxylamine hydrochloride (15 mg) was added. The reaction mixture was stirred at 40° C. for 12 h. EtOH was removed. The residue was purified by preparative HPLC to give a 5.6:1 mixture of the desired oximes. Data for the major isomer: 1H NMR (400 MHz, DMSO-d6) δ 12.04 (s, 1H), 8.45 (s, 1H), 8.24 (s, 1H), 7.88 (t, 1H), 7.47 (d, 1H), 7.25 (m, 1H), 7.11 (m, 2H), 6.96 (d, 1H), 5.60 (s, 1H), 4.16 (m, 2H), 3.45 (m, 2H), 3.08 (m, 1H), 2.82 (m, 2H), 2.52 (s, 3H), 1.72 (m, 2H), 1.50 (m, 2H). MS (EI) for C25H23F5N6O3. found: 551.2 (MH+). Analytical HPLC, ret. time=16.34 min, 5.6:1 mixture, 99% purity.


Compound N27: 4-{2-Amino-5-[1-(methylamino)-2-{[6-(trifluoromethyl)pyridin-2-yl]oxy}ethyl]pyrimidin-4-yl}-N-(2,6-difluorophenyl)piperidine-1-carboxamide

To a solution of intermediate N3.4 (60 mg, 0.11 mmol) in 2M methylamine in MeOH (1.5 mL, 3.0 mmol methylamine) was added AcOH (50 μL) and Na(CN)BH3 (21 mg, 0.33 mmol). The resulting mixture was heated with stirring to 45° C. overnight, followed by the addition of additional aliquots of Na(CN)BH3 (21 mg), 2M methylamine in MeOH (1.0 mL), and AcOH (50 μL) and heating in a sealed tube at 60° C. for several days. The reaction mixture was allowed to cool to room temperature, diluted with EtOAc and washed with saturated aqueous NaHCO3 (3×), saturated aqueous NaCl (1×) dried (Na2SO4) and concentrated in vacuo. The resulting residue was purified by preparative HPLC to give Compound N27 (10 mg, 16% yield). 1H-NMR (400 MHz, CDCl3): δ 8.53 (br s, 1H), 7.76 (t, 1H), 7.32 (d, 1H), 7.12 (m, 1H), 7.00 (d, 1H), 6.94 (t, 2H), 5.93 (br s, 1H), 5.21 (br s, 2H), 4.63 (m, 1H), 4.37 (m, 2H), 4.22 (m, 2H), 3.17 (m, 1H), 3.05 (m, 2H), 2.39 (s, 3H), 2.25-1.92 (m, 3H), 1.74 (m, 2H). MS (EI) for C25H26F5N7O2. found: 552.2 (MH+). Analytical HPLC, ret. time=8.65 min, 92% purity.


Compound N28: 4-[5-(1-[(1-Acetylpiperidin-4-yl)amino]-2-{[6-(trifluoromethyl)pyridin-2-yl]oxy}ethyl)-2-methylpyrimidin-4-yl]-N-(2,6-difluorophenyl)piperidine-1-carboxamide
N28.1: tert-Butyl 4-(1-(4-(1-(2,6-difluorophenylcarbamoyl)piperidin-4-yl)-2-methylpyrimidin-5-yl)-2-(6-trifluoromethyl)pyridin-2-yloxy)ethylamino)piperidine-1-carboxylate

To a solution of intermediate N3.4 (106 mg, 0.20 mmol) in MeOH (3.0 mL) was added tert-butyl 4-aminopiperidine-1-carboxylate (1.16 g, 6.8 mmol), AcOH (150 μL) and Na(CN)BH3 (120 mg, 1.9 mmol). The resulting mixture was heated with stirring to 60° C. in a sealed tube for several days. The reaction mixture was allowed to cool to room temperature, diluted with EtOAc and washed with saturated aqueous NaHCO3 (3×), water (1×), aqueous 10% citric acid (3×), saturated aqueous NaCl (1×) dried (Na2SO4) and concentrated in vacuo to give crude intermediate N28.1 which was used as is in the next reaction. MS (EI) for C35H42F5N7O4. found: 720.3 (MH+).


N28.2: N-(2,6-difluorophenyl)-4-(2-methyl-5-(1-(piperidin-4-ylamino)-2-(6-(trifluoromethyl)pyridin-2-yloxy)ethyl)pyrimidin-4-yl)piperidine-1-carboxamide hydrochloride salt

Intermediate N28.2 was made from the Boc deprotection of intermediate N28.1 using General Procedure 2.


Compound N28

Compound N28 was made from intermediate N28.2 using a method analogous to that used to convert Compound D29 to Compound D31. 1H-NMR (400 MHz, CDCl3): δ 8.85 (br s, 1H), 7.78 (t, 1H), 7.35 (d, 1H), 7.12 (m, 1H), 6.94 (m, 3H), 5.93 (br s, 1H), 4.74 (m, 1H), 4.56 (m, 1H), 4.39 (m, 1H), 4.22 (m, 2H), 3.80-3.55 (m, 2H), 3.27 (m, 1H), 3.05 (m, 2H), 2.70 (s, 3H), 2.60 (m, 2H), 2.22 (m, 1H), 2.07 (s, 3H), 1.80-1.10 (comp m, 9H). MS (EI) for C32H36F5N7O3. found: 662.3 (MH+). Analytical HPLC, ret. time=9.85 min, 95% purity.


Compound N29: 2-Fluorophenyl 4-[2-amino-5-(1-amino-2-{[6-(trifluoromethyl)pyridin-2-yl]oxy}ethyl)pyrimidin-4-yl]piperidine-1-carboxylate

Compound N29 was made in four steps from intermediate N29.1 in the same manner that Compound N24 was made in four steps from intermediate N3.1, substituting 2-fluorophenyl chloroformate for 2,6-difluorophenyl isocyanate in the first step and using standard reaction conditions typical with chloroformates such as those elaborated on in the synthesis of Compound A119 from intermediate A116.3. 1H NMR (400 MHz, CDCl3) δ 8.22 (d, 1H), 8.20 (bs, 1H), 7.25-7.08 (m, 4H), 6.74 (d, 1H), 6.45 (s, 1H), 5.45 (s, 1H), 5.24 (s, 2H), 4.72 (d, 1H), 4.57-4.31 (td, 2H), 3.96 (d, 1H), 3.76 (d, 1H), 3.01 (ddd, 3H), 1.83 (s, 2H), 1.65 (d, 1H). MS (EI) for C24H24F4N6O3. found: 521.2 (MH+). Analytical HPLC, ret. time=10.70 min, 98% purity.


Compound N30: N-(2,6-Difluorophenyl)-4-{5-[1,3-dihydroxy-1-({[6-(trifluoromethyl)pyridin-2-yl]oxy}methyl)propyl]-2-methylpyrimidin-4-yl}piperidine-1-carboxamide
N30.1: tert-Butyl 4-(5-(2-hydroxy-1-(6-(trifluoromethyl)pyridin-2-yloxy)pent-4-en-2-yl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate

To a 0° C. solution of intermediate D24.2 (450 mg, 0.93 mmol) in THF (3 mL) was added dropwise allyl magnesium bromide (2.8 mL, 1.0 M in diethyl ether). The reaction mixture was stirred at 0° C. for 10 min, and then was quenched by slow addition of ice-water. The mixture was extracted with EtOAc, washed with brine, and dried over anhydrous Na2SO4. After removal of the solvents, the residue was purified by flash column chromatography to give intermediate N30.1 (290 mg, 60%).


