Patent Application
20240409496
The invention relates to new spermine derivatives of Formula I, to their pharmaceutical composition thereof and to their use as antidote of heparin in the control of blood coagulation.
Heparin (Hep) is a highly anionic glycosaminoglycan (GAG) extensively used in clinics as anticoagulant (Gandhi, N. S. & Mancera, R. L. Heparin/heparan sulphate-based drugs. Drug Discov. Today 15, 1058-1069 (2010) and Weitz, J. & Harenberg, J. New developments in anticoagulants: Past, present and future. Thromb. Haemost. 117 7, 1283-1288 (2017)). For a safer usage of Hep, the accessibility to a family of efficient reversal agents is desirable, especially for cases of overdose, life-threatening bleeding or urgent high-risk surgery. However, the number of antidotes for heparin-type drugs is quite limited: in practice it is reduced to the administration of protamine (Guo, X., Han, I. S., Yang, V. C. & Meyerhoff, M. E. Homogeneous Enzyme-Based Binding Assay for Studying Glycosaminoglycan Interactions with Macromolecules and Peptides. Anal. Biochem. 235, 153-160 (1996)), a small arginine-rich nuclear protein. Recent reports on other alternative macromolecules to reverse heparin drugs include a polymeric polycationic dendrimer (UHRA) (Kalathottukaren, M. T. et al. A Polymer Therapeutic Having Universal Heparin Reversal Activity: Molecular Design and Functional Mechanism. Biomacromolecules 18, 3343-3358 (2017)), a monoclonal antibody (idarucizumab) (Pollack, C. V et al. Idarucizumab for Dabigatran Reversal —Full Cohort Analysis. N. Engl. J. Med. 377, 431-441 (2017)), a modified version of the recombinant human Xa coagulation factor (andexanet alpha) (Connolly, S. J. et al. Full Study Report of Andexanet Alfa for Bleeding Associated with Factor Xa Inhibitors. N. Engl. J. Med. 380, 1326-1335 (2019)), as well as peptides (Li, T. et al. New synthetic peptide with efficacy for heparin reversal and low toxicity and immunogenicity in comparison to protamine sulfate. Biochem. Biophys. Res. Commun. 467, 497-502 (2015)) and peptidomimetics (Montalvo, G. L. et al. De Novo Design of Self-Assembling Foldamers That Inhibit Heparin-Protein Interactions. ACS Chem. Biol. 9, 967-975 (2014)) mimicking protamine.
Considering the general problems of using high molecular weight drugs (Schuster, J. et al. In Vivo Stability of Therapeutic Proteins. Pharm. Res. 37, 23 (2020), the search of alternative small molecules able to revert the anticoagulation effects of heparin is a hot topic in current research. Among these small-molecules, surfen (Schuksz, M. et al. Surfen, a small molecule antagonist of heparan sulfate. Proc. Natl. Acad. Sci. 105, 13075 LP-13080 (2008)) and ciraparantag (also named PER977) (Ansell, J. E. et al. Use of PER977 to Reverse the Anticoagulant Effect of Edoxaban. N. Engl. J. Med. 371, 2141-2142 (2014) and Ansell, J. E. et al. Ciraparantag safely and completely reverses the anticoagulant effects of low molecular weight heparin. Thromb. Res. 146, 113-118 (2016)) would be the most representative examples.
The bis(quinolyl) urea surfen is an approved drug originally used as an excipient for the production of depot insulin that has been recently identified as a heparan sulfate binder (Weiss, R. J. et al. Small molecule antagonists of cell-surface heparan sulfate and heparin-protein interactions. Chem. Sci. 6, 5984-5993 (2015)). However, the oncogenicity of surfen at the doses needed to observe effects on the coagulation rate has precluded further development in this specific field (Huner, D. T. & Hill, J. M. Surfen: A Quinoline with Oncogenic and Heparin-Neutralizing Properties. Nature 191, 1378-1379 (1961)).
On the contrary, the cationic synthetic ciraparantag molecule is currently in clinical trials as inhibitor of different anticoagulants (Kustos, S. A. & Fasinu, P. S. Direct-Acting Oral Anticoagulants and Their Reversal Agents—An Update. Medicines 6, (2019)). The actual mechanism of action of ciraparantag is still unclear probably due to the highly anionic charge density and polar nature of the heparin molecule, which makes extremely difficult its molecular recognition in highly solvating aqueous and ionic media. This chemical complexity is also accompanied by a large conformational flexibility in solution (Capila, I. & Linhardt, R. J. Heparin-Protein Interactions. Angew. Chem. Int. Ed. 41, 390-412 (2002)), making difficult to establish a preferred three-dimensional structure either by experimental (X-ray diffraction, NMR) or theoretical (molecular modeling) approaches (Khan, S., Gor, J., Mulloy, B. & Perkins, S. J. Semi-Rigid Solution Structures of Heparin by Constrained X-ray Scattering Modelling: New Insight into Heparin-Protein Complexes. J. Mol. Biol. 395, 504-521 (2010))
Recently, a heparin inhibitor has been identified using a dynamic combinatorial chemistry screening protocol (Corredor, M., Carbajo, D., Domingo, C., Pérez, Y., Bujons, J., Messeguer, M. & Alfonso, I. Dynamic Covalent Identification of an Efficient Heparin Ligand. Angew. Chem. Int. Ed. 57, 11973-11977 (2018), which is structurally related to spermine, opening the possibility to use spermine derivatives for this specific application. However, for a suitable in vivo application, more potent antidotes with submicromolar activity are desirable to minimize the need of high doses for clinical usage.
