1. Field of the Invention
The field of the invention is data processing, or, more specifically, methods, apparatus, and products for runtime optimization of an application executing on a parallel computer.
2. Description of Related Art
The development of the EDVAC computer system of 1948 is often cited as the beginning of the computer era. Since that time, computer systems have evolved into extremely complicated devices. Today's computers are much more sophisticated than early systems such as the EDVAC. Computer systems typically include a combination of hardware and software components, application programs, operating systems, processors, buses, memory, input/output devices, and so on. As advances in semiconductor processing and computer architecture push the performance of the computer higher and higher, more sophisticated computer software has evolved to take advantage of the higher performance of the hardware, resulting in computer systems today that are much more powerful than just a few years ago.
Parallel computing is an area of computer technology that has experienced advances. Parallel computing is the simultaneous execution of the same task (split up and specially adapted) on multiple processors in order to obtain results faster. Parallel computing is based on the fact that the process of solving a problem usually can be divided into smaller tasks, which may be carried out simultaneously with some coordination.
Parallel computers execute parallel algorithms. A parallel algorithm can be split up to be executed a piece at a time on many different processing devices, and then put back together again at the end to get a data processing result. Some algorithms are easy to divide up into pieces. Splitting up the job of checking all of the numbers from one to a hundred thousand to see which are primes could be done, for example, by assigning a subset of the numbers to each available processor, and then putting the list of positive results back together. In this specification, the multiple processing devices that execute the individual pieces of a parallel program are referred to as ‘compute nodes.’ A parallel computer is composed of compute nodes and other processing nodes as well, including, for example, input/output (‘I/O’) nodes, and service nodes.
Parallel algorithms are valuable because it is faster to perform some kinds of large computing tasks via a parallel algorithm than it is via a serial (non-parallel) algorithm, because of the way modern processors work. It is far more difficult to construct a computer with a single fast processor than one with many slow processors with the same throughput. There are also certain theoretical limits to the potential speed of serial processors. On the other hand, every parallel algorithm has a serial part and so parallel algorithms have a saturation point. After that point adding more processors does not yield any more throughput but only increases the overhead and cost.
Parallel algorithms are designed also to optimize one more resource the data communications requirements among the nodes of a parallel computer. There are two ways parallel processors communicate, shared memory or message passing. Shared memory processing needs additional locking for the data and imposes the overhead of additional processor and bus cycles and also serializes some portion of the algorithm.
Message passing processing uses high-speed data communications networks and message buffers, but this communication adds transfer overhead on the data communications networks as well as additional memory need for message buffers and latency in the data communications among nodes. Designs of parallel computers use specially designed data communications links so that the communication overhead will be small but it is the parallel algorithm that decides the volume of the traffic.
Many data communications network architectures are used for message passing among nodes in parallel computers. Compute nodes may be organized in a network as a ‘torus’ or ‘mesh,’ for example. Also, compute nodes may be organized in a network as a tree. A torus network connects the nodes in a three-dimensional mesh with wrap around links. Every node is connected to its six neighbors through this torus network, and each node is addressed by its x,y,z coordinate in the mesh. In such a manner, a torus network lends itself to point to point operations. In a tree network, the nodes typically are connected into a binary tree: each node has a parent, and two children (although some nodes may only have zero children or one child, depending on the hardware configuration). Although a tree network typically is inefficient in point to point communication, a tree network does provide high bandwidth and low latency for certain collective operations, message passing operations where all compute nodes participate simultaneously, such as, for example, an allgather operation. In computers that use a torus and a tree network, the two networks typically are implemented independently of one another, with separate routing circuits, separate physical links, and separate message buffers.
Collective operations that involve data communications amongst many compute nodes may be carried out with a variety of algorithms. That is, the end result of a collective operation may be achieved in various ways. Some algorithms may provide better performance than other algorithms when operating in particular configurations. What is needed therefore is a way to optimize the selection of the best performing algorithm or set of algorithms to carry out collective operations in particular operating configurations.
Methods, apparatus, and products for runtime optimization of an application executing on a parallel computer are disclosed. In embodiments of the present invention, the parallel computer is configured with a number of compute nodes organized into a communicator and runtime optimization includes: identifying, by each compute node during application runtime, a collective operation within the application; identifying, by each compute node, a call site of the collective operation in the application; and determining, by each compute node, whether the collective operation is root-based. If the collective operation is not root-based the runtime optimization according to embodiments of the present invention includes establishing a tuning session administered by a self tuning module for the collective operation in dependence upon an identifier of the call site of the collective operation and executing the collective operation in the tuning session. If the collective operation is root-based, the runtime optimization according to embodiments of the present invention includes determining whether all compute nodes executing the application identified the collective operation at the same call site.
If all compute nodes executing the application identified the collective operation at the same call site, the runtime optimization according to embodiments of the present invention includes establishing a tuning session administered by the self tuning module for the collective operation in dependence upon the identifier of the call site of the collective operation and executing the collective operation in the tuning session. If all compute nodes executing the application did not identify the collective operation at the same call site, the runtime optimization according to embodiments of the present invention includes executing the collective operation without establishing a tuning session.
The foregoing and other objects, features and advantages of the invention will be apparent from the following more particular descriptions of exemplary embodiments of the invention as illustrated in the accompanying drawings wherein like reference numbers generally represent like parts of exemplary embodiments of the invention.
