The present invention generally relates to the detection of microbial toxins and determination of the presence of bacteria using functionalized micro-robotic devices, automated fluorescent recognition and detection methods, and related detection systems.
There are millions of species of bacteria in the human body. Good bacteria can help the human body to break down big food molecules into useable fuel and produce vitamins to protect the body from diseases, while bad bacteria might make our body uncomfortable, and whose infection may trigger a series of bacteria-associated diseases and even death. To cure bacterial infections early, rapid, sensitive and early identification of specific bacteria in clinical specimens is advantageous. For example, Clostridium difficile (C. diff) is a gram-positive anaerobe and gastrointestinal pathogen responsible for hundreds of thousands of nosocomial infections in developed nations, whose infection can cause a series of C. diff-associated disease (CDAD), from mild diarrhea to even fatal pseudomembranous colitis. Commercially available diagnostic strategies of C. diff commonly include enzyme immunoassays (EIAs), cell culture cytotoxicity neutralization assay (CCNA), glutamate dehydrogenase (GDH) assay and molecular assays performed on stool samples, sigmoidoscopy or colonoscopy, and computerized tomography (CT) scan. These commercially diagnostic strategies either utilize a specific targeting detection of two toxins produced by C. diff through conjugation technique or perform the directing observation of suspected infected parts. However, these conventional screenings of C. diff are limited by high analytical cost, strong dependence on a reference, long process times (e.g. 24-48 hours), widely varying sensitivity and specificity, non-specific and low-accurate information from clinic images and the requirement of obvious infectious parts. Developing a simple, rapid, and real-time-monitoring diagnostic approach would be advantageous for clinical needs and helpful to the clinician for the prescription of an efficient treatment at the beginning of the infection.
Embodiments of the present invention relates to materials, devices, methods and systems for implementing detection of target molecules, for example detection of toxins, in a fluid. The detection may be based on intensity-recognition and tracking of continuously moving fluorescent microrobots with a motion control system and image processor. The present invention includes methods of the detection of bacteria toxins performing at least one cycling step within tens of minutes, which may include an initial optimized selecting step and a continuous moving detection step. Furthermore, the present invention relates to all the materials, devices, and systems that are designed for the detection of bacteria toxin.
In one aspect, the present invention provides a device propelled in a fluid for detecting a target molecule, comprising a microrobot. Artificial micro-/nano-robots powered by various types of energy sources may be used for remote sensing strategies by utilizing the distinctive mechanical motion and easy functionalization inherited from micro-/nano-materials. Mobile sensing devices may offer real-time and on-site measurement, and also may cause an “on-the-move” reaction to accelerate the reaction rate produced by built-in sample solution mixing and improved contact from continuous movement. The introduction of motion dimension provides a solution to high-efficient chemo-/bio-sensing analysis. Embodiments of the present technology may include a biohybrid functionalized microrobot, to interact with target molecules, for example toxin molecules.
The biohybrid functionalized microrobot includes a core, a magnetic coating, and a detection probe coating. The core maybe a natural spore that has a unique and intricate three-dimensional sculptured architecture and can be cultivated in large quantities. On the surface of the core is a middle layer. The middle layer may be composed of hierarchical structure for actuating and steering in a fluid as well as anchoring a functionalized group. On the surface of the middle layer is a detection probe coating which may be composed of functionalized carbon quantum dots for attaching to target molecules, for example toxin molecules, in a fluid in order to produce a change in fluorescence for tracking. With the detection probe coating, the biohybrid functionalized microrobot is adapted to detect the presence of target molecules, in order to detect the presence of the biological targets in a specimen based on fluorescent changes with “on-the-move” reaction.
