Streptococcus pneumoniae gene sequence for DNA ligase

Information

  • Patent Grant
  • H2070
  • Patent Number
    H2,070
  • Date Filed
    Monday, December 8, 1997
    27 years ago
  • Date Issued
    Tuesday, July 1, 2003
    21 years ago
Abstract
The invention provides isolated nucleic acid compounds encoding a DNA ligase of Streptococcus pneumoniae. Also provided are vectors and transformed host cells for expressing the encoded protein, and a method for identifying compounds that bind and/or inhibit said protein.
Description




BACKGROUND OF THE INVENTION




This invention provides isolated DNA sequences, proteins encoded thereby, and methods of using said DNA and protein in a variety of applications.




Widespread antibiotic resistance in common pathogenic bacterial species has justifiably alarmed the medical and research communities. Frequently, resistant organisms are co-resistant to several antibacterial agents. Penicillin resistance in


Streptococcus pneumoniae


has been particularly problematic. This organism causes upper respiratory tract infections. Modification of a penicillin-binding protein (PBP) underlies resistance to penicillin in the majority of cases. Combating resistance to antibiotic agents will require research into the molecular biology of pathogenic organisms. The goal of such research will be to identify new antibacterial agents.




While researchers continue to develop antibiotics effective against a number of microorganisms,


Streptococcus pneumoniae


has been more refractory. In part, this is because


Streptococcus pneumoniae


is highly recombinogenic and readily takes up exogenous DNA from its surroundings. Thus, there is a need for new antibacterial compounds and new targets for antibacterial therapy in


Streptococcus pneumoniae.






BRIEF SUMMARY OF THE INVENTION




The present invention relates to an isolated gene and encoded protein from


S. pneumoniae.


The invention enables: (1) preparation of probes and primers for use in hybridizations and PCR amplifications, (2) production of proteins and RNAs encoded by said gene and related nucleic acids, and (3) methods to identify compounds that bind and/or inhibit said protein(s).




In one embodiment the present invention relates to an isolated nucleic acid molecule encoding a DNA ligase protein.




In another embodiment, the invention relates to a nucleic acid molecule comprising the nucleotide sequence identified as SEQ ID NO:1, SEQ ID NO:3, SEQ ID NO:4, or SEQ ID NO:5.




In another embodiment, the present invention relates to a nucleic acid that encodes SEQ ID NO:2.




In another embodiment the present invention relates to an isolated protein molecule, wherein said protein molecule comprises the sequence identified as SEQ ID NO:2.




In yet another embodiment, the present invention relates to a recombinant DNA vector that incorporates the Ligase gene (viz. “Lig”) in operable linkage to gene expression sequences enabling the gene to be transcribed and translated in a host cell.




In still another embodiment the present invention relates to host cells that have been transformed or transfected with the cloned Lig gene such that the Lig gene is expressed in the host cell.




This invention also provides a method of determining whether a nucleic acid sequence of the present invention, or fragment thereof, is present in a sample, comprising contacting the sample, under suitable hybridization conditions, with a nucleic acid probe of the present invention.




In a still further embodiment, the present invention relates to a method for identifying compounds that bind and/or inhibit the Lig protein.




DETAILED DESCRIPTION OF THE INVENTION




“ORF” (i.e. “open reading frame”) designates a region of genomic DNA beginning with a Met or other initiation codon and terminating with a translation stop codon, that potentially encodes a protein product. “Partial ORF” means a portion of an ORF as disclosed herein such that the initiation codon, the stop codon, or both are not disclosed.




“Consensus sequence” refers to an amino acid or nucleotide sequence that may suggest the biological function of a protein, DNA, or RNA molecule. Consensus sequences are identified by comparing proteins, RNAs, and gene homologues from different species.




The terms “cleavage” or “restriction” of DNA refers to the catalytic cleavage of the DNA with a restriction enzyme that acts only at certain sequences in the DNA (viz. sequence-specific endonucleases). The various restriction enzymes used herein are commercially available and their reaction conditions, cofactors, and other requirements are used in the manner well known to one of ordinary skill in the art. Appropriate buffers and substrate amounts for particular restriction enzymes are specified by the manufacturer or can readily be found in the literature.




“Essential genes” or “essential ORFs” or “essential proteins” refer to genomic information or the protein(s) or RNAs encoded thereby, that when disrupted by knockout mutation, or by other mutation, result in a loss of viability of cells harboring said mutation.




“Non-essential genes” or “non-essential ORFs” or “non-essential proteins” refer to genomic information or the protein(s) or RNAs encoded therefrom which when disrupted by knockout mutation, or other mutation, do not result in a loss of viability of cells harboring said mutation.




“Minimal gene set” refers to a genus comprising about 256 genes conserved among different bacteria such as


M. genitalium


and


H. influenzae.


The minimal gene set may be necessary and sufficient to sustain life. See e.g. A. Mushegian and E. Koonin, “A minimal gene set for cellular life derived by comparison of complete bacterial genomes” Proc. Nat. Acad. Sci. 93, 10268-273 (1996).




“Knockout mutant” or “knockout mutation” as used herein refers to an in vitro engineered disruption of a region of native chromosomal DNA, typically within a protein coding region, such that a foreign piece of DNA is inserted within the native sequence. A knockout mutation occurring in a protein coding region prevents expression of the wild-type protein. This usually leads to loss of the function provided by the protein. A “knockout cassette” refers to a fragment of native chromosomal DNA having cloned therein a foreign piece of DNA that may provide a selectable marker.




The term “plasmid” refers to an extrachromosomal genetic element. The starting plasmids herein are either commercially available, publicly available on an unrestricted basis, or can be constructed from available plasmids in accordance with published procedures. In addition, equivalent plasmids to those described are known in the art and will be apparent to the ordinarily skilled artisan.




“Recombinant DNA cloning vector” as used herein refers to any autonomously replicating agent, including, but not limited to, plasmids and phages, comprising a DNA molecule to which one or more additional DNA segments can or have been added.




The term “recombinant DNA expression vector” as used herein refers to any recombinant DNA cloning vector, for example a plasmid or phage, in which a promoter and other regulatory elements are present to enable transcription of the inserted DNA.




The term “vector” as used herein refers to a nucleic acid compound used for introducing exogenous DNA into host cells. A vector comprises a nucleotide sequence which may encode one or more protein molecules. Plasmids, cosmids, viruses, and bacteriophages, in the natural state or which have undergone recombinant engineering, are examples of commonly used vectors.




The terms “complementary” or “complementarity” as used herein refer to the capacity of purine and pyrimidine nucleotides to associate through hydrogen bonding to form double stranded nucleic acid molecules. The following base pairs are related by complementarity: guanine and cytosine; adenine and thymine; and adenine and uracil. As used herein, “complementary” applies to all base pairs comprising two single-stranded nucleic acid molecules. “Partially complementary” means one of two single-stranded nucleic acid molecules is shorter than the other, such that one of the molecules remains partially single-stranded.




“Oligonucleotide” refers to a short nucleotide chain comprising from about 2 to about 25 nucleotides.




