The present invention is in the technical field of biomolecular sensing. More particularly, the present invention is in the technical field of plasmon resonance-based sensing of biomacromolecules. In addition, the present invention is in the technical field of photonics. More particularly, the present invention is in the technical field of plasmon resonance-based sensing. More particularly, the present invention is in the technical field of multiply-resonant plasmon resonant sensing and imaging.
Optical techniques that identify and measure biomacromolecules such as proteins, glycosaminoglycans and nucleic acids frequently require fluorescent or enzymatic labels as well as a means of isolating or separating analytes. Label-free techniques such as surface plasmon resonance (SPR) separate analytes in complex mixtures through the use of specific capture ligands, usually antibodies, bonded to a metallic surface in contact with a dielectric, and measure the presence of bound biomolecules by optically measuring the reflectance/scattering/transmittance off the metallic surface. The sensitivity of present SPR systems with wavelengths in the visible or near-infrared portions of the spectrum is insufficient to observe small molecules and biomolecular complexes at low enough concentrations or surface coverage. The present invention aims to improve the sensitivity of label-free plasmon resonance-based sensors for the detection of biomolecules, their complexes, or larger biological entities such as viruses, bacteria or exosomes.
Light at a specific wavelength striking the metal/dielectric interface at a specific angle can support a rapidly decaying wave phenomenon (surface plasmon) if there is a means of matching the momentum (K-vector) of the light with that of the loosely bound electrons at the metal/dielectric interface. When this resonance energy transfer occurs, the intensity of the light reflected from the metal surface decreases markedly. This resonance phenomenon is quite sharp (on the order of a few millidegrees to few degrees depending on excitation conditions and grating shape), and the incident angle is extremely sensitive to the refractive index at the surface of the metal substrate. In the present invention, a diffraction grating is embossed on a thick (100 nm) aluminum layer with two additional layers on top of it or a thin aluminum layer with the additional layers on an underlying grating. The diffraction grating also provides the momentum matching mechanism at ultraviolet (UV) wavelengths where the biomolecules have enhanced refractive indices and light absorption, resulting in an enhanced sensitivity for the overall detection process.
Typically, antibodies bound to the metal surface are used to capture specific analytes present in a complex sample mixture which shows over the metal surface. This highly specific immunochemical process results in binding of the specific analytes to well-identified regions of the metal substrate without the necessity of physical compartmentalization of the fluid. For each captured analyte, the magnitude of the change in the resonant angle is proportional to the mass of analyte captured in each region. With appropriately designed accommodations, an SPR analyzer can be made to capture living eukaryotic cells (or viruses or bacteria) by binding to surface antigens normally expressed on the surface of the cells. In this manner, specific cell types, distinguished by their surface antigens can be isolated and captured on a metal surface. Cells captured in an SPR analyzer in this manner can be activated by contact with suitable ligands for distinct cell surface receptors.
Captured antibodies for various cell secretions (cytokines) can be spotted on the surface in order to immobilize the secreted cytokines. Cytokines are relatively small molecules and the amount of a particular cytokine secreted by a single cell is typically too small to be detected by SPR resonance angle shifts. Also, conventional SPR systems do not possess enough sensitivity to detect certain molecules at concentrations that are encountered in healthy blood serum or plasma. Therefore, despite the wide availability of the technique, improvement of sensitivity for the detection of biomolecules and biological structures is highly desirable in plasmon resonance-based sensing.
A quick survey of the literature points to the success of surface plasmon resonance (SPR) biosensors in a wide range of fields from fundamental biological studies to clinical diagnosis applications (Rich and Myszka, 2005; Shankaran et al., 2007). While much of this success has been recent, SPR has long played a role in surface sciences. In the early 20th century, the excitation of surface plasmons, initially termed Wood's Anomalies, was observed as anomalous reflective patterns when polarized light was shown on a metal grating (Wood, 1902). The phenomenon was attributed to the resonant coupling of photons from the polarized light to the oscillation of metal-free electrons (surface plasmon polaritons), generating in the process a strong electromagnetic evanescent wave bound to the metal surface. This phenomenon was widely applied to the study of thin metal films and coatings. Much of the pioneering work in describing the unique properties of surface plasmons, the methods for its resonant excitation and its use in sensing has been carried out by Ritchie et al. (1968), Raether (1988), and Nylander et al. (1982). Today, biosensors using the excitation of the surface plasmons are generally termed surface plasmon resonance (SPR). Those biosensors provide rich information on the specificity, affinity, and kinetics of biomolecular interactions and/or the concentration levels of an analyte of interest from a complex sample (Shankaran et al., 2007). The analysis is done in real-time and without requiring fluorophore labeling. Currently, numerous commercial systems are available; however, their designs do not differ significantly from the original concept described by Liedberg et al. (1983) to demonstrate SPR biosensing. The literature contains numerous examples of novel SPR biosensor designs that improve upon the traditional and popular prism-coupled SPR (Kretchmann's configuration). Homola's 1999 review paper and his follow-up article in 2003 provide an excellent overview of the development from the past 20 years (Homola, 2003; Homola et al., 1999). Recently, much of the development of SPR is directed towards providing an integrated, low-cost, reusable and sensitive biosensor.
