The disclosure relates to an underwater polarimetric reflectance imaging system for imaging sea lice contaminated fish, the use of such a system, a fish imaging method for obtaining an image with a high contrast between fish and sea lice, and a method for detecting sea lice on fish.
Aquaculture is a growing international industry. Farming of species in the Salmonidae fish family is, due to high commercial demand, an important growing industry for countries at the Atlantic and Pacific coasts. The cost efficiency of the farming needs, however, to increase in order to feed more people with high quality and sustainable farmed fish.
Due to high fish concentrations, fishes in pens have a high risk of getting contaminated by diseases or parasites. Regulations have therefore been applied to the industry in order to limit the total biomass density and the level of contaminated fish. The authorities require inter alia classification of sea lice found on contaminated fish within the categories; adult female, mobile and stationary lice.
In order to monitor fish in fish farms, the fish farmers have to disturb the fish on a regular basis by taking a limited number of fish (typical 10-20) out of the pen to measure their weight, level of parasites and whether they have visible signs of diseases. This is a manual task performed by the tender, and disturbs the fish in its daily life by exposing the fish to both chemicals, as well as air. It is believed that these individuals have a higher mortality than their peers subsequent the examinations. The validity of the statistics can also be questioned when sampling a population of 100 000 to 200 000 by 10-20 individuals only. Sea lice host population follows as an example a negative binomial distribution, i.e. the concentration of lice is very high on a few individuals and low on others.
Autonomous sensor systems have the potential of efficiently measuring the level of parasite contamination and indication of diseases on the fish inside the pen without disturbing the fish. As these systems have the potential to measure thousands of fishes every day, they can achieve superior statistics and overall precision compared to existing methods. Implementation of autonomous systems will additionally ease the work of the fish tenders, allowing them to focus on the feeding and increasing the fish welfare for a more sustainable industry.
There are today no commercially available and proven systems for sea lice detection. The main object of the present invention is therefor to provide a system and method for efficient imaging of specimens (such as sea louse) on the surface of the fish.
In a first aspect of the present invention, the invention provides an underwater polarimetric reflectance imaging system for imaging sea lice contaminated fish, the system comprising a light emitting device, configured to emit an L number of narrow bands of light, where each narrow band of light has a FWHM<70 nm and an average wavelength in the range 350 nm-750 nm, and where a nonzero P number of the L number of narrow bands of light is/are polarised, a 2D array detector comprising a plurality of pixel sensors, where the 2D array detector is arranged in order to detect light originating from the light emitting device, and a first polarisation filter, positioned in front of the 2D array detector.
According to an embodiment of the invention L>1 and P≥1.
At least one of the nonzero P number of polarised narrow bands of light has according to another embodiment of the invention an average wavelength within 30 nm of 405 nm or 730 nm.
According to yet another embodiment of the invention the light emitting device, the 2D array detector and the first polarisation filter are arranged in the same plane, where at least one of the nonzero P number of polarised narrow bands of light emitted by the light emitting device is linearly polarised with a polarisation direction lying in the plane, and where the first polarisation filter is a linear polariser arranged such that it blocks light with a polarisation direction essentially in the plane, or a polarisation direction essentially perpendicular to the plane.
The light emitting device comprises according to yet another embodiment of the invention a light emitting diode (LED) and a second polarisation filter arranged in front of the LED, and/or a laser.
According to yet another embodiment of the invention light emitting device, the 2D array detector and the first polarisation filter are arranged in the same watertight housing. The light emitting device is alternatively arranged in a first watertight housing, while the 2D array detector and the first polarisation filter are arranged in a second watertight housing separate from the first watertight housing.
The light emitting device is according to yet another embodiment of the invention configured to emit a narrow band of light with a FWHM<30 nm.
The underwater polarimetric reflectance imaging system comprises according to yet another embodiment of the invention a colour filter array arranged in front of the 2D array detector so that each pixel of the colour filter array covers a pixel sensor of the 2D array detector.