“Isolated nucleic acid compound” refers to any RNA or DNA sequence, however constructed or synthesized, which is locationally distinct from its natural location.




A “primer” is a nucleic acid fragment which functions as an initiating substrate for enzymatic or synthetic elongation of, for example, a nucleic acid molecule.




The term “promoter” refers to a DNA sequence which directs transcription of DNA to RNA.




A “probe” as used herein is a labeled nucleic acid compound which can be used to hybridize with another nucleic acid compound.




The term “hybridization” or “hybridize” as used herein refers to the process by which a single-stranded nucleic acid molecule joins with a complementary strand through nucleotide base pairing.




“Substantially purified” as used herein means a specific isolated nucleic acid or protein, or fragment thereof, in which substantially all contaminants (i.e. substances that differ from said specific molecule) have been separated from said nucleic acid or protein. For example, a protein may, but not necessarily, be “substantially purified” by the IMAC method as described herein.




“Selective hybridization” refers to hybridization under conditions of high stringency. The degree of hybridization between nucleic acid molecules depends upon, for example, the degree of complementarity, the stringency of hybridization, and the length of hybridizing strands.




The term “stringency” relates to nucleic acid hybridization conditions. High stringency conditions disfavor non-homologous base pairing. Low stringency conditions have the opposite effect. Stringency may be altered, for example, by changes in temperature and salt concentration. Typical high stringency conditions comprise hybridizing at 50° C. to 65° C. in 5X SSPE and 50% formamide, and washing at 50° C. to 65° C. in 0.5X SSPE; typical low stringency conditions comprise hybridizing at 35° C. to 37° C. in 5X SSPE and 40% to 45% formamide and washing at 42° C. in 1X-2X SSPE.




“SSPE” denotes a hybridization and wash solution comprising sodium chloride, sodium phosphate, and EDTA, at pH 7.4. A 20X solution of SSPE is made by dissolving 174 g of NaCl, 27.6 g of NaH2PO4.H2O, and 7.4 g of EDTA in 800 ml of H2O. The pH is adjusted with NaOH and the volume brought to 1 liter.




“SSC” denotes a hybridization and wash solution comprising sodium chloride and sodium citrate at pH 7. A 20X solution of SSC is made by dissolving 175 g of NaCl and 88 g of sodium citrate in 800 ml of H2. The volume is brought to 1 liter after adjusting the pH with 10N NaOH.




DETAILED DESCRIPTION OF THE INVENTION




The Lig gene disclosed herein (SEQ ID NO:1) and related nucleic acids encode a DNA ligase from


S. pneumoniae


that is essential for viability (SEQ ID NO:2). This gene and protein are members of the minimal gene set. The proteins categorized as “minimal gene set” counterparts are homologous to a set of highly conserved proteins found in other bacteria. The minimal gene set proteins are thought to be essential for viability and are useful targets for the development of new antibacterial compounds.




In one embodiment, the proteins of this invention are purified, and used in a screen to identify compounds that bind and/or inhibit the activity of said proteins. A variety of suitable screens are contemplated for this purpose. For example, the protein(s) can be labeled by known techniques, such as radiolabeling or fluorescent tagging, or by labeling with biotin/avidin. Thereafter, binding of a test compound to a labeled protein can be determined by any suitable means, well known to the skilled artisan.




Skilled artisans will recognize that the DNA molecules of this invention, or fragments thereof, or complements thereof, can be generated by general cloning methods. PCR amplification using oligonucleotide primers targeted to any suitable region of SEQ ID NO:l, SEQ ID NO:4, or SEQ ID NO:5 is preferred. Methods for PCR amplification are widely known in the art. See e.g. PCR Protocols: A Guide to Method and Application, Ed. M. Innis et al., Academic Press (1990) or U.S. Pat. No. 4,889,818, which hereby is incorporated by reference. A PCR comprises DNA, suitable enzymes, primers, and buffers, and is conveniently carried out in a DNA Thermal Cycler (Perkin Elmer Cetus, Norwalk, Conn.). A positive PCR result is determined by, for example, detecting an appropriately-sized DNA fragment following agarose gel electrophoresis.




The DNAs of the present invention may also be produced using synthetic methods well known in the art. (See, e.g., E. L. Brown, R. Belagaje, M. J. Ryan, and H. G. Khorana, Methods in Enzymology, 68:109-151 (1979)). An apparatus such as the Applied Biosystems Model 380A or 380B DNA synthesizers (Applied Biosystems, Inc., 850 Lincoln Center Drive, Foster City, Calif. 94404) may be used to synthesize DNA. Synthetic methods rely upon phosphotriester chemistry [See, e.g., M. J. Gait, ed., Oligonucleotide Synthesis, A Practical Approach, (1984)], or phosphoramidite chemistry.




Protein Production Methods




The present invention relates further to substantially purified proteins encoded by the gene disclosed herein.




Skilled artisans will recognize that proteins can be synthesized by different methods, for example, chemical methods or recombinant methods, as described in U.S. Pat. No. 4,617,149, which hereby is incorporated by reference.




The principles of solid phase chemical synthesis of polypeptides are well known in the art and may be found in general texts relating to this area. See, e.g., H. Dugas and C. Penney, Bioorganic Chemistry (1981) Springer-Verlag, New York, 54-92. Peptides may be synthesized by solid-phase methodology utilizing an Applied Biosystems 430A peptide synthesizer (Applied Biosystems, Foster City, Calif.) and synthesis cycles supplied by Applied Biosystems. Protected amino acids, such as t-butoxycarbonyl-protected amino acids, and other reagents are commercially available from many chemical supply houses.




The proteins of the present invention can also be made by recombinant DNA methods. Recombinant methods are preferred if a high yield is desired. Recombinant methods involve expressing the cloned gene in a suitable host cell. The gene is introduced into the host cell by any suitable means, well known to those skilled in the art. While chromosomal integration of the cloned gene is within the scope of the present invention, it is preferred that the cloned gene be maintained extra-chromosomally, as part of a vector in which the gene is in operable-linkage to a promoter.




Recombinant methods can also be used to overproduce a membrane-bound or membrane-associated protein. In some cases, membranes prepared from recombinant cells expressing such proteins provide an enriched source of the protein.




Expressing Recombinant Proteins in Procaryotic and Eucaryotic Host Cells




Procaryotes are generally used for cloning DNA sequences and for constructing vectors. For example, the


Escherichia coli


K12 strain 294 (ATCC No. 31446) is particularly useful for expression of foreign proteins. Other strains of


E. coli,


bacilli such as


Bacillus subtilis


, enterobacteriaceae such as


Salmonella typhimurium


or


Serratia marcescans


, various Pseudomonas species may also be employed as host cells in cloning and expressing the recombinant proteins of this invention. Also contemplated are various strains of Streptococcus and Streptocmyces.




For effective recombinant protein production, a gene must be linked to a promoter sequence. Suitable bacterial promoters include b -lactamase [e.g. vector pGX2907, ATCC 39344, contains a replicon and b -lactamase gene], lactose systems [Chang et al., Nature (London), 275:615 (1978); Goeddel et al., Nature (London), 281:544 (1979)], alkaline phosphatase, and the tryptophan (trp) promoter system [vector pATH1 (ATCC 37695)] designed for the expression of a trpE fusion protein. Hybrid promoters such as the tac promoter (isolatable from plasmid pDR540, ATCC-37282) are also suitable. Promoters for use in bacterial systems also will contain a Shine-Dalgarno sequence, operably linked to the DNA encoding the desired polypeptides. These examples are illustrative rather than limiting.