Exemplary methods, apparatus, and products for runtime optimization of an application executing on a parallel computer in accordance with embodiments of the present invention are described with reference to the accompanying drawings, beginning with
The compute nodes (102) are coupled for data communications by several independent data communications networks including a Joint Test Action Group (‘JTAG’) network (104), a global combining network (106) which is optimized for collective operations, and a torus network (108) which is optimized point to point operations. The global combining network (106) is a data communications network that includes data communications links connected to the compute nodes so as to organize the compute nodes as a tree. Each data communications network is implemented with data communications links among the compute nodes (102). The data communications links provide data communications for parallel operations among the compute nodes of the parallel computer. The links between compute nodes are bi-directional links that are typically implemented using two separate directional data communications paths.
In addition, the compute nodes (102) of parallel computer are organized into at least one operational group (132) of compute nodes for collective parallel operations on parallel computer (100). An operational group of compute nodes is the set of compute nodes upon which a collective parallel operation executes. Collective operations are implemented with data communications among the compute nodes of an operational group. Collective operations are those functions that involve all the compute nodes of an operational group. A collective operation is an operation, a message-passing computer program instruction that is executed simultaneously, that is, at approximately the same time, by all the compute nodes in an operational group of compute nodes. Such an operational group may include all the compute nodes in a parallel computer (100) or a subset all the compute nodes. Collective operations are often built around point to point operations. A collective operation requires that all processes on all compute nodes within an operational group call the same collective operation with matching arguments. A ‘broadcast’ is an example of a collective operation for moving data among compute nodes of an operational group. A ‘reduce’ operation is an example of a collective operation that executes arithmetic or logical functions on data distributed among the compute nodes of an operational group. An operational group may be implemented as, for example, an MPI ‘communicator.’
‘MPI’ refers to ‘Message Passing Interface,’ a prior art parallel communications library, a module of computer program instructions for data communications on parallel computers. Examples of prior-art parallel communications libraries that may be improved for use with systems according to embodiments of the present invention include MPI and the ‘Parallel Virtual Machine’ (‘PVM’) library. PVM was developed by the University of Tennessee, The Oak Ridge National Laboratory, and Emory University. MPI is promulgated by the MPI Forum, an open group with representatives from many organizations that define and maintain the MPI standard. MPI at the time of this writing is a de facto standard for communication among compute nodes running a parallel program on a distributed memory parallel computer. This specification sometimes uses MPI terminology for ease of explanation, although the use of MPI as such is not a requirement or limitation of the present invention.
Some collective operations have a single originating or receiving process running on a particular compute node in an operational group. For example, in a ‘broadcast’ collective operation, the process on the compute node that distributes the data to all the other compute nodes is an originating process. In a ‘gather’ operation, for example, the process on the compute node that received all the data from the other compute nodes is a receiving process. The compute node on which such an originating or receiving process runs is referred to as a logical root.
Most collective operations are variations or combinations of four basic operations: broadcast, gather, scatter, and reduce. The interfaces for these collective operations are defined in the MPI standards promulgated by the MPI Forum. Algorithms for executing collective operations, however, are not defined in the MPI standards. In a broadcast operation, all processes specify the same root process, whose buffer contents will be sent. Processes other than the root specify receive buffers. After the operation, all buffers contain the message from the root process.
In a scatter operation, the logical root divides data on the root into segments and distributes a different segment to each compute node in the operational group. In scatter operation, all processes typically specify the same receive count. The send arguments are only significant to the root process, whose buffer actually contains sendcount*N elements of a given data type, where N is the number of processes in the given group of compute nodes. The send buffer is divided and dispersed to all processes (including the process on the logical root). Each compute node is assigned a sequential identifier termed a ‘rank.’ After the operation, the root has sent sendcount data elements to each process in increasing rank order. Rank 0 receives the first sendcount data elements from the send buffer. Rank 1 receives the second sendcount data elements from the send buffer, and so on.
A gather operation is a many-to-one collective operation that is a complete reverse of the description of the scatter operation. That is, a gather is a many-to-one collective operation in which elements of a datatype are gathered from the ranked compute nodes into a receive buffer in a root node.