Considering all the above, it would be desirable to have improved heparin antidotes with good anticoagulant rates, based on simple, easy to produce synthetic small molecules, more potent for a suitable in vivo application with submicromolar activity in order to minimize the need of high doses.
A first aspect of the present invention relates to a compound of Formula I:
In one embodiment the invention relates to the compound of Formula I as defined above, wherein R1 is phenyl, 1-naphthyl, 2-naphthyl or fluorenyl and R2 is 1-naphthyl, 2-naphthyl or fluorenyl.
In another embodiment the invention relates to the compound of Formula I as defined above, wherein each R1 and R2 are independently substituted by one to three R3 groups, and preferably by one R3 groups.
In another embodiment the invention relates to the compound of Formula I as defined above, wherein each R1 and R2 are independently substituted by three R3 groups.
In another embodiment the invention relates to the compound of Formula I as defined above, wherein R1 is selected from
In another embodiment the invention relates to the compound of Formula I as defined above, wherein R2 is selected from
In another embodiment the invention relates to the compound of Formula I as defined above, wherein n is 2.
In another embodiment the invention relates to the compound of Formula I as defined above, wherein m is 1.
In another embodiment the invention relates to the compound of Formula I as defined above, wherein R4 is —CH3.
In another embodiment the invention relates to the compound of Formula I as defined above, wherein:
In another embodiment the invention relates to a compound of Formula I selected from:
In another preferred embodiment the invention relates to a compound of Formula I selected from 3AC, 3FF, 3AG and 3AF. In a more preferred embodiment the compound of Formula I is selected from 3AC and 3FF.
Another aspect of this invention relates to a pharmaceutical composition, which comprises a compound of Formula I as described above, preferably which comprises a compound of Formula I selected from 3AC, 3FF, 3AF and 3AG, more preferably from 3AC and 3FF, or a pharmaceutically acceptable salt thereof and one or more pharmaceutically acceptable excipients.
Another aspect of the present invention relates to a compound of Formula I, as defined above, or a pharmaceutically acceptable salt thereof for use as a medicament.
In another embodiment the invention relates to a compound of Formula I selected from 3AC, 3FF, 3AF and 3AG, preferably from 3AC and 3FF, or a pharmaceutically acceptable salt thereof for use as a medicament.
Another aspect of the present invention relates to a compound of Formula I, as defined above, or a pharmaceutically acceptable salt thereof for use as antidote of heparin in the control of blood coagulation.
Another aspect of the present invention relates to a compound of Formula I, as defined above, preferably to a compound of Formula I selected from 3AC, 3FF, 3AF and 3AG, more preferably to a compound of Formula I selected from 3AC and 3FF, or a pharmaceutically acceptable salt thereof for use as antidote of heparin in the control of blood coagulation.
Another aspect of the present invention relates to a compound of Formula I, as defined above, preferably to a compound of Formula I selected from 3AC, 3FF, 3AF and 3AG, preferably to a compound of Formula I selected from 3AC and 3FF, or a pharmaceutically acceptable salt thereof for the manufacture of a medicament for use as antidote of heparin in the control of blood coagulation.
Another aspect of the present invention relates to the use of a compound of Formula I, as defined above, preferably to a compound of Formula I selected from 3AC, 3FF, 3AF and 3AG, more preferably to a compound of Formula I selected from 3AC and 3FF, or a pharmaceutically acceptable salt thereof for the manufacture of a medicament.
Another aspect of the present invention relates to a method of treating or preventing blood coagulation in a subject in need thereof, especially a human being, which comprises administering to said subject an effective amount of a compound of Formula I, as defined above, preferably to a compound of Formula I selected from 3AC, 3FF, 3AF and 3AG, more preferably to a compound of Formula I selected from 3AC and 3FF, or a pharmaceutically acceptable salt thereof.
The compounds of the present invention contain one or more basic nitrogen and may, therefore, form salts with organic or inorganic acids. Examples of these salts include: salts with inorganic acids such as hydrochloric acid, hydrobromic acid, hydroiodic acid, nitric acid, perchloric acid, sulfuric acid or phosphoric acid; and salts with organic acids such as methanesulfonic acid, trifluoromethanesulfonic acid, ethanesulfonic acid, benzenesulfonic acid, p-toluenesulfonic acid, fumaric acid, oxalic acid, acetic acid, maleic acid, ascorbic acid, citric acid, lactic acid, tartaric acid, malonic acid, glycolic acid, succinic acid and propionic acid, among others. Some of the compounds of the present invention may contain one or more acidic protons and, therefore, they may also form salts with bases. Examples of these salts include salts with inorganic cations such as sodium, potassium, calcium, magnesium, lithium, aluminum, zinc, etc; and salts formed with pharmaceutically acceptable amines such as ammonia, alkylamines, hydroxylalkylamines, lysine, arginine, N-methylglucamine, procaine and the like.
There is no limitation on the type of salt that can be used, provided that these are pharmaceutically acceptable when used for therapeutic purposes. The term pharmaceutically acceptable salt refers to those salts which are, according to medical judgment, suitable for use in contact with the tissues of humans and other mammals without undue toxicity, irritation, allergic response and the like. Pharmaceutically acceptable salts are well known in the art.
