Embodiments of the invention relate generally to magnetic resonance (MR) imaging and, more particularly, to correcting high order eddy-current-induced distortion in diffusion-weighted echo planar imaging.
When a substance such as human tissue is subjected to a uniform magnetic field (polarizing field B0), the individual magnetic moments of the spins in the tissue attempt to align with this polarizing field, but precess about it in random order at their characteristic Larmor frequency. If the substance, or tissue, is subjected to a magnetic field (excitation field Bi) which is in the x-y plane and which is near the Larmor frequency, the net aligned moment, or “longitudinal magnetization”, Mz, may be rotated, or “tipped”, into the x-y plane to produce a net transverse magnetic moment Mt. A signal is emitted by the excited spins after the excitation signal B1 is terminated and this signal may be received and processed to form an image.
When utilizing these signals to produce images, magnetic field gradients (Gx, Gy, and Gz) are employed. Typically, the region to be imaged is scanned by a sequence of measurement cycles in which these gradients vary according to the particular localization method being used. The resulting set of received NMR signals are digitized and processed to reconstruct the image using one of many well known reconstruction techniques.
It is well known that Diffusion-Weighted Echo Planar Imaging (DW-EPI) often suffers from diffusion encoding direction dependent distortions due to diffusion gradient generated eddy current field. These distortions, if not corrected, can lead to mis-registration among DW images of different directions and inaccuracies in any post processing operations involving DW image combination. Dual spin echo (also called twice refocused) DW-EPI has been proposed to provide a certain level of inherent eddy current cancellation, but with a significant increase in echo time and decrease in signal-to-noise ratio (SNR). For example, a typical dual spin echo protocol may generate about half as much SNR as the corresponding single spin echo (also called Stejkal-Tanner sequence) protocol on liver imaging at 3T. In many cases (e.g., whole body DW-EPI), increasing NEX is not an option to increase SNR because of the associated increase in scan time. Therefore, it is desirable to keep single spin-echo while reducing the resulting distortion in practice.
Conventional distortion correction methods have focused on correcting only the linear and constant eddy currents (also called B0 eddy currents), either by pre-emphasis or by explicitly modifying gradient waveforms and receive frequency. However, uncompensated eddy currents of high spatial order due to gradient coil leakage field, or simply high order eddy currents (HOEC), can also be significant with the desire for increased b values and the increase of gradient amplitude and slew rate in modern MR scanners. Because of the high spatial order, distortions generated by the magnetic fields created by these eddy currents are not only diffusion gradient direction dependent, but also slice dependent.
It would therefore be desirable to have a system and method capable of correcting distortion due to HOEC in DW-EPI.
According to an aspect of the invention, an MRI apparatus comprises a magnetic resonance imaging (MRI) system having a plurality of gradient coils positioned about a bore of a magnet, and an RF transceiver system and an RF switch controlled by a pulse module to transmit RF signals to an RF coil assembly to acquire MR images. The MRI apparatus also comprises a computer programmed to acquire calibration data from a calibration scan, the calibration data configured to characterize high order eddy-current-generated magnetic field error of an imaging system. The computer is also programmed to process the calibration data to generate a plurality of basis coefficients and a plurality of time constants and to calculate a plurality of basis correction coefficients based on the plurality of basis coefficients, the plurality of time constants, and gradient waveforms in a given pulse sequence. The computer is further programmed to execute a diffusion-weighted imaging scan that comprises application of a DW-EPI pulse sequence to acquire MR data from an imaging subject and reconstruction of an image based on the acquired MR data. The computer is also programmed to apply high order eddy-current-generated magnetic field error correction during image reconstruction configured to reduce high order eddy-current-induced distortion in the reconstructed image.
