Patent Application
20070196360
The present invention relates to maleimide and succinimide derivatives, including succinimide dimers linked by a tether, which act as topoisomerase II catalytic inhibitors. In particular, the present invention relates to the use of these compounds in the optimisation of anti-cancer treatment using currently used cytostatic agents which act as topoisomerase II poisons. The aims are to provide novel cytostatic agents for cancer treatment, to broaden the therapeutical index of classical anti-cancer agents, such as anthracyclines and epipodophyllotoxines, to reduce side effects caused by classical anti-cancer agents, such as extravasation.
The topoisomerase II enzymes belong to a family of nuclear enzymes involved in the processing of DNA during the cell cycle. The essential nuclear enzyme topoisomerase II allows the separation of intertwined DNA strands by creating a transient double strand break in the DNA backbone thereby allowing the passage of another intact DNA double strand through the cleavage.
Topoisomerase II is the target of some of the most successful anti tumour agents used today, e.g. the epipodophyllotoxins etoposide (VP-16) and teniposide (VM-26) in the treatment of testicular and small cell lung cancer (1) and the anthracyclines.
The anthracyclines comprise a group of widely used cytotoxic compounds with activity in numerous malignant diseases. Daunorubicin and doxorubicin, the first anthracycline antibiotics to be discovered in the early 1960's, have a wide range of activity against malignant diseases—daunorubicin primarily in the field of haematological malignancies and doxorubicin against solid tumours. Epirubicin is a stereoisomer of doxorubicin with the same indications but slightly lesser potency and less cardiac toxicity than the parent drug. Idarubicin resembles daunorubicin. It is more lipophilic than the other anthracycline compounds and penetrates the blood-brain barrier more readily.
Drugs acting on topoisomerase II are divided into two main categories; topoisomerase II poisons and topoisomerase II catalytic inhibitors.
The topoisomerase II poisons shift the equilibrium of the catalytic cycle towards the cleavage of the DNA strands, thereby increasing the concentration of the transient protein-associated breaks in the genome (2). That is to say, they trap the cleavable complexes, which converts the essential topoisomerase II enzyme into a lethal one (3). Topoisomerase II poisons stabilise the cleavable complex by halting religation of the DNA in turn leading to the accumulation of the lethal double strand DNA breaks in the cell genome. There is solid evidence that etoposide, as well as a number of other clinically successful anti tumour agents such as daunorubicin and doxorubicin (4), are topoisomerase II poisons (5, 6). Although the precise cell killing mechanism is unknown, an obligatory step for the cytotoxicity of topoisomerase II poisons is related to an increase in cleavable complexes formation between DNA and topoisomerase II in treated cells (5).
The topoisomerase II catalytic inhibitors act through an entirely different mechanism. Rather than stimulating the cleavable complex, these drugs act by inhibiting the overall catalytic activity, of the topoisomerase II enzyme. Catalytic inhibitors act at different stages in the catalytic cycle than poisons do, acting on the topoisomerase II/DNA complex at stages in the catalytic cycle where DNA is not cleaved. This happens in at least two ways. (I) by inhibiting the binding of topoisomerase II to DNA, thereby suppressing the interaction between the enzyme, the topoisomerase II targeting drug and the DNA. This is believed to be the case for chloroquine (7) and aclarubicin (8,9); (II) by locking topoisomerase II in its closed-clamp step after religation, which is the mode of action of the bisdioxopiperazines including ICRF-187 (10-14). By locking the enzyme in its closed clamp formation, the bisdioxopiperazines hinder topoisomerase II poisons from exerting their cytotoxicity. The catalytic inhibitor of topoisomerase II, ICRF-187, abolishes both DNA breaks and cytotoxicity caused by the topoisomerase II poisons etoposide and daunorubicin (15).
The term “extravasation” is intended to relate to the escape of a chemotherapeutic drug from a vessel to the surrounding tissue, which may occur either by leakage of direct infiltration.
In cancer treatment, accidental extravasation is a feared complication, especially from drugs such as the anthracyclines, mitomycin, vincristine, and vinoorelbine, which are examples of vessicant drugs. Vessicant drugs cause tissue destruction upon infiltration. Extravasation is the unintended presence of a vessicant outside the vascular bed or vasculature.
The term “anti-extravasation agent” is intended to mean a compound which blocks or attenuates the local tissue toxicity caused by a vessicant.
Accidental extravasation has been estimated to occur in up to 6% of all patients receiving chemotherapy. Chemotherapeutic agents, such as the anthracydines, are especially prone to cause severe tissue damage on extravasation. The tissue injury may not appear for several days or even weeks but when it appears it may continue to worsen for months, probably due to drug recycling into adjacent tissue. The local toxicity is characterised by acute pain, erythema, and swelling at the extravasation site and it often progresses to ulceration.
The present investigators have demonstrated, in animal studies, as well as on patients, that treatment with ICRF-187 protected against anthracycline extravasation injuries (19-21).
The bisdioxopiperazine ICRF-187 (dexrazoxane) is the water-soluble (+)-enantiomer of razoxane (ICRF-159). ICRF-187 is approved as a cardioprotective agent (Zinecard®, Cardioxane®) against anthracycline induced cardiotoxicity.
A hypothesis has been that ICRF-187, as an analogue of the cation binder EDTA, protects against free radical damage by binding to Fe++ and thus concealing iron from oxygen (16). However, the present investigators have recently demonstrated that cells with acquired resistance to ICRF-187 carry mutations in topoisomerase IIα (an isoform of topoisomerase II) which maps to different regions in topoisomerase II than those induced by topoisomerase II poisons such as daunorubicin and etoposide. The use of conditional expression of human topoisomerase II in yeast as well as characterization of purified topoisomerase II containing these mutations have confirmed that these mutations are functional (17,18). On this basis, it was concluded by the present investigators that ICRF-187 is a specific topoisomerase II agent.
Two models illustrate the use of catalytic inhibitors in pharmacologic regulation of topoisomerase II poisons (22). (I) A targeted high-dose treatment with etoposide based on physiological differences between normal (non-malignant) tissue and solid tumours may be achieved using the basic catalytic inhibitor chloroquine. At normal pH (in normal tissue), the chloroquine will (in its uncharged form) cross biomembranes thereby protecting the tissue from the poisonous attack. In cancer cells with weak acidic extracellular micro environment, the partly ionised catalytic inhibitor is no longer able to pass biomembranes, thus leaving the cancer cells exposed to the cytotoxic effect of the poison.
(II) Using ICRF-187, compartment directed high dose treatment with etoposide was obtained in the central nervous system (CNS) in a mouse model. In this case the protection of the peripheral tissue by the catalytic inhibitor is based on differences in lipophilicity between ICRF-187 and the topoisomerase II poison etoposide Studies concerning patients suffering from primary cancer outside the CNS show that about 25% of the patients develop brain metastasis. The risk of developing metastasis is dependent on the specific cancer form. The metastatic complications may be the patient's first symptom of cancer and may then produce serious neurological complications. Due to poor accessibility of the currently clinically used topoisomerase II poisons into the brain, the need for development of new catalytic inhibitors allowing dose escalation and thereby enhanced CNS effect is urgent.
The use of the catalytic inhibitor ICRF-187 in accidental extravasation caused by anthracyclines is yet another example of reducing the side effects of topoisomerase II poisons hereby optimising the overall treatment of the patients. It is one object of the present invention to provide more compounds suitable for reducing side effects caused by chemotherapeutic agents and thereby optimising the overall treatment of cancer patients.
The use of super lethal doses of topoisomerase II poisons in combination with catalytic topoisomerase II inhibitors have proven an interesting strategy in the anticancer treatment. Selectivity can thus be obtained indirectly by the development of catalytic inhibitors capable of protecting specific targets thereby exerting the protective effect. Due to the non-optimal profile of the known catalytic inhibitors (toxicity, PK-properties etc) highly specific protection/cytotoxicity restriction is not obtained at present. Therefore there is an urgent need for the development of new catalytic inhibitors for use in the pharmalogical regulation of topoisomerase II poisons in anti cancer treatment
Thus, the use of novel catalytic inhibitors of topoisomerase II included in the present invention will improve the anti-cancer treatment obtained with the classical topoisomerase II poisons resulting in a broader therapeutic index for these drugs by reducing the side effects (toxicity) or by enhancing the effect of the poison obtained by dose escalation. There is also a urgent need for new compounds which are effective cytostatic or cytotoxic agents, themselves, in the treatment of cancer. A further aspect of the present invention is to provide for this need by providing compounds which are effective catalytic inhibitors of topoisomerase II and therefore effective chemotherapeutic agents in themselves. In this context novel compounds have been developed in order to obtain more effective catalytic inhibitors of topoisomerase II.
In testing the hypothesis that thiol-modification of DNA-bound topoisomerase II by quinones was involved in the stimulation of topoisomerase II-mediated DNA cleavage, Wang et al (28) tested a number of alkylating agents including quinones, N-ethylmaleimide (NEM), Disulfiram, and 2,2′-dithiobis-(5-nitropyridine) derivatives for their ability to stimulate topoisomerase II-mediated DNA cleavage. The results led Wang et al to postulate that these compounds act as topoisomerase II poisons by means of a Michael-addition to the enzyme. The present inventors have likewise examined the potential use of the thiol-reactive compounds maleimide and its N-substituted derivatives n-methyl-maleimide (NMM) and N-ethyl-maleimide (NEM) as topoisomerase II catalytic inhibitors. They have found that maleimide, NMM and NEM are potent catalytic inhibitors of purified human topoisomerase II α. Maleimide and NEM are also able to antagonize etoposide induced topoisomerase II mediated DNA double strand cleavage in the test tube. Maleimide is further capable of protecting intact cells from etoposide induced DNA damage as well as from etoposide induced cytotoxicity. Finally, at-MDR cell lines with reduced nuclear topoisomerase II content are fully sensitive to maleimide, indicating that it is not a topoisomerase II poison in vivo. These findings provide strong evidence that these compounds acts as topoisomerase II catalytic inhibitors and not as topoisomerase II poisons as reported in (28) The present inventers suggest that the observed antagonism in vitro and in vivo is caused by covalent modification of topoisomerase II cysteine residues reducing the amount of catalytically active enzyme sensitive to the action of topoisomerase II poisons, opening up for their use as novel topoisomerase II catalytic inhibitors. The inventors have further developed a new maleimide analogue TT0043 capable of antagonizing the cytotoxic effect of topoisomerase II poisons using cultured human cancer cells. The use of such novel thiol-reactive maleimide derivatives as catalytic inhibitors of topoisomerase II thus constitutes an important aspect of the present invention.
