Patent Application
20220081423
The present invention relates to organic compounds useful for therapy in a mammal, and in particular to inhibitors of sodium channel (e.g., NaV1.7) that are useful for treating sodium channel-mediated diseases or conditions, such as pain, as well as other diseases and conditions associated with the modulation of sodium channels.
Voltage-gated sodium channels are transmembrane proteins that initiate action potentials in nerve, muscle and other electrically excitable cells, and are a necessary component of normal sensation, emotions, thoughts and movements (Catterall, W. A., Nature (2001), Vol. 409, pp. 988-990). These channels consist of a highly processed alpha subunit that is associated with auxiliary beta subunits. The pore-forming alpha subunit is sufficient for channel function, but the kinetics and voltage dependence of channel gating are in part modified by the beta subunits (Goldin et al., Neuron (2000), Vol. 28, pp. 365-368). Electrophysiological recording, biochemical purification, and molecular cloning have identified ten different sodium channel alpha subunits and four beta subunits (Yu, F. H., et al., Sci. STKE (2004), 253; and Yu, F. H., et al., Neurosci. (2003), 20:7577-85).
The sodium channel family of proteins has been extensively studied and shown to be involved in a number of vital body functions. Research in this area has identified variants of the alpha subunits that result in major changes in channel function and activities, which can ultimately lead to major pathophysiological conditions. The members of this family of proteins are denoted NaV1.1 to NaV1.9.
NaV1.7 is a tetrodotoxin-sensitive voltage-gated sodium channel encoded by the gene SCN9A. Human NaV1.7 was first cloned from neuroendocrine cells (Klugbauer, N., et al., 1995 EMBO J., 14 (6): 1084-90.) and rat NaV1.7 was cloned from a pheochromocytoma PC12 cell line (Toledo-Aral, J. J., et al., Proc. Natl. Acad. Sci. USA (1997), 94:1527-1532) and from rat dorsal root ganglia (Sangameswaran, L., et al., (1997), J. Biol. Chem., 272 (23): 14805-9). NaV1.7 is expressed primarily in the peripheral nervous system, especially nocieptors and olfactory neurons and sympathetic neurons. The inhibition, or blocking, of NaV1.7 has been shown to result in analgesic activity. Knockout of NaV1.7 expression in a subset of sensory neurons that are predominantly nociceptive results in resistance to inflammatory pain (Nassar, et al., op. cit.). Likewise, loss of function mutations in humans results in congenital indifference to pain (CIP), in which the individuals are resistant to both inflammatory and neuropathic pain (Cox, J. J., et al., Nature (2006); 444:894-898; Goldberg, Y. P., et al., Clin. Genet. (2007); 71:311-319). Conversely, gain of function mutations in NaV1.7 have been established in two human heritable pain conditions, primary erythromelalgia and familial rectal pain, (Yang, Y., et al., J. Med. Genet. (2004), 41(3):171-4). In addition, a single nucleotide polymorphism (R1150W) that has very subtle effects on the time- and voltage-dependence of channel gating has large effects on pain perception (Estacion, M., et al., 2009. Ann Neurol 66: 862-6; Reimann, F., et al., Proc Natl Acad Sci USA (2010), 107: 5148-53). About 10% of the patients with a variety of pain conditions have the allele conferring greater sensitivity to pain and thus might be more likely to respond to block of NaV1.7. Because NaV1.7 is expressed in both sensory and sympathetic neurons, one might expect that enhanced pain perception would be accompanied by cardiovascular abnormalities such as hypertension, but no correlation has been reported. Thus, both the CIP mutations and SNP analysis suggest that human pain responses are more sensitive to changes in NaV1.7 currents than are perturbations of autonomic function.
Sodium channel blockers have been shown to be useful in the treatment of pain, (see, e.g., Wood, J. N., et al., J. Neurobiol. (2004), 61(1), 55-71. Genetic and functional studies have provided evidence to support that activity of NaV1.7 as a major contributor to pain signalling in mammals. (See Haj j, et al. Nature Reviews Neuroscience; 2013, vol 14, 49-62; and Lee, et al. Cell; 2014, vol 157; 1-12). Presently, there are a limited number of effective sodium channel blockers for the treatment of pain with a minimum of adverse side effects which are currently in the clinic. Thus there remains a need for selective voltage-gated sodium channel modulators (e.g., modulators of NaV1.7) that can provide a greater therapeutic index for treatment.
In one aspect the present invention provides novel compounds having sodium channel blocking activity that are useful for the treatment of pain.
In a first embodiment (Embodiment 1; abbreviated as “E1”) the invention provides a compound of the invention, which is a compound selected from the group consisting of:
or a pharmaceutically acceptable salt thereof.
In another aspect the present invention provides for a pharmaceutical composition comprising a compound as described herein or a pharmaceutically acceptable salt thereof, and a pharmaceutically acceptable excipient.
In another aspect the present invention provides for a method of treating a disease or condition in a mammal selected from the group consisting of pain, depression, cardiovascular diseases, respiratory diseases, and psychiatric diseases, and combinations thereof, wherein the method comprises administering to the mammal in need thereof a therapeutically effective amount of a compound as described herein, or a pharmaceutically acceptable salt thereof. In another aspect of the present invention said disease or condition is selected from the group consisting of neuropathic pain, inflammatory pain, visceral pain, cancer pain, chemotherapy pain, trauma pain, surgical pain, post-surgical pain, childbirth pain, labor pain, neurogenic bladder, ulcerative colitis, chronic pain, persistent pain, peripherally mediated pain, centrally mediated pain, chronic headache, migraine headache, sinus headache, tension headache, phantom limb pain, dental pain, peripheral nerve injury or a combination thereof. In another aspect of the present invention said disease or condition is selected from the group consisting of pain associated with HIV, HIV treatment induced neuropathy, trigeminal neuralgia, post-herpetic neuralgia, eudynia, heat sensitivity, tosarcoidosis, irritable bowel syndrome, Crohns disease, pain associated with multiple sclerosis (MS), amyotrophic lateral sclerosis (ALS), diabetic neuropathy, peripheral neuropathy, arthritis, rheumatoid arthritis, osteoarthritis, atherosclerosis, paroxysmal dystonia, myasthenia syndromes, myotonia, malignant hyperthermia, cystic fibrosis, pseudoaldosteronism, rhabdomyolysis, hypothyroidism, bipolar depression, anxiety, schizophrenia, sodium channel toxin related illnesses, familial erythromelalgia, primary erythromelalgia, familial rectal pain, cancer, epilepsy, partial and general tonic seizures, restless leg syndrome, arrhythmias, fibromyalgia, neuroprotection under ischaemic conditions cause by stroke or neural trauma, tach-arrhythmias, atrial fibrillation and ventricular fibrillation.
In another aspect the present invention provides for a method of treating pain in a mammal by the inhibition of ion flux through a voltage-dependent sodium channel in the mammal, wherein the method comprises administering to the mammal in need thereof a therapeutically effective amount of a compound as described herein, or a pharmaceutically acceptable salt thereof.
In another aspect the present invention provides for a method of decreasing ion flux through a voltage-dependent sodium channel in a cell in a mammal, wherein the method comprises contacting the cell with a compound as described herein, or a pharmaceutically acceptable salt thereof.
In another aspect the present invention provides for a method of treating pruritus in a mammal, wherein the method comprises administering to the mammal in need thereof a therapeutically effective amount of a compound of the invention, or a pharmaceutically acceptable salt thereof.
In another aspect the present invention provides for a method of treating cancer in a mammal, wherein the method comprises administering to the mammal in need thereof a therapeutically effective amount a compound as described herein, or a pharmaceutically acceptable salt thereof.
In another aspect the present invention provides for a method of treating, but not preventing, pain in a mammal, wherein the method comprises administering to the mammal in need thereof a therapeutically effective amount of a compound as described herein, or a pharmaceutically acceptable salt thereof. In another aspect of the present invention the pain is selected from the group consisting of neuropathic pain, inflammatory pain, visceral pain, cancer pain, chemotherapy pain, trauma pain, surgical pain, post-surgical pain, childbirth pain, labor pain, neurogenic bladder, ulcerative colitis, chronic pain, persistent pain, peripherally mediated pain, centrally mediated pain, chronic headache, migraine headache, sinus headache, tension headache, phantom limb pain, dental pain, peripheral nerve injury or a combination thereof. In another aspect the present invention the pain is associated with a disease or condition selected from the group consisting of HIV, HIV treatment induced neuropathy, trigeminal neuralgia, post-herpetic neuralgia, eudynia, heat sensitivity, tosarcoidosis, irritable bowel syndrome, Crohns disease, pain associated with multiple sclerosis (MS), amyotrophic lateral sclerosis (ALS), diabetic neuropathy, peripheral neuropathy, arthritis, rheumatoid arthritis, osteoarthritis, atherosclerosis, paroxysmal dystonia, myasthenia syndromes, myotonia, malignant hyperthermia, cystic fibrosis, pseudoaldosteronism, rhabdomyolysis, hypothyroidism, bipolar depression, anxiety, schizophrenia, sodium channel toxin related illnesses, familial erythromelalgia, primary erythromelalgia, familial rectal pain, cancer, epilepsy, partial and general tonic seizures, restless leg syndrome, arrhythmias, fibromyalgia, neuroprotection under ischaemic conditions cause by stroke or neural trauma, tach-arrhythmias, atrial fibrillation and ventricular fibrillation.
In another aspect the present invention provides for a method for the treatment or prophylaxis of pain, depression, cardiovascular disease, respiratory disease, or psychiatric disease, or a combinations thereof, in an animal which method comprises administering an effective amount of a compound of as described herein, or a pharmaceutically acceptable salt thereof.
In another aspect the present invention provides for a compound as described herein, or a pharmaceutically acceptable salt thereof for the use as a medicament for the treatment of diseases and disorders selected from the group consisting of pain, depression, cardiovascular diseases, respiratory diseases, and psychiatric diseases, or a combination thereof.
In another aspect the present invention provides for the use of a compound as described herein, or a pharmaceutically acceptable salt thereof for the manufacture of a medicament for the treatment of diseases and disorders selected from the group consisting of pain, depression, cardiovascular diseases, respiratory diseases, and psychiatric diseases, or a combination thereof.
In another aspect the present invention provides for the invention as described herein.
As used herein, the term “chiral” refers to molecules which have the property of non-superimposability of the mirror image partner, while the term “achiral” refers to molecules which are superimposable on their mirror image partner.
As used herein, the term “stereoisomers” refers to compounds which have identical chemical constitution, but differ with regard to the arrangement of the atoms or groups in space.
As used herein a wavy line “” that intersects a bond in a chemical structure indicates the point of attachment of the bond that the wavy bond intersects in the chemical structure to the remainder of a molecule.
“Diastereomer” refers to a stereoisomer with two or more centers of chirality and whose molecules are not mirror images of one another. Diastereomers have different physical properties, e.g. melting points, boiling points, spectral properties, and reactivities. Mixtures of diastereomers can separate under high resolution analytical procedures such as electrophoresis and chromatography.
“Enantiomers” refer to two stereoisomers of a compound which are non-superimposable mirror images of one another.
Stereochemical definitions and conventions used herein generally follow S. P. Parker, Ed., McGraw-Hill Dictionary of Chemical Terms (1984) McGraw-Hill Book Company, New York; and Eliel, E. and Wilen, S., “Stereochemistry of Organic Compounds”, John Wiley & Sons, Inc., New York, 1994. The compounds of the invention can contain asymmetric or chiral centers, and therefore exist in different stereoisomeric forms. It is intended that all stereoisomeric forms of the compounds of the invention, including but not limited to, diastereomers, enantiomers and atropisomers, as well as mixtures thereof such as racemic mixtures, form part of the present invention. Many organic compounds exist in optically active forms, i.e., they have the ability to rotate the plane of plane-polarized light. In describing an optically active compound, the prefixes D and L, or R and S, are used to denote the absolute configuration of the molecule about its chiral center(s). The prefixes d and 1 or (+) and (−) are employed to designate the sign of rotation of plane-polarized light by the compound, with (−) or 1 meaning that the compound is levorotatory. A compound prefixed with (+) or d is dextrorotatory. For a given chemical structure, these stereoisomers are identical except that they are mirror images of one another. A specific stereoisomer can also be referred to as an enantiomer, and a mixture of such isomers is often called an enantiomeric mixture. A 50:50 mixture of enantiomers is referred to as a racemic mixture or a racemate, which can occur where there has been no stereoselection or stereospecificity in a chemical reaction or process. The terms “racemic mixture” and “racemate” refer to an equimolar mixture of two enantiomeric species, devoid of optical activity.
When a bond in a compound formula herein is drawn in a non-stereochemical manner (e.g. flat), the atom to which the bond is attached includes all stereochemical possibilities. When a bond in a compound formula herein is drawn in a defined stereochemical manner (e.g. bold, bold-wedge, dashed or dashed-wedge), it is to be understood that the atom to which the stereochemical bond is attached is enriched in the absolute stereoisomer depicted unless otherwise noted. In one embodiment, the compound may be at least 51% the absolute stereoisomer depicted. In another embodiment, the compound may be at least 80% the absolute stereoisomer depicted. In another embodiment, the compound may be at least 90% the absolute stereoisomer depicted. In another embodiment, the compound may be at least 95% the absolute stereoisomer depicted. In another embodiment, the compound may be at least 97% the absolute stereoisomer depicted. In another embodiment, the compound may be at least 98% the absolute stereoisomer depicted. In another embodiment, the compound may be at least 99% the absolute stereoisomer depicted.
As used herein, the term “tautomer” or “tautomeric form” refers to structural isomers of different energies which are interconvertible via a low energy barrier. For example, proton tautomers (also known as prototropic tautomers) include interconversions via migration of a proton, such as keto-enol and imine-enamine isomerizations. Valence tautomers include interconversions by reorganization of some of the bonding electrons.
As used herein, the term “solvate” refers to an association or complex of one or more solvent molecules and a compound of the invention. Examples of solvents that form solvates include, but are not limited to, water, isopropanol, ethanol, methanol, DMSO, ethyl acetate, acetic acid, and ethanolamine. The term “hydrate” refers to the complex where the solvent molecule is water.
As used herein, the term “protecting group” refers to a substituent that is commonly employed to block or protect a particular functional group on a compound. For example, an “amino-protecting group” is a substituent attached to an amino group that blocks or protects the amino functionality in the compound. Suitable amino-protecting groups include acetyl, trifluoroacetyl, t-butoxycarbonyl (BOC), benzyloxycarbonyl (CBZ) and 9-fluorenylmethylenoxycarbonyl (Fmoc). Similarly, a “hydroxy-protecting group” refers to a substituent of a hydroxy group that blocks or protects the hydroxy functionality. Suitable protecting groups include acetyl and silyl. A “carboxy-protecting group” refers to a substituent of the carboxy group that blocks or protects the carboxy functionality. Common carboxy-protecting groups include phenylsulfonylethyl, cyanoethyl, 2-(trimethylsilyl)ethyl, 2-(trimethylsilyl)ethoxymethyl, 2-(p-toluenesulfonyl)ethyl, 2-(p-nitrophenylsulfenyl)ethyl, 2-(diphenylphosphino)-ethyl, nitroethyl and the like. For a general description of protecting groups and their use, see P.G.M. Wuts and T.W. Greene, Greene's Protective Groups in Organic Synthesis 4th edition, Wiley-Interscience, New York, 2006.
As used herein, the term “mammal” includes, but is not limited to, humans, mice, rats, guinea pigs, monkeys, dogs, cats, horses, cows, pigs, and sheep.
As used herein, the term “pharmaceutically acceptable salts” is meant to include salts of the active compounds which are prepared with relatively nontoxic acids or bases, depending on the particular substituents found on the compounds described herein. When compounds of the present invention contain relatively acidic functionalities, base addition salts can be obtained by contacting the neutral form of such compounds with a sufficient amount of the desired base, either neat or in a suitable inert solvent. Examples of salts derived from pharmaceutically-acceptable inorganic bases include aluminum, ammonium, calcium, copper, ferric, ferrous, lithium, magnesium, manganic, manganous, potassium, sodium, zinc and the like. Salts derived from pharmaceutically-acceptable organic bases include salts of primary, secondary and tertiary amines, including substituted amines, cyclic amines, naturally-occurring amines and the like, such as arginine, betaine, caffeine, choline, N,N′-dibenzylethylenediamine, diethylamine, 2-diethylaminoethanol, 2-dimethylaminoethanol, ethanolamine, ethylenediamine, N-ethylmorpholine, N-ethylpiperidine, glucamine, glucosamine, histidine, hydrabamine, isopropylamine, lysine, methylglucamine, morpholine, piperazine, piperidine, polyamine resins, procaine, purines, theobromine, triethylamine, trimethylamine, tripropylamine, tromethamine and the like. When compounds of the present invention contain relatively basic functionalities, acid addition salts can be obtained by contacting the neutral form of such compounds with a sufficient amount of the desired acid, either neat or in a suitable inert solvent. Examples of pharmaceutically acceptable acid addition salts include those derived from inorganic acids like hydrochloric, hydrobromic, nitric, carbonic, monohydrogencarbonic, phosphoric, monohydrogenphosphoric, dihydrogenphosphoric, sulfuric, monohydrogensulfuric, hydriodic, or phosphorous acids and the like, as well as the salts derived from relatively nontoxic organic acids like acetic, propionic, isobutyric, malonic, benzoic, succinic, suberic, fumaric, mandelic, phthalic, benzenesulfonic, p-tolylsulfonic, citric, tartaric, methanesulfonic, and the like. Also included are salts of amino acids such as arginate and the like, and salts of organic acids like glucuronic or galactunoric acids and the like (see, for example, Berge, S. M., et al., “Pharmaceutical Salts”, Journal of Pharmaceutical Science, 1977, 66, 1-19). Certain specific compounds of the present invention contain both basic and acidic functionalities that allow the compounds to be converted into either base or acid addition salts.
The neutral forms of the compounds can be regenerated by contacting the salt with a base or acid and isolating the parent compound in the conventional manner. The parent form of the compound differs from the various salt forms in certain physical properties, such as solubility in polar solvents, but otherwise the salts are equivalent to the parent form of the compound for the purposes of the present invention.
In addition to salt forms, the present invention provides compounds which are in a prodrug form. As used herein the term “prodrug” refers to those compounds that readily undergo chemical changes under physiological conditions to provide the compounds of the present invention. Additionally, prodrugs can be converted to the compounds of the present invention by chemical or biochemical methods in an ex vivo environment. For example, prodrugs can be slowly converted to the compounds of the present invention when placed in a transdermal patch reservoir with a suitable enzyme or chemical reagent.
Prodrugs of the invention include compounds wherein an amino acid residue, or a polypeptide chain of two or more (e.g., two, three or four) amino acid residues, is covalently joined through an amide or ester bond to a free amino, hydroxy or carboxylic acid group of a compound of the present invention. The amino acid residues include but are not limited to the 20 naturally occurring amino acids commonly designated by three letter symbols and also includes phosphoserine, phosphothreonine, phosphotyrosine, 4-hydroxyproline, hydroxylysine, demosine, isodemosine, gamma-carboxyglutamate, hippuric acid, octahydroindole-2-carboxylic acid, statine, 1,2,3,4-tetrahydroisoquinoline-3-carboxylic acid, penicillamine, ornithine, 3-methylhistidine, norvaline, beta-alanine, gamma-aminobutyric acid, citrulline, homocysteine, homoserine, methyl-alanine, para-benzoylphenylalanine, phenylglycine, propargylglycine, sarcosine, methionine sulfone and tert-butylglycine.
Additional types of prodrugs are also encompassed. For instance, a free carboxyl group of a compound of the invention can be derivatized as an amide or alkyl ester. As another example, compounds of this invention comprising free hydroxy groups can be derivatized as prodrugs by converting the hydroxy group into a group such as, but not limited to, a phosphate ester, hemisuccinate, dimethylaminoacetate, or phosphoryloxymethyloxycarbonyl group, as outlined in Fleisher, D. et al., (1996) Improved oral drug delivery:solubility limitations overcome by the use of prodrugs Advanced Drug Delivery Reviews, 19:115. Carbamate prodrugs of hydroxy and amino groups are also included, as are carbonate prodrugs, sulfonate esters and sulfate esters of hydroxy groups. Derivatization of hydroxy groups as (acyloxy)methyl and (acyloxy)ethyl ethers, wherein the acyl group can be an alkyl ester optionally substituted with groups including, but not limited to, ether, amine and carboxylic acid functionalities, or where the acyl group is an amino acid ester as described above, are also encompassed. Prodrugs of this type are described in J. Med. Chem., (1996), 39:10. More specific examples include replacement of the hydrogen atom of the alcohol group with a group such as (C1-6)alkanoyloxymethyl, 1-((C1-6)alkanoyloxy)ethyl, 1-methyl-1-((C1-6)alkanoyloxy)ethyl, (C1-6)alkoxycarbonyloxymethyl, N—(C1-6)alkoxycarbonylaminomethyl, succinoyl, (C1-6)alkanoyl, alpha-amino(C1-4)alkanoyl, arylacyl and alpha-aminoacyl, or alpha-aminoacyl-alpha-aminoacyl, where each alpha-aminoacyl group is independently selected from the naturally occurring L-amino acids, P(O)(OH)2, —P(O)(O(C1-6)alkyl)2 or glycosyl (the radical resulting from the removal of a hydroxyl group of the hemiacetal form of a carbohydrate).
For additional examples of prodrug derivatives, see, for example, a) Design of Prodrugs, edited by H. Bundgaard, (Elsevier, 1985) and Methods in Enzymology, Vol. 42, p. 309-396, edited by K. Widder, et al. (Academic Press, 1985); b) A Textbook of Drug Design and Development, edited by Krogsgaard-Larsen and H. Bundgaard, Chapter 5 “Design and Application of Prodrugs,” by H. Bundgaard p. 113-191 (1991); c) H. Bundgaard, Advanced Drug Delivery Reviews, 8:1-38 (1992); d) H. Bundgaard, et al., Journal of Pharmaceutical Sciences, 77:285 (1988); and e) N. Kakeya, et al., Chem. Pharm. Bull., 32:692 (1984), each of which is specifically incorporated herein by reference.
Additionally, the present invention provides for metabolites of compounds of the invention. As used herein, a “metabolite” refers to a product produced through metabolism in the body of a specified compound or salt thereof. Such products can result for example from the oxidation, reduction, hydrolysis, amidation, deamidation, esterification, deesterification, enzymatic cleavage, and the like, of the administered compound.
Metabolite products typically are identified by preparing a radiolabelled (e.g., 14C or 3H) isotope of a compound of the invention, administering it parenterally in a detectable dose (e.g., greater than about 0.5 mg/kg) to an animal such as rat, mouse, guinea pig, monkey, or to man, allowing sufficient time for metabolism to occur (typically about 30 seconds to 30 hours) and isolating its conversion products from the urine, blood or other biological samples. These products are easily isolated since they are labeled (others are isolated by the use of antibodies capable of binding epitopes surviving in the metabolite). The metabolite structures are determined in conventional fashion, e.g., by MS, LC/MS or NMR analysis. In general, analysis of metabolites is done in the same way as conventional drug metabolism studies well known to those skilled in the art. The metabolite products, so long as they are not otherwise found in vivo, are useful in diagnostic assays for therapeutic dosing of the compounds of the invention.
In addition to one or more of the compounds provided above (or stereoisomers, geometric isomers, tautomers, solvates, metabolites, isotopes, pharmaceutically acceptable salts, or prodrugs thereof), the invention also provides for compositions and medicaments comprising a compound of the invention and at least one pharmaceutically acceptable carrier, diluent or excipient. The compositions of the invention can be used to selectively inhibit NaV1.7 in patients (e.g, humans).
The term “composition,” as used herein, is intended to encompass a product comprising the specified ingredients in the specified amounts, as well as any product which results, directly or indirectly, from combination of the specified ingredients in the specified amounts. By “pharmaceutically acceptable” it is meant the carrier, diluent or excipient must be compatible with the other ingredients of the formulation and not deleterious to the recipient thereof.
In one embodiment, the invention provides for pharmaceutical compositions (or medicaments) comprising a compound as described herein, and its stereoisomers, geometric isomers, tautomers, solvates, metabolites, isotopes, pharmaceutically acceptable salts, or prodrugs thereof) and a pharmaceutically acceptable carrier, diluent or excipient. In another embodiment, the invention provides for preparing compositions (or medicaments) comprising compounds of the invention. In another embodiment, the invention provides for administering a compound of the invention or a and compositions comprising a compound of the invention to a patient (e.g., a human patient) in need thereof.
Compositions are formulated, dosed, and administered in a fashion consistent with good medical practice. Factors for consideration in this context include the particular disorder being treated, the particular mammal being treated, the clinical condition of the individual patient, the cause of the disorder, the site of delivery of the agent, the method of administration, the scheduling of administration, and other factors known to medical practitioners. The effective amount of the compound to be administered will be governed by such considerations, and is the minimum amount necessary to inhibit NaV1.7 activity as required to prevent or treat the undesired disease or disorder, such as for example, pain. For example, such amount may be below the amount that is toxic to normal cells, or the mammal as a whole.
In one example, the therapeutically effective amount of the compound of the invention administered parenterally per dose will be in the range of about 0.01-100 mg/kg, alternatively about e.g., 0.1 to 20 mg/kg of patient body weight per day, with the typical initial range of compound used being 0.3 to 15 mg/kg/day. The daily does is, in certain embodiments, given as a single daily dose or in divided doses two to six times a day, or in sustained release form. In the case of a 70 kg adult human, the total daily dose will generally be from about 7 mg to about 1,400 mg. This dosage regimen may be adjusted to provide the optimal therapeutic response. The compounds may be administered on a regimen of 1 to 4 times per day, preferably once or twice per day.
The compounds of the present invention may be administered in any convenient administrative form, e.g., tablets, powders, capsules, solutions, dispersions, suspensions, syrups, sprays, suppositories, gels, emulsions, patches, etc. Such compositions may contain components conventional in pharmaceutical preparations, e.g., diluents, carriers, pH modifiers, sweeteners, bulking agents, and further active agents.
The compounds of the invention may be administered by any suitable means, including oral, topical (including buccal and sublingual), rectal, vaginal, transdermal, parenteral, subcutaneous, intraperitoneal, intrapulmonary, intradermal, intrathecal and epidural and intranasal, and, if desired for local treatment, intralesional administration. Parenteral infusions include intramuscular, intravenous, intraarterial, intraperitoneal, intracerebral, intraocular, intralesional or subcutaneous administration.
The compositions comprising compounds as described herein or an embodiment thereof are normally formulated in accordance with standard pharmaceutical practice as a pharmaceutical composition. A typical formulation is prepared by mixing a compound of the present invention and a diluent, carrier or excipient. Suitable diluents, carriers and excipients are well known to those skilled in the art and are described in detail in, e.g., Ansel, Howard C., et al., Ansel's Pharmaceutical Dosage Forms and Drug Delivery Systems. Philadelphia: Lippincott, Williams & Wilkins, 2004; Gennaro, Alfonso R., et al. Remington: The Science and Practice of Pharmacy. Philadelphia: Lippincott, Williams & Wilkins, 2000; and Rowe, Raymond C. Handbook of Pharmaceutical Excipients. Chicago, Pharmaceutical Press, 2005. The formulations may also include one or more buffers, stabilizing agents, surfactants, wetting agents, lubricating agents, emulsifiers, suspending agents, preservatives, antioxidants, opaquing agents, glidants, processing aids, colorants, sweeteners, perfuming agents, flavoring agents, diluents and other known additives to provide an elegant presentation of the drug (i.e., a compound of the present invention or pharmaceutical composition thereof) or aid in the manufacturing of the pharmaceutical product (i.e., medicament).
Suitable carriers, diluents and excipients are well known to those skilled in the art and include materials such as carbohydrates, waxes, water soluble and/or swellable polymers, hydrophilic or hydrophobic materials, gelatin, oils, solvents, water and the like. The particular carrier, diluent or excipient used will depend upon the means and purpose for which a compound of the present invention is being applied. Solvents are generally selected based on solvents recognized by persons skilled in the art as safe (GRAS) to be administered to a mammal. In general, safe solvents are non-toxic aqueous solvents such as water and other non-toxic solvents that are soluble or miscible in water. Suitable aqueous solvents include water, ethanol, propylene glycol, polyethylene glycols (e.g., PEG 400, PEG 300), etc. and mixtures thereof. The formulations can also include one or more buffers, stabilizing agents, surfactants, wetting agents, lubricating agents, emulsifiers, suspending agents, preservatives, antioxidants, opaquing agents, glidants, processing aids, colorants, sweeteners, perfuming agents, flavoring agents and other known additives to provide an elegant presentation of the drug (i.e., a compound of the present invention or pharmaceutical composition thereof) or aid in the manufacturing of the pharmaceutical product (i.e., medicament).
Acceptable diluents, carriers, excipients and stabilizers are nontoxic to recipients at the dosages and concentrations employed, and include buffers such as phosphate, citrate and other organic acids; antioxidants including ascorbic acid and methionine; preservatives (such as octadecyldimethylbenzyl ammonium chloride; hexamethonium chloride; benzalkonium chloride, benzethonium chloride; phenol, butyl or benzyl alcohol; alkyl parabens such as methyl or propyl paraben; catechol; resorcinol; cyclohexanol; 3-pentanol; and m-cresol); low molecular weight (less than about 10 residues) polypeptides; proteins, such as serum albumin, gelatin, or immunoglobulins; hydrophilic polymers such as polyvinylpyrrolidone; amino acids such as glycine, glutamine, asparagine, histidine, arginine, or lysine; monosaccharides, disaccharides and other carbohydrates including glucose, mannose, or dextrins; chelating agents such as EDTA; sugars such as sucrose, mannitol, trehalose or sorbitol; salt-forming counter-ions such as sodium; metal complexes (e.g., Zn-protein complexes); and/or non-ionic surfactants such as TWEEN™, PLURONICS™ or polyethylene glycol (PEG). A active pharmaceutical ingredient of the invention (e.g., compound off of the invention) can also be entrapped in microcapsules prepared, for example, by coacervation techniques or by interfacial polymerization, for example, hydroxymethylcellulose or gelatin-microcapsules and poly-(methylmethacylate) microcapsules, respectively, in colloidal drug delivery systems (for example, liposomes, albumin microspheres, microemulsions, nano-particles and nanocapsules) or in macroemulsions. Such techniques are disclosed in Remington: The Science and Practice of Pharmacy: Remington the Science and Practice of Pharmacy (2005) 21st Edition, Lippincott Williams & Wilkins, Philidelphia, Pa.
Sustained-release preparations of a compound can be prepared. Suitable examples of sustained-release preparations include semipermeable matrices of solid hydrophobic polymers containing a compound as described herein, which matrices are in the form of shaped articles, e.g., films, or microcapsules. Examples of sustained-release matrices include polyesters, hydrogels (for example, poly(2-hydroxyethyl-methacrylate), or poly(vinyl alcohol)), polylactides (U.S. Pat. No. 3,773,919), copolymers of L-glutamic acid and gamma-ethyl-L-glutamate (Sidman et al., Biopolymers 22:547, 1983), non-degradable ethylene-vinyl acetate (Langer et al., J. Biomed. Mater. Res. 15:167, 1981), degradable lactic acid-glycolic acid copolymers such as the LUPRON DEPOT™ (injectable microspheres composed of lactic acid-glycolic acid copolymer and leuprolide acetate) and poly-D-(−)-3-hydroxybutyric acid (EP 133,988A). Sustained release compositions also include liposomally entrapped compounds, which can be prepared by methods known per se (Epstein et al., Proc. Natl. Acad. Sci. U.S.A. 82:3688, 1985; Hwang et al., Proc. Natl. Acad. Sci. U.S.A. 77:4030, 1980; U.S. Pat. Nos. 4,485,045 and 4,544,545; and EP 102,324A). Ordinarily, the liposomes are of the small (about 200-800 Angstroms) unilamelar type in which the lipid content is greater than about 30 mol % cholesterol, the selected proportion being adjusted for the optimal therapy.
The formulations include those suitable for the administration routes detailed herein. The formulations can conveniently be presented in unit dosage form and can be prepared by any of the methods well known in the art of pharmacy. Techniques and formulations generally are found in Remington: The Science and Practice of Pharmacy: Remington the Science and Practice of Pharmacy (2005) 21st Edition, Lippincott Williams & Wilkins, Philidelphia, Pa. Such methods include the step of bringing into association the active ingredient with the carrier which constitutes one or more accessory ingredients.
In general the formulations are prepared by uniformly and intimately bringing into association the active ingredient with liquid carriers, diluents or excipients or finely divided solid carriers, diluents or excipients, or both, and then, if necessary, shaping the product. A typical formulation is prepared by mixing a compound of the present invention and a carrier, diluent or excipient. The formulations can be prepared using conventional dissolution and mixing procedures. For example, the bulk drug substance (i.e., compound of the present invention or stabilized form of the compound (e.g., complex with a cyclodextrin derivative or other known complexation agent) is dissolved in a suitable solvent in the presence of one or more of the excipients described above. A compound of the present invention is typically formulated into pharmaceutical dosage forms to provide an easily controllable dosage of the drug and to enable patient compliance with the prescribed regimen.
In one example, compounds as described herein may be formulated by mixing at ambient temperature at the appropriate pH, and at the desired degree of purity, with physiologically acceptable carriers, i.e., carriers that are non-toxic to recipients at the dosages and concentrations employed into a galenical administration form. The pH of the formulation depends mainly on the particular use and the concentration of compound, but preferably ranges anywhere from about 3 to about 8. In one example, a compound of the invention is formulated in an acetate buffer, at pH 5. In another embodiment, a compound of the invention is sterile. The compound may be stored, for example, as a solid or amorphous composition, as a lyophilized formulation or as an aqueous solution.
Formulations of a compound as described herein suitable for oral administration can be prepared as discrete units such as pills, capsules, cachets or tablets each containing a predetermined amount of a compound of the invention.
Compressed tablets can be prepared by compressing in a suitable machine the active ingredient in a free-flowing form such as a powder or granules, optionally mixed with a binder, lubricant, inert diluent, preservative, surface active or dispersing agent. Molded tablets can be made by molding in a suitable machine a mixture of the powdered active ingredient moistened with an inert liquid diluent. The tablets can optionally be coated or scored and optionally are formulated so as to provide slow or controlled release of the active ingredient therefrom.
Tablets, troches, lozenges, aqueous or oil suspensions, dispersible powders or granules, emulsions, hard or soft capsules, e.g., gelatin capsules, syrups or elixirs can be prepared for oral use. Formulations of a compound o as described herein intended for oral use can be prepared according to any method known to the art for the manufacture of pharmaceutical compositions and such compositions can contain one or more agents including sweetening agents, flavoring agents, coloring agents and preserving agents, in order to provide a palatable preparation. Tablets containing the active ingredient in admixture with non-toxic pharmaceutically acceptable excipient which are suitable for manufacture of tablets are acceptable. These excipients can be, for example, inert diluents, such as calcium or sodium carbonate, lactose, calcium or sodium phosphate; granulating and disintegrating agents, such as maize starch, or alginic acid; binding agents, such as starch, gelatin or acacia; and lubricating agents, such as magnesium stearate, stearic acid or talc. Tablets can be uncoated or can be coated by known techniques including microencapsulation to delay disintegration and adsorption in the gastrointestinal tract and thereby provide a sustained action over a longer period. For example, a time delay material such as glyceryl monostearate or glyceryl distearate alone or with a wax can be employed.
An example of a suitable oral administration form is a tablet containing about 1 mg, 5 mg, 10 mg, 25 mg, 30 mg, 50 mg, 80 mg, 100 mg, 150 mg, 250 mg, 300 mg and 500 mg of the compound of the invention compounded with about 90-30 mg anhydrous lactose, about 5-40 mg sodium croscarmellose, about 5-30 mg polyvinylpyrrolidone (PVP) K30, and about 1-10 mg magnesium stearate. The powdered ingredients are first mixed together and then mixed with a solution of the PVP. The resulting composition can be dried, granulated, mixed with the magnesium stearate and compressed to tablet form using conventional equipment. An example of an aerosol formulation can be prepared by dissolving the compound, for example 5-400 mg, of the invention in a suitable buffer solution, e.g. a phosphate buffer, adding a tonicifier, e.g. a salt such sodium chloride, if desired. The solution may be filtered, e.g., using a 0.2 micron filter, to remove impurities and contaminants.
For treatment of the eye or other external tissues, e.g., mouth and skin, the formulations are preferably applied as a topical ointment or cream containing the active ingredient(s) in an amount of, for example, 0.075 to 20% w/w. When formulated in an ointment, the active ingredient can be employed with either a paraffinic or a water-miscible ointment base. Alternatively, the active ingredients can be formulated in a cream with an oil-in-water cream base. If desired, the aqueous phase of the cream base can include a polyhydric alcohol, i.e., an alcohol having two or more hydroxyl groups such as propylene glycol, butane 1,3-diol, mannitol, sorbitol, glycerol and polyethylene glycol (including PEG 400) and mixtures thereof. The topical formulations can desirably include a compound which enhances absorption or penetration of the active ingredient through the skin or other affected areas. Examples of such dermal penetration enhancers include dimethyl sulfoxide and related analogs.
The oily phase of the emulsions of this invention can be constituted from known ingredients in a known manner. While the phase can comprise merely an emulsifier, it desirably comprises a mixture of at least one emulsifier with a fat or an oil or with both a fat and an oil. Preferably, a hydrophilic emulsifier is included together with a lipophilic emulsifier which acts as a stabilizer. It is also preferred to include both an oil and a fat. Together, the emulsifier(s) with or without stabilizer(s) make up the so-called emulsifying wax, and the wax together with the oil and fat make up the so-called emulsifying ointment base which forms the oily dispersed phase of the cream formulations. Emulsifiers and emulsion stabilizers suitable for use in the formulation of the invention include Tween® 60, Span® 80, cetostearyl alcohol, benzyl alcohol, myristyl alcohol, glyceryl mono-stearate and sodium lauryl sulfate.
In one aspect of topical applications, it is desired to administer an effective amount of a pharmaceutical composition according to the invention to target area, e.g., skin surfaces, mucous membranes, and the like, which are adjacent to peripheral neurons which are to be treated. This amount will generally range from about 0.0001 mg to about 1 g of a compound of the invention per application, depending upon the area to be treated, whether the use is diagnostic, prophylactic or therapeutic, the severity of the symptoms, and the nature of the topical vehicle employed. A preferred topical preparation is an ointment, wherein about 0.001 to about 50 mg of active ingredient is used per cc of ointment base. The pharmaceutical composition can be formulated as transdermal compositions or transdermal delivery devices (“patches”). Such compositions include, for example, a backing, active compound reservoir, a control membrane, liner and contact adhesive. Such transdermal patches may be used to provide continuous pulsatile, or on demand delivery of the compounds of the present invention as desired.
Aqueous suspensions of a compound o as described herein contain the active materials in admixture with excipients suitable for the manufacture of aqueous suspensions. Such excipients include a suspending agent, such as sodium carboxymethylcellulose, croscarmellose, povidone, methylcellulose, hydroxypropyl methylcellulose, sodium alginate, polyvinylpyrrolidone, gum tragacanth and gum acacia, and dispersing or wetting agents such as a naturally occurring phosphatide (e.g., lecithin), a condensation product of an alkylene oxide with a fatty acid (e.g., polyoxyethylene stearate), a condensation product of ethylene oxide with a long chain aliphatic alcohol (e.g., heptadecaethyleneoxycetanol), a condensation product of ethylene oxide with a partial ester derived from a fatty acid and a hexitol anhydride (e.g., polyoxyethylene sorbitan monooleate). The aqueous suspension can also contain one or more preservatives such as ethyl or n-propyl p-hydroxybenzoate, one or more coloring agents, one or more flavoring agents and one or more sweetening agents, such as sucrose or saccharin.