N30.2: tert-Butyl 4-(5-(2,4-dihydroxy-1-(6-(trifluoromethyl)pyridin-2-yloxy)butan-2-yl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate

Ozone was bubbled though a −78° C. solution of the intermediate N30.1 prepared above (33 mg, 0.063 mmol) in DCM/MeOH (5 mL/2 mL) until the blue color persisted. Nitrogen was then bubbled through the mixture to remove excess ozone. To this solution was added NaBH4 (10 mg, 0.26 mmol). The mixture was allowed to warm to rt gradually. Removal of the solvents gave crude intermediate N30.2, which was used in the next step without further purification.


N30.3: 3-(2-Methyl-4-(piperidin-4-yl)pyrimidin-5-yl)-4-(6-(trifluoromethyl)pyridin-2-yloxy)butane-1,3-diol hydrochloride salt

Intermediate N30.3 was made from the Boc deprotection of intermediate N30.2 using General Procedure 2.


Compound N30

Compound N30 was made from intermediate N30.3 and 2,6-difluorophenyl isocyanate using General Procedure 5. 1H NMR (400 MHz, DMSO-d6) δ 8.66 (s, 1H), 8.22 (s, 1H), 7.95 (t, 1H), 7.48 (m, 1H), 7.26 (m, 1H), 7.08 (m, 3H), 5.74 (s, 1H), 4.65 (m, 3H), 4.12 (m, 2H), 3.60 (m, 1H), 3.52 (m, 1H), 2.89 (m, 2H), 2.57 (s, 3H), 2.20 (m, 2H), 1.82 (m, 3H), 1.68 (d, 1H), 1.55 (d, 1H). MS (EI) for C27H28F5N5O4. found: 582.2 (MH+). Analytical HPLC, ret. time=14.88 min, 88% purity.


Compound N31: 4-(5-(4-Amino-2-hydroxy-1-(6-(trifluoromethyl)pyridin-2-yloxy)butan-2-yl)-2-methylpyrimidin-4-yl)-N-(2,6-difluorophenyl)piperidine-1-carboxamide
N31.1: tert-Butyl 4-(5-(4-azido-2-hydroxy-1-(6-(trifluoromethyl)pyridin-2-yloxy)butan-2-yl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate

To a solution of intermediate N30.2 (80 mg, 0.15 mmol) in DCM (2 mL) were added pyridine (120 mg, 1.5 mmol) and tosyl chloride (43 mg, 0.23 mmol). The reaction mixture was stirred at rt for 12 h. Saturated NaHCO3 was added to quench the reaction. The mixture was diluted with DCM, washed with saturated NaHCO3, and dried over anhydrous Na2SO4. The solvents were removed under reduced pressure. The residue was dissolved in DMF (0.6 mL) to which was added NaN3 (65 mg, 1 mmol). The mixture was stirred at 55° C. for 24 h. The mixture was extracted with EtOAc, washed with brine and dried over anhydrous Na2SO4. Removal of the solvents gave the crude intermediate N31.1 which was used in the next step without further purification.


N31.2: 4-Azido-2-(2-methyl-4-(piperidin-4-yl)pyrimidin-5-yl)-1-(6-(trifluoromethyl)pyridin-2-yloxy)butan-2-ol

Intermediate N31.2 was made from the Boc deprotection of intermediate N31.1 using General Procedure 2.


N31.3: 4-(5-(4-Azido-2-hydroxy-1-(6-(trifluoromethyl)pyridin-2-yloxy)butan-2-yl)-2-methylpyrimidin-4-yl)-N-(2,6-difluorophenyl)piperidine-1-carboxamide

Intermediate N31.3 was made from intermediate N31.2 and 2,6-difluorophenyl isocyanate using General Procedure 5.


Compound N31

Compound N31 was made from intermediate N31.3 using a method analogous to that used to convert intermediate N18.2 to intermediate N18.3. 1H NMR (400 MHz, DMSO-d6) δ 8.69 (s, 1H), 8.21 (s, 1H), 7.94 (t, 1H), 7.48 (d, 1H), 7.26 (m, 1H), 7.08 (m, 3H), 4.58 (s, 2H), 4.18 (m, 2H), 3.75 (m, 1H), 2.90 (m, 2H), 2.78 (m, 1H), 2.63 (m, 1H), 2.56 (s, 3H), 2.14 (m, 2H), 1.86 (m, 4H), 1.62 (m, 2H), 1.55 (d, 1H). MS (EI) for C27H29F5N6O3. found: 581.2 (MH+). Analytical HPLC, ret. time=11.91 min, 94% purity.


Compound N32: N-(2,6-Difluorophenyl)-4-{5-[1,2-dihydroxy-1-({[6-(trifluoromethyl)pyridin-2-yl]oxy}methyl)ethyl]-2-methylpyrimidin-4-yl}piperidine-1-carboxamide
N32.1: tert-Butyl 4-(2-methyl-5-(3-(6-(trifluoromethyl)pyridin-2-yloxy)prop-1-en-2-yl)pyrimidin-4-yl)piperidine-1-carboxylate

To a 0° C. suspension of methyltriphenylphosphonium bromide (1.1 g, 2.86 mmol) in THF (12 mL) was added KOtBu (2.86 mL, 2.86 mmol, 1.0 M in THF). The ice bath was removed and mixture was stirred at rt for 30 min. The mixture was cooled to 0° C. and a solution of intermediate D24.2 (920 mg, 1.91 mmol) in THF (1 mL) was added. Then the reaction mixture was stirred at rt for 12 h. Water was added to quench the reaction. The mixture was extracted with EtOAc, washed with brine, and dried over anhydrous Na2SO4. Further purification by flash column chromatography gave intermediate N32.1 (550 mg, 60%).


N32.2: tert-Butyl 4-(5-(1,2-dihydroxy-3-(6-(trifluoromethyl)pyridin-2-yloxy)propan-2-yl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate

To a solution of intermediate N32.1 (100 mg, 0.21 mmol) in acetone/H2O/tBuOH (1 mL/0.2 mL/0.2 mL) were added NMO (50 mg, 0.42 mmol) and OsO4 (0.12 mL, 2.5% w/w solution in tBuOH). The reaction was stirred at rt for 48 h. The solvent was removed under reduced pressure, and the residue was extracted with EtOAc (10 mL) and washed with 5% aq HCl and saturated Na2S2O3 solution. The organic layer was dried over anhydrous Na2SO4. Further purification by flash column chromatography gave intermediate N32.2 (80 mg, 78%).


N32.3: 2-(2-Methyl-4-(piperidin-4-yl)pyrimidin-5-yl)-3-(6-(trifluoromethyl)pyridin-2-yloxy)propane-1,2-diol hydrochloride salt

Intermediate N32.3 was made from the Boc deprotection of intermediate N32.2 using General Procedure 2.


Compound N32

Compound N32 was made from intermediate N32.3 and 2,6-difluorophenyl isocyanate using General Procedure 5. 1H NMR (400 MHz, DMSO-d6) δ 8.58 (s, 1H), 8.24 (s, 1H), 7.95 (t, 1H), 7.49 (d, 1H), 7.27 (m, 1H), 7.10 (m, 3H), 5.73 (s, 1H), 5.19 (s, 1H), 4.84 (d, 1H), 4.57 (d, 1H), 4.20 (t, 1H), 3.82 (m, 3H), 2.83 (m, 2H), 2.57 (s, 3H), 1.80 (m, 4H). MS (EI) for C26H26F5N5O4. found: 568.2 (MH+). Analytical HPLC, ret. time=10.48 min, 98% purity.