In embodiments, the biohybrid functionalized microrobots can be configured through a step-by-step coating technique. The as-obtained functionalized microrobots can be employed to detect a series of the target toxins based on fluorescent changes caused by continuous moving in a variety of media within tens of minutes. The microrobot can include a natural spore core, a middle layer coating, and a detection probe coating. The natural spore core can include the spore of any plants and fungi. The core may also be a synthetic core, and preferably a synthetic porous core. For example, the core may include mesoporous silica micro/nanostructures. The presence of the porous core is conducive to: the fabrication of functionalized microrobots on a large scale, the visual observation for tracking, and the high mass loading of detection probes for good sensitivity below the level of nanogram per milliliter comparable with the that of commercially available ELISA. The middle layer coating can include an actuated and steered structure and a functionalized component containing magnetic nanoparticles conjugated with a self-assembly monolayer molecule, which can provide the microrobot with magnetic properties for locomotion in a magnetic field generator and the functionality for further conjugation. The magnetic coating can include Fe3O4 nanoparticles, which can be extended to other magnetic particles such as nickel, iron and their oxides, and other magnetic metallic oxides. As used herein, the term “magnetic” refers to a material property of responding to a magnetic field, for example but not limited to paramagnetic and ferromagnetic. The detection probe coating can include the carbon dots with fluorescent emission and various specific groups or ligand molecules, for example, oligosaccharide targeting to repetitive oligopeptide, phenylboronic acid (PAPA) targeting to endotoxin, different aptamers binding to mycotoxins and ricin B toxin. The detection probe coating may also include other fluorescent probes with the same functionality of targeting detection. In embodiments, the detection probe coating may include different probe types having different specific targeting ability for detection of different targets. The detection probes in the detection probe coating can bind and form a complex with the target molecules, for example biological targets. Such a complex formation can be detected and the presence of the target molecules confirmed based on sensing fluorescent changing of the moving functionalized microrobot. The targets in a tested fluid can include bacteria toxins, for examples, toxin A and toxin B of C. diff toxin, endotoxins of Gram-negative bacteria, mycotoxin (ochratoxin A and fumonisine B1) from fungi in rotten foods, even and plant ricin B toxin.
In another aspect, the present invention provides a system of detecting bacteria toxin in a fluid based on functionalized microrobots together with automated fluorescent recognition and detection methods. The system can include mobile fluorescent microrobots as described above and a motion control system propelling the microrobot locomotion in a fluid in automated or manual operation modes. The system further includes an imaging device, for example an inverted fluorescent microscope or a fluorescent emission multi-reader, and can be directly applied to detect the presence of the toxin targets. The method includes the initial optimized recognition of the fluorescent microrobot and the following intensity estimation with the motion, realized by a motion control system.
In embodiments, the system can be configured using functionalized microrobots and a motion control system composed of a magnetic field generator, a controller box and a motorized sample platform for fluorescent observation. The motion control system can propel the functionalized microrobots swimming in various media for detecting the presence of a certain concentration of the target toxin based on the changing of fluorescent intensity induced by the reaction of “chemistry-on-the-move”. The motion control system also can control the functionalized microrobots to locomote in manual or automated operation modes. A magnetic field generator provides an external rotating magnetic field, and include a plurality of electromagnetic coils and/or a rotating magnet. A controller box includes hardware and software to control the automated planning of motion path of the functionalized microrobot to complete the real-time monitoring of the fluorescent changes. A sample platform may include a motorized automated stage and a sample holder and may be used to move the sample for initial optimized recognition and fluorescent observation, as will be discussed in greater detail below. The system can be integrated onto inverted fluorescent microscope or with a fluorescent emission multi-reader for detecting the presence of the bacteria toxin in a biological or clinical specimen via sensing the complex formation based on accelerated fluorescent changes induced by the motion of the functionalized microrobots.
