TGF-.beta. induced gene

TECHNICAL FIELD OF THE INVENTION
The present invention describes a novel TGF-.beta. induced gene, .beta.ig-h3, and the protein encoded by this induced gene, .beta.IG-H3, produced in response to TGF-.beta. mediated growth inhibition of specific human cell lines.
BACKGROUND OF THE INVENTION
Transforming growth factor-.beta.1 (TGF-.beta.1) is a multifunctional regulator of cell growth and differentiation. It is capable of causing diverse effects such as inhibition of the growth of monkey kidney cells, (Tucker, R. F., G. D. Shipley, H. L. Moses & R. W. Holley (1984) Science 226:705-707) inhibition of growth of several human cancer cell lines, (Roberts, A. B., M. A. Anzano, L. M. Wakefiled, N. S. Roches, D. F. Stern & M. B. Sporn (1985) Proc. Natl. Acad. Sci. USA 82:119-123; Ranchalis, J. E., L. E. Gentry, Y. Agawa, S. M. Seyedin, J. McPherson, A. Purchio & D. R. Twardzik (1987) Biochem. Biophys. Res. Commun. 148:783-789) inhibition of mouse keratinocytes, (Coffey, R. J., N. J. Sipes, C. C. Bascum, R. Gravesdeal, C. Pennington, B. E. Weissman & H. L. Moses (1988) Cancer Res. 48:1596-1602; Reiss, M. & C. L. Dibble (1988 In Vitro Cell. Dev. Biol. 24:537-544) stimulation of growth of AKR-2B fibroblasts (Tucker, R. F., M. E. Olkenant, E. L. Branum & H. L. Moses (1988) Cancer Res. 43:1581-1586)and normal rat kidney fibroblasts, (Roberts, A. B., M. A. Anzano, L. C. Lamb, J. M. Smith & M. B. Sporn (1981) Proc. Natl. Acad. Sci. USA 78:5339-5343) stimulation of synthesis and secretion of fibronecfin and collagen, (Ignotz, R. A. & J. Massague (1986) J. Biol. Chem. 261:4337-4345; Centrella, M., T. L. McCarthy & E. Canalis (1987) J. Biol. Chem. 262:2869-2874) induction of cartilage-specific macromolecule production in muscle mesenchymal cells, (Seyedin, S. M., A. Y. Thompson, H. Bentz, D. M. Rosen, J. McPherson, A. Contin, N. R. Siegel, G. R. Galluppi & K. A. Piez (1986) J. Biol. Chem. 261:5693-5695) and growth inhibition of T and B lymphocytes. (Kehrl, J. H., L. M. Wakefiled, A. B. Roberts, S. Jakeoview, M. Alvarez-Mon, R. Derynck, M. B. Sporn & A. S. Fauci (1986) J. Exp. Med. 163:1037-1050; Kehrl, J. H., A. B. Roberts, L. M. Wakefield, S. Jakoview, M. B. Sporn & A. S. Fauci (1987) J. Immunol. 137:3855-3860; Kasid, A., G. I. Bell & E. P. Director (1988) J. Immunol. 141:690-698; Wahl, S. M., D. A. Hunt, H. L. Wong, S. Dougherty, N. McCartney-Francis, L. M. Wahl, L. Ellingsworth, J. A. Schmidt, G. Hall, A. B. Roberts & M. B. Sporn (1988) J. Immunol. 140:3026-3032)
Recent investigations have indicated that TGF-.beta.1 is a member of a family of closely related growth-modulating proteins including TGF-.beta.2, (Seyedin, S. M., P. R. Segarini, D. M. Rosen, A. Y. Thompson, H. Bentz & J. Graycar (1987) J. Biol. Chem. 262:1946-1949; Cheifetz, S., J. A. Weatherbee, M. L.-S. Tsang, J. K. Anderson, J. E. Mole, R. Lucas & J. Massague (1987) Cell 48:409-415; Ikeda, T., M. M. Lioubin & H. Marquardt (1987) Biochemistry 26:2406-2410) TGF-.beta.1, (TenDijke, P., P. Hansen, K. Iwata, C. Pieler & J. G. Foulkes (1988) Proc. Natl. Acad. Sci. USA 85:4715-4719; Derynck, R., P. Lindquist, A. Lee, D. Wen, J. Tamm, J. L. Graycar, L Rhee, A. J. Mason, D. A. Miller, R. J. Coffey, H. L. Moses & E. Y. Chen (1988) EMBO J. 7:3737-3743; Jakowlew, S. B., P. J. Dillard, P. Kondaiah, M. B. Sporn & A. B. Roberts (1988) Mol. Endocrinology. 2:747-755) TGF-.beta.4, (Jakowlew, S. B., P. J. Dillard, M. B. Sporn & A. B. Roberts (1988) Mol. Endocrinology. 2:1186-1195) Mullerian inhibitory substance, (Cate, R. L., R. J. Mattaliano, C. Hession, R. Tizard, N. M. Faber, A. Cheung, E. G. Ninfa, A. Z. Frey, D. J. Dash, E. P. Chow, R. A. Fisher, J. M. Bertonis, G. Torres, B. P. Wallner, K. L. Ramachandran, R. C. Ragin, T. F. Manganaro, D. T. Maclaughlin & P. K, Donahoe (1986) Cell 45:685-698) and the inhibins. (Mason, A. J., J. S. Hayflick, N. Ling, F. Esch, N. Ueno, S.-Y. Ying, R. Guillemin, H. Niall & P. H. Seeburg (1985) Nature 318:659-663)
TGF-.beta.1 is a 24-kDa protein consisting of two identical disulfide-bonded 12 kD subunits. (Assoian, R. K., A. Komoriya, C. A. Meyers, D. M. Miller & M. B. Sporn (1983) J. Biol. Chem. 258:7155-7160; Frolik, C. A., L. L. Dart, C. A. Meyers, D. M. Miller & M. B. Sporn (1983) Proc. Natl. Acad. Sci. USA 80:3676-3680; Frolik, C. A., L. M. Wakefiled, D. M. Smith & M. B. Sporn (1984) J. Biol. Chem. 259:10995-11000) Analysis of cDNA clones coding for human, (Derynck, R., J. A. Jarrett, E. Y. Chem, D. H. Eaton, J. R. Bell, R. K. Assoian, A. B. Roberts, M. B. Sporn & D. V. Goeddel (1985) Nature 316:701-705) murine, (Derynck, R., J. A. Jarrett, E. Y. Chem, & D. V. Goeddel (1986) J. Biol. Chem. 261:4377-4379) and simian (Sharples, K., G. D. Plowman, T. M. Rose, D. R. Twardzik & A. F. Purchio (1987) DNA 6:239-244) TGF-.beta.1 indicates that this protein is synthesized as a larger 390 amino acid pre-pro-TGF-.beta.1 precursor; the carboxyl terminal 112 amino acid portion is then proteolyfically cleaved to yield the TGF-.beta.1 monomer.
