Patent Application
20180072944
Fluorescent probes selectively chelating Sn2+.
Stannous (Sn2+) is added to toothpaste to prevent dental plaque and oral disease. Sn2+ is found to effectively inhibit certain bacteria that can lead to tooth decay in human interproximal dental plaque. More recently, there has been increasing interest in the biological roles of Sn2+ because tin is an essential trace mineral for humans and is found in the greatest amount in the adrenal gland, liver, brain, spleen and thyroid gland. There is some evidence that tin is involved in growth factors and cancer prevention. Deficiency of tin may result in poor growth and hearing loss, but excess tin accumulation can negatively affect respiratory and digestive systems. However, studies of the physiological role and bacteriostatic mechanism of tin ion are restricted by the lack of versatile Sn2+ detection methods applicable to living cells—either eukaryotic or prokaryotic.
There is a need for chemical probe that is highly selective for Sn2+ in the presence of various metal ions and will exhibit high fluorescence upon Sn2+ chelation. There is a further need for such probe for use in living cells. There is yet a further need for a probe that minimizes background noise while providing high fluoresce intensity in living cells consistent where Sn2+ is found in the cell.
It is an advantage to have a probe that works well in pH conditions in an organelle that plays a role in Sn2+ accumulation in the cell.
It is a further advantage to have a probe that is relatively easy and simple to synthesize.
It is an advantage to have a probe that is less toxic, or at least minimizes toxicity, to biological cells so that experiments with living cells may be conducted.
The present invention address this need by the surprising discovery of a Sn2+ fluorescent probe containing rhodamine B derivative moiety as fluorophore, linked via amide moiety to a carbazate group. The use of this class of probe compounds is demonstrated as an imaging probe for monitoring Sn2+ in living cells to study the physiological function of Sn2+ in biological systems. This class of compounds is particularly useful given the additional surprising discovery that lysosomes appear to be an organelle where Sn concentrations are found. And given the rather acidic microenvironment of this organelle, the probes of the present invention exhibit high fluorescent intensity and yet minimizes background noise, compared to other probes that are otherwise subject to low pH induced fluoresce. In other words, a comparative probe, given the acidity of the lysosome, leads to undesirably induce fluorescence emission (thereby generating background noise).
A first aspect of the invention provides for a compound having the following Formula (I):
wherein R1 is unsubstituted, branched or unbranched, C1-C12 alkyl, alkenyl, or alkynyl; and wherein R2, R3, R4, R5, R6, and R7 are each independently a hydrogen or a hydrocarbyl; or an optical isomer, diastereomer or enantiomer for Formula (I), or a salt thereof.
In one embodiment, R1 is unsubstituted, branched or unbranched, C1-C10 alkyl, preferably C1-C8 alkyl. In another embodiment, R1 is selected from the group consisting of methyl, ethyl, propyl, butyl, isobutyl, pentanyl, and hexanyl, preferably isobutyl.
In one embodiment, R2, R3, R4, R5, R6, and R7 are each independently selected from the group consisting of H, alkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, aryl, heteroalkyl, heteroalkenyl, heteroalkynyl, heterocycloalkyl, heterocycloalkenyl, heteroaryl, and wherein the aforementioned may be substituted or unsubstituted. In another embodiment, R2, R3, R4, R5, R6, and R7 are each independently selected from H, C1-C10 alkyl, alkenyl, or alkynyl, and wherein the aforementioned may be substituted or unsubstituted, preferably unsubstituted. In yet still another embodiment, R2 and R7 are hydrogen, and/or R3, R4, R5, and R6 are each independently selected from hydrogen, or C1 to C5 alkyl, branched or unbranched, preferably unsubstituted C1 to C5 alkyl. In yet still another embodiment, R3, R4, R5, and R6, are each independently selected from unsubstituted C1 to C3 alkyl.