In SPR biosensing, the adsorption of a targeted analyte by a surface bioreceptor is measured by tracking the change in the conditions of the resonance coupling of incident light to the propagating surface plasmon wave (SPW). The existence of this surface plasmon wave is dictated by the electromagnetic (EM) properties of a metal, typically gold or silver, and a dielectric (sample-medium) interface. The resonance coupling appears as a dip in the reflectivity of the light spectrum, which is traditionally tracked by measuring the wavelength, the incident angle, or the intensity of the reflected light. The coupling of the light to the SPW requires, for electromagnetic reasons, a high-index prism or a periodic grating surface (Raether, 1988). The sensitivity of the SPR lies in the strong electromagnetic enhancement of the SPW. Commercial SPR biosensors are generally capable of detecting 1 pg/mm2 of absorbed analytes. This sensitivity is strongly dependent on many parameters, but is particularly dependent on surface functionalization. In comparing sensitivity between the reported SPR biosensors, one must be cautious as the sensitivity values are often described independently of the surface functionalization chemistry or for a specific application. For a more relevant assessment, the sensitivity, where it is available, is typically expressed in terms of detectable refractive index unit (RIU) change. This value strictly reflects the performance of the optical configuration, the measurement approach or the data analysis algorithm. Commercial systems are reported with sensitivity typically within 1×10−5 to 1×10−6 RIU. However, the RIU sensitivity is not a direct indication of the lowest concentration of biomolecules that can be detected with an SPR system, since sensitivity to bulk refractive index changes can be significantly different than sensitivity to adsorbed biomolecular layers. Today, the key challenge in the SPR biosensor development lies not primarily in the integration of the various components of the biosensor (sampling handling, control electronics, etc.) but on providing robust integrated SPR biosensors that are as or more sensitive (<pg/mm2) than their current counterparts. Beyond the requirement for high-sensitivity, in particular for the detection of small biomolecules, low cost of production, compact design, reusability and increased functionality (multiple analyte detection, temperature control, etc.) are as well sought.
The surface plasmon resonance is significantly affected by a thin analyte layer on the metal layer and as well as by the bulk refractive index changes. In the absence of an analyte layer the SPR angle (θSPR) is determined by:
where k0=2π/λ is the free space wavevector magnitude, and kSP is the surface plasmon polariton (SPP) wavevector magnitude given as:
where ∈d and ∈m are the complex dielectric constants of the bulk and the metal supporting the SPP, respectively. The change in the SPP wavevector upon deposition of an analyte layer of thickness h is given by:
where Δnorg=norg−nd is the refractive index contrast between the organic layer index and the bulk (analyte buffer) and γd=ik0∈d/√{square root over (∈d+∈m)}. The change in the SPR angle upon changes in the bulk refractive index (Δnd) and the analyte layer thickness of h is then approximated as:
The approximation remains valid for h<<1/˜233 nm for a wavelength of 700 nm on Au/water interface. Gold and Silver cannot be used effectively in the UV range for plasmonic sensing, as their optical properties do not allow high quality factor plasmonic resonances due to intrinsic material losses. When aluminum is used as the metal and wavelengths are chosen in the UV part of the spectrum (200-400 nm), the field penetration depth into the dielectric decreases to several tens of nanometers, enhancing the sensitivity, which is a subject of this invention. However, adsorption to aluminum is less effective compared to gold, and gold is optically lossy in the UV range. Therefore, the optimal thickness of gold must be used not to over-dampen the plasmonic resonance on the aluminum-dielectric interface. In the present invention, a thin barrier layer of Al2O3 or SiO2 is used on the aluminum surface as a protection layer to the adverse chemical effects of the biological buffer solutions on the aluminum, without significantly degrading the quality factors of the plasmonic resonances. Equation 5 captures the shift in θSPR with accumulation of an analyte layer or varying bulk refractive index close to the actual values calculated using the transfer matrix method (TMM) especially for the longer wavelengths resulting in larger penetration depths (1/γd).
