The Development of a Prokaryotic Annotation Engine

Information

  • NSF Award
  • 0110270
Owner
  • Award Id
    0110270
  • Award Effective Date
    8/1/2001 - 23 years ago
  • Award Expiration Date
    7/31/2004 - 20 years ago
  • Award Amount
    $ 904,137.00
  • Award Instrument
    Continuing grant

The Development of a Prokaryotic Annotation Engine

The Institute for Genomic Research, TIGR, has developed tools for annotation and a complex web display for<br/>presenting this information to the scientific community. The annotation system includes software that allows its annotation staff to initate a bacterial annotation project, update that data with manual curation, and<br/>to electronically publish that data on TIGR's web site and at GenBank. TIGR web display includes a database system with the capability of representing all completed microbial genomes, graphical displays, and<br/>the ability to allow users to perform complex ad hoc queries on that data.<br/><br/>The above tools were designed strictly for the purpose of running those<br/>software locally at TIGR or on TIGR web servers. The current project will provide resources for the development of software that will be used by scientists to run those software locally on their own machines. This will allow users easy access to annotation systems that are consistent with the well-developed set of standard operational procedures developed at TIGR and will help ensure consistency of annotation across many<br/>sequencing centers. By placing the software developed at TIGR in the hands of users, they will also be able to modify and improve upon the representation system, and use the graphical display to promote<br/>individual analysis of bacterial genome information.

  • Program Officer
    Manfred D. Zorn
  • Min Amd Letter Date
    9/13/2001 - 23 years ago
  • Max Amd Letter Date
    6/4/2003 - 21 years ago
  • ARRA Amount

Institutions

  • Name
    Institute for Genomic Research
  • City
    Rockville
  • State
    MD
  • Country
    United States
  • Address
    9712 Medical Center Drive
  • Postal Code
    208500334
  • Phone Number
    3017957591

Investigators

  • First Name
    Steven
  • Last Name
    Salzberg
  • Email Address
    salzberg@jhu.edu
  • Start Date
    9/13/2001 12:00:00 AM
  • First Name
    Owen
  • Last Name
    White
  • Email Address
    owhite@som.umaryland.edu
  • Start Date
    9/13/2001 12:00:00 AM

Program Element

  • Text
    ADVANCES IN BIO INFORMATICS
  • Code
    1165

Program Reference

  • Text
    BIOTECHNOLOGY - INFRASTRUCTURE
  • Code
    9184
  • Text
    RES EXPER FOR UNDERGRAD-SUPPLT
  • Code
    9251
  • Text
    BIOTECHNOLOGY