The present invention relates to a support, a printed material and a reagent kit having an enzyme fixed thereon, a method for preparing the support, a method for storing an enzyme, and a method for restoring an enzyme.
Enzymes are proteins having catalytic activities and are involved in various biological reactions. Thus, enzymes contribute to the maintenance of life.
Enzymes are unstable at room temperature in the presence of moisture. Hence, enzymes are stored in a freeze-dried form or stored in a liquid containing a stabilizing agent at temperatures of −20° C. or below.
Polymerase chain reaction (PCR) is a reaction for the amplification of a nucleic acid, which is catalyzed by an enzyme called “a DNA polymerase”. A DNA polymerase is usually stored in a buffer at a temperature of −20° C. For this storage, a freezer is needed. When the enzyme is delivered from a supplier to a user, it is packaged in a container such as a container made of foamed polystyrene together with dry ice. These storage/delivery systems require specialized facilities and operations and, therefore, they are complicated and costly.
The object of the present invention is to provide a simple method for storing an enzyme.
The present inventors have found that, when a DNA polymerase is fixed on a support as a mixture with trehalose for storage purpose and PCR is then performed using the support, the PCR reaction successfully proceeds. Based on this finding, the present invention has been accomplished.
The subject matters of the present invention are as follows.
The present invention also provides a method for storage of an enzyme in the form of being fixed on a support as a mixture with a protecting agent for the enzyme.
The present invention also provides a method for amplification of a nucleic acid, comprising: placing a support as recited in item (7) in a liquid to leach out a DNA polymerase and at least one member selected from the group consisting of a nucleic acid which serves as a template, primers for amplifying the nucleic acid and a buffer for the amplification reaction for the nucleic acid from the support; and performing the nucleic acid amplification reaction using the DNA polymerase and the nucleic acid which serves as a template and/or the primers.
Hereinbelow, the present invention will be described in detail.
The present invention provides a support having an enzyme and a protecting agent for the enzyme fixed thereon.
The enzyme may be any one as long as it has any catalytic activity. Examples of the enzyme include, but are not limited to, a DNA polymerase, an RNA polymerase, a reverse transcriptase, an RNase, a restriction enzyme, a methylase, a modifying enzyme, a ligase, a protease, a kinase, a phosphatase, a transferase, a glycosilase, a topoisomerase and a clonase.
The protecting agent may be any one as long as it can protect an enzyme from drying and store the enzyme stably. Examples of the protecting agent include trehalose and derivatives thereof, polysaccharides, PEG, dextran, Ficol, glycerol, surfactants, and PVA and derivatives thereof. Trehalose and derivatives thereof are particularly effective.
The protecting agent may be a commercially available product or may be synthesized according to any known method.
Trehalose is a non-reductive disaccharide composed of two 1,1-bonded D-glucose molecules and has three types of isomers: α, α-, α, β- and β,β-isomers, depending on the bonding manner.
Examples of the derivatives of trehalose include, but are not limited to, acid esters (e.g., fatty acid esters such as laureate, oleate, linoleate, linolenate, stearate, palmitate and myristate; carboxylates such as acetate and benzoate; and sulfate); alkyl ethers (e.g., ethers with C8-25 alkyls); halides, nitrogen-containing derivatives and sulfur-containing derivatives of trehalose.
Trehalose and derivatives thereof are commercially available, but may be produced by any known method. The methods for production of trehalose and derivatives thereof can be found in, for example, “Developments in Food Carbohydrates”, edited by C. K. Lee, issued by Applied Science Publishers, pp. 1-89, 1980; “Chemical and Pharmaceutical Bulletin”, K. Yoshimoto et. al., vol. 30, No. 4, pp. 1,169-1, 174, 1982; and Japanese Patent Application Laid-open No. 8-157491.
The protecting agent may be mixed with the enzyme in an amount of 10−5 to 101 M/U enzyme, preferably 10−4 to 10−1 M/U enzyme.