The subject matter described in this invention can be implemented in specific ways that provide one or more of the following merits. For examples, the disclosed functionalized microrobots can be produced on a large scale using low-cost natural spores via stepwise coating, which is superior to the conventional time-consuming and expensive template-assisted synthesis that commonly uses template like anodic alumina oxide templates to obtain desired structures through initial deposition and following the removal of the template. The disclosed functionalized microrobot include the intricate three-dimensional sculptured and porous structure of the spore providing active sites for attaching functional nanoparticles in a coating process and therefore providing contact reaction sites for a target molecule. Functionalized microrobots composed of magnetic nanoparticles can be actuated remotely under the simultaneous noncontact directional control by an external magnetic field, better than the fuel-propelled microrobots that require additional directional guidance. Functionalized microrobot also can be propelled in various fluids, including biofluids such as serum, mucus, urine, stool supernatant and gastric acid. Microrobots further show controllable swimming tracking trajectories. Functionalized microrobot comprising carbon dots may emit red light under the excitation with green light that can be tracked under a dark field. In embodiments, microrobots may include fluorescent nanoparticles other than carbon dots, for example polymer dots, silicon nanoparticle, molybdenum disulfide (MoS2) nanoparticles, Mxene nanoparticles, and combinations thereof. The fluorescent nanoparticles may emit the same or different wavelengths of light in response to the same or different wavelength of excitation as the carbon dots. The functionalization of the microrobots can be introduced by carbon dots with ligand molecules, e.g., oligosaccharides, aptamers, phenylboronic acid, and other toxin targeting molecules. Functionalized microrobots can establish effective motion-based detection of target molecules by observing the fluorescent changes with the motion. The movement of functionalized microrobots can enhance the solution intermixing and improve the diffusion rate of target molecules in a tested solution. Improved intermixing and diffusion lead to producing a faster, more favorable recognition reaction, compared with static microrobots only dependent on conventional diffusion. Functionalized microrobots can provide advantages of high detection efficiency, scaled-up synthesis, and trace sample analysis in the level of ng/mL in a variety of biomedically and clinically relevant applications. Functionalized microrobots with detection probes are less expensive and able to produce and possess distinctive motion performance compared to commercial probes (antibodies) of ELISA.
Motion control systems of the disclosed technology can make functionalized microrobots move in different modes. The motion control system may include an automate control operation mode wherein the motion of the microrobots is predetermined and is stored in a memory and executed to cause the stored motion to be executed. The motion control system may include a manual mode wherein a user vis a user interface may control the motion of the microrobots in real time. In embodiments, the automated control operation mode may have higher accuracy than the manual mode. For example, the automated control mode may include a control algorithm which causes the microrobots to follow a desired path with an accuracy error of less than 5 μm. Motion control systems of the disclosed technology can be used to search for microrobots having a the highest fluorescence of all the microrobots in a test sample by performing initial optimized recognition at the beginning of detection so as to enhance the detection sensitivity. The sensitivity is enhanced by excluding detection of microrobots with an initial low florescence, which in the detection step may be considered a quenched microrobot which may lead to false positive detection of a toxin.
Motion control system of the disclosed technology also can propel the microrobots continuously and automatically in the tested specimen within required times in pre-designed paths. In embodiments, the pre-designed paths cover an area within the field of view of the imaging device used to detect fluorescence in the detection process. The detection process is rapid and automated after the sample is placed in the sample holder. Further, the detection process is faster and simpler than standard enzyme-linked immunosorbent assay (ELISA). For example, the detection process may take in the tens of minutes, e.g. 10-30 minutes, whereas ELISA takes more than two hours. Unlike ELISA which is performed through a tedious incubation and rinsing process, the present technology only adds the microrobots into the tested supernatant and then evaluates the results using detection system.
The ability to selectively detect target molecules, for example bacteria toxins, using the motion control system equipped with functionalized microrobot can be utilized in many bioanalytical fields, e.g., including food safety, bio-/chemical-threat detection, and early diagnostic stage of bacteria-infected diseases. The details of one or more embodiments of the invention are set forth in the accompanying drawings and the description below. Other features, objects, and advantages of the invention will be apparent from the drawings and detailed description, and from the claims.
Illustrative aspects of the present disclosure are described in detail below with reference to the following drawing figures. It is intended that that embodiments and figures disclosed herein are to be considered illustrative rather than restrictive. Like reference symbols and designations in the various drawings indicate like elements.
The present invention may be understood more easily by reference to the detailed description, which forms a part of this disclosure. This invention is not limited to the specific materials, devices, methods or systems described and/or shown herein. Unless otherwise defined, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art to which this invention belongs. Although materials, devices, methods and systems similar or equivalent to those described herein can be used in the practice or testing of the present invention, suitable methods and materials are described below. The present invention involves two aspects, a functionalized microrobotic device and a resultant detection system based on automated fluorescent recognition and detection methods.
For example, the microrobots of the disclosed technology are capable of movement in a controlled manner and offer capabilities, e.g., including fluorescent tracking as a biomarker and motion detection of target molecule in a fluid. The disclosed micro-/nanomaterials and engineered microstructures may also be referred to as magnetic spores, fluorescent magnetic microrobots, steerable microrobots, and magnetic micromachines. In embodiments, the microrobots of the disclosed technology can be configured as sensing microrobots or micromachines that can detect the presence or absence of target molecules from biological or nonbiological specimens.