A variety of mammalian cells and yeasts are also suitable hosts. The yeast


Saccharomyces cerevisiae


is commonly used. Other yeasts, such as


Kluyveromyces lactis


, are also suitable. For expression of recombinant genes in Saccharomyces, the plasmid YRp7 (ATCC-40053), for example, may be used. See, e.g., L. Stinchcomb, et al., Nature, 282:39 (1979); J. Kingsman et al., Gene, 7:141 (1979); S. Tschemper et al., Gene, 10:157 (1980). Plasmid YRp7 contains the TRP1 gene, a selectable marker for a trpl mutant.




Purification of Recombinantly-Produced Protein




An expression vector carrying a nucleic acid or gene of the present invention is transformed or transfected into a suitable host cell using standard methods. Cells that contain the vector are propagated under conditions suitable for expression of a recombinant protein. For example, if the gene is under the control of an inducible promoter, then suitable growth conditions would incorporate the appropriate inducer. The recombinantly-produced protein may be purified from cellular extracts of transformed cells by any suitable means.




In a preferred process for protein purification a gene is modified at the 5′ end, or at some other position, such that the encoded protein incorporates several histidine residues (viz. “histidine tag”). This “histidine tag” enables “immobilized metal ion affinity chromatography” (IMAC), a single-step protein purification method described in U.S. Pat. No. 4,569,794, which hereby is incorporated by reference. The IMAC method enables isolation of substantially pure protein starting from a crude cellular extract.




As skilled artisans will recognize, owing to the degeneracy of the code, the proteins of the invention can be encoded by a large genus of different nucleic acid sequences. This invention further comprises said genus.




The ribonucleic acid compounds of the invention may be prepared using the polynucleotide synthetic methods discussed supra, or they may be prepared enzymatically using RNA polymerase to transcribe a DNA template.




The most preferred systems for preparing the ribonucleic acids of the present invention employ the RNA polymerase from the bacteriophage T7 or the bacteriophage SP6. These RNA polymerases are highly specific, requiring the insertion of bacteriophage-specific sequences at the 5′ end of a template. See, J. Sambrook, et al., supra, at 18.82-18.84.




This invention also provides nucleic acids that are complementary to the sequences disclosed herein.




The present invention also provides probes and primers, useful for a variety of molecular biology techniques including, for example, hybridization screens of genomic or subgenomic libraries, or detection and quantification of MRNA species as a means to analyze gene expression. A nucleic acid compound is provided comprising any of the sequences disclosed herein, or a complementary sequence thereof, or a fragment thereof, which is at least 15 base pairs in length, and which will hybridize selectively to


Streptococcus pneumoniae


DNA or mRNA. Preferably, the 15 or more base pair compound is DNA. A probe or primer length of at least 15 base pairs is dictated by theoretical and practical considerations. See e.g. B. Wallace and G. Miyada, “Oligonucleotide Probes for the Screening of Recombinant DNA Libraries,” In Methods in Enzymology, Vol. 152, 432-442, Academic Press (1987).




The probes and primers of this invention can be prepared by methods well known to those skilled in the art (See e.g. Sambrook et al. supra). In a preferred embodiment the probes and primers are synthesized by the polymerase chain reaction (PCR).




The present invention also relates to recombinant DNA cloning vectors and expression vectors comprising the nucleic acids of the present invention. Preferred nucleic acid vectors are those that comprise DNA. The skilled artisan understands that choosing the most appropriate cloning vector or expression vector depends on the availability of restriction sites, the type of host cell into which the vector is to be transfected or transformed, the purpose of transfection or transformation (e.g., stable transformation as an extrachromosomal element, or integration into a host chromosome), the presence or absence of readily assayable or selectable markers (e.g., antibiotic resistance and metabolic markers of one type and another), and the number of gene copies desired in the host cell.




Suitable vectors comprise RNA viruses, DNA viruses, lytic bacteriophages, lysogenic bacteriophages, stable bacteriophages, plasmids, viroids, and the like. The most preferred vectors are plasmids.




Host cells harboring the nucleic acids disclosed herein are also provided by the present invention. A preferred host is E. coli transfected or transformed with a vector comprising a nucleic acid of the present invention.




The invention also provides a host cell capable of expressing a gene described herein, said method comprising transforming or otherwise introducing into a host cell a recombinant DNA vector comprising an isolated DNA sequence that encodes said gene. The preferred host cell is any strain of E. coli that can accommodate high level expression of an exogenously introduced gene. Transformed host cells are cultured under conditions well known to skilled artisans, such that said gene is expressed, thereby producing the encoded protein in the recombinant host cell.




To discover compounds having antibacterial activity, one can look for agents that inhibit cell growth and/or viability by, for example, inhibiting enzymes required for cell wall biosynthesis, and/or by identifying agents that interact with membrane proteins. A method for identifying such compounds comprises contacting a suitable protein or membrane preparation with a test compound and monitoring by any suitable means an interaction and/or inhibition of a protein of this invention.




For example, the instant invention provides a screen for compounds that interact with the proteins of the invention, said screen comprising:




a) preparing a protein, or membranes enriched in a protein;




b) exposing the protein or membranes to a test compound; and




c) detecting an interaction of a protein with said compound by any suitable means.




The screening method of this invention may be adapted to automated procedures such as a PANDEX® (Baxter-Dade Diagnostics) system, allowing for efficient high-volume screening of compounds.




In a typical screen, a protein is prepared as described herein, preferably using recombinant DNA technology. A test compound is introduced into a reaction vessel containing said protein. The reaction/interaction of said protein and said compound is monitored by any suitable means. In a preferred method, a radioactively-labeled or chemically-labeled compound or protein is used. A specific association between the test compound and protein is monitored by any suitable means.




In such a screening protocol Lig is prepared as described herein, preferably using recombinant DNA technology. A test compound is introduced into a reaction vessel containing the Lig protein or fragment thereof. Binding of Lig by a test compound is determined by any suitable means. For example, in one method radioactively-labeled or chemically-labeled test compound may be used. Binding of the protein by the compound is assessed, for example, by quantifying bound label versus unbound label using any suitable method. Binding of a test compound may also be carried out by a method disclosed in U.S. Pat. No. 5,585,277, which hereby is incorporated by reference. In this method, binding of a test compound to a protein is assessed by monitoring the ratio of folded protein to unfolded protein, for example by monitoring sensitivity of said protein to a protease, or amenability to binding of said protein by a specific antibody against the folded state of the protein.




