1. Field of the Invention
The present invention generally relates to surface treatment and particularly relates to methods and apparatus for treating surfaces such as biosensor surfaces by molecular chemisorption.
2. Discussion of Related Art
Production of biosensor arrays typically involves patterned deposition of biomolecules onto a surface. Sensitivity, reproducibility, and selectivity are significant aspects of biosensor quality. Sensitivity is typically achieved via a dense layer of chemisorbed capture molecules to efficiently capture target molecules. Reproducibility typically depends on highly reproducible anchoring chemistry and good quality patterning of capture molecules. Selectivity typically depends on high selectivity of target molecules and low non-selective adsorption of other molecules. The latter can limit utility of biosensors by accounting for 30% of the signal to be detected.
Bioconjugation involves linking molecules to form a complex having the combined properties of the individual components. Natural and synthetic compounds, and their activities, can be chemically combined to engineer substances having desired characteristics. For example, a protein bound to a target molecule in a complex mixture may be cross-linked with another molecule capable of being detected to form a traceable conjugate. The detection component provides visibility of the target component to produce a complex that can be localized, followed through various processes, or used for measurement.
Bioconjugation has affected many areas in the life sciences. Application of cross-linking reactions to creation of novel conjugates with particular activities has enabled the assay of minute quantities of substances for detection of cellular components and treatment of disease. The ability to chemically attach one molecule to another has produced a growing industry serving research, diagnostics, and therapeutic markets. A significant portion of biological assays is now performed using conjugates for interaction with specific analytes in solutions, cells, or tissues. An overview of conjugate molecules, reagent systems, and applications of bioconjugate techniques is given in G. T. Hermanson, “Bioconjugate Techniques ”, Academic Press, San Diego, 1996.
Surfaces for use in biological environments are found in tools for molecular and cell biology such as substrates for Enzyme Linked Inmmunosorbent Assay (ELISA) in cell cultures, contact lenses, implanted prostheses, catheters, and containers for storage of proteins. Many such surfaces are quickly coated with a layer of proteins via spontaneous adsorption. Some have a beneficial effect. Others are detrimental. There is much interest in identifying biologically “inert” materials for resisting adsorption of proteins. A conventional surface treatment method for introducing such resistance involves coating the surface with poly(ethylene glycol) (PEG). See, for example J. M. Harris ed. Poly(ethylene glycol) Chemistry: Biotechnical and Biomedical Applications, Plenum, N.Y., 1992. Further details of PEG are provided in Gombotz, W. R. et al., J. Biomed. Matter. Res. 15, 1547-1562 (1991). An alternative approach involves the pre-adsorption of bovine serum albumin. This approach however suffers from denaturation of the protein over time or exchange of the protein with other molecules. Therefore, this approach is unsuitable for application to biosensors for detecting presence of proteins by mass or primary amines. Self-assembled monolayers of short chain PEG oligomers (n=2−7) have also been shown to resist adsorption of proteins. See, for example Mrksich, M. and Whitesides G. M., Annu. Rev. Biophys. Biomol. Struct. 25, 55-78 (1996). However, a protein attempting to adsorb may compress and desolvate PEG. These effects are both energetically disadvantageous. See, for example Jeon, S. I. and Andrade, J. D. “Protein surface interactions in the presence of polyethylene oxide: effect of protein size”, J. Coll. Interface Sci. 142, 159-166 (1991); and, Jeon, S. I., Lee, J. H., Adrade, J. D. and de Gennes, P. G., “Protein surface interactions in the presence of polyethyleneoxide: simplified theory”, J. Coll. Interface Sci. 142, 149-158 (1991)).
Biosensor surfaces are typically formed from borosilicate glass. Various conventional schemes for attaching capture molecules, such as antibodies or DNA oligomers, to a biosensor surface will now be described.
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The susceptibility of biosensors to nonspecific adsorption also depends on labeling and detection schemes employed. For example, sandwich ELISA assays are less susceptible because the signal measured depends only on the number of target antigen molecules 10 and the specificity with which labeling antibodies bind to the surface 20. This approach is inert because it involves a dual selective detection. However, label-free detection schemes are more susceptible to other molecules 40 adsorbing nonspecifically to the surface 20. These schemes measure the protein/DNA present on the surface 20 by mass or refractive index. More control over nonspecific adsorption is needed than in sandwich ELISA biosensors. Control over nonspecific adsorption and nonspecific signal generation is also important where bound molecules are detected by chemical labeling techniques. Such control is particularly desirable when chemical labeling exhibits cross-reactivity with chemical groups involved in the chemisorption. A barrier can be added to prevent access to the groups. However, BSA blocking of nonspecific adsorption is not usually possible because BSA produces a signal and reduces the “effective” selectivity of the biosensor.