According to another aspect of the invention, a method for correcting high order eddy-current-induced distortions in diffusion-weighted echo planar imaging (DW-EPI) comprises acquiring calibration data from a calibration scan, the calibration data configured to characterize high order eddy currents of an imaging system, processing the calibration data to generate a plurality of basis coefficients and a plurality of time constants, and calculating a plurality of basis correction coefficients based on the plurality of basis coefficients and based on the plurality of time constants. The method also comprises applying a DW-EPI pulse sequence to acquire MR data from an imaging subject, reconstructing an image based on the acquired MR data, and wherein the reconstructing the image comprises applying high order eddy-current-generated magnetic field error correction configured to reduce high order eddy-current-induced distortion in the image.
According to yet another aspect of the invention, a non-transitory computer readable medium having stored thereon a computer program comprising a set of instructions, which, when executed by a computer, causes the computer to acquire calibration data from a calibration scan configured to characterize high order eddy current generated magnetic field error of an imaging system and to process the calibration data. The set of instructions also causes the computer to generate a plurality of basis coefficients and a plurality of time constants based on the processed calibration data and to calculate a plurality of basis correction coefficients based on the plurality of basis coefficients, the plurality of time constants, and gradient waveforms in a DW-EPI pulse sequence. The set of instructions also causes of the computer to apply the DW-EPI pulse sequence to acquire MR data from an imaging subject, to reconstruct an image based on the acquired MR data, and to apply high order eddy-current-generated magnetic field error correction during reconstruction of the image configured to reduce high order eddy current induced distortion in the reconstructed image.
Various other features and advantages will be made apparent from the following detailed description and the drawings.
The drawings illustrate embodiments presently contemplated for carrying out embodiments of the invention.
In the drawings:
Referring to
The system control 32 includes a set of modules connected together by a backplane 32a. These include a CPU module 36 and a pulse generator module 38 which connects to the operator console 12 through a serial link 40. It is through link 40 that the system control 32 receives commands from the operator to indicate the scan sequence that is to be performed. The pulse generator module 38 operates the system components to carry out the desired scan sequence and produces data which indicates the timing, strength and shape of the RF pulses produced, and the timing and length of the data acquisition window. The pulse generator module 38 connects to a set of gradient amplifiers 42, to indicate the timing and shape of the gradient pulses that are produced during the scan. The pulse generator module 38 can also receive patient data from a physiological acquisition controller 44 that receives signals from a number of different sensors connected to the patient, such as ECG signals from electrodes attached to the patient. And finally, the pulse generator module 38 connects to a scan room interface circuit 46 which receives signals from various sensors associated with the condition of the patient and the magnet system. It is also through the scan room interface circuit 46 that a patient positioning system 48 receives commands to move the patient to the desired position for the scan.
The gradient waveforms produced by the pulse generator module 38 are applied to the gradient amplifier system 42 having Gx, Gy, and Gz amplifiers. Each gradient amplifier excites a corresponding physical gradient coil in a gradient coil assembly generally designated 50 to produce the magnetic field gradients used for spatially encoding acquired signals. The gradient coil assembly 50 forms part of a resonance assembly 52 which includes a polarizing magnet 54 and a whole-body RF coil 56. A transceiver module 58 in the system control 32 produces pulses which are amplified by an RF amplifier 60 and coupled to the RF coil 56 by a transmit/receive switch 62. The resulting signals emitted by the excited nuclei in the patient may be sensed by the same RF coil 56 and coupled through the transmit/receive switch 62 to a preamplifier 64. The amplified MR signals are demodulated, filtered, and digitized in the receiver section of the transceiver 58. The transmit/receive switch 62 is controlled by a signal from the pulse generator module 38 to electrically connect the RF amplifier 60 to the coil 56 during the transmit mode and to connect the preamplifier 64 to the coil 56 during the receive mode. The transmit/receive switch 62 can also enable a separate RF coil (for example, a surface coil) to be used in either the transmit or receive mode.
The MR signals picked up by the RF coil 56 are digitized by the transceiver module 58 and transferred to a memory module 66 in the system control 32. A scan is complete when an array of raw k-space data has been acquired in the memory module 66. This raw k-space data is rearranged into separate k-space data arrays for each image to be reconstructed, and each of these is input to an array processor 68 which operates to Fourier transform the data into an array of image data. This image data is conveyed through the serial link 34 to the computer system 20 where it is stored in memory. In response to commands received from the operator console 12 or as otherwise directed by the system software, this image data may be archived in long term storage or it may be further processed by the image processor 22 and conveyed to the operator console 12 and presented on the display 16.