In a first aspect, the invention relates to the use of a compound of formula I, quaternary ammonium salts thereof, or compositions comprising either entity, for the preparation of a human topoisomerase II catalytic inhibitor,
wherein -J- is selected from the group consisting of
—OE is a carbonyl equivalent such as selected from the group consisting of ═O, ═S; —OR2, —SR2, dithiane and dioxolane;
R1 is selected from the group consisting of —OE, OR2, N(RN)(RN), S—R2, NO2, —CN, and halogen;
RN is selected from the group consisting of hydrogen, optionally substituted C1-6-alkyl, optionally substituted C2-10-alkenyl, optionally substituted C2-10-alkynyl, optionally substituted aryl, optionally substituted heteroaryl, optionally substituted heterocycle, optionally substituted C3-C7-cycloalkyl, CH2—N(R3)(R3), CH2—OR3, CH2—SR3, CH2—O—C(═O)R3, CH2—O—C(═O)—OR3, CH2—O—C(═S)R3, CH2—S—C(═O)R31, C(═O)(R3), C(═S)R3, —C(═S)—OR3, —C(═O)—SR3, C(═O)—N(R3)(R3), C(C═S)—N(R3)(R3);
-A- and -A′- is selected from the group consisting of hydrogen, —C(R2)(R2)—, —C(═O)—, —N(RN)—, —O—, —S—, —P—, —P(O)—;
Y and Y′ are each a biradical which may be absent or independently selected from one of the group consisting of optionally substituted C1-5-alkyl, optionally substituted C(═O)—C1-6-alkyl, optionally substituted C1-6-alkyl-C(═O), optionally substituted C2-10-alkenyl, optionally substituted C2-10-alkynyl, optionally substituted C3-8-carbocycle and optionally substituted heterocycle;
Z and Z′ are each a monoradical independently selected from the group consisting of optionally substituted aryl, optionally substituted heteroaryl, optionally substituted C3-carbocyle, optionally substituted heterocycle, H, ORZ, N(RZ)(R3), S—RZ, NO2, —CN, and halogen;
wherein RZ is selected from the group consisting of hydrogen, optionally substituted C1-4 alkyl, optionally substituted C2-5 alkenyl, optionally substituted C2-6 alkynyl, optionally substituted aryl, optionally substituted heteroaryl, optionally substituted heterocycle, and optionally substituted C3-C7 cycloalkyl;
n is a whole number and m is a whole number, and wherein
R2 and R3 are independently selected from the group consisting of hydrogen, halogen, hydroxy, optionally substituted C1-6-alkyl, optionally substituted C2-5 alkenyl, optionally substituted C2-6 alkynyl, optionally substituted aryl, optionally substituted heteroaryl, optionally substituted heterocycle, and optionally substituted C3-C7 cycloalkyl.
Accordingly, the present invention relates to a method of treating diseases and disorders for which inhibition or modulation of the topoisomerase II enzyme produces a physiologically beneficial response in said disease or disorder comprising the step of administering an effective amount of a compound of formula I, as described supra.
Compounds of the formula I, as topoisomerase inhibitors may be effective, in themselves, in the treatment of an array of forms of cancers. A method of treating cancer using compounds of formula I is a further aspect of the present invention as is the use of compound of formula I for preparation of a medicament for the treatment of cancer.
Furthermore, compounds of the formula I, as topoisomerase inhibitors, may serve to broaden the therapeutic index of other chemotherapeutic agents. Compounds of the present invention may serve to reduce side effects associated with other chemotherapeutic agents or by enhancing the effect of the chemotherapeutic agents. Thus, a further aspect of the present invention relates to the use of compounds of formula I in combination with at least one other chemotherapeutic agent for the effective treatment of cancer.
Compounds of formula I are topoisomerase II catalytic inhibitors and, as such, may be used as pharmacological regulators of topoisomerase II which are exploited in a number of applications according to the present invention including the following:
1. To achieve dose escalation of classical topoisomerase II poisons such as etoposide (VP-16) as a mean of targeting the anti-tumour effect of such compounds to the central nervous system (CNS);
2. To target the cytotoxicity of known topoisomerase II poisons to acid microenvironments such as solid tumours;
3. To reduce the tissue destructive effect of known anticancer agents including topoisomerase II poisons in accidental extravasation occurring in the course of cancer treatment in general;
4. To act as anti-tumour agents in themselves my means of inhibiting essential topoisomerase II catalytic activity.
Thus, the compounds of formula I may be used in a method of preventing or treating tissue damage due to extravasation in an individual. The use of compounds of formula I as anti-extravasation agents is an important aspect of the present invention.
A further aspect of the present invention relates to compounds of formula II for use as medicament,
wherein Y is a biradical independently selected from of the group consisting of C1-6-alkyl, C(═O)-C1-6-alkyl, C1-6-alkyl-C(═O), C2-10-alkenyl, C2-10-alkynyl, C3-8-carbocycle, heterocycle, each of which may be optionally substituted; X is selected from the group consisting of N(R2), O, and S; RN is selected from the group consisting of hydrogen, optionally substituted C1-8 alkyl, optionally substituted C2-10-alkenyl, optionally substituted C2-10 alkynyl, optionally substituted aryl, optionally substituted heteroaryl, optionally substituted heterocycle, optionally substituted C3-C7-cycloalkyl, CH2—N(R3)(R3), CH2—OR3, CH2—SR3, CH2—O—C(═O)R3, CH2—O—C(═S)R3, CH2—S—C(═O)R3, C(═O)(R3), C(═S)R3, —C(═S)—OR3, —C(═O)—SR3, C(═O)—N(R3)(R3), C(C═S)—N(R3)(R3); R and R2 are independently selected from the group consisting of hydrogen, optionally substituted C1-6 alkyl, optionally substituted C2-5 alkenyl, optionally substituted C2-6 alkynyl, optionally substituted aryl, optionally substituted heteroaryl, optionally substituted heterocycle, and optionally substituted C3-C7 cycloalkyl.
Furthermore, given a subclass of compounds are novel in themselves, a further aspect of the invention relates to compounds of formula III
wherein RN is selected from the group consisting of hydrogen, CH2—N(R4)(R4), CH2—OR4, and CH2—O—C(═O)R4; A and A′ are independently selected from the group consisting of N(R4)(R5) and O; n and m are independently selected whole numbers in the range of 0 to 8, Z and Z′ are selected from the group consisting of hydrogen and N(RZ)(R4) wherein RZ is an optionally substituted heterocycle; —OE is a carbonyl equivalent such as selected from the group consisting of ═O, ═S; —OR2, —SR2, dithiane, dioxolane and dioxane, R1 is selected from the group consisting of —OE, OR2, N(R2)(R2), S—R2, NO2, —CN, and halogen; R2 and R3 are independently selected from the group consisting of hydrogen, halogen, optionally substituted C1-4-alkyl, optionally substituted C2-5-alkenyl, optionally substituted C2-6-alkynyl, optionally substituted aryl, optionally substituted heteroaryl, optionally substituted heterocycle, and optionally substituted C3-C7-cycloalkyl; RZ, R4 and R5 are independently selected from the group consisting of hydrogen, optionally substituted C1-6 alkyl, optionally substituted C2-5 alkenyl, optionally substituted C2-6 alkynyl, optionally substituted aryl, optionally substituted heteroaryl, optionally substituted heterocycle, and optionally substituted C3-C7 cycloalkyl.
As stated, the present invention relates to the use of a compound of formula I, quaternary ammonium salts thereof, or compositions comprising either entity, for the preparation of a human topoisomerase II catalytic inhibitor,
wherein -J- is selected from the group consisting of
—OE is a carbonyl equivalent such as selected from the group consisting of ═O, ═S; —OR2, —SR2, dithiane and dioxolane;
R1 is selected from the group consisting of —OE, OR2, N(RN)(RN), S—R2, NO2, —CN, and halogen;
RN is selected from the group consisting of hydrogen, optionally substituted C1-6-alkyl, optionally substituted C2-10-alkenyl, optionally substituted C2-10-alkynyl, optionally substituted aryl, optionally substituted heteroaryl, optionally substituted heterocycle, optionally substituted C3-7-cycloalkyl, CH2—N(R3)(R3), CH2—OR3, CH2—SR3, CH2—O—C(═O)R3, CH2—O—C(═O)—OR3, CH2—O—C(═S)R3, CH2—S—C(═O)R3, C(═O)(R3), C(═S)R3, —C(═S)—OR3, —C(═O)—SR3, C(═O)—N(R3)(R3), C(C═S)—N(R3)(R3);
-A- and -A′- is selected from the group consisting of hydrogen, —C(R2)(R2)—, —C(═O)—, —N(RN)—, —O—, —S—, —P—, —P(O)—;
Y and Y′ are each a biradical which may be absent or independently selected from one of the group consisting of optionally substituted C1-6-alkyl, optionally substituted C(═O)—C1-6-alkyl, optionally substituted C1-6-alkyl-C(═O), optionally substituted C2-10-alkenyl, optionally substituted C2-10-alkynyl, optionally substituted C3-8-carbocycle and optionally substituted heterocycle;
Z and Z′ are each a monoradical independently selected from the group consisting of optionally substituted aryl, optionally substituted heteroaryl, optionally substituted C3-8-carbocyle, optionally substituted heterocycle, H, ORZ, N(RZ)(R3), S—RZ, NO2, —CN, and halogen;
wherein RZ is selected from the group consisting of hydrogen, optionally substituted C1-4 alkyl, optionally substituted C2-5 alkenyl, optionally substituted C2-6 alkynyl, optionally substituted aryl, optionally substituted heteroaryl, optionally substituted heterocycle, and optionally substituted C3-C7 cycloalkyl;
n is a whole number and m is a whole number, and wherein
R2 and R3 are independently selected from the group consisting of hydrogen, halogen, hydroxy, optionally substituted C1-6-alkyl, optionally substituted C2-5 alkenyl, optionally substituted CZ-6 alkynyl, optionally substituted aryl, optionally substituted heteroaryl, optionally substituted heterocycle, and optionally substituted C3-C7 cycloalkyl.
In the present context the term “C1-6-alkyl” is intended to mean a linear or branched saturated hydrocarbon chain wherein the longest chains has from one to six carbon atoms, such as methyl, ethyl, n-propyl, isopropyl, n-butyl, isobutyl, sec-butyl, tert-butyl, pentyl, isopentyl, neopentyl and hexyl. A branched hydrocarbon chain is intended to mean a C1-6-alkyl substituted at any carbon with a hydrocarbon chain.
In the present context the term “C2-10-alkenyl” is intended to mean a linear or branched hydrocarbon group having from two to eight carbon atoms and containing one or more double bonds. Examples of C2-8-alkenyl groups include allyl, homo-allyl, vinyl, crotyl, butenyl, pentenyl, hexenyl, heptenyl and octenyl. Examples of C2-10-alkenyl groups with more than one double bond include butadienyl, pentadienyl, hexadienyl, heptadienyl, hexatrienyl, heptatrienyl and octatrienyl groups as well as branched forms of these. The position of the unsaturation (the double bond) may be at any position along the carbon chain and the term is intended to include alkylidene groups.