The salts of a compound of Formula I, as defined above, particularly the salts of a compound of Formula I selected from 3AC, 3FF, 3AF and 3AG can be obtained during the final isolation and purification of the compounds of the invention or can be prepared by treating a compound 3AC, 3FF, 3AF and 3AG with a sufficient amount of the desired acid or base to give the salt in a conventional manner. The salts of the compounds 3AC, 3FF, 3AF and 3AG can be converted into other salts of the compounds of Formula I by ion exchange using ionic exchange resins.
The compounds 3AC, 3FF, 3AF and 3AG and their salts may differ in some physical properties but they are equivalent for the purposes of the present invention. All salts of the compounds 3AC, 3FF, 3AF and 3AG are included within the scope of the invention.
The compounds of the present invention may form complexes with solvents in which they are reacted or from which they are precipitated or crystallized. These complexes are known as solvates. As used herein, the term solvate refers to a complex of variable stoichiometry formed by a solute (a compound of Formula I, preferably selected from 3AC, 3FF, 3AF and 3AG or a salt thereof) and a solvent. Examples of solvents include pharmaceutically acceptable solvents such as water, ethanol and the like. A complex with water is known as a hydrate. Solvates of compounds of the invention (or salts thereof), including hydrates, are included within the scope of the invention.
The compounds of Formula I, preferably 3AC, 3FF, 3AF and 3AG may exist in different physical forms, i.e. amorphous and crystalline forms. Moreover, the compounds of the invention may have the ability to crystallize in more than one form, a characteristic which is known as polymorphism. Polymorphs can be distinguished by various physical properties well known in the art such as X-ray diffraction pattern, melting point or solubility. All physical forms of the compounds 3AC, 3FF, 3AF and 3AG, including all polymorphic forms (“polymorphs”) thereof, are included within the scope of the invention.
The present invention also relates to a pharmaceutical composition that comprises a compound of the present invention (or a pharmaceutically acceptable salt or solvate thereof) and one or more pharmaceutically acceptable excipients. The excipients must be “acceptable” in the sense of being compatible with the other ingredients of the composition and not deleterious to the recipients thereof.
The compounds of the present invention can be administered in the form of any pharmaceutical formulation, the nature of which, as it is well known, will depend upon the nature of the active compound and its route of administration. Any route of administration may be used, for example oral, parenteral, nasal, ocular, rectal and topical administration.
Injectable preparations, according to the present invention, for parenteral administration, comprise sterile solutions, suspensions or emulsions, in an aqueous or non-aqueous solvent such as propylene glycol, polyethylene glycol or vegetable oils. These compositions can also contain coadjuvants, such as wetting, emulsifying, dispersing agents and preservatives. They may be sterilized by any known method or prepared as sterile solid compositions, which will be dissolved in water or any other sterile injectable medium immediately before use. It is also possible to start from sterile materials and keep them under these conditions throughout all the manufacturing process.
In the above definitions, the term C1-4 alkyl, as a group or part of a group, means a straight or branched alkyl chain which contains from 1 to 4 carbon atoms and includes the groups methyl, ethyl, propyl, isopropyl, butyl, isobutyl, sec-butyl and tert-butyl.
Halogen means fluoro, chloro, bromo or iodo.
Unless otherwise defined, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skilled in the art to which this invention belongs. Methods and materials similar or equivalent to those described herein can be used in the practice of the present invention. Throughout the description and claims the word “comprise” and its variations are not intended to exclude other technical features, additives, components, or steps. Additional objects, advantages and features of the invention will become apparent to those skilled in the art upon examination of the description or may be learned by practice of the invention. The following examples, drawings are provided by way of illustration and are not intended to be limiting of the present invention.
General: Reagents and solvents were purchased from commercial suppliers (Aldrich, Fluka or Merck) and were used without further purification. Flash chromatographic purifications and preparative reversed-phase purifications were performed on a Biotage®Isolera Prime™ equipment. TLCs were performed using 6×3 cm SiO2 pre-coated aluminum plates (ALUGRAM@SIL G/UV254)
Nuclear Magnetic Resonance (NMR): Spectroscopic experiments for the characterization of compounds were carried out on a Varian Mercury 400 instrument (400 MHz for 1H and 101 MHz for 13C). Chemical shifts (δH) are quoted in parts per million (ppm) and referenced to the appropriate NMR solvent peak(s). 2D-NMR experiments COSY, HSQC and HMBC were used where necessary in assigning NMR spectra. Spin-spin coupling constants (J) are reported in Hertz (Hz). For the experiments performed in aqueous buffer a low molecular weight heparin was used: dp14 (from Iduron, prepared by high resolution gel filtration of partial heparin lyase digestion of high quality heparin, MW average—4100). One- and two-dimensional (1D and 2D) NMR experiments were performed at 298 K on a 500 MHz Bruker AVANCEIII-HD equipped with a z-gradient (65.7 G cm−1) inverse TCI-cryoprobe. Samples were dissolved in 5 mM Tris-d11 buffer with 50 mM NaCl (in D2O, pH 7.5, uncorrected pH meter reading). Bruker TopSspin 3.5pl6 standard pulse sequences were used for 1D and 2D experiments.