On the support, an enhancer for enzymatic reaction may also be fixed. The enzymatic reaction enhancer may be any substance as long as it has an effect of enhancing the desired enzymatic reaction. The effect of enhancing the desired enzymatic reaction includes an effect of preventing the inhibition of the desired enzymatic reaction. Examples of the enzymatic reaction enhancer include, but are not limited to, sodium oxalate, potassium oxalate, sodium malonate, sodium maleate, dimethyl sulfoxide, betaines, glycerol, albumin, surfactants (e.g., Tween 20, Triton X100 and NP40), polyamines (e.g., ethylenediamine, trimethylenediamine, spermine, spermidine, diethylenetriamine, triethylenetetramine, tetraethylenepentamine, pentaethylenehexamine, 1,4-bis(3-aminopropyl)-piperazine, 1-(2-aminoethyl)piperazine, 1-(2-aminoethyl)piperidine, 1,4,10,13-tetraoxa-7,16-diazacyclooctadecane and tris(2-aminoethyl)amine), saccharides (e.g., glucose, fructose, galactose, maltose, sucrose, lactose and polysaccharides), sulfated polysaccharides and salts thereof (e.g., heparin, dextran sulfate), dithiothreitol, polyanions (e.g., DNA, RNA), polyhydric alcohols (e.g., aliphatic polyhydric alcohols such as ethylene glycol, propylene glycol, butanediol, hexanediol, octanediol, glycerin, sorbitan, trimethylol propane and neopentylglycol, diethylene glycol, triethylene glycol, polyethylene glycol and polypropylene glycol), ammonium sulfate and quaternary ammonium salts (e.g., hexadecyltrimethylammonium bromide, hexadecylpyridinium chloride, hexadimethrine bromide, hexafluorenium bromide and methylazolinium bromide). The enzymatic reaction enhancer includes, for example, Ampdirect® (Shimadzu Corporation), which is effective for enhancement of reactions with a DNA polymerase.
The enzymatic reaction enhancer may be fixed on the support in an appropriate amount. For example, a polyamine may be fixed on the support so that the polyamine is present in a reaction solution at a concentration of about 10 to 0.01 mM, preferably 2 to 0.5 mM. The enzymatic reaction enhancer may be fixed on the support in the same or different position as or from that of the mixture of the enzyme and the protecting agent.
The support may be any one as long as it can fix thereon the mixture of the enzyme and the protecting agent. Examples of the support include, but are not limited to, paper such as 60MDP paper (a product by Mishima Paper Co., Ltd., Japan), copy paper, woodfree paper, mechanical paper, kent paper, drawing paper, craft paper, paper for inkjet printing, tracing paper, Japanese paper, board paper, filter paper; glass substrates; silicon substrates; beads; column fillers; silica gel; nitrocellulose membrane; nylon membrane; and PVA membrane.
The support may have a thickness of 1 mm or less, for example. With a very small thickness (for example, about 0.1 mm), the workability of the support can be improved even if a number of enzyme- and protecting agent-fixed supports are stacked for distribution purposes, because the supports are not so bulky.
In addition to the enzyme and the protecting agent, the support may further comprise other components fixed thereon, such as a polynucleotide (e.g., DNA, RNA, a derivative or modified form thereof), an oligonucleotide (e.g., DNA, RNA, a derivative or modified form thereof), a protein (e.g., an antibody, a hormone), a polypeptide, an oligopeptide, a polysaccharide, an oligosaccharide, PNA, a low molecular compound (e.g., EDTA, a salt contained in a PCR buffer composition, Mg2+, a dNTP mixture) and a mixture thereof. The components other than the enzyme and the protecting agent may be fixed on the support in the same or different position as or from that of the mixture of the enzyme and the protecting agent. In particular, it is preferred that an aptamer for the enzyme be also fixed on the support. Accordingly, the present invention provides a support comprising an enzyme and an aptamer for the enzyme fixed thereon.
In one preferred embodiment of the present invention, in addition to the DNA polymerase and the protecting agent for the DNA polymerase, the support may further comprise primers for amplifying a nucleic acid of interest by nucleic acid amplification reaction using the DNA polymerase. The support of this type can be used in genotyping and identification of species. The support may further comprise an enhancer for the enzymatic reaction.