In embodiments of the present invention, biohybrid functionalized microrobots may be propelled in a rotating magnetic field in a tested fluid. The magnetically actuated motion makes the biohybrid functionalized microrobots have various applications including cargo delivery, biomedicine, environmental remediation, manipulation of small objects, and motion-based biosensing. For example, these functionalized microrobots provide the capability of detecting the presence of a target molecule in a specimen based on fluorescent changes with “on-the-move” reaction.
The ability to detect the presence of a targeted molecule can have implications, for example, in early screening, diagnosis and monitoring of bacteria, as well as in understanding the fundamental biology of bacteria-associated diseases. Functionalized microrobots can be implemented for in-vitro detection of bacteria toxins and even bacteria in a static or stationary fluid.
For example, the disclosed functionalized microrobot comprising a ligand molecule (e.g., an oligosaccharide) can enable the sensing of a targeted bacteria toxin having a receptor molecule (e.g., a repetitive oligopeptide), where a high affinity existing between the ligand molecule and receptor molecule triggers the fluorescent quenching. For example, oligosaccharide-functionalized microrobots can sense a target bacteria toxin based on the fluorescent change induced by a selective binding ability of attached oligosaccharide to the specific targeted oligopeptide of the C. diff toxin. A magnetic propulsion mechanism can enable continuous movement in a stable speed. For examples, the disclosed functionalized microrobot can be magnetically actuated continuously to detect the presence of a target C. diff toxin in a tested fluid, e.g., a static complex biological fluid. Such a continuous movement can enable effective detection of toxin, e.g., C. diff toxin in clinical stool supernatant due to enhancing the diffusion from “chemistry-on-the-move” reaction.
Exemplary implementations were performed to demonstrate the described functionalities and capabilities of the disclosed functionalized microrobot technology. For example, the detection of oligosaccharide-functionalized microrobot were shown to be highly specific to target C. diff toxins (toxin A and B) having the corresponding repetitive oligopeptides. Exemplary microrobot were functionalized with a specific ligand for the oligopeptide region expressed on a toxin secreted by bacteria. For example, an oligosaccharide-functionalized carbon dots can be attached to the modified surface of an exemplary microrobot to form an oligosaccharide-functionalized microrobot. Exemplary oligosaccharide-functionalized microrobots were utilized in exemplary implementations for detection of C. diff toxins expressing the combined repetitive oligopeptides (CROP). CROP is a protein being made up of multiple 19-24 amino acid short repeats and 31 amino acid long repeats, which is characteristic of toxins produced by C. diff (TcdA and TcdB). For example, CROP is generally regarded as a C-terminal receptor-binding domain of C. diff toxin to target the carbohydrate on the cells.
As shown in
Fabrication of step-by-step deposition on cores, for example natural spores, can be implemented to produce the functionalized microrobot. Functionalized microrobots can be prepared by initially depositing magnetic coatings onto pretreated bio-templates, next being functionalized with self-assembled monolayers and finally encapsulating with functionalized fluorescent probes. As used herein the terms layer and coating refer to one or more volumes of a substance with a thickness and an area on a least a portion of a surface of a body or another layer or coating. The magnetic coating can enable actuation and navigation of the microrobots. Further functionalization with self-assembled monolayers can further attach detection probes or other structures. As shown in
In embodiments, various types of natural spores can be used as spore cores. Furthermore, in embodiments synthetic cores may be used. The disclosed deposition or encapsulation techniques can be applied to obtain microrobots with various structures and dimensions. For example, a Lycopodium spore or a G. lucidum spore may be used. Other examples can include the incorporation (e.g., deposition) of an intermediate magnetic layer, e.g., nickel or iron or their oxide nanoparticles. Other exemplary design considerations can include a detection probe layer with different targeting functionality. For example, exemplary implementations that encapsulates microrobot with PAPA or related functional groups can achieve the targeting towards bacteria endotoxin. The exemplary design of the microrobot having a three-layer architecture can endow porous cores to multifunctionality, making the microrobots to detect the target molecules in a fluid.