In the present context the term “C2-10-alkynyl” is intended to mean linear or branched hydrocarbon groups containing from two to ten carbon atoms and containing one or more triple bonds. Examples of C2-10-alkynyl groups include acetylene, propynyl, butynyl, pentynyl, hexynyl, heptynyl and octynyl groups as well as branched forms of these The position of unsaturation (the triple bond) may be at any position along the carbon chain the term is intended to include alkylidyne groups. More than one bond may be unsaturated such that the “C2-10-alkynyl” is a di-ynes or enedi-ynes as it is known to the person skilled in the art.
In the present context the term “C3-8-cycloalkyl” is intended to cover three-, four-, five-, six- seven-, and eight-membered rings comprising carbon atoms only whereas the term “heterocyclyl” is intended to mean three-, four-, five-, six- seven-, and eight-membered rings wherein carbon atoms together with from 1 to 3 heteroatoms constitute said ring. The heteroatoms are independently selected from oxygen, sulphur, and nitrogen.
C3-8-cycloalkyl and heterocyclyl rings may optionally contain one or more unsaturated bonds situated, however, in such a way that an aromatic π-electron system does not arise.
Examples of preferred “C3-8-cycloalkyl” are the carbocycles cyclopropane, cyclobutane, cyclopentane, cyclopentene, cyclopentadiene, cyclohexane, cyclohexene, 1,3-cyclohexadiene, 1,4-cyclohexadiene, cycloheptane, cycloheptene, 1,2-cycloheptadiene, 1,3-cycloheptadiene, 1,4-cycloheptadiene and 1,3,5 cycloheptatriene.
Examples of “heterocycles” are the heterocycles 2H-thipyran, 3H-thipyran, 4H-thipyran, tetrahydrothiopyran, 2H-pyran, 4H-pyran, tetrahydropyran, piperidine, 1,2-dithiin, 1,2-dithiane, 1,3-dithiin, 1,3-dithiane, 1,4-dithiin, 1,4-dithiane, 1,2-dioxin, 1,2-dioxane, 1,3-dioxin, 1,3-dioxane, 1,4-dioxin, 1,4-dioxane, piperazine, 1,2-oxathlin, 1,2-oxathiane, 4H-1,3-oxathiin, 1,3-oxathiane, 1,4-oxathiin, 1,4-oxathiane, 2H-1,2-thiazine, tetrahydro-1,2-thiazine, 2H-1,3-thiazine, 4H-1,3-thiazine, 5,6-dihydro-4H-thiazine, 4H-1,4-thiazine, tetrahydro-1,4-thiazine, 2H-1,2-oxazine, 4H-1,2-oxazine, 6H-1,2-oxazine, 2H1,3-oxazine, 4H-1,3-oxazine, 4H-1,4-oxazine, maleimide, succinimide, imidazole, pyrazole, pyrrole, oxazole, furazan, barbituric acid, thiobarbituric acid, dioxopiperazine, isoxazole, hydantoin, dihydrouracil, morpholine, trioxane, 4H-1,2,3-trithiin, 1,2,3-trithiane, 1,3,5-trithiane, hexahydro-1,3,5-triazine, tetrahydrothiophene, tetrahydrofuran, pyrroline, pyrrolidine, pyrrolidone, pyrrolidione, pyrazoline, pyrazolidine, imidazoline, imidazolidine, 1,2-dioxole, 1,2-dioxolane, 1,3-dioxole, 1,3-dioxolane, 3H-1,2-dithiole, 1,2-dithiolane, 1,3-dithiole, 1,3-dithiolane, isoxazoline, isoxazolidine, oxazoline, oxazolidine, thiazoline, thiozolidine, 3H-1,2-oxathiole, 1,2-oxathiolane, 5H-1,2-oxathiole, 1,3-oxathiole, 1,3-oxathiolane, 1,2,3-trithiole, 1,2,3-trithiolane, 1,2,4-trithiolane, 1,2,3-trioxole, 1,2,3-trioxolane. 1,2,4-trioxolane, 1,2,3-triazoline and 1,2,3-triazolidine.
In the present context the term “aryl” is intended to mean a carbocyclic aromatic ring or ring system. Moreover, the term “aryl” includes fused ring systems wherein at least two aryl rings, or at least one aryl and at least one C3-8-cycloalkyl, or at least one aryl and at least one heterocyclyl, share at least one carbon atom, such as in a spiro sytem or at least chemical bond, such as in a fused system. Examples of “aryl” rings include optionally substituted phenyl, naphthalenyl, phenanthrenyl, anthracenyl, acenaphthylenyl, tetralinyl, fluorenyl, indenyl, indolyl, coumaranyl, coumarinyl, chromanyl, isochromanyl, and azulenyl. A preferred aryl group is phenyl.
In the present context, the term “heteroaryl” is intended to mean an aryl group where one or more carbon atoms in an aromatic ring have been replaced with one or more heteroatoms selected from the group comprising nitrogen, sulphur, phosphorous and oxygen. Furthermore, in the present context, the term “heteroaryl” comprises fused ring systems wherein at least one aryl ring and at least one heteroaryl ring, at least two heteroaryls, at least one heteroaryl and at least one heterocyclyl, or at least one heteroaryl and at least one C3-1-cycloalkyl share at least one chemical bond, such as two chemical bonds. Examples of a heteroaryl may be selected from the group comprising furanyl, thiophenyl, pyrrolyl, phenoxazonyl, oxazolyl, thiazolyl, isothiazolyl, imidazolyl, pyrazolyl, isoxazolyl, imidazolyl isothiazolyl, oxadiazolyl, furazanyl, triazolyl, thiadiazolyl, piperidinyl, pyridinyl, pyridazinyl, pyrimidinyl, pyrazinyl, pyrazolyl and triazinyl, isoindolyl, indolinyl, benzofuranyl, benzothiophenyl, benzopyrazolyl, indazolyl, benzimidazolyl, benzthiazolyl, purinyl, quinolizinyl, quinolinyl, isoquinolinyl, cinnolinyl, phthalazinyl, quinazolinyl, quinoxalinyl, naphthyridinyl, pteridinylthienofuranyl, carbazolyl, acridinyl, phenazinyl, phenothiazinyl, phenoxazinyl and thianthrenyl.
When used herein the term “C1-6-alkoxy” is intended to mean C1-6-alkyl-oxy such as methoxy, ethoxy, n-propoxy, isopropoxy, n-butoxy, isobutoxy, sec-butoxy, tert-butoxy, pentoxy, isopentoxy, neopentoxy and hexoxy
The term “halogen” includes fluorine, chlorine, bromine and iodine.
In the present context, i.e. in connection with the terms “aryl”, “heteroaryl”, “C3-8-cycloalkyl”, “heterocylyl”, “C1-6-alkyl”, “C1-6-alkoxy”, “C2-8-alkenyl”, and “C2-8-alkynyl”, the term “optionally substituted” is intended to mean that the group in question may be substituted one or several times, such as 1 to 5 times, preferably 1 to 3 times, most preferably 1 to 2 times, with one or more groups selected from C1-6-alkyl, C1-6-alkoxyl, oxo (which may be represented in the tautomeric enol form), carboxyl, amino, hydroxyl (which when present in an enol system may be represented in the tautomeric keto form), nitro, sulphono, sulphanyl, sulfoxide, C1-6-carboxyl, C1-6-alkoxycarbonyl, C1-6-alkylcarbonyl, formyl, aryl, aryloxy, aryloxycarbonyl, arylcarbonyl, heteroaryl, amino, mono- and di(C1-4-alkyl)amino; carbamoyl, mono- and di(C1-6-alkyl)aminocarbonyl, amino-C1-6-alkyl-aminocarbonyl, mono- and di(C1-6-alkyl)amino-C1-6-alkyl-aminocarbonyl, C1-6-alkylcarbonylamino, cyano, guanidino, carbamido, C1-6-alkanoyloxy, C1-6-alkylsulphonyloxy, dihalogen-C1-6-alkyl, trihalogen-C1-6-alkyl, halogen, where aryl and heteroaryl representing substituents may be substituted 1-3 times with C1-6-alkyl, C1-6-alkoxy, sulfoxide, nitro, cyano, hydroxy, amino or halogen. In general, the above substituents may be susceptible to further optional substitution.
The term “salts” is intended to mean pharmaceutically acceptable acid addition salts obtainable by treating the base form of a functional group, such as an amine, with appropriate acids such as inorganic acids, for example hydrohalic adds; typically hydrochloric, hydrobromic, hydrofluoric, or hydroiodic acid; sulfuric acid; nitric acid; phosphoric acid and the like; or organic acids, for example acetic, propionic, hydroacetic, 2-hydroxypropanoic acid, 2-oxopropanoic acid, ethandioic, propanedioic, butanedioic, (Z)-2-butenedioic, (E)-butenedioic, 2-hydroxybutanedioic, 2,3-dihydroxybutanedioic, 2-hydroxy-1,2,3-propanetricarboxylic, methanesulfonic, ethanesulfonic, 2-5 hydroxyethanesulfonic acid, benzenesulfonic, 4-methylbenzenesulfonic acid, cyclohexanesulfamic, 2-hydoxybenzoic, fumaric acid, 4-amino-2-hydroxybenzoic, and other acids known to the skilled practitioner.
The term “carbonyl equivalent” is intended to mean derivatives of the carbonyl functional group as known to the person skilled in the art and are intended to include alkylated tautomers thereof, protected forms of the functional group and reduced-protected forms of the functional group.
The present compounds of formula I were surprisingly found to be catalytic inhibitors of topoisomerase II. Compounds of formula I have never been associated with topoisomerase II, nor for cancer treatment. Compounds of formula I can be loosely described as succinimide derivatives (compounds of formula D), whereas compounds of formula M are maleimide derivatives, both differing notably from the bisdioxopiperazine ICRF-187 (dexrazoxane), which is a highly specific topoisomerase II catalytic inhibitor. Compounds of formula I may be selected from the group consisting of compounds of formula M and D
wherein at least one of R6 and R7 are independently selected from a group consisting of hydrogen, halogen, hydroxy, primary, secondary or tertiary amine, optionally substituted C1-6-alkyl, optionally substituted CZ-5-alkenyl, optionally substituted C2-6-alkynyl, optionally substituted aryl, optionally substituted heteroaryl, optionally substituted heterocycle, and optionally substituted C3-C7 cycloalkyl; and the other of R6 and R7 is A-Y-Z, as defined supra.
The present investigators have surprisingly found that the compounds of formula M, such as maleimide, NNM and NEM, function as topoisomerase catalytic inhibitors in vitro as well as in intact cells. Contrary to the Wang et al's teaching that NEM increases the level of DNA cleavage with purified topoisomerase II in vitro, the present investigators have found that NEM as well as maleimide does not stimulate DNA cleavage in vitro. On the contrary, the present inventors find that maleimide and NEM are both capable of antagonising VP-16 induced topoisomerase II mediated plasmid DNA cleavage in vitro. Additionally, the present inventors have found that the compounds of formula M only induce modest levels of DNA damage in NYH cells, at concentrations up to 250 uM while expensive DNA damage is provided by 3 uM etoposide. Also, in alkaline elution assays, the compound of formula M, maleimide, was found to antagonize DNA damage induced by etoposide, daunorubicin or doxorubicin. Thus, the present inventors find that compounds of formula M behave not as topoisomerase II poisons but rather as topoisomerase II inhibitors.
