Patent Application
20240083950
The present invention relates to a method for synthesizing dalbavancin.
Dalbavancin is a semisynthetic lipoglycopeptide and exerts its bactericidal effect by disrupting cell wall biosynthesis. It binds to the D-alanyl-D-alanyl residue on growing peptidoglycan chains and prevents transpeptidation from occurring, preventing peptidoglycan elongation and cell wall formation.
Dalbavancin is manufactured by fermentation of a selected Nonomuraea strain to generate the natural glycopeptide complex A-40926. This precursor is then selectively esterified at the carboxyl group of its sugar moiety, its peptidyl carboxyl group is amidated and the ester of the N-acylaminoglucuronic acid carboxyl group is saponified. The outcome is a compound mixture of two closely related structural families—A and B—that can be further subdivided into a total of five subtypes (see table below)
Various methods exist for converting the precursor A-40926 to dalbavancin, all comprising the steps of esterification, amidation and hydrolysis.
U.S. Pat. No. 6,900,175 describes an esterification step using a solution of sulfuric acid in methanol at 0° C. followed by isolation of the product via pH adjustment with triethylamine to precipitate the zwitterionic form of the product, followed by centrifugation and vacuum-oven drying.
The present invention provides an alternative and improved process for synthesizing dalbavancin from the precursor A-40926, the process comprising the steps of:
In a process as described in the present invention, dalbavancin is prepared from the naturally occurring compound A-40926, which is depicted as Formula I below, through conversion of one of the two carboxyl groups of A-40926 into a (dimethylamino)propyl amide.
In a process according to the invention, dalbavancin is synthesized from the compound in Formula I:
As it appears from Formula I, A-40926 has two carboxylic groups, a peptidyl carboxylic group and a N-acylaminoglucuronic acid group. In order to obtain dalbavancin, the peptidyl carboxylic group is amidated. Accordingly, selective alkyl esterification of the N-acylaminoglucuronic acid group needs to be performed in order to protect the group from amidation and the first step of the synthesis process is an esterification step in order to obtain the compound of Formula II
The esterification step is perfomed by adding A-40926 to an alcohol solution comprising an acid, such as for example any of the acids HCl, HBr, H2SO4, H3PO4, HNO3, F3CCO2H, F3CSO3H, H3CSO3H or p-toluene sulfonic acid
Accordingly, depending on the acid used, X in Formula II may be Cl, Br, HSO4, SO4, H2PO4, HPO4, PO4, NO3, F3CCO2, F3CSO3, H3CSO3 or p-toluene sulfonate.
By the term “alcohol solution” is understood a solution comprising an alcohol and wherein not more than 2% water is present. In one embodiment there is not more than 1.9%, 1.8%, 1.7%, 1.6%, 1.5%, 1.4%, 1.3%, 1.2%, 1.1%, 1.0%, 0.9%, 0.8%, 0.7%, 0.6%, 0.5%, 0.4%, 0.3%, 0.2%, 0.1% or 0.05%.
In one embodiment the amount of water in the alcohol solution is in the range of 0.05% to 2%.
The alcohol may be methanol, ethanol or a C3-C4 alcohol.
R of Formula II may, depending on the alcohol used, be a C1 to C6 alkyl group.
By the term “C1-C6 alkyl” is meant compounds such as methyl, ethyl, propyl, n-butyl, n-pentyl, n-hexyl, or branched forms thereof.
In one embodiment, the alcohol used is methanol, ethanol or propanol and R is CH3, CH3CH2 or CH3CH2CH2, respectively.
In one embodiment, the alcohol used is methanol and R is CH3.
As mentioned above, the alcohol solution may further comprise an acid such as, e.g. HCl, HBr, H2SO4, H3PO4, HNO3, F3CCO2H, F3CSO3H, H3CSO3 H or p-toluene sulfonic acid.
In one embodiment the acid may be added to the alcohol solution in the form of an anhydrous acid.