Another aspect of the invention provides a compound of Formula (II):
wherein R1 is unsubstituted, branched or unbranched, C1-C12 alkyl or alkenyl; or an optical isomer, diastereomer or enantiomer for Formula (I), or a salt thereof. In one embodiment, R1 is an unsubstituted C1-C10 alkyl, preferably R1 is an unsubstituted, branched or unbranched, C1-C8 alkyl. In yet still another embodiment, R1 is selected from the group consisting of methyl, ethyl, propyl, butyl, isobutyl, pentanyl, and hexanyl, preferably isobutyl.
In another aspect of the invention, a compound according to Formula (I) or (II) is provided, wherein the compound is selected from the group consisting of:
In yet another embodiment, the compound is selected from: N-(3′,6′-bis(diethylamino)-3-oxospiro[isoindoline-1,9′-xanthen]-2-yl)propionamide; N-(3′,6′-bis(diethylamino)-3-oxospiro[isoindoline-1,9′-xanthen]-2-yl)butyramide; and N-(3′,6′-bis(diethylamino)-3-oxospiro[isoindoline-1,9′-xanthen]-2-yl)pentanamide.
Yet still another aspect of the invention provides for a method of detecting fluorescence in a biological cell comprising the steps: (a) incubating the biological cell with a compound described above (e.g., a compound of Formula (I) or Formula (II), or preferred or alternative compound embodiments within said Formulas (I) or (II)); (b) shining excitation light to the incubated cell, preferably wherein the shined light has wavelength of at least from 520 to 580 nm, alternatively at 560 nm; and (c) detecting light emission from the compound from 560 to 660 nm. In one embodiment, the method further comprises subjecting the biological cell to Sn2+, alternatively wherein the biological cell is selected from an oral epithelial cell or Streptococcus genus of bacterium, alternatively wherein the biological cell is any eukaryotic cell. In another embodiment, the light emission detection is at a lysosome organelle of eukaryotic cell. In yet still another embodiment, the method is conducted with at least one specific compound previously described above or herein.
For purposes of the present invention the term “hydrocarbyl” is defined herein as any organic unit or moiety which is comprised of carbon atoms and hydrogen atoms. Included within the term “hydrocarbyl” are heterocycles. Non-limiting examples of various unsubstituted non-heterocyclic hydrocarbyl units include pentyl, 3-ethyloctanyl, 1,3-dimethylphenyl, cyclohexyl, cis-3-hexyl, 7,7-dimethylbicyclo[2.2.1]-heptan-1-yl, and napth-2-yl. Included with the definition of “hydrocarbyl” are the aromatic (aryl) and non-aromatic carbocyclic rings. The term “heterocycle” includes both aromatic (heteroaryl) and non-aromatic heterocyclic rings.
The term “substituted” is used throughout the specification. The term “substituted” is defined herein as “encompassing moieties or units which can replace a hydrogen atom, two hydrogen atoms, or three hydrogen atoms of a hydrocarbyl moiety. Also substituted can include replacement of hydrogen atoms on two adjacent carbons to form a new moiety or unit.” For example, a substituted unit that requires a single hydrogen atom replacement includes halogen, hydroxyl, and the like. A two hydrogen atom replacement includes carbonyl, oximino, and the like. A two hydrogen atom replacement from adjacent carbon atoms includes epoxy, and the like. Three hydrogen replacement includes cyano, and the like. An epoxide unit is an example of a substituted unit which requires replacement of a hydrogen atom on adjacent carbons. The term “substituted” is used through the present specification to indicate that a hydrocarbyl moiety, inter alia, aromatic ring, alkyl chain, can have one or more of the hydrogen atoms replaced by a substituent. When a moiety is described a “substituted” any number of the hydrogen atoms may be replaced. For example, 4-hydroxyphenyl is a “substituted aromatic carbocyclic ring,” (N,N-dimethyl-5-amino)octanyl is a “substituted C8 alkyl unit, 3-guanidinopropyl is a “substituted C3 alkyl unit,” and 2-carboxypyridinyl is a “substituted heteroaryl unit”.