This was confirmed in a clonogenic assay where maleimide, N-methyl-maleimide (NMM), N-ethyl-maleimide (NEM) as well as TT0043 effectively blocked the cytotoxicity of etoposide and daunorubicin, providing further evidence that compounds of formula M are catalytic inhibitors of topoisomerase II. Further corroboration of catalytic inhibitory activity of compounds of formula M was found in clonogenic assays on human lung cancer cell lines H69/dau and H69/VP because no resistance to compounds of formula M was found in these cell lines which are selected to be daunorubicin and, etopside (VP-16) resistant respectively. These lines exhibit cross-resistance to all known topoisomerase II poisons This finding strengthens the notion that compounds of formula M are not topoisomerase II poisons but catalytic topoisomerase II inhibitors.
Accordingly, in preferred embodiments of compounds of formula M, R1 is preferably selected from the group consisting of ═OE and OR4, most preferably wherein R1 is the carbonyl equivalent ═OE. As is known to the person skilled in the art, however, carbonyl groups (C═O) may be protected so as to dampen their reactivity. Thus, the carbonyl group or groups of compound M may be protected in a manner known to the person skilled in the art, such as its dioxolane or dithiane. Similarly, the carbonyl equivalent may be a thiocarbonyl or protected forms thereof. Alternatively, tautomers of the carbonyl or thiocarbonyl may be prepared and protected with, for instance, an alkyl chain. In a preferred embodiment of compounds of formula M, R1 is ═O.
In a further interesting embodiment of the present invention, the imide nitrogen is derivatized so as to render the compounds of formula M suitable pro-drugs for administration. In suitable embodiment of the compounds, RN is selected from the group consisting of hydrogen, C1-6-alkyl, optionally substituted aryl, optionally substituted heteroaryl, optionally substituted CH2-aryl, CH2—N(R4)(R4), CH2—OR4, CH2—SR4, CH2—O—C(═O)R4, CH2—O—C(═S)R4. In particularly interesting embodiments of compounds of formula M, RN is selected from the group consisting of hydrogen, optionally substituted C1-6-alkyl, optionally substituted aryl, optionally substituted heteroaryl, optionally substituted CH2-aryl, as well as
Illustrative embodiments of compounds of formula M demonstrating suitable embodiments of RN are compounds of formula TTO046 (wherein RN is H), TT0048, TT0051 and TT006.
Further illustrative compounds, wherein RN is an aliphatic amine linked to a ring system include M-i, M-ii, M-iii, M-iv, M-v, M-vi and M-vii
In a further suitable embodiments, RN is an aliphatic amine wherein the amine nitrogen is part of ring system. Within such interesting embodiments comprises the embodiment comprising a maleimide dimer, linked through their respective imide nitrogens an aliphatic chain. The chain linking two ring systems may be of other chain lengths are further comprise functional groups and substituents, as is known to the person skilled in the art. Suitable embodiments comprise M-viii, M-ix, M-x, and M-xi.
A particular interesting embodiment is wherein RN comprises a heterocycle. The heterocyle may be substituted. In a suitable example, the heterocycle is substituted with a substituent which comprises a sulfoxide (SO3H, SO2), a hydroxy, a halogen, or any array of optional substituent as defined supra.
The rings of RN may be substituted in a manner known to the person skilled in the art. In a further preferred embodiment, at least one of R6 and R7 is hydrogen. In a combination of preferred embodiments, R1 is preferably ═O and at least one of R6 and R7 is hydrogen. In such an embodiment, the other of R6 and R7 is A-Y-Z, wherein A, Y and Z are as defined supra. In the embodiment wherein at least one of R6 and R7 is hydrogen and A is hydrogen, the compound of formula M is maleimide itself.
As can be seen from compound TT0046, in a suitable embodiment of compounds of formula M, R6 and R7 may together form a ring. Thus, R6 and R7 may together form a C3-8-carbocycle, heterocycyl, aryl or heteroaryl, each of which may optionally be substituted, preferably a C3-8-carbocycle, such as cyclohexane.
In an interesting embodiment of compounds of formula M, OE is ═O, R1 is ═O, RN is hydrogen, one of R6 and R7 is hydrogen, and the other of R6 and R7 is optionally substituted C1-6-alkyl, such as selected from methyl (compound TT0043) or ethyl. Various tests were performed on compound TT0043 as illustrated in the Examples.
In the preferred embodiment wherein one of R6 and R7 is hydrogen and the other of R6 and R7 is A-Y-Z, A may be selected from the group consisting of hydrogen, —C(R2)(R2)—, —C(═O)—, —N(RN)—, —O—, —S—, —P—, —P(O)—; Y may be absent or selected from one of the group consisting of optionally substituted C1-6-alkyl, optionally substituted C(═O)—C1-6-alkyl, optionally substituted C1-6-alkyl-C(═O), optionally substituted C2-10-alkenyl, optionally substituted C2-10-alkynyl, optionally substituted C3-8-carbocycle and optionally substituted heterocycle; and Z is a monoradical selected from the group consisting of optionally substituted aryl, optionally substituted heteroaryl, optionally substituted C3-8-carbocyle, optionally substituted heterocycle, H, OR2, N(R2)(R3), S—R2, NO2, —CN, and halogen.
In an interesting embodiment of compounds of formula M, one of R6 and R7 is hydrogen and the other of R6 and R7 is A-Y-Z wherein Z is selected from the group consisting of N(R8)(R9) and optionally substituted heteroaryl. In the suitable embodiment Z is an optionally substituted heterocycle, such as a nitrogen-, oxygen-, or sulfur-containing heterocycle. Preferably, the heterocycle is a nitrogen-containing heterocycle. In the embodiment wherein Z is a heterocycle, the heterocycle is preferably selected from the group consisting of maleimide, succinimide, hydantoin, thio-hydantoin, dioxypiperazine, dihydrouracil, imidazole, pyrazole, pyrrole, oxazole, furazan, barbituric acid, thiobarbituric acid, 3-alkoxyisoxazole, quinoline, aminoacridine, and cytosine, each of which may be optionally substituted. A particular interesting embodiment is wherein RN comprises a heterocycle. The heterocyle may be substituted. In the suitable example wherein Z is a heterocycle, said heterocyle is optionally substituted with a substituent which comprises a sulfoxide (SO3H, SO2), a hydroxy, a halogen, an amine, or any array of optional substituent as defined supra.
In the embodiment wherein Z is a nitrogen-containing heterocycle, said heterocycle may be attached to Y by means of the nitrogen or by means of a carbon atom present in the heterocycle.
As stated, in an interesting embodiment of compounds of formula M, one of R6 and R7 is hydrogen and the other of R6 and R7 is A-Y-Z wherein Z is selected from the group consisting of N(R8)(R9), optionally substituted heteroaryl and optionally substituted heterocycyl. In the embodiment wherein Z is N(R8)(R9), R8 and R9 may independently be selected from the group consisting of hydrogen, optionally substituted C1-6-alkyl, optionally substituted C2-10-alkenyl, optionally substituted C2-10-alkynyl, optionally substituted aryl, optionally substituted heteroaryl, optionally substituted heterocycle, optionally substituted
C3-C7-cycloalkyl, CH2—N(R3)(R3), CH2—OR3, CH2—SR3, CH2—O—C(═O)R3, CH2—O—C(═O)—OR3, CH2—O—C(═S)R3, CH2—S—C(═O)R3, C(═O)(R3), C(═S)R3, —C(═S)—OR3, —C(═O)—SR3, C(═O)—N(R3)(R3) and C(C═S)—N(R3)(R3). In a preferred embodiment, at least one of R8 and R9 is selected from the group consisting of optionally substituted heteroaryl and optionally substituted heterocycle, preferably an optionally substituted heterocycle. The present investigators have prepared compounds of formula M wherein Z is N(R8)(R9) and one of R8 and R9 is an optionally substituted heterocycle is preferably selected from the group consisting of adenine, benzothiazole, maleimide, succinimide, hydantoin, thio-hydantoin, dioxypiperazine, dihydrouracil, imidazole, pyrazole, pyrrole, oxazole, furazan, barbituric acid, thiobarbituric acid, 3-alkoxylsoxazole, quinoline, aminoacridine, and cytosine, each of which may be optionally substituted. In the suitable example wherein one of R8 and R9 is an optionally substituted heterocycle, said heterocyle is optionally substituted with a substituent which comprises a sulfoxide (SO3H, SO2), a hydroxy, a halogen, an amine, or any array of optional substituent as defined supra.
As stated, the compound of formula I may be a compound of formula D, a 3-substituted succinimide. Substitution at the 3-position may be by an optionally substituted alkyl, an amine, an ether or a thioether such that A is selected from the group consisting of C(R2R3), N(R2), O, and S. In embodiments of compounds of formula D, the 3-position is preferably substituted with an amine, an ether or a thioether such that A is preferably N(R2), O, and S, most preferably N(R2) and S. In a most preferred embodiment, compounds of formula D is a 3-amino succinimide, such that A is N(R2).
Substitution at the 3-postion of compounds of formula D may be by a chain of any array of lengths such that amine, ether, thioether or alkyl at the 3-position is bonded to Y wherein Y is biradical which may be absent or independently selected from of the group consisting of optionally substituted C1-6-alkyl, optionally substituted C(═O)—C1-6-alkyl, optionally substituted C1-6-alkyl-C(═O), optionally substituted C2-10-alkenyl, optionally substituted C2-10-alkynyl, optionally substituted C3-8-carbocycle and optionally substituted heterocycle. Preferably, Y is selected from the group consisting of C1-6-alkyl, C2-10-alkenyl, C2-10-alkynyl, each of which may be optionally substituted. In a most preferred embodiment of compounds of formula D, Y is optionally substituted C1-6-alkyl biradical. It is particularly preferable that Y is optionally substituted C1-6-alkyl, such as a biradical of methyl, ethyl, n-propyl, isopropyl, n-butyl, isobutyl, sec-butyl, tert-butyl, pentyl, isopentyl, neopentyl and hexyl.
Thus, in a combination of preferred embodiment of compounds of formula D, a 3-substituted succinimide, substituted with a secondary amine, a tertiary amine or thioether (thioxide) wherein the amine or alkoxide is substituted with an optionally substituted C1-6-alkyl biradical. That is to say, that in this combination of preferred embodiments of compounds of formula D, the class is represented by D-i and D-ii. A particularly preferred embodiment of compound D is compound D-i.
The distal terminus of the substitution at the 3-position of compound D consists of the monoradical Z, which may be selected from the group consisting of optionally substituted aryl, optionally substituted heteroaryl, C3-9-carbocyle, heterocycle, H, ORZ, N(RZ)(R3), S—RZ, NO2, —CN, and halogen.