In another preferred embodiment of the present invention, in addition to the DNA polymerase and the protecting agent for the DNA polymerase, the support may further comprise at least one member selected from the group consisting of a nucleic acid which serves as a template for a nucleic acid amplification reaction (e.g., PCR) using the DNA polymerase, a primer for amplifying the nucleic acid, and a buffer for the nucleic acid amplification reaction. The support may also comprise an enhancer for enzymatic reaction.
For example, when a DNA polymerase is fixed on paper (support) for storage purpose, in addition to the DNA polymerase and the protecting agent, the paper may further have a set of primers (oligonucleotides), DNA which serves as a template for PCR reaction (which may be synthetic single- or double-stranded DNA or a vector having cDNA cloned therein), an aptamer for the DNA polymerase (functional RNA), components to be contained in a PCR reaction solution (i.e., Tris-HCl, KCl, MgCl, a dNTP mixture, etc.), EDTA and the like fixed thereon. In this case, fixation of these components may be achieved by any one of the following procedures: (1) the DNA polymerase, the protecting agent and the primer set are fixed together on the paper as a single spot, and the DNA as a template for PCR reaction, Tris-HCl and EDTA are fixed together on the paper as a separate single spot; (2) the DNA polymerase, the protecting agent, the primer set and, if required, an aptamer for the DNA polymerase are fixed together on the paper as a single spot; or (3) all of the components required for PCR reaction (i.e., DNA as a template for PCR reaction, the DNA polymerase, the primer set, Tris-HCl, KCl, MgCl, a dNTP mixture and the like and, if required, an aptamer for the DNA polymerase) together with the protecting agent are fixed on the paper as a single spot. For ease of distinction of the component (e.g., a DNA polymerase) spotted on paper, the component to be spotted may be mixed with a dye. Examples of the dye include, but are not limited to, cresol red, bromophenol blue and xylene cyanol.
The amount of the enzyme to be fixed on the support may be properly selected so that the desired enzymatic reaction can be achieved. For example, for PCR-reaction, 5 ng or more of a DNA polymerase may be fixed per spot.
A support having a mixture of an enzyme and a protecting agent for the enzyme fixed thereon can be prepared in the following manner. First, a mixed solution of an enzyme and a protecting agent is prepared. The mixing ratio between the enzyme and the protecting agent is as described above. The solvent is preferably water. The mixed solution may further contain any one of the components other than the enzyme and the protecting agent as described above. Next, the mixed solution of the enzyme and the protecting agent is applied onto a support. For example, in the case where the support is paper, the mixed solution can be spotted on the paper using a syringe, a 96 pin-tool (Multi 96-multiblot replicator VP409, Bio Medical Science Inc., US), a disposable-type pin-tool or the like. The support is then dried to fix the mixture of the enzyme and the protecting agent thereon. Preferably, the support having the mixture of the enzyme and the protecting agent fixed thereon contains substantially no moisture.
By fixing an enzyme on a support as a mixture with a protecting agent for the enzyme as described above, the enzyme can be stored stably. As for the storage conditions, the support is preferably stored at room temperature under light shielding conditions while avoiding high humidities. In the case where the enzyme is a DNA polymerase, for example, when the DNA polymerase is stored at room temperature after being fixed on 60MDP paper as a mixture with trehalose, storage life of at least 6.5 months has been confirmed (the storage test is now being carried on).
For restoration of an enzyme fixed on a support as a mixture with a protecting agent for the enzyme as described above, the support having the mixture of the enzyme and the protecting agent fixed thereon may be immersed in a liquid to leach out the enzyme into the liquid. The liquid to be used for the immersion of the support may be any one as long as it enables the restoration of the enzyme. Examples of the liquid includes, but are not limited to, water and an aqueous solution containing an ingredient other than water. In the case where the enzyme fixed on a support is a DNA polymerase, for example, the liquid to be used for the immersion of the support is preferably water, a PCR reaction solution (i.e., an aqueous solution containing Tris-HCl, KCl, MgCl, a dNTP mixture and the like) or the like. The immersion may be performed at room temperature under atmospheric pressure for 1 to 3 minutes.