However, not all acids are available as anhydrous acids. In one embodiment, the acid may be 15 generated in situ in the alcohol solution by addition of an acyl halide to the alcohol solution.
The term “acyl” is meant to including C1-C6 straight or branched alkyl chains. Using an acyl halide to generate an acid in situ as opposed to the addition of an aqueous acid, allows for a faster reaction as the presence of significant quantities of water slows the esterification reaction.
In one embodiment, the halide is chloride, and the acid (HCl) is generated by addition of acyl chloride to the alcohol solution.
In one embodiment, the acyl is acetyl, and the acid is generated by addition of acetyl chloride to the alcohol solution.
In one embodiment of the invention the alcohol is methanol, and acetyl chloride is added for in situ generation of HCl.
In one embodiment, the halide is bromide, and the acid (HBr) is generated by addition of acyl bromide to the alcohol solution.
In one embodiment, the acyl is acetyl, and the acid is generated by addition of acetyl bromide to the alcohol solution.
In one embodiment of the invention the alcohol is methanol, and acetyl bromide is added for in situ generation of HBr.
The esterification step may be performed at a temperature from −20° C. to 10° C., such as, e.g. from −15° C. to 5° C., from −14° C. to 5° C., from −13° C. to 5° C., from −12° C. to 5° C., from −11° C. to 5° C., from −10° C. to 5° C., from −10° C. to 4° C., from −10° C. to 3° C., from −10° C. to 2° C., from −10° C. to −1° C., from −10° C. to 0° C., from −9° C. to 0° C., from −8° C. to 0° C., from −7° C. to 0° C., from −7° C. to −1° C., from −7° C. to −2° C., from −7° C. to −3° C. and from −7° C. to −4° C.
In one embodiment the reaction is performed at a temperature of 5° C., 4° C., 3° C., 2° C., 1° C., 0° C., −1° C., −2° C., −3° C., −4° C., −5° C., −6° C., −7° C., −8° C., −9° C. or −10° C.
The reaction time will depend on the temperature used, and may be from 1 hour to 50 hours, such as, from 1 hour to 45 hours, from 2 hours to 40 hours, from 2 hours to 30 hours, from 2 hours to 24 hours, from 3 hours to 23 hours, from 4 hours to 22 hours and from 5 hours to 21 hours.
The esterification step may be performed using a molar ratio of acetyl chloride:A-40926 of from 30:1 to 5:1, such as, e.g. from 25:1 to 5:1, from 20:1 to 5:1, from 25:1 to 10:1 and from 20 20:1 to 10:1.
In one embodiment the reaction is performed using a molar ratio of acetyl chloride:A-40926 of 20:1, 19:1, 18:1, 17:1, 16:1, 15:1, 14:1, 13:1, 12:1, 11:1 or 10:1.
After the esterification reaction, the resulting intermediate needs to be prepared for the amidation step. In methods known from the art for synthesizing dalbavancin, the intermediate from the esterification step is prepared for the amidation step by precipitation, isolation of the resulting solid and drying in order to remove any unwanted solvents. However, this may lead to an increase in the formation of unwanted impurities, especially of the degradation products mannosyl aglycone (MAG) and the demannosyl derivative (depending on the pH). In addition, methods known in the art involving pH adjustment to precipitate the product may result in a solid that is unsuitable for rapid filtration, and apparently requires thorough drying in a heated vacuum oven to remove all traces of water and alcohol solvent prior to the subsequent amide coupling.
The present inventors have surprisingly found that by using a suitable amount of an organic antisolvent such as tert-butyl methyl ether (TBME) or dimethoxyethane (DME) to precipitate the compound of Formula II, the resulting precipitate can, after a filtration step, be used directly in the following amidation reaction instead of having to further dry the precipitate in an oven, such as a vacuum oven. The inventors have found that by using TBME or DME an easily filterable precipitate is formed, which is suitable for a more facile and time-efficient filtration, and thereby avoiding the need for centrifugation. The inventors have found that the present method generating an easily filterable precipitate is especially suitable for use in an upscale synthesis process and has been used successfully in a scale of 500 g or more of the starting compound A-40926. Other prior known methods may generate a precipitate that may be possible to filter in smaller scale but not possible or practical in larger scale.