Z is selected from the group consisting of hydrogen, optionally substituted aryl, optionally substituted heteroaryl, optionally substituted C3-8-carbocyle, optionally substituted heterocycle, ORZ, N(RZ)(R3), S—RZ, preferably wherein Z is selected from the group consisting of hydrogen, optionally substituted heteroaryl, optionally substituted heterocycle and N(RZ)(R3), most preferably optionally substituted heterocycle and N(RZ)(R3), particularly an optionally substituted heterocycle.
In suitable embodiments of compound D, Z is selected from the group consisting of hydrogen, optionally substituted heterocycle, optionally substituted aryl, and optionally substituted C3-8-carbocycle. In one particularly interesting embodiment, Z is an optionally substituted heterocycle. In another particularly interesting embodiment, Z is hydrogen.
In the suitable embodiment Z is an optionally substituted heterocycle, such as a nitrogen-, oxygen-, or sulfur-containing heterocycle. Preferably, the heterocycle is a nitrogen-containing heterocycle. The heterocycle is preferably selected from the group consisting of maleimide, succinimide, hydantoin, dioxypiperazine, dihydrouracil, imidazole, pyrazole, pyrrole, oxazole, furazan, barbituric acid, thiobarbituric acid, and 3-alkoxyisoxazole, each of which may be optionally substituted.
In a combination of preferred embodiments, A is N(R2), Y is an optionally substituted C1-6-alkyl, and Z is hydrogen. The C1-6-alkyl may be optionally substituted, such as by an alkyl chain, as is demonstrated by compounds I-xii to I-xxxiv, wherein, for illustrative purposes only, Y is a C1-6-alkyl substituted by a C1-alkyl(methyl). It is to be understood that the C1-6-alkyl, and Y in general, may be optionally substituted otherwise such as by one or more higher alkyls, halogens, C1-6-alkoxides and hydroxyls.
In a further combination of preferred embodiments, A is N(R2), Y is an optionally substituted C1-6-alkyl, and Z is an optionally substituted heterocycle. In a particularly preferred embodiment, A is N(R2), Y is an optionally substituted C1-6-alkyl, and Z is maleimide or succinimide.
In a suitable embodiment of compound D, Z is selected from the group comprising of ORZ, N(RZ)(R3), S—RZ, wherein RZ is selected from the group consisting of hydrogen, optionally substituted C1-4alkyl, optionally substituted C2-5-alkenyl, optionally substituted C2-6-alkynyl, optionally substituted aryl, optionally substituted heteroaryl, optionally substituted heterocycle, and optionally substituted C3-C7-cycloalkyl. Preferably, RZ is selected from the group consisting of hydrogen, optionally substituted aryl, optionally substituted heteroaryl, optionally substituted heterocycle, and optionally substituted C3-C7-cycloalkyl. Most preferably, RZ is selected from the group consisting of optionally substituted heteroaryl and optionally substituted heterocyle, most RZ is an optionally substituted heterocycle.
In the suitable embodiment wherein RZ is an optionally substituted heterocycle, the heterocycle is preferably selected from the group consisting of maleimide, succinimide, hydantoin, dihydrouracl, imidazole, pyrazole, pyrrole, oxazole, furazan, barbituric acid, thiobarbituric acid, dioxopiperazine, and 3-alkoxyisoxazole, each of which may be optionally substituted.
In a combination of preferred embodiments of compounds of formula D, Z is N(RZ)(R3) and RZ is an optionally substituted heterocycle. Most preferably, RZ is a heterocycle selected from the group consisting of maleimide, succinimide, hydantoin, dioxopiperazine, imidazole, pyrazole, pyrrole, oxazole and furazan, particularly succinimide. Some suitable embodiments of compound I are illustrated by compounds I-ill to I-xi.
In the suitable embodiment wherein Z is N(RZ)(R3) and RZ is an optionally substituted heterocycle, N may be bonded to any position on said heterocyle, including to a heteroatom within said heterocycle.
In a further suitable embodiment, Z is N(RZ)(R3) and N together with R3 and RZ, form an optionally substituted heterocycle. In such an embodiment N is bonded to Y. Preferably, the heterocycle selected from the group consisting of maleimide, succinimide, hydantoin, thio-hydantoin, dioxypiperazine, dihydrouracil; imidazole, pyrazole, pyrrole, oxazole, furazan, barbituric acid, thiobarbituric add, 3-alkoxyisoxazole, quinoline, aminoacridine, and cytosine, each of which may be optionally substituted.
It should be noted that in the combination of interesting embodiments of formula D wherein A is N(R2), Z is N(RZ)(R3) and RZ is succinimide, such as within D-iii, the compound is a dimer of succinimide joined by a linker moiety of length determined by Y. This subclass of compounds showed surprising activity as a topoisomerase II catalytic inhibitor, as shown in Example 1.
The length of the substituent of compounds of formula D may be altered in part by means of the value of n, which may be any whole number but is preferably an integer ranging from 1 to 3, such as from 1 to 2, preferably 1.
Compounds of formula I, including compounds of formula D, may have the imide nitrogen as the free nitrogen (NH) or may be protected or derivatized with RN in a manner known to the person skilled in the art (in the illustrative structures D-iii to I-xii, the imide nitrogen is not defined for simplicity). In a suitable embodiment, RN and RM are independently selected from the group consisting of hydrogen, C1-6-alkyl, optionally substituted aryl, optionally substituted heteroaryl.
In a further interesting embodiment of the present invention, the imide nitrogen is derivatized so as to render the compounds of formula D suitable pro-drugs for administration. In suitable embodiment of the compounds, RN and RM are selected from the group consisting of hydrogen, CH2—N(R4)(R4), CH2—,OR4, CH2—SR4, CH2—O—C(═O)R4, CH2—O—C(═S)R4, most preferably CH2—N(R4)(R4), CH2—OR4, and CH2—O—C(═O)R4.
In particularly interesting embodiments of compounds of formula D, RN and RM are independently selected from the group consisting of hydrogen, optionally substituted C1-6-alkyl,
In a suitable embodiment of the present invention: the 4-position of the succimimide derivative is also substituted with an A-Y-Z unit as shown in formula D. the value of m may be any whole number, preferably ranging from 0 to 3, such as from 0 to 2, preferably 0 or 1, most preferably 0. In a suitable embodiment, m is 0 and Z′ is H.
Thus, in a combination of preferred embodiments of compounds of formula D, m is 0, Z′ is H, R1 is OE, n is 1, A is N(R2), Y is an optionally substituted C1-6-alkyl biradical, Z is N(RZ)(R3) and RZ is an optionally substituted heterocycle. In another combination of preferred embodiments, m is 0, Z′ is H, R1 is OE, n is 1, A is N(R2), Y is an optionally substituted C1-6-alkyl biradical, and Z is an optionally substituted heterocycle. The optionally substituted heterocycle is preferably selected from the group consisting of succinimide, imidazole, pyrazole, pyrrole, oxazole, furazan, hydantoin, and dihydrouracil, dioxopiperazine, each of which may be optionally substituted, most preferably an optionally substituted succinimide.
In an alternative combination of preferred embodiments of compounds of formula D, m is 0, Z′ is H, R1 is OE, n is 1, A is N(R2), Y is optionally substituted C1-6-alkyl biradical, and Z is H.
Illustrative examples of these combined preferred embodiments of compounds of formula D are depicted by structures of compounds of the formula D-xii, D-xiii, D-xiv, D-xv, each of which are suitable human topoisomerase II catalytic inhibitors;
wherein RN is selected from the group consisting of hydrogen, optionally substituted C1-8 alkyl, optionally substituted C2-10-alkenyl, optionally substituted C2-10 alkynyl, optionally substituted aryl, optionally substituted heteroaryl, optionally substituted heterocycle, optionally substituted C3-C7-cycloalkyl, CH2—N(R3)(R3), CH2—OR3, CH2—SR3, CH2—O—C(═O)R3, CH2—O—C(═S)R3, CH2—S—C(═O)R3, C(═O)(R3), C(═S)R3, —C(═S)—OR3, —C(═O)—SR3, C(═O)—N(R3)(R3), C(C═S)—N(R3)(R3); R is selected from the group consisting of hydrogen, halogen, optionally substituted C1-5 alkyl, optionally substituted C1-6 alkoxy, optionally substituted C2-5 alkenyl, optionally substituted C2-6 alkynyl, optionally substituted aryl, optionally substituted heteroaryl, optionally substituted heterocycle, and optionally substituted C3-C7 cycloalkyl; R2 is selected from the group consisting of hydrogen, optionally substituted C1-4-alkyl, optionally substituted C2-5-alkenyl, optionally substituted C2-6-alkynyl, optionally substituted aryl, optionally substituted heteroaryl, optionally substituted heterocycle, and optionally substituted C3-C7-cycloalkyl.
Compound D-xv, wherein R is hydrogen R2 is hydrogen, and RN is hydrogen, known as compound I-21, is tested in the Examples. Compound D-xv, wherein one R is methyl, the other R is hydrogen, R2 is hydrogen, and RN is hydrogen, known as compound I-112, is tested in the Examples.
As can also be seen from Example 1, maleimide was surprisingly found to have topoisomerase II catalytic inhibitory activity. Moreover, the 3-aminoalkyl-substituted succinimides were also found to have topoisomerase II catalytic inhibitory activity. Furthermore, “dimeric” compounds wherein two succinimide moieties are linked by an optionally substituted diamino alkyl chain were also found to have topoisomerase II catalytic inhibitory activity. The present inventors have demonstrated that an array of the maleimide derivatives, 3-substituted succinimides and “dimeric” compounds have topoisomerase II catalytic inhibitory activity. In a most preferred embodiment, compounds of formula I are selected from compounds of formula M.
As stated, an important aspect of the present invention relates to a method of treating diseases and disorders for which inhibition or pharmacologic modulation of the topoisomerase II enzyme produces a physiologically beneficial response in said disease or disorder comprising the step of administering an effective amount of a compound of formula I. Example 1 demonstrates the activity of selected compounds of formula I as a topoisomerase II catalytic inhibitor. Correspondingly, the use of a compound of formula I for the preparation of a medicament, for diseases or disorders for which inhibition or modulation of the topoisomerase II enzyme produces a physiologically beneficial response is an important aspect of the present invention. The use of a compound of formula M for the preparation of a medicament for diseases or disorders for which inhibition or modulation of the topoisomerase II enzyme produces a physiologically beneficial response is a particularly Important aspect of the present invention.