The foregoing screening methods are useful for identifying a ligand of a Lig protein, perhaps as a lead to a pharmaceutical compound for modulating the state of differentiation of an appropriate tissue. A ligand that binds Lig, or related fragment thereof, is identified, for example, by combining a test ligand with Lig under conditions that cause the protein to exist in a ratio of folded to unfolded states. If the test ligand binds the folded state of the protein, the relative amount of folded protein will be higher than in the case of a test ligand that does not bind the protein. The ratio of protein in the folded versus unfolded state is easily determinable by, for example, susceptibility to digestion by a protease, or binding to a specific antibody, or binding to chaperonin protein, or binding to any suitable surface.











The following examples more fully describe the present invention. Those skilled in the art will recognize that the particular reagents, equipment, and procedures described are merely illustrative and are not intended to limit the present invention in any manner.




EXAMPLE 1




Production of a Vector for Expressing


S. pneumoniae


Lig in a Host Cell




An expression vector suitable for expressing is. pneumoniae Lig in a variety of procaryotic host cells, such as


E. coli,


is easily made. The vector contains an origin of replication (Ori), an ampicillin resistance gene (Amp) useful for selecting cells which have incorporated the vector following a tranformation procedure, and further comprises the T7 promoter and T7 terminator sequences in operable linkage to the Lig coding region. Plasmid pET11A (obtained from Novogen, Madison, Wis.) is a suitable parent plasmid. pET11A is linearized by restriction with endonucleases NdeI and BamHI. Linearized pET11A is ligated to a DNA fragment bearing NdeI and BamHI sticky ends and comprising the coding region of the


S. pneumoniae


Lig (SEQ ID NO:1). The coding region for Lig is easily produced by PCR technology using suitably designed primers to the ends of the coding region specified in SEQ ID NO:1.




The Lig gene used in this construction is slightly modified at the 5′ end (amino terminus of encoded protein) in order to simplify purification of the encoded protein product. For this purpose, an oligonucleotide encoding 8 histidine residues is inserted after the ATG start codon. Placement of the histidine residues at the amino terminus of the encoded protein serves to enable the IMAC one-step protein purification procedure.




EXAMPLE 2




Recombinant Expression and Purification of a Protein Encoded by


S. pneumoniae


Lig




An expression vector that carries Lig from the


S. pneumoniae


genome as disclosed herein and which Lig is operably-linked to an expression promoter is transformed into


E. coli


BL21 (DE3)(hsdS gal lcIts857 ind1Sam7nin5lacUV5-T7gene 1) using standard methods (see Example 4). Transformants, selected for resistance to ampicillin, are chosen at random and tested for the presence of the vector by agarose gel electrophoresis using quick plasmid preparations. Colonies which contain the vector are grown in L broth and the protein product encoded by the vector-borne ORF is purified by immobilized metal ion affinity chromatography (IMAC), essentially as described in U.S. Pat. No. 4,569,794.




Briefly, the IMAC column is prepared as follows. A metal-free chelating resin (e.g. Sepharose 6B IDA, Pharmacia) is washed in distilled water to remove preservative substances and infused with a suitable metal ion [e.g. Ni(II), Co(II), or Cu(II)] by adding a 50mM metal chloride or metal sulfate aqueous solution until about 75% of the interstitial spaces of the resin are saturated with colored metal ion. The column is then ready to receive a crude cellular extract containing the recombinant protein product.




After removing unbound proteins and other materials by washing the column with any suitable buffer, pH 7.5, the bound protein is eluted in any suitable buffer at pH 4.3, or preferably with an imidizole-containing buffer at pH 7.5.







5





1959 base pairs


nucleic acid


single


linear




DNA (genomic)