Embodiments of the invention correct high order eddy current (HOEC) induced diffusion gradient direction dependent distortion in Diffusion-Weighted Echo Planar Imaging (DW-EPI). As used herein, “high order” means spatial order higher than or equal to 2, as compared to linear and constant orders, which mean order 1 and 0, respectively. However, embodiments of the invention can also be applied to linear and constant orders as well. The distortions due to HOEC may strongly affect the acquired data, especially for body applications where large FOV is used and large slice coverage is desired. As discussed herein, a system calibration may be used to characterize eddy currents of spatial orders less than or equal to P, where P is usually 3 to 5, but can be any order in general. DW-EPI pulse sequence with correction amplitudes for gradients in readout, phase encoding, and slice axes, and receiver frequency on a per-slice basis may be played to prospectively remove the effect of the quasi-linear HOEC terms.
Referring to
To spatially encode echo signal 76 in accordance with echo planar imaging, the sequence shown in
Still referring to
At block 98, data from the HOEC calibration of block 96 are first preprocessed and then fitted to mathematical models to characterize the underlying HOEC according to an algorithm based on which of the abovementioned calibration methods is used in block 96.
Referring to
The resulting basis coefficients are then temporal fitted along the time axis at block 128 using a single-exponential or multi-exponential model. The end results of HOEC data processing is a set of (αmn, τmn) pairs, where αmn are basis coefficients and τmn are time constants (for notational simplicity, a single exponential is assumed) of the nth spatial basis function Bn(x, y, z), n=1,2, . . . , N, with diffusion donor axis m, where m is the x, y, or z axis. Bn(x, y, z) are assumed to be polynomial bases for convenience of discussion. Note that this is without any loss of generalization because spherical harmonic bases are linear combinations of polynomial bases and can be easily converted into polynomials. Note also that the total number of bases N=(P+1)(P+2)(P+3)/6. The (αmn, τmn) pairs are saved or stored on the host computer of the scanner for future use at block 130.
Referring to
Similar to that described above with respect to HOEC data processing algorithm 116, the resulting basis coefficients are then temporal fitted along the time axis at block 138, and a set of (αmn, τmn) pairs is generated. The (αmn, τmn) pairs are saved or stored on the host computer of the scanner for future use at block 140.
Similar to the HOEC calibration scan of block 96 of technique 94, the HOEC data processing performed in HOEC data processing algorithms 116 and 118 only needs to be done once per system installation. However, algorithms 116 and 118 can be performed as frequently as needed.
Referring back to
Note that R is a unitary matrix (i.e., R−1=RT).
At block 146, the (αmn, τmn) pairs determined via block 98 from the HOEC calibration scan at block 96 of technique 94 are obtained, and the pulse sequence type and sequence timing dependent constant, βnm, is calculated at block 148.
Derivation of βmn can either be analytical or using convolution. Although all gradient waveforms can be included to obtain βnm, contributions from the diffusion gradients are often dominant, which allow for simplified analysis to obtain βmn. For example, when single spin echo DW-EPI is used such as that shown in
where t1, t2, and t3 are sequence timing related constants shown in
At block 149, the HOEC physical basis coefficients dn(t) for the nth basis function βn(x, y, z) at time t after the last diffusion gradient are calculated based on the equation:
where Gm is the x, y, or z component of the diffusion gradient amplitude.