As stated, the topoisomerase II enzymes belong to a family of nuclear enzymes involved in the processing of DNA during the cell cycle. In short, they are able to introduce transient cleavage of both strands of the DNA double helix, thereby allowing the passage of another intact DNA double strand through the cleavage. The duration of the transient DNA break is very short. Topoisomerase II catalytic inhibitors are known to be useful in the treatment of tumours. Thus, a further aspect of the present invention relates to a method of treating a tumour in a mammal, such as a human, comprising administering to said mammal an effective amount of a compound of formula I. A method of treating a tumour in a mammal, such as a human, comprising administering to said mammal an effective amount of a compound of formula M is a particularly interesting aspect of the invention. Preferably, the anti-tumour effect results, at least in part, by inhibiting topoisomerase II enzyme. A related aspect of the present invention embodies the use of a compound of formula I for the preparation of a medicament for use in anti-cancer therapy. A preferred embodiment of this aspect relates to the use of a compound of formula M for the preparation of a medicament for use in anti-cancer therapy. Accordingly, the compounds of formula I, such as compounds of formula M, may be, in themselves, cytotoxic agents, anti-tumour agents or anti-cancer agents.
The compounds of the present invention may be particularly useful in the treatment of tumours such as hypoxic solid tumours. Compounds of the present invention are anticipated to be particularly useful in the treatment of malignant melanoma, breast cancer, leukaemia and small cell lung cancer. Compounds of the present invention may also be particularly useful for the treatment of tumours which are not especially enriched (poor) in their topoisomerase II concentration.
As stated, ICRF-187 is a topoisomerase II catalytic inhibitor. The present investigators have demonstrated that compounds of formula I are also topoisomerase II catalytic inhibitors. Topoisomerase II catalytic inhibitors such as ICRF-187 are useful for the prevention and treatment of accidental extravasation, such as due to topoisomerase poisons. It is anticipated that topoisomerase II catalytic inhibitors of formula I are useful for the prevention and treatment of accidental extravasation.
Thus, a further aspect of the present invention relates to a method for preventing or treating tissue damage due to extravasation, such as due to topoisomerase II poisons, including anthracyclines, in a patient receiving said treatment, by administering an effective amount of compound of formula I. A further aspect of the present invention relates to the use of a compound of formula I for the manufacture of an agent to prevent or treat extravasation.
In a suitable embodiment, the extravasation is the result of the administration of one or more topoisomerase II poisons. The topoisomerase poison responsible for the extravasation may be selected from the group comprising doxorubicin, daunorubicin, dactinomycin, epirubicin, bisantrene, pacitaxel, amsacrine, mitomycin C, vincristine, vinblastine, vindesine, liposomal anthracydines, mitoxantrone, esorubicin, menogaril, acalcinomycin, cisplatin, fluorouracil, etoposide and bleomycin.
Moreover, the use of the catalytic inhibitors of topoisomerase II of the present invention may enhance the anti-cancer treatment of classical poisons resulting in a broader therapeutic index for the classical poisons by either reducing the side effects (toxicity) or by enhancing the effect of the poison.
A compound of formula I may be combined with an array of chemotherapeutic agents to provide an effective treatment of a variety of cancers.
However, a particularly interesting aspect of the present invention relates to the use of a compound of formula I, such as a compound of formula D or M, preferably M, as an agent which, when combined with a topoisomerase II, poison, is effective in the treatment of cancer and to a method of providing anti-cancer therapy in a mammal, such as a human, comprising administering an effective amount of a combination of topoisomerase II poison and a compound of formula I, such as a compound of formula D or M, preferably M.
The combination treatment may involve the combining of one or more compounds of formula I, such as a compound of formula D or M, preferably M, with a chemotherapeutic agent be selected from the group comprising pacitaxel, doxorubicin, daunorubicin, dactinomycin, epirubicin, bisantrene, pacitaxel, amsacrine, mitomycin C, vincristine, vinblastine, vindesine, liposomal anthracyclines, mitoxantrone, esorubicin, menogaril, acalcinomycin, cisplatin, fluorouracil, etoposide and bleomycin, mithramycin, melphalan, carmustine, darcabazine, cytarbine, methotrexate, teniposide, L-asparaginase, alfa-interferon, interleukin 2 and other chemotherpeutic agents known the person skilled in the art, preferably pacitaxel, doxorubicin, daunorubicin, dactinomycin, epirubicin, bisantrene, pacitaxel, amsacrine, mitomydrn C, vincristine, vinblastine, vindesine, liposomal anthracyclines, mitoxantrone, esorubicin, menogaril, acaldnomycin, cisplatin, fluorouracil, etoposide and bleomycin.
Cancers considered to be especially suitable for the combination treatment may be selected from the group comprising malignant melanoma, breast cancer, leukaemia and small cell lung cancer.
A subclass of compounds of formula D, compounds of formula II have never been associated to having therapeutic potential. Thus, a further aspect of the present invention relates to a compound of formula II for use as medicament,
wherein Y is a biradical independently selected from of the group consisting of C1-6-alkyl, C(═O)—C1-6-alkyl, C1-6-alkyl-C(═O), C2-10-alkenyl, C2-10-alkynyl, C3-8-carbocycle, heterocycle, each of which may be optionally substituted; {dot over (X)} is selected from the group consisting of N(R2), S and O; RN is selected from the group consisting of hydrogen, optionally substituted C1-8 alkyl, optionally substituted C2-10-alkenyl, optionally substituted C2-10 alkynyl, optionally substituted aryl, optionally substituted heteroaryl, optionally substituted heterocycle, optionally substituted C3-C7-cycloalkyl, CH2—N(R3)(R3), CH2—OR3, CH2—SR3, CH2—O—C(═O)R3, CH2—O—C(═S)R3, CH2—S—C(═O)R3, C(═O)(R3), C(═S)R3, —C(═S)—OR3, —C(═O)—SR3, C(═O)—N(R3)(R3), C(C═S)—N(R3)(R3); R and R2 are independently selected from the group consisting of hydrogen, optionally substituted C1-6 alkyl, optionally substituted C2-5-alkenyl, optionally substituted C2-6 alkynyl, optionally substituted aryl, optionally substituted heteroaryl, optionally substituted heterocycle, and optionally substituted C3-C7-cycloalkyl.
In a preferred embodiment of compound II, X is selected from the group consisting of N(R2) and S, most preferably N(R2) as in compound IIa.
In a suitable embodiment, the 4-position of each of the succinimide derivative moieties is unsubstituted. That is to say, R is suitably hydrogen.
As was stated, in connection with compounds of formula I, derivatization of the imide nitrogen with RN in order to prepare pro-drugs is particularly interesting to the present investigators. RN may be selected from the group consisting of hydrogen, CH2—N(R4)(R4), CH2—OR4, CH2—SR4, CH2—O—C(═O)R4, CH2—O—C(═S)R4, most preferably CH2—N(R4)(R4), CH2—OR4, and CH2—O—C(═O)R4.
In particularly interesting embodiments of compounds of formula II, RN is selected from the group consisting of hydrogen,
The succinimide derivative moieties of compounds of formula II are spaced by a N(R2)—Y—N(R2), O—Y—O, S—Y—S, N(R2)—Y—O, N(R2)—Y—S, O—Y—S, O—Y—N(R2), S—Y—O, or S—Y—N(R2) moiety, wherein Y is a biradical independently selected from of the group consisting of optionally substituted C1-6-alkyl, optionally substituted C(═O)—C1-6-alkyl, optionally substituted C1-6-alkyl-C(═O) and optionally substituted C3-8-carbocycle. In a preferred embodiment of compounds of formula II, Y is an optionally substituted C1-6-alkyl.
A further aspect of the present invention relates to a subclass of compounds of formula I, termed formula III. These are novel compounds in themselves and have been found to have topoisomerase II catalytic inhibitory activity. Thus the present invention further relates to compounds of formula III
wherein RN is selected from the group consisting of hydrogen, CH2—N(R4)(R4), CH2—OR4, and CH2—O—C(═O)R4; A and A′ are independently selected from the group consisting of N(R4)(R5), S and O; n and m are independently selected whole numbers in the range of 0 to 8, Z and Z′ are selected from the group consisting of hydrogen, optionally substituted heterocycle and N(RZ)(R4) wherein RZ is an optionally substituted heterocycle; —OE is a carbonyl equivalent such as selected from the group consisting of ═O, ═S; —OR2, —SR2, dithiane, dioxolane and dioxane; R1 is selected from the group consisting of —OE, OR2, N(R2)(R2), S—R2, NO2, —CN, and halogen; R2 and R3 are independently selected from the group consisting of hydrogen, halogen, hydroxy, optionally substituted C1-6-alkyl, optionally substituted C1-6-alkoxy, optionally substituted C2-5-alkenyl, optionally substituted C2-6-alkynyl, optionally substituted aryl, optionally substituted heteroaryl, optionally substituted heterocycle, and optionally substituted C3-C7-cycloalkyl; and RZ, R4 and R5 are independently selected from the group consisting of hydrogen, optionally substituted C1-4 alkyl, optionally substituted C2-5 alkenyl, optionally substituted C2-6 alkynyl, optionally substituted aryl, optionally substituted heteroaryl, optionally substituted heterocycle, and optionally substituted C3-C7 cycloalkyl.
In a preferred embodiment of compounds of formula III, (CR2R3), is selected from the group consisting of optionally substituted C1-6-alkyl biradical, preferably optionally substituted C1-6-alkyl, such as an optionally substituted biradical of methyl, ethyl, n-propyl, isopropyl, n-butyl, isobutyl, sec-butyl, tert-butyl, pentyl, isopentyl, neopentyl and hexyl.
As stated in connection with compounds of formula I and II, in preferred embodiments of compounds of formula III, RN is selected from the group consisting of hydrogen,
In formula III, Z may be an optionally substituted heterocycle selected from the group consisting of succinimide, imidazole, pyrazole, pyrrole, oxazole, furazan, barbituric acid, thiobarbituric acid, dioxopiperazine, hydantoin, dihydrouracil, and 3-alkoxyisoxazole, each of which may be optionally substituted, preferably wherein Z is an optionally substituted heterocycle selected from the group consisting of succinimide, imidazole, pyrazole, pyrrole, oxazole, and furazan, each of which may be optionally substituted. Most preferably Z is an optionally substituted succinimide.
In formula III, Z is selected from the group consisting of hydrogen, optionally substituted heterocycle and N(RZ)(R4) wherein RZ is an optionally substituted heterocycle.
In a preferred embodiments, RZ is a heterocycle selected from the group consisting of succinimide, imidazole, pyrazole, pyrrole, oxazole, furazan, barbituric acid, thiobarbituric acid, dioxopiperazine, hydantoin, dihydrouracil, and 3-alkoxyisoxazole, each of which may be optionally substituted, preferably wherein RZ is an optionally substituted heterocycle selected from the group consisting of succinimide, imidazole, pyrazole, pyrrole, oxazole, and furazan, each of which may be optionally substituted. Most preferably RZ is an optionally substituted succinimide.
In a combination of preferred embodiment of compound of formula III, -A- is —N(R4)(R5)—, R1 is —OE and OE is ═O, m is 0 and Z′ is H. In a particularly preferred embodiment of compounds of formula III, A′-(CR2R3)m-Z is H, -A- is —N(R4)(R5)—, R1 is —OE and OE is ═O.