A reduce operation is also a many-to-one collective operation that includes an arithmetic or logical function performed on two data elements. All processes specify the same ‘count’ and the same arithmetic or logical function. After the reduction, all processes have sent count data elements from computer node send buffers to the root process. In a reduction operation, data elements from corresponding send buffer locations are combined pair-wise by arithmetic or logical operations to yield a single corresponding element in the root process's receive buffer. Application specific reduction operations can be defined at runtime. Parallel communications libraries may support predefined operations. MPI, for example, provides the following pre-defined reduction operations:
In addition to compute nodes, the parallel computer (100) includes input/output (‘I/O’) nodes (110, 114) coupled to compute nodes (102) through the global combining network (106). The compute nodes in the parallel computer (100) are partitioned into processing sets such that each compute node in a processing set is connected for data communications to the same I/O node. Each processing set, therefore, is composed of one I/O node and a subset of compute nodes (102). The ratio between the number of compute nodes to the number of I/O nodes in the entire system typically depends on the hardware configuration for the parallel computer. For example, in some configurations, each processing set may be composed of eight compute nodes and one I/O node. In some other configurations, each processing set may be composed of sixty-four compute nodes and one I/O node. Such example are for explanation only, however, and not for limitation. Each I/O nodes provide I/O services between compute nodes (102) of its processing set and a set of I/O devices. In the example of
The parallel computer (100) of
As described in more detail below in this specification, the system of
The system of
The system of
The system of
In a tuning session a self tuning module iteratively, for a number of different algorithm, selects one or more algorithms to carry out a collective operation and records performance metrics of the operation of the executed collective operation. One example of a prior art self tuning module that may modified for runtime optimization in accordance with embodiments of present invention is the Self Tuned Adaptive Routines (‘STAR’) for MPI. STAR is a library of routines that, when linked with an MPI application, is capable of identifying an optimized communication algorithm for collective operation running within an application on a particular operating platform. The STAR library typically includes two components: a repository of algorithms and an automatic algorithm selection mechanism that is configured to select an algorithm for a collective operation of an application and/or platform that meets predefined criteria. When an MPI application invokes, at runtime, a collective operation iteratively many times, the STAR routine that realizes that operation utilizes a different algorithm or set of algorithms from the repository component of the STAR library to complete each iterative invocation of the collective operation. Each subsequent invocation of the collective operation causes the STAR routine to examine a different algorithm to carry out the collective operations, dynamically at runtime. Once all algorithms have been examined, the STAR automatic selection mechanism selects an algorithm or set of algorithms for which the performance of the execution of the collective operation met predefined performance criteria. One primary advantage to STAR is that STAR collects performance measurements of an execution of a collective operation implemented with a particular algorithm or set of algorithms, in the context of an application platform, enabling an increased accuracy and precision of measured performance.
Prior art implementations of STAR, however, provide several drawbacks. The output of STAR after collecting performance measurements and selecting algorithms, is a log file that a user must manually process to make use of. In addition, root-based MPI operations, such as a ‘broadcast’ or ‘allreduce’ operation, may hinder STAR because the root of the collective may have a call site different from other nodes for the same root-based collective. That is, call sites among the compute nodes may be different for the same root-based collective operation.
STAR also requires users or application developers to modify the application source code, including adding an extra parameter, a call site identifier, to an MPI collective operation being invoked. Because MPI collective routines may be invoked in several call sites within an application because STAR differentiates amongst call sites, the caller of a collective operation for which STAR is to tune must inform STAR of the current call site. Prior art implementations of STAR achieve this by modifying the application source code to include a unique identifier for each call site. Such modification may be inefficient and require a greater amount of computing overhead than necessary. Further, prior art implementation of STAR tune all collective operations at all message sizes and for all communicators, rather than providing tuning for a subset of collective operations.
The arrangement of nodes, networks, and I/O devices making up the exemplary system illustrated in
Runtime optimization of an application executing on a parallel computer according to embodiments of the present invention may be generally implemented on a parallel computer that includes a plurality of compute nodes. In fact, such computers may include thousands of such compute nodes. Each compute node is in turn itself a kind of computer composed of one or more computer processors (or processing cores), its own computer memory, and its own input/output adapters. For further explanation, therefore,
Also stored in RAM (156) is a messaging module (160), a library of computer program instructions that carry out parallel communications among compute nodes, including point to point operations as well as collective operations. Application program (158) executes collective operations by calling software routines in the messaging module (160). A library of parallel communications routines may be developed from scratch for use in systems according to embodiments of the present invention, using a traditional programming language such as the C programming language, and using traditional programming methods to write parallel communications routines that send and receive data among nodes on two independent data communications networks. Alternatively, existing prior art libraries may be improved to operate according to embodiments of the present invention. Examples of prior-art parallel communications libraries include the ‘Message Passing Interface’ (‘MPI’) library and the ‘Parallel Virtual Machine’ (‘PVM’) library.
Also stored in RAM (156) is a self tuning module (212), a module of computer program instructions that carries out runtime optimization of the application (208) on the parallel computer of which the compute node (152) is a part. The self tuning module (212) prior to runtime is linked with the application (208) in such a way that the application, when executing, calls collective operations through a call to a library function provided by the self tuning module (212) rather than a typical call to the messaging module (160). At runtime of the application (208), therefore, when the application (208) identifies a collective operation (210), that ‘encounters’ a collective operation, within the application, the compute node (152), through the self tuning module (212), identifies a call site (214) of the collective operation (210) in the application (208).
The example compute node (152) of
If the collective operation is root-based, the example compute node (152) of
During finalization of the application (208), the self tuning module (212) may select, for a particular collective operation of the application, such as collective operation (210), in dependence upon one or more tuning sessions (216) for the particular collective operation, one or more algorithms to carry out the particular collective operation upon subsequent executions of the application (208). The one or more algorithms selected to carry out the particular collective operation represent an optimized set of algorithms (including one or more algorithms) to carry out the particular collective operation. The self tuning module (212) may record the one or more selected algorithms. In the example compute node (152) of
Also stored in RAM (156) is an operating system (162), a module of computer program instructions and routines for an application program's access to other resources of the compute node. It is typical for an application program and parallel communications library in a compute node of a parallel computer to run a single thread of execution with no user login and no security issues because the thread is entitled to complete access to all resources of the node. The quantity and complexity of tasks to be performed by an operating system on a compute node in a parallel computer therefore are smaller and less complex than those of an operating system on a serial computer with many threads running simultaneously. In addition, there is no video I/O on the compute node (152) of
The exemplary compute node (152) of
The data communications adapters in the example of
The data communications adapters in the example of
The data communications adapters in the example of
The data communications adapters in the example of
Example compute node (152) includes two arithmetic logic units (‘ALUs’). ALU (166) is a component of each processing core (164), and a separate ALU (170) is dedicated to the exclusive use of Global Combining Network Adapter (188) for use in performing the arithmetic and logical functions of reduction operations. Computer program instructions of a reduction routine in parallel communications library (160) may latch an instruction for an arithmetic or logical function into instruction register (169). When the arithmetic or logical function of a reduction operation is a ‘sum’ or a ‘logical or,’ for example, Global Combining Network Adapter (188) may execute the arithmetic or logical operation by use of ALU (166) in processor (164) or, typically much faster, by use dedicated ALU (170).
