The present disclosure generally relates to a system and method for processing seeds, and more specifically, a seed imaging system and method for imaging and storing seeds.
In the agricultural industry, and more specifically in the seed breeding industry, it is important for scientists to be able to analyze seeds with high throughput. By this it is meant that the analysis of the seeds preferably occurs not only quickly, but also reliably and with high total volume. Historically, seeds are categorized by size using mechanical equipment containing screens with holes corresponding to predetermined sizes. Seed categorization is also conducted using image analysis of the seeds to detect certain appearance characteristics of the seeds. However, prior seed image analysis systems are limited in their ability to detect the size, shape, and appearance of the seeds. As a result, prior image analysis systems have limited capabilities for characterizing seed shape and defects. Additionally, prior image analysis systems do not enable automated collection of statistically significant data quantities for the development of robust data models for determining correlations between seed batches using seed quality metrics.
In one aspect, a seed imaging system for imaging seeds generally comprises a seed transfer station configured to move seeds through the system. An imaging assembly comprises a first camera mounted relative to the seed transfer station and configured to acquire images of the seeds as the seeds move through the system. A second camera is mounted relative to the seed transfer station and is configured to acquire images of the seeds as the seeds move through the system. The second camera has an imaging modality different from an imaging modality of the first camera.
In another aspect, a method of imaging seeds generally comprises moving seeds through the system using a seed transfer station; acquiring, using a first camera mounted relative to the seed transfer station, images of the seeds as the seeds move through the system via the seed transfer station; and acquiring, using a second camera mounted relative to the seed transfer station, images of the seeds as the seeds move through the system via the seed transfer station, an imaging modality of the second camera being different from an imaging modality of the first camera.
In yet another aspect, a seed imaging system for imaging seeds generally comprises a seed transfer station configured to move seeds through the system. An imaging assembly comprises a first camera mounted above to the seed transfer station and configured to acquire images of the seeds as the seeds move through the system. A second camera is mounted below to the seed transfer station and configured to acquire images of the seeds as the seeds move through the system.
Corresponding reference characters indicate corresponding parts throughout the drawings.
Referring to
The imaging and analysis assembly 14 combines multiple imaging modalities to measure the color, size, shape, texture, and internal characteristics of the seeds, for example, which provides a more accurate indication of their appearance and condition. The storage assembly 16 is configured to store the seeds in microplates for later processing, assessment, and/or analysis. In one or more other examples, the storage assembly may be configured to individually sort seeds in two or more bulk fractions, such as at the end of the load and transfer assembly 12. For example, pulses of air may direct the seeds, depending on the analyses performed on the seeds, into one or more bulk containers. Additionally, the system 10 is designed for acquisition of high-content data. Image data (e.g., color, internal characteristics, shape, etc.) will be mined from the high-content data to extract the best predictors of quality. A high-throughput belt system may subsequently be incorporated to collect those features using faster imaging devices.
Referring to
In the illustrated embodiment, the conveyor 26 comprises a belt 28 defining a flat horizontal conveyor transport surface. The conveyor 26 provides a flat surface for the seeds to rest as they are delivered through the system 10. As a result, the system 10 is able to better control the travel of each seed through the system and therefore better track the position of the seeds as they move on the conveyor 26 because the seeds will remain in a substantially fixed orientation and position on the conveyor. In one embodiment, a high precision encoder (not shown) is incorporated into the system 10 to track the position of the seeds on the conveyor 26. The encoder may work in combination with, or include, the tracking sensor 33. The encoder may also act as a master timing device to trigger the different imaging modalities to acquire their images. As will be explained in greater detail below, the flat surface allows for more accurate measurements to be acquired by the imaging and analysis assembly 14. Moreover, in one example, being able to accurately track the position and location of the seeds as they travel on the conveyor 26 allows the system 10 to locate each seed for placement in a microplate of the storage assembly 16 for later assessment. The seeds may be loaded on the conveyor from multiple supply channels, whereby the seeds are singulated in parallel along the length of the belt, for example. In another example, the seeds may be loaded into onto trays (e.g., each cell received in a cell of a “scan tray,” and the tray with loaded seeds may be transported along the conveyor. Thus, each seed within a corresponding cell or position on the tray is imaged and analyzed so that the acquired data is associated with the location of the seed on the tray (i.e., the seeds are tracked by their corresponding cell or position on the tray).