Formulations of a compound as described herein can be in the form of a sterile injectable preparation, such as a sterile injectable aqueous or oleaginous suspension. This suspension can be formulated according to the known art using those suitable dispersing or wetting agents and suspending agents which have been mentioned above. The sterile injectable preparation can also be a sterile injectable solution or suspension in a non-toxic parenterally acceptable diluent or solvent, such as a solution in 1,3-butanediol or prepared as a lyophilized powder. Among the acceptable vehicles and solvents that can be employed are water, Ringer's solution and isotonic sodium chloride solution. In addition, sterile fixed oils can conventionally be employed as a solvent or suspending medium. For this purpose any bland fixed oil can be employed including synthetic mono- or diglycerides. In addition, fatty acids such as oleic acid can likewise be used in the preparation of injectables.
The amount of active ingredient that can be combined with the carrier material to produce a single dosage form will vary depending upon the host treated and the particular mode of administration. For example, a time-release formulation intended for oral administration to humans can contain approximately 1 to 1000 mg of active material compounded with an appropriate and convenient amount of carrier material which can vary from about 5 to about 95% of the total compositions (weight:weight). The pharmaceutical composition can be prepared to provide easily measurable amounts for administration. For example, an aqueous solution intended for intravenous infusion can contain from about 3 to 500 μg of the active ingredient per milliliter of solution in order that infusion of a suitable volume at a rate of about 30 mL/hr can occur.
Formulations suitable for parenteral administration include aqueous and non-aqueous sterile injection solutions which can contain anti-oxidants, buffers, bacteriostats and solutes which render the formulation isotonic with the blood of the intended recipient; and aqueous and non-aqueous sterile suspensions which can include suspending agents and thickening agents.
Formulations suitable for topical administration to the eye also include eye drops wherein the active ingredient is dissolved or suspended in a suitable carrier, especially an aqueous solvent for the active ingredient. The active ingredient is preferably present in such formulations in a concentration of about 0.5 to 20% w/w, for example about 0.5 to 10% w/w, for example about 1.5% w/w.
Formulations suitable for topical administration in the mouth include lozenges comprising the active ingredient in a flavored basis, usually sucrose and acacia or tragacanth; pastilles comprising the active ingredient in an inert basis such as gelatin and glycerin, or sucrose and acacia; and mouthwashes comprising the active ingredient in a suitable liquid carrier.
Formulations for rectal administration can be presented as a suppository with a suitable base comprising for example cocoa butter or a salicylate.
Formulations suitable for intrapulmonary or nasal administration have a particle size for example in the range of 0.1 to 500 microns (including particle sizes in a range between 0.1 and 500 microns in increments microns such as 0.5, 1, 30 microns, 35 microns, etc.), which is administered by rapid inhalation through the nasal passage or by inhalation through the mouth so as to reach the alveolar sacs. Suitable formulations include aqueous or oily solutions of the active ingredient. Formulations suitable for aerosol or dry powder administration can be prepared according to conventional methods and can be delivered with other therapeutic agents such as compounds heretofore used in the treatment of disorders as described below.
The formulations can be packaged in unit-dose or multi-dose containers, for example sealed ampoules and vials, and can be stored in a freeze-dried (lyophilized) condition requiring only the addition of the sterile liquid carrier, for example water, for injection immediately prior to use. Extemporaneous injection solutions and suspensions are prepared from sterile powders, granules and tablets of the kind previously described. Preferred unit dosage formulations are those containing a daily dose or unit daily sub-dose, as herein above recited, or an appropriate fraction thereof, of the active ingredient.
When the binding target is located in the brain, certain embodiments of the invention provide for a compound as described herein to traverse the blood-brain barrier. Certain neurodegenerative diseases are associated with an increase in permeability of the blood-brain barrier, such that a compound of the invention can be readily introduced to the brain. When the blood-brain barrier remains intact, several art-known approaches exist for transporting molecules across it, including, but not limited to, physical methods, lipid-based methods, and receptor and channel-based methods.
Physical methods of transporting a compound o as described herein across the blood-brain barrier include, but are not limited to, circumventing the blood-brain barrier entirely, or by creating openings in the blood-brain barrier.
Circumvention methods include, but are not limited to, direct injection into the brain (see, e.g., Papanastassiou et al., Gene Therapy 9:398-406, 2002), interstitial infusion/convection-enhanced delivery (see, e.g., Bobo et al., Proc. Natl. Acad. Sci. U.S.A. 91:2076-2080, 1994), and implanting a delivery device in the brain (see, e.g., Gill et al., Nature Med. 9:589-595, 2003; and Gliadel Wafers™, Guildford Pharmaceutical). Methods of creating openings in the barrier include, but are not limited to, ultrasound (see, e.g., U.S. Patent Publication No. 2002/0038086), osmotic pressure (e.g., by administration of hypertonic mannitol (Neuwelt, E. A., Implication of the Blood-Brain Barrier and its Manipulation, Volumes 1 and 2, Plenum Press, N.Y., 1989)), and permeabilization by, e.g., bradykinin or permeabilizer A-7 (see, e.g., U.S. Pat. Nos. 5,112,596, 5,268,164, 5,506,206, and 5,686,416).
Lipid-based methods of transporting a compound o as described herein across the blood-brain barrier include, but are not limited to, encapsulating the a compound o as described herein in liposomes that are coupled to antibody binding fragments that bind to receptors on the vascular endothelium of the blood-brain barrier (see, e.g., U.S. Patent Application Publication No. 2002/0025313), and coating a compound as described herein in low-density lipoprotein particles (see, e.g., U.S. Patent Application Publication No. 2004/0204354) or apolipoprotein E (see, e.g., U.S. Patent Application Publication No. 2004/0131692).
Receptor and channel-based methods of transporting a compound o as described herein across the blood-brain barrier include, but are not limited to, using glucocorticoid blockers to increase permeability of the blood-brain barrier (see, e.g., U.S. Patent Application Publication Nos. 2002/0065259, 2003/0162695, and 2005/0124533); activating potassium channels (see, e.g., U.S. Patent Application Publication No. 2005/0089473), inhibiting ABC drug transporters (see, e.g., U.S. Patent Application Publication No. 2003/0073713); coating a compound o as described herein with a transferrin and modulating activity of the one or more transferrin receptors (see, e.g., U.S. Patent Application Publication No. 2003/0129186), and cationizing the antibodies (see, e.g., U.S. Pat. No. 5,004,697).
For intracerebral use, in certain embodiments, the compounds can be administered continuously by infusion into the fluid reservoirs of the CNS, although bolus injection may be acceptable. The inhibitors can be administered into the ventricles of the brain or otherwise introduced into the CNS or spinal fluid. Administration can be performed by use of an indwelling catheter and a continuous administration means such as a pump, or it can be administered by implantation, e.g., intracerebral implantation of a sustained-release vehicle. More specifically, the inhibitors can be injected through chronically implanted cannulas or chronically infused with the help of osmotic minipumps. Subcutaneous pumps are available that deliver proteins through a small tubing to the cerebral ventricles. Highly sophisticated pumps can be refilled through the skin and their delivery rate can be set without surgical intervention. Examples of suitable administration protocols and delivery systems involving a subcutaneous pump device or continuous intracerebroventricular infusion through a totally implanted drug delivery system are those used for the administration of dopamine, dopamine agonists, and cholinergic agonists to Alzheimer's disease patients and animal models for Parkinson's disease, as described by Harbaugh, J. Neural Transm. Suppl. 24:271, 1987; and DeYebenes et al., Mov. Disord. 2: 143, 1987.
A compound as described herein used in the invention are formulated, dosed, and administered in a fashion consistent with good medical practice. Factors for consideration in this context include the particular disorder being treated, the particular mammal being treated, the clinical condition of the individual patient, the cause of the disorder, the site of delivery of the agent, the method of administration, the scheduling of administration, and other factors known to medical practitioners. A compound as described herein need not be, but is optionally formulated with one or more agent currently used to prevent or treat the disorder in question. The effective amount of such other agents depends on the amount of a compound of the invention present in the formulation, the type of disorder or treatment, and other factors discussed above.
These are generally used in the same dosages and with administration routes as described herein, or about from 1 to 99% of the dosages described herein, or in any dosage and by any route that is empirically/clinically determined to be appropriate.
For the prevention or treatment of disease, the appropriate dosage of a compound as described herein (when used alone or in combination with other agents) will depend on the type of disease to be treated, the properties of the compound, the severity and course of the disease, whether the compound is administered for preventive or therapeutic purposes, previous therapy, the patient's clinical history and response to the compound, and the discretion of the attending physician. The compound is suitably administered to the patient at one time or over a series of treatments. Depending on the type and severity of the disease, about 1 μg/kg to 15 mg/kg (e.g., 0.1 mg/kg-10 mg/kg) of compound can be an initial candidate dosage for administration to the patient, whether, for example, by one or more separate administrations, or by continuous infusion. One typical daily dosage might range from about 1 μg kg to 100 mg/kg or more, depending on the factors mentioned above. For repeated administrations over several days or longer, depending on the condition, the treatment would generally be sustained until a desired suppression of disease symptoms occurs. One exemplary dosage of a compound of the invention would be in the range from about 0.05 mg/kg to about 10 mg/kg. Thus, one or more doses of about 0.5 mg/kg, 2.0 mg/kg, 4.0 mg/kg, or 10 mg/kg (or any combination thereof) may be administered to the patient. Such doses may be administered intermittently, e.g., every week or every three weeks (e.g., such that the patient receives from about two to about twenty, or, e.g., about six doses of the antibody). An initial higher loading dose, followed by one or more lower doses may be administered. An exemplary dosing regimen comprises administering an initial loading dose of about 4 mg/kg, followed by a weekly maintenance dose of about 2 mg kg of the compound. However, other dosage regimens may be useful. The progress of this therapy is easily monitored by conventional techniques and assays.
Other typical daily dosages might range from, for example, about 1 g/kg to up to 100 mg/kg or more (e.g., about 1 μg kg to 1 mg/kg, about 1 μg/kg to about 5 mg/kg, about 1 mg kg to 10 mg/kg, about 5 mg/kg to about 200 mg/kg, about 50 mg/kg to about 150 mg/mg, about 100 mg/kg to about 500 mg/kg, about 100 mg/kg to about 400 mg/kg, and about 200 mg/kg to about 400 mg/kg), depending on the factors mentioned above. Typically, the clinician will administer a compound until a dosage is reached that results in improvement in or, optimally, elimination of, one or more symptoms of the treated disease or condition. The progress of this therapy is easily monitored by conventional assays. One or more agent provided herein may be administered together or at different times (e.g., one agent is administered prior to the administration of a second agent). One or more agent may be administered to a subject using different techniques (e.g., one agent may be administered orally, while a second agent is administered via intramuscular injection or intranasally). One or more agent may be administered such that the one or more agent has a pharmacologic effect in a subject at the same time. Alternatively, one or more agent may be administered, such that the pharmacological activity of the first administered agent is expired prior the administration of one or more secondarily administered agents (e.g., 1, 2, 3, or 4 secondarily administered agents).
The compounds of the invention modulate, preferably inhibit, ion flux through a voltage-dependent sodium channel in a mammal, (e.g, a human). Any such modulation, whether it be partial or complete inhibition or prevention of ion flux, is sometimes referred to herein as “blocking” and corresponding compounds as “blockers” or “inhibitors”. In general, the compounds of the invention modulate the activity of a sodium channel downwards by inhibiting the voltage-dependent activity of the sodium channel, and/or reduce or prevent sodium ion flux across a cell membrane by preventing sodium channel activity such as ion flux.
Accordingly, the compounds of the invention are sodium channel blockers and are therefore useful for treating diseases and conditions in mammals, for example humans, and other organisms, including all those diseases and conditions which are the result of aberrant voltage-dependent sodium channel biological activity or which may be ameliorated by modulation of voltage-dependent sodium channel biological activity. In particular, the compounds of the invention, i.e., the compounds of formula (I) and embodiments and (or stereoisomers, geometric isomers, tautomers, solvates, metabolites, isotopes, pharmaceutically acceptable salts, or prodrugs thereof), are useful for treating diseases and conditions in mammals, for example humans, which are the result of aberrant voltage-dependent NaV1.7 biological activity or which may be ameliorated by the modulation, preferably the inhibition, of NaV1.7 biological activity. In certain aspects, the compounds of the invention selectively inhibit NaV1.7 over NaV1.5.
As defined herein, a sodium channel-mediated disease or condition refers to a disease or condition in a mammal, preferably a human, which is ameliorated upon modulation of the sodium channel and includes, but is not limited to, pain, central nervous conditions such as epilepsy, anxiety, depression and bipolar disease; cardiovascular conditions such as arrhythmias, atrial fibrillation and ventricular fibrillation; neuromuscular conditions such as restless leg syndrome and muscle paralysis or tetanus; neuroprotection against stroke, neural trauma and multiple sclerosis; and channelopathies such as erythromyalgia and familial rectal pain syndrome.
In one aspect, the present invention relates to compounds, pharmaceutical compositions and methods of using the compounds and pharmaceutical compositions for the treatment of sodium channel-mediated diseases in mammals, preferably humans and preferably diseases and conditions related to pain, central nervous conditions such as epilepsy, anxiety, depression and bipolar disease; cardiovascular conditions such as arrhythmias, atrial fibrillation and ventricular fibrillation; neuromuscular conditions such as restless leg syndrome and muscle paralysis or tetanus; neuroprotection against stroke, neural trauma and multiple sclerosis; and channelopathies such as erythromyalgia and familial rectal pain syndrome, by administering to a mammal, for example a human, in need of such treatment an effective amount of a sodium channel blocker modulating, especially inhibiting, agent.
A sodium channel-mediated disease or condition also includes pain associated with HIV, HIV treatment induced neuropathy, trigeminal neuralgia, glossopharyngeal neuralgia, neuropathy secondary to metastatic infiltration, adiposis dolorosa, thalamic lesions, hypertension, autoimmune disease, asthma, drug addiction (e.g., opiate, benzodiazepine, amphetamine, cocaine, alcohol, butane inhalation), Alzheimer, dementia, age-related memory impairment, Korsakoff syndrome, restenosis, urinary dysfunction, incontinence, Parkinson's disease, cerebrovascular ischemia, neurosis, gastrointestinal disease, sickle cell anemia, transplant rejection, heart failure, myocardial infarction, reperfusion injury, intermittant claudication, angina, convulsion, respiratory disorders, cerebral or myocardial ischemias, long-QT syndrome, Catecholeminergic polymorphic ventricular tachycardia, ophthalmic diseases, spasticity, spastic paraplegia, myopathies, myasthenia gravis, paramyotonia congentia, hyperkalemic periodic paralysis, hypokalemic periodic paralysis, alopecia, anxiety disorders, psychotic disorders, mania, paranoia, seasonal affective disorder, panic disorder, obsessive compulsive disorder (OCD), phobias, autism, Aspergers Syndrome, Retts syndrome, disintegrative disorder, attention deficit disorder, aggressivity, impulse control disorders, thrombosis, pre clampsia, congestive cardiac failure, cardiac arrest, Freidrich's ataxia, Spinocerebellear ataxia, myelopathy, radiculopathy, systemic lupus erythamatosis, granulomatous disease, olivo-ponto-cerebellar atrophy, spinocerebellar ataxia, episodic ataxia, myokymia, progressive pallidal atrophy, progressive supranuclear palsy and spasticity, traumatic brain injury, cerebral oedema, hydrocephalus injury, spinal cord injury, anorexia nervosa, bulimia, Prader-Willi syndrome, obesity, optic neuritis, cataract, retinal haemorrhage, ischaemic retinopathy, retinitis pigmentosa, acute and chronic glaucoma, macular degeneration, retinal artery occlusion, Chorea, Huntington's chorea, cerebral edema, proctitis, post-herpetic neuralgia, eudynia, heat sensitivity, sarcoidosis, irritable bowel syndrome, Tourette syndrome, Lesch-Nyhan Syndrome, Brugado syndrome, Liddle syndrome, Crohns disease, multiple sclerosis and the pain associated with multiple sclerosis (MS), amyotrophic lateral sclerosis (ALS), disseminated sclerosis, diabetic neuropathy, peripheral neuropathy, charcot marie tooth syndrome, arthritic, rheumatoid arthritis, osteoarthritis, chondrocalcinosis, atherosclerosis, paroxysmal dystonia, myasthenia syndromes, myotonia, myotonic dystrophy, muscular dystrophy, malignant hyperthermia, cystic fibrosis, pseudoaldosteronism, rhabdomyolysis, mental handicap, hypothyroidism, bipolar depression, anxiety, schizophrenia, sodium channel toxin related illnesses, familial erythromelalgia, primary erythromelalgia, rectal pain, cancer, epilepsy, partial and general tonic seizures, febrile seizures, absence seizures (petit mal), myoclonic seizures, atonic seizures, clonic seizures, Lennox Gastaut, West Syndome (infantile spasms), multiresistant seizures, seizure prophylaxis (anti-epileptogenic), familial Mediterranean fever syndrome, gout, restless leg syndrome, arrhythmias, fibromyalgia, neuroprotection under ischaemic conditions caused by stroke or neural trauma, tachy-arrhythmias, atrial fibrillation and ventricular fibrillation and as a general or local anaesthetic.
As used herein, the term “pain” refers to all categories of pain and is recognized to include, but is not limited to, neuropathic pain, inflammatory pain, nociceptive pain, idiopathic pain, neuralgic pain, orofacial pain, burn pain, burning mouth syndrome, somatic pain, visceral pain, myofacial pain, dental pain, cancer pain, chemotherapy pain, trauma pain, surgical pain, post-surgical pain, childbirth pain, labor pain, chronic regional pain syndrome (CRPS), reflex sympathetic dystrophy, brachial plexus avulsion, neurogenic bladder, acute pain (e.g., musculoskeletal and post-operative pain), chronic pain, persistent pain, peripherally mediated pain, centrally mediated pain, chronic headache, migraine headache, familial hemiplegic migraine, conditions associated with cephalic pain, sinus headache, tension headache, phantom limb pain, peripheral nerve injury, pain following stroke, thalamic lesions, radiculopathy, HIV pain, post-herpetic pain, non-cardiac chest pain, irritable bowel syndrome and pain associated with bowel disorders and dyspepsia, and combinations thereof.
Furthermore, sodium channel blockers have clinical uses in addition to pain. The present invention therefore also relates to compounds, pharmaceutical compositions and methods of using the compounds and pharmaceutical compositions for the treatment of diseases or conditions such as cancer and pruritus (itch).
Pruritus, commonly known as itch, is a common dermatological condition. While the exact causes of pruritus are complex and incompletely understood, there has long been evidence that itch involves sensory neurons, especially C fibers, similar to those that mediate pain (Schmelz, M., et al., J. Neurosci. (1997), 17: 8003-8). In particular, it is believed that sodium influx through voltage-gated sodium channels is essential for the propagation of itch sensation from the skin. Transmission of the itch impulses results in the unpleasant sensation that elicits the desire or reflex to scratch.
Multiple causes and electrical pathways for eliciting itch are known. In humans, pruritus can be elicited by histamine or PAR-2 agonists such as mucunain that activate distinct populations of C fibers (Namer, B., et al., J. Neurophysiol. (2008), 100: 2062-9). A variety of neurotrophic peptides are known to mediate itch in animal models (Wang, H., and Yosipovitch, G., International Journal of Dermatology (2010), 49: 1-11). Itch can also be elicited by opioids, evidence of distinct pharmacology from that of pain responses.
There exists a complex interaction between itch and pain responses that arises in part from the overlapping sensory input from the skin (Ikoma, A., et al., Arch. Dermatol. (2003), 139: 1475-8) and also from the diverse etiology of both pain and pruritus. Pain responses can exacerbate itching by enhancing central sensitization or lead to inhibition of painful scratching. Particularly severe forms of chronic itch occur when pain responses are absent, as in the case of post-herpetic itch (Oaklander, A. L., et al., Pain (2002), 96: 9-12).
The compounds of the invention can also be useful for treating pruritus. The rationale for treating itch with inhibitors of voltage-gated sodium channels, especially NaV1.7, is as follows:
The propagation of electrical activity in the C fibers that sense pruritinergic stimulants requires sodium entry through voltage-gated sodium channels.
NaV1.7 is expressed in the C fibers and kerotinocytes in human skin (Zhao, P., et al., Pain (2008), 139: 90-105).
A gain of function mutation of NaV1.7 (L858F) that causes erythromelalgia also causes chronic itch (Li, Y., et al., Clinical and Experimental Dermatology (2009), 34: e313-e4).
Chronic itch can be alleviated with treatment by sodium channel blockers, such as the local anesthetic lidocaine (Oaklander, A. L., et al., Pain (2002), 96: 9-12; Villamil, A. G., et al., The American Journal of Medicine (2005), 118: 1160-3). In these reports, lidocaine was effective when administered either intravenously or topically (a Lidoderm patch). Lidocaine can have multiple activities at the plasma concentrations achieved when administered systemically, but when administered topically, the plasma concentrations are only about 1 μM (Center for Drug Evaluation and Research NDA 20-612). At these concentrations, lidocaine is selective for sodium channel block and inhibits spontaneous electrical activity in C fibers and pain responses in animal models (Xiao, W. H., and Bennett, G. J., Pain (2008), 137: 218-28). The types of itch or skin irritation, include, but are not limited to:
psoriatic pruritus, itch due to hemodyalisis, aguagenic pruritus, and itching caused by skin disorders (e.g., contact dermatitis), systemic disorders, neuropathy, psychogenic factors or a mixture thereof;
itch caused by allergic reactions, insect bites, hypersensitivity (e.g., dry skin, acne, eczema, psoriasis), inflammatory conditions or injury;
itch associated with vulvar vestibulitis; and
skin irritation or inflammatory effect from administration of another therapeutic such as, for example, antibiotics, antivirals and antihistamines.
The compounds of the invention are also useful in treating certain cancers, such as hormone sensitive cancers, such as prostate cancer (adenocarcinoma), breast cancer, ovarian cancer, testicular cancer and thyroid neoplasia, in a mammal, preferably a human. The voltage gated sodium channels have been demonstrated to be expressed in prostate and breast cancer cells. Up-regulation of neonatal NaV1.5 occurs as an integral part of the metastatic process in human breast cancer and could serve both as a novel marker of the metastatic phenotype and a therapeutic target (Clin. Cancer Res. (2005), Aug. 1; 11(15): 5381-9). Functional expression of voltage-gated sodium channel alpha-subunits, specifically NaV1.7, is associated with strong metastatic potential in prostate cancer (CaP) in vitro. Voltage-gated sodium channel alpha-subunits immunostaining, using antibodies specific to the sodium channel alpha subunit was evident in prostatic tissues and markedly stronger in CaP vs non-CaP patients (Prostate Cancer Prostatic Dis., 2005; 8(3):266-73). See also Diss, J. K. J., et al., Mol. Cell. Neurosci. (2008), 37:537-547 and Kis-Toth, K., et al., The Journal of Immunology (2011), 187:1273-1280.
In consideration of the above, in one embodiment, the present invention provides a method for treating a mammal for, or protecting a mammal from developing, a sodium channel-mediated disease, especially pain, comprising administering to the mammal, especially a human, in need thereof, a therapeutically effective amount of a compound of the invention or a pharmaceutical composition comprising a therapeutically effective amount of a compound of the invention wherein the compound modulates the activity of one or more voltage-dependent sodium channels.
In another embodiment of the invention is a method of treating a disease or a condition in a mammal, preferably a human, wherein the disease or condition is selected from the group consisting of pain, depression, cardiovascular diseases, respiratory diseases, and psychiatric diseases, and combinations thereof, and wherein the method comprises administering to the mammal in need thereof a therapeutically effective amount of an embodiment of a compound of the invention, as set forth above, as a stereoisomer, enantiomer or tautomer thereof or mixtures thereof, or a pharmaceutically acceptable salt, solvate or prodrug thereof, or a pharmaceutical composition comprising a therapeutically effective amount of a compound of the invention, as set forth above, as a stereoisomer, enantiomer or tautomer thereof or mixtures thereof, or a pharmaceutically acceptable salt, solvate or prodrug thereof, and a pharmaceutically acceptable excipient.
One embodiment of this embodiment is wherein the disease or condition is selected from the group consisting of acute pain, chronic pain, neuropathic pain, inflammatory pain, visceral pain, cancer pain, chemotherapy pain, trauma pain, surgical pain, post surgical pain, childbirth pain, labor pain, neurogenic bladder, ulcerative colitis, persistent pain, peripherally mediated pain, centrally mediated pain, chronic headache, migraine headache, sinus headache, tension headache, phantom limb pain, peripheral nerve injury, and combinations thereof.
Another embodiment of this embodiment is wherein the disease or condition is selected from the group consisting of pain associated with HIV, HIV treatment induced neuropathy, trigeminal neuralgia, post herpetic neuralgia, eudynia, heat sensitivity, tosarcoidosis, irritable bowel syndrome, Crohns disease, pain associated with multiple sclerosis (MS), amyotrophic lateral sclerosis (ALS), diabetic neuropathy, peripheral neuropathy, arthritic, rheumatoid arthritis, osteoarthritis, atherosclerosis, paroxysmal dystonia, myasthenia syndromes, myotonia, malignant hyperthermia, cystic fibrosis, pseudoaldosteronism, rhabdomyolysis, hypothyroidism, bipolar depression, anxiety, schizophrenia, sodium channel toxin related illnesses, familial erythromelalgia, primary erythromelalgia, familial rectal pain, cancer, epilepsy, partial and general tonic seizures, restless leg syndrome, arrhythmias, fibromyalgia, neuroprotection under ischaemic conditions caused by stroke or neural trauma, tachy arrhythmias, atrial fibrillation and ventricular fibrillation.
Another embodiment of the invention is a method of treating, but not preventing, pain in a mammal, wherein the method comprises administering to the mammal in need thereof a therapeutically effective amount of a compound of the invention, as set forth above, as a stereoisomer, enantiomer or tautomer thereof or mixtures thereof, or a pharmaceutically acceptable salt, solvate or prodrug thereof, or a pharmaceutical composition comprising a therapeutically effective amount of a compound of the invention, as set forth above, as a stereoisomer, enantiomer or tautomer thereof or mixtures thereof, or a pharmaceutically acceptable salt, solvate or prodrug thereof, and a pharmaceutically acceptable excipient.
One embodiment of this embodiment is a method wherein the pain is selected from the group consisting of neuropathic pain, inflammatory pain, visceral pain, cancer pain, chemotherapy pain, trauma pain, surgical pain, post surgical pain, childbirth pain, labor pain, dental pain, chronic pain, persistent pain, peripherally mediated pain, centrally mediated pain, chronic headache, migraine headache, sinus headache, tension headache, phantom limb pain, peripheral nerve injury, trigeminal neuralgia, post herpetic neuralgia, eudynia, familial erythromelalgia, primary erythromelalgia, familial rectal pain or fibromyalgia, and combinations thereof.
Another embodiment of this embodiment is a method wherein the pain is associated with a disease or condition selected from HIV, HIV treatment induced neuropathy, heat sensitivity, tosarcoidosis, irritable bowel syndrome, Crohns disease, multiple sclerosis, amyotrophic lateral sclerosis, diabetic neuropathy, peripheral neuropathy, rheumatoid arthritis, osteoarthritis, atherosclerosis, paroxysmal dystonia, myasthenia syndromes, myotonia, malignant hyperthermia, cystic fibrosis, pseudoaldosteronism, rhabdomyolysis, hypothyroidism, bipolar depression, anxiety, schizophrenia, sodium channel toxin related illnesses, neurogenic bladder, ulcerative colitis, cancer, epilepsy, partial and general tonic seizures, restless leg syndrome, arrhythmias, ischaemic conditions caused by stroke or neural trauma, tachy arrhythmias, atrial fibrillation and ventricular fibrillation.
Another embodiment of the invention is the method of treating pain in a mammal, preferably a human, by the inhibition of ion flux through a voltage dependent sodium channel in the mammal, wherein the method comprises administering to the mammal in need thereof a therapeutically effective amount of an embodiment of a compound of the invention, as set forth above, as a stereoisomer, enantiomer or tautomer thereof or mixtures thereof, or a pharmaceutically acceptable salt, solvate or prodrug thereof, or a pharmaceutical composition comprising a therapeutically effective amount of a compound of the invention, as set forth above, as a stereoisomer, enantiomer or tautomer thereof or mixtures thereof, or a pharmaceutically acceptable salt, solvate or prodrug thereof, and a pharmaceutically acceptable excipient.
Another embodiment of the invention is the method of treating pruritus in a mammal, preferably a human, wherein the method comprises administering to the mammal in need thereof a therapeutically effective amount of an embodiment of a compound of the invention, as set forth above, as a stereoisomer, enantiomer or tautomer thereof or mixtures thereof, or a pharmaceutically acceptable salt, solvate or prodrug thereof, or a pharmaceutical composition comprising a therapeutically effective amount of a compound of the invention, as set forth above, as a stereoisomer, enantiomer or tautomer thereof or mixtures thereof, or a pharmaceutically acceptable salt, solvate or prodrug thereof, and a pharmaceutically acceptable excipient.
Another embodiment of the invention is the method of treating cancer in a mammal, preferably a human, wherein the method comprises administering to the mammal in need thereof a therapeutically effective amount of an embodiment of a compound of the invention, as set forth above, as a stereoisomer, enantiomer or tautomer thereof or mixtures thereof, or a pharmaceutically acceptable salt, solvate or prodrug thereof, or a pharmaceutical composition comprising a therapeutically effective amount of a compound of the invention, as set forth above, as a stereoisomer, enantiomer or tautomer thereof or mixtures thereof, or a pharmaceutically acceptable salt, solvate or prodrug thereof, and a pharmaceutically acceptable excipient.
Another embodiment of the invention is the method of decreasing ion flux through a voltage dependent sodium channel in a cell in a mammal, wherein the method comprises contacting the cell with an embodiment of a compound of the invention, as set forth above, as a stereoisomer, enantiomer or tautomer thereof or mixtures thereof, or a pharmaceutically acceptable salt, solvate or prodrug thereof.
Another embodiment of the invention is the method of selectively inhibiting a first voltage-gated sodium channel over a second voltage-gated sodium channel in a mammal, wherein the method comprises administering to the mammal an inhibitory amount of a compound of formula (I), or an embodiment of a compound of formula (I).
Another embodiment of the invention is the method of selectively inhibiting NaV1.7 in a mammal or a mammalian cell as compared to NaV1.5, wherein the method comprises administering to the mammal in need thereof an inhibitory amount of a compound of formula (I) or an embodiment of an embodiment thereof.
For each of the above embodiments described related to treating diseases and conditions in a mammal, the present invention also contemplates relatedly a compound as described herein for the use as a medicament in the treatment of such diseases and conditions.
For each of the above embodiments described related to treating diseases and conditions in a mammal, the present invention also contemplates relatedly the use of a compound o as described herein for the manufacture of a medicament for the treatment of such diseases and conditions.
Another embodiment of the invention is a method of using a compound as described herein as a standard or control in in vitro or in vivo assays in determining the efficacy of test compounds in modulating voltage-dependent sodium channels.
In another embodiment of the invention, the compounds as described herein are isotopically-labeled by having one or more atoms therein replaced by an atom having a different atomic mass or mass number. Such isotopically-labeled (i.e., radiolabelled) compounds are considered to be within the scope of this invention. Examples of isotopes that can be incorporated into the compounds include isotopes of hydrogen, carbon, nitrogen, oxygen, phosphorous, sulfur, fluorine, chlorine, and iodine, such as, but not limited to, 2H, 3H, 11C, 13C, 14C, 13N, 15N, 15O, 17O, 18O, 31P, 32F, 35S, 18F, 36Cl, 123I, and 125I, respectively. These isotopically-labeled compounds would be useful to help determine or measure the effectiveness of the compounds, by characterizing, for example, the site or mode of action on the sodium channels, or binding affinity to pharmacologically important site of action on the sodium channels, particularly NaV1.7. Certain isotopically-labeled compounds, for example, those incorporating a radioactive isotope, are useful in drug and/or substrate tissue distribution studies. The radioactive isotopes tritium, i.e. 3H, and carbon-14, i.e., 14C, are particularly useful for this purpose in view of their ease of incorporation and ready means of detection.
Substitution with heavier isotopes such as deuterium, i.e. 2H, may afford certain therapeutic advantages resulting from greater metabolic stability, for example, increased in vivo half-life or reduced dosage requirements, and hence may be preferred in some circumstances.
Substitution with positron emitting isotopes, such as 11C, 18F, 15O and 13N, can be useful in Positron Emission Topography (PET) studies for examining substrate receptor occupancy. Isotopically-labeled compounds can generally be prepared by conventional techniques known to those skilled in the art or by processes analogous to those described in the Examples as set out below using an appropriate isotopically-labeled reagent in place of the non-labeled reagent previously employed.
The assessment of the compounds of the invention in mediating, especially inhibiting, the sodium channel ion flux can be determined using the assays described hereinbelow. Alternatively, the assessment of the compounds in treating conditions and diseases in humans may be established in industry standard animal models for demonstrating the efficacy of compounds in treating pain. Animal models of human neuropathic pain conditions have been developed that result in reproducible sensory deficits (allodynia, hyperalgesia, and spontaneous pain) over a sustained period of time that can be evaluated by sensory testing. By establishing the degree of mechanical, chemical, and temperature induced allodynia and hyperalgesia present, several physiopathological conditions observed in humans can be modeled allowing the evaluation of pharmacotherapies.
In rat models of peripheral nerve injury, ectopic activity in the injured nerve corresponds to the behavioural signs of pain. In these models, intravenous application of the sodium channel blocker and local anesthetic lidocaine can suppress the ectopic activity and reverse the tactile allodynia at concentrations that do not affect general behaviour and motor function (Mao, J. and Chen, L. L, Pain (2000), 87:7-17). Allometric scaling of the doses effective in these rat models, translates into doses similar to those shown to be efficacious in humans (Tanelian, D. L. and Brose, W. G., Anesthesiology (1991), 74(5):949-951). Furthermore, Lidoderm®, lidocaine applied in the form of a dermal patch, is currently an FDA approved treatment for post-herpetic neuralgia (Devers, A. and Glaler, B. S., Clin. J. Pain (2000), 16(3):205-8).
The present invention readily affords many different means for identification of sodium channel modulating agents that are useful as therapeutic agents. Identification of modulators of sodium channel can be assessed using a variety of in vitro and in vivo assays, e.g., measuring current, measuring membrane potential, measuring ion flux, (e.g., sodium or guanidinium), measuring sodium concentration, measuring second messengers and transcription levels, and using e.g., voltage-sensitive dyes, radioactive tracers, and patch-clamp electrophysiology.
One such protocol involves the screening of chemical agents for ability to modulate the activity of a sodium channel thereby identifying it as a modulating agent.
A typical assay described in Bean et al., J. General Physiology (1983), 83:613-642, and Leuwer, M., et al., Br. J. Pharmacol (2004), 141(1):47-54, uses patch-clamp techniques to study the behaviour of channels. Such techniques are known to those skilled in the art, and may be developed, using current technologies, into low or medium throughput assays for evaluating compounds for their ability to modulate sodium channel behaviour.
Throughput of test compounds is an important consideration in the choice of screening assay to be used. In some strategies, where hundreds of thousands of compounds are to be tested, it is not desirable to use low throughput means. In other cases, however, low throughput is satisfactory to identify important differences between a limited number of compounds. Often it will be necessary to combine assay types to identify specific sodium channel modulating compounds.
Electrophysiological assays using patch clamp techniques is accepted as a gold standard for detailed characterization of sodium channel compound interactions, and as described in Bean et al., op. cit. and Leuwer, M., et al., op. cit. There is a manual low-throughput screening (LTS) method which can compare 2-10 compounds per day; a recently developed system for automated medium-throughput screening (MTS) at 20-50 patches (i.e. compounds) per day; and a technology from Molecular Devices Corporation (Sunnyvale, Calif.) which permits automated high-throughput screening (HTS) at 1000-3000 patches (i.e. compounds) per day.
One automated patch-clamp system utilizes planar electrode technology to accelerate the rate of drug discovery. Planar electrodes are capable of achieving high-resistance, cells-attached seals followed by stable, low-noise whole-cell recordings that are comparable to conventional recordings. A suitable instrument is the PatchXpress 7000A (Axon Instruments Inc, Union City, Calif.). A variety of cell lines and culture techniques, which include adherent cells as well as cells growing spontaneously in suspension are ranked for seal success rate and stability. Immortalized cells (e.g. HEK and CHO) stably expressing high levels of the relevant sodium ion channel can be adapted into high-density suspension cultures.
Other assays can be selected which allow the investigator to identify compounds which block specific states of the channel, such as the open state, closed state or the resting state, or which block transition from open to closed, closed to resting or resting to open. Those skilled in the art are generally familiar with such assays.
Binding assays are also available. Designs include traditional radioactive filter based binding assays or the confocal based fluorescent system available from Evotec OAI group of companies (Hamburg, Germany), both of which are HTS.
Radioactive flux assays can also be used. In this assay, channels are stimulated to open with veratridine or aconitine and held in a stabilized open state with a toxin, and channel blockers are identified by their ability to prevent ion influx. The assay can use radioactive 22[Na] and 14[C] guanidinium ions as tracers. FlashPlate & Cytostar-T plates in living cells avoids separation steps and are suitable for HTS. Scintillation plate technology has also advanced this method to FITS suitability. Because of the functional aspects of the assay, the information content is reasonably good.
Yet another format measures the redistribution of membrane potential using the FLIPR system membrane potential kit (HTS) available from Molecular Dynamics (a division of Amersham Biosciences, Piscataway, N.J.). This method is limited to slow membrane potential changes. Some problems may result from the fluorescent background of compounds. Test compounds may also directly influence the fluidity of the cell membrane and lead to an increase in intracellular dye concentrations. Still, because of the functional aspects of the assay, the information content is reasonably good.
Sodium dyes can be used to measure the rate or amount of sodium ion influx through a channel. This type of assay provides a very high information content regarding potential channel blockers. The assay is functional and would measure Na+ influx directly. CoroNa Red, SBFI and/or sodium green (Molecular Probes, Inc. Eugene Oreg.) can be used to measure Na influx; all are Na responsive dyes. They can be used in combination with the FLIPR instrument. The use of these dyes in a screen has not been previously described in the literature. Calcium dyes may also have potential in this format.
In another assay, FRET based voltage sensors are used to measure the ability of a test compound to directly block Na influx. Commercially available HTS systems include the VIPR™ II FRET system (Life Technologies, or Aurora Biosciences Corporation, San Diego, Calif., a division of Vertex Pharmaceuticals, Inc.) which may be used in conjunction with FRET dyes, also available from Aurora Biosciences. This assay measures sub-second responses to voltage changes. There is no requirement for a modifier of channel function. The assay measures depolarization and hyperpolarizations, and provides ratiometric outputs for quantification. A somewhat less expensive MTS version of this assay employs the FLEXstation™ (Molecular Devices Corporation) in conjunction with FRET dyes from Aurora Biosciences. Other methods of testing the compounds disclosed herein are also readily known and available to those skilled in the art.
Modulating agents so identified are then tested in a variety of in vivo models so as to determine if they alleviate pain, especially chronic pain or other conditions such as cancer and pruritus (itch) with minimal adverse events. The assays described below in the Biological Assays Section are useful in assessing the biological activity of the instant compounds.
Typically, the efficacy of a compound of the invention is expressed by its IC50 value (“Inhibitory Concentration—50%”), which is the measure of the amount of compound required to achieve 50% inhibition of the activity of the target sodium channel over a specific time period. For example, representative compounds of the present invention have demonstrated IC50's ranging from less than 100 nanomolar to less than 10 micromolar in the patch voltage clamp NaV1.7 electrophysiology assay described herein.
In another aspect of the invention, the compounds of the invention can be used in in vitro or in vivo studies as exemplary agents for comparative purposes to find other compounds also useful in treatment of, or protection from, the various diseases disclosed herein.