The example compute node (152) of
For further explanation,
For further explanation,
For further explanation,
For further explanation,
In the example of
For further explanation,
The method of
If the collective operation is root-based, the method of
For further explanation,
The method of
In the method of
For further explanation,
The method of
In the pseudocode example above, the compute node declares two arrays each having two elements: ‘tmp’ and ‘result.’ In the first element of ‘tmp,’ the compute node stores the present value of the call site identifier of the collective operation. In the second element ‘tmp,’ the compute node stores the negative of the call site identifier. The allreduce function includes as parameters, the source or send buffer, ‘tmp,’ the number of elements of the send buffer, two, the data type of elements, and the communicator identifier. The allreduce operation when executed finds the maximum value of the positive call site identifier among all compute nodes in the communicator and the maximum value of the negative call site identifier among all compute nodes in the communicator. The maximum of the negative call site identifiers among all compute nodes is the negative of the minimum call side identifier among all compute nodes. The results of the allreduce, the maximum of the positive call site IDs and the maximum of the negative call site IDs, is stored in the compute node's receive buffer—the ‘result’ array. The compute node then determines if the maximum call site identifier among all compute nodes (the first element of the ‘result’ array) is not equal to the negative maximum of the negative call site identifiers (the second element in the ‘result’ array and the minimum call site identifier). If the two are not equal, then at least one compute node identified the collective operation at a different call site. Readers of skill in the art will recognize, that although the above pseudocode example utilizes the MPI_Max operation, the MPI_Min operation, finding the minimum rather than the maximum, may be utilized to achieve the same results.
For further explanation,
The method of
Further explanation of the recording (904) and carrying out (902) of the application of
In the method of
Also in the method of
As will be appreciated by one skilled in the art, aspects of the present invention may be embodied as a system, method or computer program product. Accordingly, aspects of the present invention may take the form of an entirely hardware embodiment, an entirely software embodiment (including firmware, resident software, micro-code, etc.) or an embodiment combining software and hardware aspects that may all generally be referred to herein as a “circuit,” “module” or “system.” Furthermore, aspects of the present invention may take the form of a computer program product embodied in one or more computer readable medium(s) having computer readable program code embodied thereon.
Any combination of one or more computer readable medium(s) may be utilized. The computer readable medium may be a computer readable signal medium or a computer readable storage medium. A computer readable storage medium may be, for example, but not limited to, an electronic, magnetic, optical, electromagnetic, infrared, or semiconductor system, apparatus, or device, or any suitable combination of the foregoing. More specific examples (a non-exhaustive list) of the computer readable storage medium would include the following: an electrical connection having one or more wires, a portable computer diskette, a hard disk, a random access memory (RAM), a read-only memory (ROM), an erasable programmable read-only memory (EPROM or Flash memory), an optical fiber, a portable compact disc read-only memory (CD-ROM), an optical storage device, a magnetic storage device, or any suitable combination of the foregoing. In the context of this document, a computer readable storage medium may be any tangible medium that can contain, or store a program for use by or in connection with an instruction execution system, apparatus, or device.
A computer readable signal medium may include a propagated data signal with computer readable program code embodied therein, for example, in baseband or as part of a carrier wave. Such a propagated signal may take any of a variety of forms, including, but not limited to, electro-magnetic, optical, or any suitable combination thereof. A computer readable signal medium may be any computer readable medium that is not a computer readable storage medium and that can communicate, propagate, or transport a program for use by or in connection with an instruction execution system, apparatus, or device.
Program code embodied on a computer readable medium may be transmitted using any appropriate medium, including but not limited to wireless, wireline, optical fiber cable, RF, etc., or any suitable combination of the foregoing.
Computer program code for carrying out operations for aspects of the present invention may be written in any combination of one or more programming languages, including an object oriented programming language such as Java, Smalltalk, C++ or the like and conventional procedural programming languages, such as the “C” programming language or similar programming languages. The program code may execute entirely on the user's computer, partly on the user's computer, as a stand-alone software package, partly on the user's computer and partly on a remote computer or entirely on the remote computer or server. In the latter scenario, the remote computer may be connected to the user's computer through any type of network, including a local area network (LAN) or a wide area network (WAN), or the connection may be made to an external computer (for example, through the Internet using an Internet Service Provider).
Aspects of the present invention are described above with reference to flowchart illustrations and/or block diagrams of methods, apparatus (systems) and computer program products according to embodiments of the invention. It will be understood that each block of the flowchart illustrations and/or block diagrams, and combinations of blocks in the flowchart illustrations and/or block diagrams, can be implemented by computer program instructions. These computer program instructions may be provided to a processor of a general purpose computer, special purpose computer, or other programmable data processing apparatus to produce a machine, such that the instructions, which execute via the processor of the computer or other programmable data processing apparatus, create means for implementing the functions/acts specified in the flowchart and/or block diagram block or blocks.