NO


NO



CDS


1..1959




1
ATG AAT AAA AGA ATG AAT GAG TTA GTC GCT TTG CTC AAT CGC TAT GCG 48
Met Asn Lys Arg Met Asn Glu Leu Val Ala Leu Leu Asn Arg Tyr Ala
1 5 10 15
ACT GAG TAC TAT ACC AGC GAT AAT CCC TCG GTT TCA GAC AGT GAG TAT 96
Thr Glu Tyr Tyr Thr Ser Asp Asn Pro Ser Val Ser Asp Ser Glu Tyr
20 25 30
GAC CGC CTT TAC CGT GAG TTG GTC GAG TTA GAA ACT GCT TAT CCA GAG 144
Asp Arg Leu Tyr Arg Glu Leu Val Glu Leu Glu Thr Ala Tyr Pro Glu
35 40 45
CAA GTG CTA GCA GAC AGT CCG ACT CAT CGT GTT GGT GGC AAG GTT TTA 192
Gln Val Leu Ala Asp Ser Pro Thr His Arg Val Gly Gly Lys Val Leu
50 55 60
GAT GGT TTT GAA AAA TAC AGT CAT CAG TAT CCT CTT TAT AGT TTG CAG 240
Asp Gly Phe Glu Lys Tyr Ser His Gln Tyr Pro Leu Tyr Ser Leu Gln
65 70 75 80
GAT GCT TTT TCA CGT GAG GAG CTA GAT GCT TTT GAT GCG CGT GTT CGT 288
Asp Ala Phe Ser Arg Glu Glu Leu Asp Ala Phe Asp Ala Arg Val Arg
85 90 95
AAG GAA GTG GCT CAT CCG ACC TAT ATT TGT GAG CTG AAA ATC GAT GGC 336
Lys Glu Val Ala His Pro Thr Tyr Ile Cys Glu Leu Lys Ile Asp Gly
100 105 110
TTA TCT ATC TCG CTG ACT TAT GAA AAG GGG ATT TTG GTT GCT GGG GTA 384
Leu Ser Ile Ser Leu Thr Tyr Glu Lys Gly Ile Leu Val Ala Gly Val
115 120 125
ACA CGT GGA GAT GGT TCA ATT GGT GAA AAT ATC ACA GAA AAC CTC AAG 432
Thr Arg Gly Asp Gly Ser Ile Gly Glu Asn Ile Thr Glu Asn Leu Lys
130 135 140
CGT GTT AAG GAC ATC CCT TTG ACT TTG CCA GAA GAA CTA GAT ATC ACA 480
Arg Val Lys Asp Ile Pro Leu Thr Leu Pro Glu Glu Leu Asp Ile Thr
145 150 155 160
GTT CGT GGG GAA TGT TAC ATG CCA CGC GCT TCC TTT GAC CAA GTT AAC 528
Val Arg Gly Glu Cys Tyr Met Pro Arg Ala Ser Phe Asp Gln Val Asn
165 170 175
CAA GCG CGC CAA GAA AAT GGA GAG CCT GAA TTT GCT AAT CCT CGT AAT 576
Gln Ala Arg Gln Glu Asn Gly Glu Pro Glu Phe Ala Asn Pro Arg Asn
180 185 190
GCG GCA GCA GGA ACT CTG CGT CAG TTG GAT ACA GCA GTA GTT GCC AAG 624
Ala Ala Ala Gly Thr Leu Arg Gln Leu Asp Thr Ala Val Val Ala Lys
195 200 205
CGT AAT CTT GCA ACG TTT CTC TAT CAA GAA GCC AGC CCT TCA ACT CGT 672
Arg Asn Leu Ala Thr Phe Leu Tyr Gln Glu Ala Ser Pro Ser Thr Arg
210 215 220
GAT AGC CAA GAA AAG GGT TTG AAG TAC CTA GAA CAA CTA GGT TTT GTG 720
Asp Ser Gln Glu Lys Gly Leu Lys Tyr Leu Glu Gln Leu Gly Phe Val
225 230 235 240
GTC AAT CCT AAG CGA ATC TTG GCT GAA AAC ATA GAT GAA ATC TGG AAT 768
Val Asn Pro Lys Arg Ile Leu Ala Glu Asn Ile Asp Glu Ile Trp Asn
245 250 255
TTT ATC CAA GAA GTA GGA CAG GAA CGG GAA AAT CTG CCT TAC GAT ATT 816
Phe Ile Gln Glu Val Gly Gln Glu Arg Glu Asn Leu Pro Tyr Asp Ile
260 265 270
GAT GGA GTG GTA ATC AAG GTC AAC GAC CTA GCA AGT CAA GAA GAA CTT 864
Asp Gly Val Val Ile Lys Val Asn Asp Leu Ala Ser Gln Glu Glu Leu
275 280 285
GGT TTT ACC GTT AAG GCT CCA AAG TGG GCA GTA GCC TAC AAG TTC CCT 912
Gly Phe Thr Val Lys Ala Pro Lys Trp Ala Val Ala Tyr Lys Phe Pro
290 295 300
GCT GAA GAA AAA GAA GCT CAA CTC TTA TCA GTT GAC TGG ACA GTT GGC 960
Ala Glu Glu Lys Glu Ala Gln Leu Leu Ser Val Asp Trp Thr Val Gly
305 310 315 320
CGT ACC GGT GTT GTA ACT CCA ACT GCT AAT CTA ACA CCA GTA CAA CTT 1008
Arg Thr Gly Val Val Thr Pro Thr Ala Asn Leu Thr Pro Val Gln Leu
325 330 335
GCC GGT ACG ACT GTT AGC CGT GCG ACC CTG CAC AAT GTA GAT TAT ATT 1056
Ala Gly Thr Thr Val Ser Arg Ala Thr Leu His Asn Val Asp Tyr Ile
340 345 350
GCT GAA AAA GAT ATC CGA AAA GAC GAT ACG GTC ATT GTA TAT AAG GCT 1104
Ala Glu Lys Asp Ile Arg Lys Asp Asp Thr Val Ile Val Tyr Lys Ala
355 360 365
GGT GAC ATC ATC CCT GCC GTT TTA CGT GTG GTA GAG TCC AAA CGG GTT 1152
Gly Asp Ile Ile Pro Ala Val Leu Arg Val Val Glu Ser Lys Arg Val
370 375 380
TCT GAA GAA AAA CTA GAT ATC CCT ACA AAC TGT CCA AGT TGT AAC TCT 1200
Ser Glu Glu Lys Leu Asp Ile Pro Thr Asn Cys Pro Ser Cys Asn Ser
385 390 395 400
GAC TTG TTG CAC TTT GAA GAT GAA GTG GCC CTA CGT TGT ATC AAT CCG 1248
Asp Leu Leu His Phe Glu Asp Glu Val Ala Leu Arg Cys Ile Asn Pro
405 410 415
CGT TGC CCT GCT CAA ATC ATG GAA GGC TTG ATT CAC TTT GCT TCT CGT 1296
Arg Cys Pro Ala Gln Ile Met Glu Gly Leu Ile His Phe Ala Ser Arg
420 425 430
GAT GCT ATG AAT ATT ACA GGC CTT GGT CCA TCT ATT GTT GAG AAG CTT 1344
Asp Ala Met Asn Ile Thr Gly Leu Gly Pro Ser Ile Val Glu Lys Leu
435 440 445
TTT GCT GCT AAT TTA GTC AAG GAT GTG GCG GAT ATT TAT CGT TTG CAA 1392
Phe Ala Ala Asn Leu Val Lys Asp Val Ala Asp Ile Tyr Arg Leu Gln
450 455 460
GAA GAG GAT TTC CTC CTT TTA GAG GGG GTT AAG GAA AAG TCC GCT GCT 1440
Glu Glu Asp Phe Leu Leu Leu Glu Gly Val Lys Glu Lys Ser Ala Ala
465 470 475 480
AAA CTG TAT CAG GCT ATC CAA GCA TCA AAG GAA AAT TCT GCC GAG AAG 1488
Lys Leu Tyr Gln Ala Ile Gln Ala Ser Lys Glu Asn Ser Ala Glu Lys
485 490 495
CTC TTA TTT GGT TTG GGA ATT CGT CAT GTC GGA AGC AAG GCT AGT CAG 1536
Leu Leu Phe Gly Leu Gly Ile Arg His Val Gly Ser Lys Ala Ser Gln
500 505 510
CTT TTA CTT CAA TAT TTC CAT TCA ATT GAA AAT CTG TAT CAG GCA GAT 1584
Leu Leu Leu Gln Tyr Phe His Ser Ile Glu Asn Leu Tyr Gln Ala Asp
515 520 525
TCA GAG GAA GTG GCT AGT ATT GAA AGT CTA GGT GGC GTG ATT GCC AAA 1632
Ser Glu Glu Val Ala Ser Ile Glu Ser Leu Gly Gly Val Ile Ala Lys
530 535 540
AGT CTT CAG ACT TAT TTT GCG GCA GAA GGC TCT GAA ATT CTG CTC AGA 1680
Ser Leu Gln Thr Tyr Phe Ala Ala Glu Gly Ser Glu Ile Leu Leu Arg
545 550 555 560
GAA TTG AAA GAA ACT GGG GTC AAT CTG GAC TAT AAA GGA CAG ACG GTA 1728
Glu Leu Lys Glu Thr Gly Val Asn Leu Asp Tyr Lys Gly Gln Thr Val
565 570 575
GTA GCG GAT GCG GCC TTG TCA GGT TTG ACC GTG GTA TTG ACA GGA AAA 1776
Val Ala Asp Ala Ala Leu Ser Gly Leu Thr Val Val Leu Thr Gly Lys
580 585 590
TTG GAA CGA CTC AAG CGC TCA GAA GCT AAA AGT AAA CTC GAA AGT CTG 1824
Leu Glu Arg Leu Lys Arg Ser Glu Ala Lys Ser Lys Leu Glu Ser Leu
595 600 605
GGT GCC AAA GTG ACA GGT AGT GTT TCT AAA AAG ACC GAC CTC GTC GTG 1872
Gly Ala Lys Val Thr Gly Ser Val Ser Lys Lys Thr Asp Leu Val Val
610 615 620
GTA GGT GCA GAC GCT GGA AGT AAA CTG CAA AAA GCA CAA GAA CTT GGT 1920
Val Gly Ala Asp Ala Gly Ser Lys Leu Gln Lys Ala Gln Glu Leu Gly
625 630 635 640
ATC CAG GTC AGA GAT GAG GCA TGG CTA GAA AGT TTG TAA 1959
Ile Gln Val Arg Asp Glu Ala Trp Leu Glu Ser Leu *
645 650