Liquid Chromatography coupled to Mass Spectrometry: Analyses were carried out at the IQAC Mass Spectrometry Facility, using a UPLC-ESI-TOF equipment: [Acquity UPLC©BEH C18 1.7 mm, 2.1×100 mm, LCT Premier Xe, Waters]. (CH3CN+20 mM HCOOH and H2O+20 mM HCOOH) mixtures at 0.3 mL/min were used as mobile phase.
Surface Plasmon Resonance (SPR): Affinity experiments between inhibitors and heparin were performed on an Open SPR™(Nicoya). All measurements were performed at 25° C. using a working buffer of 25 mM Tris at pH 7.5. Biotin-loaded sensor chips (NICOYA) were further functionalized with streptavidine (50 μg/mL) and later with biotin-heparin (50 μg/mL). Binding experiments to heparin were performed by injecting inhibitors at desired concentrations and at a rate of 40 μL/min. Between binding assays, the surface was regenerated by exposure to an injection of 10 mM HCl. Fitting has been performed by Trace Drawer software using a ‘one-to-one two-state algorithm’, which considers a 1:1 binding with a further equilibrium like a conformational change. Results obtained from three independent experiments at three different concentrations of the ligands were fit globally to render the corresponding on/off rate constants and the apparent dissociation constants (KDapp Table 1, as shown below).
Fluorescence spectroscopy titration: Fluorescence emission and excitation spectra were collected on a Photon Technology International Instrument, the Fluorescence Master Systems, using the Software Felix32 and cuvettes with 10 mm path length. Stock solutions of the corresponding binder (20 μM) and heparin (18 IU/mL) were prepared in 1 mM Bis-Tris buffer at pH 7.5. Then, 2 mL of the binder solution was placed on a quartz cell and the emission fluorescence spectrum was measured upon excitation at 280 nm. Then, small volumes of the heparin stock solution were added to the cell, and the fluorescence spectra was acquired after each addition. For 3AC, the titration experiments were fitted using HypeSpec2008 software, which allows a non-linear global fitting of the full emission spectra to a binding mode as defined by the user.
Blood coagulation factor in vitro enzymatic assays: Recombinant antithrombin Ill and coagulation Factor Xa were obtained from the Berichrom Heparin test, supplied by SIEMENS. Following the indications of the test kit, stock solutions were prepared as follows: Human antithrombin III (1 IU/mL), Factor Xa reagent (0.4 μg/mL, human plasma fraction with the additives Tris, sodium chloride and EDTA) and a chromogenic substrate specific for factor Xa (4 mM of Z-D-Leu-Gly-ArgANBA-methyl amide). On the other hand, 4-nitroaniline (Sigma Aldrich) was added to the substrate solution at a concentration of 1.6 mM and was used as internal standard to quantify the hydrolysis of the chromogenic substrate. Heparin (sodium salt from porcine intestinal mucosa, polydisperse, from 6000 to 30000 Daltons) was purchased from Sigma-Aldrich. All compounds were dissolved in mili-Q water at the desired stock concentrations prior to start the assays and kept at 4° C. Various concentrations of the ligand, heparin (0.1 IU/mL), human antithrombin Ill solution (3.5 μL) and Factor Xa reagent solution (35 μL) were added in order to an Eppendorf and brought to a total volume of 145 μL. Then, 20 μL of Reagent Substrate solution was added to start the experiment and the mixture was vigorously shaken at 25° C. 20 μL samples were taken at minutes 5/10/15/20/30/50/80/120, diluted with 40 μL of acetic acid (20% v/v), and injected in the analytical HPLC. The gradient ranged from 5% ACN (0.1% formic acid) in water (0.1% formic acid) to 100% ACN in 24 minutes using a 15×4.6 mm KROMAPHASE C18 5.0 μm column (retention time of cleaved chromophore 9.1 min, retention time of chromogenic substrate 13.9 min, retention time of 4-nitroaniline 15.4 min). Concentrations of reagents have been adjusted compared with previous studies with the intention to slow down the total exhaustion of peptide substrate. In this way the activity can be more carefully modulated and any change is easier to detect. FXa/ATIII activity was represented as percent of hydrolysis, which was calculated from the normalized area of cleaved peptide at 405 nm at each corresponding time point. Experiment carried out in absence of heparin was considered as maximum of activity while experiment with heparin and no ligand was considered as negative control (maximum inhibition of FXa by heparin). Concentration of heparin was selected for the measurement to render a significant inhibition within experimental time, while allowing the reaction to proceed.
Ex vivo blood coagulation assays: Freshly collected mouse blood was collected and directly used without further treatment. 300 μL aliquots were prepared. To them, Hep (130 μM), and various concentration of ligand (3AC or 3FF) were added. The samples of the different conditions were added to an Eppendorf tube and a picture was taken after 15 minutes. The clot formation was confirmed by turning around the Eppendorf vials.