These computer program instructions may also be stored in a computer readable medium that can direct a computer, other programmable data processing apparatus, or other devices to function in a particular manner, such that the instructions stored in the computer readable medium produce an article of manufacture including instructions which implement the function/act specified in the flowchart and/or block diagram block or blocks.
The computer program instructions may also be loaded onto a computer, other programmable data processing apparatus, or other devices to cause a series of operational steps to be performed on the computer, other programmable apparatus or other devices to produce a computer implemented process such that the instructions which execute on the computer or other programmable apparatus provide processes for implementing the functions/acts specified in the flowchart and/or block diagram block or blocks.
The flowchart and block diagrams in the Figures illustrate the architecture, functionality, and operation of possible implementations of systems, methods and computer program products according to various embodiments of the present invention. In this regard, each block in the flowchart or block diagrams may represent a module, segment, or portion of code, which comprises one or more executable instructions for implementing the specified logical function(s). It should also be noted that, in some alternative implementations, the functions noted in the block may occur out of the order noted in the figures. For example, two blocks shown in succession may, in fact, be executed substantially concurrently, or the blocks may sometimes be executed in the reverse order, depending upon the functionality involved. It will also be noted that each block of the block diagrams and/or flowchart illustration, and combinations of blocks in the block diagrams and/or flowchart illustration, can be implemented by special purpose hardware-based systems that perform the specified functions or acts, or combinations of special purpose hardware and computer instructions.
It will be understood from the foregoing description that modifications and changes may be made in various embodiments of the present invention without departing from its true spirit. The descriptions in this specification are for purposes of illustration only and are not to be construed in a limiting sense. The scope of the present invention is limited only by the language of the following claims.
This application is a continuation application of and claims priority from U.S. patent application Ser. No. 12/760,111, filed on Apr. 14, 2010 and U.S. patent application Ser. No. 13/663,545, filed on Oct. 30, 2012.
This invention was made with Government support under Contract No. B554331 awarded by the Department of Energy. The Government has certain rights in this invention.
Number | Name | Date | Kind |
---|---|---|---|
4860201 | Stolfo et al. | Aug 1989 | A |
4910669 | Gorin et al. | Mar 1990 | A |
5050162 | Golestani | Sep 1991 | A |
5063562 | Barzilai et al. | Nov 1991 | A |
5095444 | Motles | Mar 1992 | A |
5218676 | Ben-Ayed et al. | Jun 1993 | A |
5347450 | Nugent | Sep 1994 | A |
5414839 | Joshi | May 1995 | A |
5491691 | Shtayer et al. | Feb 1996 | A |
5651099 | Konsella | Jul 1997 | A |
5815793 | Ferguson | Sep 1998 | A |
5826262 | Bui et al. | Oct 1998 | A |
5826265 | Van Huben et al. | Oct 1998 | A |
5835482 | Allen | Nov 1998 | A |
5859981 | Levin et al. | Jan 1999 | A |
5862381 | Advani et al. | Jan 1999 | A |
5875190 | Law | Feb 1999 | A |
5912893 | Rolfe et al. | Jun 1999 | A |
5918020 | Blackard et al. | Jun 1999 | A |
5933425 | Iwata | Aug 1999 | A |
5937201 | Matsushita et al. | Aug 1999 | A |
5953336 | Moore et al. | Sep 1999 | A |
5982771 | Caldara et al. | Nov 1999 | A |
5995503 | Crawley et al. | Nov 1999 | A |
5999734 | Willis et al. | Dec 1999 | A |
6006032 | Blandy et al. | Dec 1999 | A |
6047122 | Spiller | Apr 2000 | A |
6057839 | Advani et al. | May 2000 | A |
6101495 | Tsuchida et al. | Aug 2000 | A |
6115357 | Packer et al. | Sep 2000 | A |
6118777 | Sylvain | Sep 2000 | A |
6126331 | Komatsu et al. | Oct 2000 | A |
6167490 | Levy et al. | Dec 2000 | A |
6182183 | Wingard et al. | Jan 2001 | B1 |
6253372 | Komatsu et al. | Jun 2001 | B1 |
6336143 | Diedrich et al. | Jan 2002 | B1 |