The simian TGF-.beta.1 cDNA clone has been expressed to high levels in Chinese hamster ovary (CHO) cells. Analysis of the proteins secreted by these cells using site-specific antipeptide antibodies, peptide mapping, and protein sequencing revealed that both mature and precursor forms of TGF-.beta. were produced and were held together, in part, by a complex array of disulfide bonds. (Gentry, L. E., N. R. Webb, J. Lim, A. M. Brunner, J. E. Ranchalis, D. R. Twardzik, M. N. Lioubin, H. Marquardt & A. F. Purchio (1987) Mol. Cell Biol. 7:3418-3427; Gentry, L. E., M. N. Lioubin, A. F. Purchio & H. Marquardt (1988) Mol. Cell. Biol. 8:4162-4168) Upon purification away from the 24kD mature rTGF-.beta.1, the 90 to 110 kD precursor complex was found to consist of three species: pro-TGF.beta.1, the pro-region of the TGF-.beta.1 precursor, and mature TGF-.beta.1. (Gentry, L. E., N. R. Webb, J. Lim, A. M. Brunner, J. E. Ranchalis, D. R. Twardzik, M. N. Lioubin, H. Marquardt & A. F. Purchio (1987) Mol. Cell Biol. 7:3418-3427; Gentry, L. E., M. N. Lioubin, A. F. Purchio & H. Marquardt (1988) Mol. Cell. Biol. 8:4162-4168) Detection of optimal biological activity required acidification before analysis, indicating that rTGF-.beta.1 was secreted in a latent form.
The pro-region of the TGF-.beta.1 precursor was found to be glycosylated at three sites (Ash 82, Asn 136, and Asn 176) and the first two of these (Asn 82 and Ash 136) contain mannose-6-phosphate residues. (Brunner, A. M., L. E. Gentry, J. A. Cooper & A. F. Purchio (1988) Mol. Cell Biol. 8:2229-2232; Purchio, A. F., J. A. Cooper, A. M. Brunner, M. N. Lioubin, L. E. Gentry, K. S. Kovacina, R. A. Roth & H. Marquardt (1988) J. Biol. Chem. 263:14211-14215) In addition, the rTGF-.beta.1 precursor is capable of binding to the mannose-6-phosphate receptor and may imply a mechanism for delivery to lysomes where proteolytic processing can occur. (Kornfeld, S. (1986) J. Clin. Invest. 77: 1-6)
TGF-.beta.2 is also a 24-kD homodimer of identical disulfide-bonded 112 amino acid subunits (Marquardt, H., M. N. Lioubin & T. Ikeda (1987) J. Biol. Chem. 262:12127-12131). Analysis of cDNA clones coding for human (Madisen, L., N. R. Webb, T. M. Rose, H. Marquardt, T. Ikeda, D. Twardzik, S. Seyedin & A. F. Purchio (1988) DNA 7:1-8; DeMartin, R., B. Plaendler, R. Hoefer-Warbinek, H. Gaugitsch, M. Wrann, H. Schlusener, J. M. Seifert, S. Bodmer, A. Fontana & E. Hoefer. EMBO J. 6:3673-3677) and simian (Hanks, S. K., R. Armour, J. H. Baldwin, F. Maldonado, J. Spiess & R. W. Holley (1988) Proc. Natl. Acad. Sci. USA 85:79-82) TGF-.beta.2 showed that it, too, is synthesized as a larger precursor protein. The mature regions of TGF-.beta.1 and TGF-.beta.2 show 70% homology, whereas 30% homology occurs in the pro-region of the precursor. In the case of simian and human TGF-.beta.2 precursor proteins differing by a 28 amino acid insertion in the pro-region; mRNA coding for these two proteins is thought to occur via differential splicing (Webb, N. R., L. Madisen, T. M. Rose & A. F. Purchio (1988) DNA 7:493-497).
The effects of TGF-.beta. are thought to be mediated by the binding to specific receptors present on the surface of most cells (Massague, J. et at. (1985) J. Biol. Chem. 260:2636-2645; Segarini, P. R. et at. (1989) Mol. Endocrino. 3:261-272; Tucker, R. F., et at. (1984) Proc. Natl. Acad. Sci. USA 81:6757-6761; Wakefield, L. M., et at. (1987) J. Cell Biol. 105:965-975). Chemical crosslinking of [.sup.125 I]-labeled TGF-.beta. to cell surface components has identified three receptor size classes having molecule weights of 53-70 kDA (type I receptor), 80-120 kDa (type II receptor) and 250-350 kDa (type III receptor). The type I and II receptors have been implicated in signal transducfion (Boyd, F. T. et at. (1989) J. Biol. Chem. 264:2272-2278; Laiho, M., et al. (1990) J. Biol. Chem. 265:18518-18524) while the type III receptor has been suggested to act as a storage protein (Segarini, P. R. et al. (1989) Mol. Endocrino. 3:261- 272). Little is known concerning signal transduction mechanisms which occur after receptor-ligand interaction.