In a suitable combination of preferred embodiments of compounds of formula III, A′-(CR2R3)m-Z′ is H, -A- is —N(R4)(R5)—, R1 is —OE, OE is ═O, and Z is hydrogen.
In a suitable combination of preferred embodiments of compounds of formula III, A′-(CR2R3)m-Z′ is H, -A- is —N(R4)(R5)—, R1 is —OE, OE is ═O, and Z is an optionally substituted heterocycle.
In an alternative combination of preferred embodiments of compounds of formula III, A′-(CR2R3)m-Z, is H, -A- is —N(R4)(R5)—, R1 is —OE, OE is ═O, and Z is N(RZ)(R4) wherein RZ is an optionally substituted heterocycle.
In a further suitable combination of preferred embodiments, A′-(CR3R3)m-Z is H, -A- is —S, R1 is —OE, OE is ═O, and Z is N(RZ)(R4) wherein RZ is an optionally substituted heterocycle.
As stated, compounds of formula D-xii, D-xiii, D-xvi and D-xv were found to have surprising topoisomerase II inhibitory activity. Compounds of formula D-xii, D-xiii, D-xvi and D-xv are novel compounds. Compounds of formula D-xii, D-xiii, D-xvi and D-xv are a subclass of compounds of formula III and are considered a particularly interesting embodiment of compounds of formula III. Most preferably, R is preferably selected from the group consisting of hydrogen, halogen, hydroxyl, and optionally substituted C1-4-alkyl.
As is known to the person skilled in the art, salts of compounds of formula I, M, D, II and III, such as quaternary ammonium salts, are embodied in the present invention. Moreover, enantiomeric, diastereomeric and racemic forms of compounds of the invention are also anticipated.
A further aspect of the present invention relates to a pharmaceutical composition comprising at least one compound selected from the group consisting of formula I, M, D, II and III, with at least one pharmaceutically acceptable excipient or carrier. Most preferable are compositions comprising compounds of formula M.
A pharmaceutical composition, according to the present invention, may further comprise one or more chemotherapeutic agents selected from the group comprising pacitaxel, doxorubicin, daunorubicin, dactinomycin, epirubicin, bisantrene, pacitaxel, amsacrine, mitomycin C, vincristine, vinblastine, vindesine, liposomal anthracyclines, mitoxantrone, esorubicin, menogaril, acalcinomycin, cisplatin, fluorouracil, etoposide and bleomycin, mithramycin, melphalan, carmustine, darcabazine, cytarbine, methotrexate, teniposide, L-asparaginase, alfa-interferon, interleukin 2 and other chemotherpeutic agents known the person skilled in the art, preferably pacitaxel, doxorubicin, daunorubicin, dactinomycin, epirubicin, bisantrene, amsacrine, rnitomycin C, vincristine, vinblastine, vindesine, liposomal anthracyclines, mitoxantrone, esorubicin, menogaril, acalcinomycin, cisplatin, fluorouracil, etoposide and bleomycin.
In a particularly preferred embodiment, pharmaceutical compositions comprise one or more compounds of formula M and further comprise one or more topoisomerase II poisons. Pharmaceutical compositions may be suitably formulated for oral, mucosal, intravenous, transdermal, parenteral or intracranial administration.
The effect of the compounds of the present invention on the cytotoxicity of some of the classical poisons is illustrated in FIGS. 1 to 3 showing the results from the donogenic assays.
In
The effect of the compounds of the present invention on DNA damage conferred by classical poisons is illustrated on
As an example, the alkaline elution assay on
Clearly, these catalytic inhibitors of topoisomerase II are able to antagonise the SSBs induced by etoposide.
Pharmacological Assays
The in vitro and in vivo pharmacological assays used to characterise the compounds to be claimed as catalytic inhibitors of the topoisomerase II enzyme are as follows: Clonogenic assay, decatenation assay, alkaline elution, band depletion and plasmid cleavage assay. These assays cover a range of information and shall, as proof of concept of this class of compounds for the use as catalytic inhibitors of topoisomerase II, very briefly be described:
Clonogenic Assay
The information derived from the clonogenic assay is cytotoxicity. If a given compound is able to antagonize the cytotoxic effect caused by the interaction of cellular topoisomerase II and classical topoisomerase II poisons, the compound is classified as a catalytic topoisomerase II inhibitor (CI) For medical use, the catalytic inhibitors should only be cytotoxic in relatively high concentrations by themselves.
A 3-week clonogenic assay is used. Briefly, single cell suspensions (2×104 cells/mL) in RPMI 1640 supplemented with 10% fetal calf serum are exposed to the drugs for 1 h, washed twice in PBS at 37° C., and plated in triplicate in soft agar on top of a feeder layer containing sheep red blood cells. The number of cells is adjusted to obtain 2000 to 3000 colonies in the control dishes. Finally, the colonies are counted.
Decatenation Assay
The decatenation assay is a direct measurement of a given compounds inhibitory action on purified topoisomerase II enzyme. The general role of the topoisomerase II enzyme in living cells is to cause decatenation of catenated DNA during cell division. If a compound is able to inhibit this decatenation, the compound is an inhibitor of the topoisomerase II enzyme. While this assay is capable of determining whether a given compound is active against topoisomerase II, information concerning the exact mode of action is not provided.
Topoisomerase II catalytic activity is measured by kDNA decatenation. 3H labelled kDNA is isolated from Crithidia fasciculata (ATCC, Manassas, Va.) as described in (24). Briefly, relevant concentrations of the test compound in buffer (50 mM Tris-Cl, pH8, 120 mM KCl, 10 mM MgCl2, 1.0 mM ATP, 30 mg BSA/ml) and purified topoisomerase II α is incubated with 0.2 mg kDNA for 15 min at 37° C. in a final volume of 20 μl. After addition of stop buffer/loading dye mix (5% Sarkosyl, 0.0025% bromophenol blue, 25% glycerol), samples are loaded on 1% agarose/0.5% ethidium bromide gels and run in TBE buffer containing 0.5 mg/ml ethidium bromide at 100V for approximately 50 min and photographed under UV light. In addition, loading wells are cut out and scintillation counted to obtain numerical values. These values are then plotted against drug concentration to obtain dose-response curves enabling the determination of IC50 values for individual compounds.
Alkaline Elution
In alkaline elution, which is a whole cell assay (in vitro assay), the compounds are tested in cells for their ability to interfere with the formation of single strand DNA breaks (SSBS) induced by classical poisons e.g. etoposide and daunorubicin. This assay thus provides information concerning a given compounds ability to cause (or antagonize in the case of topoisomerase II catalytic inhibitors in the combination with classical topoisomerase II poisons) DNA damage in intact cells.
The assays for SSBs and for DPCs (DNA-protein cross-links) are performed according to Kohn et. al (23).
For measurement of single-strand breaks (SSBs), L1210 cells used as internal standard are exposed to 100 μM H2O2 for 60 min on ice, corresponding to an irradiation dose of 300 rad as described by Szmigiero and Studzian (25). OC—NYH cells are incubated in medium supplemented with the indicated drug at 37° C. for the specified periods, washed in 10 mL ice-cold PBS and then lysed on the filter (Nucleopore, 2.0 μM pore size) with 5 mL of SDS-EDTA lysis solution (2% SDS, 0.1 glycine and 0.025 M Na2EDTA) at pH 10, followed by addition of 1.5 mL SDS-EDTA lysis solution supplemented with 0.5 mg/mL proteinase K. Mixing of standard and experimental cells is done immediately prior to lysis. DNA was eluted with tetrapropyl-ammoniumhydroxide-EDTA, pH 12.1 containing 0.1% SDS at a rate of 0.125 mL/min. Fractions are collected at 20-min intervals for 2 h. Filters are treated with 400 μL 1 N HCl for 1 h at 60° C., cooled and 0.4 M NaOH is added prior to scintillation counting.
Compounds capable of antagonizing the DNA damage induced by classical topoisomerase II poisons such as etoposide are classified as topoisomerase II catalytic inhibitors.
Band Depletion
The band depletion assay is also related to the mode of action of the compounds at the enzyme level in intact cells. Incubation of the cell, with e.g. etoposide, reduces the amount of extractable topoisomerase II α enzyme in the cells (27). Thus by inhibiting religation, etoposide traps the enzyme on Its DNA substrate, leaving less freely available enzyme for salt extraction. Experiments with the catalytic inhibitor ICRF-187 (preincubated 1 h) has shown (8) that the compound is also able to induce a marked decrease (ATP-dependent) in the extractable amount of both topoisomerase II α and β isozymes. A correlation between these results and the mode of action of the bisdioxopiperazines acting by locking the homodimeric topoisomerase II in the form of a closed bracelet surrounding the DNA at the post-ligation step has been demonstrated.
OC—NYH cells are incubated for 1 h at 37 C in RPMI 1640 with 10% of fetal calf serum with the desired compounds for test. Thereafter, whole cell lysates were obtained at 4 C. Exponentially growing cells were harvested and washed in PBS. Cells are resuspended in 0.2 mL ELB-buffer (NaCl 0.25 M, NP40 0.1%, HEPES 50 mM, EDTA 5 mM) containing aprotinin 1 μg/ml, leupeptin 1 μg/ml, DTT 1M and PMSF 0.3 mM and lysed for 30 min. Pellets are spun down at 20000×g for 20 min. The protein concentration of the supernatants is measured, and the supernatants are diluted with an equal volume of glycerol.
After heating the nuclear extracts for 5 min at 95 C, the sample is immediately loaded on a 7% SDS-PAGE gel containing 5% glycerol. Thereafter, all steps are performed at RT. The separated proteins are transferred to Trans-Blot® Nitrocellulose, in a Mini Trans-blot® Electrophoretic Transfer Cell with 25 mM Tris, 192 mM glycine and 205 v/v methanol, pH 8.3 at 210 mA for 1 h. Membranes are blocked in 10% milk in TBS-T for 1 h and probed with either topoisomerase II as (1:1000) 1 h. Horseradish-peroxidase-conjugated donkey-antirabbit antibodies are used as secondary antibodies. The blots are developed using ECL™reagent 1 min and thereafter exposed on films for 5 min. Quantification of can be made by densitometric scanning.
While this assay in not capable of demonstrating directly whether a given compound is a topoisomerase II catalytic inhibitor (ICRF-187 and poisons both induce band-depletion) compounds capable of antagonizing the band depletion effect of classical topoisomerase II inhibitors such as etoposide are classified as topoisomerase II catalytic inhibitors.