6343339 | Daynes | Jan 2002 | B1 |
6438702 | Hodge | Aug 2002 | B1 |
6490566 | Schmidt | Dec 2002 | B1 |
6493637 | Steeg | Dec 2002 | B1 |
6563823 | Przygienda et al. | May 2003 | B1 |
6600721 | Edholm | Jul 2003 | B2 |
6601098 | Case et al. | Jul 2003 | B1 |
6633937 | Thomson | Oct 2003 | B2 |
6687247 | Wilford et al. | Feb 2004 | B1 |
6725313 | Wingard et al. | Apr 2004 | B1 |
6742044 | Aviani et al. | May 2004 | B1 |
6748413 | Bournas | Jun 2004 | B1 |
6772255 | Daynes | Aug 2004 | B2 |
6775703 | Burns et al. | Aug 2004 | B1 |
6836480 | Basso et al. | Dec 2004 | B2 |
6839768 | Ma et al. | Jan 2005 | B2 |
6839829 | Daruwalla et al. | Jan 2005 | B1 |
6894974 | Aweva et al. | May 2005 | B1 |
6901052 | Buskirk et al. | May 2005 | B2 |
6952692 | Bhattiprolu et al. | Oct 2005 | B1 |
6990529 | Yang et al. | Jan 2006 | B2 |
7032224 | Kadakia et al. | Apr 2006 | B2 |
7120712 | Wingard et al. | Oct 2006 | B2 |
7197577 | Nellitheertha | Mar 2007 | B2 |
7216217 | Hansen et al. | May 2007 | B2 |
7286471 | Kloth et al. | Oct 2007 | B2 |
7299155 | Ebert et al. | Nov 2007 | B2 |
7301541 | Hansen et al. | Nov 2007 | B2 |
7458077 | Duke | Nov 2008 | B2 |
7466652 | Lau et al. | Dec 2008 | B2 |
7478138 | Chang et al. | Jan 2009 | B2 |
7480298 | Blackmore et al. | Jan 2009 | B2 |
7509244 | Shakeri et al. | Mar 2009 | B1 |
7527558 | Lavoie et al. | May 2009 | B2 |
7539209 | Pelley | May 2009 | B2 |
7647441 | Wingard et al. | Jan 2010 | B2 |
7684332 | Ray et al. | Mar 2010 | B2 |
7738443 | Kumar | Jun 2010 | B2 |
7743382 | Schumacher et al. | Jun 2010 | B2 |
7813369 | Blackmore et al. | Oct 2010 | B2 |
7913369 | Gakovic | Mar 2011 | B2 |
7953085 | Chang et al. | May 2011 | B2 |
7958183 | Arimilli et al. | Jun 2011 | B2 |
8041969 | Archer et al. | Oct 2011 | B2 |
8055879 | Archer et al. | Nov 2011 | B2 |
8087025 | Graupner | Dec 2011 | B1 |
8195152 | Edwards | Jun 2012 | B1 |
20010047458 | Iizuka | Nov 2001 | A1 |
20020065930 | Rhodes | May 2002 | A1 |
20020194392 | Cheng et al. | Dec 2002 | A1 |
20030004699 | Choi et al. | Jan 2003 | A1 |
20030021287 | Lee et al. | Jan 2003 | A1 |
20030074142 | Steeg | Apr 2003 | A1 |
20030093254 | Frankel et al. | May 2003 | A1 |
20030093255 | Freyensee et al. | May 2003 | A1 |
20040001508 | Zheng et al. | Jan 2004 | A1 |
20040015494 | Basso et al. | Jan 2004 | A1 |
20040098373 | Bayliss et al. | May 2004 | A1 |
20040107240 | Zabarski et al. | Jun 2004 | A1 |
20040111398 | England et al. | Jun 2004 | A1 |
20040246897 | Ma et al. | Dec 2004 | A1 |
20040255002 | Kota et al. | Dec 2004 | A1 |
20050053034 | Chiueh | Mar 2005 | A1 |
20050138161 | McDaniel et al. | Jun 2005 | A1 |
20050182834 | Black | Aug 2005 | A1 |
20050278453 | Cherkasova | Dec 2005 | A1 |
20060002424 | Gadde | Jan 2006 | A1 |
20060018283 | Lewis et al. | Jan 2006 | A1 |
20060059196 | Sato et al. | Mar 2006 | A1 |
20060075067 | Blackmore et al. | Apr 2006 | A1 |
20060107262 | Bodas et al. | May 2006 | A1 |
20060203739 | Padmanabhan et al. | Sep 2006 | A1 |
20060292292 | Brightman et al. | Dec 2006 | A1 |
20070014316 | Ryu et al. | Jan 2007 | A1 |
20070016589 | Hara et al. | Jan 2007 | A1 |
20070094429 | Wingard et al. | Apr 2007 | A1 |
20070121511 | Morandin | May 2007 | A1 |
20070179760 | Smith | Aug 2007 | A1 |
20070260746 | Mirtorabi et al. | Nov 2007 | A1 |
20070294426 | Huang et al. | Dec 2007 | A1 |
20080016249 | Ellis et al. | Jan 2008 | A1 |
20080109569 | Leonard et al. | May 2008 | A1 |
20080126739 | Archer et al. | May 2008 | A1 |
20080168177 | Subramaniam | Jul 2008 | A1 |
20080240115 | Briscoe et al. | Oct 2008 | A1 |
20080306721 | Yang | Dec 2008 | A1 |
20080310350 | Dykema et al. | Dec 2008 | A1 |
20080313376 | Archer et al. | Dec 2008 | A1 |
20080313661 | Blocksome et al. | Dec 2008 | A1 |
20090003344 | Kumar | Jan 2009 | A1 |
20090006808 | Blumrich et al. | Jan 2009 | A1 |
20090006810 | Almasi et al. | Jan 2009 | A1 |
20090037707 | Blocksome | Feb 2009 | A1 |
20090043988 | Archer et al. | Feb 2009 | A1 |
20090067334 | Archer et al. | Mar 2009 | A1 |
20090089328 | Miller | Apr 2009 | A1 |
20090092075 | Corson et al. | Apr 2009 | A1 |
20090113308 | Almasi et al. | Apr 2009 | A1 |
20090125604 | Chang et al. | May 2009 | A1 |
20090129277 | Supalov et al. | May 2009 | A1 |
20090138892 | Almasi et al. | May 2009 | A1 |
20090196282 | Fellman et al. | Aug 2009 | A1 |