Compound N33: 4-{5-[2-Azido-1-hydroxy-1-({[6-(trifluoromethyl)pyridin-2-yl]oxy}methyl)ethyl]-2-methylpyrimidin-4-yl}-N-(2,6-difluorophenyl)piperidine-1-carboxamide
N33.1: tert-Butyl 4-(5-(1-azido-2-hydroxy-3-(6-(trifluoromethyl)pyridin-2-yloxy)propan-2-yl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate

Intermediate N33.1 was made from intermediate N32.2 using a method analogous to that used to make N31.1 from N30.2


N33.2: 1-Azido-2-(2-methyl-4-(piperidin-4-yl)pyrimidin-5-yl)-3-(6-(trifluoromethyl)pyridin-2-yloxy)propan-2-ol hydrochloride salt

Intermediate N33.2 was made from the Boc deprotection of intermediate N33.1 using General Procedure 2.


Compound N33

Compound N33 was made from intermediate N33.2 and 2,6-difluorophenyl isocyanate using General Procedure 5. 1H NMR (400 MHz, DMSO-d6) δ 8.63 (s, 1H), 8.21 (s, 1H), 7.96 (t, 1H), 7.51 (d, 1H), 7.27 (m, 1H), 7.11 (m, 3H), 6.33 (s, 1H), 4.65 (q, 2H), 4.19 (m, 2H), 3.90 (m, 2H), 3.76 (m, 1H), 2.90 (m, 2H), 2.56 (s, 3H), 1.83 (m, 2H), 1.66 (m, 2H). MS (EI) for C26H25F5N8O3. found: 593.2 (MH+). Analytical HPLC, ret. time=17.09 min, 92% purity.


Compound N34: 4-{5-[2-Amino-1-hydroxy-1-({[6-(trifluoromethyl)pyridin-2-yl]oxy}methyl)ethyl]-2-methylpyrimidin-4-yl}-N-(2,6-difluorophenyl)piperidine-1-carboxamide

Compound N34 was made from Compound N33 using a method analogous to that used to convert intermediate N18.2 to intermediate N18.3. 1H NMR (400 MHz, CDCl3) δ 8.59 (s, 1H), 7.73 (t, 1H), 7.25 (m, 2H), 7.09 (m, 1H), 6.90 (m, 3H), 5.92 (s, 1H), 4.75 (m, 1H), 4.60 (m, 1H), 4.25 (m, 2H), 3.60 (m, 1H), 3.38 (m, 1H), 3.15 (m, 1H), 3.05 (m, 2H), 2.60 (s, 3H), 2.12 (m, 2H), 1.86 (m, 4H). MS (EI) for C26H27F5N6O3. found: 567.2 (MH+). Analytical HPLC, ret. time=12.21 min, 95% purity.


Compound N35: 1-Amino-2-(4-{1-[(2,6-difluorophenyl)acetyl]piperidin-4-yl}-2-methylpyrimidin-5-yl)-3-{[6-(trifluoromethyl)pyridin-2-yl]oxy}propan-2-ol
N35.1: 1-(4-(5-(1-Azido-2-hydroxy-3-(6-(trifluoromethyl)pyridin-2-yl)propan-2-yl)-2-methylpyrimidin-4-yl)piperidin-1-yl)-2-(2,6-difluorophenyl)ethanone

Intermediate N35.1 was made from intermediate N33.2 and 2,6-difluorophenylacetic acid using General Procedure 4.


Compound N35

Compound N35 was made from intermediate N35.1 using a method analogous to the conversion of intermediate C68.2 to intermediate C68.3. 1H-NMR (400 MHz, CDCl3, DMSO-d6): δ 8.66 (d, 1H), 7.79 (t, 1H), 7.34 (d, 1H), 7.24 (m, 1H), 6.99 (d, 1H), 6.91 (t, 2H), 4.74 (m, 1H), 4.70 (t, 2H), 4.12 (d, 1H), 3.78 (s, 2H), 3.66 (m, 1H), 3.48 (m, 1H), 3.29 (m, 2H), 2.73 (t, 2H), 2.66 (s, 3H), 2.04 (m, 2H), 1.79 (m, 2H). MS (EI) for C27H28F5N5O3. found 566.1 (MH+). Analytical HPLC, ret. time=10.216 min, 95% purity.


Compound N36: N-(2,6-Difluorophenyl)-4-{5-[2-{[(ethylamino)carbonyl]amino}-1-hydroxy-1-({[6-(trifluoromethyl)pyridin-2-yl]oxy}methyl)ethyl]-2-methylpyrimidin-4-yl}piperidine-1-carboxamide
N36.1: tert-Butyl 4-(5-(1-amino-2-hydroxy-3-(6-(trifluoromethyl)pyridin-2-yloxy)propan-2-yl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate

Intermediate N36.1 was made from intermediate N33.1 using a method analogous to that used to convert intermediate N35.1 to Compound N35.


N36.2: tert-Butyl 4-(5-(1-(3-ethylureido)-2-hydroxy-3-(6-(trifluoromethyl)pyridin-2-yloxy)propan-2-yl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate

Intermediate N36.2 was made from intermediate N36.1 and ethyl isocyanate using General Procedure 5. MS (EI) for C27H37F3N6O5. found 583.3 (MH+).


N36.3: 1-Ethyl-3-(2-hydroxy-2-(2-methyl-4-(piperidin-4-yl)pyrimidin-5-yl)-3-(6-(trifluoromethyl)pyridin-2-yloxy)propyl)urea TFA salt

Intermediate N36.3 was made from the Boc deprotection of intermediate N36.2 using General Procedure 2.


Compound N36

Compound N36 was made from intermediate N36.3 and 2,6-difluorophenyl isocyanate using General Procedure 5. 1H-NMR (400 MHz, CDCl3): δ 8.58 (s, 1H), 7.74 (t, 1H), 7.31 (d, 1H), 7.11 (m, 1H), 6.94 (t, 2H), 6.89 (d, 1H), 6.24 (s, 1H), 5.93 (s, 1H), 5.21 (t, 1H), 4.91 (d, 1H), 4.65 (d, 1H), 4.50 (t, 1H), 4.23 (t, 1H), 3.76 (d, 2H), 3.75 (m, 1H), 3.21 (m, 2H), 3.09 (qd, 2H), 2.65 (s, 3H), 2.12 (m, 2H), 1.83 (m, 2H), 1.13 (t, 3H). MS (EI) for C29H32F5N7O4. found 638.3 (MH+). Analytical HPLC, ret. time=13.672 min, 99% purity.


Compound N37: 4-{5-[2-(Acetylamino)-1-hydroxy-1-({[6-(trifluoromethyl)pyridin-2-yl]oxy}methyl)ethyl]-2-methylpyrimidin-4-yl}-N-(2,6-difluorophenyl)piperidine-1-carboxamide
N37.1: tert-Butyl 4-(5-(1-acetamido-2-hydroxy-3-(6-(trifluoromethyl)pyridin-2-yloxy)propan-2-yl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate

To a stirred solution of N36.1 (6.5 mg, 0.013 mmol) in dichloromethane (0.3 mL) were added Et3N (3.9 mg, 0.039 mmol) and acetic anhydride (2.0 mg, 0.020 mmol) in sequence. After stirring for 40 min at room temperature, aqueous saturated NH4Cl (3 mL) was added and the resulting solution was extracted with EtOAc (2×1 mL). The combined organic layers were dried over MgSO4 and concentrated to give a crude intermediate N36.1. MS (EI) for C26H34F3N5O5. found 554.3 (MH+).


N37.2: N-(2-Hydroxy-2-(2-methyl-4-(piperidin-4-yl)pyrimidin-5-yl)-3-(6-(trifluoromethyl)pyridin-2-yloxy)propyl)acetamide TFA salt

Intermediate N37.2 was made from the Boc deprotection of intermediate N37.1 using General Procedure 2.