Another aspect of the invention relates to inhibiting NaV1.1, NaV1.2, NaV1.3, NaV1.4, NaV1.5, NaV1.6, NaV1.7, NaV1.8, or NaV1.9 activity, preferably NaV1.7 activity, in a biological sample or a mammal, preferably a human, which method comprises administering to the mammal, preferably a human, or contacting said biological sample with a compound as described herein or a pharmaceutical composition comprising a compound as described herein. The term “biological sample”, as used herein, includes, without limitation, cell cultures or extracts thereof; biopsied material obtained from a mammal or extracts thereof; and blood, saliva, urine, feces, semen, tears, or other body fluids or extracts thereof.
Inhibition of NaV1.1, NaV1.2, NaV1.3, NaV1.4, NaV1.5, NaV1.6, NaV1.7, NaV1.8, or NaV1.9 activity in a biological sample is useful for a variety of purposes that are known to one of skill in the art. Examples of such purposes include, but are not limited to, the study of sodium ion channels in biological and pathological phenomena; and the comparative evaluation of new sodium ion channel inhibitors.
The compounds of the invention (or stereoisomers, geometric isomers, tautomers, solvates, metabolites, isotopes, pharmaceutically acceptable salts, or prodrugs thereof) and/or the pharmaceutical compositions described herein which comprise a pharmaceutically acceptable excipient and one or more compounds of the invention, can be used in the preparation of a medicament for the treatment of sodium channel-mediated disease or condition in a mammal.
The compounds of the invention may be usefully combined with one or more other compounds of the invention or one or more other therapeutic agent or as any combination thereof, in the treatment of sodium channel-mediated diseases and conditions. For example, a compound of the invention may be administered simultaneously, sequentially or separately in combination with other therapeutic agents, including, but not limited to:
opiates analgesics, e.g., morphine, heroin, cocaine, oxymorphine, levorphanol, levallorphan, oxycodone, codeine, dihydrocodeine, propoxyphene, nalmefene, fentanyl, hydrocodone, hydromorphone, meripidine, methadone, nalorphine, naloxone, naltrexone, buprenorphine, butorphanol, nalbuphine and pentazocine;
non-opiate analgesics, e.g., acetomeniphen, salicylates (e.g., aspirin);
nonsteroidal antiinflammatory drugs (NSAIDs), e.g., ibuprofen, naproxen, fenoprofen, ketoprofen, celecoxib, diclofenac, diflusinal, etodolac, fenbufen, fenoprofen, flufenisal, flurbiprofen, ibuprofen, indomethacin, ketoprofen, ketorolac, meclofenamic acid, mefenamic acid, meloxicam, nabumetone, naproxen, nimesulide, nitroflurbiprofen, olsalazine, oxaprozin, phenylbutazone, piroxicam, sulfasalazine, sulindac, tolmetin and zomepirac;
anticonvulsants, e.g., carbamazepine, oxcarbazepine, lamotrigine, valproate, topiramate, gabapentin and pregabalin;
antidepressants such as tricyclic antidepressants, e.g., amitriptyline, clomipramine, despramine, imipramine and nortriptyline;
COX-2 selective inhibitors, e.g., celecoxib, rofecoxib, parecoxib, valdecoxib, deracoxib, etoricoxib, and lumiracoxib;
alpha-adrenergics, e.g., doxazosin, tamsulosin, clonidine, guanfacine, dexmetatomidine, modafinil, and 4-amino-6,7-dimethoxy-2-(5-methane sulfonamido-1,2,3,4-tetrahydroisoquinol-2-yl)-5-(2-pyridyl) quinazoline;
barbiturate sedatives, e.g., amobarbital, aprobarbital, butabarbital, butabital, mephobarbital, metharbital, methohexital, pentobarbital, phenobartital, secobarbital, talbutal, theamylal and thiopental;
tachykinin (NK) antagonist, particularly an NK-3, NK-2 or NK-1 antagonist, e.g., (αR, 9R)-7-[3,5-bis(trifluoromethyl)benzyl)]-8,9,10,11-tetrahydro-9-methyl-5-(4-methylphenyl)-7H-[1,4]diazocino[2,1-g][1,7]-naphthyridine-6-13-dione (TAK-637), 5-[[2R,3S)-2-[(1R)-1-[3,5-bis(trifluoromethylphenyl]ethoxy-3-(4-fluorophenyl)-4-morpholinyl]-methyl]-1,2-dihydro-3H-1,2,4-triazol-3-one (MK-869), aprepitant, lanepitant, dapitant or 3-[[2-methoxy5-(trifluoromethoxy)phenyl]-methylamino]-2-phenylpiperidine (2S,3S);
coal-tar analgesics, in particular paracetamol;
serotonin reuptake inhibitors, e.g., paroxetine, sertraline, norfluoxetine (fluoxetine desmethyl metabolite), metabolite demethylsertraline, ′3 fluvoxamine, paroxetine, citalopram, citalopram metabolite desmethylcitalopram, escitalopram, d,l-fenfluramine, femoxetine, ifoxetine, cyanodothiepin, litoxetine, dapoxetine, nefazodone, cericlamine, trazodone and fluoxetine;
noradrenaline (norepinephrine) reuptake inhibitors, e.g., maprotiline, lofepramine, mirtazepine, oxaprotiline, fezolamine, tomoxetine, mianserin, buproprion, buproprion metabolite hydroxybuproprion, nomifensine and viloxazine (Vivalan®)), especially a selective noradrenaline reuptake inhibitor such as reboxetine, in particular (S,S)-reboxetine, and venlafaxine duloxetine neuroleptics sedative/anxiolytics;
dual serotonin-noradrenaline reuptake inhibitors, such as venlafaxine, venlafaxine metabolite 0-desmethylvenlafaxine, clomipramine, clomipramine metabolite desmethylclomipramine, duloxetine, milnacipran and imipramine;
acetylcholinesterase inhibitors such as donepezil;
5-HT3 antagonists such as ondansetron;
metabotropic glutamate receptor (mGluR) antagonists;
local anaesthetic such as mexiletine and lidocaine;
corticosteroid such as dexamethasone;
antiarrhythimics, e.g., mexiletine and phenytoin;
muscarinic antagonists, e.g., tolterodine, propiverine, tropsium t chloride, darifenacin, solifenacin, temiverine and ipratropium;
cannabinoids;
vanilloid receptor agonists (e.g., resinferatoxin) or antagonists (e.g., capsazepine);
sedatives, e.g., glutethimide, meprobamate, methaqualone, and dichloralphenazone;
anxiolytics such as benzodiazepines,
antidepressants such as mirtazapine,
topical agents (e.g., lidocaine, capsacin and resiniferotoxin);
muscle relaxants such as benzodiazepines, baclofen, carisoprodol, chlorzoxazone, cyclobenzaprine, methocarbamol and orphrenadine;
anti-histamines or H1 antagonists;
NMDA receptor antagonists;
5-HT receptor agonists/antagonists;
PDEV inhibitors;
Tramadol®;
cholinergic (nicotine) analgesics;
alpha-2-delta ligands;
prostaglandin E2 subtype antagonists;
leukotriene B4 antagonists;
5-lipoxygenase inhibitors; and
5-HT3 antagonists.
Sodium channel-mediated diseases and conditions that may be treated and/or prevented using such combinations include but not limited to, pain, central and peripherally mediated, acute, chronic, neuropathic as well as other diseases with associated pain and other central nervous disorders such as epilepsy, anxiety, depression and bipolar disease; or cardiovascular disorders such as arrhythmias, atrial fibrillation and ventricular fibrillation; neuromuscular disorders such as restless leg syndrome and muscle paralysis or tetanus; neuroprotection against stroke, neural trauma and multiple sclerosis; and channelopathies such as erythromyalgia and familial rectal pain syndrome.
As used herein “combination” refers to any mixture or permutation of one or more compounds of the invention and one or more other compounds of the invention or one or more additional therapeutic agent. Unless the context makes clear otherwise, “combination” may include simultaneous or sequentially delivery of a compound of the invention with one or more therapeutic agents. Unless the context makes clear otherwise, “combination” may include dosage forms of a compound of the invention with another therapeutic agent. Unless the context makes clear otherwise, “combination” may include routes of administration of a compound of the invention with another therapeutic agent. Unless the context makes clear otherwise, “combination” may include formulations of a compound of the invention with another therapeutic agent. Dosage forms, routes of administration and pharmaceutical compositions include, but are not limited to, those described herein.
The invention will be more fully understood by reference to the following examples. They should not, however, be construed as limiting the scope of the invention.
These examples serve to provide guidance to a skilled artisan to prepare and use the compounds, compositions and methods of the invention. While a particular embodiment of the present invention are described, the skilled artisan will appreciate that various changes and modifications can be made without departing from the spirit and scope of the inventions.
The chemical reactions in the examples described can be readily adapted to prepare a number of other compounds of the invention, and alternative methods for preparing the compounds of this invention are deemed to be within the scope of this invention. For example, the synthesis of non-exemplified compounds according to the invention can be successfully performed by modifications apparent to those skilled in the art, for example, by appropriately protecting interfering groups by utilizing other suitable reagents known in the art other than those described, and/or by making routine modifications of reaction conditions.
In the examples below, unless otherwise indicated all temperatures are set forth in degrees Celsius. Commercially available reagents were purchased from suppliers such as Aldrich Chemical Company, Lancaster, TCI or Maybridge and were used without further purification unless otherwise indicated. The reactions set forth below were done under a positive pressure of nitrogen or argon or with a drying tube (unless otherwise stated) in anhydrous solvents, and the reaction flasks were typically fitted with rubber septa for the introduction of substrates and reagents via syringe. Glassware was oven dried and/or heat dried. 1H NMR spectra were obtained in deuterated CDCl3, d6-DMSO, CH3OD or d6-acetone solvent solutions (reported in ppm) using or trimethylsilane (TMS) or residual non-deuterated solvent peaks as the reference standard. When peak multiplicities are reported, the following abbreviates are used: s (singlet), d (doublet), t (triplet), q (quartet), m (multiplet), br (broad), dd (doublet of doublets), dt (doublet of triplets). Coupling constants, when given, are reported in Hz (Hertz).
All abbreviations used to describe reagents, reaction conditions or equipment are intended to be consistent with the definitions set forth in the “List of standard abbreviates and acronyms”. The chemical names of discrete compounds of the invention were obtained using the structure naming feature of ChemDraw naming program.
EtOAc Ethyl acetate
DMAP 4-dimethylaminopyridine
DMSO Dimethyl sulfoxide
FA Formic acid
IPA Isopropyl alcohol
TFA Trifluoroacetic acid
EDCI 1-Ethyl-3-(3-dimethylaminopropyl)carbodiimide hydrochloride
HCl Hydrochloric acid
NMP N-methyl-2-pyrrolidone
RPHPLC Reverse phase high pressure liquid chromatography
RT Retention time
To a solution of (2S)-2-aminopent-4-enoic acid (40.0 g, 347.43 mmol) in 1,4-dioxane (400 mL) at 0° C. was added NaOH (31.96 g, 799.1 mmol) in water (800 mL) and di-tert-butyl dicarbonate (91 g, 416.92 mmol) slowly. The reaction mixture was stirred at room temperature for 16 h. The reaction was concentrated in vacuo to get rid of dioxane. The aqueous phase was washed with EtOAc (600 mL×3). The aqueous phase was acidified to pH 2 with 2 M aq. H2SO4 and extracted with EtOAc (600 mL×3). The combined organic layers were washed with brine (600 mL), dried over anhydrous MgSO4, filtered and concentrated in vacuo to give the title compound (63.6 g, crude) as colorless oil that required no further purification. 1H NMR (400 MHz, DMSO-d6) δ 12.40 (s, 1H), 7.04 (d, J=8.0 Hz, 1H), 5.83-5.68 (m, 1H), 5.14-4.96 (m, 2H), 3.97-3.87 (m, 1H), 2.48-2.23 (m, 2H), 1.37 (s, 9H).
To a solution of (S)-2-((tert-butoxycarbonyl)amino)pent-4-enoic acid (25.0 g, 116.14 mmol) in THF (500 mL) at 0° C. was added triethylamine (32.4 mL, 232.29 mmol) and methanesulfonyl chloride (26.61 g, 232.29 mmol). The mixture was stirred at 0° C. for 2 h and filtered. The filtrate was added (trimethylsilyl)diazomethane (174.22 mL, 348.43 mmol, 2 M in hexane) at 0° C. slowly. The mixture was stirred at 0° C. for an additional 2 h. The mixture was quenched with water (100 mL) slowly at 0° C. and extracted with EtOAc (250 mL×2). The combined organic layers were washed with brine (150 mL×2), dried over anhydrous Na2SO4, filtered and concentrated in vacuo. The crude residue was purified by silica gel chromatography (petroleum ether/EtOAc=10:1) to give the title compound (3.9 g, 14%) as light yellow oil. 1H NMR (400 MHz, CDCl3) δ 5.79-5.66 (m, 1H), 5.47 (s, 1H), 5.21-5.12 (m, 2H), 5.08 (s, 1H), 4.31-4.18 (m, 1H), 2.59-2.48 (m, 1H), 2.47-2.36 (m, 1H), 1.45 (s, 9H).
To a solution of (S)-tert-butyl (1-diazo-2-oxohex-5-en-3-yl)carbamate (15.3 g, 63.94 mmol) in 1,4-dioxane (180 mL) and water (20 mL) was added silver(I) oxide (1.48 g, 6.39 mmol). The mixture was sonicated in an ultrasound bath at room temperature for 1 h. The mixture was concentrated in vacuo. Water (200 mL) was added and the mixture was basified with solid NaHCO3 to pH 8 and then extracted with EtOAc (100 mL×2). The aqueous layer was acidified with 4 M aq. HCl to pH 2 and extracted with EtOAc (100 mL×3). The combined organic layers were washed with brine (50 mL), dried over anhydrous Na2SO4, filtered and concentrated in vacuo to give the title compound (9.1 g, crude) as light yellow oil that required no further purification. 1H NMR (400 MHz, CDCl3) δ 5.85-5.65 (m, 1H), 5.18-5.06 (m, 2H), 5.05-4.86 (m, 1H), 4.09-3.85 (m, 1H), 2.65-2.50 (m, 2H), 2.39-2.28 (m, 2H), 1.45 (s, 9H).
To a solution of (S)-3-((tert-butoxycarbonyl)amino)hex-5-enoic acid (9.1 g, 39.69 mmol) in toluene (80 mL) was added formaldehyde (5.96 g, 198.46 mmol) and (1S)-(+)-10-camphorsulfonic acid (1.84 g, 7.94 mmol) and 4A molecular sieve (13 g). The mixture was heated to 90° C. for 6 h under nitrogen atmosphere. After cooling to room temperature, the mixture was filtered and concentrated in vacuo. EtOAc (100 mL) was added and washed with sat. aq. NaHCO3 (50 mL) and brine (50 mL), dried over anhydrous Na2SO4, filtered and concentrated in vacuo. The crude residue was purified by silica gel chromatography (petroleum ether/EtOAc=5:1) to give the title compound (6.9 g, 72%) as light yellow oil. 1H NMR (400 MHz, CDCl3) δ 5.95-5.65 (m, 2H), 5.24-5.09 (m, 2H), 4.93 (d, J=10.8 Hz, 1H), 4.30-4.08 (m, 1H), 2.83-2.70 (m, 1H), 2.62-2.53 (m, 1H), 2.49-2.34 (m, 2H), 1.50 (s, 9H).
A solution of N-(2,4-dimethoxybenzyl)pyrimidin-4-amine (5 g, 20.4 mmol), 5-bromo-2,4-difluorobenzene-1-sulfonyl chloride (8.91 g, 30.6 mmol) and 1,4-diazabicyclo[2.2.2]octane (3.43 g, 30.6 mmol) in MeCN (135 mL) was stirred at room temperature for 5 hours. The mixture was filtered to remove the resulting white solids, and then concentrated in vacuo. The crude material was purified by flash column chromatography through Si gel (EtOAc/DCM) to provide 5-bromo-N-(2,4-dimethoxybenzyl)-2,4-difluoro-N-(pyrimidin-4-yl)benzenesulfonamide (8.24 g, 81% yield) as a pale yellow solid. LCMS (ESI) m/z: 501.9 [M+H]+. 1H NMR (400 MHz, CDCl3) δ 8.79 (d, J=0.9 Hz, 1H), 8.48 (d, J=5.9 Hz, 1H), 8.27 (t, J=7.3 Hz, 1H), 7.21 (d, J=8.8 Hz, 1H), 7.15 (dd, J=5.9, 1.3 Hz, 1H), 6.96 (dd, J=9.5, 7.9 Hz, 1H), 6.46-6.38 (m, 2H), 5.23 (s, 2H), 3.79 (s, 3H), 3.78 (s, 3H).
Methyltriphenylphosphonium bromide (17.1 g, 47.8 mmol) was added to an oven dried flask, and THF (64 mL) was added. The suspension was cooled to 0° C. and potassium tert-butoxide (5.37 g, 47.8 mmol) was added. The resulting yellow suspension was stirred at 0° C. for 45 min. To the suspension was then added a solution of 3′-(trifluoromethyl)acetophenone (6.07 mL, 39.9 mmol) in THF (32 mL) dropwise. The resulting mixture was warmed to rt slowly and stirred at rt for 16 h. The reaction mixture was then diluted with hexanes (200 mL) and stirred for 20 min and the resulting precipitate was filtered. The filtrate was concentrated in vacuo then a further portion of hexanes (200 mL) was added and stirred for 20 min. The resulting precipitate was filtered through celite and the filtrate was concentrated in vacuo to provide crude 1-(prop-1-en-2-yl)-3-(trifluoromethyl)benzene (6.3 g, 85% yield), which was used without further purification. 1H NMR (400 MHz, CDCl3) 7.71-7.69 (m, 1H), 7.64 (d, J=7.8 Hz, 1H), 7.52 (d, J=7.8 Hz, 1H), 7.44 (t, J=7.7 Hz, 1H), 5.43 (s, 1H), 5.26-5.08 (m, 1H), 2.18 (dd, J=1.4, 0.8 Hz, 3H).
Iodine (5.45 g, 21.5 mmol) was dissolved in DMA (25 mL) and to this solution was added 1-isopropenyl-3-(trifluoromethyl)benzene (18.6 mL, 5.4 mmol) in one portion. The reaction mixture is stirred at rt for 20 min then the mixture was poured into an aqueous solution of sodium bisulfite (6 g in 50 mL water). The product was extracted with EtOAc (50 mL) and the organic layer was washed with H2O (30 mL×3), then with brine (30 mL). The organic phase was dried (Na2SO4), filtered, and concentrated in vacuo to provide 1-(3-iodoprop-1-en-2-yl)-3-(trifluoromethyl)benzene (1.1 g, 65% yield), which was used without further purification. 1H NMR (400 MHz, CDCl3) 7.71 (d, J=10.1 Hz, 1H), 7.65-7.56 (m, 2H), 7.51 (d, J=7.7 Hz, 1H), 5.62 (s, 1H), 5.52 (s, 1H), 4.32 (s, 2H).
A solution of tert-butyl (4S)-4-allyl-6-oxo-1,3-oxazinane-3-carboxylate (15.0 g, 62.2 mmol) in THF (300 mL) was cooled to −78° C. under N2. KHMDS (0.5 M in toluene, 124 mL, 62.0 mmol) was then added dropwise to the solution and the mixture was left to stir at −78° C. for 30 min. 1-(3-iodoprop-1-en-2-yl)-3-(trifluoromethyl)benzene (18.3 g, 49.7 mmol) was then added at once quickly and the stirring was continued for 5 h at −78° C. The reaction was quenched by addition of saturated NH4Cl (100 mL) at −78° C. and then diluted with H2O (10 mL) and ethyl acetate (300 mL). The organic layer was separated and washed with brine (100 mL), dried (Na2SO4), and concentrated in vacuo. The crude material thus obtained was purified by flash column chromatography through Si gel (0-40% EtOAc/hexanes) to provide (4S,5S)-tert-butyl 4-allyl-6-oxo-5-(2-(3-(trifluoromethyl)phenyl)allyl)-1,3-oxazinane-3-carboxylate (12.0 g, 45% yield). LCMS (ESI) m/z: 326.1 [M-Boc+H]+.
(4S,5S)-tert-Butyl 4-allyl-6-oxo-5-(2-(3-(trifluoromethyl)phenyl)allyl)-1,3-oxazinane-3-carboxylate (10.0 g, 23.5 mmol) was dissolved in toluene (400 mL) and sparged with N2 for 20 min. To this solution was then added Grubbs catalyst 2nd generation (499 mg, 0.59 mmol) and the reaction mixture was stirred at 70° C. After 5 h, the mixture was cooled to rt and purified directly by flash column chromatography through Si gel (0-40% EtOAc/hexanes) to provide (4aS,8aS)-tert-butyl 4-oxo-6-(3-(trifluoromethyl)phenyl)-2,4,4a,5,8,8a-hexahydro-1H-benzo[d][1,3]oxazine-1-carboxylate (7.1 g, 76% yield). LCMS (ESI) m/z: 298.1 [M-Boc+H]+
(4aS,8aS)-tert-Butyl 4-oxo-6-(3-(trifluoromethyl)phenyl)-2,4,4a,5,8,8a-hexahydro-1H-benzo[d][1,3]oxazine-1-carboxylate (6.9 g, 17.4 mmol) was dissolved in EtOAc (30 mL) and to this solution was added Pd/C (10% w/w, 1.4 g). The reaction mixture was stirred under H2 (1 atm) at 25° C. for 1 h until completion. The crude was filtered through celite and the filtrate was concentrated in vacuo to provide ((4aS,6S, 8aS)-tert-butyl 4-oxo-6-(3-(trifluoromethyl)phenyl)octahydro-1H-benzo[d][1,3]oxazine-1-carboxylate (6.4 g, 92% yield) which was used directly in the next step without further purification. LCMS (ESI) m/z: 300.1 [M-Boc+H]+.
((4aS,6S, 8aS)-tert-butyl 4-oxo-6-(3-(trifluoromethyl)phenyl)octahydro-1H-benzo[d][1,3]oxazine-1-carboxylate (6.4 g, 16.1 mmol) was dissolved in THF (20 mL) and to this solution was added lithium hydroxide monohydrate (1.68 g, 40.2 mmol) in water (15 mL). The reaction mixture was stirred at 25° C. for 4 h then carefully acidified with HCl (6 M in water) to pH=3. The reaction was diluted with EtOAc (100 mL) and water (20 mL). The organic layer was separated and washed with brine (50 mL), dried over Na2SO4 and concentrated to afford (1S,2S,5S)-2-((tert-butoxycarbonyl)amino)-5-(3-(trifluoromethyl)phenyl)cyclohexanecarboxylic acid (5.7 g, 91% yield). LCMS (ESI) m/z: 386.1 [M−H]−.
(1S,2S,5)-2-((tert-butoxycarbonyl)amino)-5-(3-(trifluoromethyl)phenyl)cyclohexanecarboxylic acid (5.67 g, 14.6 mmol) was dissolved in toluene (30 mL) and to the solution was added DIPEA (3.9 mL, 22.0 mmol) and diphenylphosphoryl azide (3.79 mL, 17.6 mmol). The mixture was heated to 100° C. After 80 min, the mixture was cooled to rt then purified directly by flash column chromatography through Si gel (30-100% EtOAc/hexanes) to provide tert-butyl ((1S,2S,4S)-2-isocyanato-4-(3-(trifluoromethyl)-phenyl)cyclohexyl)carbamate (3.98 g, 70% yield). LCMS (ESI) m/z: 407.2 [M+Na]+.
tert-Butyl ((1S,2S,4S)-2-isocyanato-4-(3-(trifluoromethyl)phenyl)cyclohexyl)carbamate (5.67 g, 14.6 mmol) was dissolved in THF (15 mL) and to this solution was added potassium trimethylsilanolate (1.6 g, 12.4 mmol) in THF (10 mL). The mixture was stirred at 25° C. for 20 min until completion. The reaction was then quenched with saturated NaHCO3 (5 mL) and diluted with EtOAc (20 mL). The organic layer was separated, dried (Na2SO4), filtered concentrated in vacuo. The crude material thus obtained was purified by flash column chromatography through Si gel (0-10% MeOH/DCM) to provide tert-butyl ((1S,2S,4S)-2-amino-4-(3-(trifluoromethyl)-phenyl)cyclohexyl)carbamate (3.1 g, 83% yield). LCMS (ESI) m/z: 359.2 [M+H]+.
tert-Butyl ((1S,2S,4S)-2-amino-4-(3-(trifluoromethyl)phenyl)cyclohexyl)carbamate (2.6 g, 7.3 mmol) was dissolved in methanol (15 mL) and to this solution was added formaldehyde (30% w/w in water, 3.6 mL, 108 mmol). To the stirring mixture was then added sodium cyanoborohydride (4.5 g, 72.5 mmol). The reaction was stirred at rt for 3 h until complete. The reaction was quenched with saturated NaHCO3(5 mL) and organics extracted with EtOAc (10 mL). The organic layer was then washed with brine (5 mL), dried (Na2SO4), filtered and concentrated in vacuo. The crude material thus obtained was purified by flash column chromatography through Si gel (0-5% MeOH/DCM) to provide tert-butyl ((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)carbamate (2.23 g, 79% yield). LCMS (ESI) m/z: 387.2 [M+H]+.
tert-Butyl ((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)carbamate (2.2 g, 5.7 mmol) was dissolved in 1,4-dioxane (4 mL) and to the mixture was added 4 M HCl in dioxanes (10 mL, 40 mmol). The reaction was stirred at rt for 1 h until complete then diluted with MTBE (100 mL) and quenched with NaOH (1M) until basic. The organic layer was separated, dried (Na2SO4), filtered and concentrated in vacuo to provide crude (1S,2S,5S)—N1,N1-dimethyl-5-(3-(trifluoromethyl)phenyl)cyclohexane-1,2-diamine (1.6 g, 95% yield) which was used directly in the next step without further purification. LCMS (ESI) m/z: 407.2 [M+Na]+.
In a flask containing 5-bromo-N-(2,4-dimethoxybenzyl)-2,4-difluoro-N-(pyrimidin-4-yl)benzenesulfonamide (603 mg, 1.2 mmol) was added DMF (5 mL), (1S,2S,5S)—N1,N1-dimethyl-5-(3-(trifluoromethyl)phenyl)cyclohexane-1,2-diamine (230 mg, 0.80 mmol) and DIPEA (0.43 mL, 2.41 mmol). After overnight stirring at 65° C., the reaction was stopped by quenching with water (10 mL). The product was extracted with EtOAc (30 mL), the organic layer was separated and washed with three times with water then with brine (5 mL). The organic layer was dried (Na2SO4), filtered and concentrated in vacuo. The crude residue was purified by flash column chromatography through Si gel (20-100% EtOAc/hexanes) to provide 5-bromo-N-(2,4-dimethoxybenzyl)-4-(((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)-cyclohexyl)amino)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide (395 mg, 64% yield). LCMS (ESI) m/z: 766.2 [M+H]+.
An oven-dried 10 mL screw-cap test tube (tube A) equipped with a Teflon-coated magnetic stir bar was charged with 2-(di-t-butylphosphino)-3,6-dimethoxy-2′,4′,6′-tri-i-propyl-1,1′-biphenyl (t-butylBrettPhos) (25.3 mg, 0.05 mmol) and 5-bromo-N-(2,4-dimethoxybenzyl)-4-(((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)amino)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide (200 mg, 0.26 mmol). To this, was then added an aqueous solution of CsOH (117 mg, 0.78 mmol CsOH monohydrate in 0.047 mL water) followed by addition of 1,4-dioxane (0.2 mL). This tube was evacuated and backfilled with N2 (3×). Another oven-dried 10 mL screw-cap test tube (tube B) equipped with a Teflon-coated magnetic stir bar was charged with t-BuBrettPhos Pd G3 (44.5 mg, 0.05 mmol) and 1,4-dioxane (1 mL) which was then evacuated and backfilled with N2 (3×). The t-BuBrettPhos Pd G3 solution in tube B was stirred at rt for 1 min to form a homogeneous solution then transferred to tube A. The resulting reaction mixture in tube A was stirred at rt for 3 h until complete. The mixture was diluted with EtOAc (25 mL) and saturated NH4Cl (10 mL). The organic layer was separated and washed with brine, dried (Na2SO4), filtered and concentrated in vacuo. The crude material was purified by flash column chromatography through Si gel (0-20% MeOH/DCM) to provide N-(2,4-dimethoxybenzyl)-4-(((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)amino)-2-fluoro-5-hydroxy-N-(pyrimidin-4-yl)benzenesulfonamide (183 mg, 99% yield). LCMS (ESI) m/z: 704.3 [M+H]+.
In an oven dried flask was added N-(2,4-dimethoxybenzyl)-4-((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)amino)-2-fluoro-5-hydroxy-N-(pyrimidin-4-yl)benzenesulfonamide (65 mg, 0.09 mmol) and THF (0.50 mL). To the solution was then added triethylamine (0.02 mL, 0.13 mmol) followed by (2,5-dioxopyrrolidin-1-yl) 2-hydroxyacetate (21 mg, 0.12 mmol). The reaction is stirred at rt for 10 min then added to a preformed mixture of triphenylphosphine (48 mg, 0.18 mmol) and diisopropyl azodicarboxylate (0.04 mL, 0.18 mmol) in THF (2 mL) previously stirred at rt for 10 min. The combined mixtures were stirred at rt for 2 h then concentrated. The crude material was directly purified by semi-prep HPLC-MS (CSH colunm, 60-80% MeCN/10 mM aqueous Ammonium bicarbonate, pH=10) to provide after lyophilization N-(2,4-dimethoxybenzyl)-4-((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)-6-fluoro-3-oxo-N-(pyrimidin-4-yl)-3,4-dihydro-2H-benzo[b][1,4]oxazine-7-sulfonamide (45 mg, 65% yield). LCMS (ESI) m/z: 744.3 [M+H]+.
In a flask containing N-(2,4-dimethoxybenzyl)-4-((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)-6-fluoro-3-oxo-N-(pyrimidin-4-yl)-3,4-dihydro-2H-benzo[b][1,4]oxazine-7-sulfonamide (65 mg, 0.09 mmol) was added formic acid (1 mL) and the reaction is stirred at 25° C. for 3 h until complete. The mixture was concentrated and the product was purified by C18 reverse phase flash chromatography (0-100% MeCN/10 mM aqueous Ammonium formate) to provide 4-((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)-6-fluoro-3-oxo-N-(pyrimidin-4-yl)-3,4-dihydro-2H-benzo[b][1,4]oxazine-7-sulfonamide (14 mg, 27% yield) after lyophilization. LCMS (ESI) m/z: 594.2 [M+H]+. 1H NMR (400 MHz, d6-DMSO) δ 8.31 (s, 1H), 7.98 (d, J=5.8 Hz, 1H), 7.62 (d, J=14.7 Hz, 2H), 7.54 (s, 2H), 7.32 (dd, J=20.0, 9.2 Hz, 2H), 6.63 (d, J=5.7 Hz, 1H), 4.67-4.45 (m, 2H), 4.02-4.10 (m, 1H), 3.84-3.91 (m, 1H), 2.75-2.80 (m, 1H), 2.30-2.41 (m 1H), 2.10 (s, 6H), 1.88-1.95 (m, 3H), 1.72-1.76 (m 1H), 1.52-1.59 (m, 1H).
To an oven dried flask was charged THF (1 mL) followed by triphenylphosphine (37 mg, 0.14 mmol) and diisopropyl azodicarboxylate (0.03 mL, 0.14 mmol). The mixture was stirred at rt for 5 min then 2-chloroethanol (0.01 mL, 0.14 mmol) was added. The mixture was stirred for 5 min then N-(2,4-dimethoxybenzyl)-4-(((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)-phenyl)cyclohexyl)amino)-2-fluoro-5-hydroxy-N-(pyrimidin-4-yl)benzenesulfonamide (50.0 mg, 0.07 mmol) prepared in Example 1 was added in one portion. The reaction was stirred at rt for 4 h then the solvent was removed in vacuo. The residue was dissolved in DMF (2 mL) and to the solution was added cesium carbonate (116 mg, 0.36 mmol) and the mixture stirred at 90° C. After 1 h, the mixture was cooled to rt, insolubles filtered off and to the filtrate was added ammonium formate until no longer basic (˜200 mg). The mixture was diluted with MeOH (1 mL) and the crude was purified directly by semi-prep HPLC-MS (CSH colunm, 65-85% MeCN/10 mM aqueous ammonium bicarbonate, pH=10) to afford N-(2,4-dimethoxybenzyl)-4-((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)-6-fluoro-N-(pyrimidin-4-yl)-3,4-dihydro-2H-benzo[b][1,4]oxazine-7-sulfonamide (42 mg, 81% yield) after lyophilization. LCMS (ESI) m/z: 730.3 [M+H]+.
Following the procedure described in Example 1 Step s and making non-critical variations as required to replace N-(2,4-dimethoxybenzyl)-4-((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)-6-fluoro-3-oxo-N-(pyrimidin-4-yl)-3,4-dihydro-2H-benzo[b][1,4]oxazine-7-sulfonamide with N-(2,4-dimethoxybenzyl)-4-((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)-6-fluoro-N-(pyrimidin-4-yl)-3,4-dihydro-2H-benzo[b][1,4]oxazine-7-sulfonamide, 4-((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)-6-fluoro-N-(pyrimidin-4-yl)-3,4-dihydro-2H-benzo[b][1,4]oxazine-7-sulfonamide was obtained. LCMS (ESI) m/z: 580.2 [M+H]+. 1H NMR (400 MHz, d6-DMSO) δ 8.53 (s, 1H), 8.24 (d, J=5.7 Hz, 1H), 8.12 (s, 1H), 7.62-7.52 (m, 4H), 7.05 (d, J=7.3 Hz, 1H), 6.88 (dd, J=10.1, 3.6 Hz, 2H), 4.09-4.17 (m, 1H), 4.08-3.91 (m, 2H), 2.91-2.99 (m, 1H), 2.72 (t, J=11.9 Hz, 1H), 2.19 (s, 6H), 1.91-1.97 (m, 1H), 1.85-1.58 (m, 5H).
To a test tube was charged 1,1′-carbonyldiimidazole (13.8 mg, 0.09 mmol) and THF (0.50 mL). To this solution was added N-(2,4-dimethoxybenzyl)-4-(((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)-phenyl)cyclohexyl)amino)-2-fluoro-5-hydroxy-N-(pyrimidin-4-yl)benzenesulfonamide (60 mg, 0.09 mmol) prepared in Example 1. The mixture was stirred at rt for 30 min then the solvent was removed in vacuo. The mixture was dissolved in formic acid (1 mL) and stirred at rt overnight. After 16 h, the crude mixture was concentrated in vacuo and directly purified by C18 reverse phase flash chromatography (0-100% MeCN/10 mM aqueous ammonium formate, pH=3.8). Appropriate fractions combined and lyophilized to provide 3-((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)-5-fluoro-2-oxo-N-(pyrimidin-4-yl)-2,3-dihydrobenzo[d]oxazole-6-sulfonamide formate (38 mg, 71% yield). LCMS (ESI) m/z: 580.1 [M+H]+. 1H NMR (400 MHz, d6-DMSO) δ 8.44 (s, 1H), 8.12 (s, 1H), 8.10 (s, 1H), 7.79-7.52 (m, 7H), 6.81 (s, 1H), 4.28-4.43 (m, 1H), 2.82-3.11 (m, 1H), 2.18 (s, 6H), 1.97-2.07 (m, 2H), 1.92-1.43 (m, 2H).
Following the procedure described in Example 1 Step e and making non-critical variations as required to replace 5-bromo-2,4-difluorobenzene-1-sulfonyl chloride with 5-chloro-2,4-difluorobenzene-1-sulfonyl chloride, 5-chloro-N-(2,4-dimethoxybenzyl)-2,4-difluoro-N-(pyrimidin-4-yl)benzenesulfonamide was obtained. LCMS (ESI) m/z: 456.1 [M+H]+.
Following the procedure described in Example 1 and making non-critical variations as required to replace 1-(3-(trifluoromethyl)phenyl)ethanone with 1-(3,4-dichlorophenyl)ethanone, (1S,2S,5S)-5-(3,4-dichlorophenyl)-N1,N1-dimethylcyclohexane-1,2-diamine was obtained. LCMS (ESI) m/z: 287.1 (M+H)+.
To (1S,2S,5S)-5-(3,4-dichlorophenyl)-N1,N1-dimethylcyclohexane-1,2-diamine (131 mg, 0.46 mmol), in DMF (5.0 mL) was added 5-chloro-N-(2,4-dimethoxybenzyl)-2,4-difluoro-N-(pyrimidin-4-yl)benzenesulfonamide (312 mg, 0.68 mmol) followed by DIPEA (0.33 mL, 1.86 mmol) and the mixture stirred overnight at 65° C. After 16 h, the mixture was cooled to rt and diluted with EtOAc, washed with H2O, then brine, dried (MgSO4), filtered and concentrated in vacuo. The crude residue was purified by flash column chromatography through Si gel (EtOAc/hexanes) to provide 5-chloro-4-(((1S,2S,4S)-4-(3,4-dichlorophenyl)-2-(dimethylamino)cyclohexyl)amino)-N-(2,4-dimethoxybenzyl)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide (175 mg, 53%). LCMS (ESI) m/z: 724.2 (M+H)+.
Following the procedure described in Example 1 Step s and making non-critical variations as required to replace N-(2,4-dimethoxybenzyl)-4-((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)-6-fluoro-3-oxo-N-(pyrimidin-4-yl)-3,4-dihydro-2H-benzo[b][1,4]oxazine-7-sulfonamide with 5-chloro-4-(((1S,2S,4S)-4-(3,4-dichlorophenyl)-2-(dimethylamino)cyclohexyl)amino)-N-(2,4-dimethoxybenzyl)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide (175 mg, 0.24 mmol), 5-chloro-4-(((1S,2S,4S)-4-(3,4-dichlorophenyl)-2-(dimethylamino)cyclohexyl)amino)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide was obtained (68 mg, 50% yield). LCMS (ESI) m/z: 574 (M+H)+. 1H NMR (400 MHz, d6-dmso) δ 8.42 (s, 1H), 8.10 (d, J=6.0 Hz, 1H), 7.67 (d, J=7.4 Hz, 1H), 7.60-7.57 (m, 2H), 7.31 (dd, J=8.4, 2.0 Hz, 1H), 6.78 (d, J=13.0 Hz, 1H), 6.74 (d, J=6.0 Hz, 1H), 5.96 (d, J=7.2 Hz, 1H), 3.76-3.59 (m, 1H), 3.30-3.15 (m, 1H), 2.78-2.66 (m, 1H), 2.42 (s, 6H), 2.15-1.99 (m, 2H), 1.79-1.55 (m, 3H), 1.37 (dd, J=22.3, 10.2 Hz, 1H).
To a solution of (2-chloro-2,2-difluoro-acetyl)oxysodium (26 mg, 0.17 mmol) in DMF (0.50 mL) was added cesium carbonate (93 mg, 0.28 mmol) and the mixture stirred at rt for 3 min before addition of N-[(2,4-dimethoxyphenyl)methyl]-4-[[(1S,2S,4S)-2-(dimethylamino)-4-[3-(trifluoromethyl)phenyl]-cyclohexyl]amino]-2-fluoro-5-hydroxy-N-pyrimidin-4-yl-benzenesulfonamide (100 mg, 0.14 mmol) prepared in Example 1. The mixture was stirred at 80° C. for 40 min then filtered and ammonium formate (200 mg) and MeOH (2 mL) were added. The crude mixture was directly purified by prep HPLC-MS (CSH colunm, 65-85% MeCN/10 mM aqueous ammonium bicarbonate, pH=10) to provide 5-(difluoromethoxy)-N-(2,4-dimethoxybenzyl)-4-(((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)-cyclohexyl)amino)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide (48 mg, 45% yield) after lyophilization. LCMS (ESI) m/z: 754.3 [M+H]+.