Nucleic acid aptamers are useful for biosensor production because they can form three dimensional structures. Aptamers can also bind a range of target molecules with acceptable affinity and specificity. Also, aptamers can function in a similar manner to protein molecules. For example, aptamers can change in structure due to ligand-binding. There are many different receptors that are useful in biosensor arrays. However, aptamers are especially useful for several reasons. One reason is that aptamers can be more easily engineered than antibodies. Following selection, aptamers can be reduced to 30-60 nucleotide residue core sequences without reducing binding function. Another reason is that modifications such as fluorescent reporters can be easily introduced by chemical synthesis. Yet another reason is that aptamer structure is mainly a function of Watson-Crick base pairing. Secondary structural interactions allow aptamers to be more easily converted to receptors than antibodies.
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Following such chemisorption of capture molecules 10, the remaining crosslinking spacers 50 and amine surface 20 are blocked with a single functionalized succinimide to cover the amines, and ethanolamine to saturate unreacted succinimide groups. Any remaining surface areas may be treated with PEG. These post-chemisorption steps reduce nonspecific protein absorption. However, as herein before indicated, spaces between the capture molecules 10 and the spacers 50 can still react. These spaces accept nonspecific protein adsorption. BS3 spacers are too short for many proteins and pose problems as herein before described with reference to
It would be desirable to provide a method for effecting chemisorption of capture molecules with improved activity, accessibility, capacity, and specificity of the capture molecules. In particular, it would be desirable to provide a method for biosensor fabrication that: irreversibly attaches capture molecules to the biosensor surface; provides sufficient mobility and accessibility for capture molecules to remain functional; and, minimizes nonspecific adsorption of target antigens or other molecules. It would also be desirable to provide a method for fabricating biosensors which is less laborious, less time consuming, and less wasteful of materials.
In accordance with the present invention, there is now provided a process for producing a biomolecular monolayer on a surface comprising the steps of: reacting the surface with a solution of a heterobifunctional reagent having a first functional group and a second functional group, the first functional group being capable of forming a covalent bond to surface groups, the second functional group forming a covalent bond with a homobifunctional polymer to obtain a self-assembled monolayer, and thereafter reacting the monolayer with biomolecules.
The term biomolecules, as used herein, refers to molecules having biological functionality. For example, the biomolecules may be amine-functionalised. Equally, the biomolecules may comprise a nucleic acid aptamer derivative. Preferably, an excess of the homobifunctional polymer is involved. The heterobifunctional reagent is preferably mixed with the homobifunctional polymer prior to exposure to the surface. The surface may be glass, metal, or the like. The heterobifunctional reagent is preferably an aminoalkyl trialkoxysilane. In a preferred embodiment of the present invention, the heterobifunctional reagent is 3-aminopropyl triethoxysilane. However, the heterobifunctional reagent may be an alkylthiol. The second functional group of the heterobifunctional reagent preferably reacts with one functional group of the homobifunctional polymer to form a covalent bond therebetween. In a preferred embodiment of the present invention, the functional groups of the homobifunctionl polymer are N-hydroxy succinimide groups. The homobifunctional polymer may be a homobifunctional polyethylene glycol. The biomolecules may react with one functional group of the homobifunctional polymer to form a covalent bond therebetween. The covalent bonds formed between the biomolecules and the homobifunctional polymer is preferably an amide bond.
Viewing the present invention from another aspect, there is now provided a biosensor having a surface layer formed by a process for producing a biomolecular monolayer on a surface comprising the steps of: reacting the surface with a solution of a heterobifunctional reagent having a first functional group and a second functional group, the first functional group being capable of forming a covalent bond to surface groups, the second functional group forming a covalent bond with a homobifunctional polymer to obtain a self-assembled monolayer, and thereafter reacting the monolayer with capture molecules.
Viewing the present invention from yet another aspect, there is now provided a biosensor array comprising a patterned deposit of biomolecules on a substrate wherein the patterned deposit is formed by a process for producing a biomolecular monolayer on a surface comprising the steps of: reacting the surface with a solution of a heterobifunctional reagent having a first functional group and a second functional group, the first functional group being capable of forming a covalent bond to surface groups, the second functional group forming a covalent bond with a homobifunctional polymer to obtain a self-assembled monolayer, and thereafter reacting the monolayer with capture molecules.
Viewing the present invention from a further aspect, there is now provided a biochip having a surface layer formed by a process for producing a biomolecular monolayer on a surface comprising the steps of: reacting the surface with a solution of a heterobifunctional reagent having a first functional group and a second functional group, the first functional group being capable of forming a covalent bond to surface groups, the second functional group forming a covalent bond with a homobifunctional polymer to obtain a self-assembled monolayer, and thereafter reacting the monolayer with biomolecules.