Compound N37

Compound N37 was made from intermediate N37.2 and 2,6-difluorophenyl isocyanate using General Procedure 5. 1H-NMR (400 MHz, CDCl3): δ 8.62 (s, 1H), 7.76 (t, 1H), 7.34 (d, 1H), 7.11 (m, 1H), 6.94 (t, 2H), 6.90 (d, 1H), 6.33 (t, 1H), 5.92 (s, 1H), 5.74 (s, 1H), 4.93 (d, 1H), 4.70 (d, 1H), 4.26 (m, 2H), 3.86 (m, 1H), 3.76 (m, 1H), 3.63 (tt, 1H), 3.10 (qd, 2H), 2.65 (s, 3H), 2.15 (m, 2H), 2.03 (s, 3H), 1.85 (m, 2H). MS (EI) for C28H29F5N6O4. found 609.2 (MH+). Analytical HPLC, ret. time=10.628 min, 99% purity.


Compound N38: 4-{5-[2-{[2-(Acetylamino)ethyl]amino}-1-hydroxy-1-({[6-(trifluoromethyl)pyridin-2-yl]oxy}methyl)ethyl]-2-methylpyrimidin-4-yl}-N-(2,6-difluorophenyl)piperidine-1-carboxamide
N38.1: N-(2,6-Difluorophenyl)-4-(5-(2-hydroxy-1-oxo-3-(6-(trifluoromethyl)pyridin-2-yloxy)propan-2-yl)-2-methylpyrimidin-4-yl)piperidine-1-carboxamide

Intermediate N38.1 was synthesized by the oxidation of Compound N32 using a method analogous to that used to oxidize intermediate B46.1 to intermediate B46.2.


Compound N38

To a stirred solution of crude intermediate N38.1 (5.7 mg, 0.010 mmol), N-(2-aminoethyl)acetamide (1.7 mg, 90%, 0.015 mmol) and dichloromethane (0.5 mL) at room temperature was added NaBH(OAc)3 (6.4 mg, 0.030 mmol). After stirring for 40 min at 95° C., the resulting solution was purified by preparative HPLC to give Compound N38 (2.2 mg, 34%, 2 steps) as a white solid after lyophilization. 1H-NMR (400 MHz, CDCl3): δ 8.59 (s, 1H), 7.75 (t, 1H), 7.31 (d, 1H), 7.11 (m, 1H), 6.94 (t, 2H), 6.92 (d, 1H), 5.93 (s, 1H), 5.74 (t, 1H), 4.75 (d, 1H), 4.61 (d, 1H), 4.24 (d, 2H), 3.71 (tt, 1H), 3.35 (q, 2H), 3.27 (d, 1H), 3.07 (td, 2H), 3.06 (d, 1H), 2.80 (m, 2H), 2.67 (s, 3H), 2.12 (m, 2H), 1.98 (s, 3H), 1.78 (m, 2H). MS (EI) for C30H34F5N7O4. found 652.3 (MH+). Analytical HPLC, ret. time=11.496 min, 98% purity.


Compound N39: 4-{5-[2-(4-Acetylpiperazin-1-yl)-1-hydroxy-1-({[6-(trifluoromethyl)pyridin-2-yl]oxy}methyl)ethyl]-2-methylpyrimidin-4-yl}-N-(2,6-difluorophenyl)piperidine-1-carboxamide

Compound N39 was made in a manner similar to Compound N38: 1H-NMR (400 MHz, CDCl3): δ 8.70 (s, 1H), 7.74 (t, 1H), 7.30 (d, 1H), 7.12 (m, 1H), 6.94 (t, 2H), 6.91 (d, 1H), 5.91 (s, 1H), 4.98 (br s, 1H), 4.74 (d, 1H), 4.59 (d, 1H), 4.25 (t, 2H), 3.60 (m, 3H), 3.43 (m, 2H), 3.13 (d, 1H), 3.04 (t, 2H), 2.92 (d, 1H), 2.67 (s, 3H), 2.54 (m, 4H), 2.14 (m, 2H), 2.06 (s, 3H), 1.75 (m, 2H). MS (EI) for C32H36F5N7O4. found 678.3 (MH+). Analytical HPLC, ret. time=11.540 min, 98% purity.


Compound N40: 4-(5-{2-[(1-Acetylpyrrolidin-3-yl)amino]-1-hydroxy-1-({[6-(trifluoromethyl)pyridin-2-yl]oxy}methyl)ethyl}-2-methylpyrimidin-4-yl)-N-(2,6-difluorophenyl)piperidine-1-carboxamide

Compound N40 was made in a manner similar to Compound N38: 1H-NMR (400 MHz, CDCl3, a mixture of four stereomers): δ 8.55 and 8.53 (s, 1H), 7.76 (m, 1H), 7.32 (m, 1H), 7.12 (m, 1H), 6.93 (m, 3H), 5.98 (m, 1H), 4.77 (m, 1H), 4.55 (m, 1H), 4.25 (m, 2H), 3.76-3.55 (m, 3H), 3.52-3.18 (m, 4H), 3.12-2.93 (m, 3H), 2.68 (s, 3H), 2.23-2.06 (m, 3H), 2.05 and 2.03 (s, 3H), 1.85 (m, 2H), 1.70 (m, 2H). MS (EI) for C32H36F5N7O4. found 678.3 (MH+). Analytical HPLC, ret. time=11.120 min, 98% purity.


Compound N41: 4-(5-{2-[(N-Acetyl-beta-alanyl)amino]-1-hydroxy-1-({[6-(trifluoromethyl)pyridin-2-yl]oxy}methyl)ethyl}-2-methylpyrimidin-4-yl)-N-(2,6-difluorophenyl)piperidine-1-carboxamide

Compound N41 was made from Compound N34 and 3-acetamidopropanoic acid using standard amide coupling procedures such as those elaborated on in General Procedure 3. 1H-NMR (400 MHz, CDCl3): δ 8.62 (s, 1H), 7.77 (t, 1H), 7.35 (d, 1H), 7.12 (m, 1H), 6.95 (t, 2H), 6.92 (d, 1H), 6.67 (t, 1H), 6.13 (t, 1H), 5.93 (s, 1H), 5.59 (s, 1H), 4.85 (d, 1H), 4.70 (d, 1H), 4.27 (m, 2H), 3.85 (m, 2H), 3.65 (t, 1H), 3.50 (m, 2H), 3.11 (m, 2H), 2.66 (s, 3H), 2.45 (t, 2H), 2.16 (m, 2H), 1.92 (s, 3H), 1.85 (m, 2H). MS (EI) for C31H34F5N7O5. found 680.3 (MH+). Analytical HPLC, ret. time=10.416 min, 95% purity.


Compound N42: N-(2,6-Difluorophenyl)-4-(5-{1-hydroxy-2-[(3-hydroxypropanoyl)amino]-1-({[6-(trifluoromethyl)pyridin-2-yl]oxy}methyl)ethyl}-2-methylpyrimidin-4-yl)piperidine-1-carboxamide

Compound N42 was made in a manner similar to Compound N41. 1H-NMR (400 MHz, CDCl3): δ 8.64 (s, 1H), 7.70 (t, 1H), 7.34 (d, 1H), 7.12 (m, 1H), 6.95 (t, 2H), 6.91 (d, 1H), 6.65 (t, 1H), 5.93 (s, 1H), 4.90 (d, 1H), 4.74 (d, 1H), 4.26 (m, 2H), 3.89 (d, 1H), 3.87 (t, 2H), 3.80 (d, 1H), 3.62 (tt, 1H), 3.11 (m, 2H), 2.65 (s, 3H), 2.47 (t, 2H), 2.15 (m, 2H), 1.85 (m, 2H). MS (EI) for C29H31F5N6O5. found 639.2 (MH+). Analytical HPLC, ret. time=10.520 min, 91% purity.