In one embodiment, wherein R2, R3, R4, R5, R6, and R7 are each independently selected from the group consisting of H, alkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, aryl, heteroalkyl, heteroalkenyl, heteroalkynyl, heterocycloalkyl, heterocycloalkenyl, heteroaryl, substituted, and wherein the aforementioned may be substituted or unsubstituted. These terms are well known in the art. For a detailed definition, see U.S. Pat. No. 6,919,346 B2 at column 2, line 61 to column 9, line 53, incorporated herein by reference.
Compound R2, an exemplary compound of the present invention, is rhodamine B derivative moiety linked via amide moiety to tert-butyl carbazate group. The synthesis path of this compound is provided.
The synthesis of Compound R2 is described. Unless otherwise noted, materials were obtained from commercial suppliers and were used without further purification. Rhodamine (95%) is obtained from Sinopharm Chemical Reagent Co., Ltd. (Shanghai). Other chemicals are provided from Shanghai No. 1 chemical reagent. Flash chromatography is carried out on silica gel (200-300 mesh). The 1H NMR (500 MHz) and 13C NMR (125 MHz) spectra is recorded on a Bruker DRX-500 spectrometer. Proton chemical shifts are reported in parts per million downfield from tetramethylsilane (TMS). HRMS is recorded on LTQ-Orbitrap mass spectrometer (ThermoFlsher, San Jose, Calif.). Melting points are determined on a hot-plate melting point apparatus XT4-100A and uncorrected. UV-Vis spectra are recorded on a Shimadzu UV-2250 spectrophotometer. Fluorescence spectra are recorded on an Edinburgh FLS-920 spectrophotometer. All pH measurements are made with a model Mettler-Toledo meter.
The synthesis of chemical intermediate M2 (of the schematic above) is described. Hydrazine monohydrate (5.2 g, 100.0 mmol) is stirred in 20 mL of isopropanol at 0° C. for 15 min, and treated dropwise with a solution of Boc2O (Di-tert-butyl dicarbonate)(10.0 g, 45.8 mmol) in 10 mL of isopropanol. The reaction turns cloudy upon addition and stirring is continued at room temperature for 20 min. The solvent is removed by rotary evaporation and the residue is dissolved in DCM (Dichloromethane) and dried over MgSO4. The DCM is removed by rotary evaporation and the remaining liquid is distilled under reduced pressure to obtain t-butyl carbazate (M2) as a white solid, 1H NMR (400 MHz, CDCl3) δ 6.42 (s, 1H), 3.60 (s, 2H), 1.37 (s, 9H).
Synthesis of chemical intermediate R4 of the above scheme is described. A solution of rhodamine B (442 mg, 1 mmol) in Cl2SO (10 mL) is kept at room temperature overnight. The reaction mixture is evaporated under vacuum and co-evaporated with anhydrous CH2Cl2 (3×15 mL) to give rhodamine B acid chloride (R4). The crude acid chloride is dissolved in anhydrous CH2Cl2 (10 mL) and added dropwise to a solution of Boc-NH—NH2 (132 mg, 1 mmol) and Et3N (200 mL, 2 mmol) in anhydrous CH2Cl2 (15 mL). The reaction mixture is kept at room temperature for 10 min. Evaporation of the solvent yielded a crude that is purified by column chromatography using petroleum ether/ethyl acetate (3/1, v/v) to give R2 as a white solid (0.26 g, 50% yield). 1H NMR (500 MHz, CDCl3) δ 7.96 (d, J=7.6 Hz, 1H), 7.57-7.44 (m, 2H), 7.16 (d, J=7.5 Hz, 1H), 6.52 (s, 2H), 6.38 (d, J=1.8 Hz, 2H), 6.28 (d, J=8.4 Hz, 2H), 3.34 (q, J=7.0 Hz, 8H), 1.61 (s, 4H), 1.26 (s, 9H), 1.16 (d, J=14.1 Hz, 12H). 13C NMR (125 MHz, CDCl3) δ 168.92, 153.56, 152.87, 148.92, 132.58, 131.45, 129.05, 128.32, 123.80, 123.09, 108.24, 105.41, 97.68, 59.49, 57.65, 54.48, 44.13, 39.49, 12.31. HRMS calc. for C33H41N4O4+ (M+H+): 557.3122, found: 557.3111.