Following the procedure described in Example 1 Step s and making non-critical variations as required to replace N-(2,4-dimethoxybenzyl)-4-((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)-cyclohexyl)-6-fluoro-3-oxo-N-(pyrimidin-4-yl)-3,4-dihydro-2H-benzo[b][1,4]oxazine-7-sulfonamide with 5-(difluoromethoxy)-N-(2,4-dimethoxybenzyl)-4-(((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)-phenyl)cyclohexyl)amino)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide (48 mg, 0.06 mmol), 5-(difluoromethoxy)-4-(((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)amino)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide formate (21 mg, 51% yield) was obtained. LCMS (ESI) m/z: 604.2 [M+H]+. 1H NMR (400 MHz, d6-DMSO) δ 8.38 (s, 1H), 8.12 (s, 1H), 8.06 (s, 1H), 7.67-7.45 (m, 6H), 7.09 (t, J=73.8 Hz, 1H), 6.79-6.67 (m, 2H), 5.89 (d, J=8.0 Hz, 1H), 3.57-3.68 (m, 1H), 2.72-2.81 (m, 1H), 2.40 (s, 6H), 2.01-2.21 (m, 2H), 1.77-1.62 (m, 3H), 1.25-1.37 (m, 1H).
Following the procedure described in Example 4 and making non-critical variations as required to replace 1-(3,4-dichlorophenyl)ethanone with 1-(4-fluoro-3-(trifluoromethyl)phenyl)ethanone, the title compound was obtained as a white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.40 (s, 1H), 8.07 (d, J=6.4 Hz, 1H), 7.68-7.59 (m, 3H), 7.51-7.43 (m, 1H), 6.80-6.68 (m, 2H), 5.94 (d, J=6.4 Hz, 1H), 3.74-3.61 (m, 1H), 3.25-3.23 (m, 1H), 2.87-2.77 (m, 1H), 2.41 (s, 6H), 2.15-2.01 (m, 2H), 1.78-1.58 (m, 3H), 1.45-1.32 (m, 1H). LCMS (ESI) m/z: 590.1 [M+H]+.
Following the procedure described in Example 4 and making non-critical variations as required to replace 1-(3,4-dichlorophenyl)ethanone with 1-(4-chloro-3-(trifluoromethyl)phenyl)ethanone, the title compound was obtained as a white solid. 1H NMR (400 MHz, CDCl3) δ 8.44 (m, 1H), 8.13-8.09 (m, 1H), 7.80-7.75 (m, 1H), 7.71-7.59 (m, 3H), 6.84-6.73 (m, 2H), 6.07-5.98 (m, 1H), 3.94-3.61 (m, 1H), 3.30-3.29 (m, 1H), 2.89-2.79 (m, 1H), 2.41 (s, 6H), 2.13-2.05 (m, 2H), 1.77-1.62 (m, 3H), 1.48-1.34 (m, 1H). LCMS (ESI) m/z: 606.2 [M+H]+.
To a solution of pyrrolidine (626 mg, 8.8 mmol) and 4-(dimethylamino)benzoic acid (2.91 g, 17.6 mmol) in DCM (80 mL) at 25° C. was added 37% w/w aqueous formaldehyde (9.42 g, 8.64 mL, 114.5 mmol) and 3-(3-(trifluoromethyl)phenyl)propanal (17.8 g, 88.0 mmol). The mixture was heated to 45° C. for 1 h under a nitrogen atmosphere. After cooling to room temperature, 7% aq. sodium bicarbonate (75 mL) was added and extracted with DCM (75 mL×3). The combined organic layers were washed with brine (100 mL), dried over anhydrous Na2SO4, filtered and concentrated in vacuo. The crude residue was purified by silica gel chromatography (solvent gradient: 0-6% EtOAc in petroleum ether) to give the title compound (15.7 g, 83%) as colorless oil. 1H NMR (400 MHz, CDCl3) δ 9.61 (s, 1H), 7.50-7.38 (m, 4H), 6.16 (s, 1H), 6.13 (s, 1H), 3.63 (s, 2H).
To a solution of 2-(3-(trifluoromethyl)benzyl)acrylaldehyde (15.7 g, 73.3 mmol) in MeOH (37 mL) at 0° C. was added sodium borohydride (3.1 g, 80.6 mmol) portionwise. The mixture was stirred at 0° C. for 30 min. The reaction was quenched with sat. aq. NH4Cl (37 mL). Water (73 mL) was added and extracted with EtOAc (75 mL×3). The combined organic layers were dried over anhydrous Na2SO4, filtered and concentrated in vacuo. The crude residue was purified by silica gel chromatography (solvent gradient: 0-10% EtOAc in petroleum ether) to give the title compound (12.6 g, 79%) as colorless oil. 1H NMR (400 MHz, CDCl3) δ 7.49-7.40 (m, 4H), 5.17 (s, 1H), 4.90 (s, 1H), 4.05 (s, 2H), 3.47 (s, 2H).
To a solution of 2-(3-(trifluoromethyl)benzyl)prop-2-en-1-ol (12.6 g, 58.1 mmol) in DCM (250 mL) at 0° C. was added triphenylphosphine (19.8 g, 75.5 mmol), imidazole (5.53 g, 81.3 mmol) and iodine (19.9 g, 78.4 mmol). The mixture was stirred at 0° C. for 1 h under a nitrogen atmosphere. The reaction was quenched with sat. aq. Na2SO3 (30 mL). The organic layer was dried over anhydrous Na2SO4, filtered and concentrated in vacuo. The crude residue was purified by silica gel chromatography (solvent gradient: 0-2% EtOAc in petroleum ether) to give the title compound (15.0 g, 79%) as colorless oil. 1H NMR (400 MHz, CDCl3) δ 7.52-7.43 (m, 4H), 5.36 (s, 1H), 4.93 (s, 1H), 3.83 (s, 2H), 3.65 (s, 2H).
Following the procedure described in Example 4 and making non-critical variations as required to replace 1,2-dichloro-4-(3-iodoprop-1-en-2-yl)benzene with 1-(2-(iodomethyl)allyl)-3-(trifluoromethyl)benzene, the title compound was obtained as a white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.37 (s, 1H), 8.04 (d, J=6.0 Hz, 1H), 7.61 (d, J=7.2 Hz, 1H), 7.58-7.49 (m, 4H), 6.74 (d, J=12.8 Hz, 1H), 6.67 (d, J=6.0 Hz, 1H), 5.78 (d, J=6.8 Hz, 1H), 3.43-3.41 (m, 1H), 3.13-2.96 (m, 1H), 2.77-2.69 (m, 1H), 2.63-2.55 (m, 2H), 2.37 (s, 6H), 2.04-1.89 (m, 2H), 1.73-1.60 (m, 1H), 1.52-1.44 (m, 1H), 1.21-1.13 (m, 2H). LCMS (ESI) m/z: 586.2 [M+H]+.
To a solution of tert-butyl ((1S,2S,4S)-2-amino-4-(3-(trifluoromethyl)phenyl)cyclohexyl)-carbamate (200 mg, 0.56 mmol) in CD3OD (5 mL) was added paraformaldehyde-D2 (54 mg, 1.67 mmol) and sodium cyanoborodeuteride (110 mg, 1.67 mmol). The mixture was heated to 65° C. for 16 h. After cooling to room temperature, the reaction was diluted with water (10 mL) and extracted with DCM (10 mL×3). The combined organic layers were washed with brine (10 mL×2), dried over anhydrous Na2SO4, filtered and concentrated in vacuo. The crude residue was purified by silica gel chromatography (solvent gradient: 0-100% EtOAc in petroleum ether) to give the title compound (0.18 g, 82%) as a white solid.
To a solution of tert-butyl N-[(1S,2S,4S)-2-[bis(trideuteriomethyl)amino]-4-[3-(trifluoromethyl)-phenyl]cyclohexyl]carbamate (0.26 g, 0.66 mmol) in DCM (8 mL) was added trifluoroacetic acid (0.1 mL, 0.73 mol). The mixture was stirred at room temperature for 1 h. The mixture was concentrated in vacuo to give the title compound (0.19 g, crude) as a white solid that required no further purification.
To a solution of (1S,2S,4S)—N2,N2-bis(trideuteriomethyl)-4-[3-(trifluoromethyl)phenyl]-cyclohexane-1,2-diamine (190 mg, 0.65 mmol) in DMF (3 mL) was added N,N-diisopropylethylamine (0.61 mL, 3.25 mmol) and 5-chloro-N-[(2,4-dimethoxyphenyl)methyl]-2,4-difluoro-N-pyrimidin-4-yl-benzenesulfonamide (385 mg, 0.84 mmol). The mixture was heated to 65° C. for 16 h. After cooling to room temperature, the reaction was diluted with water (30 mL) and extracted with DCM (30 mL×3). The combined organic layers were washed with brine (30 mL×2), dried over anhydrous Na2SO4, filtered and concentrated in vacuo. The crude residue was purified by silica gel chromatography (solvent gradient: 50-100% EtOAc in petroleum ether) to give the title compound (0.25 g, 53%) as a white solid. LCMS (ESI) m/z: 728.3 [M+H]+.
A mixture of 4-[[(1S,2S,4S)-2-[bis(trideuteriomethyl)amino]-4-[3-(trifluoromethyl)phenyl]-cyclohexyl]amino]-5-chloro-N-[(2,4-dimethoxyphenyl)methyl]-2-fluoro-N-pyrimidin-4-yl-benzene-sulfonamide (0.25 g, 0.34 mmol) and formic acid (10 mL) was stirred at room temperature for 4 h. The mixture was concentrated in vacuo. The crude residue was purified by reverse phase chromatography (acetonitrile 23-53%/0.225% formic acid in water) to give the title compound (84 mg, 40%) as a white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.43 (s, 1H), 8.10-8.08 (m, 1H), 7.68-7.59 (m, 3H), 7.58-7.54 (m, 2H), 6.84-6.80 (m, 1H), 6.77-6.74 (m, 1H), 6.05 (d, J=8.4 Hz, 1H), 4.21-4.01 (m, 1H), 3.52-3.47 (m, 1H), 2.86-2.83 (m, 1H), 2.17-2.03 (m, 2H), 1.80-1.73 (m, 3H), 1.46-1.41 (m, 1H). LCMS (ESI) m/z: 578.2 [M+H]+.
To a test tube was charged 5-bromo-N-(2,4-dimethoxybenzyl)-4-(((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)amino)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide (150 mg, 0.20 mmol) prepared in Example 1 and THF (0.50 mL). The mixture was sparged with N2 then bis-triphenylphosphine palladium dichloride (14 mg, 0.02 mmol), copper iodide (1.9 mg, 0.01 mmol) and trimethylsilylacetylene (38 mg, 0.39 mmol) and ethanolamine (0.02 mL, 0.39 mmol) were added in that order. The reaction mixture was sealed and heated to 65° C. overnight. After 16 h, the mixture was directly purified by flash column chromatography through Si gel (0-10% MeOH/DCM) to provide N-(2,4-dimethoxybenzyl)-4-(((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)amino)-2-fluoro-N-(pyrimidin-4-yl)-5-((trimethylsilyl)ethynyl)benzenesulfonamide (110 mg, 72% yield). LCMS (ESI) m/z: 784.4 [M+H]+.
N-[(2,4-dimethoxyphenyl)methyl]-4-[[(1S,2S,4S)-2-(dimethylamino)-4-[3-(trifluoromethyl)phenyl]-cyclohexyl]amino]-2-fluoro-N-pyrimidin-4-yl-5-(2-trimethylsilylethynyl)-benzenesulfonamide (110 mg, 0.14 mmol) was dissolved in methanol (0.50 mL) and to this solution was added potassium carbonate (291 mg, 2.1 mmol). The mixture was stirred at rt and was determined complete after 5 min. The mixture was filtered and the filtrate was concentrated. The crude material was suspended in DCM (2 mL) and passed through a silica pad washing with 10% MeOH/DCM and the filtrate was concentrated. The resulting deprotected terminal alkyne intermediate (100 mg) was dissolved in DMF (1 mL) and the solution was degassed for 20 min with N2. To the mixture was added chloro(1,5-cyclooctadiene)rhodium(I) dimer (11 mg, 0.02 mmol) and triphenylphosphine (24 mg, 0.09 mmol) and the mixture was stirred at 85° C. After 1 h, the reaction was determined to be complete and the crude mixture was directly purified by prep HPLC-MS (CSH colunm, 60-80% MeCN/10 mM aqueous ammonium bicarbonate, pH=10) to provide N-(2,4-dimethoxybenzyl)-1-((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)-6-fluoro-N-(pyrimidin-4-yl)-1H-indole-5-sulfonamide (72 mg, 65% yield) after lyophilization. LCMS (ESI) m/z: 712.5 [M+H]+.
Following the procedure described in Example 1 Step s and making non-critical variations as required to replace N-(2,4-dimethoxybenzyl)-4-((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)-cyclohexyl)-6-fluoro-3-oxo-N-(pyrimidin-4-yl)-3,4-dihydro-2H-benzo[b][1,4]oxazine-7-sulfonamide with N-(2,4-dimethoxybenzyl)-1-((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)-6-fluoro-N-(pyrimidin-4-yl)-1H-indole-5-sulfonamide (72 mg, 0.10 mmol), 1-((1S,2S,4S)-2-(dimethyl-amino)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)-6-fluoro-N-(pyrimidin-4-yl)-1H-indole-5-sulfonamide formate (41 mg, 72% yield) was obtained. LCMS (ESI) m/z: 562.2 [M+H]+. 1H NMR (400 MHz, d6-DMSO) δ 8.55 (s, 1H), 8.29 (s, 1H), 8.19-8.09 (m, 1H), 7.63 (dd, J=22.4, 12.8 Hz, 7H), 7.01 (d, J=5.6 Hz, 1H), 6.68 (s, 1H), 4.59-4.67 (m, 1H), 2.87-2.93 (m, 1H), 2.06 (s, 6H), 2.05-2.00 (m, 1H), 1.91-1.97 (m, 2H), 1.87-1.60 (m, 3H).
Following the procedure described in Example 1 and making non-critical variations as required to replace 1-(3-(trifluoromethyl)phenyl)ethanone with 1-(3-bromophenyl)ethanone, (4aS,8aS)-tert-butyl 6-(3-bromophenyl)-4-oxo-2,4,4a,5,8,8a-hexahydro-1H-benzo[d][1,3]oxazine-1-carboxylate was obtained as off-white foam. LCMS (ESI) m/z: 308.0, 310.0 [M+H]+.
In a sealed tube under nitrogen was added (4aS,8aS)-tert-butyl 6-(3-bromophenyl)-4-oxo-2,4,4a,5,8,8a-hexahydro-1H-benzo[d][1,3]oxazine-1-carboxylate (250 mg, 0.61 mmol), methylboronic acid (550 mg, 9.18 mmol) and 1,1-bis(diphenylphosphino)ferrocene-palladium dichloride CH2Cl2 adduct (100 mg, 0.12 mmol). Nitrogen degassed 1,4-Dioxane (4.3 mL) and nitrogen degassed water (0.85 mL) were then added followed by addition of cesium carbonate (602 mg, 1.84 mmol). The tube was sealed and the reaction mixture was stirred at 90° C. overnight. After 18 h, the crude mixture was directly purified by C18 reverse phase flash chromatography (10-60% MeCN/10 mM aqueous ammonium formate, pH=3.8). Appropriate fractions combined and lyophilized to provide (3S,4S)-4-((tert-butoxycarbonyl)amino)-3′-methyl-2,3,4,5-tetrahydro[1,1′-biphenyl]-3-carboxylic acid (118 mg, 58% yield). LCMS (ESI) m/z: 232.1 [M-Boc+H]+.
(3S,4S)-4-((tert-butoxycarbonyl)amino)-3′-methyl-2,3,4,5-tetrahydro-[1,1′-biphenyl]-3-carboxylic acid (118 mg, 0.36 mmol) was dissolved in toluene (1.2 mL) and to the solution was added triethylamine (70 uL, 0.50 mmol) and diphenylphosphoryl azide (84 uL, 0.39 mmol). The mixture was heated at 100° C. for 40 min then cooled to rt and purified directly by flash column chromatography through Si gel (EtOAc/Hexanes) to provide tert-butyl ((3S,4S)-3-isocyanato-3′-methyl-2,3,4,5-tetrahydro-[1,1′-biphenyl]-4-yl)carbamate (80 mg, 68.4% yield).
To a solution of tert-Butyl ((3S,4S)-3-isocyanato-3′-methyl-2,3,4,5-tetrahydro-[1,1′-biphenyl]-4-yl)carbamate (80 mg, 0.24 mmol) prepared above in THF (1.2 mL) was added a solution of potassium trimethylsilanolate (38 mg, 0.29 mmol) in THF (1.2 mL) and the mixture stirred at rt overnight. After 18 h, the mixture was quenched with saturated aqueous NaHCO3 (50 mL), and diluted with EtOAc (100 mL). The phases were separated and the aqueous layer was extracted again with EtOAc (3×50 mL). The combined organic extracts were dried (Na2SO4), filtered, and concentrated to give tert-butyl ((3S,4S)-3-amino-3′-methyl-2,3,4,5-tetrahydro-[1,1′-biphenyl]-4-yl)carbamate (68 mg, 92% yield) which was used directly in the next step without further purification. LCMS (ESI) m/z: 303.1 [M+H]+.
To a solution of tert-butyl ((3S,4S)-3-amino-3′-methyl-2,3,4,5-tetrahydro-[1,1′-biphenyl]-4-yl)carbamate (68 mg, 0.22 mmol) in methanol (1.1 mL) at 0° C. were added formaldehyde (37% w/w in H2O, 169 uL, 2.3 mmol) followed by sodium cyanoborohydride (56 mg, 0.90 mmol) and the mixture stirred at rt overnight. After 18 h, the mixture was diluted with saturated aqueous NaHCO3(25 mL) and EtOAc (100 mL). The phases were separated and the organic extract washed with saturated aqueous brine solution (2×30 mL), dried (Na2SO4), filtered and concentrated to give tert-butyl ((3S,4S)-3-(dimethylamino)-3′-methyl-2,3,4,5-tetrahydro-[1,1′-biphenyl]-4-yl)carbamate (74 mg, 99% yield) which was used directly in the next step without further purification. LCMS (ESI) m/z: 331.2 [M+H]+.
To tert-butyl ((3S,4S)-3-(dimethylamino)-3′-methyl-2,3,4,5-tetrahydro-[1,1′-biphenyl]-4-yl)carbamate (74 mg, 0.23 mmol) in ethyl acetate (1.1 mL) was added palladium hydroxide 20% on charcoal (29 mg), evacuated and purged with H2 then stirred at room temperature under a balloon of H2. After 72 h, the mixture was purged with nitrogen and filtered through Celite and concentrated to provide tert-butyl ((1S,2S,4S)-2-(dimethylamino)-4-(m-tolyl)cyclohexyl)carbamate (68 mg, 89% yield) which was used directly in the next step without further purification. LCMS (ESI) m/z: 333.2 [M+H]+.
To tert-butyl ((1S,2S,4S)-2-(dimethylamino)-4-(m-tolyl)cyclohexyl)carbamate (68 mg, 0.20 mmol) was added 4 N HCl in dioxane (2 mL, 8 mmol) and the solution was stirred at room temperature for 2 hours then concentrated to dryness to provide the crude deprotected amine HCl salt. To this crude deprotected amine HCl salt was added DMF (1.4 mL) followed by DIPEA (182 uL, 1.02 mmol) and 5-chloro-N-(2,4-dimethoxybenzyl)-2,4-difluoro-N-(pyrimidin-4-yl)benzenesulfonamide (103 mg, 0.22 mmol) prepared in Example 4. The mixture was stirred at 65° C. for 18 hours then cooled to rt and diluted with water and EtOAc. The organic layer was separated, washed with water, then with aqueous saturated brine solution, dried over Na2SO4, filtered and concentrated. The crude product was purified by flash column chromatography through Si gel to provide 5-chloro-N-(2,4-dimethoxybenzyl)-4-(((1S,2S,4S)-2-(dimethylamino)-4-(m-tolyl)cyclohexyl)amino)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide (86 mg, 63% yield). LCMS (ESI) m/z: 668.3 [M+H]+.
Following the procedure described in Example 1 Step s and making non-critical variations as required to replace N-(2,4-dimethoxybenzyl)-4-((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)-cyclohexyl)-6-fluoro-3-oxo-N-(pyrimidin-4-yl)-3,4-dihydro-2H-benzo[b][1,4]oxazine-7-sulfonamide with 5-chloro-N-(2,4-dimethoxybenzyl)-4-(((1S,2S,4S)-2-(dimethylamino)-4-(m-tolyl)cyclohexyl)amino)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide (86 mg, 0.13 mmol), 5-chloro-4-(((1S,2S,4S)-2-(dimethylamino)-4-(m-tolyl)cyclohexyl)amino)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide formate (31 mg, 43% yield) was obtained as a white solid. LCMS (ESI) m/z: 518.2, 520.2 [M+H]+. 1H NMR (500 MHz, d6-DMSO) δ 8.40 (s, 1H), 8.14 (s, 1H), 8.08 (d, J=6.0 Hz, 1H), 7.67 (d, J=7.3 Hz, 1H), 7.20 (t, J=7.6 Hz, 1H), 7.11 (s, 1H), 7.07 (d, J=7.8 Hz, 1H), 7.02 (d, J=7.4 Hz, 1H), 6.81 (d, J=13.1 Hz, 1H), 6.72 (d, J=5.5 Hz, 1H), 5.91 (d, J=8.2 Hz, 1H), 3.68 (s, 1H), 2.67-2.57 (m, 1H), 2.42 (s, 6H), 2.29 (s, 3H), 2.16-1.97 (m, 2H), 1.77-1.53 (m, 3H), 1.43-1.31 (m, 1H), 1.23 (s, 1H).
Following the procedure described in Example 4 and making non-critical variations as required to replace 1-(3,4-dichlorophenyl)ethanone with 1-(3,5-bis(trifluoromethyl)phenyl)ethanone, the title compound was obtained as a white solid. LCMS (ESI) m/z: 640.3 (M+H)+. 1H NMR (500 MHz, d6-DMSO) δ 8.43 (s, 1H), 8.11 (d, J=5.3 Hz, 1H), 8.03 (s, 2H), 7.96 (s, 1H), 7.68 (d, J=7.4 Hz, 1H), 6.80-6.71 (m, 2H), 5.99 (d, J=6.1 Hz, 1H), 3.80-3.63 (m, 1H), 3.25-3.15 (m, 1H), 3.01-2.93 (m, 1H), 2.41 (s, 6H), 2.17-2.02 (m, 2H), 1.87-1.77 (m, 2H), 1.72 (dd, J=24.2, 12.2 Hz, 1H), 1.50-1.31 (m, 1H).
Following the procedure described in Example 1 Step e and making non-critical variations as required to replace 5-bromo-2,4-difluorobenzene-1-sulfonyl chloride with 2,4,5-trifluorobenzenesulfonyl chloride, N-(2,4-dimethoxybenzyl)-2,4,5-trifluoro-N-(pyrimidin-4-yl)benzenesulfonamide was obtained as a pale yellow solid. LCMS (ESI) m/z: 440.1 [M+H]+.
Following the procedures described in Example 4 Steps c-d and making non-critical variations as required to replace (1S,2S,5S)-5-(3,4-dichlorophenyl)-N1,N1-dimethylcyclohexane-1,2-diamine with (1S,2S,5S)-5-(3,5-bis(trifluoromethyl)phenyl)-N1,N1-dimethylcyclohexane-1,2-diamine hydrochloride prepared in Example 12, and replacing 5-chloro-N-(2,4-dimethoxybenzyl)-2,4-difluoro-N-(pyrimidin-4-yl)benzenesulfonamide with N-(2,4-Dimethoxybenzyl)-2,4,5-trifluoro-N-(pyrimidin-4-yl)benzenesulfonamide, 4-(((1S,2S,4S)-4-(3,5-Bis(trifluoromethyl)phenyl)-2-(dimethylamino)cyclohexyl)-amino)-2,5-difluoro-N-(pyrimidin-4-yl)benzenesulfonamide was obtained. LCMS (ESI) m/z: 624.2 (M+H)+. 1H NMR (500 MHz, d6-DMSO) δ 8.40 (s, 1H), 8.07 (d, J=5.8 Hz, 1H), 8.02 (s, 2H), 7.96 (s, 1H), 7.42 (dd, J=11.4, 6.5 Hz, 1H), 6.77-6.67 (m, 2H), 6.09 (br s, 1H), 3.74-3.62 (m, 1H), 3.23-3.07 (m, 1H), 3.02-2.91 (m, 1H), 2.43 (s, 6H), 2.15-2.03 (m, 2H), 1.84-1.65 (m, 3H), 1.45-1.31 (m, 1H).
Following the procedure described in Example 4 and making non-critical variations as required to replace 1-(3,4-dichlorophenyl)ethanone with 1-(3-(difluoromethoxy)phenyl)ethanone, 5-chloro-4-[[(1S,2S,4S)-4-[3-(difluoromethoxy)phenyl]-2-(dimethylamino)cyclohexyl]amino]-2-fluoro-N-pyrimidin-4-yl-benzenesulfonamide was obtained. LCMS (ESI) m/z: 570.4, 572.4 [M+H]+. 1H NMR (500 MHz, d6-DMSO) δ 8.41 (s, 1H), 8.14 (s, 1H), 8.08 (d, J=6.0 Hz, 1H), 7.67 (d, J=7.3 Hz, 1H), 7.37 (t, J=7.9 Hz, 1H), 7.18 (d, J=7.9 Hz, 1H), 7.11 (s, 1H), 7.02 (dd, J=8.1, 2.2 Hz, 1H), 6.78 (d, J=12.8 Hz, 1H), 6.72 (d, J=5.9 Hz, 1H), 5.90 (d, J=6.8 Hz, 1H), 3.65 (s, 1H), 3.24-3.11 (m, 2H), 2.71 (tt, J=12.0, 3.4 Hz, 1H), 2.40 (s, J=17.4 Hz, 6H), 2.17-2.00 (m, 2H), 1.79-1.67 (m, 2H), 1.60 (dd, J=24.0, 11.8 Hz, 1H), 1.37 (qd, J=13.1, 3.9 Hz, 1H).
Following the procedure described in Example 4 and making non-critical variations as required to replace 1-(3,4-dichlorophenyl)ethanone with 1-(3-chloro-5-(trifluoromethyl)phenyl)ethanone, 1-fluoro-3-(prop-1-en-2-yl)-5-(trifluoromethyl)benzene was obtained as pale yellow oil. 1H NMR (400 MHz, CDCl3) δ 7.49 (s, 1H), 7.32 (d, J=10.0 Hz, 1H), 7.22 (d, J=8.3 Hz, 1H), 5.45 (s, 1H), 5.23 (s, 1H), 2.16 (dd, J=1.3, 0.7 Hz, 3H).
To a solution of 1-fluoro-3-(prop-1-en-2-yl)-5-(trifluoromethyl)benzene (2.00 g, 9.8 mmol) in DCM (33 mL) was added selenium dioxide (0.58 mL, 20.6 mmol), followed by tert-butyl hydroperoxide (70% w/w in water, 2.5 mL, 20.6 mmol). The reaction mixture was stirred at 25° C. for 5 days then saturated aqueous NaHCO3 was added slowly until gas evolution ceased. The mixture was transferred to a separatory funnel and the phases were separated. The organic layer was washed with water (2×30 mL), dried over Na2SO4, filtered and concentrated. The crude material was purified by flash chromatography through Si gel (MeOH/DCM) to provide 2-(3-fluoro-5-(trifluoromethyl)phenyl)prop-2-en-1-ol (1.17 g, 54% yield). 1H NMR (400 MHz, CDCl3) δ 7.51 (s, 1H), 7.38-7.34 (m, 1H), 7.29-7.24 (m, 1H), 5.58 (d, J=0.5 Hz, 1H), 5.50 (s, 1H), 4.54 (dd, J=6.0, 0.6 Hz, 2H).
To a solution of 2-(3-fluoro-5-(trifluoromethyl)phenyl)prop-2-en-1-ol (1.17 g, 5.31 mmol) in DCM (27 mL) was added triphenylphosphine (1.81 g, 6.90 mmol), imidazole (0.51 g, 7.44 mmol) and iodine (1.82 g, 7.17 mmol) in that order. The reaction mixture was stirred at 0° C. for 40 minutes then diluted with DCM (20 mL) and saturated aqueous Na2S2O3 (60 mL). The phases were separated and the organic extract was washed with brine (2×60 mL), dried (Na2SO4), filtered and concentrated. The crude material was purified by flash chromatography through Si gel (EtOAc/Hexanes) to provide 1-fluoro-3-(3-iodoprop-1-en-2-yl)-5-(trifluoromethyl)benzene (1.26 g, 72% yield). 1H NMR (400 MHz, CDCl3) δ 7.49 (s, 1H), 7.34 (dt, J=9.7, 1.8 Hz, 1H), 7.30 (d, J=8.2 Hz, 1H), 5.66 (s, 1H), 5.54 (s, 1H), 4.28 (s, 2H).
Following the procedure described in Example 4 and making non-critical variations as required to replace 1,2-dichloro-4-(3-iodoprop-1-en-2-yl)benzene with 1-fluoro-3-(3-iodoprop-1-en-2-yl)-5-(trifluoromethyl)benzene, 5-chloro-4-[[(1S,2S,4S)-2-(dimethylamino)-4-[3-fluoro-5-trifluoromethyl)phenyl]cyclohexyl]-amino]-2-fluoro-N-pyrimidin-4-yl-benzenesulfonamide formic acid was obtained. LCMS (ESI) m/z: 590.4, 592.3 [M+H]+. 1H NMR (500 MHz, d6-DMSO) δ 8.36 (s, 1H), 8.14 (s, 1H), 8.02 (s, 1H), 7.65 (d, J=7.2 Hz, 1H), 7.55-7.48 (m, 3H), 6.68 (d, J=12.7 Hz, 2H), 5.82 (d, J=3.2 Hz, 1H), 3.54 (s, 1H), 3.02 (s, 1H), 2.84 (t, J=11.5 Hz, 1H), 2.31 (s, J=23.1 Hz, 6H), 2.16 (dd, J=12.4, 2.6 Hz, 1H), 2.03 (d, J=12.5 Hz, 1H), 1.76 (dd, J=9.6, 3.4 Hz, 2H), 1.61 (dd, J=23.9, 11.8 Hz, 1H), 1.35 (ddd, J=16.5, 12.7, 5.6 Hz, 1H).
Following the procedure described in Example 4 and making non-critical variations as required to replace 1-(3,4-dichlorophenyl)ethanone with 1-(2-fluoro-3-(trifluoromethyl)phenyl)ethanone, the title compound was obtained as a white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.43 (s, 1H), 8.15-8.09 (m, 1H), 7.77-7.73 (m, 1H), 7.70-7.63 (m, 2H), 7.46-7.39 (m, 1H), 6.83 (d, J=13.2 Hz, 1H), 6.76 (d, J=6.0 Hz, 1H), 5.99-5.92 (m, 1H), 3.77-3.62 (m, 1H), 3.10-3.01 (m, 1H), 2.42 (s, 6H), 2.16-1.93 (m, 3H), 1.79-1.69 (m, 3H), 1.48-1.38 (m, 1H). LCMS (ESI) m/z: 590.1 [M+H]+.
Following the procedure described in Example 4 and making non-critical variations as required to replace 1-(3,4-dichlorophenyl)ethanone with 1-(2-fluoro-5-(trifluoromethyl)phenyl)ethanone, the title compound was obtained as a white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.44 (s, 1H), 8.11 (d, J=6.0 Hz, 1H), 7.77 (d, J=6.4 Hz, 1H), 7.72-7.65 (m, 2H), 7.46-7.41 (m, 1H), 6.85-6.70 (m, 2H), 5.96 (d, J=7.2 Hz, 1H), 3.82-3.62 (m, 1H), 3.14-2.96 (m, 1H), 2.57-2.52 (m, 1H), 2.41 (s, 6H), 2.18-1.99 (m, 2H), 1.87-1.67 (m, 3H), 1.51-1.34 (m, 1H). LCMS (ESI) m/z: 590.1 [M+H]+.
To a solution of methyltriphenylphosphonium bromide (40.59 g, 113.63 mmol) in THF (100 mL) at 0° C. was added n-BuLi (43.63 mL, 109.08 mmol, 2.5 M). The mixture was stirred at 0° C. for 10 min under a nitrogen atmosphere. After cooling to −78° C., 1-(3-bromophenyl)-2,2,2-trifluoroethanone (23.0 g, 90.9 mmol) in THF (100 mL) was added dropwise. The mixture was stirred at 20° C. for an additional 1 h. Sat. aq. NH4Cl (150 mL) was added and extracted with EtOAc (100 mL×3). The combined organic layers were washed with brine (500 mL), dried over anhydrous Na2SO4, filtered and concentrated in vacuo. The crude residue was purified by silica gel chromatography (petroleum ether) to give the title compound (16.0 g, 70%) as colorless oil.
To a solution of diphenyl(methyl)sulfonium tetrafluoroborate (27.54 g, 95.6 mmol) and 1-bromo-3-(3,3,3-trifluoroprop-1-en-2-yl)benzene (16.0 g, 63.73 mmol) in THF (150 mL) at −78° C. was added LiHMDS (191.2 mL, 191.2 mmol, 1.0 M) dropwise. The mixture was stirred at −78° C. for 3 h under a nitrogen atmosphere. The reaction was quenched with sat. aq. NH4Cl (60 mL). Water (150 ml) was added and extracted with EtOAc (80 mL×3). The combined organic layers were washed with brine (250 mL), dried over anhydrous Na2SO4, filtered and concentrated in vacuo. The crude residue was purified by silica gel chromatography (petroleum ether) to give the title compound (9.43 g, 56%) as colorless oil.
To a solution of 1-bromo-3-(1-(trifluoromethyl)cyclopropyl)benzene (4.0 g, 15.1 mmol) in 1-butyl-3-methylimidazolium tetrafluoroborate (15 mL) and DMSO (15 mL) was added Pd(OAc)2 (0.17 g, 0.75 mmol), prop-2-en-1-ol (2.63 g, 45.27 mmol) and triethylamine (3.15 mL, 22.64 mmol). The mixture was heated to 115° C. for 16 h under a nitrogen atmosphere. After cooling to room temperature, the reaction was diluted with ice water (100 mL) and extracted with EtOAc (100 mL×3). The combined organic layers were washed with brine (300 mL), dried over anhydrous Na2SO4, filtered and concentrated in vacuo. The crude residue was purified by silica gel chromatography (solvent gradient: 0-10% EtOAc in petroleum ether) to give the title compound (0.30 g, 8%) as yellow oil.
Following the procedure described in Example 8 and making non-critical variations as required to replace 2-(3-(trifluoromethyl)benzyl)prop-2-en-1-ol with 2-(3-(1-(trifluoromethyl)cyclopropyl)phenyl)prop-2-en-1-ol, the title compound was obtained as a white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.42 (s, 1H), 8.10 (d, J=6.0 Hz, 1H), 7.67 (d, J=7.2 Hz, 1H), 7.39 (s, 1H), 7.28-7.36 (m, 3H), 6.85 (d, J=13.2 Hz, 1H), 6.74 (d, J=6.0 Hz, 1H), 5.98 (d, J=7.6 Hz, 1H), 3.86-3.72 (m, 1H), 2.76-2.63 (m, 1H), 2.53-2.51 (m, 1H), 2.47 (s, 6H), 2.13-2.04 (m, 2H), 1.76-1.69 (m, 2H), 1.68-1.61 (m, 1H), 1.48-1.46 (m, 1H), 1.34-1.28 (m, 2H), 1.14-1.08 (m, 2H). LCMS (ESI) m/z: 612.1 [M+H]+.
Following the procedure described in Example 4 and making non-critical variations as required to replace 1-(3,4-dichlorophenyl)ethanone with 1-(3-(trifluoromethoxy)phenyl)ethanone, the title compound was obtained as a white solid. 1H NMR (400 MHz, CD3OD) δ 8.46 (s, 1H), 8.13 (d, J=6.0 Hz, 1H), 7.56-7.49 (m, 1H), 7.47-7.41 (m, 1H), 7.39-7.33 (m, 1H), 7.26 (s, 1H), 7.16 (d, J=7.6 Hz, 1H), 6.94 (d, J=6.0 Hz, 1H), 6.88-6.79 (m, 1H), 4.00-3.88 (m, 1H), 3.68-3.58 (m, 1H), 2.94-2.78 (m, 1H), 2.84 (s, 6H), 2.37-2.23 (m, 2H), 1.98-1.85 (m, 2H), 1.81-1.67 (m, 1H), 1.60-1.45 (m, 1H). LCMS (ESI) m/z: 572.2 [M+H]+.
To a solution of tert-butyl (4aS,8aS)-6-(3-bromophenyl)-4-oxo-4a,5,8,8a-tetrahydro-2H-3,1-benzoxazine-1-carboxylate (740 mg, 1.81 mmol) prepared in Example 11 in THF (9 mL) was added a solution of lithium hydroxide monohydrate (228 mg, 5.44 mmol) in H2O (9 mL) and the mixture was stirred at rt. After 3 h, 6N HCl (0.91 mL, 5.44 mmol) was added to acidify to pH ˜3. The solution was diluted with EtOAc (125 mL) and the phases were separated. The organic extract was washed with brine, dried (Na2SO4), filtered and concentrated in vacuo to provide (3S,4S)-3′-Bromo-4-((tert-butoxycarbonyl)amino)-2,3,4,5-tetrahydro-[1,1′-biphenyl]-3-carboxylic acid (713 mg, 99% yield) which was used directly in the next step without further purification. LCMS (ESI) m/z: 394.1 [M−H]−.
Following the procedures described in Example 11 Steps b-d and making non-critical variations as required to replace (3S,4S)-4-((tert-butoxycarbonyl)amino)-3′-methyl-2,3,4,5-tetrahydro-[1,1′-biphenyl]-3-carboxylic acid with (3S,4S)-3′-Bromo-4-((tert-butoxycarbonyl)amino)-2,3,4,5-tetrahydro-[1,1′-biphenyl]-3-carboxylic acid, tert-Butyl ((3S,4S)-3′-bromo-3-(dimethylamino)-2,3,4,5-tetrahydro-[1,1′-biphenyl]-4-yl)carbamate was obtained. LCMS (ESI) m/z: 397.1 [M+H]+.
A solution of tris(dibenzylideneacetone)-dipalladium(0) (28 mg, 0.03 mmol) and 2-di-t-butylphosphino-3,4,5,6-tetramethyl-2′-4′-6′-tri-i-propylbiphenyl (29 mg, 0.06 mmol) in a mixture of N2 degassed toluene (0.5 mL) and N2 degassed 1,4-dioxane (0.1 mL) was heated 10 minutes at 120° C. This mixture was then transferred to a solution of tert-butyl ((3S,4S)-3′-bromo-3-(dimethylamino)-2,3,4,5-tetrahydro-[1,1′-biphenyl]-4-yl)carbamate (120 mg, 0.30 mmol), pyrazole (44 mg, 0.64 mmol) and potassium phosphate tribasic (28 mg, 0.13 mmol) in a mixture of N2 degassed toluene (2.0 mL) and N2 degassed 1,4-dioxane (0.5 mL) and the resulting solution was heated at 120° C. After 18 h, the mixture was cooled to rt and diluted with EtOAc and water. The phases were separated and the organic extract was washed with saturated aqueous brine solution, dried over Na2SO4, filtered and concentrated. The crude product was purified by flash column chromatography through Si gel (MeOH/DCM) to provide tert-butyl ((3S,4S)-3-(dimethylamino)-3′-(1H-pyrazol-1-yl)-2,3,4,5-tetrahydro-[1,1′-biphenyl]-4-yl)carbamate (100 mg, 86% yield). LCMS (ESI) m/z: 383.2 [M+H]+
Following the procedures described in Example 11 Steps e-g and making non-critical variations as required to replace tert-butyl ((3S,4S)-3-(dimethylamino)-3′-methyl-2,3,4,5-tetrahydro-[1,1′-biphenyl]-4-yl)carbamate with 4-(((1S,2S,4S)-4-(3-(1H-pyrazol-1-yl)phenyl)-2-(dimethylamino)cyclohexyl)amino)-5-chloro-N-(2,4-dimethoxybenzyl)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide, 4-(((1S,2S,4S)-4-(3-(1H-pyrazol-1-yl)phenyl)-2-(dimethylamino)cyclohexyl)amino)-5-chloro-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide formate (44 mg, 68% yield) was obtained as a white solid. LCMS (ESI) m/z: 570.1, 572.1 [M+H]+. 1H NMR (500 MHz, d6-DMSO) δ 8.50 (d, J=2.5 Hz, 1H), 8.43 (s, 1H), 8.14 (s, 1H), 8.11 (d, J=6.0 Hz, 1H), 7.80 (t, J=1.8 Hz, 1H), 7.75-7.72 (m, 1H), 7.72-7.64 (m, 2H), 7.44 (t, J=7.9 Hz, 1H), 7.24 (d, J=7.8 Hz, 1H), 6.83 (d, J=13.0 Hz, 1H), 6.75 (d, J=6.0 Hz, 1H), 6.55 (dd, J=2.4, 1.8 Hz, 1H), 5.97 (d, J=7.4 Hz, 1H), 3.75 (s, 1H), 2.82-2.69 (m, 1H), 2.46 (s, 6H), 2.17-2.05 (m, 2H), 1.85-1.59 (m, 3H), 1.52-1.33 (m, 1H).