In vivo tail transection assays with mice: Eight-weeks old CD-1 male mice (Janvier-Labs) were used for the study. Animals were housed under a 12 h light: dark cycle in an environmentally controlled room and free access to water and food. Mice were randomly assigned into 6 groups (n=6 for each group). Animals were anesthetized by i.p. injections of 0.465 mg/kg xylazine (Rompun, Bayer DVM) and 1.395 mg/kg ketamine (Imalgene 100, Merial Laboratorios). After anesthetizing them, different solutions were injected intravenously according to the assigned group: Saline group (only saline was given), Hep group (Hep injection, 100 IU/kg), 3AC (two groups, Hep injection followed by injection of 3AC at 2.2 mg/kg or 4.4 mg/kg) and 3FF (two groups, Hep injection followed by injection of 3FF at 2.2 mg/kg or 4.4 mg/kg). Two additional control groups (n=3) were included in which only the ligand (3AC or 3FF) at the highest dose (4.4 mg/kg) was injected. At 5 minutes after injections, tails were transected at 5 mm from the tip and immediately inserted in a tube containing 1 ml of saline buffer immersed in a water bath at 37° C., where the blood draining out of the wound was collected for 10 minutes. The blood draining out from the wound was collected in each tube. Tails were let bleed during 10 minutes. The total blood volume in each tube was quantified by spectrophotometry (absorbance at 414 nm) from a standard curve that was constructed with known volumes of blood hemoglobin concentration and corresponding absorbance value. Statistical analysis of the data was done with Kaleida Graph 4.5.4 using ANOVA.
Compounds of Formula I may be prepared following different methods known by a person skilled in the field of organic synthesis. In particular, they may be obtained following the routes depicted in Scheme 1.
First, spermine or any other suitable polyamine reacts with 2 eq. of an arylaldehyde (R1) dissolved, for example in THF, to give the corresponding imine derivative. The imine reacts with a reductive reactant, such as NaBH3CN, to obtain the desired 3R1R1 compound of Formula I.
First, spermine or any other suitable polyamine reacts with 1 eq. of an arylaldehyde (R1) to give the corresponding imine derivative. The imine reacts with a reductive reactant, such as NaBH3CN, to obtain the desired 3R1.
Then, intermediate 3R1 compound dissolved in MeOH, is reacted with a second aryl aldehyde of interest R2, affording another imine, which after reduction gives the desired 3R1R2 compound of Formula I.
Purification of intermediates and/or final compounds of Formula (I), if required, can be carried out by HPLC at semipreparative level.
Compounds 3AA (2,2′-(2,6,11,15-tetraazahexadecane-1,16-diyl)diphenol), 3BB (N1,N1′-(butane-1,4-diyl)bis(N3-(2-methoxybenzyl)propane-1,3-diamine)) and 3AL (2-(16-(naphthalen-1-yl)-2,6,11,15-tetraazahexadecyl)phenol), used for comparative purposes were previously characterized in Carbajo, D., Pérez, Y., Bujons, J. & Alfonso, I. Live-Cell-Templated Dynamic Combinatorial Chemistry. Angew. Chem. Int.
Spermine (120 mg, 0.594 mmol) was dissolved in 75 mL of THFanh at 0° C. 2-hydroxybenzaldehyde (58 μL, 0.534 mmol) dissolved in 20 mL of MeOH was dropwise added and the reaction was stirred overnight. The day after, NaBH3CN (67 mg, 1.07 mmol) was added and stirred 24 h. Reaction was stopped by addition of 3 mL of H2O and 3 mL of HCl 1M. THF was carefully rotavapored and reaction crude was purified by reverse phase chromatography with a gradient of ACN (0.1% TFA) and water (0.1% TFA). 77 mg of 3A were obtained as white powder (Yield=47%, Purity=91.1%).
1H RMN (H2O/D2O): δ 7.2 (2H, m), 6.85 (2H, m), 4.11 (2H, s), 2.97 (12H, m), 1.94 (4H, m), 1.61 (4H, m). 13C RMN (H2O/D2O): δ 154.9, 131.7, 131.5, 120.6, 115.5, 114.8, 46.9, 44.4 (, 43.6, 36.4, 23.6, 22.6, 22.4.
MS: Calculated for C17H32N4O: 308.4700; found: 309.2684 (M+H)+
Following an analogous procedure to that described for 3A but using 4-hydroxybenzaldehyde, intermediate 3J was obtained as white powder (Yield=66%, Purity=98.1%).
1H RMN (H2O/D2O): δ 7.18 (2H, d, J=8 Hz), 6.78 (2H, d, J=8 Hz), 3.95 (2H, s), 2.92 (12H, m), 1.89 (4H, m), 1.58 (4H, m). 13C RMN (H2O/D2O): 156.7, 131.4, 123.3, 115.9, 50.8, 47.1, 47.0, 44.8 (C10), 44.6, 43.9, 36.7, 24.2, 23.3, 23.2.
MS: Calculated for C17H32N4O: 308.4700; found 309.2698 (M+H)+
Spermine (54 mg, 0.267 mmol) was dissolved in 25 mL of THFanh at 0° C. 5-bromo-2-hydroxy-3-methoxybenzaldehyde (54 mg, 0.24 mmol) dissolved in 10 mL of MeOH was dropwise added and the reaction was stirred overnight. The day after, NaBH3CN (30 mg, 0.48 mmol) was added and stirred 24 h. Reaction was stopped by addition of 2 mL of H2O and 2 mL of HCl 1M. THF was carefully rotavapored and reaction crude was purified by reverse phase chromatography with a gradient of ACN (0.1% TFA) and water (0.1% TFA). 30 mg of 30 were obtained as brown powder (Yield=31%, Purity=97.3%).