When a DNA polymerase is fixed on a support, the support may be placed in a liquid to leach out the DNA polymerase from the support and nucleic acid amplification reaction may be then performed using the leached-out DNA polymerase to amplify a nucleic acid.
The present invention also provides a printed material comprising a support having an enzyme and a protecting agent for the enzyme fixed thereon.
The printed material includes, but is not limited to, complete books (e.g., textbooks), handbooks, catalogues, journals, magazines, articles, booklets, minibooklets, leaflets, pamphlets, reports, posters, cards and labels.
Exemplary types of the printed material include the following: 1) an encyclopedia-like all-inclusive type (e.g., FANTOM clone, human metabolome); 2) a volume-separated type by item (e.g., function, organ); 3) a small volume type by subdivided subjects or contents which consists of one to several pages (e.g., loose-leaf type); and 4) a card type which is intended to have a smaller number of attachments.
The present invention also provides a reagent kit comprising a support having an enzyme and a protecting agent for the enzyme fixed thereon.
The reagent kit according to the present invention can be used as a nucleic acid amplification reaction (e.g., PCR) kit, a protein production kit, an antibody kit and other types of kits for use in a variety of experiments, tests, diagnoses and the like.
The reagent kit according to the present invention may be in the form of a printed material as described above. Other embodiments of the reagent kit are shown in FIGS. 6 to 9.
Hereinabove, the present invention is described with reference to several embodiments of the combination of a DNA polymerase and DNA. However, the invention is not limited to these embodiments and applicable to a variety of enzymes.
In this specification, it is noted that the mark “-” means a numerical range in which the numerical numbers given before and after the mark are included in the range as the minimum value and the maximum value, respectively.
According to the present invention, a simple method for storing an enzyme is provided.
This specification includes part or all of the contents as disclosed in the specification and/or drawings of Japanese Patent Application No. 2003-339542 based on which the present application claims priority.
Hereinbelow, the present invention will be described in great detail with reference to the following examples. However, the examples are illustrative only and the scope of the invention is not limited to these examples.
DMA Book Having Spots of cDNA Clone and Polymerase Thereon
<Synthesis of Primers>
A set of primers having the following sequences were synthesized according to a conventional method.
Primer Set 1:
<Preparation of cDNA Solution>
pFLC vector, into which murine malate dehydrogenase cDNA (Clone ID: 1500012M15, 1758 bp) having the following nucleotide sequence collected from the Riken clones (http://fantom.gsc.riken.go.jp/) had been cloned
<Preparation of [Polymerase+Primer] Solution>
KOD plus polymerase (Toyobo Engineering Co., Ltd., Japan), trehalose and the primer set 1 were mixed together to prepare a solution having the final concentrations of 25 U/μl of KOD plus DNA polymerase, 0.1 M of trehalose and 2 μM of primer set 1.
<Spotting of DNA>
The cDNA solution and the [polymerase+primer] solution were spotted on a sheet of 60MDP paper (Mishima Paper Co., Ltd., Japan) using a 96 pin-tool (Multi 96-multiblot replicator VP409, Bio Medical Science Inc., US) so that the positions and the types of the spots could be identified, as shown in
<Recovery and Amplification of DNA>
The spotted paper was dried at room temperature for at least 30 minutes. Thereafter, two 4 mm×4 mm pieces were cut out from the 60MDP paper so that each piece contained the spotted cDNA or [polymerase+primer] and then placed in a PCR microtube. The tube was added with 25 μl of a PCR reaction solution (10 mM Tris-HCl, pH 8.3, 50 mM KCl, 5.3 mM MgCl, 200 μM each dNTP) and PCR was run under the following conditions:
2 min at 94° C.;
29 cycles of (1 min at 94° C., 1 min at 55° C., 75 sec at 68° C.); and then
15 min at 74° C.
After the reaction was completed, a proper amount of the reaction solution was removed from the tube and then subjected to 1% agarose gel electrophoresis. The results are shown in
#Experiment of [Aptamer+Polymerase] Using Lutenizing Hormone Gene
<Synthesis of Primers>
Primers having the following sequences were synthesized according to a conventional method.