Plasmid Cleavage Assay
The plasmid cleavage assay is capable of assessing wether a given compound stimulates topoisomerase II mediated DNA cleavage in the test tube. A modification of the protocol described in (Burden et al., 2001) is used. 350 ng purified human topoisomerase II α, 400 ng pUC18 DNA, and increasing concentrations of drugs were incubated for 6 min at 37° C. in 20 μl topoisomerase II cleavage buffer (10 mM TRIS-HCL pH 7.9, 50 mM NaCl, 50 mM KCl, 5 mM CaCl2, 1 mM EDTA, 15 μg/ml BSA and 1 mM Na2ATP, all from Sigma Chemical Co., St. Louis, Mo., USA). Next, the cleavable complex was trapped by adding 2 μl 10% SDS. After vigorous vortexing 1.5 μl 0.25 M EDTA and 2 μl proteinase K (0.8 μg/ml) in proteinase buffer (50 mM Tris-HCL pH=7.9, 1 mM CaCl2) was added and the samples vortexed. After a 30 min incubation at 45° C., 5 μl loading buffer (5% Sarkosyl, 0.0025% bromophenol blue, 25% glycerol) was added and the samples were exposed to 70° C. for 5 min. Next, samples were run through a 0.8 % agarose gel in 1× TAE buffer for three hours at 5 V/cm to separate different topological forms of plasmid DNA. Finally the gels were strained in distilled water containing 10 μg/ml ethidium bromide for 15 min followed by de-strained in distilled water for one hour before they were photographed in UV light. While some classes of topoisomerase II catalytic inhibitors like the bisdioxopiperazine compounds are not capable of antagonizing the effect of classical topoisomerase II poisons in this assay, any compound capable of doing so such as Maleimide and NEM is classified as a topoisomerase II catalytic inhibitor. Further, compounds not capable of stimulating topoisomerase mediated DNA cleavage while being active in the decatenation assay are also classified as topoisomerase II catalytic inhibitors.
Pharmacological Activity of Selected Compounds
The compounds to be claimed as novel catalytic inhibitors of topoisomerase II have been tested in the pharmacological assays mentioned above. Pharmacological data of selected compounds to be claimed are given below together with a brief explanation of the results. This is to verify the use as catalytic inhibitors of this class of compounds. Data are shown for the bisdioxopiperazine ICRF-187 (for comparison) as well as for the compounds I-21, I-112 and maleimide.
*)At a concentration of poison, here Idarubicin, of 0.01 μM, ICRF-187 (500 μM) is capable of protecting the cells so as to obtain 80% of survival (maximum protection at the given dose).
The + indicates, that the protection. i.e. log(number of surviving cells) is about 1.
Compounds of the invention may be prepared by the following synthesis:
General
Maleimides may be prepared in a one-step reaction from readily available anhydrides when treated with a HMDS/methanol reagent in a DMF solution at room temperature.
TT0043
Compound TT0043 has been synthesised using the general procedure using citraconic anhydride as starting material.
M-xii
Compounds of the Type M-xii (R6=Me as an example) is made using 3-methyl maleic anhydride and ethanol amine as starting materials. Ring closure using acetic anhydride affords the primary alcohol. The alcohol can be converted to various ethers or esters using conventional methods.
M-xiii
The synthesis of the compounds of formula M-xiii was done in a series of reactions with maleimide as starting material. Initial bromination of the double bond gives 3-bromo-maleimide. Subsequent protection of the carbonyl groups followed by n-BuLi and formalin and deprotection results in 3-hydroxymethyl-maleimide. This compound gives rise to a number of reactions. This alcohol can be converted to various ethers or esters using conventional synthetic methods.
Compound (3) can be made, as described above, from a substituted maleic anhydride and ethanol amine. Ring closure to the maleimide structure affords a compound (primary alcohol) which can, upon Mitsunobu reactions using appropriate substituted phenols, give the wanted structure.
Compounds of the Type M-i to M-vii
Compounds of the type M-i to M-vii may be prepared as described for compounds of the type M-xiii using a Mltsunobu coupling reaction to the amino-substituted ring moiety (such as aniline).
Compound M-i was prepared in the following manner:
The primary alcohol (1-(2-Hydroxy-ethyl)-3-methyl-pyrrole-2,5-dione) the synthesis of which is described above, is converted to an alkyl bromide using conventional methods. This bromide can be coupled to various amines affording the structures mentioned above. Reaction of this bromide with, as an example, diethyl amine, gives the compound M-i.
Compound M-ii to M-vi were prepared as described for M-I using instead cytosine, adenine, hydantoine, thiohydantoine imidazole, benzothiazole, aminoacridin or quinoline can give the desired compounds.
6.11 g Maleimide (63 mmol) was dissolved in absolute ethanol (75 ml). 2 ml Ethylendiamine (30 mmol) was quickly added at RT. After approximately 5 min., a white precipitate appeared. After 18 hours, the product was collected by filtration, yielding 1.13 g (14.8%) of the title compound.
0.49 g Maleimide (5 mmol) was dissolved in freshly distilled THF (10 ml). 167 μl Propylene-1,3-diamine (2 mmol) was added drop wise to the solution. After a short while, the mixture became turbid. After 2 hours, the mixture was evaporated to give an oil. The product was purified by flash chromatography (20% methanol/DCM) to yield 0.35 g (1.3 mmol, 64%) of N,N′-di-(pyrroidine-2,5-dione-3-yl)-propylene-1,3-diamine as an oil. 1H NMR (300 MHz, DMSO-d6) δ 11.06 (s, 2H, 2×imid), 3.63 (dd, 2H, 2×COCH(CH2)N), 2.81 (dd, 2H, 2×COCHHCH), 2.70 (m, 2H, 2×NCHHCH2), 2.50 (m, 2H, 2×NCHHCH2), 2.33 (dd, 2H, 2×COCHHCH), 1.52 (m, 2H, CH2CH2CH2). 13C NMR (75.5 MHz, DMSO-d6) δ 180.0, 177.1 (C2′, C5′), 57.1 (C3′), 44.9 (C1, C3), 37.0 (C4′), 29.9 (C2). FAB+269.13.
0.37 g n-Butyl amine (5 mmol) was dissolved in ethyl acetate (5 ml). The solution was cooled to 0° C. and 0.48 g maleimide (5 mmol) dissolved in ethyl acetate (15 ml) was added drop wise. After 18 hours, the solvent was evaporated and the product purified by flash chromatography (5% methanol/DCM) to yield 0.82 g (4.82 mmol, 96%) of 3-N-butylamino-pyrrolidine-2,5-dione as an oil. 1H NMR (300 MHz, CDCl3) δ 3.82(dd, 1H, COCH(CH2)N), 2.95 (dd, 1H, COCHHCH), 2.55-2.73 (m, 3H, NCH2CH2, COCHHCH), 1.49 (m, 2H, CH2CH2CH2), 1.38 (m, 2H, CH2CH2CH3), 0.92 (t, 3H, CH3).
0.30 g isopropyl amine (5 mmol) wasp dissolved in ethyl acetate (5 ml). The solution was cooled to 0° C. and 0.48 g maleimide (5 mmol) dissolved in ethyl acetate (15 ml) was added drop wise. After 48 hours, the solvent was evaporated and the product purified by flash chromatography (5% methanol/DCM) to yield 0.73 g (4.67 mmol, 93%) of 3-N-isopropylamino-pyrrolidine-2,5-dione as an oil. 1H NMR (300 MHz, CDCl3) δ 3.87 (dd, 1H, COCH(CH2)N), 2.92-2.99 (m, 2H, COCHHCH, NCH(CH3)2), 2.95 (dd, 1H, COCHHCH), 1.11 (t, 3H, CH3).
A solution of 3,4,5,6-tetrahydrophtalic anhydride (330 mg, 2.17 mmol) in DMF (5 ml) was treated with a mixture of HMDS (4.6 ml, 21.7 mmol) and methanol (0.5 ml, 10.8 mmol). After 16 h at RT the mixture was poured into water and extracted with ethyl acetate. The combined organic layers were washed with water (3×12 ml), dried (MgSO4), and filtered. Purification by column chromatography using a gradient of 1:1 to 3;1 EtOAc;hexane to give 158.3 mg (48%) of 2: 1H NMR (300 MHz, DMSO-d6) δ 10.47 (broad s, 1H, NH), 2.88 (m, 4H), 2.72 (m, 4H).
A solution of citraconic anhydride (3.74 g, 33.4 mmol) and diethyl ether (4 ml) was placed in a 250 ml three-necked flask provided with a reflux condenser. A solution of aniline (3.11 g, 33.4 mmol) and ethyl ether (3 ml) was added drop wise. The resulting thick suspension as stirred at RT for 1 h and was then cooled in an ice bath. Filtration and drying of the product in vacuo gave 6.31 g (92%) of 3-methyl-3-phenylcarbamoyl-acrylic acid, which as used without further purification. A solution of crude 3-methyl-3-phenylcarbamoyl-acrylic acid (3.00 g, 14.6 mmol), acetic acid (30 ml) and anhydrous sodium acetate was dissolved by swirling and heating in an oil bath for 30 minutes. The reaction mixture was cooled to RT and was poured into 30 ml of ice water. The product precipitated. Filtration, washing of crystals using cold water (3×25 ml), cold n-heptane, drying in vacuo and purification by column chromatography (ethyl acetate) gave TT0048 (601 mg (21%) as white needles 1H NMR (250 MHz, DMSO-d6) δ 7.40 (m, 2H), 7.21 (m, 2H), 7.00 (m, 1H), 6.80 (m, 1H), 2.06 (broad s, 3H). LCMS: 188 (M+1).
3-Butylcarbamoyl-acrylic acid (864 mg; 6.047 mmol) was dissolved in acetic anhydride (9 ml) containing sodium acetate (800 mg). The solution was heated to reflux for 30 min, cooled to RT and ice-cold water (30 ml) was added. The mixture was stirred for 10 min, extracted (ethyl acetate×3), dried (MgSO4), evaporated in vacua to afford the crude product (810 mg). The residue was purified by column chromatography (EtOAc), and gave the title compound TT0051 (460 mg, 60%) as an oil. 1H NMR (300 MHz, CDCl3) δ 6.70 (s, 2H), 3.52 (t, 2H), 1.6 (m, 2H), 1.3 (m, 2H), 0.95 (t, 3H). LC-MS: 154 (M+1).
Maleic anhydride (3.02 g, 30.6 mmol) was dissolved in THF (5 ml). 4-Methoxy-phenylamine (4 ml, 30.6 mmol) was added, and the mixture was heated to reflux for 2 h. The resulting suspension was cooled to RT, filtered, washed with cold THF (2×10 ml), and dried in vacua to give TT0006 (5.68 g, 85%) 1H NMR (300 MHz, DMSO-d6) δ 9.40 (broad s, 1H, NH), 7.24 (d, 2H), 6.90 (d, 2H), 6.45 (d, 1H, J=12 Hz), 6.26 (d, 1H, J=12 Hz), 4.32 (d, 2H, J=5 Hz), 3.73 (s, 3H).
| Number | Date | Country | Kind |
|---|---|---|---|
| PA 2001 00522 | Mar 2001 | DK | national |
| Number | Date | Country | |
|---|---|---|---|
| 60279459 | Mar 2001 | US |
| Number | Date | Country | |
|---|---|---|---|
| Parent | 10108979 | Mar 2002 | US |
| Child | 11557631 | Nov 2006 | US |