An example of a fabrication process for a functionalized microrobot is described below. As noted herein, other steps and or materials may be used to fabricate a microrobot according to the present technology. The example fabrication process comprises taking the oligosaccharide-functionalized G. lucidum spore-based microrobot as an example. Firstly, G. lucidum spores are firstly pretreated to remove the impurities on the exine and internal core substances by sequentially ultrasonic treatment in 200 mL of absolute ethanol for 30 min, 200 mL of deionized water for 10 min, and washing with DIW several times for freezing dry. Then, spores are dispersed into 60 mL deionized water under the assist of ultrasonication and stirred, for example for 5 min, to form a brown suspension of spores dispersed in the deionized water. FeSO4 is added to the above suspension and then stirred, for example for 20 mins. Through dropping 20 mL ammonia (25%-27 wt. %) within 10 mins, followed by sealing and further stirring for 2 h, the brownish black spore@Fe3O4 precipitation can be collected with a magnet. The collected precipitation can be washed with ethanol and deionized water several times and freeze-dried. After being freeze-dried to remove the water content, the brownish black samples can be dispersed into 200 mL of ethanol and stirred for 10 mins to form a homogenous suspension, followed by the addition of 0.2 mmol of 3-mercaptopropionic acid (MPA). The mixed suspension can be stirred for 10 mins and stayed at room temperature for 24 h. After being collected with a magnet, the carboxyl functionalized magnetic spores can be washed with ethanol, for example three times, to remove residual MPA, and then freeze-dried for the next preparation. After being freeze-dried to remove the ethanol content, 50 mg of functionalized magnetic spores can be dispersed into 60 mL of deionized water. Then, 0.5 mmol EDC and 0.5 mmol NHS can be added and stirred for 2 h to activate the carboxyl groups on the samples. After functionalized fluorescent carbon dots obtained by a facile hydrothermal treatment of 0.16 g of aspartic acid, 0.16 g of glucose and 0.16 g of p-phenylenediamine are added the mixed suspension and allowed to react at room temperature for 24 h under gentle stirring. The oligosaccharide-functionalized G. lucidum spore-based microrobot are obtained by using EDC/NHS coupling chemistry and collected by a magnet, washed with ethanol and deionized water several times and freezing-dried for further use. The example detailed fabrication described here also can be extended and applicable to the preparation of other functionalized microrobot, e.g., PAPA, aptamer, etc.
The prepared functionalized microrobot (e.g., oligosaccharide-functionalized microrobot or other attached ligands modified ones) is a device that is magnetically propelled in a fluid. For example,
The functionalized microstructure can be observed and tracked using for example a light field. The light field emits an excitation beam corresponding to the excitation wavelength of the functionalized microrobots. For example, green light excitation (excitation filter: 537-552 nm) may be used in a fluorescent inverted microscopy due to red fluorescent emission of the functionalized microrobots, as shown in
In embodiments, the strength of magnetic field generator can be adjusted from 0 mT to 30 mT. The higher the strength of magnetic field is, the more efficient the propulsion is. However, high strength of the magnetic field is limited by the distance between the microrobots and coils and the current through coils which produce lager Joule heat. In embodiments, microrobots may be configured to be used in higher viscosity fluids or in weaker magnetic fields by increasing the magnetization strength of the microrobots. In embodiments, the rotating magnetic field operated at about 4 Hz.
In embodiments, microrobots may have locomotion caused by the magnetic field in three motion modes, spinning, rotation-translation, and tumble, as illustrated in
In view of excellent magnetically propelled ability and fluorescent response capability, the functionalized microrobots have been implemented for detection of the toxins, e.g., based on the selective and specific binding ability of functionalized microrobot. The microrobots can be encapsulated with carbon dots functionalized with targeting ligands (e.g., oligosaccharide or its specific groups) for highly specific toxin recognition. The microrobots can provide sufficient propulsive force for the efficient detection of target molecules in fluids, e.g., biological samples and complex clinical stool supernatant fluids. Microrobots can selectively detect bacteria toxins with simple pre-processing (including diluting and centrifugation) fluid samples and short detection time, e.g., simple dissolution of tested specimen and collection of supernatant as well as fast recognition within tens of minutes. The disclosed technology can also detect or sense other target molecules, for example toxins, chemical threats or biological molecules. For example, the oligosaccharide-functionalized G. lucidum spore-based microrobots can detect the toxins released from C. diff in biological samples. Time lapse images of such microrobots magnetically actuated in the supernatant containing bacteria toxins at a certain concentration are illustrated in
The disclosed microrobots include automated detection properties enabling continuous dynamic detection in fluids, including viscous fluids, e.g., bacteria culture media and clinical stool supernatant. The disclosed microrobots can have different targeting ability, e.g., by controlling ligand molecules, which can be implemented to detect other target molecules in the tested samples or to detect multiple target molecules. The disclosed microrobots can be employed in a rotating magnetic field, which can rapidly recognize the presence of toxin, e.g., C. diff toxins, within certain time interval in automated and continuous motion, in clinical pre-treated samples, e.g., stool.