Primer set 1 (a primer set for amplification of human lutenizing hormone gene exon 1):
Primer sets 2 (a primer set for amplification of human lutenizing hormone gene exon 2):
<Synthesis of Aptamer>
An oligonucleotide having the following sequence, which is a known aptamer for Taq DNA polymerase (Yun Lin, Sumedha D. Jayasena, Inhibition of Multiple Thermostable DNA Polymerases by a Heterodimeric Aptamer, Journal of Molecular Biology (1997), Vol. 27, Issue 1, pages 100-11), was synthesized by a conventional method.
<Preparation of [Primer+Aptamer+Polymerase] Solution>
Two kinds of spotting solutions were prepared.
The above primer sets, the aptamer for Taq DNA polymerase and Taq DNA polymerase were mixed together to prepare a solution having the final concentrations of 2 μM of the primer sets, 2 μM of the aptamer for Taq DNA polymerase, 25 U/μl of Taq DNA polymerase and 0.1 M trehalose. Another solution having the same composition except that the aptamer for Taq DNA polymerase was eliminated was also prepared.
<Spotting of DNA>
Each of the [primer+aptamer+polymerase] solutions prepared as described above was spotted on a sheet of 60MDP paper (Mishima Paper Co., Ltd., Japan) using a 96 pin-tool (Multi 96-multiblot replicator VP409, Bio Medical Science Inc., US) so that the position and the type of the spot could be identified, as shown in
<Amplification of DNA>
The spotted paper was dried at room temperature for at least 30 minutes. Thereafter, a 4 mm×4 mm piece was cut out from the 60MDP paper so that the piece contained the spotted area and then placed in a PCR microtube. The tube was added with 25 μl of a PCR reaction solution (10 mM Tris-HCl, pH 8.3, 50 mM KCl, 5.3 mM MgCl, 200 μM each dNTP) and 50 ng of template DNA (human genomic DNA; BD Biosciences Clontech, US), and PCR was run under the following conditions:
3 min at 94° C.;
50 cycles of (30 sec at 94° C., 30 sec at 40° C., 30 sec at 72° C.); and then
15 min at 72° C.
After the reaction was completed, a proper amount of the reaction solution was removed from the tube and then subjected to 1% agarose gel electrophoresis. The results are shown in
DMA Book Having Spots of Riken cDNA Clone+PCR Solution Thereon
<Synthesis of Primers>
A set of primers having the following sequences were synthesized according to a conventional method.
Primer set 1:
<Preparation of cDNA Solution>
pFLC vector, into which any one of murine malate dehydrogenase cDNA (Clone ID: 1500012M15, 1758 bp), murine isocitrate dehydrogenase (NADP) (Clone ID: 1500012E04, 2440 bp), murine isocitrate dehydrogenase (NAD) (Clone ID: E030024J03, 2160 bp) and murine oxoglutarate dehydrogenase (Clone ID: E430020N12, 3554 bp) having the following nucleotide sequences collected from the Riken clones (http://fantom.gsc.riken.go.jp/) had been cloned (
<Preparation of [cDNA+Primer+Aptamer+Polymerase+PCR Buffer Composition] Solution>
The cDNA, the primer set 1, the aptamer for Taq DNA polymerase and Taq DNA polymerase were mixed together to prepare a solution having the final concentrations of 5 μM of the primer set 1, 5 μM of the aptamer for Taq DNA polymerase, 50 U/μl of Taq DNA polymerase, 0.1 M trehalose, 250 mM Tris-HCl (pH 8.3), 1.25 M KCl, 132.5 mM MgCl and 5 μM of each dNTP.
<Spotting of DNA>
Each of the solutions prepared as described above was spotted on a sheet of 60MDP paper (Mishima Paper Co., Ltd., Japan) using a 96 pin-tool (Multi 96-multiblot replicator VP409, Bio Medical Science Inc., US) so that the position and the type of each spot could be identified, as shown in
<Amplification of DNA>
The spotted paper was dried at room temperature for at least 30 minutes. Thereafter, four 4 mm×4 mm pieces were cut out from the 60MDP paper so that each piece contained the spotted area and then placed in a PCR microtube. The tube was added with 25 μl of water, and PCR was run under the following conditions:
2 min at 94° C.;
29 cycles of (1 min at 94° C., 1 min at 55° C., 75 sec at 68° C.); and then 15 min at 74° C.