The pleiotrophic effects of TGF-.beta. may be due to its ability to affect the transcription of other genes. TGF-.beta. has been shown to induce fos, myc and sis in AKR-2B cells (Leof, E. B., et al. (1986) Proc. Natl. Acad. Sci. USA 83:1453-1458):1453-1458) enhance expression of c-jun B in A549 cells (Pertovaara, L., et al. (1989) Molecular and Cellular Biology 9:1255-1264), increase the mRNA for matrix proteins (Penttinen, R. P., et al. (1988) Proc. Natl. Acad. Sci. USA 85:1105-1110), IL-6 (Elias, J. A., et al. (1991) J. Immunol. 146:3437-3446) and EGF-receptors (Thompson, K. L. et al. (1988) J. Biol. Chem. 263:19519-19528) and decrease expression of PDGF receptor .alpha. subunits (Battegay, E. J., et al. (1990) Cell 63:515-524). It alters the pattern of integrin expression in osteosarcoma cells (Heino, J., et al. (1989) J. Biol. Chem..264:21806-21813) and decreases the express of c-myc in keratinocytes (Coffey, R. J. et al. (1988b) Cancer Res. 48:1596-1602). TGF-.beta. induces expression of Il-1.beta., TNF-.alpha., PDGF and bFGF in human peripheral blood monocytes (McCartney-Francis, N., et at. (1991) DNA and Cell Biology 10:293-300).
SUMMARY OF THE INVENTION
The present invention is directed to a novel protein and gene induced by transforming growth factor beta (TGF-.beta.) in mammalian cells.
In order to identify novel genes that encode protein products which might be involved in mediating some of the effects of TGF-.beta., a cDNA library was constructed from mRNA isolated from mammalian cells, such as human lung adenocarcinoma cells, which had been growth arrested by exposure to TGF-.beta.. Several clones were isolated. One clone, termed TGF-.beta. induced gene-h3 (.beta.ig-h3) encoded a novel protein, .beta.IG-H3, containing 683 amino acid residues.
In the present invention a TGF-.beta. induced protein is produced in growth arrested mammalian cells and preferably contains about 683 amino acid residues. The TGF-.beta. induced protein preferably contains four homologous repeat regions of approximately 140 amino acids each and has an Arg-Gly-Asp sequence near its earboxy terminus. Treatment of mammalian cells such as human adenocarcinoma cells and embryonic mesenchymal cells with TGF-.beta. produces a 10 to 20 fold increase in these cells of a 3.4 kb RNA construct that encodes a protein of this invention.
The present invention is further directed to the protein .beta.IG-H3 which contains a 683 amino acid residue sequence corresponding to Sequence ID Number 2 and which contains an Arg-Gly-Asp at residues 642-644 of the amino acid sequence depicted in FIG. 5. .beta.IG-H3 contains four homologous repeat regions that share at least 16% homology with each other.
A method for inhibiting the growth of tumor cells is contemplated by the present invention. The induction, expression and/or secretion of .beta.IG-H3 has been shown to inhibit the growth, colony formation and appearance of tumor cells. In the method of the present invention, contacting tumor cells with .beta.IG-H3 inhibits the growth of these cells.
The present invention is also directed to a nucleotide sequence that encodes a gene whose expression is strongly induced by TGF-.beta.. The nucleotide sequence of the present invention can induce the production of a RNA transcript of about 3.4 kb, and preferably encodes the expression of .beta.IG-H3.

DESCRIPTION OF THE FIGURES
In the drawings:
FIGS. 1A-D illustrate the expression .beta.IG-H3 in A549 cells after treatment with TGF-.beta.1 and TGF-.beta.2. Confluent dishes of A549 cells grown in DMEM+10% FBS were split 1:10. Twenty hours later, they were treated with 20 ng/ml rTGF-.beta.1 (A and C) or rTGF-.beta.2 [D] for 72 hours. Total RNA was isolated and 25 .mu.g was fractionated on an agarose-formaldehyde gel and analyzed by Northern blotting using [.sup.32 P]-labeled .beta.IG-H3 probe. Lane 1, RNA from untreated cells; lane 2, RNA from TGF-.beta. treated cells. Exposure time for A and D, 10 hours; exposure time for C, 3 days. Panel B is a photograph of the gel in panel A stain with methylene blue. Bands were quantitated using a Molecular Dynamics Phosphoimager.
FIG. 2 illustrates the time course for induction of .beta.IG-H3 mRNA by TGF-.beta.1. Confluent dishes of A549 cells were split 1:10. Twenty hours later, they were treated with TGF-.beta.1 (20 ng/ml) for 6 hours (lane 2), 24 hours (lane 3), 48 hours (lane 4), 72 hours (lane 5), or 96 hours (lane 6): RNA was isolated and hybridized to [.sup.32 -P]-labeled .beta.ig-h3 probe. Lane 1 contains RNA from untreated cells.
FIG. 3 illustrates the removal of TGF-.beta.1 from the culture media of A549 cells leads to a decrease in synthesis of .beta.ig-h3 RNA. A549 cells were treated with TGF-.beta.1 (20 ng/ml) for 3 days. Cells were then washed and grown in complete medium without TGF-.beta.1 for 24 hours (lane 2), 48 hours (lane 3), 72 hours (lane 4) or 3 weeks (lane 5). RNA was extracted and analyzed by Northern blotting using [.sup.32 -P]-labeled .beta.ig-h3 probe. Lane 1 contains RNA from A549 cells treated for 3 days with TGF-.beta.1.