Compound N43: 2-Fluorophenyl 4-{5-[2-(acetylamino)-1-hydroxy-1-({[6-(trifluoromethyl)pyridin-2-yl]oxy}methyl)ethyl]-2-methylpyrimidin-4-yl}piperidine-1-carboxylate

Compound N43 was made from intermediate N37.2 and 2-fluorophenyl chloroformate using a method analogous to that used to make Compound A119 from intermediate A116.3 and 2-chlorophenyl chloroformate. 1H-NMR (400 MHz, CDCl3, rotameric mixture): δ 8.64 and 8.61 (two of s, 1H), 7.77 (t, 1H), 7.35 (d, 1H), 7.18 (m, 4H), 6.90 (d, 1H), 6.34 (m, 1H), 5.84 and 5.72 (two of s, 1H), 4.95 (d, 1H), 4.71 and 4.68 (two of d, 1H), 4.48 (m, 1H), 4.40 (m, 1H), 3.88 (m, 1H), 3.75 (m, 1H), 3.65 (m, 1H), 3.18 (q, 1H), 3.02 (t, 1H), 2.67 (s, 3H), 2.16 (m, 2H), 2.04 (s, 3H), 1.89 (m, 1H), 1.80 (m, 1H). MS (EI) for C28H29F4N5O5. found 592.2 (MH+). Analytical HPLC, ret. time=13.408 min, 99% purity.


Compound N44: 2-[4-(1-{[(2,6-Difluorophenyl)amino]carbonyl}piperidin-4-yl)-2-methylpyrimidin-5-yl]-2-hydroxy-3-{[6-(trifluoromethyl)pyridin-2-yl]oxy}propanoic acid

To a stirred solution of crude intermediate N38.1 (16.5 mg, 0.029 mmol) and 2-methyl-2-butene (50 μL) in t-BuOH (0.3 mL) at room temperature was added a mixture of NaH2PO4.2H2O (23 mg, 0.15 mmol), NaClO2 (13 mg, 0.15 mmol) and H2O (0.3 mL). After stirring for 15 min at room temperature, the resulting solution was purified by preparative HPLC to give Compound N44 (8.5 mg, 50%, 2 steps) as a white solid after lyophilization. 1H-NMR (400 MHz, MeOH-d4): δ 8.66 (s, 1H), 7.88 (t, 1H), 7.40 (d, 1H), 7.25 (m, 1H), 7.07 (d, 1H), 7.00 (t, 2H), 5.49 (s, 1H), 5.07 (d, 1H), 4.86 (d, 1H), 4.28 (t, 2H), 3.66 (t, 1H), 3.02 (q, 2H), 2.65 (s, 3H), 1.98 (m, 2H), 1.85 (m, 1H), 1.69 (m, 1H). MS (EI) for C26H24F5N5O5. found 582.2 (MH+). Analytical HPLC, ret. time=11.244 min, 95% purity.


Compound N45: N-(2,6-Difluorophenyl)-4-{5-[1-hydroxy-2-(methylamino)-2-oxo-1-({[6-(trifluoromethyl)pyridin-2-yl]oxy}methyl)ethyl]-2-methylpyrimidin-4-yl}piperidine-1-carboxamide

Compound N45 was made from Compound N44 and methylamine using standard amide coupling procedures such as those elaborated on in General Procedure 3. 1H-NMR (400 MHz, CDCl3): δ 8.76 (s, 1H), 7.83 (t, 1H), 7.39 (d, 1H), 7.11 (m, 1H), 7.03 (m, 2H), 6.94 (t, 2H), 6.25 (s, 1H), 5.90 (s, 1H), 5.16 (d, 1H), 4.97 (d, 1H), 4.24 (m, 2H), 3.53 (m, 1H), 3.01 (m, 2H), 2.89 (d, 3H), 2.67 (s, 3H), 2.08 (m, 2H), 1.75 (m, 2H). MS (EI) for C27H27F5N6O4. found 595.2 (MH+). Analytical HPLC, ret. time=11.260 min, 95% purity.


Compound N46: 4-Fluorophenyl 4-{5-[2-(acetylamino)-1-hydroxy-1-({[6-(trifluoromethyl)pyridin-2-yl]oxy}methyl)ethyl]-2-methylpyrimidin-4-yl}piperidine-1-carboxylate

Compound N46 was made from intermediate N37.2 in the same manner that Compound N43 was from intermediate N37.2, substituting 4-fluorophenyl chloroformate for 2-fluorophenyl chloroformate. 1H-NMR (400 MHz, CDCl3, rotameric mixture): δ 8.64 and 8.61 (two of s, 1H), 7.77 (t, 1H), 7.35 (d, 1H), 7.08 (m, 4H), 6.90 (d, 1H), 6.37 (m, 1H), 5.86 and 5.72 (two of s, 1H), 4.94 (d, 1H), 4.71 and 4.68 (two of d, 1H), 4.43 (m, 2H), 3.87 (m, 1H), 3.75 (m, 1H), 3.64 (m, 1H), 3.14 (q, 1H), 2.99 (t, 1H), 2.66 (s, 3H), 2.12 (m, 2H), 2.04 (s, 3H), 1.88 (m, 1H), 1.79 (m, 1H). MS (EI) for C28H29F4N5O5. found 592.2 (MH+). Analytical HPLC, ret. time=13.416 min, 96% purity.


Compound N47: 2,6-Difluorophenyl 4-{5-[2-(acetylamino)-1-hydroxy-1-({[6-(trifluoromethyl)pyridin-2-yl]oxy}methyl)ethyl]-2-methylpyrimidin-4-yl}piperidine-1-carboxylate

Compound N47 was made from intermediate N37.2 in the same manner that Compound N43 was from intermediate N37.2, substituting 2,6-difluorophenyl chloroformate for 2-fluorophenyl chloroformate. 1H-NMR (400 MHz, CDCl3, rotameric mixture): δ 8.63 and 8.61 (two of s, 1H), 7.77 (t, 1H), 7.34 (d, 1H), 7.14 (m, 1H), 6.97 (t, 2H), 6.90 (d, 1H), 6.37 (m, 1H), 5.84 and 5.73 (two of s, 1H), 4.94 (d, 1H), 4.71 and 4.68 (two of d, 1H), 4.49 (m, 1H), 4.38 (m, 1H), 3.88 (m, 1H), 3.74 (m, 1H), 3.65 (m, 1H), 3.21 (q, 1H), 3.05 (t, 1H), 2.66 (s, 3H), 2.16 (m, 2H), 2.04 (s, 3H), 1.89 (m, 1H), 1.80 (m, 1H). MS (EI) for C28H28F5N5O5. found 610.2 (MH+). Analytical HPLC, ret. time=16.840 min, 98% purity.


Compound N48: 4-[5-(1-Amino-1-cyano-2-{[6-(trifluoromethyl)pyridin-2-yl]oxy}ethyl)-2-methylpyrimidin-4-yl]-N-(2,6-difluorophenyl)piperidine-1-carboxamide
N48.1: tert-Butyl 4-(5-(1-amino-1-cyano-2-(6-(trifluoromethyl)pyridin-2-yloxy)ethyl)-2-methylpyrimidin-4-yl)piperidine-1-carboxylate

To a mixture of intermediate D24.2 (115 mg, 0.24 mmol) and NH3/MeOH (0.4 mL, 7 N) was added Ti(OiPr)4 (68 mg, 0.24 mmol). The mixture was stirred at rt for 4 h, and then was added TMSCN (100 mg, 1.0 mmol). The mixture was stirred at rt for 72 h. The reaction was diluted with EtOAc, and filtered through the Celite. The filtrate was concentrated and purified by flash column chromatography to intermediate N48.1 (60 mg, 49%).