In a vial under nitrogen was added 1,1-bis(diphenylphosphino)ferrocene-palladium dichloride (22 mg, 0.03 mmol), tert-butyl ((3S,4S)-3′-bromo-3-(dimethylamino)-2,3,4,5-tetrahydro-[1,1′-biphenyl]-4-yl)carbamate (120 mg, 0330 mmol) prepared in Example 20, sodium carbonate (64 mg, 0.61 mmol) and N2 degassed 1,4-Dioxane (2.4 mL) and N2 degassed water (0.6 mL). The reaction was sparged with nitrogen for 1 min then to this was added (1-methyl-1H-pyrazol-5-yl)boronic acid (57 mg, 0.46 mmol). The vial was sealed and the reaction mixture was stirred at 80° C. After 4 h, the mixture was cooled to room temperature, diluted with EtOAc and water. The phases were separated and the organic extract was washed with saturated aqueous brine solution, dried over Na2SO4, filtered and concentrated. The crude product was purified by flash column chromatography through Si gel (MeOH/DCM) to provide tert-butyl ((3S,4S)-3-(dimethylamino)-3′-(1-methyl-1H-pyrazol-5-yl)-2,3,4,5-tetrahydro-[1,1′-biphenyl]-4-yl)carbamate (112 mg, 86% yield). LCMS (ESI) m/z: 397.3 [M+H]+.
Following the procedures described in Example 11 Steps e-g and making non-critical variations as required to replace tert-butyl ((3S,4S)-3-(dimethylamino)-3′-methyl-2,3,4,5-tetrahydro-[1,1′-biphenyl]-4-yl)carbamate with 5-chloro-N-(2,4-dimethoxybenzyl)-4-(((1S,2S,4S)-2-(dimethylamino)-4-(3-(1-methyl-1H-pyrazol-5-yl)phenyl)cyclohexyl)amino)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide, 5-chloro-4-(((1S,2S,4S)-2-(dimethylamino)-4-(3-(1-methyl-1H-pyrazol-5-yl)phenyl)cyclohexyl)amino)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide was obtained as a white solid. LCMS (ESI) m/z: 584.2, 586.1 [M+H]+. 1H NMR (500 MHz, d6-DMSO) δ 8.39 (s, 1H), 8.06 (d, J=5.5 Hz, 1H), 7.66 (d, J=7.3 Hz, 1H), 7.47 (d, J=1.9 Hz, 1H), 7.46-7.42 (m, 2H), 7.39-7.34 (m, 2H), 6.77 (d, J=12.6 Hz, 1H), 6.70 (d, J=5.7 Hz, 1H), 6.40 (d, J=1.9 Hz, 1H), 5.89 (d, J=4.2 Hz, 1H), 3.86 (s, 3H), 3.65 (s, 1H), 3.26-3.09 (m, 1H), 2.81-2.69 (m, 1H), 2.40 (s, 6H), 2.12 (dd, J=27.7, 10.7 Hz, 2H), 1.88-1.55 (m, 3H), 1.47-1.27 (m, 1H).
Following the procedures described in Example 21 and making non-critical variations as required to replace (1-methyl-1H-pyrazol-5-yl)boronic acid with (1-methyl-1H-pyrazol-4-yl)boronic acid, tert-butyl ((3S,4S)-3-(dimethylamino)-3′-(1-methyl-1H-pyrazol-4-yl)-2,3,4,5-tetrahydro-[1,1′-biphenyl]-4-yl)carbamate was obtained as an off-white solid. LCMS (ESI) m/z: 584.3, 586.33 [M+H]+. 1H NMR (500 MHz, d6-DMSO) δ 8.28 (d, J=21.7 Hz, 3H), 8.13 (s, 1H), 7.89 (d, J=5.7 Hz, 1H), 7.85 (s, 1H), 7.60 (d, J=7.3 Hz, 1H), 7.46 (s, 1H), 7.37 (d, J=7.7 Hz, 1H), 7.27 (t, J=7.7 Hz, 1H), 7.09 (d, J=7.8 Hz, 1H), 6.58 (d, J=12.5 Hz, 1H), 6.52 (d, J=5.5 Hz, 1H), 5.63 (d, J=3.5 Hz, 1H), 3.86 (s, 3H), 2.83-2.74 (m, 2H), 2.67-2.61 (m, 1H), 2.29-2.23 (m, 1H), 2.19 (s, 6H), 1.94 (d, J=12.1 Hz, 1H), 1.76 (t, J=7.4 Hz, 2H), 1.53 (q, J=12.1 Hz, 1H), 1.31 (dt, J=21.0, 10.6 Hz, 1H).
To a solution of tert-butyl ((1S,2S,4S)-2-amino-4-(3-(trifluoromethyl)phenyl)cyclohexyl)-carbamate (2.9 g, 8.09 mmol) in MeCN (100 mL) was added 1,4-dibromobutane (2.10 g, 9.71 mmol) and triethylamine (3.37 mL, 24.27 mmol). The mixture was heated to 80° C. for 16 h. After cooling to room temperature, the reaction was diluted with water (50 mL) and extracted with EtOAc (150 mL). The organic layer was dried over anhydrous Na2SO4, filtered and concentrated in vacuo. The crude residue was purified by silica gel chromatography (solvent gradient: 20-50% EtOAc (1% NH4OH) in petroleum ether) to give the title compound (2.0 g, 60%) as yellow oil. 1H NMR (400 MHz, CDCl3) δ 7.47-7.39 (m, 4H), 5.40-5.29 (m, 1H), 3.35-3.25 (m, 1H), 2.72-2.52 (m, 6H), 2.05-2.00 (m, 1H), 1.93-1.86 (m, 1H), 1.75-1.70 (m, 4H), 1.60-1.58 (m, 4H), 1.47 (s, 9H).
To a solution of tert-butyl ((1S,2S,4S)-2-(pyrrolidin-1-yl)-4-(3-(trifluoromethyl)phenyl)-cyclohexyl)carbamate (2.0 g, 4.85 mmol) in EtOAc (10 mL) was added 4 M HCl in EtOAc (24.24 mL, 96.97 mmol). The mixture was stirred at room temperature for 2 h. The mixture was concentrated in vacuo to give the title compound (1.7 g, crude) as a light yellow solid that required no further purification. 1H NMR (400 MHz, CDCl3) δ 10.94 (s, 1H), 9.15 (s, 2H), 7.57-7.41 (m, 4H), 4.67-4.53 (m, 1H), 4.09-3.97 (m, 2H), 3.47-3.25 (m, 2H), 3.09-2.76 (m, 2H), 2.29-2.08 (m, 6H), 2.04-1.78 (m, 4H).
To a solution of (1S,2S,4S)-2-(pyrrolidin-1-yl)-4-(3-(trifluoromethyl)phenyl)cyclohexanamine hydrochloride (1.7 g, 4.87 mmol) in DMF (48 mL) was added N,N-diisopropylethylamine (12.73 mL, 73.1 mmol) and N-(2,4-dimethoxybenzyl)-2,4,5-trifluoro-N-(pyrimidin-4-yl)benzenesulfonamide (2.78 g, 6.34 mmol). The mixture was heated to 65° C. for 16 h. After cooling to room temperature, the reaction was diluted with water (30 mL) and extracted with EtOAc (100 mL). The organic layer was washed with brine (30 mL×2), dried over anhydrous Na2SO4, filtered and concentrated in vacuo. The crude residue was purified by silica gel chromatography (solvent gradient: 0-50% EtOAc (1% NH4OH) in petroleum ether) to give the title compound (2.2 g, 62%) as yellow oil. 1H NMR (400 MHz, CDCl3) δ 8.81 (s, 1H), 8.45 (d, J=6.0 Hz, 1H), 7.62-7.57 (m, 1H), 7.52-7.40 (m, 4H), 7.33-7.30 (m, 1H), 7.21 (d, J=8.0 Hz, 1H), 6.45-6.39 (m, 2H), 6.37-6.30 (m, 1H), 5.73 (s, 1H), 5.28 (s, 2H), 3.82 (s, 3H), 3.78 (s, 3H), 3.15-2.99 (m, 1H), 2.82-2.71 (m, 1H), 2.64-2.54 (m, 4H), 2.49-2.41 (m, 1H), 2.17-2.09 (m, 1H), 2.03-1.94 (m, 1H), 1.79-1.62 (m, 6H), 1.44-1.24 (m, 2H).
A mixture of N-(2,4-dimethoxybenzyl)-2,5-difluoro-N-(pyrimidin-4-yl)-4-(((1S,2S,4S)-2-(pyrrolidin-1-yl)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)amino)benzenesulfonamide (2.4 g, 3.28 mmol) and formic acid (20 mL) was stirred at room temperature for 2 h. The mixture was concentrated in vacuo. The crude residue was purified by reverse phase chromatography (acetonitrile 20-50%/0.225% formic acid in water) to give the title compound (793 mg, 40%) as a white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.39 (s, 1H), 8.14 (s, 1H), 8.05 (d, J=6.0 Hz, 1H), 7.70-7.54 (m, 4H), 7.46-7.38 (m, 1H), 6.82-6.75 (m, 1H), 6.70 (d, J=6.0 Hz, 1H), 6.21 (d, J=8.8 Hz, 1H), 3.84-3.71 (m, 1H), 3.49-3.47 (m, 1H), 3.21-3.15 (m, 2H), 3.09-2.98 (m, 2H), 2.90-2.76 (m, 1H), 2.19-2.11 (m, 1H), 2.09-2.00 (m, 1H), 1.83-1.70 (m, 7H), 1.50-1.36 (m, 1H). LCMS (ESI) m/z: 582.1 [M+H]+.
Following the procedure described in Example 15 and making non-critical variations as required to replace 1-(3-chloro-5-(trifluoromethyl)phenyl)ethanone with 1-(3-chloro-5-(trifluoromethyl)phenyl)-ethanone, 5-chloro-4-(((1S,2S,4S)-4-(3-chloro-5-(trifluoromethyl)phenyl)-2-(dimethylamino)-cyclohexyl)amino)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide (25 mg, 50% yield) was obtained as a white solid. LCMS (ESI) m/z: 606.1, 608.1 [M+H]+. 1H NMR (500 MHz, d6-DMSO) δ 8.26 (s, 1H), 8.21 (s, 2H), 7.90 (d, J=6.0 Hz, 1H), 7.72 (s, 1H), 7.66 (d, J=14.2 Hz, 2H), 7.60 (d, J=7.3 Hz, 1H), 6.56 (d, J=12.6 Hz, 1H), 6.52 (d, J=6.1 Hz, 1H), 5.63 (d, J=3.9 Hz, 2H), 3.42-3.32 (m, 3H), 2.88-2.72 (m, 2H), 2.28-2.13 (m, 6H), 2.01-1.86 (m, 1H), 1.85-1.70 (m, 2H), 1.57 (dd, J=24.2, 12.2 Hz, 1H), 1.39-1.15 (m, 2H).
Following the procedure described in Example 1 and making non-critical variations as required to replace 1-(3-(trifluoromethyl)phenyl)ethanone with 1-(3-chloro-5-fluorophenyl)ethanone, (4aS,8aS)-tert-butyl 6-(3-chloro-5-fluorophenyl)-4-oxo-2,4,4a,5,8,8a-hexahydro-1H-benzo[d][1,3]oxazine-1-carboxylate was obtained. LCMS (ESI) m/z: 282.0 (M-Boc+H)+.
Following the procedures described in Example 11 Steps b-d and making non-critical variations as required to replace (3S,4S)-4-((tert-butoxycarbonyl)amino)-3′-methyl-2,3,4,5-tetrahydro-[1,1′-biphenyl]-3-carboxylic acid with (4aS,8aS)-tert-butyl 6-(3-chloro-5-fluorophenyl)-4-oxo-2,4,4a,5,8,8a-hexahydro-1H-benzo[d][1,3]oxazine-1-carboxylate, tert-butyl ((3S,4S)-3′-chloro-3-(dimethylamino)-5′-fluoro-2,3,4,5-tetrahydro-[1,1′-biphenyl]-4-yl)carbamate was obtained. LCMS (ESI) m/z: 369.3 (M+H)+.
Following the procedure described in Example 11 Step e and making non-critical variations as required to replace tert-butyl ((3S,4S)-3-(dimethylamino)-3′-methyl-2,3,4,5-tetrahydro-[1,1′-biphenyl]-4-yl)carbamate with tert-butyl ((3S,4S)-3′-chloro-3-(dimethylamino)-5′-fluoro-2,3,4,5-tetrahydro-[1,1′-biphenyl]-4-yl)carbamate, tert-butyl ((1S,2S,4S)-4-(3-chloro-5-fluorophenyl)-2-(dimethylamino)cyclohexyl)carbamate was obtained. LCMS (ESI) m/z: 371.2 (M+H)+. tert-Butyl ((1S,2S,4S)-2-(dimethylamino)-4-(3-fluorophenyl)cyclohexyl)carbamate was also obtained. LCMS (ESI) m/z: 337.2 (M+H)+.
Following the procedure described in Example 4 and making non-critical variations as required to replace (1S,2S,5S)-5-(3,4-dichlorophenyl)-N1,N1-dimethylcyclohexane-1,2-diamine with tert-butyl ((1S,2S,4S)-4-(3-chloro-5-fluorophenyl)-2-(dimethylamino)cyclohexyl)carbamate, 5-Chloro-4-(((1S,2S,4S)-4-(3-chloro-5-fluorophenyl)-2-(dimethylamino)cyclohexyl)amino)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide 1-fluoro-3-(prop-1-en-2-yl)-5-(trifluoromethyl) was obtained. LCMS (ESI) m/z: 556.0 (M+H)+. 1H NMR (500 MHz, d6-DMSO) δ 8.43 (s, 1H), 8.11 (d, J=5.7 Hz, 1H), 7.68 (d, J=7.4 Hz, 1H), 7.30-7.23 (m, 2H), 7.21-7.15 (m, 1H), 6.81-6.70 (m, 2H), 5.96 (d, J=6.6 Hz, 1H), 3.72-3.62 (m, 1H), 3.30-3.14 (m, 1H), 2.78-2.70 (m, 1H), 2.42 (s, 6H), 2.08 (t, J=13.0 Hz, 2H), 1.81-1.55 (m, 3H), 1.44-1.30 (m, 1H).
Following the procedure described in Example 4 and making non-critical variations as required to replace (1S,2S,5S)-5-(3,4-dichlorophenyl)-N1,N1-dimethylcyclohexane-1,2-diamine with tert-butyl ((1S,2S,4S)-2-(dimethylamino)-4-(3-fluorophenyl)cyclohexyl)carbamate prepared in Example 25 Step c, 5-chloro-4-(((1S,2S,4S)-2-(dimethylamino)-4-(3-fluorophenyl)-cyclohexyl)amino)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide formate was obtained. LCMS (ESI) m/z: 522.1 (M+H)+. 1H NMR (500 MHz, d6-DMSO) δ 8.42 (s, 1H), 8.09 (d, J=5.2 Hz, 1H), 7.67 (d, J=7.3 Hz, 1H), 7.39-7.31 (m, 1H), 7.16-7.12 (m, 2H), 7.07-7.00 (m, 1H), 6.79 (d, J=13.1 Hz, 1H), 6.73 (d, J=5.5 Hz, 1H), 5.92 (d, J=5.5 Hz, 1H), 3.71-3.62 (m, 1H), 3.24-3.14 (m, 1H), 2.77-2.66 (m, 1H), 2.41 (s, 6H), 2.14-2.01 (m, 2H), 1.80-1.53 (m, 3H), 1.46-1.32 (m, 1H).
Following the procedure described in Example 4 and making non-critical variations as required to replace 1-(3,4-dichlorophenyl)ethanone with 1-(3-(2,2,2-trifluoroethyl)phenyl)ethanone, the title compound was obtained as a white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.43 (s, 1H), 8.10 (d, J=6.4 Hz, 1H), 7.67 (d, J=7.6 Hz, 1H), 7.37-7.26 (m, 3H), 7.21 (d, J=7.2 Hz, 1H), 6.85 (d, J=13.2 Hz, 1H), 6.75 (d, J=6.0 Hz, 1H), 5.97 (d, J=8.4 Hz, 1H), 3.81-3.71 (m, 1H), 3.66-3.59 (m, 2H), 3.23-3.21 (m, 1H), 2.75-2.67 (m, 1H), 2.47 (s, 6H), 2.14-2.05 (m, 2H), 1.75-1.59 (m, 3H), 1.46-1.35 (m, 1H). LCMS (ESI) m/z: 586.2 [M+H]+.
tert-Butyl ((1S,2S,4S)-2-amino-4-(3-(trifluoromethyl)phenyl)cyclohexyl)carbamate (350 mg, 0.980 mmol) prepared in Example 1 was dissolved in hexafluoroisopropanol (3 mL) and to this solution was added methyl trifluoromethanesulfonate (0.17 mL, 1.46 mmol) at room temperature slowly. The reaction was stirred for 1 hour then passed through a silica pad (60 mL of silica) and washed with 50% EtOAc/Hexanes (100 mL) followed by 10% MeOH/DCM. The DCM/MeOH filtrate was concentrated in vacuo to give a crude mixture of the starting material tert-butyl ((1S,2S,4S)-2-amino-4-(3-(trifluoromethyl)phenyl)cyclohexyl)carbamate (120 mg, 0.33 mmol, 34% yield) and tert-butyl ((1S,2S,4S)-2-(methylamino)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)carbamate (150 mg, 0.403 mmol, 41% yield) which was used directly in the next step as a mixture. LCMS (ESI) m/z: 373.2 [M+H]+.
The crude mixture of tert-butyl ((1S,2S,4S)-2-amino-4-(3-(trifluoromethyl)phenyl)-cyclohexyl)carbamate and tert-butyl ((1S,2S,4S)-2-(methylamino)-4-(3-(trifluoromethyl)-phenyl)cyclohexyl)carbamate (80 mg, ca. 0.21 mmol) was dissolved in DMF (0.5 mL) and to the solution was added HATU (195 mg, 0.52 mmol), N,N-dimethylglycine (44 mg, 0.43 mmol) and DIPEA (83 mg, 0.64 mmol). The reaction was stirred at room temperature for 1 hour then directly purified by C18 reverse phase flash colunm chromatography (0-100% MeCN/10 mM aqueous ammonium bicarbonate, pH=10). Appropriate fractions were combined and MeCN was removed in vacuo. To the residue was added aqueous Na2CO3 (10 mL) and EtOAc (30 mL). The organic phase was separated, dried over Na2SO4, filtered and concentrated to give a mixture of tert-butyl ((1S,2S,4S)-2-(2-(dimethylamino)acetamido)-4-(3-(trifluoromethyl)phenyl)-cyclohexyl)carbamate and tert-butyl ((1S,2S,4S)-2-(2-(dimethylamino)-N-methylacetamido)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)carbamate (46 mg, 0.10 mmol, 47% yield). LCMS (ESI) m/z: 458.3 [M+H]+.
The mixture of tert-butyl ((1S,2S,4S)-2-(2-(dimethylamino)-N-methylacetamido)-4-(3-(trifluoromethyl)-phenyl)cyclohexyl)carbamate and tert-butyl ((1S,2S,4S)-2-(2-(dimethylamino)-N-methylacetamido)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)carbamate (46 mg, 0.10 mmol) was dissolved in 1,4-Dioxane (0.5 mL) and to this solution was added 4M HCl in dioxanes (0.5 mL, 2 mmol) at room temperature. After 1 h, the reaction was concentrated to provide the crude deprotected amine HCl salts and used directly in the next step without further purification.
To the crude mixture of N-((1S,2S,5S)-2-amino-5-(3-(trifluoromethyl)phenyl)cyclohexyl)-2-(dimethylamino)acetamide hydrochloride and N-((1S,2S,5S)-2-amino-5-(3-(trifluoromethyl)-phenyl)cyclohexyl)-2-(dimethylamino)acetamide hydrochloride prepared above (41 mg, 0.10 mmol) was added DMF (0.5 mL), DIPEA (0.06 mL, 0.31 mmol), and 5-chloro-N-[(2,4-dimethoxyphenyl)methyl]-2,4-difluoro-N-pyrimidin-4-yl-benzenesulfonamide (95 mg, 0.21 mmol) and the mixture placed in a 60° C. bath. After 16 h, the mixture was cooled to room temperature and water (30 mL) was added. The product was extracted with EtOAc (150 mL), and the organic extract washed with water, followed by brine (15 mL). The organic layer was dried over Na2SO4, filtered and concentrated in vacuo. The residue obtained was purified by C18 reverse phase flash column chromatography (0-100% MeCN/10 mM aqueous ammonium bicarbonate) to give N-((1S,2S,5S)-2-((2-chloro-4-(N-(2,4-dimethoxybenzyl)-N-(pyrimidin-4-yl)sulfamoyl)-5-fluorophenyl)amino)-5-(3-(trifluoromethyl)phenyl)cyclohexyl)-2-(dimethylamino)-acetamide (32 mg, 0.0411 mmol, 39% yield). LCMS (ESI) m/z: 779.3 [M+H]+. N-((1S,2S,5S)-2-((2-chloro-4-(N-(2,4-dimethoxybenzyl)-N-(pyrimidin-4-yl)sulfamoyl)-5-fluorophenyl)amino)-5-(3-(trifluoromethyl)phenyl)cyclohexyl)-2-(dimethylamino)-N-methylacetamide (18 mg, 0.0227 mmol, 22% yield) was also obtained. LCMS (ESI) m/z: 793.2 [M+H]+.
Following the procedure described in Example 1 Step q and making non-critical variations as required to replace N-(2,4-dimethoxybenzyl)-4-((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)-cyclohexyl)-6-fluoro-3-oxo-N-(pyrimidin-4-yl)-3,4-dihydro-2H-benzo[b][1,4]oxazine-7-sulfonamide with N-((1S,2S,5S)-2-((2-chloro-4-(N-(2,4-dimethoxybenzyl)-N-(pyrimidin-4-yl)sulfamoyl)-5-fluorophenyl)-amino)-5-(3-(trifluoromethyl)phenyl)cyclohexyl)-2-(dimethylamino)acetamide, N-((1S,2S,5S)-2-((2-chloro-5-fluoro-4-(N-(pyrimidin-4-yl)sulfamoyl)phenyl)amino)-5-(3-(trifluoromethyl)phenyl)cyclohexyl)-2-(dimethylamino)acetamide was obtained LCMS (ESI) m/z: 629.1 [M+H]+. 1H NMR (500 MHz, d6-DMSO) δ 8.15 (s, 1H), 7.73 (d, J=9.0 Hz, 1H), 7.62-7.52 (m, 5H), 6.77 (d, J=11.9 Hz, 1H), 5.72 (s, 1H), 4.09-3.99 (d, J=8.6 Hz, 1H), 3.04 (q, J=7.2 Hz, 1H), 2.85 (t, J=12.0 Hz, 1H), 2.77 (d, J=15.3 Hz, 1H), 2.63 (dd, J=15.7, 8.6 Hz, 1H), 2.09-1.99 (m, 1H), 1.98 (s, 6H), 1.95-1.76 (dt, J=32.1, 9.9 Hz, 3H), 1.72-1.55 (m, 2H).
Following the procedure described in Example 1 Step s and making non-critical variations as required to replace N-(2,4-dimethoxybenzyl)-4-((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)-cyclohexyl)-6-fluoro-3-oxo-N-(pyrimidin-4-yl)-3,4-dihydro-2H-benzo[b][1,4]oxazine-7-sulfonamide with N-((1S,2S,5S)-2-((2-chloro-4-(N-(2,4-dimethoxybenzyl)-N-(pyrimidin-4-yl)sulfamoyl)-5-fluorophenyl)-amino)-5-(3-(trifluoromethyl)phenyl)cyclohexyl)-2-(dimethylamino)-N-methylacetamide, N-((1S,2S,5S)-2-((2-chloro-5-fluoro-4-(N-(pyrimidin-4-yl)sulfamoyl)phenyl)amino)-5-(3-(trifluoromethyl)phenyl)-cyclohexyl)-2-(dimethylamino)-N-methylacetamide formate was obtained as a white solid. LCMS (ESI) m/z: 643.2 [M+H]+. 1H NMR (500 MHz, d6-DMSO) δ 8.37 (s, 1H), 8.04 (s, 1H), 7.69-7.46 (m, 6H), 6.83-6.65 (m, 2H), 3.95-3.90 (m, 1H), 3.86-3.75 (s, 1H), 2.96-2.87 (m, 1H), 2.75 (m, 3H), 2.46 (s, 3H), 2.30 (s, 3H), 2.17-2.06 (m, 1H), 2.02-1.88 (m, 2H), 1.82-1.71 (m, 2H), 1.59-1.51 (m, 1H).
Following the procedure described in Example 28 Steps b-c and making non-critical variations as required to replace N,N-dimethylglycine with (S)-2-(((benzyloxy)carbonyl)amino)-3-methylbutanoic, benzyl ((S)-1-(((1S,2S,5S)-2-((2-chloro-4-(N-(2,4-dimethoxybenzyl)-N-(pyrimidin-4-yl)sulfamoyl)-5-fluorophenyl)amino)-5-(3-(trifluoromethyl)phenyl)cyclohexyl)amino)-3-methyl-1-oxobutan-2-yl)carbamate was obtained. LCMS (ESI) m/z: 927.3 [M+H]+. Also obtained was benzyl ((5)-1-(((1S,2S,5S)-2-((2-chloro-4-(N-(2,4-dimethoxybenzyl)-N-(pyrimidin-4-yl)sulfamoyl)-5-fluorophenyl)-amino)-5-(3-(trifluoromethyl)phenyl)cyclohexyl)(methyl)amino)-3-methyl-1-oxobutan-2-yl)carbamate. LCMS (ESI) m/z: 941.4 [M+H]+.
Following the procedure described in Example 1 Step s and making non-critical variations as required to replace N-(2,4-dimethoxybenzyl)-4-((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)-cyclohexyl)-6-fluoro-3-oxo-N-(pyrimidin-4-yl)-3,4-dihydro-2H-benzo[b][1,4]oxazine-7-sulfonamide with benzyl ((S)-1-(((1S,2S,5S)-2-((2-chloro-4-(N-(2,4-dimethoxybenzyl)-N-(pyrimidin-4-yl)sulfamoyl)-5-fluorophenyl)amino)-5-(3-(trifluoromethyl)phenyl)cyclohexyl)amino)-3-methyl-1-oxobutan-2-yl)carbamate, (S)-2-amino-N-((1S,2S,5S)-2-((2-chloro-5-fluoro-4-(N-(pyrimidin-4-yl)sulfamoyl)phenyl)-amino)-5-(3-(trifluoromethyl)phenyl)cyclohexyl)-3-methylbutanamide formate was obtained as a white solid. LCMS (ESI) m/z: 643.2 [M+H]+. 1H NMR (500 MHz, d6-DMSO) δ 8.57 (s, 1H), 8.29 (s, 1H), 7.69-7.54 (m, 4H), 7.08 (d, J=7.3 Hz, 1H), 6.88-6.96 (m, 2H), 4.14-4.19 (m, 1H), 4.12-3.95 (m, 2H), 2.91-2.99 (m, 1H), 2.76 (t, J=9.8 Hz, 1H), 2.22 (s, 6H), 1.97 (d, J=12.1 Hz, 1H), 1.90-1.62 (m, 5H).
Following the procedure described in Example 1 Step s and making non-critical variations as required to replace N-(2,4-dimethoxybenzyl)-4-((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)-cyclohexyl)-6-fluoro-3-oxo-N-(pyrimidin-4-yl)-3,4-dihydro-2H-benzo[b][1,4]oxazine-7-sulfonamide with benzyl ((S)-1-(((1S,2S,5S)-2-((2-chloro-4-(N-(2,4-dimethoxybenzyl)-N-(pyrimidin-4-yl)sulfamoyl)-5-fluorophenyl)amino)-5-(3-(trifluoromethyl)phenyl)cyclohexyl)(methyl)amino)-3-methyl-1-oxobutan-2-yl)carbamate, (S)-2-amino-N-((1S,2S,5S)-2-((2-chloro-5-fluoro-4-(N-(pyrimidin-4-yl)sulfamoyl)phenyl)-amino)-5-(3-(trifluoromethyl)phenyl)cyclohexyl)-N,3-dimethylbutanamide formate was obtained as a white solid. LCMS (ESI) m/z: 657.2 [M+H]+. 1H NMR (500 MHz, d6-DMSO) δ 8.28 (s, 1H), 7.93 (d, J=5.2 Hz, 1H), 7.69-7.55 (m, 5H), 6.69 (d, J=12.8 Hz, 1H), 6.55 (s, 1H), 5.41 (d, J=9.1 Hz, 1H), 4.74 (t, J=9.3 Hz, 1H), 4.07-3.81 (m, 2H), 2.96-2.80 (m, 2H), 2.10-1.52 (m, 7H), 1.12-0.77 (m, 6H).
Following the procedure described in Example 18 and making non-critical variations as required to replace 1-bromo-3-(1-(trifluoromethyl)cyclopropyl)benzene with 1-bromo-3-(1,1-difluoroethyl)benzene, the title compound was obtained as a white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.42 (s, 1H), 8.09 (s, 1H), 7.66 (d, J=7.2 Hz, 1H), 7.49 (s, 1H), 7.47-7.40 (m, 3H), 6.82 (d, J=13.2 Hz, 1H), 6.73 (d, J=5.6 Hz, 1H), 5.97 (d, J=7.2 Hz, 1H), 3.80-3.71 (m, 1H), 2.82-2.71 (m, 1H), 2.53-2.52 (m, 1H), 2.46 (s, 6H), 2.15-2.04 (m, 2H), 1.97 (t, J=18.8 Hz, 3H), 1.79-1.70 (m, 2H), 1.69-1.60 (m, 1H), 1.49-1.32 (m, 1H). LCMS (ESI) m/z: 568.1 [M+H]+.
Following the procedure described in Example 29 and making non-critical variations as required to replace 2-(dimethylamino)acetic acid with (S)-1-methylpyrrolidine-3-carboxylic acid, (S)—N-((1S,2S,5S)-2-((2-chloro-5-fluoro-4-(N-(pyrimidin-4-yl)sulfamoyl)phenyl)amino)-5-(3-(trifluoromethyl)phenyl)-cyclohexyl)-N,1-dimethylpyrrolidine-3-carboxamide was obtained. LCMS (ESI) m/z: 669.4, 671.3. [M+H]+. 1H NMR (500 MHz, d6-DMSO) δ 8.29-8.22 (m, 1H), 8.17 (s, 1H), 7.90 (d, J=5.8 Hz, 1H), 7.65 (s, 1H), 7.61 (d, J=6.6 Hz, 1H), 7.59-7.52 (m, 3H), 6.64 (dd, J=26.7, 12.9 Hz, 1H), 6.55-6.49 (m, 1H), 5.22 (d, J=8.3 Hz, 1H), 4.71 (td, J=11.6, 3.6 Hz, 1H), 2.79 (s, 3H), 2.64-2.62 (m, 1H), 2.25 (s, 2H).
Following the procedure described in Example 29 and making non-critical variations as required to replace 2-(dimethylamino)acetic acid with (R)-1-methylpyrrolidine-3-carboxylic acid, (R)—N-((1S,2S,5S)-2-((2-chloro-5-fluoro-4-(N-(pyrimidin-4-yl)sulfamoyl)phenyl)amino)-5-(3-(trifluoromethyl)phenyl)-cyclohexyl)-N,1-dimethylpyrrolidine-3-carboxamide was obtained. LCMS (ESI) m/z: 669.3, 671.3 [M+H]+. 1H NMR (500 MHz, d6-DMSO) δ 8.24 (d, J=6.2 Hz, 2H), 7.88 (d, J=6.0 Hz, 1H), 7.65 (s, 1H), 7.61 (d, J=7.2 Hz, 1H), 7.59-7.51 (m, 3H), 6.64 (dd, J=27.5, 12.9 Hz, 1H), 6.49 (t, J=5.0 Hz, 1H), 5.19 (d, J=8.3 Hz, 1H), 4.71 (t, J=11.2 Hz, 1H), 2.78 (s, 3H), 2.23 (s, 3H).
trans-Cyclohex-4-ene-1,2-diamine dihydrochloride (1000 mg, 5.4 mmol) was dissolved in methanol (8 mL) and water (4 mL). Triethyl amine (2.95 mL, 21.6 mmol) was added followed by di-tert-butyl dicarbonate (2.95 g, 13.5 mmol). The reaction was stirred at rt for 1 h then diluted with EtOAc (30 mL) and water (10 mL). The organic layer was separated, dried over Na2SO4 and concentrated to provide di-tert-butyl trans-cyclohex-4-ene-1,2-diyldicarbamate (1700 mg, 99% yield) which was used directly in the next step without further purification. LCMS (ESI) m/z: 313.4 [M+H]+. 1H NMR (400 MHz, CDCl3) δ 5.65-5.48 (m, 2H), 4.87 (s, 2H), 3.73-3.52 (m, 2H), 2.48 (d, J=16.7 Hz, 2H), 2.05-1.90 (m, 2H), 1.43 (s, 18H).
Di-tert-butyl trans-cyclohex-4-ene-1,2-diyldicarbamate (1680 mg, 5.38 mmol) was dissolved in THF (25 mL) and the mixture was cooled to 0° C. 2 M BH3.DMS complex in THF (4.03 mL, 8.07 mmol) was slowly added. The reaction was slowly warmed to rt and stirred under N2 overnight. After 16 h, 1N NaOH (10 mL) was slowly added followed by addition of 30 wt % aqueous hydrogen peroxide (3 mL). The mixture was stirred at rt for 2 h then diluted with EtOAc (40 mL) and water (20 mL). The organic layer was separated, dried over Na2SO4, filtered and the solvent was removed in vacuo. The crude alcohol thus obtained was then dissolved in DCM (30 mL) and to the solution was added Dess Martin reagent (2964 mg, 6.99 mmol) portionwise. The reaction was stirred at rt for 3 h then diluted with DCM (30 mL) and saturated Na2CO3 (30 mL). The organic layer was separated, dried over Na2SO4, filtered and the solvent was removed in vacuo. The crude was purified by flash colunm chromatography through Si gel (0-70% EtOAc/Hexanes) to provide di-tert-butyl (trans-4-oxocyclohexane-1,2-diyl)dicarbamate (1350 mg, 80% yield). LCMS (ESI) m/z: 329.4 [M+H]+. 1H NMR (400 MHz, CDCl3) δ 5.08 (d, J=7.5 Hz, 1H), 5.04 (d, J=8.0 Hz, 1H), 3.84-3.62 (m, 2H), 2.71 (dd, J=14.3, 3.5 Hz, 1H), 2.39 (dd, J=10.5, 4.8 Hz, 2H), 2.36-2.26 (m, 1H), 2.26-2.16 (m, 1H), 1.60-1.48 (m, 1H), 1.45-1.36 (m, 18H).
Magnesium (182 mg, 7.6 mmol) was suspended in THF (8 mL, anhydrous) and to the suspension was added iodine (11 mg) under N2. The suspension was briefly heated with a heat gun until gently refluxing and stirred for 30 sec. To the suspension was added 3-bromobenzotrifluoride (0.64 mL, 4.57 mmol) and the resulting mixture was stirred for 1 h then added to a solution of di-tert-butyl (trans-4-oxocyclohexane-1,2-diyl)dicarbamate (500 mg, 1.52 mmol) in THF (8 mL) at −78° C. quickly. The resulting solution was stirred at −78° C. for 1 hour then quenched with saturated NH4Cl (2 mL) and diluted with EtOAc (10 mL). The phases were separated and the organic extract dried (Na2SO4) and concentrated in vacuo. The crude material was purified by flash column chromatography through Si gel (0-50% EtOAc/hexanes) to provide rac-di-tert-butyl ((1S,2S,4R)-4-hydroxy-4-(3-(trifluoromethyl)phenyl)cyclohexane-1,2-diyl)dicarbamate (81 mg, 11% yield). LCMS (ESI) m/z: 497.2[M+H]+. Also obtained was rac-di-tert-butyl ((1R,2R,4S)-4-hydroxy-4-(3-(trifluoromethyl)phenyl)cyclohexane-1,2-diyl)dicarbamate (92 mg, 12% yield). LCMS (ESI) m/z: 497.2 [M+H]+. Relative stereochemistry was arbitrarily assigned to each isomer.
Rac-di-tert-butyl ((1S,2S,4R)-4-hydroxy-4-(3-(trifluoromethyl)phenyl)cyclohexane-1,2-diyl)dicarbamate (81 mg, 0.17 mmol) was dissolved in 1,4-dioxane (0.50 mL) and to the solution was added 4M HCl in dioxane (0.5 mL, 1.75 mmol). The reaction was stirred at rt for 1 h then the solvent was removed in vacuo to provide crude rac-(1R,3S,4S)-3,4-diamino-1-(3-(trifluoromethyl)phenyl)cyclohexanol dihydrochloride (59 mg, 99% yield) as a mixture of enantiomers which was used without further purification in the next step. LCMS (ESI) m/z: 275.1 [M+H]+
A flask was charged with rac-(1R,3S,4S)-3,4-diamino-1-(3-(trifluoromethyl)phenyl)cyclohexanol dihydrochloride (65 mg, 0.24 mmol), DMF (1 mL), DIPEA (0.08 mL, 0.47 mmol) and 5-chloro-N-(2,4-dimethoxybenzyl)-2,4-difluoro-N-(pyrimidin-4-yl)benzenesulfonamide (162 mg, 0.36 mmol) and the mixture stirred at rt. After 18 h, the reaction was diluted with water (10 mL) and EtOAc (30 mL). The phases were separated and the organic extract was washed with water followed by brine (5 mL). The organic layer was dried over Na2SO4, filtered and the solvent was removed in vacuo. The crude was dissolved in methanol (2 mL) and to this solution was added 37% w/w formaldehyde in H2O (0.29 mL, 3.55 mmol) and sodium cyanoborohydride (110 mg, 1.77 mmol) and the mixture stirred at rt. After 10 min, the reaction mixture was diluted with water (10 mL) and EtOAc (30 mL) and the phases were separated. The organic extract was dried over Na2SO4, filtered and concentrated in vacuo. The crude material was purified by semi-prep HPLC-MS (CSH column, 55-75% MeCN/10 mM aqueous ammonium bicarondate, pH=10) to provide rac-4-(4/S,2S,4R)-2-amino-4-hydroxy-4-(3-(trifluoromethyl)phenyl)cyclohexyl)amino)-5-chloro-N-(2,4-dimethoxybenzyl)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide (36 mg, 27% yield).