The conveyor 26 may be a low-speed conveyor operating at speeds of about 5-10 seeds/minute. In one or more other embodiments, the conveyor may operate at speeds of about 30-100 seeds/minute or other rates. The speed of the belt 28 may be controlled by the controller 18. In one embodiment, the conveyor 26 is transparent. The transparent nature of the conveyor 26 allows for imaging from underneath the conveyor to be performed, as will be explained in greater detail below. However, the conveyor can be translucent or semi-transparent without departing from the scope of the disclosure. In one embodiment, the belt 28 is formed from Mylar. Other materials including optically and X-ray transmissive materials are envisioned without departing from the scope of the disclosure. A coating may also be applied to the belt 28 of the conveyor 26. The coating may be configured to repel dust and/or have scratch resistant properties which can help keep the belt 28 clean and free of marks which can impair the ability of the imaging and analysis assembly 14 to acquire clear images. Additionally or alternatively, a plurality of ionizers (not shown) may be provided to dissipate static charges on the system 10 to reduce adherence of fine particulate matter on the conveyor 26. In one or more other embodiments, the seeds may be loaded on “scantrays,” which are placed on the conveyor, to image and track individual seeds by multiple modalities. The collected data may be be used for data fusion and multimodal classifier training.
Referring to
A first 2D line scan red-green-blue (RGB) camera (broadly, a first 2D camera) 34 is mounted above the conveyor surface for acquiring image data of the seeds to measure the color, size, shape, and appearance of the seeds in two dimensions, and a second 2D line scan RBG camera (broadly, a second 2D camera) 36 is mounted below the conveyor surface for acquiring image data of the seeds to measure the color, size, shape, and appearance of the seeds in two dimensions. In one embodiment, the top 2D camera 34 is mounted above the conveyor 26 in a substantially vertical orientation such that a focal axis of the camera extends perpendicular to a horizontal plane of the conveyor, and the bottom 2D camera 36 is mounted below the conveyor in a substantially vertically orientation such that a focal axis of the camera extends perpendicular to a horizontal plane of the conveyor. Length and width dimensions of the seeds can be calculated using an image processing routine executed by the controller 18. With the length and width dimensions of the seeds, the areas of each seed can be calculated. Each 2D camera 34, 36 is configured to image a 150 mm lane on the belt 28 of the conveyor 26 with a spatial resolution of about 0.14 mm. One example of a suitable 2D camera is the CV-L107CL model by JAI.
Additionally, each 2D camera 34, 36 has an associated light assembly 37 for illuminating the fields of view of the cameras 34, 36 to assist in producing clear and bright images. Each light assembly 37 comprises a pair of top white lights 37A and a back blue light 37B. The light assemblies 37 provide lighting that compliments the clear conveyor belt 28 so that the images from the cameras 34, 36 are clear and bright. The field of view for the top 2D camera 34 is illuminated by the white lights 37A mounted above the conveyor surface and the blue light 37B mounted below the conveyor surface. Conversely, the field view for the bottom 2D camera 36 is illuminated by white lights 37A mounted below the conveyor surface and the blue light 37B mounted above the conveyor surface. Using only the top and bottom 2D cameras, the imaging assembly 14 is able to image over 90% of the surface of each seed. In a similar embodiment, additional top and/or bottom cameras may be added in orientations off-perpendicular to the conveyor 26. These cameras may be used in conjunction with the top 2D camera 34 and/or the bottom 2D camera 36 for detailed defect inspection over a larger portion of the seed surface area.