The grating coupled configuration can offer a simpler setup by eliminating the need for a prism. When illuminated by a collimated beam at a specific angle, the grating structure exhibits resonances whose wavelength and quality factor depends on the grating period and groove depth. The patterning requirement can be eased when large-area patterning techniques are used for the fabrication or low-cost commercial grating surfaces. The SPR resonance for the grating coupled configuration can be observed as a minimum in the reflectance intensity when excited by transverse electric (TE) or transverse magnetic (TM) polarization, depending on the orientation of the grating with respect to the plane of incidence of the excitation beam. The sensitivity of the grating coupled SPR configuration to the bulk and the analyte layer can be expressed as:
where the resonant coupling angle (θOCSPR) is calculated through:
where m is an integer defining the order and ΛG is the grating period.
For conventional SPR systems working in the visible or near infrared part of the spectrum (400 nm-1800 nm), the SPR angle or wavelength shift upon adsorption is dependent on the optical thickness Δnorgh of the adsorbed species, and refractive indices of biomolecules and biomolecular structures are typically near n=1.47, and without strong absorption.
The present invention is an optical method for examining the adsorption of biomacromolecules, including proteins and nucleic acids and small biologically relevant molecules such as drug molecules, or larger biological entities such as viruses, exosomes and bacteria, on surfaces.
This method comprises utilizing ultraviolet wavelengths (200-350 nm) for the excitation of surface plasmons or localized plasmons on appropriately designed photonic surfaces with resonances in the ultraviolet region, where biomolecules and other stated biologically relevant structures have inherent characteristic absorption lines based on their composition; and recording the changes in the intensity of reflected/scattered/transmitted light from the plasmonic surface in the ultraviolet region, achieving improved sensitivity to the adsorption of biomolecules and gross biological entities such as viruses, exosomes and microorganisms. The method also comprises determining the optical thickness and absorption coefficient of the thin adsorbed biomolecular layers or individual molecules through analysis of intensity of the angular or wavelength dependence of the reflected light. The method also comprises imaging the presence of biomacromolecules, viruses or other biological nanostructures under the condition of multiple-resonance, by choosing the excitation wavelength, the plasmonic resonance wavelength and the molecular absorption wavelengths to coincide, thereby improving sensitivity.
The present invention is a method for enhanced plasmonic sensing and imaging, by choosing the excitation wavelength to coincide with the native molecular absorption of biomolecules in the 200-350 nm region of the spectrum and choosing an appropriately designed plasmonic substrate that exhibits a resonance coincident with the excitation wavelength and absorption lines of biomolecules.
All illustrations of the drawings are for the purpose of describing selected versions of the present invention and are not intended to limit the scope of the present invention.
Referring now to the present invention in more detail, in
In one embodiment of the UVPS 1, a surface relief grating 13 has a flat profile, which is made out of aluminum or is coated with an aluminum layer with a thickness ranging between 50 nm to 100 nm.
In another embodiment of the UVPS 1 shown in
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In more detail, still referring to the present invention shown in
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The advantages of the present invention include, without limitation, a highly enhanced sensitivity to the presence of the biomolecules 7 and biomolecular structures 8 compared to plasmon resonance sensors without overlapping molecular and plasmonic resonances. Referring to
In another embodiment of the invention, referring to
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In another embodiment of the invention, referring to
In broad embodiment, the present invention is an optical method for the enhancement of sensitivity in biomolecular sensing by choosing a plasmonic substrate that exhibits resonances in the UV part of the spectrum, coinciding with native UV absorption spectra of biomolecules.
In a specific method of selecting a plurality of optical constants and an absorbed biomolecular layer thickness, the present invention is provided with standard reflectance data from the plasmonic substrate with absorbed biomolecules and is provided with an algorithm configured to calculate a theoretical reflectance for a given optical configuration for a plurality of optical constants and adsorbed biomolecular layer thickness. Moreover, the reflectance data includes a plurality of angle of incidence ranging between 0 degrees to 88 degrees and is a wavelength ranging between 200 nm and 350 nm. Thus, the plurality of optical constants and absorbed biomolecular layer thickness is selected in accordance to a best fit of the standard reflectance data by minimizing a square mean error between the standard reflectance data and the set of calculation results.
While the foregoing written description of the invention enables one of ordinary skill to make and use what is considered presently to be the best mode thereof, those of ordinary skill will understand and appreciate the existence of variations, combinations, and equivalents of the specific embodiment, method, and examples herein. The invention should therefore not be limited by the above described embodiment, method, and examples, but by all embodiments and methods within the scope and spirit of the invention.
Although the invention has been explained in relation to its preferred embodiment, it is to be understood that many other possible modifications and variations can be made without departing from the spirit and scope of the invention as hereinafter claimed.
The current application claims a priority to the U.S. Provisional Patent application Ser. No. 62/545,897 filed on Aug. 15, 2017.
Number | Date | Country | |
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62545897 | Aug 2017 | US |