N48.2: 2-Amino-2-(2-methyl-4-(piperidin-4-yl)pyrimidin-5-yl)-3-(6-(trifluoromethyl)pyridin-2-yloxy)propanenitrile hydrochloride salt

Intermediate N48.2 was made from the Boc deprotection of intermediate N48.1 using General Procedure 2.


Compound N48

Compound N48 was made from intermediate N48.2 and 2,6-difluorophenyl isocyanate using General Procedure 5. 1H NMR (400 MHz, DMSO-d6) δ 8.85 (s, 1H), 8.27 (s, 1H), 8.03 (t, 1H), 7.57 (d, 1H), 7.27 (m, 1H), 7.21 (d, 1H), 7.12 (m, 2H), 4.85 (d, 1H), 4.68 (d, 1H), 4.24 (m, 2H), 3.90 (m, 1H), 3.51 (s, 2H), 2.88 (m, 2H), 2.61 (s, 3H), 1.70 (m, 4H). MS (EI) for C26H24F5N7O2. found: 562.2 (MH+). Analytical HPLC, ret. time=20.08 min, 95% purity.


Compound N49: 4-{5-[1,2-Diamino-2-oxo-1-({[6-(trifluoromethyl)pyridin-2-yl]oxy}methyl)ethyl]-2-methylpyrimidin-4-yl}-N-(2,6-difluorophenyl)piperidine-1-carboxamide

To a solution of Compound N48 (28 mg, 0.05 mmol) in THF/H2O (1 mL/0.5 mL) was added LiOH H2O (20 mg, 0.47 mmol). The mixture was stirred at rt for 72 h. The reaction progress was monitored by LC-MS. After the starting material was consumed, EtOAc was added to extract the product. The organic layer was washed with water, dried over anhydrous Na2SO4. Removal of the solvents gave the crude amide. Further purification by HPLC gave the desired product. 1H NMR (400 MHz, DMSO-d6) δ 8.59 (s, 1H), 8.24 (s, 1H), 7.99 (t, 1H), 7.54 (m, 2H), 7.41 (m, 1H), 7.26 (m, 1H), 7.13 (m, 3H), 4.72 (m, 2H), 4.20 (m, 2H), 3.53 (m, 1H), 2.65 (m, 1H), 2.55 (s, 3H), 1.65 (m, 4H). MS (EI) for C26H26F5N7O3. found: 580.2 (MH+). Analytical HPLC, ret. time=11.32 min, 99% purity.


Compound N50: 5-(4-{1-[(2,6-Difluorophenyl)acetyl]piperidin-4-yl}-2-methylpyrimidin-5-yl)-5-methyl-3-[2-(trifluoromethyl)pyrimidin-4-yl]-1,3-oxazolidin-2-one
N50.1: tert-Butyl 4-(2-methyl-5-(5-methyl-2-oxooxazolidin-5-yl)pyrimidin-4-yl)piperidine-1-carboxylate

To a stirred solution of intermediate D17.2 (30 mg, 0.086 mmol), DIEA (33 mg, 0.257 mmol) and DCM (1 mL) was added triphosgene (10 mg, 0.034 mmol). The mixture was stirred at RT for 10 min. Saturated NaHCO3 was added and the mixture was stirred for 15 min. The reaction mixture was diluted with DCM and worked up, and purified on prep HPLC to give intermediate N50.1 (23 mg): MS (EI) for C19H28N4O4. found: 377.2. Analytical HPLC, ret. time=12.32 min, 97% purity.


N50.2: tert-Butyl 4-(2-methyl-5-(5-methyl-2-oxo-3-(2-(trifluoromethyl)pyrimidin-4-yl)oxazolidin-5-yl)pyrimidin-4-yl)piperidine-1-carboxylate

To solution of intermediate N50.1 (23 mg, 0.061 mmol) in DMAC was added NaH (60% in mineral oil, 24 mg) at RT with stirring. The resulting suspension was stirred at RT for 10 min, and cooled to 0° C., to which was added 4-chloro-2-(trifluoromethyl)pyrimidine (17 mg, 0.091 mmol). The reaction mixture was stirred at 0° C. for 30 min, and then saturated NH4Cl solution was added at 0° C. with stirring. The resulting mixture was diluted with MeOH and water, and then filtered. The filtrate was concentrated in vacuo. The residue was purified on prep HPLC to give intermediate N50.2 (23 mg) as a white solid. 1H-NMR (400 MHz, CDCl3): δ 8.78 (d, 1H), 8.74 (br. s, 1H), 8.38 (d, 1H), 4.89 (d, 1H), 4.45 (d, 1H), 4.33 (br. s, 2H), 2.88-2.72 (m, 3H), 2.71 (s, 3H), 2.12-2.01 (m 2H), 1.95 (s, 3H), 1.78-1.66 (m, 3H), 1.50 (s, 9H). MS (EI) for C24H29F3N6O4. found: 523.3 (MH+). Analytical HPLC, ret. time=20.76 min, 98% purity.


N50.3: 5-Methyl-5-(2-methyl-4-(piperidin-4-yl)pyrimidin-5-yl)-3-(2-(trifluoromethyl)pyrimidin-4-yl)oxazolidin-2-one hydrochloride salt

Intermediate N50.3 was made from the Boc deprotection of intermediate N50.2 using General Procedure 2.


Compound N50

Compound N50 was made from intermediate N50.3 and 2,6-difluorophenylacetic acid using General Procedure 4. 1H-NMR (400 MHz, CDCl3): δ 8.79 (d, 1H), 8.73 (br. s 1H), 8.38 (m, 1H), 7.24 (m, 1H), 6.96-6.90 (m, 2H), 4.84 (m, 1H), 4.60 (d, 2H), 4.48 (m, 1H), 4.20 (m, 1), 3.80 (m, 2H), 3.30 (t, 1H), 3.00 (m, 1H), 2.75 (m, 1H), 2.71 (s, 3H), 2.23-2.07 (m, 2H), 1.96 (s, 3H), 1.85-1.78 (m, 2H). MS (EI) for C27H25F5N6O3. found: 577.2 (MH+). Analytical HPLC, ret. time=18.5 min, 96% purity.


Compound N51: N-(2,6-Difluorophenyl)-4-{2-methyl-5-[2-({[6-(trifluoromethyl)pyridin-2-yl]oxy}methyl)oxetan-2-yl]pyrimidin-4-yl}piperidine-1-carboxamide
N51.1: tert-Butyl 4-(2-methyl-5-(2-((6-(trifluoromethyl)pyridin-2-yloxy)methyl)oxetan-2-yl)pyrimidin-4-yl)piperidine-1-carboxylate

To a 0° C. solution of intermediate N51.2 (134 mg, 0.25 mmol) and Et3N (80 mg, 0.76 mmol) in DCM (5 mL) was added MsCl (34 mg, 0.3 mmol). The mixture was stirred at rt for 1 h. THF was added (8 mL), followed by the addition of KOtBu (1.5 mL, 1 M in THF). The resulting solution was stirred at rt for 1 h. The mixture was diluted with DCM, washed with saturated NaHCO3, brine, and dried over anhydrous Na2SO4. Further purification by flash column chromatography gave intermediate N51.1 (102 mg, 80%).


N51.2: 4-Chloro-2-(2-methyl-4-(piperidin-4-yl)pyrimidin-5-yl)-1-(6-(trifluoromethyl)pyridin-2-yloxy)butan-2-ol

Intermediate N51.2 was made from the Boc deprotection of intermediate N51.1 using General Procedure 2.


N51.3: 4-(5-(4-Chloro-2-hydroxy-1-(6-(trifluoromethyl)pyridin-2-yloxy)butan-2-yl)-2-methylpyrimidin-4-yl)-N-(2,6-difluorophenyl)piperidine-1-carboxamide

Intermediate N51.3 was made from intermediate N51.2 and 2,6-difluorophenyl isocyanate using General Procedure 5.