652 amino acids


amino acid


linear




protein



2
Met Asn Lys Arg Met Asn Glu Leu Val Ala Leu Leu Asn Arg Tyr Ala
1 5 10 15
Thr Glu Tyr Tyr Thr Ser Asp Asn Pro Ser Val Ser Asp Ser Glu Tyr
20 25 30
Asp Arg Leu Tyr Arg Glu Leu Val Glu Leu Glu Thr Ala Tyr Pro Glu
35 40 45
Gln Val Leu Ala Asp Ser Pro Thr His Arg Val Gly Gly Lys Val Leu
50 55 60
Asp Gly Phe Glu Lys Tyr Ser His Gln Tyr Pro Leu Tyr Ser Leu Gln
65 70 75 80
Asp Ala Phe Ser Arg Glu Glu Leu Asp Ala Phe Asp Ala Arg Val Arg
85 90 95
Lys Glu Val Ala His Pro Thr Tyr Ile Cys Glu Leu Lys Ile Asp Gly
100 105 110
Leu Ser Ile Ser Leu Thr Tyr Glu Lys Gly Ile Leu Val Ala Gly Val
115 120 125
Thr Arg Gly Asp Gly Ser Ile Gly Glu Asn Ile Thr Glu Asn Leu Lys
130 135 140
Arg Val Lys Asp Ile Pro Leu Thr Leu Pro Glu Glu Leu Asp Ile Thr
145 150 155 160
Val Arg Gly Glu Cys Tyr Met Pro Arg Ala Ser Phe Asp Gln Val Asn
165 170 175
Gln Ala Arg Gln Glu Asn Gly Glu Pro Glu Phe Ala Asn Pro Arg Asn
180 185 190
Ala Ala Ala Gly Thr Leu Arg Gln Leu Asp Thr Ala Val Val Ala Lys
195 200 205
Arg Asn Leu Ala Thr Phe Leu Tyr Gln Glu Ala Ser Pro Ser Thr Arg
210 215 220
Asp Ser Gln Glu Lys Gly Leu Lys Tyr Leu Glu Gln Leu Gly Phe Val
225 230 235 240
Val Asn Pro Lys Arg Ile Leu Ala Glu Asn Ile Asp Glu Ile Trp Asn
245 250 255
Phe Ile Gln Glu Val Gly Gln Glu Arg Glu Asn Leu Pro Tyr Asp Ile
260 265 270
Asp Gly Val Val Ile Lys Val Asn Asp Leu Ala Ser Gln Glu Glu Leu
275 280 285
Gly Phe Thr Val Lys Ala Pro Lys Trp Ala Val Ala Tyr Lys Phe Pro
290 295 300
Ala Glu Glu Lys Glu Ala Gln Leu Leu Ser Val Asp Trp Thr Val Gly
305 310 315 320
Arg Thr Gly Val Val Thr Pro Thr Ala Asn Leu Thr Pro Val Gln Leu
325 330 335
Ala Gly Thr Thr Val Ser Arg Ala Thr Leu His Asn Val Asp Tyr Ile
340 345 350
Ala Glu Lys Asp Ile Arg Lys Asp Asp Thr Val Ile Val Tyr Lys Ala
355 360 365
Gly Asp Ile Ile Pro Ala Val Leu Arg Val Val Glu Ser Lys Arg Val
370 375 380
Ser Glu Glu Lys Leu Asp Ile Pro Thr Asn Cys Pro Ser Cys Asn Ser
385 390 395 400
Asp Leu Leu His Phe Glu Asp Glu Val Ala Leu Arg Cys Ile Asn Pro
405 410 415
Arg Cys Pro Ala Gln Ile Met Glu Gly Leu Ile His Phe Ala Ser Arg
420 425 430
Asp Ala Met Asn Ile Thr Gly Leu Gly Pro Ser Ile Val Glu Lys Leu
435 440 445
Phe Ala Ala Asn Leu Val Lys Asp Val Ala Asp Ile Tyr Arg Leu Gln
450 455 460
Glu Glu Asp Phe Leu Leu Leu Glu Gly Val Lys Glu Lys Ser Ala Ala
465 470 475 480
Lys Leu Tyr Gln Ala Ile Gln Ala Ser Lys Glu Asn Ser Ala Glu Lys
485 490 495
Leu Leu Phe Gly Leu Gly Ile Arg His Val Gly Ser Lys Ala Ser Gln
500 505 510
Leu Leu Leu Gln Tyr Phe His Ser Ile Glu Asn Leu Tyr Gln Ala Asp
515 520 525
Ser Glu Glu Val Ala Ser Ile Glu Ser Leu Gly Gly Val Ile Ala Lys
530 535 540
Ser Leu Gln Thr Tyr Phe Ala Ala Glu Gly Ser Glu Ile Leu Leu Arg
545 550 555 560
Glu Leu Lys Glu Thr Gly Val Asn Leu Asp Tyr Lys Gly Gln Thr Val
565 570 575
Val Ala Asp Ala Ala Leu Ser Gly Leu Thr Val Val Leu Thr Gly Lys
580 585 590
Leu Glu Arg Leu Lys Arg Ser Glu Ala Lys Ser Lys Leu Glu Ser Leu
595 600 605
Gly Ala Lys Val Thr Gly Ser Val Ser Lys Lys Thr Asp Leu Val Val
610 615 620
Val Gly Ala Asp Ala Gly Ser Lys Leu Gln Lys Ala Gln Glu Leu Gly
625 630 635 640
Ile Gln Val Arg Asp Glu Ala Trp Leu Glu Ser Leu
645 650