Although the illustrated embodiment shows the hyperspectral cameras 30, 32 mounted upstream of the 2D cameras 34, 36, it is envisioned that at least one of the 2D cameras could be mounted upstream of the hyperspectral cameras so that the 2D camera is the first imaging device passed by the seeds (see
The imaging and analysis assembly 14 further comprises an X-ray camera 38 mounted above the conveyor surface and an X-ray source below the belt for producing radiation detected by the X-ray camera to acquire X-ray images of the seeds. The X-ray camera 38 is housed within an X-ray enclosure 39 which also allows passage of the conveyor belt 28 through the enclosure. In particular, the enclosure 39 includes a passage (
A 3D line laser profiler (broadly, a 3D camera) 40 is also mounted above the conveyor surface for acquiring 3D image data of the seeds to measure the size and shape of the seeds in three dimensions. In one embodiment, the 3D camera 40 is mounted above the conveyor in a substantially vertical orientation such that a laser of the camera projects substantially perpendicular to a horizontal plane of the conveyor 26, and a focal axis of the camera extends at an angle slightly skewed from vertical such that a focal axis of the 3D camera extends at a non-orthogonal angle to the plane of the conveyor. The 3D camera 40 projects a line laser to create a line profile of the seed's surface. The 3D camera 40 measures the line profile to determine displacement which is represented by an image of the seed showing varying pixel intensities corresponding to height differences. A thickness dimension is obtained through the pixel intensity of the 3D image produced by the 3D camera 40. For example, a maximum pixel intensity can be interpreted as a marker of seed thickness. Thus, as the seeds pass through the focal window of the 3D camera 40, a thickness of each seed is recorded as the maximum pixel intensity detected by the 3D camera for each seed. To acquire an accurate thickness measurement, it may be necessary to calibrate the distance measurement of the 3D camera 40 based on objects of known height. Using the length and width dimensions acquired from the 2D cameras 34, 36 and the thickness dimensions acquired from the 3D camera 40, the system 10 can obtain volume estimates for each seed. In another embodiment, more sophisticated image processing may be used to estimate volume from a detailed contour map of the top half of each seed. Moreover, a second, bottom 3D camera (not shown) could generate a detailed contour map of the bottom half of the seed. The contour maps from the top and bottom 3D cameras can be combined to provide a more complete estimate of the overall seed volume. In either case, for a known (such as measured by seed weighing mechanism 15) or estimated weight of the seed, the volume data can be used to estimate seed density. One example of a suitable 3D camera is the DS1101R model by Cognex.
Additional imaging devices can also be mounted in the system 10 for acquiring additional image data. For example, additional hyperspectral cameras including optical fluorescence, optical polarization imaging, a 1D NMR spectroscopy device, and/or a microwave measurement system can be mounted in the system 10 to provide additional data for the seeds. In one example, as shown in
Generally, combining data from two or more imaging modalities may provide improved prediction compared with a single method. For example, as shown in
The preservation of seed orientation in each top or bottom imaging modality as it travels along the belt 28 permits alignment of images from different techniques using registration methods in post-acquisition software processing. The combination of all imaging techniques applied to spatially-localized regions, possibly as small as a single pixel, may yield fingerprints of defects and physiological structures that would be difficult to classify using a single method. For example, the combination of spectral signatures from the hyperspectral cameras 30, 32 with local height data from the 3D camera 40 and attenuation changes in the images from the X-ray camera 38 can indicate an abnormality on or near the surface of the seed which may be difficult to identify by current manual inspection methods or to classify using features derived from analysis of the entire seed area. A similar approach may be employed to identify small physiological structures in the seed, such as the embryo region.
Co-localizing defects with physiological seed structures may improve quality prediction since the effect of the defect may depend on location on the seed. For example, disease or damage in the embryo region of the seed may have a more pronounced impact on seed vitality compared with defects elsewhere on the seed. In this example, after using a combination of imaging techniques to accurately identify the embryo region, a similar procedure may be used to identify localized abnormalities, possibly with a different combination of techniques. Single-seed quality scoring data may then be used as a response variable to examine the effect of defect location relative to embryo or other critical seed structures. Additionally or alternatively, the scoring data may be used to define a characteristic localized combinatorial signature of an embryo or other region which predicts poor seed quality. These approaches would not be possible if the seeds were transported to different instruments for acquisition of imaging data since the seed orientation could not be reliably maintained for each technique.