Compound N51

To a solution intermediate N51.3 (40 mg, 0.07 mmol) in THF (5 mL) was added KOtBu (0.5 mL, 1 M in THF, 0.5 mmol). The mixture was stirred at rt for 2.5 h. EtOAc was added, the organic layer was washed with brine and dried over anhydrous Na2SO4. Further purification by flash column chromatography gave Compound N51 (7 mg, 17%). 1H NMR (400 MHz, DMSO-d6) δ 8.60 (s, 1H), 8.26 (s, 1H), 7.99 (t, 1H), 7.51 (d, 1H), 7.26 (m, 1H), 7.18 (d, 1H), 7.11 (m, 2H), 4.74 (d, 1H), 4.69 (m, 1H), 4.61 (d, 1H), 4.46 (m, 1H), 4.18 (m, 2H), 3.27 (m, 2H), 2.88 (m, 3H), 2.59 (s, 3H), 1.90 (m, 1H), 1.72 (m, 2H), 1.62 (d, 1H). MS (EI) for C27H26F5N5O3. found: 564.1 (MH+). Analytical HPLC, ret. time=13.42 min, 95% purity.


Compound N52: N-(2,6-Difluorophenyl)-4-{2-methyl-5-[2-oxo-5-({[6-(trifluoromethyl)pyridin-2-yl]oxy}methyl)-1,3-oxazolidin-5-yl]pyrimidin-4-yl}piperidine-1-carboxamide
N52.1: tert-Butyl 4-(2-methyl-5-(2-oxo-5-((6-(trifluoromethyl)pyridin-2-yloxy)methyl)oxazolidin-5-yl)pyrimidin-4-yl)piperidine-1-carboxylate

Intermediate N52.1 was synthesized from intermediate N36.1 using a method analogous to that used to synthesize intermediate N50.1 from intermediate D17.2.


N52.2: 5-(2-Methyl-4-(piperidin-4-yl)pyrimidin-5-yl)-5-((6-(trifluoromethyl)pyridin-2-yloxy)methyl)oxazolidin-2-one TFA salt

Intermediate N52.2 was made from the Boc Deprotection of intermediate N52.1 using General Procedure 2.


Compound N52

Compound N52 was synthesized from intermediate N52.2 and 2,6-difluorophenyl isocyanate using General Procedure 5. 1H-NMR (400 MHz, CDCl3): δ 8.8.74 (s, 1H), 7.79 (t, 1H), 7.35 (d, 1H), 7.13 (m, 1H), 7.00 (d, 1H), 6.95 (t, 2H), 5.92 (s, 1H), 5.09 (s, 1H), 4.96 (d, 1H), 4.59 (d, 1H), 4.33 (d, 1H), 4.32 (d, 1H), 4.22 (d, 1H), 3.82 (d, 1H), 3.14 (td, 1H), 3.02 (t, 2H), 2.72 (s, 3H), 2.28 (qd, 1H), 2.15 (qd, 1H), 1.84 (m, 1H), 1.74 (m, 1H). MS (EI) for C27H25F5N6O4. found 593.1 (MH+). Analytical HPLC, ret. time=12.308 min, 99% purity.


Example 2
General RORγ SPA Binding Assay

The binding of potential ligands to RORγ is measured by competition with [3H]25-hydroxycholesterol using a scintillation proximity assay (SPA) binding assay. The ligand binding domain of human RORγ (A262-S507) with an N-terminal His tag is expressed in E. coli and purified using nickel affinity chromotography. 50 nM RORγ (A262-S507) is incubated with test compound at varying concentrations for 15 min at room temperature in PBS buffer containing 0.5% fatty acid free BSA. O1 nM of [3H]25-hydroxycholesterol is then added, and the reaction is incubated for 15 min. 4 mg/mL of Ysi Copper HIS-TAG SPA Beads (Perkin Elmer) are added, and the mixture is incubated for 30 min. The reaction is read on a MicroBeta Trilux scintillation plate reader (Perkin Elmer). IC50 values are determined from the percentage inhibition of [3H]25-hydroxycholesterol binding.


IC50 values of the compounds of Tables 1-14 in the RORγ binding assay are provided in the Table, below.

















IC50



Compound
(nM)



