FIG. 4 illustrates the determination of .beta.ig-h3 mRNA half-life. A549 cells were treated with TGF-.beta. (20 ng/ml) for 48 hours. Actinomycin D (10 ng/ml) was then added and RNA was extracted at the indicated times and analyzed by Northern blotting with [.sup.32 -P]-labeled .beta.ig-h3 probe. Bands were quantitated using a Molecular Dynamics Phosphoimager and are plotted as percentage of cpm remaining in the 3.4 kb .beta.ig-h3 RNA band. .smallcircle.--.smallcircle., untreated cells; -- , TGF-.beta. treated cells.
FIG. 5 illustrates the nucleotide and deduced amino acid sequence of .beta.IG-H3. Sequencing was performed as described (Sanger, F., et al. (1977) Proc. Natl. Acad. Sci. USA 74:5463-5467) and two dependent clones were sequenced for each region. The signal sequence is overlined and arrows mark predicted cleavage sites: the RGD sequence is boxed. Repeats 1 through 4 are bracketed and a polyadenylation signal at nucleotide 2625 is indicated (horizontal bracket).
FIG. 6A illustrates the 4 homologous domains of .beta.IG-H3 compared with the third repeats from drosophila fasciclin-I (DrF-3), grasshopper fasciclin-I (GrF-3), and the carboxy terminal half of the Mycobacterium bovus protein Mpb70. Boxed amino acids are identical to at least 2 others at that same position.
FIG. 6B illustrates the 4 repeats of .beta.IG-H3 directly compared. Boxed amino acids are identical with at least 1 other at that same position. Multiple alignments were generated using the program Pileup of UW/GCG software.
FIGS. 7A-C illustrate the inhibition of tumor cell colony formation produced by insertion of DNA encoding for .beta.IG-H3. A549 tumor cells were transfected with .beta.ig-h3 DNA and the development of cell colonies were monitored. A549 cells transfected with a plasmid encoding the neomycin resistance gene (pNEO) and then divided into three groups that were additionally transfected, respectively, with A) calf thymus DNA (controls); or B) .beta.ig-h3 under the control of the metallothionine promoter (pMT/H3); or C) .beta.ig-h3 under the control of the CMV promoter (.pi.H3M/H3).

DESCRIPTION OF PREFERRED EMBODIMENTS
The present invention is directed to a nucleotide sequence and a protein that is induced in mammalian cells in response to TGF-.beta..
The arrest of the growth of specific mammalian cells, such as human lung adenocarcinoma cells, by treatment with TGF-.beta. resulted in the increased induction of a novel gene product. TGF-.beta. refers to a family of highly-related dimeric proteins which are known to regulate the growth and differentiation of many cell type. As used herein, the term "TGF-.beta." refers to any member of the family of transforming growth factor beta which include TGF-.beta.1, TGF-.beta.2, TGF-.beta.3, TGF-.beta.4, TGF-.beta.5 as well as the TGF-.beta.1/.beta.2 hybrid molecules, designated 5-.beta..
TGF-.beta. is known to regulate the transcription of several genes, such as the genes encoding c-myc, c-sis, and the platelet-derived growth factor receptor. In the present invention, an attempt was made to identify novel genes whose protein products could be involved in mediating some of the pleiotropic effects of TGF-.beta.. As a result of the present invention a new gene product has been identified in mammalian cells that have been growth arrested by TGF-.beta..
All amino acid residues identified herein are in the natural of L-configuration. In keeping with standard polypeptide nomenclature, abbreviations for amino acid residues are as follows:
______________________________________ SYMBOLAMINO ACID 3-Letter 1-Letter______________________________________Alanine Ala AArginine Arg RAsparagine Asn NAspartic acid Asp DAspartic acid or Asparagine Asx BCysteine Cys CGlutamine Gln QGlutamic acid Glu EGlycine Gly GGlutamic acid or Glutamine Glx ZHistidine His HIsoleucine Ile ILeucine Leu LLysine Lys KMethionine Met MPhenylalanine Phe FProline Pro PSerine Ser SThreonine Thr TTryptophan Trp WTyrosine Tyr YValine Val V______________________________________
In the present invention, a substantially pure protein is isolated. This protein is produced in a mammalian cell in response to contacting the cells with sufficient TGF-.beta. to arrest the growth of the mammalian cell.
As used herein the term "mammalian cell" refers to cells derived from a mammal, or mammalian tumor, including human cells such as human lung adenocarcinoma cells, human embryonic palatal mesenchymal cells and human prostatic adenocarcinoma cells.
As used herein the term "induced" refers to the stimulation, promotion and/or amplification of transcription or translation in a target cell. In a preferred embodiment of the present invention either RNA or protein production can be induced by TGF-.beta. in a mammalian cell.
In a particularly preferred embodiment, TGF-.beta. induced protein of the present invention has an amino acid residue sequence of about 683 amino acid residues.
When mammalian cells, such as human lung adenocarcinoma are treated with TGF-.beta.1, growth inhibition of the cells resulted. A cDNA library was constructed and screened in order to isolate a clone which displayed increased hybridization to a cDNA probe prepared from TGF-.beta.1 treated cells. One clone was isolated and designated .beta.ig-h3.