Using real-time image processing-based thresholding methods, single seeds may be discriminated from the belt background and isolated in the field of view for each imaging modality. This ensures that only seed data is retained reducing the size of the image files. Also, because the vibratory feed 25 produces a set spacing between the seeds, and the belt speed can be set by the controller 18, the images produced from each imaging modality can be associated with a given seed. Additionally or alternatively seed detection from one imaging technique may be used to anticipate seed arrival at another technique and trigger the camera acquisition appropriately. Image files from each imaging modality may be saved independently or combined in a single image file with multiple layers of data consisting of the separate image data from all modalities. In either case, the identity of each seed is maintained across all modalities which avoids labeling error. Also, because the orientation of the seeds is the same for all imaging modes, correlations among the different modes can be made. For example, defects visibly apparent on the outside of the seed and imaged by the optical cameras may correlate with internal structures observed in the X-ray images. By maintaining seed identity in the single-seed identity storage mechanism 16 for post-imaging quality assays (e.g., RET (radicle emergence test), germination, and vigor testing), single-seed imaging data can be mined to extract relevant spatial and/or structural features from one or more imagining modalities that provide intrinsic seed quality data. Additionally, the source of seed damage can be determined by analyzing the seeds at different stages throughout seed processing (e.g., harvesting, transporting, processing, or sorting). To this effect, process-induced mechanical damage and the effects of formulation and the application rate of seed treatments can be determined.
The imaging and analysis assembly 14 is configured to determine circularity, solidity, and smoothness from the images produced. It will be understood by those skilled in the art that the system 10 may include image analysis software for processing the images to obtain the color, mean and variation in spectrum, size, shape, texture, and internal composition information for the seeds for any or all of the individual modalities or specific wavelengths in the hyperspectral data. For example, the software may incorporate machine learning analysis which facilitates the production of detailed image data. Typical modeling methods include Partial Least-Squares discriminate analysis (PLS-DA), neural networks, Support Vector Machines (SVM), logistic regression, and other methods. Because the imaging and analysis assembly 14 acquires images using multiple imaging modalities including hyperspectral imaging, 2D imaging, 3D imaging, and X-ray imaging, and because the images are obtained from the top and bottom of the seeds, the assembly can acquire a complete picture of the condition of the seeds in three dimensions. This complete picture includes data concerning the length, width, thickness (or roundness), solidity, smoothness dimensions, and internal composition of the seeds. The various imaging modalities produce image data which is analyzed by the controller 18. Data extracted from the imaging modalities includes average and variance of optical spectra from the image data produced by the hyperspectral cameras 30, 32, and attenuation characteristics in the image data obtained by the X-ray camera 38. These characteristics may include internal structural features and external cracks. Also, general size, shape, and color data from the 2D cameras 34, 36 and 3D camera 40 is extracted and analyzed by the controller 18.
Based on the measurement data from the cameras 30-40, the controller 18 can identify and categorize each seed according to its appearance. For example, a quality score may be assigned to each seed based on the data from the imaging and analysis assembly 14. The quality score can be used as the response variable for a prediction model used to classify other seeds processed in the system 10. Also, being able to acquire image data from multiple imaging modalities allows the system to tailor the image analysis process for a particular use. For example, image data from each imaging modality can be compared to each other to determine which imaging modality provides the most reliable indication of the condition of the seed. Also, correlations between the different imaging modalities can be formed. Thus, the characteristics of a seed determined by one imaging mode, embodied in the image data of the imaging mode, can be compared to the image data from another mode to find correlations in the two data sets. This may allow for one imaging mode to function as a verification of the image data acquired by another imaging mode. Also, one imaging mode could be used instead of another imaging mode if their image data was found to have a correlation. This could serve as a cost saving in the instance where image data from the 2D cameras 34, 36 was found to correlate with the image data from the significantly more costly X-ray camera 38. Thus, the 2D camera 34, 36 would be used instead of the more costly X-ray camera 38. Conversely, the imaging data from the separate imaging modalities could be combined to provide a more robust modeling tool. Combining the imaging data may enhance the overall prediction power of the system as compared to using each imaging modality separately.