Rac-4-(((1S,2S,4R)-2-amino-4-hydroxy-4-(3-(trifluoromethyl)phenyl)cyclohexyl)amino)-5-chloro-N-(2,4-dimethoxybenzyl)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide (36 mg) was separated using chiral HPLC (ChiralPak IB, 5 μm, 20×250 mm, 15 mL/min, 4:4:92 MeOH:DCM:hexanes+0.1% DEA, 15 ml/min) to afford: 4-(((1S,2S,4R)-2-amino-4-hydroxy-4-(3-(trifluoromethyl)phenyl)cyclohexyl)amino)-5-chloro-N-(2,4-dimethoxybenzyl)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide (20 mg, peak-1) as a white solid and & 4-(((1R,2R,4S)-2-amino-4-hydroxy-4-(3-(trifluoromethyl)phenyl)cyclohexyl)amino)-5-chloro-N-(2,4-dimethoxybenzyl)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide (13 mg, peak-2) as a white solid. Absolute configuration was arbitrarily assigned to each enantiomer. LCMS (ESI) m/z: 738.3 [M+H]+.
Following the procedure described in Example 1 Step s and making non-critical variations as required to replace N-(2,4-dimethoxybenzyl)-4-((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)-cyclohexyl)-6-fluoro-3-oxo-N-(pyrimidin-4-yl)-3,4-dihydro-2H-benzo[b][1,4]oxazine-7-sulfonamide with 4-(((1S,2S,4R)-2-Amino-4-hydroxy-4-(3-(trifluoromethyl)phenyl)cyclohexyl)amino)-5-chloro-N-(2,4-dimethoxybenzyl)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide, 5-chloro-4-(((1S,2S,4R)-2-(dimethylamino)-4-hydroxy-4-(3-(trifluoromethyl)phenyl)cyclohexyl)amino)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide was obtained. The stereochemistry was assigned arbitrarily for the mixture of stereoisomers. LCMS (ESI) m/z: 588.3 [M+H]+. 1H NMR (500 MHz, d6-DMSO6) δ 8.40 (s, 1H), 8.08 (d, J=5.5 Hz, 1H), 7.87 (s, 1H), 7.85-7.82 (m, 1H), 7.67 (d, J=7.4 Hz, 1H), 7.63-7.59 (m, 2H), 6.79 (d, J=12.9 Hz, 1H), 6.72 (d, J=5.7 Hz, 1H), 5.99 (d, J=5.7 Hz, 1H), 5.43 (s, 1H), 3.88-3.53 (m, 2H), 2.42 (s, 6H), 2.14-2.05 (m, 1H), 1.99-1.84 (m, 3H), 1.75 (q, J=9.9 Hz, 1H), 1.61 (d, J=13.4 Hz, 1H).
Following the procedure described in Example 1 Step s and making non-critical variations as required to replace N-(2,4-dimethoxybenzyl)-4-((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)-cyclohexyl)-6-fluoro-3-oxo-N-(pyrimidin-4-yl)-3,4-dihydro-2H-benzo[b][1,4]oxazine-7-sulfonamide with 4-(((1R,2R,4S)-2-amino-4-hydroxy-4-(3-(trifluoromethyl)phenyl)cyclohexyl)amino)-5-chloro-N-(2,4-dimethoxybenzyl)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide, 5-chloro-4-(((1R,2R,4S)-2-(dimethylamino)-4-hydroxy-4-(3-(trifluoromethyl)phenyl)cyclohexyl)amino)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide formate was obtained. The stereochemistry was assigned arbitrarily for the mixture of stereoisomers. LCMS (ESI) m/z: 588.3 [M+H]+. 1H NMR (500 MHz, d6-DMSO) δ 8.40 (s, 1H), 8.07 (d, 1H), 7.87 (s, 1H), 7.86-7.82 (m, 1H), 7.67 (d, J=7.4 Hz, 1H), 7.63-7.59 (m, 2H), 6.79 (d, J=12.7 Hz, 1H), 6.72 (d, J=5.3 Hz, 1H), 5.99 (s, 1H), 5.43 (s, 1H), 3.86-3.56 (m, 2H), 2.42 (s, 6H), 2.09 (dd, J=13.2, 9.4 Hz, 1H), 1.99-1.84 (m, 3H), 1.81-1.69 (m, 1H), 1.61 (d, J=13.9 Hz, 1H).
Following the procedures described in Example 35 Steps d-e and making non-critical variations as required to replace rac-di-tert-butyl ((1S,2S,4R)-4-hydroxy-4-(3-(trifluoromethyl)phenyl)-cyclohexane-1,2-diyl)dicarbamate with rac-di-tert-butyl ((1R,2R,4S)-4-hydroxy-4-(3-(trifluoromethyl)phenyl)cyclohexane-1,2-diyl)dicarbamate, rac-4-(((1S,3S,4S)-2-amino-4-hydroxy-4-(3-(trifluoromethyl)phenyl)cyclohexyl)amino)-5-chloro-N-(2,4-dimethoxybenzyl)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide was obtained.
Rac-4-(((1S,3S,4S)-2-amino-4-hydroxy-4-(3-(trifluoromethyl)phenyl)cyclohexyl)amino)-5-chloro-N-(2,4-dimethoxybenzyl)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide was separated using chiral HPLC (ChiralPak IB, 5 μm, 20×250 mm, 15 mL/min, 4:4:92 MeOH:DCM:hexanes+0.1% DEA, 15 ml/min) to afford: 4-(((1S,3S,4S)-2-amino-4-hydroxy-4-(3-(trifluoromethyl)-phenyl)cyclohexyl)amino)-5-chloro-N-(2,4-dimethoxybenzyl)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide (peak-1) as a white solid; and 4-(((1R,3R,4R)-2-amino-4-hydroxy-4-(3-(trifluoromethyl)phenyl)cyclohexyl)amino)-5-chloro-N-(2,4-dimethoxybenzyl)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide (peak-2) as a white solid. Absolute configuration was arbitrarily assigned to each enantiomer. LCMS (ESI) m/z: 738.3[M+H]+.
Following the procedure described in Example 1 Step s and making non-critical variations as required to replace N-(2,4-dimethoxybenzyl)-4-((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)-cyclohexyl)-6-fluoro-3-oxo-N-(pyrimidin-4-yl)-3,4-dihydro-2H-benzo[b][1,4]oxazine-7-sulfonamide with 4-(((1S,2S,4S)-2-amino-4-hydroxy-4-(3-(trifluoromethyl)phenyl)cyclohexyl)amino)-5-chloro-N-(2,4-dimethoxybenzyl)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide, 5-chloro-4-(((1S,2S,4S)-2-(dimethylamino)-4-hydroxy-4-(3-(trifluoromethyl)phenyl)cyclohexyl)amino)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide was obtained. The stereochemistry was assigned arbitrarily for the mixture of stereoisomers. LCMS (ESI) m/z: 588.3 [M+H]+. 1H NMR (500 MHz, d6-DMSO) δ 8.41 (s, 1H), 8.10 (d, J=4.2 Hz, 1H), 7.86-7.74 (m, 2H), 7.64 (dt, J=10.5, 8.3 Hz, 3H), 6.80 (d, J=12.9 Hz, 1H), 6.73 (d, J=5.3 Hz, 1H), 5.76 (d, J=5.8 Hz, 1H), 5.67-5.29 (br s, 1H), 3.68 (s, 1H), 2.74 (s, 1H), 2.64 (d, J=8.2 Hz, 1H), 2.42 (d, J=11.7 Hz, 1H), 2.33 (s, 6H), 2.04-1.95 (m, 1H), 1.86 (td, J=13.6, 3.4 Hz, 1H), 1.76 (t, J=12.6 Hz, 1H), 1.06 (q, J=10.7 Hz, 1H)
Following the procedure described in Example 1 Step s and making non-critical variations as required to replace N-(2,4-dimethoxybenzyl)-4-((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)-cyclohexyl)-6-fluoro-3-oxo-N-(pyrimidin-4-yl)-3,4-dihydro-2H-benzo[b][1,4]oxazine-7-sulfonamide with 4-(((1R,2R,4R)-2-amino-4-hydroxy-4-(3-(trifluoromethyl)phenyl)cyclohexyl)amino)-5-chloro-N-(2,4-dimethoxybenzyl)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide, 5-chloro-4-(((1R,2R,4R)-2-(dimethylamino)-4-hydroxy-4-(3-(trifluoromethyl)phenyl)cyclohexyl)amino)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide formate was obtained. The stereochemistry was assigned arbitrarily for the mixture of stereoisomers. LCMS (ESI) m/z: 588.3 [M+H]+. 1H NMR (500 MHz, d6-DMSO) δ 8.43 (s, 1H), 8.14-8.06 (m, 1H), 7.86-7.74 (m, 2H), 7.73-7.57 (m, 3H), 6.82 (d, J=13.0 Hz, 1H), 6.75 (d, J=5.3 Hz, 1H), 5.78 (d, J=6.4 Hz, 1H), 5.52 (s, 1H), 3.79-3.64 (m, 1H), 2.76 (s, 1H), 2.65 (d, J=12.2 Hz, 1H), 2.42 (d, J=12.6 Hz, 1H), 2.35 (s, 6H), 2.03-1.94 (m, 1H), 1.86 (td, J=13.6, 3.3 Hz, 1H), 1.76 (t, J=12.5 Hz, 1H), 1.07 (q, J=11.0 Hz, 1H).
To a solution of tert-butyl ((1S,2S,4S)-2-(methylamino)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)-carbamate prepared in Example 29 (102 mg, 0.27 mmol) in DCM (1.4 mL) was added triethylamine (0.15 mL, 1.1 mmol) and benzyl chloroformate (42.8 uL, 0.30 mmol). The resulting mixture was stirred at room temperature for 3 hours then diluted with DCM (50 mL), washed with saturated aqueous NaHCO3(20 mL), dried over Na2SO4, filtered and concentrated. The crude product was purified by flash column chromatography through Si gel (MeOH/DCM) to provide benzyl ((1S,2S,5S)-2-((tert-butoxycarbonyl)-amino)-5-(3-(trifluoromethyl)phenyl)cyclohexyl)(methyl)carbamate (80 mg, 58% yield). LCMS (ESI) m/z: 407.2 [M+H]+.
To benzyl ((1S,2S,5S)-2-((tert-butoxycarbonyl)amino)-5-(3-(trifluoromethyl)phenyl)-cyclohexyl)-(methyl)carbamate (60 mg, 0.12 mmol) was added HCl 4 N in dioxane (1 mL, 4.0 mmol) and the solution was stirred at room temperature for 60 minutes then was concentrated to dryness. To the flask containing the crude Boc deprotected product was added DMF (1 mL) followed by DIPEA (105 uL, 0.59 mmol) and 5-chloro-N-(2,4-dimethoxybenzyl)-2,4-difluoro-N-(pyrimidin-4-yl)benzenesulfonamide (54 mg, 0.12 mmol). The reaction was stirred at 65° C. for 18 hours then diluted with water and extracted with EtOAc. The organic extract was separated and washed with water then aqueous saturated brine solution. The organic layer was dried over Na2SO4, filtered and concentrated to provide benzyl ((1S,2S,5S)-2-((2-chloro-4-(N-(2,4-dimethoxybenzyl)-N-(pyrimidin-4-yl)sulfamoyl)-5-fluorophenyl)amino)-5-(3-(trifluoromethyl)phenyl)cyclohexyl)(methyl)carbamate (90 mg, 90% yield) which was used directly in the next step without further purification.
Palladium on carbon (30 mg) was suspended in IPA (0.80 mL) and to this suspension was added benzyl ((1S,2S,5S)-2-((2-chloro-4-(N-(2,4-dimethoxybenzyl)-N-(pyrimidin-4-yl)sulfamoyl)-5-fluorophenyl-)amino)-5-(3-(trifluoromethyl)phenyl)cyclohexyl)(methyl)carbamate prepared above (90 mg, 0.11 mmol) as a solution in EtOAc (0.2 mL) followed by ammonium formate (337 mg, 5.34 mmol). The mixture was stirred at room temperature for 30 minutes then filtered through Celite and concentrated. The residue obtained was dissolved in EtOAc (50 mL) and 10% aqueous NaHCO3(30 mL) and the organic layer was separated, dried over Na2SO4, filtered and concentrated. The crude product was purified by flash column chromatography through Si gel (MeOH/DCM) to provide 5-chloro-N-(2,4-dimethoxybenzyl)-2-fluoro-4-(((1S,2S,4S)-2-(methylamino)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)amino)-N-(pyrimidin-4-yl)benzenesulfonamide (22 mg, 29% yield). LCMS (ESI) m/z: 708.3, 710.3 [M+H]+.
To 5-chloro-N-(2,4-dimethoxybenzyl)-2-fluoro-4-(((1S,2S,4S)-2-(methylamino)-4-(3-(trifluoromethyl)-phenyl)cyclohexyl)amino)-N-(pyrimidin-4-yl)benzenesulfonamide (20 mg, 0.03 mmol) in DMF (0.3 mL) was added 1-methylazetidine-3-carboxylic acid (5 mg, 0.04 mmol) followed by N,N-diisopropylethylamine (20 uL, 0.11 mmol) and HATU (13 mg, 0.03 mmol). The reaction mixture was stirred at room temperature for 18 hours then diluted with water and EtOAc. The organic layer was separated and washed with saturated aqueous NaHCO3, then aqueous saturated brine solution, dried over Na2SO4, filtered and concentrated to provide N-((1S,2S,5S)-2-((2-chloro-4-(N-(2,4-dimethoxybenzyl)-N-(pyrimidin-4-yl)sulfamoyl)-5-fluorophenyl)amino)-5-(3-(trifluoromethyl)phenyl)cyclohexyl)-N,1-dimethylazetidine-3-carboxamide which was used directly in the next step without further purification.
In a flask containing N-((1S,2S,5S)-2-((2-chloro-4-(N-(2,4-dimethoxybenzyl)-N-(pyrimidin-4-yl)sulfamoyl)-5-fluorophenyl)amino)-5-(3-(trifluoromethyl)phenyl)cyclohexyl)-N,1-dimethylazetidine-3-carboxamide prepared above (22 mg, 0.03 mmol) was added formic acid (0.1 mL, 2.65 mmol) and the reaction was stirred at room temperature for 16 hours then concentrated to dryness. The crude was directly purified by C18 reverse phase flash chromatography (10-60% MeCN/10 mM aqueous ammonium bicarbonate, pH=10). Appropriate fractions combined and lyophilized to provide N-((1S,2S,5S)-2-((2-chloro-5-fluoro-4-(N-(pyrimidin-4-yl)sulfamoyl)phenyl)amino)-5-(3-(trifluoromethyl)phenyl)cyclohexyl)-N,1-dimethylazetidine-3-carboxamide (3.5 mg, 20% yield) as a white solid. LCMS (ESI) m/z: 655.4, 657.4 [M+H]+. 1H NMR (500 MHz, d6-DMSO) δ 8.44-8.31 (m, 1H), 8.03 (d, J=6.6 Hz, 1H), 7.70-7.50 (m, 4H), 6.83-6.58 (m, 2H), 5.52 (d, J=158.4 Hz, 1H), 4.68 (t, J=12.5 Hz, 1H), 4.15-3.56 (m, 6H), 2.99-2.74 (m, 2H), 2.73-2.62 (m, 2H), 2.19-2.06 (m, 1H), 2.06-1.85 (m, 2H), 1.85-1.64 (m, 3H), 1.64-1.47 (m, 1H).
To a solution of tert-butyl ((1S,2S,4S)-2-amino-4-(3-(trifluoromethyl)phenyl)-cyclohexyl)-carbamate (500 mg, 1.4 mmol) in MeOH (12 mL) was added cyclobutanone (293 mg, 4.19 mmol), acetic acid (0.16 mL, 2.79 mmol) and sodium cyanoborohydride (263 mg, 4.19 mmol). The mixture was stirred at room temperature for 2 h. EtOAc (100 mL) was added and washed with sat. aq. NaHCO3(50 mL). The organic layer was dried over anhydrous Na2SO4, filtered and concentrated in vacuo. The crude residue was purified by silica gel chromatography (solvent gradient: 0-80% EtOAc in petroleum ether) to give the title compound (0.45 g, 78%) as colorless oil. 1H NMR (400 MHz, CDCl3) δ 7.49-7.35 (m, 4H), 4.58 (s, 1H), 3.37-3.27 (m, 2H), 2.70-2.59 (m, 1H), 2.49-2.38 (m, 1H), 2.30-2.15 (m, 4H), 1.95-1.85 (m, 1H), 1.83-1.61 (m, 6H), 1.49 (s, 9H), 1.46-1.32 (m, 2H).
To a solution of tert-butyl ((1S,2S,4S)-2-(cyclobutylamino)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)-carbamate (450 mg, 1.09 mmol) in MeOH (10 mL) was added paraformaldehyde (98 mg, 3.27 mmol), acetic acid (0.12 mL, 2.18 mmol) and sodium cyanoborohydride (206 mg, 3.27 mmol). The mixture was stirred at room temperature for 16 h. EtOAc (100 mL) was added and washed with water (50 mL). The organic layer was dried over anhydrous Na2SO4, filtered and concentrated in vacuo. The crude residue was purified by silica gel chromatography (solvent gradient: 0-70% EtOAc in petroleum ether) to give the title compound (0.40 g, 86%) as colorless oil.
To a solution of tert-butyl ((1S,2S,4S)-2-(cyclobutyl(methyl)amino)-4-(3-(trifluoromethyl)phenyl)-cyclohexyl)carbamate (400 mg, 0.94 mmol) in DCM (10 mL) was added TFA (0.5 mL, 6.73 mmol). The mixture was stirred at room temperature for 2 h. The mixture was concentrated in vacuo to give the title compound (0.3 g, crude) as light yellow oil that required no further purification. LCMS (ESI) m/z: 327.2 [M+H]+.
To a solution of (1S,2S,5S)—N1-cyclobutyl-N1-methyl-5-(3-(trifluoromethyl)phenyl)cyclohexane-1,2-diamine (100 mg, 0.31 mmol) in DMF (4 mL) was added N,N-diisopropylethylamine (0.51 mL, 3.06 mmol) and N-(2,4-dimethoxybenzyl)-2,4,5-trifluoro-N-(pyrimidin-4-yl)benzenesulfonamide (162 mg, 0.37 mmol). The mixture was heated to 70° C. for 16 h. After cooling to room temperature, EtOAc (100 mL) was added and washed with brine (20 mL×3). The organic layer was dried over anhydrous Na2SO4, filtered and concentrated in vacuo. The crude residue was purified by Prep-TLC (EtOAc/petroleum ether=1:1) to give the title compound (100 mg, 44%) as yellow oil. LCMS (ESI) m/z: 746.3 [M+H]+.
A mixture of 4-(((1S,2S,4S)-2-(cyclobutyl(methyl)amino)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)-amino)-N-(2,4-dimethoxybenzyl)-2,5-difluoro-N-(pyrimidin-4-yl)benzenesulfonamide (100 mg, 0.13 mmol) and formic acid (1 mL) was stirred at room temperature for 4 h. The mixture was concentrated in vacuo. The crude residue was purified by reverse phase chromatography (acetonitrile 22-52%/0.225% formic acid in water) to give the title compound (20 mg, 25%) as a white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.48 (s, 1H), 8.19-8.15 (d, J=6.0 Hz, 1H), 8.14 (s, 1H), 7.64-7.53 (m, 4H), 7.50-7.42 (m, 1H), 6.86-6.72 (m, 2H), 6.10-5.98 (m, 1H), 3.45-3.42 (m, 1H), 3.02-2.96 (m, 1H), 2.80-2.72 (m, 1H), 2.53-2.51 (m, 1H), 2.17 (s, 3H), 2.12-2.07 (m, 1H), 2.04-1.98 (m, 1H), 1.95-1.87 (m, 3H), 1.78-1.69 (m, 2H), 1.68-1.47 (m, 4H), 1.44-1.35 (m, 1H). LCMS (ESI) m/z: 596.3 [M+H]+.
Following the procedure described in Example 40 and making non-critical variations as required to replace cyclobutanone and N-(2,4-dimethoxybenzyl)-2,4,5-trifluoro-N-(pyrimidin-4-yl)benzene-sulfonamide with 2-((tert-butyldimethylsilyl)oxy)acetaldehyde and 5-chloro-N-[(2,4-dimethoxy-phenyl)methyl]-2,4-difluoro-N-pyrimidin-4-yl-benzenesulfonamide, the title compound was obtained as a white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.49 (s, 1H), 8.18 (d, J=6.4 Hz, 1H), 7.67 (d, J=7.6 Hz, 1H), 7.60-7.50 (m, 4H), 6.84 (d, J=6.4 Hz, 1H), 6.73 (d, J=13.2 Hz, 1H), 6.07-6.01 (m, 1H), 3.60-3.50 (m, 2H), 3.46-3.43 (m, 2H), 3.08-2.98 (m, 1H), 2.84-2.73 (m, 1H), 2.66-2.61 (m, 2H), 2.28 (s, 3H), 2.15-2.12 (m, 1H), 2.00-1.97 (m, 1H), 1.72-1.67 (m, 2H), 1.64-1.55 (m, 1H), 1.42-1.25 (m, 1H). LCMS (ESI) m/z: 602.1 [M+H]+.
Following the procedure described in Example 41 and making non-critical variations as required to replace 2-((tert-butyldimethylsilyl)oxy)acetaldehyde with benzyl 3-oxoazetidine-1-carboxylate, the title compound was obtained as a white solid. LCMS (ESI) m/z: 897.3 [M+H]+.
To a solution of benzyl 3-(((1S,2S,5S)-2-((2-chloro-4-(N-(2,4-dimethoxybenzyl)-N-(pyrimidin-4-yl)sulfamoyl)-5-fluorophenyl)amino)-5-(3-(trifluoromethyl)phenyl)cyclohexyl)-(methyl)amino)azetidine-1-carboxylate (310 mg, 0.35 mmol) in EtOAc (10 mL) was added 20% Pd(OH)2/C (121 mg, 0.17 mmol). The mixture was stirred at room temperature for 6 h under hydrogen atmosphere. The mixture was filtered and concentrated in vacuo. The crude residue was purified by Prep-TLC (DCM/MeOH=7:1) to give the title compound (157 mg, 60%) as a brown solid. LCMS (ESI) m/z: 763.3 [M+H]+.
A mixture of 4-(((1S,2S,4S)-2-(azetidin-3-yl(methyl)amino)-4-(3-(trifluoromethyl)phenyl)-cyclohexyl)amino)-5-chloro-N-(2,4-dimethoxybenzyl)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide (192 mg, 0.25 mmol) and formic acid (5 mL) was stirred at room temperature for 2 h. The mixture was concentrated in vacuo. The crude residue was purified by reverse phase chromatography (acetonitrile 25-45%/0.225% formic acid in water) to give the title compound (98 mg, 64%) as a white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.33 (s, 1H), 7.98 (d, J=6.0 Hz, 1H), 7.64-7.49 (m, 5H), 6.70-6.59 (m, 2H), 5.64 (d, J=6.4 Hz, 1H), 4.00-3.80 (m, 4H), 3.56-3.54 (m, 1H), 2.91-2.81 (m, 1H), 2.80-2.69 (m, 1H), 2.54-2.52 (m, 1H), 2.18 (s, 3H), 2.12-2.03 (m, 1H), 1.83-1.67 (m, 3H), 1.66-1.54 (m, 1H), 1.47-1.32 (m, 1H). LCMS (ESI) m/z: 613.2 [M+H]+.
Following the procedure described in Example 4 and making non-critical variations as required to replace 1-(3,4-dichlorophenyl)ethanone with 1-(3-cyclopropoxyphenyl)ethanone, the title compound was obtained as a white solid. 1H NMR (400 MHz, CDCl3) δ 8.78 (s, 1H), 8.41 (d, J=6.0 Hz, 1H), 7.78 (d, J=7.2 Hz, 1H), 7.26-7.23 (m, 2H), 6.99-6.96 (m, 1H), 6.90-6.83 (m, 2H), 6.32 (d, J=12.4 Hz, 1H), 6.17 (s, 1H), 3.79-3.69 (m, 1H), 3.15-3.06 (m, 2H), 2.78-2.60 (m, 1H), 2.43 (s, 6H), 2.42-2.32 (m, 1H), 2.22-2.12 (m, 1H), 2.05-1.94 (m, 1H), 1.71-1.52 (m, 2H), 1.48-1.37 (m, 1H), 0.81-0.75 (m, 4H). LCMS (ESI) m/z: 560.1 [M+H]+.
Following the procedure described in Example 4 and making non-critical variations as required to replace 1-(3,4-dichlorophenyl)ethanone with 1-(3-(oxetan-3-yl)phenyl)ethanone, the title compound was obtained as a white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.41 (s, 1H), 8.08 (d, J=4.4 Hz, 1H), 7.67 (d, J=7.2 Hz, 1H), 7.36-7.29 (m, 2H), 7.25 (d, J=7.6 Hz, 1H), 7.19 (d, J=7.6 Hz, 1H), 6.84 (d, J=12.8 Hz, 1H), 6.71 (d, J=5.6 Hz, 1H), 5.97 (d, J=6.8 Hz, 1H), 4.97-4.90 (m, 2H), 4.66-4.60 (m, 2H), 4.29-4.19 (m, 1H), 3.85-3.67 (m, 1H), 3.22-3.05 (m, 1H), 2.75-2.68 (m, 1H), 2.50 (s, 6H), 2.13-2.03 (m, 2H), 1.77-1.60 (m, 3H), 1.45-1.35 (m, 1H). LCMS (ESI) m/z: 560.3 [M+H]+.
To a solution of 4-(((1S,2S,4S)-2-(azetidin-3-yl(methyl)amino)-4-(3-(trifluoromethyl)phenyl)-cyclohexyl)amino)-5-chloro-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide (50 mg, 0.08 mmol) in MeOH (5 mL) was added paraformaldehyde (3.7 mg, 0.12 mmol), acetic acid (0.01 mL, 0.16 mmol) and sodium cyanoborohydride (26 mg, 0.41 mmol). The mixture was heated to 40° C. for 16 h. The reaction was concentrated in vacuo. The crude residue was purified by reverse phase chromatography (acetonitrile 15-65%/0.225% formic acid in water) to give the title compound (29 mg, 55%) as a white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.36 (s, 1H), 8.02 (d, J=6.0 Hz, 1H), 7.67-7.48 (m, 5H), 6.72-6.61 (m, 2H), 5.70 (d, J=6.4 Hz, 1H), 4.00-3.62 (m, 3H), 3.51-3.50 (m, 1H), 2.88-2.69 (m, 3H), 2.66 (s, 3H), 2.52-2.51 (m, 1H), 2.12 (s, 3H), 2.11-2.03 (m, 1H), 1.84-1.66 (m, 3H), 1.65-1.52 (m, 1H), 1.49-1.34 (m, 1H). LCMS (ESI) m/z: 627.3 [M+H]+.
To a solution of tert-butyl N-[(1S,2S,4S)-2-amino-4-[3-(trifluoromethyl)phenyl]cyclohexyl]-carbamate prepare in Example 1 (600 mg, 1.67 mmol) in MeCN (6.70 mL) was added 1,4-dibromobutane (0.24 mL, 2.01 mmol), followed by triethylamine (0.70 mL, 5.02 mmol). The reaction mixture was stirred at 80° C. for 16 h then diluted with ethyl acetate (10 mL) and saturated aqueous NaHCO3(20 mL). The phases were separated and the aqueous phase was extracted again with ethyl acetate (2×20 mL), the organic extracts were combined and dried over Na2SO4, filtered and evaporated under reduced pressure. The crude product was purified by flash column chromatography through Si gel (MeOH/DCM) to provide tert-butyl ((1S,2S,4S)-2-(pyrrolidin-1-yl)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)carbamate (310 mg, 45%). LCMS (ESI) m/z: 413.2 [M+H]+.
To tert-butyl ((1S,2S,4S)-2-(pyrrolidin-1-yl)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)carbamate (310 mg, 0.751 mmol) was added HCl 4 Nin dioxane (2.0 mL). The solution was stirred at room temperature for 60 minutes and then concentrated to dryness to afford crude (1S,2S,4S)-2-(pyrrolidin-1-yl)-4-(3-(trifluoromethyl)phenyl)cyclohexanamine hydrochloride which was used directly in the next step.
To a flask containing crude (1S,2S,4S)-2-(pyrrolidin-1-yl)-4-(3-(trifluoromethyl)phenyl)-cyclohexanamine hydrochloride (260 mg, 0.75 mmol) was added DMF (3.0 mL) followed by diisopropylethylamine (397 uL, 2.24 mmol) and 5-bromo-N-(2,4-dimethoxybenzyl)-2,4-difluoro-N-(pyrimidin-4-yl)benzene-sulfonamide (522 mg, 1.04 mmol) prepared in Example 1. The reaction was stirred at 25° C. for 18 h and then stopped by the addition of water (10 mL). The product was extracted with ethylacetate (2×20 mL). The organic layer was separated, washed with water (30 mL), brine (30 mL), dried over Na2SO4, filtered and concentrated. The crude product was purified by flash column chromatography through Si gel (EtOAc/Hexanes) to provide 5-bromo-N-(3,5-dimethoxybenzyl)-2-fluoro-N-(pyrimidin-4-yl)-4-(((1S,2S,4S)-2-(pyrrolidin-1-yl)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)amino)benzenesulfonamide (244 mg, 41% yield). LCMS (ESI) m/z: 792.2/795.2. [M+H]+.
Following the procedure described in Example 1 Step q and making non-critical variation as required to replace 5-bromo-N-(2,4-dimethoxybenzyl)-4-(((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)-phenyl)cyclohexyl)amino)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide with 5-bromo-N-[(2,4-dimethoxyphenyl)methyl]-2-fluoro-N-pyrimidin-4-yl-4-[[(1S,2S,4S)-2-pyrrolidin-1-yl-4-[3-(trifluoromethyl)phenyl]cyclohexyl]amino]benzenesulfonamide, N-[(2,4-dimethoxyphenyl)methyl]-2-fluoro-5-hydroxy-N-pyrimidin-4-yl-4-[[(1S,2S,4S)-2-pyrrolidin-1-yl-4-[3-(trifluoromethyl)phenyl]-cyclohexyl]amino]benzenesulfonamide was obtained. LCMS (ESI) m/z: 730.3 [M+H]+.
Following the procedure described in Example 1 Step s and making non-critical variations as required to replace N-(2,4-dimethoxybenzyl)-4-((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)-cyclohexyl)-6-fluoro-3-oxo-N-(pyrimidin-4-yl)-3,4-dihydro-2H-benzo[b][1,4]oxazine-7-sulfonamide with N-[(2,4-dimethoxyphenyl)methyl]-2-fluoro-5-hydroxy-N-pyrimidin-4-yl-4-[[(1S,2S,4S)-2-pyrrolidin-1-yl-4-[3-(trifluoromethyl)phenyl]cyclohexyl]-amino]benzenesulfonamide, 2-fluoro-5-hydroxy-N-(pyrimidin-4-yl)-4-(((1S,2S,4S)-2-(pyrrolidin-1-yl)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)amino)benzenesulfonamide formate was obtained. LCMS (ESI) m/z: 580.2 [M+H]+. 1H NMR (500 MHz, d6-DMSO) δ 8.44 (d, J=14.1 Hz, 3H), 8.07 (d, J=4.2 Hz, 1H), 7.83-7.76 (m, 2H), 7.76-7.67 (m, 2H), 7.24 (d, J=7.0 Hz, 1H), 6.77 (d, J=5.3 Hz, 1H), 6.48 (d, J=12.4 Hz, 1H), 5.52 (s, 1H), 3.44-3.37 (m, 1H), 3.21-3.14 (m, 1H), 2.96 (s, 1H), 2.77 (d, J=33.7 Hz, 4H), 2.43 (d, J=10.8 Hz, 1H), 2.15 (d, J=12.0 Hz, 1H), 1.93 (t, J=10.1 Hz, 2H), 1.83-1.72 (m, 4H), 1.41 (s, 2H).
Following the procedure described in Example 2 and making non-critical variations to replace N-(2,4-dimethoxybenzyl)-4-(((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)-cyclohexyl)amino)-2-fluoro-5-hydroxy-N-(pyrimidin-4-yl)benzenesulfonamide with N-(3,5-dimethoxybenzyl)-2-fluoro-5-hydroxy-N-(pyrimidin-4-yl)-4-(((1S,2S,4S)-2-(pyrrolidin-1-yl)-4-(3-(trifluoromethyl)phenyl)-cyclohexyl)amino)benzenesulfonamide, 6-fluoro-N-(pyrimidin-4-yl)-4-((1S,2S,4S)-2-(pyrrolidin-1-yl)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)-3,4-dihydro-2H-benzo[b][1,4]oxazine-7-sulfonamide was obtained. LCMS (ESI) m/z: 606.2 [M+H]+. 1H NMR (500 MHz, d6-DMSO) δ 8.50 (s, 1H), 8.19 (s, J=28.3 Hz, 1H), 8.14 (s, 1H), 7.67-7.51 (m, 4H), 7.06 (d, J=7.3 Hz, 1H), 6.91-6.77 (m, 2H), 4.09 (s, 2H), 3.99-3.87 (m, 1H), 3.45-3.37 (m, 2H), 3.22-3.14 (m, 1H), 2.82-2.52 (m, 5H), 1.98 (d, J=9.7 Hz, 1H), 1.93-1.61 (m, 5H), 1.61-1.41 (m, 4H).
To a solution of (1S,2S)-2-aminocyclohexanol (2.0 g, 17.37 mmol) and imidazole (1.77 g, 26.05 mmol) in DCM (30 mL) at 0° C. was added tert-butyldimethylchlorosilane (2.88 g, 19.1 mmol) in DCM (10 mL). The mixture was stirred at room temperature for 16 h. The reaction was quenched with sat. aq. NaHCO3(50 mL) and extracted with DCM (50 mL). The organic layer was washed with brine (50 mL), dried over anhydrous Na2SO4, filtered and concentrated in vacuo. The crude residue was purified by silica gel chromatography (solvent gradient: 0-40% EtOAc (0.5% TEA) in petroleum ether) to give the title compound (2.45 g, 62%) as yellow oil. 1H NMR (400 MHz, CDCl3) δ 3.22-3.12 (m, 1H), 2.56-2.47 (m, 1H), 1.91-1.79 (m, 2H), 1.74-1.60 (m, 2H), 1.34-1.19 (m, 3H), 1.15-1.02 (m, 1H), 0.90 (s, 9H), 0.08 (s, 6H).
To a sealed tube (30 mL) equipped with a magnetic stir bar was added Pd(OAc)2 (49 mg, 0.22 mmol), 2-hydroxypyridine-3-carbaldehyde (54 mg, 0.44 mmol), 1-iodo-3-(trifluoromethyl)-benzene (1.19 g, 4.36 mmol), silver trifluoroacetate (963 mg, 4.36 mmol) and solvent (HFIP/HOAc=19/1, 11 mL), followed by (1S,2S)-2-((tert-butyldimethylsilyl)-oxy)cyclohexanamine (500 mg, 2.18 mmol), and H2O (0.39 mL, 21.79 mmol). The tube was capped and covered with safety shield. Then the mixture was stirred at room temperature for 10 min before heating to 150° C. for 4 h under vigorous stirring. After cooling to room temperature, the dark brown suspension was passed through a pad of Celite and washed with EtOAc (10 mL×2). The EtOAc solutions were combined and concentrated in vacuo. The residue was dissolved in EtOAc (100 mL) and washed with sat. aq. NaHCO3(100 mL). The organic layer was dried over anhydrous Na2SO4, filtered and concentrated in vacuo. The crude residue was purified by silica gel chromatography (solvent gradient: 0-20% EtOAc (5% TEA) in petroleum ether) to give the title compound (105 mg, 13%) as yellow oil. 1H NMR (400 MHz, CDCl3) δ 7.53-7.47 (m, 4H), 3.48-3.37 (m, 1H), 2.82-2.68 (m, 2H), 2.06-1.96 (m, 2H), 1.93-1.88 (m, 1H), 1.59-1.46 (m, 3H), 0.94 (s, 9H), 0.15 (s, 6H). LCMS (ESI) m/z: 374.3 [M+H]+.
To a solution of (1S,2S,5S)-2-((tert-butyldimethylsilyl)oxy)-5-(3-(trifluoromethyl)phenyl)-cyclohexanamine (100 mg, 0.27 mmol) in MeOH (3 mL) was added paraformaldehyde (40 mg, 1.34 mmol), acetic acid (0.03 mL, 0.54 mmol) and sodium cyanoborohydride (84 mg, 1.34 mmol). The mixture was stirred at room temperature for 16 h. EtOAc (50 mL) was added and washed with sat. aq. NaHCO3(30 mL) and brine (30 mL). The organic layer was dried over anhydrous Na2SO4, filtered and concentrated in vacuo to give the title compound (100 mg, crude) as light yellow oil that required no further purification. LCMS (ESI) m/z: 402.3 [M+H]+.
To a solution of (1S,2S,5S)-2-((tert-butyldimethylsilyl)oxy)-N,N-dimethyl-5-(3-(trifluoromethyl)phenyl)-cyclohexanamine (100 mg, 0.25 mmol) in THF (1 mL) was added 4 M aq. HCl (1 mL, 4 mmol). The mixture was stirred at room temperature for 16 h. The mixture was basified with sat. aq. Na2CO3 to pH 8-9 and extracted with EtOAc (30 mL×2). The combined organic layers were washed with brine (50 mL), dried over anhydrous Na2SO4, filtered and concentrated in vacuo to give the title compound (60 mg, crude) as yellow oil that required no further purification. 1H NMR (400 MHz, CDCl3) δ 7.51-7.38 (m, 4H), 3.54-3.45 (m, 1H), 2.73-2.64 (m, 1H), 2.49-2.40 (m, 1H), 2.32 (s, 6H), 2.29-2.23 (m, 1H), 2.00-1.89 (m, 2H), 1.57-1.49 (m, 2H), 1.44-1.37 (m, 1H).
To a solution of sodium hydride (60%, 13 mg, 0.31 mmol) in DMF (0.5 mL) at 0° C. was added (1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)cyclohexanol (60 mg, 0.21 mmol) in DMF (1 mL). The mixture was stirred at 0° C. for 30 min. N-(2,4-dimethoxybenzyl)-2,4,5-trifluoro-N-(pyrimidin-4-yl)benzenesulfonamide (92 mg, 0.21 mmol) in DMF (0.5 mL) was added and stirred at room temperature for an additional 2 h. The reaction was quenched with sat. aq. NH4Cl (3 mL) at 0° C. and extracted with EtOAc (60 mL). The organic layer was washed with brine (30 mL×3), dried over anhydrous Na2SO4, filtered and concentrated in vacuo. The crude residue was purified by Prep-TLC (EtOAc/petroleum ether=4:1) to give the title compound (70 mg, 47%) as light yellow oil. 1H NMR (400 MHz, CDCl3) δ 8.80 (d, J=1.2 Hz, 1H), 8.47 (d, J=6.0 Hz, 1H), 7.81-7.75 (m, 1H), 7.52-7.39 (m, 4H), 7.24-7.21 (m, 2H), 6.81-6.75 (m, 1H), 6.45-6.41 (m, 2H), 5.27 (s, 2H), 4.41-4.33 (m, 1H), 3.82 (s, 3H), 3.78 (s, 3H), 3.00-2.92 (m, 1H), 2.80-2.71 (m, 1H), 2.33 (s, 6H), 2.30-2.25 (m, 1H), 2.14-2.07 (m, 1H), 2.03-1.96 (m, 1H), 1.72-1.64 (m, 2H), 1.56-1.52 (m, 1H). LCMS (ESI) m/z: 707.3 [M+H]+.