After the reaction was completed, a proper amount of the reaction solution was removed from the tube and then subjected to 1% agarose gel electrophoresis. The results are shown in
After the reaction was completed, a proper amount of the reaction solution was removed from the tube and then subjected to 1% agarose gel electrophoresis. The results are shown in 108. Bands observed at the positions around 184 bp and 343 bp were considered to be the desired DNA fragments of exons 1 and 2, respectively. It was demonstrated that a desired fragment could be amplified by PCR from the template DNA by using the primers fixed on the 60MDP paper. Comparison was made between the samples with and without the aptamer for Taq DNA polymerase, and it was found that the reaction with the aptamer could inhibit the non-specific amplification.
<Preparation of cDNA Solution>
pFLC vector, into which the same murine malate dehydrogenase cDNA clone (Clone ID: 1500012M15, 1758 bp) as used in Example 3 had been cloned (
<Preparation of [cDNA+Primer+Reaction Enhancer (Spermidine)+Polymerase+PCR Buffer Composition] Solution>
The cDNA, the primer set 1, spermidine and Taq DNA polymerase were mixed together to prepare a solution having the final concentrations of 0.005 μg/μl of the cDNA, 5 μM of the primer set, 50 U/μl of Taq DNA polymerase, 100 mM of spermidine, 0.1 M of trehalose, 250 mM of Tris-HCl (pH 8.3), 1.25 M of KCl, 132.5 mM of MgCl and 5 μM of each dNTP.
<Spotting of DNA>
The solution prepared as described above was spotted on a sheet of 60MDP paper (Mishima Paper Co., Ltd., Japan) using a 96 pin-tool (Multi 96-multiblot replicator VP409, Bio Medical Science Inc., US) so that the position and the type of the spot could be identified, as shown in
<Amplification of DNA>
The spotted paper was dried at room temperature for at least 30 minutes. Thereafter, a 4 mm×4 mm piece was cut out from the 60MDP paper so that the piece contained the spotted area and then placed in a PCR microtube. The tube was added with 25 μl of water, and PCR was run under the following conditions:
2 min at 94° C.;
29 cycles of (1 min at 94° C., 1 min at 55° C., 75 sec at 68° C.); and then
15 min at 74° C.
After the reaction was completed, a proper amount of the reaction solution was removed from the tube and then subjected to 1% agarose gel electrophoresis. The results are shown in
All publications, patents and patent applications cited herein are incorporated herein by reference in their entirety.
The support according to the present invention can be used for storage and distribution of enzymes. The support is also applicable to printed materials and reagent kits.
Free Text of Sequence Listing
SEQ ID NO:1 shows the nucleotide sequence of primer −21M13.
SEQ ID NO:2 shows the nucleotide sequence of primer 1233-Rv.
SEQ ID NO:3 shows the nucleotide sequence of cDNA for murine malate dehydrogenase.
SEQ ID NO:4 shows the nucleotide sequence of primer HsLH1F.
SEQ ID NO:5 shows the nucleotide sequence of primer HsLH1R.
SEQ ID NO:6 shows the nucleotide sequence of primer HsLH2F.
SEQ ID NO:7 shows the nucleotide sequence of primer HsLH2R.
SEQ ID NO:8 shows the nucleotide sequence of an aptamer for Taq DNA polymerase.
SEQ ID NO:9 shows the nucleotide sequence of cDNA for murine isocitrate dehydrogenase (NADP).
SEQ ID NO:10 shows the nucleotide sequence of cDNA for murine isocitrate dehydrogenase (NAD).
SEQ ID NO:11 shows the nucleotide sequence of cDNA for murine oxoglutarate dehydrogenase.
Number | Date | Country | Kind |
---|---|---|---|
2003-339542 | Sep 2003 | JP | national |
Filing Document | Filing Date | Country | Kind | 371c Date |
---|---|---|---|---|
PCT/JP04/14245 | 9/29/2004 | WO | 11/27/2006 |