It was found that TGF-.beta.1 and TGF-.beta.2 each induced .beta.ig-h3 in cells. The induction was reversible and resulted from an increase in transcription. Analysis of the induced .beta.ig-h3 DNA revealed an open reading frame that encoded a novel 683 amino acid protein, .beta.IG-H3, which contained a secretory leader signal sequence and an Arg-Gly-Asp sequence. .beta.IG-H3 contained four internal repeat regions. These repeat regions display limited homology with short regions of grasshopper and drosophila fasciclin-I and Mpb70 from mycobacterium bovus. Fasciclin-I is a surface recognition glycoprotein expressed on subsets of axon bundles in insect embryos. Fasciclin-I contains four homologous 150 amino acid domains and has approximately 40% homology between grasshopper and drosophila (Zimmet al. (1988) Cell 53:577-583). It is thus considered in this invention that .beta.ig-h3 may encode a novel surface recognition protein. As such, and as proposed for fasciclin-I, the four homologous repeats could suggest a tetrameric structure with two binding sites, one at each intrachain dimer. This structure allows one .beta.IG-H3 molecule to bind to a surface protein on two different cells. Additionally, the Arg-Gly-Asp sequence in .beta.IG-H3, which is not present in fasciclin-I, may allow for interactions with various integrins.
.beta.IG-H3 represents a new gene product induced by TGF-.beta. and may illumimate the pleiotropic effects of TGF-.beta.as, partly, being due to its ability to regulate gene transcription. It has recently been shown that growth inhibition by TGF-.beta.is linked to inhibition of phosphorylation of pRB, the product of the retinoblastoma susceptibility gene (Pietenpol, et al. (1990) Cell 61:777-75; Laiko et at. (1990) Cell 62:175-185). If .beta.IG-H3 is involved in cell surface recognition, it may participate in cell-cell communication and in the transmission of intracellular signals that are involved in negative growth control.
The present invention is further described by the following Examples which are intended to be illustrative and not limiting.
EXAMPLE 1
Identification of .beta.ig-h3 and Induction By TGF-.beta.
Several human cell lines were cultured and used in these studies. A549 and H2981 (both human lung adenocarcinoma) cells, and the human breast carcinoma cell lines (MDA 453, MDA468 and 293) were grown in Dulbecco's Modified Eagle's medium (DMEM) plus 10% fetal bovine serum FBS). The human breast carcinoma line MCF-7 was grown in DMEM+10% FBS containing 60 ng/ml of insulin, and human prostatic adenocarcinoma cells (PC-3) were grown in a mixture of DMEM and Hank's F-12 medium (1:1) containing 10% FBS. Several routine and general methological procedures were utilized and are described in the articles cited herein, all of which are incorporated by reference.
Confluent dishes of A549 cells were split 1:10. Twenty hours later, they were treated with 20 ng/ml recombinant TGF-.beta.1 in complete medium for 72 hours. This resulted in an 80-90% inhibition of DNA synthesis. A549 cells which were not treated with TGF-.beta.1 were used as controls. Poly (A) containing RNA was extracted and a cDNA library was constructed in .lambda. gt-10 by the method described in Webb et al. (1987) DNA 6:71-78, which is incorporated herein by reference. Duplicate filters were screened with [.sup.32 -P]-labeled cDNA from treated and untreated cells. Plaques showing increased hybridization to the treated probe were purified through the tertiary stage and the cDNA inserts were subcloned into pEMBL, as described in Dente et al. (1983) Nucleic Acids Res. 11:1645-1654. Several clones were isolated and one clone, p.beta.ig-h3a, was chosen for further study.
DNA sequence analysis of p.beta.ig-h3 detects a major transcript of 3.4 kb which is induced about 10-fold in A549 cells after a 72 hours with TGF-.beta.1 (FIG. 1A). A longer exposure of FIG. 1A demonstrates that the .beta.ig-h3 transcript can be detected at low levels in untreated cells (FIG. 1C) .beta.ig-h3 is also induced by TGF-.beta.2, as shown in FIG. 1D, and thus appears to be a TGF-.beta. induced gene. A time course induction is presented in FIG. 2 and indicated that maximal stimulation of .beta.ig-h3 by TGF-.beta.1 in A549 cells occurred after 48 hours of TGF-.beta.1 treatment (a 20-fold increase above untreated cells).
Noticeable morphological changes of A459 cells occur upon TGF-.beta. treatment. The cells appear larger, more spread out and assume a flattened morphology. These phenotypic changes are reversed upon removal of TGF-.beta. and regrowth of the cells in complete media.
Removal of TGF-.beta.1 from the culture medium resulted in a decrease in the expression of .beta.ig-h3 to the levels found in untreated cells (FIG. 3) This finding is consistent with the reversible growth inhibition of those cells.
Total RNA was extracted from both untreated cells and from cells treated with TGF-.beta., as described above. The RNA was fractionated on a 1% agarose-formaldehyde gel, according to the method of Lehrach et al. (1977) Biochemistry 16:4743-4751, transferred to a nylon membrane (Hybond N, Amersham) and hybridized to [.sup.32 -P]-labeled probe, according to the method described in Madisen et at. (1988) DNA 7:1-8. The bands were quantitated using a Molecular Dynamics Phosphoimager.
The increase in .beta.ig-h3 RNA could be due to either an increase in transcription or an increase in half-life. The half-life of the .beta.ig-h3 transcripts was determined in untreated and TGF-.beta.1 treated A549 cells. The results shown in FIG. 4, illustrate that the half-life for .beta.ig-h3 RNA in untreated cells was about 5 hours, and is only slightly increased to 7 hours in TGF-.beta.1 treated, transcriptionally inhibited (actinomycin D-treated) cells. The major increase in .beta.ig-h3 RNA thus appears to be due to an increase in transcription, rather than an increase in half-life. As shown in FIG. 2, the kinetics of .beta.ig-h3 message accumulation implies a half-life of 7-11 hours, which is the same range observed in the actinomycin D studies. This suggests that message stability is not grossly altered by actinomycin D in these studies.