20090201832 | Brown | Aug 2009 | A1 |
20090300154 | Branson et al. | Dec 2009 | A1 |
20100005189 | Archer et al. | Jan 2010 | A1 |
20100017492 | Reistad | Jan 2010 | A1 |
20100023631 | Archer et al. | Jan 2010 | A1 |
20100037035 | Archer et al. | Feb 2010 | A1 |
20100058313 | Hansmann et al. | Mar 2010 | A1 |
20100241774 | Olszewski et al. | Sep 2010 | A1 |
20100274872 | Harrang et al. | Oct 2010 | A1 |
20100287320 | Querol et al. | Nov 2010 | A1 |
20110113083 | Shahar | May 2011 | A1 |
20110238949 | Archer et al. | Sep 2011 | A1 |
20110258627 | Faraj et al. | Oct 2011 | A1 |
20120030370 | Faraj et al. | Feb 2012 | A1 |
20120174105 | Archer et al. | Jul 2012 | A1 |
20120185230 | Archer et al. | Jul 2012 | A1 |
20120185867 | Archer et al. | Jul 2012 | A1 |
20120185873 | Archer et al. | Jul 2012 | A1 |
20120210094 | Blocksome et al. | Aug 2012 | A1 |
20120246256 | Blocksome et al. | Sep 2012 | A1 |
20130024866 | Archer et al. | Jan 2013 | A1 |
20130046844 | Faraj et al. | Feb 2013 | A1 |
20130060557 | Archer et al. | Mar 2013 | A1 |
20130060833 | Archer et al. | Mar 2013 | A1 |
20130061238 | Archer et al. | Mar 2013 | A1 |
20130067479 | Archer et al. | Mar 2013 | A1 |
20130067483 | Archer et al. | Mar 2013 | A1 |
20130067487 | Faraj et al. | Mar 2013 | A1 |
20130111482 | Archer et al. | May 2013 | A1 |
20130124665 | Blocksome et al. | May 2013 | A1 |
20130160025 | Faraj et al. | Jun 2013 | A1 |
20130179620 | Faraj et al. | Jul 2013 | A1 |
Entry |
---|
Vadhiyar et al. Performance Modeling for Self Adapting Collective Communications for MPI. LACSI Symposium. 2001. |
Faraj, et al.; “STAR-MPI: Self Tuned Adaptive Routines for MPI Collective Operations”, Proceedings of the 20th Annual International Conference on Supercomputing (ICS'06), Jun. 2006, pp. 199-208, ACM New York, USA, DOI: 10.1145/1183401.1183431. |
Blaise Barney, “Message Passing Interface (MPA)”, Jul. 21, 2011, Lawrence Livermore National Laboratory, <http://web.archive.org/web/20110721045616/https://computing.IInl.gov/tutorials/m pl>. |
“DeinoMPI—MPI—Comm—split”, May 11, 2011, Deino Software, <http://web.archive.org/web/20110501135905?http://mpi.deino.net/mpi—functions/MPI—Comm—split.html>. |
Office Action, U.S. Appl. No. 13/185,856, May 23, 2013, pp. 1-14. |
Final Office Action, U.S. Appl. No. 12/748,579, May 10, 2013, pp. 1-7. |
Notice of Allowance, U.S. Appl. No. 12/985,075, Jun. 12, 2013, pp. 1-14. |
Office Action, U.S. Appl. No. 13/231,326, Jun. 6, 2013, pp. 1-57. |
Office Action, U.S. Appl. No. 13/690,474, Jun. 25, 2013. |
“MPI-2: Extensions to the Message-Passing Interface,” Message Passing Interface Forum, Nov. 15, 2003, http//mpi-forum.cs.uiuc.edu/docs/mpi2-report.pdf, Accessed Nov. 7, 2013, 370 Pages. |
“MPI Performance Topics”, http://computing.IInl.gov/tutorials/mpi—performance/, Accessed Jul. 8, 2011, 20 Pages. |
Saphir, W., “Message Buffering and its Effect on the Communication Performance of Parallel Computers”, Apr. 1994, http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.128.5359&,rep=rep1&type=pdf, pp. 1-20. |
“Derived Datatypes with MPI”, http://static.msi.umn.edu/tutorial/scicomp/general/MPI/content6.html, Accessed Jul. 11, 2011, 10 Pages. |
Willis, J., et al., “MinSim: Optimized, Compiled VHDL Simulation Using Networked & Parallel Computers”, Proceedings of Fall 1993 VHDL International User's Forum, Fall 1993, http://www.eda.org/VIUF—proc/Fall93/abstract—fall93.html#WILLIS93A, Accessed Nov. 7, 2013, pp. 137-144. |
Almasi, G., et al. “Optimization of MPICollective Communication on BlueGene/L Systems”, ICS'05, Jun. 20-22, 2005, pp. 253-262, ACM, Boston, MA, USA. |
Chan, E., et al. “Collective Communication on Architectures that Support Simultaneous Communication over Multiple links”, PPoPP'06, Mar. 29-31, 2006, pp. 2-11, ACM, New York, New York, USA. |
Huang, S., et al., “DZB: MPI One-sided Exploitation of LAPI APIs Component Design”, Communication Protocols & Application Tools Development, Mar. 16, 2006, pp. 1-70, IBM Corporation Poughkeepsie, NY, USA. |
Weizhen, M. et al., “One-To-All Personalized Communication in Torus Networks”, PDCn'07 Proceedings of the 25th IASTED International Multi-Conference: parallel and distributed computing and networks, Innsbruck, Austria,Year: 2007 (Month Unknown), pp. 291-296, ACTA Press Anaheim, CA, USA. |