20 In one embodiment of the invention the precipitation is performed using TBME. The ratio of alcohol used for esterification to TBME may be from about 1 to 5.0, such as, e.g. from 1 to 4.9, from 1 to 4.8, from 1 to 4.7, from 1 to 4.6, from 1 to 4.5, from 1 to 4.4, from 1 to 4.3, from 1 to 4.2, from 1 to 4.1, from 1 to 4.0, from 1 to 3.9, from 1 to 3.8, from 1 to 3.7, from 1 to 3.6, from 1 to 3.5 and from 1 to 3.4, from 1 to 3.3, from 1 to 3.2, from 1 to 3.1, from 1 to 3.0, from 1 to 2.9, from 1 to 2.8, from 1 to 2.7, from 1 to 2.6, from 1 to 2.5, from 1 to 2.4, from 1 to 2.3, from 1 to 2.2, from 1 to 2.1 and from 1 to 2.0.
The solution comprising the precipitated compound of Formula II may be filtered prior to step iv.
The solution comprising the precipitated compound of Formula II may be filtered by using just gravity.
Accordingly, in on embodiment the filtration step is performed without application of positive or negative pressure to the filter.
The filtration step may be completed by preparing the product of the esterification process for the subsequent amidation reaction by treating it with a flow of gas on the filter, such as, e.g., dry nitrogen gas, a process that is fast and may be completed in approximately an hour and by which the formation of degradation products is avoided, as opposed to e.g., drying in a vacuum oven.
The solution comprising the precipitated compound of Formula II may be filtered using a Nutsche filter. In one embodiment the filtering is performed under gravity, and/or with a high pressure of dry nitrogen gas applied before the filter, and/or with low pressure applied after the Nutsche filter.
After filtering of the solution containing the precipitated compound of Formula II, the precipitate is dissolved in a suitable solvent, such as, e.g. DMSO (dimethyl sulfoxide), DMF (dimethylformide), DMA (dimethylacetamide), THF (tetrahydrofuran), NMP (N-methyl-2-pyrrolidone), or mixtures thereof and a standard amine coupling reagent and 3-(dimethylamino)-1-propylamine were added to the obtained solution in order to obtain a compound of Formula III.
Examples of amine coupling reagents that may be used are DCC (dicyclohexylcarboiimide), DIC (diisopropylcarbodiimide), EDC (N-ethyl-N′-(3-dimethylaminopropyl)carbodiimide), HOBt (hydroxybenzotriazole), HOAt (1-hydroxy-7-azabenzotriazole), PyBOP (benzotriazol-1-yl-oxytripyrrolidinophosphonium hexafluorophosphate), HATU (O-(7-Azabenzotriazol-1-yl)-N,N,N′,N′-tetramethyluronium hexafluorophosphate).
After the amine coupling step the compound of Formula II may be obtained by precipitation, filtering and optionally vacuum drying.
In order to obtain dalbavancin, the alkyl group that was added to the N-acylaminoglucuronic acid carboxyl group in the esterification step needs to be removed. This is performed by an ester hydrolysis step.
The dalbavancin obtained by the synthesis process described herein may be further purified in order to remove remaining fermentation related impurities and/or synthesis and process related impurities.
All numbers in the specification and claims are modified by the term “about”. This means that each number includes minor variations as defined ±10% of the numerical value or range in question.
| Number | Date | Country | Kind |
|---|---|---|---|
| PA202100027 | Jan 2021 | DK | national |
| Filing Document | Filing Date | Country | Kind |
|---|---|---|---|
| PCT/EP2022/050354 | 1/10/2022 | WO |