Similarly, predetermined appearance categories may be stored in the controller 18. The appearance categories may be based on measurement thresholds or ranges for each of the color, spectral characteristics, length, width, circularity, solidity, smoothness, and internal composition data. Based on these thresholds/ranges, at least two categories can be defined. For example, the measurement data can be used to provide thresholds or ranges which indicate the seed as either healthy or defective. As each seed is analyzed the seed is associated with one of the categories. For example, a seed having one or more dimensions that are outside of a range of values, or above/below a threshold value, are categorized into a first, defective category; and seeds having one or more dimensions that are within a range of values, or above/below a threshold value, are categorized into a second, healthy category. Multiple range/threshold values may be established to further categorize the seeds into more than two categories.
To maintain accuracy and repeatability of all imaging modes, provisions for checking the proper functionality and calibration of the cameras can be added to the system 10. For instance, time-stable reference samples can be designed to include spectral, spatial, and X-ray transmission standards. These standards may include reflectance and fluorescence targets, spatial calibration targets (e.g., line-pair or similar geometric patterns), height references, and X-ray targets (e.g., a variable thickness sample machines from synthetic material). The standards can be imaged at periodic intervals (e.g., start of each batch) and imaging processing methods will be used to check the status of the imaging hardware and perform any necessary re-calibrations.
Referring to
Referring to
In the illustrated embodiment, the storage assembly 16 includes microplate storage. However, other storage methods are envisioned. For example, a gel-based format storage method may be used when it is desirable to perform radicle-emergence testing. Additionally or alternatively, a wet towel storage method may be used for germination assays. Additionally or alternatively, a soil-based storage format may be used for greenhouse and/or field transplant testing.
In the illustrated embodiment, the conveyor 26 is mounted to a support wall 70. The imaging and analysis assembly 14 could also be mounted on the support wall. However, the components of the system 10 could be located in a different fashion without departing from the scope of the disclosure.
Referring to
The seeds first pass through the focal view of the first hyperspectral reflectance camera 30 which acquires image data across the visible light spectrum. An encoder reading may also be recorded as the seed is imaged by the first hyperspectral reflectance camera 30 to track the position of the seed on the conveyor 26. Next, the seeds pass through the focal view of the second hyperspectral reflectance camera 32 which acquires image data across the near-infrared spectrum. An encoder reading may also be recorded as the seed is imaged by the second hyperspectral reflectance camera 32 to track the position of the seed on the conveyor 26.
Next, the seeds pass through the focal view of the bottom 2D camera 36. The bottom 2D camera 36 acquires a 2-dimensional image of each seed which is processed by the controller 18 to produce length and width data for each seed. In one embodiment, the value associated with a maximum length and width measurements are recorded as the length and width values for the seed. An encoder reading may also be recorded as the seed is imaged by the bottom 2D camera 36 to track the position of the seed on the conveyor 26. Shortly thereafter, the seeds pass under the focal view of the top 2D camera. 34. The top 2D camera 34 acquires a 2-dimensional image of each seed which is processed by the controller 18 to produce length and width data for each seed. In one embodiment, the values associated with a maximum length and width measurement are recorded as the length and width values for the seed. An encoder reading may also be recorded as the seed is imaged by the top 2D camera 34 to track the position of the seed on the conveyor 26. As explained above, in a preferred embodiment, the seeds may pass through the focal view of a 2D camera 34 before passing though the focal view of the hyperspectral reflectance cameras 30, 32.