Several human normal and cancer cell lines were examined for induction of .beta.ig-h3. TGF-.beta.1 treatment of HEPM (human embryonic palatal mesenchymal) cells, H2981 cells resulted in an increase in .beta.ig-h3 mRNA. .beta.ig-h3 message was not induced by TGF-.beta.1 in 293 cells nor in the breast cancer cell lines MCF-7, MDA453 or MDA468. The fact that .beta.ig-h3 is not induced in all cell types is not a unique finding, as the induction of other genes by TGF-.beta. have been known to vary in different cell lines. For example, c-myc is reported to be stimulated in AKR-2B fibroblasts (Leof et at. (1986) Proc. Natl. Acad. Sci. USA 83:1453-1458), but down regulated in keratonicytes (Coffey et at. (1988) Cancer Res. 48:1596-1602).
EXAMPLE 2
Sequence Analysis
DNA sequence analysis was performed by the method of Sanger et at. (1977) Proc. Natl. Acad. Sci. USA 74:5463-54679.
Nucleotide sequence analysis of p.beta.ig-h3a revealed that it contained a partial open reading frame. The cDNA library was therefore rescreened with [.sup.32 -P]-labeled .beta.ig-h3a probe until several overlapping clones encoding the entire open reading frame were obtained. The nucleotide and deduced amino acid sequence of .beta.IG-H3 is shown in FIG. 5 and is described in Sequence I.D. Number 1 and 2. The cDNA contains a single open reading frame encoding a 683 amino acid protein, .beta.IG-H3. .beta.IG-H3 contains an amino terminal signal peptide and an RGD sequence located at the carboxy terminus (residues 642-644). This motif has previously been shown to serve as a ligand recognition sequence for several integrins (Ruoslahti, E. (1989) J. Biol Chem. 264:13369-13371). There are no predicted sites of N-linked glycosylation. A polyadenylation signal is present at nucleotide residue 2624.
A Tfasta search of the Genebank and EMBL databases with the .beta.ig-h3 open reading frame indicated that the protein was unique. Short regions with homology to grasshopper and drosophila fasciclin-I and Mpb70 from Mycobacterium bovus were identified. FIG. 6/A shows multiple alignments of regions from these proteins.
Upon dot matrix analysis of .beta.IG-H3 four homologous domains of approximately 140 amino acids were revealed. A comparison of these repeats is shown in FIG. 6B and illustrate interdomain homologies ranging from 31% (between domains 2 and 4) to 16% (between domains 1 and 3), with domain 3 the most divergent. These interdomain homologies are similar to those found in fasciclin-I, wherein repeat 2 appears to be the most divergent. The domains of .beta.IG-H3 and fasciclin-I share 3 highly conserved amino acid stretches. One stretch contains 9 of 10 amino acids conserved at the amino end (T X F A P S N E A W). A second stretch has 6 of 8 amino acids conserved about 30 residues from the amino end (R X I L N X H I); and a third region near the carboxy end has 12 of 16 amino acids conserved (A T N G V V H X I D X V L X X P) . These comparisons are illustrated in FIG. 6A.
Mpb70 in the major secreted protein from Mycobacterium bovus, the causal agent of bovine tuberculosis. Mpb70 occurs as a dimer of a 163 amino acid monomer with 33% homology to the .beta.IG-H3 domains in the carboxy terminal 97 amino acids. The amino terminal 66 amino acids carry mycobacterium specific epitopes (Redford et al. (1990) J. of Gem Microbiol. 136:265-272).
EXAMPLE 3
Growth Inhibition of Cells By .beta.IGH3
In order to study the ability of .beta.IG-H3 to inhibit cell growth, transfection studies were carried out.
A549 tumors cells (American Type Culture Collection CCL 185) were transfected with the neomycin resistance gene (pNEO) under the control of the herpes simplex virus (HSV) promoter. The control cells were A549 cells transfected with pNEO and calf thymus DNA. The effect of .beta.IG-H3 was studied by transfecting A549 cells with pNEO and .beta.ig-h3 under the control of either the metallothromine promoter (A549+pNEO+MT/H3) or the cytomegalovirus promoter (A549+pNEO+.pi.H3M/H3).
Approximately 5.times.10.sup.5 cells were plated in 100 mm dishes in Dulbecco's Modified Eagle's Medium (DMEM, Gibco) supplemented with 10% fetal bovine serum (FBS) and maintained for 12 to 16 hours. The cells were then transfected using the DOTAP transfection reagent from Boehringer Mannheim. After approximately 24 hours cells were removed with trypsin in a total volume of 10 mi. Half of the harvested cells were then plated onto 100 ml dishes in DMEM+10% FBS containing 1 mg/ml of the antibiotic G-418 (Sigma) and maintained at 37.degree. C. Approximately two to three weeks later the dishes were stained with crystal violet to indicate cell colonies that had formed and photographed. The results are shown in FIG. 7 which illustrates that cotransfection of cells with .beta.IG-H3 encoding DNA resulted in a dramatic decrease in colony formation. This indicates that .beta.IG-H3 may be a growth inhibitor induced by TGF-.beta..
Recombinant chinese hamster ovary cells (CHO) which secrete high levels of .beta.IG-H3 were prepared and studied. Upon growth in culture, CHO cells secreting .beta.IG-H3 appear bigger, flatter and grow more slowly than non-.beta.IG-H3 secreting CHO cells. This suggests that the .beta.IG-H3 protein may be inhibiting proliferation of these cells.
The foregoing description and Examples are intended as illustrative of the present invention, but not as limiting. Numerous variations and modifications may be effected without departing from the true spirit and scope of the present invention.