The underwater polarimetric reflectance imaging system comprises according to yet another embodiment of the invention a second light emitting device, configured to emit an L number of narrow bands of light, where each narrow band of light has a FWHM<70 nm and an average wavelength in the range 350 nm-750 nm, and where a nonzero P number of the L number of narrow bands of light is/are polarised.
The underwater polarimetric reflectance imaging system comprises according to yet another embodiment of the invention a computer connected with the 2D array detector, where the computer is configured to generate an image, based on a signal detected by the 2D array detector.
A second aspect of the invention concerns use of the underwater polarimetric reflectance imaging system for imaging sea lice contaminated fish.
In a third aspect of the present invention, the invention provides a fish imaging method for obtaining an image with a high contrast between fish and sea lice, the method comprising the steps of irradiating an L number of narrow bands of light onto a fish, where each narrow band of light has a FWHM<70 nm and an average wavelength in the range 350 nm-750 nm, and where a nonzero P number of the L number of narrow bands of light is/are polarised, performing polarisation filtering of a reflection of each of the L number of narrow bands of light irradiated onto the fish, detecting the polarisation filtered reflection of each of the L number of narrow bands of light irradiated onto the fish, and generating an image of the fish from the detected filtered reflection(s) of the nonzero P number of polarised narrow bands of light irradiated onto the fish.
In one embodiment of the invention L=P=1.
The image is according to another embodiment of the invention generated from the detected filtered reflection(s) of the nonzero P number of polarised narrow bands of light irradiated onto the fish, and from the detected filtered reflection(s) of the L−P number of non-polarised narrow bands of light irradiated onto the fish.
In a fourth aspect of the present invention, the invention provides a method for detecting sea lice on fish, the method comprising the steps of obtaining one or more images of a fish by employing the method according to the third aspect of the invention, identifying a sea lice in the image by evaluating the variation in the intensity in at least one image, or by evaluating the variation in the relative intensity between at least two images.
Other advantageous features will be apparent from the accompanying claims.
In order to make the invention more readily understandable, the discussion that follows will refer to the accompanying drawings, in which:
In the following, general embodiments as well as particular exemplary embodiments of the invention will be described. References will be made to the accompanying drawings. It shall be noted, however, that the drawings are exemplary embodiments only, and that other features and embodiments may well be within the scope of the invention as claimed.
The present invention is based on a discovery that one or more narrow bands of polarised light can be successfully employed in order to obtain images of sea lice contaminated fish with an enhanced contrast between the sea lice and the fish. The enhanced contrast has been found to originate from a difference in the birefringent properties of the exoskeleton of the sea lice compared to those of the skin of a fish, a difference that causes polarised light to disproportionally alter its polarisation when reflected of a louse compared to when reflected of the skin of a fish. Enhanced contrast between sea lice and fish has also been found to be obtainable via isotropic absorption.
The present invention relates to an underwater polarimetric reflectance imaging system, the use of such a system, a method for imaging sea lice contaminated fish, and a method for identifying lice in images obtained with the aforementioned method.
The light emitting device 110 is according to the invention configured to emit a nonzero integer L number of narrow bands of light. These narrow bands may be emitted by the same light emitting device 110 or alternatively by different light emitting devices 110. The L number of narrow bands of light comprise(s) according to the invention a P number of polarised narrow bands of light, where P is a nonzero integer smaller or equal to L.
The use of polarised narrow band light is motivated by the discovery that such light can be successfully employed in order to obtain images of sea lice contaminated fish with an enhanced contrast between the sea lice and the fish. The enhanced contrast is as mentioned caused by a disproportional alteration of the polarisation of narrow band light reflected of a louse compared to when reflected of the skin of a fish. Narrow band light is preferable to wide band light, as the polarisation of light with different wavelengths have been found to be altered in a different manner upon reflection of a sea louse.