1H RMN (H2O/D2O): δ 7.18 (1H, s), 7.01 (1H, s), 4.11 (2H, s), 3.77 (3H, s), 2.98 (12H, m), 1.96 m (4H, H9, m), 1.65 (4H, m). 13C RMN (H2O/D2O): δ 148.4, 144.0, 125.2, 118.5, 116.6, 111.1, 56.3, 46.9, 45.8, C14), 44.4, 44.3, 36.4, 23.6, 22.7, 22.4.
MS: Calculated C18H33BrN4O2: 416.1787; found: 419.1703 and 417.1704 (M+H)+
Compounds of 3R1R1 type
Spermine (60 mg, 0.297 mmol) was dissolved in 25 mL of MeOH. 2-hydroxy-1-naphthaldehyde (193 mg, 1.039 mmol) was then added dissolved in 12 mL of MeOH. The solution was stirred 6 h. Then, NaBH3CN (126 mg, 2 mmol) was added and the reaction was stirred 24 h. After addition of H2O (2 mL) and HCl 1M (2 mL), the reaction was stirred 1 h. Solvent was removed by rotavaporation. Reaction mixture was purified by reverse phase chromatography with a gradient of ACN (0.1% TFA) and water (0.1% TFA) to yield 78 mg (51%) of pure product 3FF (99% by HPLC). 1H RMN (H2O/D2O): δ 7.86 (m, 6H), 7.54 (t, 2H, J=8 Hz), 7.36 (t, 2H, J=8 Hz), 7.18 (d, 2H, J=12 Hz), 4.65 (s, 2H), 3.14 (m, 4H), 3.00 (m, 8H), 2.04 (m, 4H), 1.62 (m, 4H). 13C RMN (H2O/D2O): 154.1, 132.4, 132.1, 128.9, 128.4, 127.8, 123.7, 121.6, 117.3, 46.8, 44.4, 43.8, 41.6, 22.6, 22.4.
MS: Calculated for C32H42N4O2: 514.7140; found: 515.3389 (M+H)+
Spermine (20 mg, 0.099 mmol) was dissolved in 5 mL of MeOH at 0° C. 1-hydroxy-2-naphthaldehyde (40 mg, 0.215 mmol) was carefully added dissolved in 2 mL of MeOH. After 6 h, solution was clear red. NaBH3CN (28 mg, 0.444 mmol) was then added. The day after, solution had become brown. Reaction was stopped by addition of 0.5 mL of H2O and 0.5 mL of HCl 1M. Solvent was removed and crude was purified by reverse phase chromatography with a gradient of ACN (0.1% TFA) and water (0.1% TFA). 8.5 mg of brown solid was obtained as 3GG pure product (Purity=97.4%, Yield=16%).
1H RMN (H2O/D2O): δ 8.06 (2H, dd), 7.82 (2H, dd), 7.48 (6H, m), 7.3 (2H, d), 4.33 (4H, s), 3.05 (4H, tr), 2.93 (8H, m), 1.99 (4H, m), 1.57 (4H, m). 13C RMN (H2O/D2O): δ 150.9, 135.0, 128.1, 127.8, 127.4, 126.3, 124.9, 121.4, 121.2, 113.1, 46.8, 44.4, 43.6, 22.6, 22.4.
MS: Calculated for C32H40N4O2: 514.3308; found: 515.3438 (M+H)+
3A (53 mg, 0.171 mmol) was dissolved in 15 mL of THFanh at 0° C. 1-hydroxy-2-naphthaldehyde (35 mg, 0.205) was added dissolved in 1 mL of THFanh. After 4 h, NaBH3CN (24 mg, 0.377 mmol) was added and the reaction stirred overnight. The day after, reaction was stopped by addition of 0.5 mL of H2O and 0.5 mL of HCl 1M. Solvent was removed and crude purified by reverse phase chromatography with a gradient of ACN (0.1% TFA) and water (0.1% TFA). 32 mg of 3AG were obtained as a light brown powder (Purity=97.4%, Yield=40%)
1H RMN (H2O/D2O): δ 8.06 (1H, dd, J1=3.4 Hz, J=6.3 Hz); 7.82 (1H, dd, J=3.4 Hz, J2=6.3 Hz); 7.49 (3H, m), 7.31 (1H, d, J=8.4 Hz3), 7.22 (2H, m,), 6.85 (2H, m), 4.32 (2H, s), 4.11 (2H, s), 3.00 (12H, m), 1.99 (4H, m), 1.59 (4H, m). 13C RMN (H2O/D2O): 155.0, 150.9, 135.0, 131.7, 131.5, 128.1, 127.8, 127.4, 126.3, 125.1, 121.4, 121.2, 120.5, 117.0, 115.5, 113.1, 46.9, 44.4, 43.6, 22.6, 22.4.