__________________________________________________________________________SEQUENCE LISTING(1) GENERAL INFORMATION:(iii) NUMBER OF SEQUENCES: 2(2) INFORMATION FOR SEQ ID NO:1:(i) SEQUENCE CHARACTERISTICS:(A) LENGTH: 2691 base pairs(B) TYPE: nucleic acid(C) STRANDEDNESS: double(D) TOPOLOGY: linear(ii) MOLECULE TYPE: cDNA(iii) HYPOTHETICAL: NO(vi) ORIGINAL SOURCE: (A) ORGANISM: Homo sapiens(F) TISSUE TYPE: LUNG(G) CELL TYPE: ADENOCARCINOMA(H) CELL LINE: A549(xi) SEQUENCE DESCRIPTION: SEQ ID NO:1:GCTTGCCCGTCGGTCGCTAGCTCGCTCGGTGCGCGTCGTCCCGCTCCATGGCGCTCTTCG60TGCGGCTGCTGGCTCTCGCCCTGGCTCTGGCC CTGGGCCCCGCCGCGACCCTGGCGGGTC120CCGCCAAGTCGCCCTACCAGCTGGTGCTGCAGCACAGCAGGCTCCGGGGCCGCCAGCACG180GCCCCAACGTGTGTGCTGTGCAGAAGGTTATTGGCACTAATAGGAAGTACTTCACCAACT240GCAAGCAGTG GTACCAAAGGAAAATCTGTGGCAAATCAACAGTCATCAGCTACGAGTGCT300GTCCTGGATATGAAAAGGTCCCTGGGGAGAAGGGCTGTCCAGCAGCCCTACCACTCTCAA360ACCTTTACGAGACCCTGGGAGTCGTTGGATCCACCACCACTCAGCTGTACACGGA CCGCA420CGGAGAAGCTGAGGCCTGAGATGGAGGGGCCCGGCAGCTTCACCATCTTCGCCCCTAGCA480ACGAGGCCTGGGCCTCCTTGCCAGCTGAAGTGCTGGACTCCCTGGTCAGCAATGTCAACA540TTGAGCTGCTCAATGCCCTCCGCTACCATATG GTGGGCAGGCGAGTCCTGACTGATGAGC600TGAAACACGGCATGACCCTCACCTCTATGTACCAGAATTCCAACATCCAGATCCACCACT660ATCCTAATGGGATTGTAACTGTGAACTGTGCCCGGCTCCTGAAAGCCGACCACCATGCAA720CCAACGGGGT GGTGCACCTCATCGATAAGGTCATCTCCACCATCACCAACAACATCCAGC780AGATCATTGAGATCGAGGACACCTTTGAGACCCTTCGGGCTGCTGTGGCTGCATCAGGGC840TCAACACGATGCTTGAAGGTAACGGCCAGTACACGCTTTTGGCCCCGACCAATGA GGCCT900TCGAGAAGATCCCTAGTGAGACTTTGAACCGTATCCTGGGCGACCCAGAAGCCCTGAGAG960ACCTGCTGAACAACCACATCTTGAAGTCAGCTATGTGTGCTGAAGCCATCGTTGCGGGGC1020TGTCTGTAGAGACCCTGGAGGGCACGACACTG GAGGTGGGCTGCAGCGGGGACATGCTCA1080CTATCAACGGGAAGGCGATCATCTCCAATAAAGACATCCTAGCCACCAACGGGGTGATCC1140ACTACATTGATGAGCTACTCATCCCAGACTCAGCCAAGACACTATTTGAATTGGCTGCAG1200AGTCTGATGT GTCCACAGCCATTGACCTTTTCAGACAAGCCGGCCTCGGCAATCATCTCT1260CTGGAAGTGAGCGGTTGACCCTCCTGGCTCCCCTGAATTCTGTATTCAAAGATGGAACCC1320CTCCAATTGATGCCCATACAAGGAATTTGCTTCGGAACCACATAATTAAAGACCA GCTGG1380CCTCTAAGTATCTGTACCATGGACAGACCCTGGAAACTCTGGGCGGCAAAAAACTGAGAG1440TTTTTGTTTATCGTAATAGCCTCTGCATTGAGAACAGCTGCATCGCGGCCCACGACAAGA1500GGGGGAGGTACGGGACCCTGTTCACGATGGAC CGGGTGCTGACCCCCCCAATGGGGACTG1560TCATGGATGTCCTGAAGGGAGACAATCGCTTTAGCATGCTGGTAGCTGCCATCCAGTCTG1620CAGGACTGACGGAGACCCTCAACCGGGAAGGAGTCTACACAGTCTTTGCTCCCACAAATG1680AAGCCTTCCG AGCCCTGCCACCAAGAGAACGGAGCAGACTCTTGGGAGATGCCAAGGAAC1740TTGCCAACATCCTGAAATACCACATTGGTGATGAAATCCTGGTTAGCGGAGGCATCGGGG1800CCCTGGTGCGGCTAAAGTCTCTCCAAGGTGACAAGCTGGAAGTCAGCTTGAAAAA CAATG1860TGGTGAGTGTCAACAAGGAGCCTGTTGCCGAGCCTGACATCATGGCCACAAATGGCGTGG1920TCCATGTCATCACCAATGTTCTGCAGCCTCCAGCCAACAGACCTCAGGAAAGAGGGGATG1980AACTTGCAGACTCTGCGCTTGAGATCTTCAAA CAAGCATCAGCGTTTTCCAGGGCTTCCC2040AGAGGTCTGTGCGACTAGCCCCTGTCTATCAAAAGTTATTAGAGAGGATGAAGCATTAGC2100TTGAAGCACTACAGGAGGAATGCACCACGGCAGCTCTCCGCCAATTTCTCTCAGATTTCC2160ACAGAGACTG TTTGAATGTTTTCAAAACCAAGTATCACACTTTAATGTACATGGGCCGCA2220CCATAATGAGATGTGAGCCTTGTGCATGTGGGGGAGGAGGGAGAGAGATGTACTTTTTAA2280ATCATGTTCCCCCTAAACATGGCTGTTAACCCACTGCATGCAGAAACTTGGATGT CACTG2340CCTGACATTCACTTCCAGAGAGGACCTATCCCAAATGTGGAATTGACTGCCTATGCCAAG2400TCCCTGGAAAAGGAGCTTCAGTATTGTGGGGCTCATAAAACATGAATCAAGCAATCCAGC2460CTCATGGGAAGTCCTGGCACAGTTTTTGTAAA