Comparative compound R1, outside the scope of the present invention, is compared to inventive Compound R2. Compound R1 is: Spiro[1H-isoindole-1,9′-[9H]xanthen]-3(2H)-one, 2-[2-[bis(2-hydroxyethyl)amino]amino]ethyl]-3′,6′-bis(diethylamino), and has the CAS Registry Number of 1217892-36-8 (C34, H44, N4, O4). The structure of Compound R1 and its synthesis is provided herein:
The synthesis of comparative Compound R1 is described. Synthesis of intermediate R5 is described: Rhodamine B hydrochloride (5.0 g, 10.4 mmol) and ethylenediamine (12.5 g, 208.8 mmol) is dissolved in EtOH (50 mL) and refluxed for 12 h. Most of solvent is removed by evaporation, and the residue is dispersed in water with magnetic stirring. Then the pink precipitate appeared and is recovered by filtration, washed thoroughly with water. At last pink precipitate is washed with petroleum ether, and then dried in vacuum, yielding Compound R5 as a pink powder (3.6 g, 72% yield): 1H NMR (400 MHz, CDCl3) δ 7.91 (d, J=2.3 Hz, 1H), 7.45 (d, J=2.5 Hz, 2H), 7.14-7.05 (m, 1H), 6.44 (s, 1H), 6.42 (s, 1H), 6.37 (d, J=2.3 Hz, 2H), 6.28 (d, J=2.3 Hz, 1H), 6.26 (d, J=2.4 Hz, 1H), 3.33 (q, J=7.0 Hz, 9H), 3.19 (t, J=6.6 Hz, 2H), 2.40 (t, J=6.6 Hz, 2H), 1.62 (s, 5H), 1.16 (t, J=7.0 Hz, 13H). See Shiraishi, Y.; Miyamoto, R.; Zhang, X.; Hirai, T. Org. Lett. 2007, 9, 3921-3924.
Synthesis of R1 from R5 is described. Oxirane (0.44 g, 10.0 mmol) is added to a cooled (−5° C.) solution of R5 (0.48 g, 0.1 mmol) in dichloromethane (10 mL). The solution is stirred for 4 h at −5° C. and then overnight at room temperature before being concentrated under reduced pressure. The resulted mixture is purified by column chromatography using dichloromethane/methanol (10/1, v/v) to give Compound R1 as a white solid (0.2 g, 40% yield): 1H NMR (500 MHz, CDCl3) δ 7.91 (d, J=2.9 Hz, 1H), 7.46 (dd, J=5.5, 3.1 Hz, 2H), 7.13-7.06 (m, 1H), 6.46 (s, 1H), 6.44 (s, 1H), 6.39 (d, J=2.4 Hz, 2H), 6.30 (d, J=2.5 Hz, 1H), 6.28 (d, J=2.5 Hz, 1H), 3.54-3.45 (m, 4H), 3.34 (q, J=7.0 Hz, 9H), 3.22 (t, J=5.7 Hz, 2H), 2.55 (t, J=7.5 Hz, 4H), 2.23 (t, J=5.0 Hz, 2H), 1.89 (s, 2H), 1.17 (t, J=7.0 Hz, 13H). 13C NMR (125 MHz, CDCl3) δ 153.96, 150.99, 148.86, 133.12, 129.67, 129.32, 128.31, 124.24, 123.41, 107.85, 104.52, 97.76, 44.10, 27.81, 12.59. HRMS calc. for C34H45N4O4 (M+H+): 573.3435, found: 573.3463.