At block 150, the transpose of another rotation matrix, the basis rotation matrix F, is applied to d1(t), d2(t), . . . , dN(t) to convert them into HOEC logical basis coefficients c1(t), c2(t), . . . , cN(t):
where “T” denotes matrix transpose. F is an N×N matrix that transforms polynomial bases from logical to physical coordinates. The actual form of F depends on the polynomial order and how the basis functions are numbered. Without loss of generality, the bases are in the following order: 1, x, y, z, x2,xy, xz, y2, yz, z2, x3, x2y, x2z, xy2, xyz, xz2, y3, y2z, yz2, z3, . . . , where lower order bases lead higher order bases, and for bases that have the same polynomial order, the ones that have higher x exponent lead, or, in case of the same x exponent, the ones that have higher y exponent lead. F can be determined by the relationship between Bn(x, y, z) and Bn(u, v, w), where
For example, for up to 3rd order polynomials,
At block 151, all HOEC logical basis coefficients are saved for future use.
Referring back to
Image distortion due to HOEC fields can be corrected using a field map based method in image reconstruction according to this embodiment. Algorithm 162 does distortion correction in the image domain on a per-slice basis. For simplicity, the w dependency in the notation is dropped. Denote the eddy current field as f(u, v). At w=w0, the value of the HOEC related field map f(x, y) can be calculated at block 164 by the equation:
where the summation is done over all the spatial basis functions and t0 is the time point at which the HOEC field is approximated. The choice of t0 can be arbitrary, but it is preferable to be chosen at the time when the k-space center data is acquired (i.e., at the echo time).
The eddy current field is then normalized by the effective gradient in the phase encoding axis GPE to obtain the pixel shift map h(u, v) at block 166 by the equation:
where GPE=1/(γTL) with γ being the gyromagnetic ratio of the nucleus of interest, T being the EPI echo spacing and L being the field of view in the phase encoding axis.
Denote the image under normal image reconstruction (i.e., without retrospective correction) as Idistorted(u, v). The image after retrospective correction Icorrected(u, v) can be obtained at block 168 by the equation:
where the first term is the intensity correction and the second term is the geometry correction. Note that both Idistorted(u, v) and Icorrected(u, v) could be magnitude or complex images. According to Eqns. 3 and 4, h(u, v) are linear combinations of Bn(u, v, w0). Because Bn(u, v, w0) are polynomial bases, it is straightforward to obtain the analytical form of ∂h(u, v)/∂v, which makes it easy to obtain the intensity correction factor in Eqn. 5. Evaluation of the geometry correction term can be accomplished by image domain interpolation. HOEC-corrected image results from performing algorithm 162.
One can see that this technique can be applied to multishot EPI (top-down or bottom-up interleaved acquisition) as well. For S-shot EPI, the effective echo spacing becomes T/S and GPE in Eqn. 4 becomes S/(γTL), which scales the overall distortion by a factor of 1/S. Note that multishot EPI can reduce TE versus single shot EPI, leading to a different t0 in Eqn. 3.
Referring again to
According to embodiments of the invention, compensation of HOEC-induced distortions for DW-EPI can make single spin echo DW-EPI more practical. While, single spin echo has SNR and scan time benefits over dual spin echo DWI, embodiments of the invention can also be applied to dual spin echo and other variants of DW-EPI sequences to reduce distortion. Embodiments of the invention can produce a significant leverage of whole body DWI, which may have a long scan time, low SNR, and large image distortions. Brain DWI may benefit as well, especially for high b-value, large parallel imaging factor cases where SNR can be a problem.
A technical contribution for the disclosed method and apparatus is that it provides for a computer implemented correction of high order eddy-current-induced distortion in diffusion-weighted echo planar imaging.
One skilled in the art will appreciate that embodiments of the invention may be interfaced to and controlled by a computer readable storage medium having stored thereon a computer program. The computer readable storage medium includes a plurality of components such as one or more of electronic components, hardware components, and/or computer software components. These components may include one or more computer readable storage media that generally stores instructions such as software, firmware and/or assembly language for performing one or more portions of one or more implementations or embodiments of a sequence. These computer readable storage media are generally non-transitory and/or tangible. Examples of such a computer readable storage medium include a recordable data storage medium of a computer and/or storage device. The computer readable storage media may employ, for example, one or more of a magnetic, electrical, optical, biological, and/or atomic data storage medium. Further, such media may take the form of, for example, floppy disks, magnetic tapes, CD-ROMs, DVD-ROMs, hard disk drives, and/or electronic memory. Other forms of non-transitory and/or tangible computer readable storage media not list may be employed with embodiments of the invention.