MS: Calculated for C28H40N4O2: 464.3151; found MS 465.3228 (M+H)+
3A (20 mg, 0.065 mmol) was dissolved in 10 mL of THFanh at 0° C. 2-hydroxy-1-naphthaldehyde (13 mg, 0.078 mmol) was added dissolved in 1 mL of THFanh. After 4 h, NaBH3CN (9 mg, 0.143 mmol) was added and the reaction stirred overnight. The day after, reaction was stopped by addition of 0.5 mL of H2O and 0.5 mL of HCl 1M. Solvent was removed and crude purified by reverse phase chromatography with a gradient of ACN (0.1% TFA) and water (0.1% TFA). 6 mg of 3AF were obtained as a light brown powder (Purity >99%, Yield=19%)
1H RMN (H2O/D2O): δ 7.90 (3H, m), 7.57 (1H, dd, J=8 Hz), 7.4 (1H, dd, J=8 Hz), 7.29 (2H, m), 7.21 (1H, d, J=9 Hz), 6.91 (2H, m), 4.68 (2H, s), 4.19 (2H, s), 3.17 (2H, m), 3.02 (10H, m), 2.08 (4H, m), 1.66 (4H, m). 13C RMN (H2O/D2O): δ 155.1, 154.2, 132.5, 132.2, 131.7, 131.6, 129.0, 128.5, 127.9, 123.8, 121.3, 120.6, 117.8, 117.1, 115.6, 114.9, 108.3, 46.9, 44.5, 43.9, 43.7, 41.7, 22.7, 22.5, 22.4.
MS: Calculated for C28H40N4O2: 464.3151; found: 465.3169 (M+H)+
3A (30 mg, 0.097 mmol) was dissolved in 5 mL of methanol at 0° C. 9H-fluorene-2-carbaldehyde (110 mg, 0.580 mmol) was added dissolved in 15 mL of methanol. The day after, NaBH3CN (70 mg, 1.15 mmol) was added and the reaction stirred overnight. Reaction was stopped by addition of 2 mL of H2O. Solvent was removed and crude purified by reverse phase chromatography with a gradient of ACN (0.1% TFA) and water (0.1% TFA). 5 mg of 3AC were obtained as a white powder (Purity >99%, Yield=12%)
1H RMN (H2O/D2O): δ 7.82 (2H, m), 7.56 (2H, m), 7.25 (3H, m), 7.21 (2H, m), 6.88 (2H, m), 4.18 (2H, s), 4.14 (2H, s), 3.85 (2H, s), 3.00 (12H, m), 2.01 (4H, m), 1.62 (4H, m). 13C NMR (H2O/D2O): δ 155.0, 144.4, 143.9, 142.5, 140.2, 131.7, 131.6, 128.7, 128.6, 127.7, 127.1, 126.6, 120.5, 120.4, 120.3, 117.7, 115.5, 114.5, 51.4, 46.9, 44.4, 43.6, 36.3, 22.6, 22.4.
MS: Calculated for C31H42N4O: 486.7040; found: 487.4005 (M+H)+
3A (15 mg, 0.0485 mmol) was dissolved in 5 mL of THFanh at 0° C. 2-naphtaldehyde (9 mg, 0.0582 mmol) was added dissolved in 1 mL Of THFanh. After 4 h, NaBH3CN was added and the reaction stirred overnight. The day after, reaction was stopped by addition of 0.5 mL of H2O and 0.5 mL of HCl 1M. Solvent was removed and crude purified by reverse phase chromatography with a gradient of ACN (0.1% TFA) and water (0.1% TFA). 15 mg of 3AN were obtained as a white powder (Purity >99%, Yield=69%)
1H RMN (H2O/D2O): δ 7.87 (m, 4H), 7.50 (m, 2H7.43 (d, J=8.44 Hz, 1H), 7.22 (m, 2H), 6.85 (tr, J=6.97 Hz, 2H), 4.3 (s, 2H), 4.12 (s, 2H), 3.00 (m, 12H), 1.98 (m, 4H), 1.59 (m, 4H). 13C RMN (H2O/D2O): δ 155.0, 133.1, 132.7, 131.7, 131.5, 129.6, 129.1, 128.0, 127.7, 127.4, 127.0, 126.4, 120.5, 117.0, 115.5, 51.3, 46.9, 46.8, 44.4, 44.3, 43.7, 43.6, 22.6, 22.5, 22.4.
MS: Calculated for C28H40N4O: 448.3202; found: 449.3520 (M+H)+
3O (15 mg, 0.036 mmol) was dissolved in 5 mL of THFanh at 0° C. 1-naphthaldehyde (6 μL, 0.043 mmol) was added dissolved in 1 mL of THFanh. The day after, NaBH3CN (4.5 mg, 0.072 mmol) was added and the reaction stirred overnight. Reaction was stopped by addition of 0.5 mL of H2O and 0.5 mL of HCl 1M. Solvent was removed and crude purified by reverse phase chromatography with a gradient of ACN (0.1% TFA) and water (0.1% TFA). 7 mg of 3LO were obtained as a brownish powder (Purity=98.7%, Yield=35%)
1H RMN (H2O/D2O): δ 7.90 (3H, m), 7.50 (4H, m), 7.14 (1H, d J=4 Hz), 6.97 (1H, d, J=4 Hz), 4.65 (2H, s), 4.08 (2H, s), 3.73 (3H, s), 3.12 (2H, m), 2.96 (1OH, m), 1.98 (4H, m), 1.59 (4H, m). 13C RMN (H2O/D2O): δ 148.4, 144.1, 133.6, 130.8, 130.6, 129.5, 129.1, 127.5, 126.7, 126.3, 125.6, 125.3, 122.4, 118.6, 116.7, 111.2, 56.4, 48.1, 46.9, 45.9, 44.3, 22.7, 22.6, 22.4.