GCCCTTGCACAGCTGGAGAAATGGCATC2520ATTATAAGCTATGAGTTGAAATGTTCTGTCAAATGTGTCTCACATCTACACGTGGCTTGG2580AGGCTTTTATGGGGCCCTGTCCAGGTAGAAAAGAAATGGTATGTAGAGCTTAGATTTCCC2640TATTGTGACA GAGCCATGGTGTGTTTGTAATAATAAAACCAAAGAAACATA2691(2) INFORMATION FOR SEQ ID NO:2:(i) SEQUENCE CHARACTERISTICS:(A) LENGTH: 683 amino acids(B) TYPE: amino acid(D) TOPOLOGY: linear(ii) MOLECULE TYPE: protein(iii) HYPOTHETICAL: YES(v) FRAGMENT TYPE: internal(vi) ORIGINAL SOURCE: (A) ORGANISM: Homo sapiens(F) TISSUE TYPE: LUNG(G) CELL TYPE: ADENOCARCINOMA(H) CELL LINE: A549(xi) SEQUENCE DESCRIPTION: SEQ ID NO:2:MetAlaLeuPheValArgLeuLeuAlaLeuAlaLeuAlaLeuAlaLeu1510 15GlyProAlaAlaThrLeuAlaGlyProAlaLysSerProTyrGlnLeu202530ValLeuGlnHisSerArgLeuArgGlyArgG lnHisGlyProAsnVal354045CysAlaValGlnLysValIleGlyThrAsnArgLysTyrPheThrAsn5055 60CysLysGlnTrpTyrGlnArgLysIleCysGlyLysSerThrValIle65707580SerTyrGluCysCysProGlyTyrGluLysValProG lyGluLysGly859095CysProAlaAlaLeuProLeuSerAsnLeuTyrGluThrLeuGlyVal100105 110ValGlySerThrThrThrGlnLeuTyrThrAspArgThrGluLysLeu115120125ArgProGluMetGluGlyProGlySerPheThrIlePhe AlaProSer130135140AsnGluAlaTrpAlaSerLeuProAlaGluValLeuAspSerLeuVal145150155 160SerAsnValAsnIleGluLeuLeuAsnAlaLeuArgTyrHisMetVal165170175GlyArgArgValLeuThrAspGluLeuLysHisGly MetThrLeuThr180185190SerMetTyrGlnAsnSerAsnIleGlnIleHisHisTyrProAsnGly195200 205IleValThrValAsnCysAlaArgLeuLeuLysAlaAspHisHisAla210215220ThrAsnGlyValValHisLeuIleAspLysValIleSerThrIleT hr225230235240AsnAsnIleGlnGlnIleIleGluIleGluAspThrPheGluThrLeu245250 255ArgAlaAlaValAlaAlaSerGlyLeuAsnThrMetLeuGluGlyAsn260265270GlyGlnTyrThrLeuLeuAlaProThrAsnGluAlaPh eGluLysIle275280285ProSerGluThrLeuAsnArgIleLeuGlyAspProGluAlaLeuArg290295300 AspLeuLeuAsnAsnHisIleLeuLysSerAlaMetCysAlaGluAla305310315320IleValAlaGlyLeuSerValGluThrLeuGluGlyThrThr LeuGlu325330335ValGlyCysSerGlyAspMetLeuThrIleAsnGlyLysAlaIleIle340345 350SerAsnLysAspIleLeuAlaThrAsnGlyValIleHisTyrIleAsp355360365GluLeuLeuIleProAspSerAlaLysThrLeuPheGluLeu AlaAla370375380GluSerAspValSerThrAlaIleAspLeuPheArgGlnAlaGlyLeu3853903954 00GlyAsnHisLeuSerGlySerGluArgLeuThrLeuLeuAlaProLeu405410415AsnSerValPheLysAspGlyThrProProIleAspAlaH isThrArg420425430AsnLeuLeuArgAsnHisIleIleLysAspGlnLeuAlaSerLysTyr43544044 5LeuTyrHisGlyGlnThrLeuGluThrLeuGlyGlyLysLysLeuArg450455460ValPheValTyrArgAsnSerLeuCysIleGluAsnSerCysIleAla 465470475480AlaHisAspLysArgGlyArgTyrGlyThrLeuPheThrMetAspArg485490 495ValLeuThrProProMetGlyThrValMetAspValLeuLysGlyAsp500505510AsnArgPheSerMetLeuValAlaAlaIleGlnSerAlaGly LeuThr515520525GluThrLeuAsnArgGluGlyValTyrThrValPheAlaProThrAsn530535540G luAlaPheArgAlaLeuProProArgGluArgSerArgLeuLeuGly545550555560AspAlaLysGluLeuAlaAsnIleLeuLysTyrHisIleGlyAsp Glu565570575IleLeuValSerGlyGlyIleGlyAlaLeuValArgLeuLysSerLeu5805855 90GlnGlyAspLysLeuGluValSerLeuLysAsnAsnValValSerVal595600605AsnLysGluProValAlaGluProAspIleMetAlaThrAsnGlyV al610615620ValHisValIleThrAsnValLeuGlnProProAlaAsnArgProGln625630635640 GluArgGlyAspGluLeuAlaAspSerAlaLeuGluIlePheLysGln645650655AlaSerAlaPheSerArgAlaSerGlnArgSerValArgLeuAl aPro660665670ValTyrGlnLysLeuLeuGluArgMetLysHis675680

TGF-.beta. induced gene

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