In another aspect of the present technology, disclosed is a detecting system for a target molecule, for example bacteria toxin in a fluid, based on functionalized microrobots and automated fluorescent recognition and detection concepts. The disclosed system comprises a functionalized microrobot generating the sensing response to external stimulus with continuous movement and a motion control system applying the propulsion force and navigation to control the functionalized microrobot in manual and automated mode. The motion control system consists of a magnetic field generator, a controller box and a motorized sample platform. The magnetic field generator provides a rotating magnetic field to achieve the actuated motion of the microrobots within a test sample. The magnetic field generator can include an electromagnetic coil system and/or a rotating magnet. Further, in embodiments, other systems can be used to produce a rotating magnetic field, e.g., commercial Minimag and self-developed Magdisk. The control box includes a processor, storages, and a series of chipcards to deliver the executing command to the generator. The motorized sample platform is equipped for initial optimized recognition and the following detection in automated operation mode. The motion control system is coupled to an imaging device. The imaging device can include for example an inverted fluorescent microscope or a fluorescent multi-reader for the observation of fluorescent response and the evaluation of detection results. Through the feedback of observation results, the fully automated detection can be achieved by the as-formed whole loop system based on optimized recognition and automated detection algorithms. The system can be directly applied to detect the presence of the target molecules.
Examples of motion control system will be disclosed in the accompanying drawings and described in detail in the following.
The controller box 1320 includes a hardware system and a software system. The hardware includes a series of controller hardware 1321 executing the instruction set from software and a computer 1322 equipped with a sensor card for installing the software. Users can modify the parameters (direction angle, pitch angle, frequency and field strength) of the desired magnetic field via a user interface, e.g. a display, a keyboard and a mouse. In embodiments, the direction angle, pitch angle, frequency and field strength are modifiable to control the motion direction and speed of microrobots. For example, the hardware system of Magdisk consists of five servo amplifiers, two power supplies (36V, 9.7 A) and a digital-analog converter (DAC). The amplifiers are used to convert the voltage signal generated from the sensor card to current signal for the magnetic field generator. For examples, the servo amplifiers used in Magdisk are Maxon Motor 409510, which can provide of 5 A continuous current and 15 A peak current and be responsible for one electromagnetic coil so that the current in each coil can be controlled independently. The DAC is used as a gateway to convert digital signals from the sensor card to analog signals and delivery them to the amplifiers. The sensor card is generally equipped in the computer with the installation of magnetic field controlling program. For example, a Sensoray card 826 is used in the hardware of Magdisk to generate voltage signals according to the instructions from a self-developed Lab View-based magnetic field controlling program.
The software system includes a control scheme and a related executing program.
The related executing program includes two aspects. One is the auto-recognition program-based algorithm as shown in
A second aspect is an auto-tracking program for automation based on an algorithm as shown in
where Ki (i=1, 2) are positive control gains tuned by discrete-time simulations with the real control frequency, and sat(a, b) is a saturation function defined as:
At the same time, an extended state observer (ESO) provides feedback to the real motion state for calibrating the control motion, which conforms to the following equation. ESO not only estimates the motion states of the microrobots, but also to evaluate the generalized disturbances for compensation. The precision of final trajectory tracking is around 3 micrometers.
A motorized sample platform 1323 is connected to the motion control system for initial optimal recognition and the following automated detection. As shown in
When the above disclosed parts are integrated, the formed whole system can detect the presence of bacteria toxin in a practical specimen with the inverted fluorescent microscope or a fluorescent multi-reader. For example,