MS: Calculated C29H41BrN4O2: 557.5770; found: 557.2440 and 559.2421 (M+H)+
3O (15 mg, 0.036 mmol) was dissolved in 5 mL of THFanh at 0° C. 2-hydroxy-1-naphthaldehyde (7 mg, 0.043 mmol) was added dissolved in 1 mL Of THFanh. The day after, NaBH3CN (4.5 mg, 0.072 mmol) was added and the reaction stirred overnight. Reaction was stopped by addition of 0.5 mL of H2O and 0.5 mL of HCl 1M. Solvent was removed and crude purified by reverse phase chromatography with a gradient of ACN (0.1% TFA) and water 0.1% TFA). 5 mg of 3FO were obtained as a white powder (Purity >99%, Yield=25%)
1H RMN (H2O/D2O): δ 7.86 (3H, m), 7.54 (1H, dd, J=7.5 Hz), 7.36 (1H, dd, J=7.5 Hz), 7.18 (2H, m), 7.01 (1H, d, J=2 Hz), 4.64 (2H, s), 4.12 (2H, s), 3.88 (3H, s), 3.12 (2H, m), 3.00 (10H, m) 2.03 (4H, m), 1.63 (4H, m). 13C RMN (H2O/D2O): δ 154.2, 148.4, 144.4, 132.5, 132.1, 129.0, 128.4, 127.9, 125.2, 123.7, 121.2, 117.3, 116.6, 114.8, 111.2, 108.2, 56.3, 46.9, 44.4, 43.8, 41.6, 22.6, 22.5.
MS: Calculated C29H41BrN4O3: 573.5760; found: 575.2441 and 573.2471 (M+H)+
3J (23 mg, 0.074 mmol) was dissolved in 10 mL of THFanh at 0° C. After that, 2-hydroxy-1-naphthaldehyde (15 mg, 0.089 mmol) was added dissolved in 5 mL of THFanh. The day after, NaBH3CN (9 mg, 0.148 mmol) was added and the reaction was stirred overnight. Reaction was stopped by the addition of 1 mL of H2O and 1 mL of HCl 1M. Solvent was removed and crude was purified by reverse phase chromatography with a gradient of ACN (0.1% TFA) and water (0.1% TFA). 28 mg of 3FJ were obtained as a white fluffy solid (Purity >98.5%, Yield=82%).
1H RMN (H2O/D2O): δ 7.81 (3H, m), 7.5 (1H, dd, J1=7.5 Hz, J2=1 Hz), 7.32 (1H, dd, J1=7.5 Hz, J2=1 Hz), 7.19 (2H, d, J3=8.5 Hz), 7.14 (1H, d, J5=8 Hz), 6.79 (2H, d, J3=8.5 Hz), 4.6 (inside water, s), 4.02 (3H, s), 3.09 (2H, m), 2.95 (10H, m), 1.95 (4H, m), 1.58 (4H, m). 13C RMN (H2O/D2O): δ 156.7, 154.2, 132.4, 132.1, 132.0, 131.6, 129.0, 128.4, 127.8, 123.7, 121.2, 117.3, 115.9, 108.2, 50.6, 46.9, 44.4, 43.7, 43.4, 41.7, 40.0, 22.6, 22.5.
MS: Calculated C28H40N4O2: 464.3151; found: 465.3310 (M+H)+
Binding of the spermine derivatives to the heparin target. Surface Plasmon Resonance (SPR) on heparin-functionalized chips were used to determine the apparent dissociation constant of selected molecules (KDapp, Table 1). The SPR-determined KDapp for molecules containing an ortho phenol and a large aromatic ring (3AF and 3AG) display a KDapp in the low micromolar range (entries 1 and 2). Quite remarkably, 3FF and 3AC render sub-micromolar affinity to Hep by SPR (entries 3 and 4). Moreover, two of the identified hits (3AC and 3FF) show higher affinity to Hep than ciraparantag (entry 5).
Many binders are fluorescent and their emission spectra are perturbed by the interaction with Hep, allowing to obtain additional information about the supramolecular complexes in solution. The emission spectrum of 3AC is strongly reduced upon addition of up to 2 equivalents of the Hep disaccharide repeating units, slightly recovering upon additional Hep (
The 3AC-Hep binding was also studied using 1H NMR, in this case with a shorter heparin oligomer, dp14, which on average contains seven disaccharide repeating units. The titration of 3AC with dp14 (
In vitro inhibition of heparin activity. The effect of the binders as Hep antidotes can be tested in vitro using an enzymatic reaction related to the blood coagulation process (
Reversing the anticoagulant activity of heparin: In order to check the efficacy of the antidotes in a more representative environment, 3FF and 3AC were tested in real blood coagulation assays. Thus, it has been monitored the coagulation of freshly extracted mouse blood in the absence or presence of Hep, and upon addition of different concentrations of 3FF and 3AC. By simply turning around the vials after 15 minutes (
3FF and 3AC were tested in an in vivo coagulation model. It was thus performed the tail transection assay with mice after consecutive injection of Hep, and the drugs at two different doses each (
| Number | Date | Country | Kind |
|---|---|---|---|
| 21382962.5 | Oct 2021 | EP | regional |
| Filing Document | Filing Date | Country | Kind |
|---|---|---|---|
| PCT/EP2022/051489 | 1/24/2022 | WO |