1959 base pairs


nucleic acid


single


linear




mRNA



NO


NO


3
AUGAAUAAAA GAAUGAAUGA GUUAGUCGCU UUGCUCAAUC GCUAUGCGAC UGAGUACUAU 60
ACCAGCGAUA AUCCCUCGGU UUCAGACAGU GAGUAUGACC GCCUUUACCG UGAGUUGGUC 120
GAGUUAGAAA CUGCUUAUCC AGAGCAAGUG CUAGCAGACA GUCCGACUCA UCGUGUUGGU 180
GGCAAGGUUU UAGAUGGUUU UGAAAAAUAC AGUCAUCAGU AUCCUCUUUA UAGUUUGCAG 240
GAUGCUUUUU CACGUGAGGA GCUAGAUGCU UUUGAUGCGC GUGUUCGUAA GGAAGUGGCU 300
CAUCCGACCU AUAUUUGUGA GCUGAAAAUC GAUGGCUUAU CUAUCUCGCU GACUUAUGAA 360
AAGGGGAUUU UGGUUGCUGG GGUAACACGU GGAGAUGGUU CAAUUGGUGA AAAUAUCACA 420
GAAAACCUCA AGCGUGUUAA GGACAUCCCU UUGACUUUGC CAGAAGAACU AGAUAUCACA 480
GUUCGUGGGG AAUGUUACAU GCCACGCGCU UCCUUUGACC AAGUUAACCA AGCGCGCCAA 540
GAAAAUGGAG AGCCUGAAUU UGCUAAUCCU CGUAAUGCGG CAGCAGGAAC UCUGCGUCAG 600
UUGGAUACAG CAGUAGUUGC CAAGCGUAAU CUUGCAACGU UUCUCUAUCA AGAAGCCAGC 660
CCUUCAACUC GUGAUAGCCA AGAAAAGGGU UUGAAGUACC UAGAACAACU AGGUUUUGUG 720
GUCAAUCCUA AGCGAAUCUU GGCUGAAAAC AUAGAUGAAA UCUGGAAUUU UAUCCAAGAA 780
GUAGGACAGG AACGGGAAAA UCUGCCUUAC GAUAUUGAUG GAGUGGUAAU CAAGGUCAAC 840
GACCUAGCAA GUCAAGAAGA ACUUGGUUUU ACCGUUAAGG CUCCAAAGUG GGCAGUAGCC 900
UACAAGUUCC CUGCUGAAGA AAAAGAAGCU CAACUCUUAU CAGUUGACUG GACAGUUGGC 960
CGUACCGGUG UUGUAACUCC AACUGCUAAU CUAACACCAG UACAACUUGC CGGUACGACU 1020
GUUAGCCGUG CGACCCUGCA CAAUGUAGAU UAUAUUGCUG AAAAAGAUAU CCGAAAAGAC 1080
GAUACGGUCA UUGUAUAUAA GGCUGGUGAC AUCAUCCCUG CCGUUUUACG UGUGGUAGAG 1140
UCCAAACGGG UUUCUGAAGA AAAACUAGAU AUCCCUACAA ACUGUCCAAG UUGUAACUCU 1200
GACUUGUUGC ACUUUGAAGA UGAAGUGGCC CUACGUUGUA UCAAUCCGCG UUGCCCUGCU 1260
CAAAUCAUGG AAGGCUUGAU UCACUUUGCU UCUCGUGAUG CUAUGAAUAU UACAGGCCUU 1320
GGUCCAUCUA UUGUUGAGAA GCUUUUUGCU GCUAAUUUAG UCAAGGAUGU GGCGGAUAUU 1380
UAUCGUUUGC AAGAAGAGGA UUUCCUCCUU UUAGAGGGGG UUAAGGAAAA GUCCGCUGCU 1440
AAACUGUAUC AGGCUAUCCA AGCAUCAAAG GAAAAUUCUG CCGAGAAGCU CUUAUUUGGU 1500
UUGGGAAUUC GUCAUGUCGG AAGCAAGGCU AGUCAGCUUU UACUUCAAUA UUUCCAUUCA 1560
AUUGAAAAUC UGUAUCAGGC AGAUUCAGAG GAAGUGGCUA GUAUUGAAAG UCUAGGUGGC 1620
GUGAUUGCCA AAAGUCUUCA GACUUAUUUU GCGGCAGAAG GCUCUGAAAU UCUGCUCAGA 1680
GAAUUGAAAG AAACUGGGGU CAAUCUGGAC UAUAAAGGAC AGACGGUAGU AGCGGAUGCG 1740
GCCUUGUCAG GUUUGACCGU GGUAUUGACA GGAAAAUUGG AACGACUCAA GCGCUCAGAA 1800
GCUAAAAGUA AACUCGAAAG UCUGGGUGCC AAAGUGACAG GUAGUGUUUC UAAAAAGACC 1860
GACCUCGUCG UGGUAGGUGC AGACGCUGGA AGUAAACUGC AAAAAGCACA AGAACUUGGU 1920
AUCCAGGUCA GAGAUGAGGC AUGGCUAGAA AGUUUGUAA 1959






1557 base pairs


nucleic acid


single


linear




DNA (genomic)



NO


NO


4
TTTCAGCTCA CAAATATAGG TCGGATGAGC CACTTCCTTA CGAACACGCG CATCAAAAGC 60
ATCTAGCTCC TCACGTGAAA AAGCATCCTG CAAACTATAA AGAGGATACT GATGACTGTA 120
TTTTTCAAAA CCATCTAAAA CCTTGCCACC AACACGATGA GTCGGACTGT CTGCTAGCAC 180
TTGCTCTGGA TAAGCAGTTT CTAACTCGAC CAACTCACGG TAAAGGCGGT CATACTCACT 240
GTCTGAAACC GAGGGATTAT CGCTGGTATA GTACTCAGTC GCATAGCGAT TGAGCAAAGC 300
GACTAACTCA TTCATTCTTT TATTCATAAG ACCATTTTAC CATAAAACAA GCCCTCCTCA 360
CAAACGAGAA GGGCGGAAAA AACACTTAGT TTGAAATTAT TTTTGAAACT CAAGCAACCT 420
TATATCAATT TTTCAAAATG AGTTCGAACA TAAATAAACG ATATACAAGA CAAGATGATA 480
ACACCACTTC CAATTATCAG GAAAGAAGAG AGATGTACAC TTGGCAAGAC TGTCATAAAT 540
CCTTTTGCAA TAGGCATAAA TAGAATAGCT AAGGTAAAAA TTGTACTCAG TACTCTTCCA 600
AGAAATTCGC TCTCAACCTT GGTTTGTACT TGAGTAAAAA AGTGAATATT AAAAATCGTC 660
ATAAACAATT CACAAACTAA ATTTCCAGAA AAGGAAAGAA AAGTTGGAAG TGGTAATCCC 720
ATCATAAAAA CTCCGACACC TGTCAAAGCC AGTAAAATCA AAAGATTATA AATATTAGCT 780
TTAATTTTAC TAGCTAGAAG AGCCCCAATG ATGGAACCAA TAGCCCCCAT AGTTAAAATA 840
CTTGCATAGG CTCCTTCTGA CCCGTAAAGC TGATTCGAAA AGGGAAGTAG AAATTCAAAA 900
GCTGCAAAAA AGAAATTAAC GCTGGAAGCT ACCAGCAAAA GGAAGAAAAT TTCTTGCTGA 960
TGCCAGATAT AGTGTAACCC ATCCTTGATA TCTACAAAAA TATCTCTCCC AGTAAAAGCC 1020
TTTTTCTCTT GAACTTTTGC TTCCTCTTTT GGAAGGAAAG CCACTAGAAC AAAAGCAATG 1080
AAAAAAGTCA GCGAGTCTAG CAGTAGCGTC ATATGGAGAC TTGCAAACTG TAAAACAAGG 1140
AAGGAAAGAA CAGGAGAGCT AACACCTACA ACCTGCAAAA CCAGCTCTAA GCGAGAATTA 1200
TAGATCACAA TCTCATTTTT CTCCACCACT TCAGTTATGA TAGCTTTATT GGCTGTGCGA 1260
GAAAAGGCAA AAGCAATAGC CTGCACAATG TTAGCAACAA TCAAAGCGCC AATCATCCAG 1320
CTATCATTCC TTATGAAAGA AATAGCCAGA CAAAGAATCC CACAAACAAG ATCTGCCGTC 1380
ATTAAAATCT TACGACGAGA AAAACGGTCT GAAATAACTC CGCCAAAGGG ATTGACGAGA 1440
ATAGATGTGA CGAGCTCAGA AATCTGATAC ATTCCTAAAA CTGTCTGTCC TATAGTCCCC 1500
ATAGAAGCCA ACCAGACACT ATTTCCATAA TCATAGAGCA TATTCCCATT TTATTGA 1557