Next, the seeds pass through the passage 41 in the enclosure 39 and into the opening 43 under the view of the X-ray camera 38 which takes an X-ray of the seeds. The X-ray camera 38 acquires an image of the internal construction of each seed which is processed by the controller 18. An encoder reading may be recorded as the seed is imaged by the X-ray camera 38 to track the position of the seed on the conveyor 26. Finally, the seeds pass under the focal view of the 3D camera 40. The 3D camera 40 acquires a 3-dimensional image of each seed which is processed by the controller 18 to produce thickness data for each seed. An encoder reading may also be recorded as the seed is imaged by the 3D camera 40 to track the position of the seed on the conveyor 26. It is understood that the order of the instruments is not limited to the embodiments described herein.
Once a seed reaches the end of the conveyor 26, the seeds are captured by the collection mechanism 50 of the weighing assembly 15 which then delivers the seeds individually to the scale 52 for weighing. After the seeds are weighed, the transport mechanism 54 may transport the seeds to the storage assembly 16 where the seed collector 60 individually places the seeds into a microplate 64. Within the microplates 64 the seeds are allowed to grow. The data acquired for each seed is linked to the microplate 64 to which the seed is stored. Thus, the seed can be later analyzed referencing the image data acquired by the system 10 for making various determinations and correlations between seed quality and the associated seed image data. Alternatively, the seeds can be transferred to other trays, tubes, etc. for quality assessment while still maintaining each seed's identity. In one embodiment, the transport mechanism 54 deposits the seeds directly onto growth media.
The information obtained using the imaging and analysis assembly 14 can be useful in the subsequent processing, assessment, or analysis of the seeds. Generally, an attempt is made to correlate the color, mean, and variation in spectrum, size, shape, texture, and internal composition information for the seeds with quality attributes, including germination. These correlations suggest preferred imaging techniques on an application-specific basis. For example, in seed production plants, the data generated by the system 10 can be used to predict an overall distribution of defective seeds in a seed inventory, and to determine the distribution of defective seeds of a sub sample of seeds which can then be extrapolated to predict the overall seed inventory status. This distribution information may also be used to estimate seed quantities by commercial size categories and adjust sizing thresholds slightly in cases where seed quantities are limited.
In addition to the above description, other embodiments may include a bottom NIR hyperspectral camera, and an NIR backlight using polarized light. Further the X-ray enclosure may also consist of an inner and outer enclosure, where the inner enclosure is intended to block the majority of X-rays from the X-ray source and prevent X-ray interference or damage to the other imaging equipment, while the outer X-ray enclosure is intended to prevent any remaining X-rays from leaving the enclosure in conformance with the presence of a human operator.
Use of the seed imager shown in
A method of using embodiments of the invention for the purpose of making breeding determinations.
A method of using the data toward single seed correlation for imaging data to quality metrics, including correlating pixel to class of defect.
A method of using the output data for big data and potentially machine learning.
A method of using embodiments of the invention in combination with other seed categorization systems. e.g., genotyping, single seed identity coming into system, e.g. HD trays from seed chipper, and identity maintained during process.
Embodiments where each of the imaging systems are used in-part, as where they are not used in a single sequential machine, but are separated and the system provides for placement of the seeds in such a way that they do not move from their location for imagery purposes. Further, this would also include embodiments where the imagery systems are used in different sequential order. For example, particular applications use different groupings of imaging options. Seed identity/orientation are maintained.
Having described the invention in detail, it will be apparent that modifications and variations are possible without departing from the scope of the invention defined in the appended claims.
When introducing elements of the present invention or the preferred embodiment(s) thereof, the articles “a”, “an”, “the” and “said” are intended to mean that there are one or more of the elements. The terms “comprising”, “including” and “having” are intended to be inclusive and mean that there may be additional elements other than the listed elements.
In view of the above, it will be seen that the several objects of the invention are achieved and other advantageous results attained. As various changes could be made in the above constructions and methods without departing from the scope of the invention, it is intended that all matter contained in the above description and shown in the accompanying drawings shall be interpreted as illustrative and not in a limiting sense.
Number | Date | Country | |
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62642684 | Mar 2018 | US |