A mixture of N-(2,4-dimethoxybenzyl)-4-(((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)-phenyl)cyclohexyl)oxy)-2,5-difluoro-N-(pyrimidin-4-yl)benzenesulfonamide (65 mg, 0.09 mmol) and formic acid (1 mL) was stirred at room temperature for 16 h. The mixture was concentrated in vacuo. The crude residue was purified by reverse phase chromatography (acetonitrile 23-43%/0.225% formic acid in water) to give the title compound (23 mg, 45%) as a white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.38 (s, 1H), 8.13 (s, 1H), 8.06 (d, J=6.0 Hz, 1H), 7.68-7.55 (m, 5H), 7.39-7.31 (m, 1H), 6.70 (d, J=6.0 Hz, 1H), 4.85-4.75 (m, 1H), 3.42-3.36 (m, 1H), 2.94-2.84 (m, 1H), 2.54 (s, 6H), 2.25-2.16 (m, 1H), 2.13-2.04 (m, 1H), 1.85-1.65 (m, 3H), 1.60-1.46 (m, 1H). LCMS (ESI) m/z: 557.2 [M+H]+.
Following the procedure described in Example 1 Steps q-s and making non-critical variations to replace N-(2,4-dimethoxybenzyl)-4-(((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)-amino)-2-fluoro-5-hydroxy-N-(pyrimidin-4-yl)benzenesulfonamide with N-(3,5-dimethoxybenzyl)-2-fluoro-5-hydroxy-N-(pyrimidin-4-yl)-4-(((1S,2S,4S)-2-(pyrrolidin-1-yl)-4-(3-(trifluoromethyl)phenyl)-cyclohexyl)amino)benzenesulfonamide, 6-fluoro-3-oxo-N-(pyrimidin-4-yl)-4-((1S,2S,4S)-2-(pyrrolidin-1-yl)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)-3,4-dihydro-2H-benzo[b][1,4]oxazine-7-sulfonamide was obtained. LCMS (ESI) m/z: 620.2 [M+H]+. 1H NMR (500 MHz, d6-DMSO) δ 8.29 (s, 1H), 7.96 (s, 1H), 7.70-7.60 (m, 2H), 7.59-7.50 (m, 2H), 7.38-7.27 (m, 2H), 6.61 (s, 1H), 4.54 (s, 2H), 4.02 (s, 2H), 2.83 (s, 2H), 2.00-1.83 (m, 3H), 1.82-1.26 (m, 8H), 1.23 (s, J=7.1 Hz, 2H).
Following the procedure described in Example 1 and making non-critical variations as required to replace 1-(3-(trifluoromethyl)phenyl)ethanone with 1-(2-fluoro-5-(trifluoromethyl)phenyl)-ethanone, the title compound was obtained as a light yellow solid. LCMS (ESI) m/z: 377.0 [M+H]+.
Following the procedure described in Example 23 and making non-critical variations as required to replace tert-butyl ((1S,2S,4S)-2-amino-4-(3-(trifluoromethyl)phenyl)cyclohexyl)carbamate with tert-butyl ((1S,2S,4S)-2-amino-4-(2-fluoro-5-(trifluoromethyl)phenyl)cyclohexyl)carbamate, the title compound was obtained as a white solid. 1H NMR (400 MHz, CDCl3) δ 8.81 (s, 1H), 8.42 (d, J=6.0 Hz, 1H), 7.65-7.46 (m, 3H), 7.22-7.16 (m, 1H), 6.91-6.77 (m, 1H), 6.45-6.41 (m, 1H), 4.01-3.85 (m, 1H), 3.72-3.58 (m, 1H), 3.41-3.25 (m, 2H), 3.23-3.08 (m, 3H), 2.42-2.33 (m, 1H), 2.28-2.16 (m, 1H), 2.14-1.94 (m, 5H), 1.93-1.76 (s, 2H), 1.64-1.47 (m, 1H). LCMS (ESI) m/z: 600.0 [M+H]+.
A flask containing tert-butyl ((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)-cyclohexyl)carbamate (85 mg, 0.22 mmol) from Example 1 was purged for 5 minutes with nitrogen then THF (2 mL) was added and the solution was cooled to 0° C. Lithium aluminium hydride (0.55 mL of a 2M solution in THF, 1.1 mmol) was then added under N2 and cooling bath was removed and warmed to room temperature (˜10 minutes) then placed in a 70° C. oil bath with a reflux condenser under nitrogen. After 30 min, water (0.42 mL) was added followed by 2N NaOH (0.42 mL) then a further portion of water (1.4 mL) was added. After stirring for 15 minutes, the mixture was diluted with EtOAc (20 mL), Na2SO4 was added, the mixture was filtered through celite and concentrated to provide crude (1S,2S,4S)—N1,N2,N2-trimethyl-4-(3-(trifluoromethyl)phenyl)cyclohexane-1,2-diamine (47 mg, 71% yield) as a clear oil which was used directly in the next step without further purification. LCMS (ESI) m/z: 301.2 [M+H]+.
Following the procedure described in Example 4 and making non-critical variations as required to replace (1S,2S,5S)—N1,N1-dimethyl-5-(3-(trifluoromethyl)phenyl)cyclohexane-1,2-diamine with (1S,2S,4S)—N1,N2,N2-trimethyl-4-(3-(trifluoromethyl)phenyl)cyclohexane-1,2-diamine, 5-chloro-4-(((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)(methyl)amino)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide formate was obtained as a white solid. LCMS (ESI) m/z: 585.9 [M+H]+. 1H NMR (400 MHz, d6-DMSO) δ 8.38 (s, 1H), 8.13 (s, 1H), 8.08 (s, 1H), 7.72 (d, J=7.5 Hz, 1H), 7.63 (s, 1H), 7.59 (d, J=7.0 Hz, 1H), 7.57-7.48 (m, 2H), 6.83 (s, 1H), 6.71 (s, 1H), 3.59 (t, J=9.8 Hz, 1H), 3.29 (s, 3H), 2.72 (s, 6H), 2.15-2.00 (m, 1H), 1.96-1.74 (m, 6H), 1.63 (dd, J=25.1, 12.3 Hz, 1H).
To a mixture of 2,6-di-tert-butyl-4-methylpyridine (2.30 g, 11.2 mmol) and rac-(1S,2S)-dimethyl 4-oxocyclohexane-1,2-dicarboxylate (2.00 g, 9.34 mmol) in DCE (30 mL) was added trifluoromethane-sulfonic anhydride (1.73 mL, 103 mmol) and the mixture placed in a 65° C. oil bath sealed. After 3 h, the mixture was cooled to room temperature, silica gel (50 mL) was added, the slurry was filtered through a 3 cm silica plug and washed with DCM. The filtrate was concentrated in vacuo to provide rac-(1S,2S)-dimethyl 4-(((trifluoromethyl)sulfonyl)oxy)-cyclohex-4-ene-1,2-dicarboxylate (3.40 g, 9.82 mmol, 105% crude yield) as ˜7:3 ratio of enol regioisomers by NMR. Used as is in the next step without further purification. Major Isomer: 1H NMR (400 MHz, CDCl3) δ 5.84-5.72 (m, 1H), 3.72 (s, 3H), 3.71 (s, 3H), 3.12 (dd, J=9.0, 6.3 Hz, 1H), 2.94 (td, J=9.3, 5.8 Hz, 1H), 2.67-2.50 (m, 2H), 2.50-2.37 (m, 2H).
Crude Rac-(1S,2S)-dimethyl 4-(((trifluoromethyl)sulfonyl)oxy)cyclohex-4-ene-1,2-dicarboxylate prepared above (3.23 g, 9.34 mmol), dichlorobis(triphenylphosphine)palladium (655 mg, 0.93 mmol), 3-trifluoromethylbenzeneboronic acid (2.48 g, 13.1 mmol), sodium carbonate (1.98 g, 18.7 mmol), water (10 mL) and DME (50 mL) were combined in a flask. The flask was capped and nitrogen sparged 10 min then placed in an oil bath at 80° C. After 4 h, the mixture was cooled to room temperature, diluted with ethyl acetate (40 mL), filtered through a pad of silica gel and concentrated in vacuo. The crude was purified by flash chromatography through Si gel (0-100% EtOAc/hexanes) to provide rac-(3S,4S)-dimethyl 3′-(trifluoromethyl)-2,3,4,5-tetrahydro-[1,1′-biphenyl]-3,4-dicarboxylate (2.00 g, 63% yield) as a pale yellow oil as ˜3:1 ratio of alkene isomers by NMR. LCMS (ESI) m/z: 343.4 [M+H]+. Major isomer: 1H NMR (400 MHz, CDCl3) δ 7.58 (s, 1H), 7.50 (d, J=9.6 Hz, 2H), 7.44 (d, J=7.7 Hz, 1H), 6.16-6.12 (m, 1H), 3.74 (s, 3H), 3.73 (s, 3H), 3.04 (dd, J=10.5, 5.4 Hz, 1H), 2.96 (td, J=10.5, 5.6 Hz, 1H), 2.81 (dd, J=16.7, 5.5 Hz, 1H), 2.67-2.49 (m, 2H), 2.47-2.36 (m, 1H).
A solution of rac-(3S,4S)-dimethyl 3′-(trifluoromethyl)-2,3,4,5-tetrahydro-[1,1′-biphenyl]-3,4-dicarboxylate (2.40 g, 7.01 mmol) in CHCl3 (12.0 mL, 150 mmol) was added to a solution of sodium hydroxide (6.00 g, 150 mmol) and benzyltrimethylammonium chloride (60 mg, 0.32 mmol) in water (6 mL) and the mixture was heated to 40° C. After 5 min, the mixture turned pale yellow and foaming was visible. The flask was sealed and let stir at 40° C. for 16 h. The mixture was cooled to rt, dichloromethane (50 ml) was added and the mixture was transferred to an extraction funnel. The phases were separated and the DCM phase was dried with sodium sulfate, filtered and concentrated to dryness to provide crude rac-(1S,3S,4S,6R)-dimethyl 7,7-dichloro-1-(3-(trifluoromethyl)phenyl)bicyclo[4.1.0]heptane-3,4-dicarboxylate (3.3 g, quant. yield) as a yellow oil which was used directly in the next step.
In a flask containing crude rac-(1S,3S,4S,6R)-dimethyl 7,7-dichloro-1-(3-(trifluoromethyl)phenyl)-bicyclo[4.1.0]heptane-3,4-dicarboxylate prepared above (2.98 g, 7.01 mmol) was added THF (2 mL), MeOH (0.2 mL), water (5 mL) and lithium hydroxide monohydrate (2.5 g, 59 mmol) and the mixture was stirred at rt. After 16 h, the mixture was acidified to pH<2 with conc. HCl conc (<1 ml) and extracted with EtOAc (25 ml). The EtOAc phase was dried with sodium sulfate, filtered and concentrated to dryness. Upon standing, a solid crystallized. It was washed with heptanes to afford 1.74 g of desired procude as a pale orange solid. The mother liquor was concentrated, dissolved in DMSO and purified by C18 reverse phase flash chromatography (25-65% MeCN/10 mM aqueous ammonium formate, pH=3.8). Appropriate fractions combined and lyophilized to provide a further 0.62 g of desired product which was combined with the previously obtained solid material to provide rac-(1S,3S,4S,6R)-7,7-dichloro-1-(3-(trifluoromethyl)phenyl)bicyclo[4.1.0]heptane-3,4-dicarboxylic acid (2.36 g, 85% yield) as pale yellow solid as a single diastereomer. Di-ester relative configuration known to be trans. Relative cyclopropane stereochemistry arbitrarily assigned. LCMS (ESI) m/z: 395.2 [M−H]−. 1H NMR (500 MHz, CDCl3) δ 9.74-5.60 (br s, 2H), 7.58 (d, J=7.8 Hz, 1H), 7.51 (t, J=7.7 Hz, 1H), 7.49-7.46 (m, 1H), 7.45 (d, J=7.8 Hz, 1H), 2.95-2.84 (m, 1H), 2.63-2.48 (m, 2H), 2.34 (t, J=14.8 Hz, 1H), 2.25-2.14 (m, 1H), 1.32-1.27 (m, 1H), 1.27-1.25 (m, 1H).
In a flask containing rac-(1S,3S,4S,6R)-7,7-dichloro-1-(3-(trifluoromethyl)phenyl)-bicyclo[4.1.0]heptane-3,4-dicarboxylic acid (1.00 g, 2.52 mmol) was added DMF (0.015 mL, 0.19 mmol) then oxalyl chloride (3.0 mL, 35 mmol). The suspension was stirred at room temperature and after 72 h, the mixture was concentrated to dryness, then dissolved in 1,4-dioxane (8 mL). The mixture was concentrated, redisssolved in 1,4-dioxane (8 mL) and trimethylsilyl azide (0.73 mL, 5.5 mmol) was added. After stirring 90 min at rt, the mixture was heated to 90° C. (gas evolution occurred) for 1h. The mixture was cooled to 45° C. and hydrochloric acid (3.0 mL, 36 mmol) was added to the mixture and stirred at 45° C. overnight. After 16 h, the mixture was cooled to rt and water (20 ml) and EtOAc (100 ml) were added and the phases were separated. The organic phase was dried over sodium sulfate, filtered and concentrated to dryness. Upon standing for 16 h, a solid precipitated which was washed with heptane and dried. This crude material was purified by C18 reverse phase flash chromatography (5-95% MeCN/10 mM aqueous ammonium formate, pH=3.8). Appropriate fractions combined and lyophilized to provide rac-(3aS,4aS,5aR,6aS)-5,5-dichloro-4a-(3-(trifluoromethyl)phenyl)octahydrocyclopropa[4,5]benzo[1,2-d]imidazol-2(1H)-one (116 mg, 0.32 mmol, 13% yield) as an off-white solid. LCMS (ESI) m/z: 365.2 [M+H]+. 1H NMR (500 MHz, CDCl3) δ 7.57 (d, J=7.5 Hz, 1H), 7.51 (t, J=7.6 Hz, 1H), 7.45 (d, J=8.5 Hz, 2H), 4.98 (d, J=24.7 Hz, 1H), 4.72-3.64 (br s, 2H), 3.62-3.52 (m, 1H), 3.28 (td, J=12.0, 4.4 Hz, 1H), 2.64-2.58 (m, 1H), 2.48 (dd, J=13.5, 4.2 Hz, 1H), 2.40-2.32 (m, 1H), 2.26-2.18 (m, 1H).
In a flask was added rac-(3aS,4aS,5aR,6aS)-5,5-dichloro-4a-(3-(trifluoromethyl)phenyl)octahydro-cyclopropa[4,5]benzo[1,2-d]imidazol-2(1H)-one (103 mg, 0.28 mmol), diglyme (1 mL) and concentrated HCl (2.0 mL, 24 mmol). The mixture was heated to 90° C. for 16 hours, then was cooled to room temperature. It was diluted with water (10 ml) and DCM (20 ml) and transferred in a separatory funnel. The phases were separated and the aqueous phase was washed with DCM and then EtOAc (20 ml each). Sodium hydroxide 50% in water (3 ml) was added and the aqueous phase was extracted with DCM (2×20 ml) and EtOAc (20 ml). These second organic extracts were dried over sodium sulfate, filtered and concentrated to afford rac-(1S,3S,4S,6R)-7,7-dichloro-1-(3-(trifluoromethyl)phenyl)bicyclo[4.1.0]heptane-3,4-diamine (146 mg, 153% crude yield) as a pale yellow oil. Used as is in the next step. LCMS (ESI) m/z: 339.0 [M+H]+.
Following the procedure described in Example 4 and making non-critical variations as required to replace (1S,2S,5S)-5-(3,4-dichlorophenyl)-N1,N1-dimethylcyclohexane-1,2-diamine with crude rac-(1S,3S,4S,6R)-7,7-dichloro-1-(3-(trifluoromethyl)phenyl)bicyclo[4.1.0]heptane-3,4-diamine prepared above (assumed 0.28 mmol) and running the reaction at room temperature provided rac-4-(((1R,3S,4S,6S)-4-amino-7,7-dichloro-6-(3-(trifluoromethyl)phenyl)bicyclo[4.1.0]heptan-3-yl)amino)-5-chloro-N-(2,4-dimethoxy-benzyl)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide (95 mg, 29% yield) as an off-white solid. LCMS (ESI) m/z: 773.9 [M+H]+.
Following the procedure described in Example 1 Step n and making non-critical variations as required to replace tert-butyl ((1S,2S,4S)-2-amino-4-(3-(trifluoromethyl)phenyl)-cyclohexyl)carbamate with rac-4-(((1R,3S,4S,6S)-4-amino-7,7-dichloro-6-(3-(trifluoromethyl)phenyl)bicyclo[4.1.0]heptan-3-yl)amino)-5-chloro-N-(2,4-dimethoxybenzyl)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide, rac-5-chloro-4-(((1R,3S,4S,6S)-7,7-dichloro-4-(dimethylamino)-6-(3-(trifluoromethyl)phenyl)bicyclo[4.1.0]heptan-3-yl)amino)-N-(2,4-dimethoxybenzyl)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide (35 mg, 41% yield) was obtained as an off-white solid. LCMS (ESI) m/z: 802.3 [M+H]+.
Rac-5-chloro-4-(((1R,3S,4S,6S)-7,7-dichloro-4-(dimethylamino)-6-(3-(trifluoromethyl)-phenyl)bicyclo[4.1.0]heptan-3-yl)amino)-N-(2,4-dimethoxybenzyl)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide (35 mg, 0.044 mmol) was separated by chiral HPLC (Chiralpak IA (250 mm*20 mm, 5 um, MeOH:DCM:hexane 5:5:90 containing 0.1% of diethylamine, 15 ml/min) to afford: 5-chloro-4-(((1R,3S,4S,6S)-7,7-dichloro-4-(dimethylamino)-6-(3-(trifluoromethyl)-phenyl)bicyclo[4.1.0]heptan-3-yl)amino)-N-(2,4-dimethoxybenzyl)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide (peak-1, 15 mg, 43%) as an off-white solid, LCMS (ESI) m/z: 802.3 [M+H]+; and 5-chloro-4-(((1S,3R,4R,6R)-7,7-dichloro-4-(dimethylamino)-6-(3-(trifluoromethyl)phenyl)bicyclo[4.1.0]heptan-3-yl)amino)-N-(2,4-dimethoxybenzyl)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide (peak-2, 13 mg, 37%) as an off-white solid, LCMS (ESI) m/z: 802.3 [M+H]+. Diamine relative stereochemistry known to be trans, relative cyclopropane stereochemistry arbitrarily assigned. Absolute configuration was arbitrarily assigned to each enantiomer.
Following the procedure described in Example 1 Step s and making non-critical variations as required to replace N-(2,4-dimethoxybenzyl)-4-((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)-6-fluoro-3-oxo-N-(pyrimidin-4-yl)-3,4-dihydro-2H-benzo[b][1,4]oxazine-7-sulfonamide with 5-chloro-4-(((1R,3S,4S,6S)-7,7-dichloro-4-(dimethylamino)-6-(3-(trifluoromethyl)phenyl)bicyclo[4.1.0]heptan-3-yl)amino)-N-(2,4-dimethoxybenzyl)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide, 5-Chloro-4-(((1R,3S,4S,6S)-7,7-dichloro-4-(dimethylamino)-6-(3-(trifluoromethyl)phenyl)bicyclo[4.1.0]heptan-3-yl)amino)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide was obtained as a white solid. The absolute configuration was assigned arbitrarily. LCMS (ESI) m/z: 652.1 [M+H]+. 1H NMR (500 MHz, d6-DMSO) δ 12.90-11.50 (br s, 1H), 8.52 (s, 1H), 8.22 (d, J=5.1 Hz, 1H), 7.76-7.59 (m, 5H), 6.88 (d, J=6.2 Hz, 1H), 6.61 (d, J=12.7 Hz, 1H), 6.01 (s, 1H), 3.53-3.44 (m, 1H), 2.83 (t, J=8.4 Hz, 1H), 2.57-2.51 (m, 2H), 2.28 (dd, J=14.3, 4.0 Hz, 1H), 2.24-2.15 (m, 2H), 2.12 (s, 6H).
Following the procedure described in Example 1 Step s and making non-critical variations as required to replace N-(2,4-dimethoxybenzyl)-4-((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)-phenyl)cyclohexyl)-6-fluoro-3-oxo-N-(pyrimidin-4-yl)-3,4-dihydro-2H-benzo[b][1,4]oxazine-7-sulfonamide with 5-chloro-4-(((1S,3R,4R,6R)-7,7-dichloro-4-(dimethylamino)-6-(3-(trifluoromethyl)-phenyl)bicyclo[4.1.0]heptan-3-yl)amino)-N-(2,4-dimethoxybenzyl)-2-fluoro-N-(pyrimidin-4-yl)benzene-sulfonamide, 5-chloro-4-(((1S,3R,4R,6R)-7,7-dichloro-4-(dimethylamino)-6-(3-(trifluoromethyl)-phenyl)bicyclo[4.1.0]heptan-3-yl)amino)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide as a white solid. The absolute configuration was assigned arbitrarily. LCMS (ESI) m/z: 652.1 [M+H]+. 1H NMR (500 MHz, d6-DMSO) δ 12.90-11.50 (br s, 1H), 8.53 (s, 1H), 8.23 (s, 1H), 7.82-7.58 (m, 5H), 6.89 (d, J=5.6 Hz, 1H), 6.62 (d, J=12.7 Hz, 1H), 6.02 (s, 1H), 3.54-3.44 (m, 1H), 2.90-2.77 (m, 1H), 2.60-2.52 (m, 2H), 2.28 (dd, J=14.5, 4.1 Hz, 1H), 2.25-2.15 (m, 2H), 2.12 (s, 6H).
In a sealed tube containing 5-bromo-N-(2,4-dimethoxybenzyl)-2,4-difluoro-N-(pyrimidin-4-yl)benzenesulfonamide (200 mg, 0.40 mmol) was added THF (2 mL). The mixture was degassed with nitrogen for 2 minutes then dichlorobis(triphenylphosphine) palladium (II) (56 mg, 0.08 mmol), copper (I) iodide (7.6 mg, 0.04 mmol), propargyloxytrimethylsilane (123 uL, 0.80 mmol) and triethylamine (111 uL, 0.80 mmol) were sequentially added. The vial was sealed and stirred at 65° C. overnight. After 18 h, the reaction mixture was cooled to rt and directly purified by C18 reverse phase flashe chromatography (20-100% MeCN/10 mM aqueous ammonium bicarbonate, pH=10). Appropriate fractions were concentrated to remove all solvent, redissolved in DCM, passed through a phase separator then concentrated to provide N-(2,4-dimethoxybenzyl)-2,4-difluoro-5-(3-hydroxyprop-1-yn-1-yl)-N-(pyrimidin-4-yl)benzenesulfonamide (155 mg, 82% yield). LCMS (ESI) m/z: 476.1 [M+H]+.
In a flask containing (1S,2S,5S)—N1,N1-dimethyl-5-(3-(trifluoromethyl)phenyl)cyclohexane-1,2-diamine (150 mg, 0.52 mmol) was added DMSO (4 mL) followed by N-(2,4-dimethoxybenzyl)-2,4-difluoro-5-(3-hydroxyprop-1-yn-1-yl)-N-(pyrimidin-4-yl)benzenesulfonamide (299 mg, 0.63 mmol) and DIPEA (0.28 mL, 1.57 mmol) and the mixture stirred at 75° C. After 3 h, the reaction mixture was cooled to rt and purified directly by prep-HPLC-MS (CSH column, 60-80% MeCN/10 mM aqueous ammonium bicarbonate, pH=10). Appropriate fractions were combined and lyophilized to provide N-(2,4-dimethoxybenzyl)-4-(((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)amino)-2-fluoro-5-(3-hydroxyprop-1-yn-1-yl)-N-(pyrimidin-4-yl)benzenesulfonamide (160 mg, 41% yield). LCMS (ESI) m/z: 742.3 [M+H]+.
To N-(2,4-dimethoxybenzyl)-4-(((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)-phenyl)cyclohexyl)amino)-2-fluoro-5-(3-hydroxyprop-1-yn-1-yl)-N-(pyrimidin-4-yl)benzenesulfonamide (165 mg, 0.22 mmol) in methanol (10 mL) was added 10% w/w palladium on carbon (30 mg). The flask was evacuated and purged with H2 (×3) then stirred at room temperature under a balloon of hydrogen. After 3 h, the flask was purged with N2 then filtered through Celite and concentrated to provide N-(2,4-dimethoxybenzyl)-4-(((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)amino)-2-fluoro-5-(3-hydroxypropyl)-N-(pyrimidin-4-yl)benzenesulfonamide (160 mg, 96% yield) which was used directly in the next step without further purification. LCMS (ESI) m/z: 746.3 [M+H]+.
In a flask containing N-(2,4-dimethoxybenzyl)-4-(((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)amino)-2-fluoro-5-(3-hydroxypropyl)-N-(pyrimidin-4-yl)benzenesulfonamide (80 mg, 0.11 mmol) was added DCM (3 mL) followed by DIPEA (0.06 mL, 0.32 mmol), p-toluenesulfonyl chloride (31 mg, 0.16 mmol) and pyridine (25 mg, 0.32 mmol). The reaction was stirred at room temperature for 18 hours. To this crude tosylate was added DMSO (5 mL) and cesium carbonate (109 mg, 0.33 mmol) and the mixture was stirred at 80° C. After 30 minutes, the reaction was cooled to rt and diluted with EtOAc (30 mL) and washed with water (20 mL). The organic extract was washed with saturated aqueous brine solution, dried over Na2SO4, filtered and concentrated. The crude material was purified by prep-HPLC-MS (CSH column, 65-85% MeCN/10 mM aqueous ammonium bicarbonate, pH=10). Appropriate fractions were combined and lyophilized to provide N-(2,4-dimethoxybenzyl)-1-((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)-7-fluoro-N-(pyrimidin-4-yl)-1,2,3,4-tetrahydroquinoline-6-sulfonamide (42 mg, 87% yield). LCMS (ESI) m/z: 728.4 [M+H]+.
Following the procedure described in Example 1 Step s and making non-critical variations as required to replace N-(2,4-dimethoxybenzyl)-4-((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)-6-fluoro-3-oxo-N-(pyrimidin-4-yl)-3,4-dihydro-2H-benzo[b][1,4]oxazine-7-sulfonamide with N-(2,4-dimethoxybenzyl)-1-((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)-7-fluoro-N-(pyrimidin-4-yl)-1,2,3,4-tetrahydroquinoline-6-sulfonamide, 1-((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)-7-fluoro-N-(pyrimidin-4-yl)-1,2,3,4-tetrahydroquinoline-6-sulfonamide was obtained as a white solid. LCMS (ESI) m/z: 578.1 [M+H]+. 1H NMR (500 MHz, d6-DMSO) δ 8.53 (s, 1H), 8.24 (s, 1H), 7.74-7.48 (m, 5H), 7.32 (s, 1H), 6.90 (s, 1H), 6.71 (d, J=14.6 Hz, 1H), 3.96-3.85 (m, 1H), 2.95-2.88 (m, 1H), 2.75-2.60 (m, 3H), 2.16 (s, 6H), 1.98-1.85 (m, 4H), 1.80-1.65 (m, 6H).
To N-(2,4-dimethoxybenzyl)-4-(((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)-phenyl)cyclohexyl)amino)-2-fluoro-5-(3-hydroxypropyl)-N-(pyrimidin-4-yl)benzenesulfonamide prepared in Example 54 (82 mg, 0.11 mmol) in DCM (5 mL) was added Dess-Martin periodinane (70 mg, 0.16 mmol) and the mixture was stirred at room temperature. After 45 min, the mixture was concentrated and to the residue was added THF (3 mL), water (2 mL), 2-methylbutene (0.47 mL, 4.4 mmol), sodium phosphate monobasic dihydrate (172 mg, 1.1 mmol) and sodium chlorite (50 mg, 0.55 mmol) in that order. The mixture was stirred at room temperature for 1 hour and then quenched by addition of 10% aqueous Na2S2O3 (10 mL) and extracted with EtOAc (30 mL). The organic extract was dried over Na2SO4, filtered and concentrated. The crude material obtained was purified by prep-HPLC-MS (CSH column, 60-80% MeCN/10 mM aqueous ammonium bicarbonate, pH=10). Appropriate fractions were combined and lyophilized to provide N-(2,4-dimethoxybenzyl)-1-((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)-7-fluoro-2-oxo-N-(pyrimidin-4-yl)-1,2,3,4-tetrahydroquinoline-6-sulfonamide (18 mg, 22% yield). LCMS (ESI) m/z: 742.3 [M+H]+.
Following the procedure described in Example 1 Step s and making non-critical variations as required to replace N-(2,4-dimethoxybenzyl)-4-((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)-6-fluoro-3-oxo-N-(pyrimidin-4-yl)-3,4-dihydro-2H-benzo[b][1,4]oxazine-7-sulfonamide with N-(2,4-dimethoxybenzyl)-1-((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)-7-fluoro-2-oxo-N-(pyrimidin-4-yl)-1,2,3,4-tetrahydroquinoline-6-sulfonamide, 1-((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)-7-fluoro-N-(pyrimidin-4-yl)-1,2,3,4-tetrahydroquinoline-6-sulfonamide was obtained as a white solid. LCMS (ESI) m/z: 592.1 [M+H]+. 1H NMR (500 MHz, d6-DMSO) δ 8.34 (s, 1H), 8.03 (s, 1H), 7.68-7.55 (m, 3H), 7.50 (s, 2H), 7.19-7.10 (m, 1H), 6.72 (s, 1H), 3.92-3.83 (m, 1H), 2.84-2.77 (m, 2H), 2.07 (s, 6H), 2.01-1.46 (m, 8H).
To a solution of (1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)cyclohexanol prepared in Example 48 (300 mg, 1.04 mmol) in DMSO (8 mL), was added sodium tert-butoxide (225 mg, 2.34 mmol). The mixture was stirred 10 minutes at rt then slowly added to a solution of 5-bromo-N-(2,4-dimethoxybenzyl)-2,4-difluoro-N-(pyrimidin-4-yl)benzenesulfonamide prepared in Example 1 (730 mg, 1.46 mmol) in DMSO (4 mL). The reaction mixture was stirred 30 minutes at rt then diluted with EtOAc, washed with H2O (×2), then brine. The organic extract was dried over MgSO4, filtered and concentrated. The residue was purified by prep-HPLC-MS (CSH column, 70-90% MeCN/10 mM aqueous ammonium bicarbonate, pH=10). Appropriate fractions were combined and lyophilized to provide 5-bromo-N-(2,4-dimethoxybenzyl)-4-(((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)oxy)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide (304 mg, 40% yield). LCMS (ESI) m/z: 767.2, 769.1 (M+H)+.
Following the procedure described in Example 1 Step s and making non-critical variations as required to replace N-(2,4-dimethoxybenzyl)-4-((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)-cyclohexyl)-6-fluoro-3-oxo-N-(pyrimidin-4-yl)-3,4-dihydro-2H-benzo[b][1,4]oxazine-7-sulfonamide with 5-bromo-N-(2,4-dimethoxybenzyl)-4-(((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)-phenyl)cyclohexyl)oxy)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide, 5-bromo-4-(((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)oxy)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide was obtained. LCMS (ESI) m/z: 617.1, 619.0 (M+H)+. 1H NMR (500 MHz, d6-DMSO) δ 8.41 (s, 1H), 8.08 (d, J=6.3 Hz, 1H), 7.99 (d, J=7.7 Hz, 1H), 7.64-7.56 (m, 4H), 7.33 (d, J=11.9 Hz, 1H), 6.73 (d, J=6.1 Hz, 1H), 4.90-4.82 (m, 1H), 2.94-2.85 (m, 1H), 2.55 (s, 6H), 2.58-2.47 (m, 1H), 2.21-2.14 (m, 1H), 2.10-2.04 (m, 1H), 1.83-1.63 (m, 3H), 1.58-1.46 (m, 1H).
A flask was charged with 5-bromo-4-(((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)-phenyl)cyclohexyl)oxy)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide prepared in Example 56 (48 mg, 0.06 mmol), cesium carbonate (61 mg, 0.19 mmol), cyclobutyl(trifluoro)boron potassium (14 mg, 0.08 mmol), palladium (II) acetate (3.5 mg, 0.02 mmol) and n-butyldi-1-adamantyl-phosphine (5.5 mg, 0.02 mmol). Toluene (1.0 mL) and water (0.1 mL) were then added and the solution was degassed 10 minutes with N2 and placed in a 100° C. oil bath overnight. After 16 h, the mixture was cooled to rt and concentrated in vacuo. The crude residue was purified by C18 reverse phase flash chromatography (0-80% MeCN/10 mM aqueous ammonium bicarbonate, pH=10). Appropriate fractions combined and lyophilized to provide N-(2,4-dimethoxybenzyl)-4-(((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)-cyclohexyl)oxy)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide (28 mg, 68% yield). LCMS (ESI) m/z: 688.9 (M+H)+.
Following the procedure described in Example 1 Step s and making non-critical variations as required to replace N-(2,4-dimethoxybenzyl)-4-((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)-cyclohexyl)-6-fluoro-3-oxo-N-(pyrimidin-4-yl)-3,4-dihydro-2H-benzo[b][1,4]oxazine-7-sulfonamide with N-(2,4-dimethoxybenzyl)-4-(((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)-cyclohexyl)oxy)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide, 4-(((1S,2S,4S)-2-(Dimethylamino)-4-(3-(trifluoromethyl)-phenyl)cyclohexyl)oxy)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide formate was obtained. LCMS (ESI) m/z: 538.9 (M+H)+. 1H NMR (500 MHz, d6-DMSO) δ 8.40 (s, 1H), 8.08 (d, J=5.9 Hz, 1H), 7.79 (t, J=8.7 Hz, 1H), 7.64 (s, 1H), 7.63-7.52 (m, 3H), 6.98 (dd, J=12.2, 2.2 Hz, 1H), 6.91 (dd, J=8.8, 2.3 Hz, 1H), 6.76 (d, J=6.1 Hz, 1H), 4.73 (td, J=10.2, 4.1 Hz, 1H), 3.27-3.20 (m, 1H), 2.93-2.79 (m, 1H), 2.47 (s, 6H), 2.26-2.16 (m, 1H), 2.09-1.97 (m, 1H), 1.88-1.67 (m, 3H), 1.49 (td, J=12.6, 6.4 Hz, 1H).
Following the procedure described in Example 23 and making non-critical variations as required to replace tert-butyl ((1S,2S,4S)-2-amino-4-(3-(trifluoromethyl)phenyl)cyclohexyl)carbamate with (1S,2S,4S)-2-((tert-butyldimethylsilyl)oxy)-5-(3-(trifluoromethyl)phenyl)cyclohexanamine, the title compound was obtained as yellow oil. 1H NMR (400 MHz, CDCl3) δ 7.50-7.43 (m, 2H), 7.42-7.37 (m, 2H), 3.79-3.72 (m, 1H), 3.48-3.43 (m, 1H), 2.88-2.80 (m, 2H), 2.78-2.62 (m, 3H), 2.12-2.02 (m, 3H), 1.89-1.82 (m, 1H), 1.76-1.70 (m, 3H), 1.55-1.50 (m, 2H), 1.40-1.32 (m, 1H), 0.91 (s, 9H), 0.13-0.09 (m, 6H). LCMS (ESI) m/z: 428.3 [M+H]+.
Following the procedure described in Example 48 and making non-critical variations as required to replace (1S,2S,5S)-2-((tert-butyldimethylsilyl)oxy)-N,N-dimethyl-5-(3-(trifluoromethyl)-phenyl)cyclohexanamine with 1-((1S,2S,4S)-2-((tert-butyldimethylsilyl)oxy)-5-(3-(trifluoromethyl)phenyl)cyclohexyl)pyrrolidine, the title compound was obtained as a white solid. NMR (400 MHz, DMSO-d6) δ 8.43 (s, 1H), 8.19-8.05 (m, 1H), 7.75-7.53 (m, 5H), 7.47-7.38 (m, 1H), 6.81-6.73 (m, 1H), 4.87-4.45 (m, 1H), 3.80-3.63 (m, 1H), 3.26-3.16 (m, 2H), 3.00-2.85 (m, 2H), 2.46-2.42 (m, 1H), 2.29-2.17 (m, 2H), 1.90-1.65 (m, 7H), 1.64-1.46 (m, 1H). LCMS (ESI) m/z: 583.3 [M+H]+.
Following the procedure described in Example 48 and making non-critical variations as required to replace 1-iodo-3-(trifluoromethyl)benzene with 1-iodo-3-(trifluoromethoxy)benzene, the title compound was obtained as brown oil. 1H NMR (400 MHz, CDCl3) δ 7.34-7.28 (m, 1H), 7.13 (d, J=7.6 Hz, 1H), 7.17-7.04 (m, 2H), 3.35-3.27 (m, 1H), 2.78-2.72 (m, 1H), 2.72-2.63 (m, 1H), 2.06-2.00 (m, 1H), 2.00-1.95 (m, 1H), 1.92-1.85 (m, 1H), 1.53-1.47 (m, 2H), 1.45-1.35 (m, 1H), 0.93 (s, 9H), 0.13 (s, 3H), 0.12 (s, 3H).
Following the procedure described in Example 48 and making non-critical variations as required to replace (1S,2S,5S)-2-((tert-butyldimethylsilyl)oxy)-5-(3-(trifluoromethyl)phenyl)-cyclohexanamine with (1S,2S,5S)-2-((tert-butyldimethylsilyl)oxy)-5-(3-(trifluoromethoxy)phenyl)cyclohexanamine, the title compound was obtained as a white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.41 (s, 1H), 8.15 (s, 1H), 8.07 (d, J=6.4 Hz, 1H), 7.67-7.60 (m, 1H), 7.48-7.43 (m, 1H), 7.41-7.30 (m, 2H), 7.27 (s, 1H), 7.22 (d, J=8.0 Hz, 1H), 6.75-6.69 (m, 1H), 4.89-4.78 (m, 1H), 3.53-3.40 (m, 1H), 2.91-2.78 (m, 1H), 2.59 (s, 6H), 2.25-2.16 (m, 1H), 2.16-2.08 (m, 1H), 1.84-1.60 (m, 3H), 1.58-1.43 (m, 1H). LCMS (ESI) m/z: 573.2 [M+H]+.
Following the procedure described in Example 58 and making non-critical variations as required to replace N-(2,4-dimethoxybenzyl)-2,4,5-trifluoro-N-(pyrimidin-4-yl)benzenesulfonamide with 5-chloro-N-[(2,4-dimethoxyphenyl)methyl]-2,4-difluoro-N-pyrimidin-4-yl-benzenesulfonamide, the title compound was obtained as a white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.32 (s, 1H), 8.14 (s, 1H), 8.04-7.96 (s, 1H), 7.80 (d, J=7.6 Hz, 1H), 7.64-7.53 (m, 4H), 7.31 (d, J=11.6 Hz, 1H), 6.68-6.58 (m, 1H), 4.82-4.72 (m, 1H), 3.53-3.40 (m, 1H), 3.10-2.82 (m, 5H), 2.24-2.12 (m, 2H), 1.82-1.67 (m, 3H), 1.66-1.50 (m, 5H). LCMS (ESI) m/z: 599.2 [M+H]+.
Following the procedure described in Example 50 and making non-critical variations as required to replace 1-(2-fluoro-5-(trifluoromethyl)phenyl)ethanone with 1-(3-(trifluoromethoxy)-phenyl)ethanone, the title compound was obtained as a white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.36 (s, 1H), 8.15 (s, 1H), 8.02 (d, J=6.0 Hz, 1H), 7.49-7.34 (m, 3H), 7.31 (s, 1H), 7.21 (d, J=8.4 Hz, 1H), 6.80-6.72 (m, 1H), 6.66 (d, J=5.6 Hz, 1H), 6.13 (d, J=8.4 Hz, 1H), 3.78-3.62 (m, 1H), 3.42-3.39 (m, 1H), 3.17-3.08 (m, 2H), 3.04-2.91 (m, 2H), 2.81-2.71 (m, 1H), 2.17-2.09 (m, 1H), 2.08-1.99 (m, 1H), 1.79-1.63 (m, 7H), 1.49-1.35 (m, 1H). LCMS (ESI) m/z: 598.2 [M+H]+.