Any light emitting device 110 may as illustrated in
The light emitting device is as illustrated in
The polarimetric reflectance imaging system is according to the invention configured to image sea lice contaminated fish that are swimming in water. The light emitting device is consequently configured to emit a narrow band of light with an average wavelength between 350 nm and 750 nm as light outside this wavelength interval has been found to be prone to absorption by the water. It has been discovered as a part of the present invention that light with different wavelengths, and optionally different polarisations, can be used to enhance different types of contrast in an image of a sea lice contaminated fish. A wavelength of approximately 405 nm is e.g. beneficial for generating a strong contrast between a fish and a louse, while light with a wavelength longer than 700 nm has been found to generate a strong contrast between lice at different development stages. The underwater polarimetric reflectance imaging system may therefore be configured to emit a narrow band of light with an average wavelength within 30 nm of 405 nm, or 730 nm. The underwater polarimetric reflectance imaging system may optionally be configured to emit both a polarised narrow band of light with an average wavelength within 30 nm of 405 nm and a polarised narrow band of light with an average wavelength within 30 nm of 730 nm.
Polarised light is according to the invention defined as light that is linearly polarised, right hand polarised, left hand polarised, circularly polarised or elliptically polarised, etc. Polarised light differs from non-polarised light in that is has non-zero degree of polarisation (DOP), which is a quantity used to describe the portion of an electromagnetic wave which is polarised. The definition “polarised light” may according to the invention be considered as light with a DOP larger than 20%. Polarised light may in the context of the present invention alternatively be considered as light with a DOP larger than 40% or alternatively 60%.
The underwater polarimetric reflectance imaging system 100 comprises as illustrated in
The 2D array detector 120 may be a part of a camera comprising zero or more of elements like an objective lens, diaphragm, shutter mechanism, etc. The 2D array detector 120 is according to the invention arranged in order to detect light originating from the light emitting device 110. The 2D array detector 120 may, as illustrated in
The underwater polarimetric reflectance imaging system 100 comprises as illustrated in
The first polarisation filter is according to the invention an optical filter configured to allow light with a certain polarisation to pass while blocking light with other polarisations. The first polariser may comprise a linear polariser, circular polariser, or other types of polariser, and may e.g. be an absorptive polariser or a beam splitting polariser. As no polarisation filter is 100% ideal, a polarisation filter may in the context of the invention be considered as a polarisation filter that allows light waves with an approximate polarisation to pass while blocking light waves with other polarisations. A polariser may typically considered as having a design wavelength region where its polarisation properties are near optimal, e.g. 99.99%. When used on the edge of this region, or in other regions the performance may e.g. drop down to 70-90%.
The light emitting device 110 is according to the invention configured to emit a P number of polarised narrow bands of light where the number P is lower or equal to L. The polarisation of the P number of narrow bands of light may originate from intrinsic properties of the light emitting device 110, or may alternatively be obtained through employment of one or more polarisation filters.
Another aspect of the invention relates to a fish imaging method for obtaining an image with a high contrast between fish and sea lice. The method comprises, as illustrated in
A nonzero P number of the L number of narrow bands of light irradiated onto the fish is/are according to the invention polarised. L and P may in principle be any nonzero integer, as long as P is smaller or equal to L. L is according to one embodiment of the invention equal to P equal to 1. L and P may for example be simultaneously be equal to 2 or 3, or L may alternatively be equal to 2 or 3, while P equals to L−1.
Any combination of narrow bands of light, both polarised and non-polarised, may in general be used in order to obtain an image of a sea lice contaminated fish. Multiple narrow bands of light, both polarised and non-polarised, may in general be used to generate the same or separate images. Polarised light may as stated previously be used in order to obtain a high contrast between fish and sea louse, while non-polarised light e.g. may be used to generate contrast within the fish, or be used as an intensity normalizer etc. An image may according to one embodiment of the invention be generated from both the detected filtered reflection(s) of a nonzero P number of polarised narrow bands of light irradiated onto a fish, and from detected filtered reflection(s) of an L−P number of non-polarised narrow bands of light irradiated onto the fish.
When one or more images of a sea lice contaminated fish has been obtained through the above method, these may further be analysed in order to identify a number of sea lice on the fish, optionally also the stage of each lice. A flow diagram illustrating a method for detection of sea lice on fish is shown in
Number | Date | Country | Kind |
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20190310 | Mar 2019 | NO | national |
Filing Document | Filing Date | Country | Kind |
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PCT/NO2020/050041 | 2/18/2020 | WO | 00 |