Sottile, M., et al., “Performance analysis of parallel programs via message-passing graph traversal”, Feb. 25, 2006, Proc. 20th IEEE Int'l Parallel and Distributed Processing Symp. (IPDPS), Conference Date: Apr. 25-29, 2006, pp. 1-29, Los Alamos Nat. Lab., NM, USA. URL: https://smartech.gatech.edu/bitstream/handle/1853/14424/GT-CSE-06-10.pdf. |
Stankovic, N., et al., “Visual Programming for Message-Passing Systems”, International Journal of Software Engineering and Knowledge Engineering, (1999), (Month Unknown), 25 Pages, vol. 9, URL: http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.18.4673. |
“DeinoMPI—MPI—Comm—split, May 11, 2011, Deino Software,” http://web.archive.org/web/20110501135905/http://mpi.deino.net/mpi—functions/MPI—Comm—split.html, Accessed May 30, 2013, 4 Pages. |
Barney, B., “Message Passing Interface (MPI)”, Jul. 21, 2011, Lawrence Livermore National Laboratory, http://web.archive,org/web/20110721045616/https://computing.IInl.gov/tutorials/mpi/ Accessed Laboratory, Nov. 7, 2013, 31 Pages. |
Faraj, A., et al., “STAR-MPI: Self Tuned Adaptive Routines for MPI Collective Operations”, Proceedings of the 20th Annual International Conference on Supercomputing (ICS'06), Jun. 2006, pp. 199-208, ACM, New York, New York, USA, DOI: 10.1145/1183401.1183431. |
Ribler, R., et al., “The Autopilot performance-directed adaptive control system,” Future Generations Computer Systems, Sep. 1, 2001, pp. 175-187, vol. 18, No. 1, Elsevier Science Publications, Amsterdam, NL. |
Zhang, Y., et al., “Automatic Performance Tuning for J2EE Application Server Systems,” Lecture Notes in Computer Science, Year: 2005, (Month Unknown), pp. 520-527, vol. 3806, Springer Berlin Heidelberg. |
Chung, I-Hsin, et al., “Automated Cluster-Based Web Service Performance Tuning,” Proceedings of the 13th IEEE International Symposium on High Performance Distributed Computing, 2004, Honolulu, HI, USA, Jun. 4-6, 2004, pp. 36-44, Piscataway, NJ, USA. |
Hondroudakis, A., et al., “An Empirically Derived Framework for Classifying Parallel Program Performance Tuning Problems,” Proceedings of the Sigmetrics Symposium on Parallel and Distributed Tools, SPOT 1998, Welches, OR, Aug. 3-4, 1998. Sigmetrics Symposium on Parallel and Distributed Tools, Aug. 3, 1998, pp. 112-123, vol. SYMP 2, New York, NY, US, ACM. |
Gara, A., et al., “Overview of the Blue Gene/L System Architecture,” IBM Journal of Research & Development, Mar./May 2005, pp. 195-211, vol. 49, No. 2/3, IBM, New York, USA. |
Adiga, N.R., et al., “Blue Gene/L Torus Interconnection Network.” IBM Journal of Research & Development, Mar./May 2005, pp. 265-276, vol. 49, No. 2/3, IBM, New York, USA. |
Barnett, M. et al., “Broadcasting on Meshes With Worm-Hole Routing,” Second Revised Version, Dec. 1995, pp. 1-22, University of Texas, Department of Computer Sciences. |
Faraj, A., et al. “MPI Collective Communications on the Blue Gene/P Supercomputer: Algorithms and Optimizations”, 17th IEEE Symposium on High Performance Interconnects,New York, NY, Aug. 25-27, 2009, pp. 63-72, IEEE. |
Faraj, A., et al. “A Study of Process Arrival Patterns for MPI Collective Operations”, International Journal of Parallel Programming, Jan. 10, 2008, pp. 1-28, Springer (Online). |
Faraj, A., et al. “Automatic Generation and Tuning of MPI Collective Communication Routines”, ICS'05, Jun. 20-22, 2005, pp. 393-402, Boston, MA, USA. ACM. |
Moreira, et al.; The Blue Gene/L Supercomputer: A Hardware and Software Story, International Journal of Parallel Programming, Jun. 2007, pp. 181-206; vol. 35, No. 3, Springer Science+Business Media LLC, USA. |
Tanenbaum, “Structured Computer Organization (2nd ed.)”, Jan. 1984, pp. 10-12, Prentice Hall PTR, Upper Saddle River, NJ, USA. |
Notice of Allowance, U.S. Appl. No. 12/189,336, Mar. 27, 2013. |
Office Action, U.S. Appl. No. 13/006,696, Mar. 4, 2013. |
Final Office Action, U.S. Appl. No. 13/007,905, Apr. 17, 2013. |
Final Office Action, U.S. Appl. No. 12/985,075, Apr. 18, 2013. |
Final Office Action, U.S. Appl. No. 13/667,456, Apr. 19, 2013. |
Number | Date | Country | |
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20130160025 A1 | Jun 2013 | US |
Number | Date | Country | |
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Parent | 12760111 | Apr 2010 | US |
Child | 13767997 | US | |
Parent | 13663545 | Oct 2012 | US |
Child | 12760111 | US |