A number of such components can be combined or divided in an implementation of a system. Further, such components may include a set and/or series of computer instructions written in or implemented with any of a number of programming languages, as will be appreciated by those skilled in the art. In addition, other forms of computer readable media such as a carrier wave may be employed to embody a computer data signal representing a sequence of instructions that when executed by one or more computers causes the one or more computers to perform one or more portions of one or more implementations or embodiments of a sequence.
Therefore, according to an embodiment of the invention, an MRI apparatus comprises a magnetic resonance imaging (MRI) system having a plurality of gradient coils positioned about a bore of a magnet, and an RF transceiver system and an RF switch controlled by a pulse module to transmit RF signals to an RF coil assembly to acquire MR images. The MRI apparatus also comprises a computer programmed to acquire calibration data from a calibration scan, the calibration data configured to characterize high order eddy-current-generated magnetic field error of an imaging system. The computer is also programmed to process the calibration data to generate a plurality of basis coefficients and a plurality of time constants and to calculate a plurality of basis correction coefficients based on the plurality of basis coefficients, the plurality of time constants, and gradient waveforms in a given pulse sequence. The computer is further programmed to execute a diffusion-weighted imaging scan that comprises application of a DW-EPI pulse sequence to acquire MR data from an imaging subject and reconstruction of an image based on the acquired MR data. The computer is also programmed to apply high order eddy-current-generated magnetic field error correction during image reconstruction configured to reduce high order eddy-current-induced distortion in the reconstructed image.
According to another embodiment of the invention, a method for correcting high order eddy-current-induced distortions in diffusion-weighted echo planar imaging (DW-EPI) comprises acquiring calibration data from a calibration scan, the calibration data configured to characterize high order eddy currents of an imaging system, processing the calibration data to generate a plurality of basis coefficients and a plurality of time constants, and calculating a plurality of basis correction coefficients based on the plurality of basis coefficients and based on the plurality of time constants. The method also comprises applying a DW-EPI pulse sequence to acquire MR data from an imaging subject, reconstructing an image based on the acquired MR data, and wherein the reconstructing the image comprises applying high order eddy-current-generated magnetic field error correction configured to reduce high order eddy-current-induced distortion in the image.
According to yet another embodiment of the invention, a non-transitory computer readable medium having stored thereon a computer program comprising a set of instructions, which, when executed by a computer, causes the computer to acquire calibration data from a calibration scan configured to characterize high order eddy current generated magnetic field error of an imaging system and to process the calibration data. The set of instructions also causes the computer to generate a plurality of basis coefficients and a plurality of time constants based on the processed calibration data and to calculate a plurality of basis correction coefficients based on the plurality of basis coefficients, the plurality of time constants, and gradient waveforms in a DW-EPI pulse sequence. The set of instructions also causes of the computer to apply the DW-EPI pulse sequence to acquire MR data from an imaging subject, to reconstruct an image based on the acquired MR data, and to apply high order eddy-current-generated magnetic field error correction during reconstruction of the image configured to reduce high order eddy current induced distortion in the reconstructed image.
This written description uses examples to disclose embodiments of the invention, including the best mode, and also to enable any person skilled in the art to practice the embodiments of the invention, including making and using any devices or systems and performing any incorporated methods. The patentable scope of embodiments of the invention is defined by the claims, and may include other examples that occur to those skilled in the art. Such other examples are intended to be within the scope of the claims if they have structural elements that do not differ from the literal language of the claims, or if they include equivalent structural elements with insubstantial differences from the literal languages of the claims.
The present application is a non-provisional of, and claims priority to, U.S. Provisional Patent Application Ser. No. 61/476,936, filed Apr. 19, 2011, the disclosure of which is incorporated herein by reference.
Number | Date | Country | |
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61476936 | Apr 2011 | US |