658 base pairs


nucleic acid


single


linear




DNA (genomic)



NO


NO


5
CTTATTTGGT TTGGGAATTC GTCATGTCGG AAGCAAGGCT AGTCAGCTTT TACTTCAATA 60
TTTCCATTCA ATTGAAAATC TGTATCAGGC AGATTCAGAG GAAGTGGCTA GTATTGAAAG 120
TCTAGGTGGC GTGATTGCCA AAAGTCTTCA GACTTATTTT GCGGCAGAAG GCTCTGAAAT 180
TCTGCTCAGA GAATTGAAAG AAACTGGGGT CAATCTGGAC TATAAAGGAC AGACGGTAGT 240
AGCGGATGCG GCCTTGTCAG GTTTGACCGT GGTATTGACA GGAAAATTGG AACGACTCAA 300
GCGCTCAGAA GCTAAAAGTA AACTCGAAAG TCTGGGTGCC AAAGTGACAG GTAGTGTTTC 360
TAAAAAGACC GACCTCGTCG TGGTAGGTGC AGACGCTGGA AGTAAACTGC AAAAAGCACA 420
AGAACTTGGT ATCCAGGTCA GAGATGAGGC ATGGCTAGAA AGTTTGTAAT GGATCGTTTA 480
AAAACAGAGT TTAGAGAATA TGACTATGTC TGTTAATTGA GACGAGATTG ACAAAAATTT 540
ATTAGTGAAA TAGGAAACAA AGTAAAAAGG AAAAATAAAA AATGTATACT ACCCTATGCG 600
CATTCATTAC CATCGTAAGA ATGGAGAATA TGACCTTGCT CCTTTGTAAA AGTCAGGA 658







Claims
  • 1. An isolated nucleic acid fragment, wherein said fragment has a sequence selected from the group consisting of:(a) SEQ ID NO: 1; (b) SEQ ID NO: 3; (c) a nucleic acid fragment that encodes the same protein as depicted in SEQ ID NO:2; and (d) a nucleic acid fragment fully complementary to (a), (b), or (c).
  • 2. The isolated nucleic acid fragment of claim 1, wherein the sequence of said fragment is selected from the group consisting of SEQ ID NO: 1, a nucleic acid fragment that encodes the same protein as depicted in SEQ ID NO:2 , and a nucleic acid fragment fully complementary to either of the foregoing.
  • 3. The isolated nucleic acid fragment of claim 1, wherein the sequence of said fragment is selected from the group consisting of SEQ ID NO:3, a nucleic acid fragment that encodes the same protein as depicted in SEQ ID NO:2 , and a nucleic acid fragment fully complementary to either of the foregoing.
  • 4. An isolated nucleic acid fragment encoding a protein having the amino acid sequence that is SEQ ID NO:2.
  • 5. A vector comprising the isolated nucleic acid fragment of claim 4.
  • 6. The vector of claim 5, wherein said isolated nucleic acid fragment is SEQ ID NO:1, operably-linked to a promoter sequence from said vector.
  • 7. A recombinant host cell containing said vector of claim 6.
  • 8. A recombinant host cell containing said vector of claim 5.
  • 9. A method for constructing a recombinant host cell having the potential to express a protein having the amino acid sequence shown in SEQ ID NO:2, said method comprising introducing into said host cell by any suitable means said vector of claim 5.
  • 10. A method for producing a protein having the amino acid sequence of SEQ ID NO:2 in said recombinant host cell of claim 7, said method comprising culturing the recombinant host cell under conditions suitable for production of said protein.
  • 11. The method of claim 10, further comprising recovering said protein.
  • 12. An isolated nucleic acid fragment, wherein said fragment consists essentially of a sequence selected from the group consisting of:(a) SEQ ID NO: 1; (b) SEQ ID NO: 3; (c) a nucleic acid fragment that encodes the same protein as depicted in SEQ ID NO:2; and (d) a nucleic acid fragment fully complementary to (a), (b), or (c).
  • 13. The isolated nucleic acid fragment of claim 12, wherein the sequence of said fragment is selected from the group consisting of:(a) SEQ ID NO:1; (b) a nucleic acid fragment that encodes the same protein as depicted in SEC ID NO:2 ; and (c) a nucleic acid fragment fully complementary to (a) or (b).
  • 14. The isolated nucleic acid fragment of claim 12, wherein the sequence of said fragment is selected from the group consisting of:(a) SEQ ID NO:3; (b) a nucleic acid fragment that encodes the same protein as depicted in SEQ ID NO:2 ; and (c) a nucleic acid fragment fully complementary to (a) or (b).
  • 15. An isolated nucleic acid fragment consisting essentially of a nucleotide sequence encoding a protein having the amino acid sequence that is SEQ ID NO:2.
  • 16. A vector comprising said isolated nucleic acid fragment of claim 15.
  • 17. The vector of claim 16, wherein said isolated nucleic acid fragment is SEQ ID NO:1, operably linked to a promoter sequence from said vector.
  • 18. A recombinant host cell containing said vector of claim 17.
  • 19. A recombinant host cell containing said vector of claim 16.
  • 20. A method for constructing a recombinant host cell having the potential to express a protein having the amino acid sequence shown in SEQ ID NO:2, said method comprising introducing into said host cell by any suitable means said vector of claim 16.
  • 21. A method for producing a protein having the amino acid sequence of SEQ ID NO:2 in the recombinant host cell of claim 18, said method comprising culturing said recombinant host cell under conditions suitable for production of said protein.
  • 22. The method of claim 21, further comprising recovering said protein.
Parent Case Info

This application claims the benefit of U.S. provisional application No. 60/036,281, filed Dec. 13, 1996.

Non-Patent Literature Citations (6)
Entry
Rudinger In “Peptide Hormones” (ed. J.A. Parsons) University Park Press, Baltimore, pp. 1-7, 1976.*
E. Bruce Konrad, et al. “Genetic and Enzymatic Characterization of a Conditional Lethal Mutant of Escherichia coli K12 with a Temperature-sensitive DNA Ligase” J. Mol. Biol. 77:519-529 (1973).
Yoshizumi Ishino, et al. “Nucleotide sequence of the lig gene and primary structure of DNA ligsase of Escherichia coli” Mol. Gen. Genet. 204:1-7 (1986).
Lawrence S. Morse and Crellin Pauling. “Induction of error-prone repair as a consequence of DNA ligase deficiency in Escherichia coli” Proc. Nat. Acad. Sci. 72(11):4645-4649 (Nov. 1975).
James J. Dermody, et al. “Conditional-Lethal Deoxyribonucleic Acid Ligase Mutant of Escherichia coli” Journal of Bacteriology 139(2): 701-704 (Aug. 1979).
Takashi Sato, et al. “Genetic Analyses of an Amber Mutation in Escherichia coli K-12, Affecting Deoxyribonucleic Acid Ligase and Viability” Journal of Bacteriology 124(3): 1089-1096 (Dec. 1975).
Provisional Applications (1)
Number Date Country
60/036281 Dec 1996 US