Viewing the present invention from still a further aspect, there is now provided a biochip array comprising a patterned deposit of biomolecules on a substrate wherein the patterned deposit is formed by a process for producing a biomolecular monolayer on a surface comprising the steps of: reacting the surface with a solution of a heterobifunctional reagent having a first functional group and a second functional group, the first functional group being capable of forming a covalent bond to surface groups, the second functional group forming a covalent bond with a homobifunctional polymer to obtain a self-assembled monolayer, and thereafter reacting the monolayer with biomolecules.
In a preferred embodiment of the present invention, there is provided a simple two step chemical process for attaching capture molecules to a biosensor surface. The process employs a homobifunctional PEG crosslinker with succinimide groups at each end to chemisorb the capture molecules onto the surface with higher density and reproducibility than hitherto possible. The process improves the sensitivity and selectivity of bioassays. Also provided are protocols and devices for treating biosensor surfaces economically with high yield.
In a particularly preferred embodiment of the present invention, there is provided a method for attaching a spacer molecule to a clean glass surface. The method involves a non-symmetrical reaction of a heterobifunctional reagent such as 3-aminopropyl triethoxysilane (APTS) with a homobifunctional polymer such as homobifunctional succinimide end functionalized PEG polymer. The reaction is carried out in a water free solvent. A high concentration is employed to favor bimolecular reactions. The present invention also extends a device for applying a small amount of prereacted reagent to glass surfaces in the interests of saving expensive reagents.
Preferred embodiments of the present invention will now be described, by way of example only, with reference to the accompanying drawings, in which:
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The NHS crosslinker 210 has two NHS functions; one at each end. At one end, the first NHS function binds to the APTS 200. At the other end, the second NHS function binds to an amine-functionalized aptamer 220. In both case, the binding is via covalent bonds.
In a particularly preferred process embodying the present invention, the reaction referred to in connection with
The technique herein before described is superior to conventional techniques because the heterobifunctional reagent is prepared in situ. No further purification is needed. This is especially advantageous because purification of silanized PEG by conventional techniques such as chromatography is very difficult if not impossible. Non-aqueous conditions prevent polymerization of APTS and facilitate regular treatment of the surfaces 20. In-situ preparation of the reagent provides a fresh reactive intermediate which is not degraded or polymerized due to storage.
The high concentration in the mixture of 50 mM PEG and APTS improves bimolecular reaction speed. This allows preparation of the reagent without unwanted decay. A higher concentration of NHS over APTS helps to drive the reaction of APTS with NHS groups to completion. The capillary gap increases the speed of surface reaction by eliminating diffusion limitation. Because there are substantially no gradients in the mixture, treatment of the surfaces 20 is more homogeneous. The larger the surface to volume ratio between the surfaces 20, the more polymerization reactions are reduced and reaction of triethoxysilane with the surfaces 20 is favored. These may otherwise reduce the specificity of detection schemes such as detection of primary amines through CBQCA or NHS-rhodamine. A low level of APTS present in the mixture significantly reduces the background level against which primary amines are detected.
Reaction of the reagent between the surfaces 20 is stopped by removal of the solution by filter paper followed by three wash cycles with DMSO. Washing removes unreacted heterobifunctional molecules together with polymerization products and homobifuctional byproducts. The surfaces 20 are then disassembled and blow dried with nitrogen to remove traces of DMSO. Capture molecules 10 are then attached to the freshly NHS-activated surfaces 20. Alternatively, the surfaces 20 may be stored for a few days in dry argon.
Treated glass surfaces 20 as herein before described can anchor oligonucleotides with terminal aminogroups (5′ or 3′ end), proteins, and other NH2-functionalized molecules. In a particularly preferred embodiment of the present invention, chemisorption is performed by filling a PDMS microfluidic network applied to the NHS-activated surface 20 with aqueous solutions of amino-functionalized compounds. Oligonucleotides are chemisorbed to the surface 20 in an aqueous solution containing 10% DMSO and 15-20% PEG (MW=1000). A concentration of 20 mM oligonucleotide provides particularly homogeneous coverage of the surface 20 by oligonucleotides during chemical reaction and remains substantially unaffected by drying.
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Preferred embodiments of the present invention have been described herein by way of example only. It will be appreciated by those skilled in the art that there are many more embodiments of the present invention possible.
Number | Date | Country | |
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Parent | 10309674 | Dec 2002 | US |
Child | 11472639 | Jun 2006 | US |