Many further derivations from this basic molecule of Compound R2 can be made by those skilled in the art consistent with Formulas (I) and (II) by using starting materials and intermediates that are known or commercially available or by further modifying these molecules by known methods. Non-limiting examples of these compounds within the scope of Formula (I) and/or Formula (II) including the following:
The procedure for metal ion sensing is described. Solutions of the metal ions (10.0 mM) are prepared in deionized water. A stock solutions of Compounds R1 and R2 (0.2 mM) are each prepared in ethanol and then diluted to 20 μM with ethanol-water (1:1, v/v, pH 7.04) for spectral measurement. For titration experiments, a 2.0 mL solution of Compounds R1 and R2 (20 μM) are filled in a respective quartz optical cell of 1 cm optical path length. Sn2+ stock solution is added into the quartz optical cell gradually by micro-pipette. Spectral data is recorded at 5 min after addition. In selectivity experiments, the test samples are prepared by placing appropriate amounts of metal ion stock into 2.0 mL solution of R1, R2 (20 μM). For fluorescence measurements, excitation is provided at 560 nm, while emission is collected from 565 to 700 nm.
pH titration of Compounds R1 and R2 is described. Stock solutions of Compounds R1 and R2 are respectively added to sodium phosphate buffers of various pH to a final concentration of 10 μM. The fluorescence emission spectra are recorded as a function of pH using λex at 560 nm. The titration curves are plotted by fluorescence emission intensities at 580 nm versus pH.
Cell culture preparation is described. The KB cell line was provided by of Biochemistry and Cell Biology (China). Cells are grown in MEM (Modified Eagle's Medium) supplemented with 10% FBS (Fetal Bovine serum) and 5% CO2 at 37° C. Cell (5×10−8 L−1) are plated on 18 nm glass coverslips and allowed to adhere for 24 hours. The Streptococcus mutans (ATCC® 700610™) is prepared by inoculating the single colony from the BHI (Brain-Heart Infusion) agar plate into 5 mL BHI broth and incubating at 37° C. for 48 h.
Fluorescence imaging is described. Confocal fluorescence imaging is performed with an OLYMPUS IX81 laser scanning microscope and a 60× oil immersion objective lens. The microscope is equipped with multiple visible laser lines (405, 488, 543 nm). Images are collected and processed with Olympus FV10-ASW software. For fluorescence imaging of intracellular Sn2+: 10 μM of Compound R1 or R2 in the culture media containing 0.2% (v/v) DMSO (Dimethyl sulfoxide) is added to the cells. The cells are incubated at 37° C. for 30 min, and washed with PBS three times to remove the excess probe and bathed in PBS (2 mL) before imaging. After washing with PBS (2 mL×3) to remove the excess probe, the cells are treated with 50 μM SnF2 for 30 min. Excitation of R1 or R2 loaded cells at 543 nm is carried out with a semiconductor laser, and emission is collected at 560-660 nm (single channel). Alternatively, 50 μM SnF2 in the culture media is added to the cells. The cells are incubated at 37° C. for 30 min, and washed with PBS three times to remove the excess SnF2. After washing with PBS (2 mL×3) to remove the excess SnF2, the cells are treated with 10 μM R1 or R2 separately for 30 min, and washed with PBS three times to remove the excess probe and bathed in PBS (2 mL) before imaging. Cell imaging is then carried out as the former.
Colocalization experiments are described. 50 μM SnF2 in the culture media is added to the cells. The cells are incubated at 37° C. for 30 min, and washed with PBS three times to remove the excess SnF2. After washing with PBS (2 mL×3) to remove the excess SnF2, the cells are treated with 10 μM of Compound R1 or R2 separately for 30 min, and washed with PBS three times to remove the excess probe and bathed in PBS (2 mL) before imaging. Cell imaging is then carried out as the former. After washing with PBS (2 mL×3) to remove the excess probes, the cells were treated with 1.0 μM LysoTracker® Green DND at 37° C. for 30 min. Cell imaging is then carried out as the former.