A1
4.7



A2
6.8



A3
7.2



A4
7.8



A5
8.9



A6
26.4



A7
28.1



A8
29.4



A9
31.6



A10
33.1



A11
49



A12
50



A13
52



A14
66



A15
70



A16
89



A17
93



A18
124



A19
155



A20
158



A21
209



A22
235



A23
254



A24
215



A25
267



A26
446



A27
719.7



A28
1034.6



A29
1087.9



A30
1445.6



A31
1630.4



A32
1690



A33
1952.8



A34
2687.4



A35
2966.3



A36
3327.1



A37
4200



A38
5306.4



A39
5453.1



A40
5.8



A41
4.8



A42
5.1



A43
5.4



A44
5.7



A45
6



A46
6.1



A47
6.3



A48
6.7



A49
6.8



A50
7.1



A51
7.2



A52
7.5



A53
8.1



A54
13.9



A55
19.2



A56
19.3



A57
21.8



A58
24.3



A59
25.5



A60
35



A61
38.2



A62
43.4



A63
63



A64
64



A65
69



A66
72



A67
85



A68
95



A69
144



A70
213



A71
242



A72
317



A73
426



A74
618.9



A75
750.3



A76
1123.5



A77
1337.5



A78
1794.6



A79
5263



A80
9.8



A81
5.2



A82
6.2



A83
45.8



A84
1652.7



A85
43.8



A86
7



A87
1.7



A88
5.4



A89
5.8



A90
6.3



A91
6.7



A92
10



A93
16



A94
25.4



A95
175



A96
202



A97
290



A98
398



A99
58



A100
433



A101
634.2



A102
1729.5



A103
3.4



A104
231



A105
551.5



A106
270



A107
12.1



A108
21.7



A109
7.3



A110
1438.6



A111
9.8



A112
33.6



A113
338



A114
3



A115
342



A116
37.1



A117
252.9



A118
51.6



A119
6.2



A120
6



A121
58.4



A122
116.4



A123
5.4



A124
11.4



A125
11.6



A126
15.2



B1
54



B2
444



B3
3.1



B4
137



B5
2.5



B6
1933.7



B7
10.6



B8
1504.4



B9
2.7



B10
1668.9



B11
1.7



B12
2.2



B13
4.7



B14
4.8



B15
5.1



B16
5.9



B17
9.3



B18
11.2



B19
13.9



B20
15.8



B21
23.7



B22
84



B23
8.4



B24
8.7



B25
11.2



B26
95



B27
35.8



B28
696.3



B29
3721.6



B30
9.7



B31
3.4



B32
15.3



B33
36.7



B34
12.5



B35
14.2



B36
157.9



B37
67.6



B38
169



B39
93.3



B40
21.4



B41
12.6



B42
150.5



B43
13.5



B44
84.9



B45
8



B46
105.9



B47
76.4



B48
240.9



B49
1970.5



B50
445



B51
8.6



B52
334



B53
35.1



B54
167.7



B55
5.8



B56
31.8



B57
92.7



B58
4093.7



B59
49.1



B60
114.9



B61
366.7



C1
114



C2
337



C3
605.9



C4
619.7



C5
6.3



C6
5.2



C7
218



C8
6.9



C9
7.8



C10
12.3



C11
15.5



C12
18.9



C13
19.4



C14
26.3



C15
102



C16
110



C17
161



C18
201



C19
269



C20
656.6



C21
3009.4



C22
3960.4



C23
5294.8



C24
276.9



C25
23.1



C26
234.7



C27
460.8



C28
65.2



C29
157.6



C30
49.7



C31
49.6



C32
159



C33
843.9



C34
87.1



C35
608.3



C36
154.7



C37
22.1



C38
8.0



C39
4519.9



C40
47.5



C41
20.5



C42
240.4



C43
11.2



C44
3.2



C45
42.8



C46
123.1



C47
80.6



C48
63.9



C49
23.3



C50
6.1



C51
10.5



C52
8.7



C53
37.3



C54
21.1



C55
19.2



C56
24.7



C57
23.6



C58
14.1



C59
27.9



C60
203.6



C61
1138.3



C62
157



C63
280.9



C64
182.6



C65
2727.6



C66
65.9



C67
110.7



C68
102.3



C69
30.8



C70
108.3



C71
30.2



D1
2.6



D2
3.9



D3
5



D4
6.1



D5
8.4



D6
23.3



D7
80



D8
105



D9
118



D10
4378



D11
14.5



D12
6.2



D13
8.9



D14
481



D15
33.9



D16
12.3



D17
88.8



D18
111.6



D19
196.4



D20
72.8



D21
47.7



D22
76.1



D23
18.5



D24
5



D25
8.7



D26
12.6



D27
3.6



D28
14.7



D29
14.4



D30
4.3



D31
118.9



D32
13.9



D33
14



D34
15



D35
14.8



D36
15.8



D37
112.3



D38
25.9



D39
5.1



D40
29.6



D41
100.8



D42
348



D43
22



D44
4.6



D45
3.4



D46
6.3



D47
52.9



D48
30.3



D49
7.2



D50
15



E1
6.3



E2
5.3



E3
6.2



E4
16.7



E5
10.6



E6
45.7



E7
63



E8
4.1



E9
6.2



E10
79



E11
19.2



E12
11



E13
13.2



E14
28



E15
56.5



F1
76



F2
26



F3
3.3



F4
195.2



F5
101.3



F6
44.2



F7
9.8



F8
1340.8



F9
29.9



G1
9.6



G2
4.6



G3
8.1



G4
12.1



H1
327



H2
49



H3
84



H4
294



H5
503



H6
1633



H7
1749



I1
40.3



I2
71



I3
10.7



I4
10.9



I5
69.3



I6
60.9



I7
653.9



I8
2289.6



J1
46



J2
28



J3
7.7



K1
4109



L1
81



M1
26



M2
18.6



M3
19.1



M4
6.5



M5
16.3



M6
12.2



M7
158.8



M8
1.7



M9
2



M10
5.3



M11
2.8



M12
6.2



M13
343.7



M14
485



N1
6.6



N2
19.5



N3
2.3



N4
12.1



N5
8.4



N6
4



N7
16.9



N8
4.8



N9
4.2



N10
20.9



N11
37



N12
69.5



N13
6.8



N14
4.1



N15
10.9



N16
1.9



N17
6.2



N18
16.2



N19
6.5



N20
21.2



N21
14.2



N22
7



N23
12.3



N24
9.3



N25
544.4



N26
140.7



N27
18.2



N28
71



N29
10000



N30
10.9



N31
620



N32
5.7



N33
2.9



N34
12.8



N35
5.5



N36
47.8



N37
36.9



N38
57.9



N39
84.1



N40
133.8



N41
150.2



N42
182.7



N43
9.2



N44
898.8



N45
81.9



N46
39



N47
3.6



N48
5.6



N49
176



N50
289.7



N51
4.9



N52
13.8









Claims
  • 1. A compound having the structural formula
  • 2. The compound, stereoisomeric form, N-oxide, pharmaceutically acceptable salt, solvate or hydrate according to claim 1, having the formula
  • 3. The compound, stereoisomeric form, N-oxide, pharmaceutically acceptable salt, solvate or hydrate according to claim 1, wherein R1 is —H, —(C1-C2)alkyl, -cyclopropyl, —O—(C1-C3)alkyl, —S—(C1-C2)alkyl, —NH2, —NH—(C1-C3)alkyl or —N((C1-C2)alkyl)2.
  • 4. The compound, stereoisomeric form, N-oxide, pharmaceutically acceptable salt, solvate or hydrate according to claim 1, wherein R2 is —H, —(C1-C2)alkyl, —(C1-C2)fluoroalkyl, —(C3-C4)cycloalkyl, —O—(C1-C2)alkyl, —S—(C1-C2)alkyl, —NH—(C1-C2)alkyl and —N((C1-C2)alkyl)2.
  • 5. The compound, stereoisomeric form, N-oxide, pharmaceutically acceptable salt, solvate or hydrate according to claim 1, wherein the bond denoted by “q” is a single bond, both R4 are H, and R5 is H; the bond denoted by “q” is a double bond, both R4 are H, and R5 is H; the bond denoted by “q” is a single bond, both R4 are H, and R5 is F; or the bond denoted by “q” is a single bond, both R4 are F, and R5 is H.
  • 6. The compound, stereoisomeric form, N-oxide, pharmaceutically acceptable salt, solvate or hydrate according to claim 1, wherein G is —CH2—.
  • 7. The compound, stereoisomeric form, N-oxide, pharmaceutically acceptable salt, solvate or hydrate according to claim 1, wherein y is at least one and each R6 is independently -halogen, —(C1-C2 fluoroalkyl) or —O—(C1-C2 fluoroalkyl).
  • 8. The compound, stereoisomeric form, N-oxide, pharmaceutically acceptable salt, solvate or hydrate according to claim 1, wherein L is —C(O)—NH—CH2—, —C(O)—NH—CHD- or —C(O)—NH—CD2-.
  • 9. The compound, stereoisomeric form, N-oxide, pharmaceutically acceptable salt, solvate or hydrate according to claim 1, wherein L is
  • 10. The compound, stereoisomeric form, N-oxide, pharmaceutically acceptable salt, solvate or hydrate according to claim 1, wherein the ring system denoted by “A” is phenyl.
  • 11. The compound, stereoisomeric form, N-oxide, pharmaceutically acceptable salt, solvate or hydrate according to claim 1, wherein the ring system denoted by “A” is pyridyl or pyrimidyl.
  • 12. The compound, stereoisomeric form, N-oxide, pharmaceutically acceptable salt, solvate or hydrate according to claim 1, wherein each Ra is independently -halogen, —(C1-C2)alkyl, —(C1-C2)fluoroalkyl, —O—(C1-C2)alkyl, —O—(C1-C2)fluoroalkyl, —CN or —NO2.
  • 13. The compound according to claim 1, having the structural formula
  • 14. A pharmaceutical composition comprising a compound, stereoisomeric form, N-oxide, pharmaceutically acceptable salt, solvate or hydrate according to claim 1, and a pharmaceutically acceptable carrier, excipient or diluent.
  • 15. A method of diagnosing, preventing or treating a disease or disorder selected from an autoimmune disease or disorder, asthma, an allergic disease or disorder, a metabolic disease or disorder, and cancer in a subject, the method comprising administering to the subject a therapeutically-effective amount of a compound, stereoisomeric form, N-oxide, pharmaceutically acceptable salt, solvate or hydrate according to claim 1, or a pharmaceutical composition according to claim 14.
CROSS-REFERENCE TO RELATED APPLICATIONS

This application claims the benefit of priority of U.S. Provisional Patent Application Ser. No. 61/716,244, filed Oct. 19, 2012; and U.S. Provisional Patent Application Ser. No. 61/716,233, filed Oct. 19, 2012, each of which is hereby incorporated herein by reference in its entirety.

PCT Information
Filing Document Filing Date Country Kind
PCT/US2013/065480 10/17/2013 WO 00
Provisional Applications (2)
Number Date Country
61716244 Oct 2012 US
61716233 Oct 2012 US