For fluorescence imaging of Sn2+ in bacteria is described. Freshly diluted Streptococcus mutans (ATCC® 700610™) is sub cultured in the presence of the 10 μM Compound R1 or R2, separately at 37° C. on a shaker bed at 400 rpm for 60 min. Then the bacteria are collected by centrifugation at 8,000 rpm for 2 min and rinsed with Saline (pH=7.0). The process is repeated three times before imaging. After washing with Saline (2 mL×3) to remove the excess probes, the bacteria is cultured in the presence of the 50 μM SnF2 at 37° C. on a shaker bed at 400 rpm for 60 min. Then the bacteria are collected by centrifugation at 8,000 rpm for 2 min and rinsed with Saline (pH=7.0). The process was repeated three times before imaging. The light source is at =543 nm provided excitation and emission are collected in the range=560-660 nm.
Metal ion response is described. Fluorescent ‘turn on’ probe is conducive for detection target. The solution of Compound R1 or R2 (20 μM) in ethanol-water (1:1, v/v, PH 7.04) is non-fluorescent. With addition of Sn2+ (0-20 eq), fluorescence at 580 nm is turned on and grown drastically with an excitation of 560 nm (
The impact of pH values on fluorescence is described. The pirolactam ring of the rhodamine derivatives will open in a certain pH range and indicates the fluorescence of rhodamine. It is therefore necessary to check the fluorescence properties of Compounds R1 and R2 in solutions with different pH values. Furthermore, in the cell, the acidity of different organelles may vary greatly. For example, the normal pH of lysosomes is 4.5-5.5, which may induce ring opening of R1 or R2. Considering the application of Sn2+ probe R1 and R2 intracellular or extracellular may be disturbed by the pH, the acid-base titration experiments are carried out by adjusting the pH with an aqueous solution of NaOH and HCl in Phosphate-Buffered Saline (“PBS”) (
Fluorescence imaging of intracellular Sn2+ is described. Sn2+ is usually added to toothpaste, so oral epithelial cells are most likely to come into contact with Sn2+. The KB cells are a good candidate for explored Sn2+ distribution in cell level by fluorescence imaging. Here the practical applicability of R1 and R2 as a Sn2+ probe in the fluorescence imaging of living KB cells is investigated. Firstly, the KB cells are separately stained with 10 μM of Compound R1 or R2 at 37° C. for 30 min. As determined by laser scanning confocal microscopy, R1 gave fluorescence emission in a site of KB cells without Sn2+ present (
Furthermore, when the cells are supplemented with Compound R1 or R2 in the PBS for 30 min at 37° C. and then incubated with 50 μM Sn2+ under the same conditions, inventive Compound R2 gave a significant fluorescence increasing from the certain intracellular region (
Turning to
In summary, the biological application of inventive Compound R2 is demonstrated by the imaging of Sn2+ in KB cells and Streptococcus mutans (ATCC® 700610™). Furthermore compound R2 as lysosomes tracker is demonstrated by the distribution of Sn2+ in cells and bacteria, which is helpful to research of pharmaceutical agents' delivery and antibacterial mechanism of Sn2+.
The dimensions and values disclosed herein are not to be understood as being strictly limited to the exact numerical values recited. Instead, unless otherwise specified, each such dimension is intended to mean both the recited value and a functionally equivalent range surrounding that value. For example, a dimension disclosed as “40 mm” is intended to mean “about 40 mm”.
Every document cited herein, including any cross referenced or related patent or application and any patent application or patent to which this application claims priority or benefit thereof, is hereby incorporated herein by reference in its entirety unless expressly excluded or otherwise limited. The citation of any document is not an admission that it is prior art with respect to any invention disclosed or claimed herein or that it alone, or in any combination with any other reference or references, teaches, suggests or discloses any such invention. Further, to the extent that any meaning or definition of a term in this document conflicts with any meaning or definition of the same term in a document incorporated by reference, the meaning or definition assigned to that term in this document shall govern.
While particular embodiments of the present invention have been illustrated and described, it would be obvious to those skilled in the art that various other changes and modifications can be made without departing from the spirit and scope of the invention. It is therefore intended to cover in the appended claims all such changes and modifications that are within the scope of this invention.