Following the procedure described in Example 23 and making non-critical variations as required to replace 1,4-dibromobutane with 1,5-dibromopentane, the title compound was obtained as a white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.55 (s, 1H), 8.27 (d, J=6.0 Hz, 1H), 8.13 (s, 1H), 7.64-7.46 (m, 5H), 6.91 (d, J=6.0 Hz, 1H), 6.83-6.75 (m, 1H), 6.18-6.07 (m, 1H), 3.70-3.56 (m, 1H), 2.97-2.83 (m, 1H), 2.81-2.61 (m, 4H), 2.53-2.52 (m, 1H), 2.13-1.97 (m, 2H), 1.81-1.56 (m, 3H), 1.51-1.19 (m, 7H). LCMS (ESI) m/z: 596.1 [M+H]+.
To a solution of (1S,2S,5S)-2-((tert-butyldimethylsilyl)oxy)-5-(3-(trifluoromethyl)phenyl)-cyclohexanamine (920 mg, 2.46 mmol) in THF (8 mL) and water (8 mL) was added sodium hydroxide (118 mg, 2.96 mmol) and di-tert-butyl dicarbonate (2.15 g, 9.85 mmol). The mixture was stirred at room temperature for 16 h. The reaction was extracted with EtOAc (20 mL×3). The combined organic layers were dried over anhydrous Na2SO4, filtered and concentrated in vacuo. The crude residue was purified by silica gel chromatography (solvent gradient: 0-4% EtOAc in petroleum ether) to give the title compound (120 mg, 10%) as colorless oil. 1H NMR (400 MHz, CDCl3) δ 7.47-7.41 (m, 2H), 7.40-7.35 (m, 2H), 4.48-4.41 (m, 1H), 3.55-3.42 (m, 2H), 2.77-2.74 (m, 1H), 2.30-2.25 (m, 1H), 2.08-2.04 (m, 1H), 1.92-1.87 (m, 1H), 1.58-1.45 (m, 3H), 1.43 (s, 9H), 0.91 (s, 9H), 0.10 (s, 6H).
To a solution of tert-butyl ((1S,2S,5S)-2-((tert-butyldimethylsilyl)oxy)-5-(3-(trifluoromethyl)-phenyl)cyclohexyl)carbamate (120 mg, 0.25 mmol) in THF (4 mL) at 0° C. was added sodium hydride (60%, 51 mg, 1.27 mmol). The mixture was stirred at 0° C. for 0.5 h and iodomethane (0.16 mL, 2.53 mmol) was added. The mixture was stirred at room temperature for an additional 16 h. Sat. aq. NH4Cl (20 mL) was added and extracted with EtOAc (20 mL×2). The combined organic layers were washed with brine (30 mL), dried over anhydrous Na2SO4, filtered and concentrated in vacuo. The crude residue was purified by Prep-TLC (EtOAc/petroleum ether=1:9) to give the title compound (22 mg, 18%) as colorless oil. LCMS (ESI) m/z: 388.3 [M+H−Boc]+.
To a solution of tert-butyl ((1S,2S,5S)-2-((tert-butyldimethylsilyl)oxy)-5-(3-(trifluoromethyl)phenyl)cyclohexyl)(methyl)carbamate (37 mg, 0.08 mmol) in THF (1 mL) was added tetrabutylammonium fluoride in THF (0.38 mL, 0.38 mmol, 1 M). The mixture was stirred at room temperature for 3 h. Ice water (20 mL) was added and extracted with EtOAc (20 mL×2). The combined organic layers were washed with brine (80 mL), dried over anhydrous Na2SO4, filtered and concentrated in vacuo. The crude residue was purified by Prep-TLC (DCM/MeOH=20:1) to give the title compound (25 mg, 88%) as a white solid. 1H NMR (400 MHz, CDCl3) δ 7.51-7.36 (m, 4H), 4.18-4.02 (m, 1H), 3.72-3.62 (m, 1H), 2.87-2.75 (m, 1H), 2.83 (s, 3H), 2.28-2.20 (m, 1H), 1.94-1.91 (m, 2H), 1.68-1.64 (m, 1H), 1.57-1.55 (m, 2H), 1.48 (s, 9H).
To a solution of sodium hydride (60%, 10 mg, 0.25 mmol) in DMF (1 mL) at 0° C. was added tert-butyl ((1S,2S,5S)-2-hydroxy-5-(3-(trifluoromethyl)phenyl)cyclohexyl)(methyl)carbamate (62 mg, 0.17 mmol) in DMF (2 mL). The mixture was stirred at 0° C. for 30 min. 5-chloro-N-(2,4-dimethoxybenzyl)-2,4-difluoro-N-(pyrimidin-4-yl)benzenesulfonamide (98 mg, 0.22 mmol) in DMF (0.5 mL) was added and stirred at room temperature for an additional 2 h. The reaction was quenched with sat. aq. NH4Cl (3 mL) at 0° C. and extracted with EtOAc (60 mL). The organic layer was washed with brine (30 mL×3), dried over anhydrous Na2SO4, filtered and concentrated in vacuo. The crude residue was purified by Prep-TLC (EtOAc/petroleum ether=4:1) to give the title compound (85 mg, 63%) as colorless oil. 1H NMR (400 MHz, CDCl3) δ 8.80 (s, 1H), 8.52-8.45 (m, 1H), 8.04 (d, J=7.6 Hz, 1H), 7.53-7.42 (m, 5H), 7.24-7.19 (m, 2H), 6.46-6.38 (m, 2H), 5.27-5.23 (m, 2H), 3.82 (s, 3H), 3.78 (s, 3H), 3.52-3.48 (m, 1H), 2.81-2.79 (m, 2H), 2.36-2.27 (m, 1H), 2.18 (s, 3H), 2.04-1.98 (m, 1H), 1.78-1.62 (m, 2H), 1.52-1.46 (m, 2H), 1.35 (s, 9H).
A mixture of tert-butyl ((1S,2S,5S)-2-(2-chloro-4-(N-(2,4-dimethoxybenzyl)-N-(pyrimidin-4-yl)sulfamoyl)-5-fluorophenoxy)-5-(3-(trifluoromethyl)phenyl)cyclohexyl)(methyl)carbamate (86 mg, 0.11 mmol) and formic acid (1 mL) was stirred at room temperature for 2 h. The mixture was concentrated in vacuo. The crude residue was purified by reverse phase chromatography (acetonitrile 15-45%/0.225% formic acid in water) to give the title compound (22 mg, 36%) as a white solid. 1H NMR (400 MHz, CDCl3) δ 8.50-8.32 (m, 1H), 8.18-8.07 (m, 1H), 7.92-7.84 (m, 1H), 7.56-7.38 (m, 4H), 7.06-6.89 (m, 1H), 6.83-6.79 (m, 1H), 5.16-4.98 (m, 1H), 3.38-3.35 (m, 1H), 2.88-2.73 (m, 1H), 2.82 (s, 3H), 2.46-2.26 (m, 3H), 2.04-1.98 (m, 1H), 1.97-1.78 (m, 1H), 1.76-1.62 (m, 1H). LCMS (ESI) m/z: 559.1 [M+H]+.
Following the procedure described in Example 60 and making non-critical variations as required to replace (1S,2S,4S)-2-((tert-butyldimethylsilyl)oxy)-5-(3-(trifluoromethyl)phenyl)-cyclohexanamine with (1S,2S,5S)-2-((tert-butyldimethylsilyl)oxy)-5-(3-(trifluoromethoxy)phenyl)cyclohexanamine, the title compound was obtained as a white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.34 (s, 1H), 8.17 (s, 1H), 8.02 (d, J=6.0 Hz, 1H), 7.80 (d, J=7.2 Hz, 1H), 7.50-7.42 (m, 1H), 7.36-7.28 (m, 2H), 7.25 (s, 1H), 7.21 (d, J=8.0 Hz, 1H), 6.65 (d, J=5.6 Hz, 1H), 4.89-4.80 (m, 1H), 3.57-3.46 (m, 1H), 3.18-3.02 (m, 4H), 2.91-2.79 (m, 1H), 2.25-2.13 (m, 2H), 1.84-1.70 (m, 3H), 1.70-1.61 (m, 4H), 1.58-1.47 (m, 1H). LCMS (ESI) m/z: 615.2 [M+H]+.
Following the procedure described in Example 66 and making non-critical variations as required to replace 1-iodo-3-(trifluoromethyl)benzene with 1,4-dichloro-2-iodobenzene, the title compound was obtained as yellow oil. 1H NMR (400 MHz, CDCl3) δ 7.31-7.27 (m, 1H), 7.22 (d, J=2.8 Hz, 1H), 7.15-7.10 (m, 1H), 3.34-3.22 (m, 1H), 3.19-3.07 (m, 1H), 2.74-2.63 (m, 1H), 2.18-2.12 (m, 1H), 2.09-2.03 (m, 1H), 1.93-1.90 (m, 1H), 1.58-1.43 (m, 2H), 1.40-1.30 (m, 1H). LCMS (ESI) m/z: 259.8 [M+H]+.
Following the procedure described in Example 48 and making non-critical variations as required to replace (1S,2S,5S)-2-((tert-butyldimethylsilyl)oxy)-5-(3-(trifluoromethyl)phenyl)cyclohexanamine with (1S,2S,4S)-2-amino-4-(2,5-dichlorophenyl)cyclohexanol, the title compound was obtained as light yellow oil.
Following the procedure described in Example 48 and making non-critical variations as required to replace (1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)cyclohexanol and N-(2,4-dimethoxybenzyl)-2,4,5-trifluoro-N-(pyrimidin-4-yl)benzenesulfonamide with (1S,2S,4S)-4-(2,5-dichlorophenyl)-2-(dimethylamino)cyclohexanol and 5-chloro-N-(2,4-dimethoxybenzyl)-2,4-difluoro-N-(pyrimidin-4-yl)benzenesulfonamide, the title compound was obtained as a white solid. 1H NMR (400 MHz, CD3OD) δ 8.43 (s, 1H), 8.32 (s, 1H), 8.12 (d, J=6.0 Hz, 1H), 8.03 (d, J=7.6 Hz, 1H), 7.49 (d, J=2.4 Hz, 1H), 7.41 (d, J=8.4 Hz, 1H), 7.32-7.19 (m, 2H), 6.87 (d, J=6.4 Hz, 1H), 5.00-4.93 (m, 1H), 3.98-3.88 (m, 1H), 3.43-3.33 (m, 1H), 2.94 (s, 6H), 2.42-2.27 (m, 2H), 2.06-1.90 (m, 2H), 1.74-1.62 (m, 2H). LCMS (ESI) m/z: 573.0 [M+H]+.
To a solution of 2-pyridine carboxylic acid (30.0 g, 243.68 mmol) in DCM (1.02 L) at 0° C. was added N,N-diisopropylethylamine (106.11 mL, 609.21 mmol), HATU (111.19 g, 292.42 mmol) and (1S,2S)-2-aminocyclohexanol hydrochloride (44.34 g, 292.42 mmol). The mixture was stirred at room temperature for 16 h. Imidazole (24.9 g, 365.69 mmol) and TBSCl (47.77 g, 316.93 mmol) at 0° C. were added and stirred at room temperature for an additional 16 h. The reaction was quenched with sat. aq. NaHCO3(350 mL). The organic layer was washed with brine (350 mL), dried over anhydrous Na2SO4, filtered and concentrated in vacuo. The crude residue was purified by silica gel chromatography (petroleum ether/EtOAc=3:1) to give the title compound (62 g, 76%) as a yellow solid. 1H NMR (400 MHz, CDCl3) δ 8.54 (d, J=4.4 Hz, 1H), 8.21 (d, J=7.6 Hz, 1H), 8.05 (d, J=8.0 Hz, 1H), 7.90-7.80 (m, 1H), 7.44-7.38 (m, 1H), 3.94-3.82 (m, 1H), 3.68-3.54 (m, 1H), 2.24-2.13 (m, 1H), 1.97-1.87 (m, 1H), 1.81-1.63 (m, 2H), 1.55-1.26 (m, 4H), 0.79 (s, 9H), 0.06 (s, 3H), 0.01 (s, 3H).
A round bottom flask (250 mL) equipped with a magnetic stirring bar and covered with aluminum foil (to avoid light) was charged with disilver carbonate (8.24 g, 29.89 mmol), 2,6-dimethylbenzoic acid (1.12 g, 7.47 mmol), 1-iodo-3-(trifluoromethyl)benzene (48.79 g, 179.36 mmol) and N-((1S,2S)-2-((tert-butyldimethylsilyl)oxy)cyclohexyl)picolinamide (10.0 g, 29.89 mmol) and palladium(II) acetate (0.67 g, 2.99 mmol). The mixture was heated to 120° C. for 16 h under a nitrogen atmosphere. Additionally, the oil bath was covered with aluminum foil to avoid contact with light. After cooling to room temperature, the mixture was purified by silica gel chromatography (petroleum ether/EtOAc=10:1) to give the title compound (5.7 g, 40%) as a yellow solid. 1H NMR (400 MHz, CDCl3) δ 8.53 (d, J=4.8 Hz, 1H), 8.19 (d, J=7.8 Hz, 1H), 8.09 (d, J=7.8 Hz, 1H), 7.89-7.81 (m, 1H), 7.51-7.39 (m, 5H), 4.16-4.00 (m, 1H), 3.80-3.64 (m, 1H), 2.93-2.80 (m, 1H), 2.50-2.30 (m, 1H), 2.20-2.05 (m, 1H), 2.01-1.81 (m, 2H), 1.76-1.59 (m, 2H), 0.80 (s, 9H), 0.10 (s, 3H), 0.00 (s, 3H).
To a solution of N-((1S,2S,5S)-2-((tert-butyldimethylsilyl)oxy)-5-(3-(trifluoromethyl)phenyl)-cyclohexyl)picolinamide (10.0 g, 20.89 mmol) in 2-propanol (100 mL) was added hydroxysodium (12.54 g, 313.4 mmol). The mixture was heated to 80° C. for 16 h. After cooling to room temperature, the reaction was concentrated in vacuo. Brine (50 mL) was added and extracted with DCM (60 mL×3). The combined organic layers were dried over anhydrous Na2SO4, filtered and concentrated in vacuo to give the title compound (5.19 g, 96%) as yellow oil that required no further purification. 1H NMR (400 MHz, CDCl3) δ 7.52-7.37 (m, 4H), 3.34-3.24 (m, 1H), 2.81-2.71 (m, 1H), 2.70-2.61 (m, 1H), 2.19-2.12 (m, 1H), 2.11-2.06 (m, 1H), 2.00-1.81 (m, 4H), 1.64-1.48 (m, 2H), 1.48-1.38 (m, 1H).
Following the procedure described in Example 40 and making non-critical variations as required to replace cyclobutanone with 2-((tert-butyldimethylsilyl)oxy)acetaldehyde, the title compound was obtained as colorless oil. LCMS (ESI) m/z: 432.3 [M+H]+.
Following the procedure described in Example 48 and making non-critical variations as required to replace (1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)cyclohexanol and N-(2,4-dimethoxybenzyl)-2,4,5-trifluoro-N-(pyrimidin-4-yl)benzenesulfonamide with (1S,2S,4S)-2-((2-((tert-butyldimethylsilyl)oxy)ethyl)(methyl)amino)-4-(3-(trifluoromethyl)phenyl)cyclohexanol and 5-chloro-N-(2,4-dimethoxybenzyl)-2,4-difluoro-N-(pyrimidin-4-yl)benzenesulfonamide, the title compound was obtained as a white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.46 (s, 1H), 8.17-8.10 (m, 2H), 7.86-7.80 (m, 1H), 7.63-7.56 (m, 4H), 7.40-7.32 (m, 1H), 6.84-6.76 (m, 1H), 4.88-4.77 (m, 1H), 3.48-3.38 (m, 3H), 2.94-2.93 (m, 3H), 2.40 (s, 3H), 2.23-2.14 (m, 1H), 2.07-1.95 (m, 1H), 1.80-1.65 (m, 3H), 1.58-1.47 (m, 1H). LCMS (ESI) m/z: 603.2 [M+H]+.
Following the procedure described in Example 65 and making non-critical variations as required to replace 1,4-dichloro-2-iodobenzene with 1,2-dichloro-4-iodobenzene, the title compound was obtained as a white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.34 (s, 1H), 8.10 (s, 1H), 8.02 (d, J=4.0 Hz, 1H), 7.79 (d, J=8 Hz, 1H), 7.58-7.50 (m, 2H), 7.32-7.21 (m, 2H), 6.64 (d, J=4.0 Hz, 1H), 4.81-4.72 (m, 1H), 3.30-3.25 (m, 1H), 2.77-2.74 (m, 1H), 2.51 (s, 6H), 2.14-2.12 (m, 1H), 1.98-1.97 (m, 1H), 1.77-1.37 (m, 4H). LCMS (ESI) m/z: 572.8 [M+H]+.
Following the procedure described in Example 63 and making non-critical variations as required to replace iodomethane with iodoethane, the title compound was obtained as a white solid. 1H NMR (400 MHz, CDCl3) δ 8.45 (s, 1H), 8.16 (s, 1H), 7.91 (d, J=6.8 Hz, 1H), 7.57-7.38 (m, 5H), 7.02-6.85 (m, 1H), 6.79 (d, J=10.0 Hz, 1H), 5.03-4.88 (m, 1H), 3.48-3.21 (m, 2H), 3.16-3.03 (m, 1H), 2.86-2.74 (m, 1H), 2.44-2.30 (m, 3H), 2.06-1.96 (m, 1H), 1.93-1.76 (m, 1H), 1.73-1.60 (m, 1H), 1.36 (t, J=6.8 Hz, 3H). LCMS (ESI) m/z: 573.1 [M+H]+.
Following the procedure described in Example 66 and making non-critical variations as required to replace 2-((tert-butyldimethylsilyl)oxy)acetaldehyde with tert-butyl methyl(2-oxoethyl)carbamate, the title compound was obtained as a white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.28-8.26 (m, 1H), 8.14-8.10 (m, 1H), 7.96-7.89 (m, 1H), 7.78-7.71 (m, 1H), 7.59-7.50 (m, 4H), 7.28-7.19 (m, 1H), 6.58-6.50 (m, 1H), 4.78-4.66 (m, 1H), 2.99-2.75 (m, 6H), 2.53 (s, 3H), 2.26 (s, 3H), 2.22-2.14 (m, 1H), 1.99-1.90 (m, 1H), 1.80-1.64 (m, 3H), 1.54-1.36 (m, 1H). LCMS (ESI) m/z: 616.3 [M+H]+.
Following the procedure described in Example 50 and making non-critical variations as required to replace 1-(2-fluoro-5-(trifluoromethyl)phenyl)ethanone with 1-(2-fluoro-3-(trifluoromethyl)phenyl)ethanone, the title compound was obtained as a white solid. 1H NMR (400 MHz, DMSO-d6) δ 10.07-9.84 (m, 1H), 8.75-8.65 (m, 1H), 8.40-8.34 (m, 1H), 7.83-7.75 (m, 1H), 7.71-7.64 (m, 1H), 7.60-7.52 (m, 1H), 7.48-7.41 (m, 1H), 7.09-6.99 (m, 2H), 6.80-6.70 (m, 1H), 4.07-4.03 (m, 1H), 3.78-3.69 (m, 1H), 3.48-3.25 (m, 3H), 3.19-3.00 (m, 2H), 2.30-2.21 (m, 1H), 2.04-1.89 (m, 2H), 1.87-1.70 (m, 6H), 1.59-1.45 (m, 1H). LCMS (ESI) m/z: 600.1 [M+H]+.
Rac-trans-methyl 4-((tert-butoxycarbonyl)amino)piperidine-3-carboxylate (1434 mg, 5.55 mmol) was dissolved in a mixture of THF (14 mL) and water (14 mL) and cooled to 0° C. Sodium bicarbonate (1865 mg, 22.2 mmol) was added followed by the addition of benzylchloroformate (1041 mg, 6.11 mmol) dropwise. The resulting mixture was stirred for 16 h allowing to warm to rt then diluted with ethyl acetate (75 mL) and H2O (25 mL) and the phases were separated. The organic extract was washed with saturated aqueous NaHCO3(10 mL), then saturated aqueous NaCl (10 mL), dried over Na2SO4, filtered and evaporated under reduced pressure. The crude product was purified by flash column chromatography through Si gel (MeOH/DCM) to provide rac-(3S,4S)-1-benzyl 3-methyl 4-((tert-butoxycarbonyl)amino)piperidine-1,3-dicarboxylate (1730 mg, 79% yield). LCMS (ESI) m/z: 293.1 [M−Boc+H]+.
In a flask containing rac-(3S,4S)-1-benzyl 3-methyl 4-((tert-butoxycarbonyl)amino)piperidine-1,3-dicarboxylate (1730 mg, 4.41 mmol) was added 1,4-dioxane (13.5 mL), methanol (1.5 mL) and 5N NaOH (5.3 mL, 26 mmol). After stirring at rt for 16 h, saturated aqueous NaCl (25 mL) was added followed by concentrated HCl (2.0 mL). Ethyl acetate (50 mL) was then added and the phases were separated. The aqueous phase was extracted again with ethyl acetate (2×50 mL) and the combined organic extracts washed with brine (100 mL), dried over sodium sulfate, filtered and concentrate to provide rac-(3S,4S)-1-((benzyloxy)carbonyl)-4-((tert-butoxycarbonyl)amino)piperidine-3-carboxylic acid (1668 mg, 100% yield). LCMS (ESI) m/z: 377.1 [M−H]−.
To a solution of rac-(3S,4S)-1-((benzyloxy)carbonyl)-4-((tert-butoxycarbonyl)amino)piperidine-3-carboxylic acid (1668 mg, 4.41 mmol) in toluene (11 mL) was added diisopropylethylamine (1.17 mL, 6.61 mmol) and diphenylphosphoryl azide (1.14 mL, 5.29 mmol). The mixture was then heated to 100° C. for 80 min, cooled to rt and purified directly by flash column chromatography through Si gel (EtOAc/DCM) to provide rac-(3S,4S)-Benzyl 4-((tert-butoxycarbonyl)amino)-3-isocyanatopiperidine-1-carboxylate (592 mg, 36% yield). LCMS (ESI) m/z: 276.1 [M−Boc+H]+.
To a solution of rac-(3S,4S)-Benzyl 4-((tert-butoxycarbonyl)amino)-3-isocyanatopiperidine-1-carboxylate (590 mg, 1.57 mmol) in THF (0.48 mL) was added potassium trimethylsilanolate (222 mg, 1.73 mmol) and the mixture stirred at rt. After 90 min, the mixture was diluted with saturated aqueous NaCl (20 mL) and EtOAc (50 mL). The phases were separated and the organic extract washed with brine (20 mL), dried over Na2SO4, filtered and evaporated under reduced pressure to provide rac-(3S,4S)-benzyl 3-amino-4-((tert-butoxycarbonyl)amino)piperidine-1-carboxylate (548 mg, 99% yield). LCMS (ESI) m/z: 350.2 [M+H]+.
To a solution of rac-(3S,4S)-benzyl 3-amino-4-((tert-butoxycarbonyl)amino)piperidine-1-carboxylate (700 mg, 2.00 mmol) in methanol (4.00 mL) was added formaldehyde (30% w/w in water, 0.99 mL, 29.8 mmol), followed by sodium cyanoborohydride (1.24 g, 20.0 mmol) and the mixture stirred at rt. After 3 h, the mixture was diluted with saturated aqueous NaHCO3(5 mL) and extracted with EtOAc (2×10 mL). The combined organic extracts were washed with brine (5 mL), dried over Na2SO4 and evaporated. The crude product was purified by flash column chromatography through Si gel (MeOH/DCM) to provide rac-(3S,4S)-benzyl 4-((tert-butoxycarbonyl)amino)-3-(dimethylamino)piperidine-1-carboxylate (481 mg, 64% yield). LCMS (ESI) m/z: 378.0 [M+H]+.
To a solution of rac-(3S,4S)-benzyl 4-((tert-butoxycarbonyl)amino)-3-(dimethylamino)piperidine-1-carboxylate (480 mg, 1.27 mmol) in 1,4-dioxane (6.36 mL) was added 4M HCl in dioxanes (3.5 mL, 14 mmol) and stirred at rt. After 2 h, the mixture was concentrated to dryness and diluted with DCM (25 mL) and hexanes (25 mL) and the volatiles were evaporated again. This process was repeated twice to provide rac-(3S,4S)-benzyl 4-amino-3-(dimethylamino)piperidine-1-carboxylate hydrochloride (399 mg, 100% yield). LCMS (ESI) m/z: 278.0 [M+H]+.
In a flask containing rac-(3S,4S)-benzyl 4-amino-3-(dimethylamino)piperidine-1-carboxylate hydrochloride (395 mg, 1.26 mmol) was added DMF (12.6 mL), diisopropylethylamine (0.89 mL, 5.03 mmol) and 5-chloro-N-[(2,4-dimethoxyphenyl)methyl]-2,4-difluoro-N-pyrimidin-4-yl-benzenesulfonamide prepared in Example 4 (746 mg, 1.64 mmol) and the mixture stirred at 65° C. After 16 h, the reaction was diluted with EtOAc (20 mL) and saturated aqueous NaHCO3 (50 mL) and the phases were separated. The aqueous phase was extracted again with EtOAc (2×20 mL), and the combined organic extracts washed with brine (50 mL), dried over Na2SO4 and evaporated. The crude product was purified by flash column chromatography through Si gel (EtOAc/DCM) to provide rac-(3S,4S)-benzyl 4-((2-chloro-4-(N-(2,4-dimethoxybenzyl)-N-(pyrimidin-4-yl)sulfamoyl)-5-fluorophenyl)amino)-3-(dimethylamino)piperidine-1-carboxylate (686 mg, 76% yield). LCMS (ESI) m/z: 713.3, 715.3 [M+H]+.
Pd/C (10% w/w, 60 mg) was added to a mixture of i-PrOH (3.47 mL) and ethyl acetate (0.73 mL). To this suspension was added rac-(3S,4S)-benzyl 4-((2-chloro-4-(N-(2,4-dimethoxybenzyl)-N-(pyrimidin-4-yl)sulfamoyl)-5-fluorophenyl)amino)-3-(dimethylamino)piperidine-1-carboxylate (300 mg, 0.42 mmol) followed by ammonium formate (2.65 g, 42.1 mmol). The reaction mixture was stirred at rt for 2 h then diluted with water (50 mL) and the mixture was extracted with EtOAc (2×20 mL). The combined organic extracts were filtered through a pad of celite eluting with EtOAc and the filtrate was concentrated to provide the crude Cbz deprotected racemic material. The crude Cbz deprotected racemic material was separated using chiral SFC (ChiralPak AS-H, 10×250 mm 5 um, 30% MeOH+10 mM AmF, 10 mL/min, 150 bar, Column Temp: 40° C., run time: 16 min) to afford: 5-chloro-N-(2,4-dimethoxybenzyl)-4-(((3S,4S)-3-(dimethylamino)piperidin-4-yl)amino)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide (60 mg, 25%), LCMS (ESI) m/z: 579.2, 581.2 [M+H]+; and 5-chloro-N-(2,4-dimethoxybenzyl)-4-(((3R,4R)-3-(dimethylamino)piperidin-4-yl)amino)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide (60 mg, 25%), LCMS (ESI) m/z: 579.2, 581.2 [M+H]+. Absolute stereochemistry was arbitrarily assigned to each enantiomer.
In a flask containing 5-chloro-N-(2,4-dimethoxybenzyl)-4-(((3S,4S)-3-(dimethylamino)piperidin-4-yl)amino)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide (40 mg, 0.07 mmol), 2-bromo-4-(trifluoromethyl)pyridine (0.01 mL, 0.07 mmol), sodium tert-butoxide (12.8 mg, 0.13 mmol) and chloro(2-dicyclohexylphosphino-2′,4′,6′-tri-i-propyl-1,1′-biphenyl)[2,-(2-aminoethyl)phenyl]palladium(II) methyl-t-butylether adduct (9.81 mg, 0.01 mmol) was added degassed 1,4-dioxane (0.27 mL). The flask was purged with nitrogen and the reaction was irradiated in a microwave reactor at 120° C. for 30 minutes. The reaction mixture was then diluted with EtOAc (10 mL) and saturated aqueous NaHCO3(20 mL) and the phases were separated. The aqueous phase was extracted again with EtOAc (10 mL), and the combined organic extracts dried over Na2SO4 and evaporated. The crude products were purified by flash column chromatography through Si gel (MeOH/DCM) to provide 5-chloro-N-(2,4-dimethoxybenzyl)-4-(((3S,4S)-3-(dimethylamino)-1-(4-(trifluoromethyl)pyridin-2-yl)piperidin-4-yl)amino)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide (14 mg, 29% yield). LCMS (ESI) m/z: 724.2 [M+H]+. In addition, N-(2,4-dimethoxybenzyl)-4-(((3S,4S)-3-(dimethylamino)-1-(4-(trifluoromethyl)pyridin-2-yl)piperidin-4-yl)amino)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide (11 mg, 24% yield) was also obtained. LCMS (ESI) m/z: 690.2 [M+H]+.
Following the procedure described in Example 1 Step s and making non-critical variations as required to replace N-(2,4-dimethoxybenzyl)-4-((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)-cyclohexyl)-6-fluoro-3-oxo-N-(pyrimidin-4-yl)-3,4-dihydro-2H-benzo[b][1,4]oxazine-7-sulfonamide with 5-chloro-N-(2,4-dimethoxybenzyl)-4-(((3S,4S)-3-(dimethylamino)-1-(4-(trifluoromethyl)pyridin-2-yl)piperidin-4-yl)amino)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide, 5-chloro-4-(((3S,4S)-3-(dimethylamino)-1-(4-(trifluoromethyl)pyridin-2-yl)piperidin-4-yl)amino)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide formate was obtained. LCMS (ESI) m/z: 574.1, 576.1 [M+H]+. 1H NMR (500 MHz, d6-DMSO) δ 8.33 (d, J=5.0 Hz, 1H), 8.27 (s, 1H), 8.15 (s, 1H), 7.91 (d, J=5.8 Hz, 1H), 7.57 (d, J=7.3 Hz, 1H), 7.10 (s, 1H), 6.84 (d, J=5.7 Hz, 1H), 6.72 (d, J=12.7 Hz, 1H), 6.54 (d, J=6.1 Hz, 1H), 5.56 (d, J=5.9 Hz, 1H), 4.54 (d, J=11.7 Hz, 1H), 4.29 (d, J=13.9 Hz, 1H), 3.75-3.68 (m, 1H), 3.05 (td, J=13.3, 2.5 Hz, 1H), 2.88 (dd, J=12.9, 11.2 Hz, 1H), 2.76-2.68 (m, 1H), 2.30 (s, 6H), 2.10-2.04 (m, 1H), 1.37 (d, J=15.0 Hz, 1H).
Following the procedure described in Example 1 Step s and making non-critical variations as required to replace N-(2,4-dimethoxybenzyl)-4-((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)-cyclohexyl)-6-fluoro-3-oxo-N-(pyrimidin-4-yl)-3,4-dihydro-2H-benzo[b][1,4]oxazine-7-sulfonamide with N-(2,4-dimethoxybenzyl)-4-(((3S,4S)-3-(dimethylamino)-1-(4-(trifluoromethyl)pyridin-2-yl)piperidin-4-yl)amino)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide, 4-(((3S,4S)-3-(dimethylamino)-1-(4-(trifluoromethyl)pyridin-2-yl)piperidin-4-yl)amino)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide formate was obtained. LCMS (ESI) m/z: 540.1 [M+H]+. 1H NMR (500 MHz, d6-DMSO) δ 8.32 (d, J=5.1 Hz, 2H), 8.17 (s, 1H), 7.95 (s, 1H), 7.46 (t, J=8.7 Hz, 1H), 7.08 (s, 1H), 6.83 (d, J=5.8 Hz, 1H), 6.65 (d, J=5.9 Hz, 1H), 6.42-6.34 (m, 2H), 6.12 (s, 1H), 4.46 (d, J=11.3 Hz, 1H), 4.20 (d, J=12.4 Hz, 1H), 3.73-3.65 (m, 1H), 3.07 (td, J=13.4, 2.5 Hz, 1H), 2.98 (dd, J=13.2, 10.7 Hz, 1H), 2.47-2.42 (m, 1H), 2.30 (s, 6H), 2.06 (d, J=10.3 Hz, 1H), 1.24 (ddd, J=16.0, 13.3, 4.0 Hz, 1H).
To a solution of 5-chloro-N-(2,4-dimethoxybenzyl)-4-(((3S,4S)-3-(dimethylamino)piperidin-4-yl)amino)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide prepare in Example 71 (25 mg, 0.04 mmol) in DCM (0.36 mL) was added N,N-diisopropylethylamine (31 uL, 0.17 mmol) followed by addition of 3-(trifluoromethyl)benzenesulfonyl chloride (8.3 uL, 0.05 mmol). The reaction mixture was stirred at room temperature for 2 h then diluted with DCM (10 mL), washed with saturated aqueous NaHCO3, dried over Na2SO4 and concentrated to provide crude 5-chloro-N-(2,4-dimethoxybenzyl)-4-(((3S,4S)-3-(dimethylamino)-1-((3-(trifluoromethyl)phenyl)sulfonyl)piperidin-4-yl)amino)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide (33 mg, 97% yield) which was used directly in the next step without further purification. LCMS (ESI) m/z: 787.2, 789.1 [M+H]+.
Following the procedure described in Example 1 Step s and making non-critical variations as required to replace N-(2,4-dimethoxybenzyl)-4-((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)-6-fluoro-3-oxo-N-(pyrimidin-4-yl)-3,4-dihydro-2H-benzo[b][1,4]oxazine-7-sulfonamide with 5-chloro-N-(2,4-dimethoxybenzyl)-4-(((3S,4S)-3-(dimethylamino)-1-((3-(trifluoromethyl)phenyl)sulfonyl)piperidin-4-yl)amino)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide, 5-chloro-4-(((3S,4S)-3-(dimethylamino)-1-((3-(trifluoromethyl)phenyl)sulfonyl)piperidin-4-yl)amino)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide formate was obtained. LCMS (ESI) m/z: 637.0, 639.0 [M+H]+. 1H NMR (500 MHz, d6-DMSO) δ 8.42 (s, 1H), 8.20-8.05 (m, 4H), 8.02 (s, 1H), 7.95 (t, J=7.9 Hz, 1H), 7.64-7.58 (m, 1H), 6.74 (d, J=3.9 Hz, 1H), 6.69 (d, J=13.1 Hz, 1H), 5.78 (s, 1H), 3.79 (d, J=9.6 Hz, 1H), 3.60 (d, J=11.7 Hz, 1H), 3.57-3.46 (m, 1H), 2.92 (td, J=10.7, 4.1 Hz, 1H), 2.42-2.35 (m, 1H), 2.27-2.16 (m, 7H), 2.00 (dd, J=13.2, 3.5 Hz, 1H), 1.47 (ddd, J=16.7, 13.0, 4.3 Hz, 1H).
Following the procedure described in Example 65 and making non-critical variations as required to replace 1,4-dichloro-2-iodobenzene with 1-fluoro-2-iodo-4-(trifluoromethyl)benzene, the title compound was obtained as a white solid. 1H NMR (400 MHz, CDCl3) δ 8.69 (s, 1H), 8.26 (d, J=6.4 Hz, 1H), 7.95 (d, J=7.6 Hz, 1H), 7.53 (d, J=6.8 Hz, 1H), 7.53-7.47 (m, 1H), 7.08-7.18 (m, 2H), 6.82 (d, J=11.6 Hz, 1H), 4.85-4.80 (m, 1H), 3.53-3.46 (m, 1H), 3.15-3.07 (m, 1H), 2.76 (s, 6H), 2.39-2.26 (m, 2H), 1.98-1.88 (m, 2H), 1.80-1.58 (m, 2H). LCMS (ESI) m/z: 591.1 [M+H]+.
Following the procedure described in Example 65 and making non-critical variations as required to replace 1,4-dichloro-2-iodobenzene with 1,2-dichloro-3-iodobenzene, the title compound was obtained as a white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.41 (s, 1H), 8.09 (d, J=6.4 Hz, 1H), 7.84 (d, J=7.6 Hz, 1H), 7.54 (dd, J=6.0, 3.6 Hz, 1H), 7.44-7.36 (m, 3H), 6.73 (d, J=6.4 Hz, 1H), 4.94-4.82 (m, 1H), 3.55-3.48 (m, 1H), 3.24-3.16 (m, 1H), 2.54 (s, 6H), 2.25-2.18 (m, 1H), 2.12-2.04 (m, 1H), 1.84-1.47 (m, 4H). LCMS (ESI) m/z: 573.0 [M+H]+.
Following the procedure described in Example 65 and making non-critical variations as required to replace 1,4-dichloro-2-iodobenzene with 4-iodo-2-(trifluoromethyl)pyridine, the title compound was obtained as a white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.71 (d, J=5.2 Hz, 1H), 8.43 (s, 1H), 8.14 (s, 1H), 8.10 (d, J=6.0 Hz, 1H), 7.85 (d, J=7.2 Hz, 1H), 7.82 (s, 1H), 7.63 (d, J=4.8 Hz, 1H), 7.37 (d, J=12.0 Hz, 1H), 6.75 (d, J=6.0 Hz, 1H), 4.91-4.80 (m, 1H), 3.44-3.32 (m, 1H), 3.02-2.91 (m, 1H), 2.55 (s, 6H), 2.26-2.16 (m, 1H), 2.16-2.07 (m, 1H), 1.88-1.63 (m, 3H), 1.58-1.44 (m, 1H). LCMS (ESI) m/z: 574.1 [M+H]+.
Following the procedure described in Example 52 and making non-critical variations as required to replace (3-(trifluoromethyl)phenyl)boronic acid with (2-(trifluoromethyl)phenyl)boronic acid, rac-(3S,4S)-dimethyl 2′-(trifluoromethyl)-2,3,4,5-tetrahydro-[1,1′-biphenyl]-3,4-dicarboxylate was obtained as a colorless oil. 1H NMR (400 MHz, CDCl3) δ 7.62 (d, J=7.9 Hz, 1H), 7.47 (t, J=7.6 Hz, 1H), 7.35 (t, J=7.6 Hz, 1H), 7.20 (d, J=7.5 Hz, 1H), 5.60 (q, J=2.0 Hz, 1H), 3.73 (s, 3H), 3.69 (s, 3H), 3.06 (dd, J=10.3, 5.6 Hz, 1H), 2.98 (td, J=10.4, 5.6 Hz, 1H), 2.61 (d, J=4.9 Hz, 1H), 2.59-2.53 (m, 1H), 2.53-2.41 (m, 1H), 2.41-2.27 (m, 1H).
Following the procedure described in Example 52 and making non-critical variations as required to replace rac-(3S,4S)-dimethyl 3′-(trifluoromethyl)-2,3,4,5-tetrahydro-[1,1′-biphenyl]-3,4-dicarboxylate with rac-(3S,4S)-dimethyl 2′-(trifluoromethyl)-2,3,4,5-tetrahydro-[1,1′-biphenyl]-3,4-dicarboxylate, rac-(3S,4S)-2′-(trifluoromethyl)-2,3,4,5-tetrahydro-[1,1′-biphenyl]-3,4-dicarboxylic acid was obtained as a beige solid. LCMS (ESI) m/z: 313.3 [M−H]−. 1H NMR (400 MHz, d4-MeOH) δ [2 OH signals not observed]7.58 (d, J=7.9 Hz, 1H), 7.44 (t, J=7.6 Hz, 1H), 7.32 (t, J=7.5 Hz, 1H), 7.18 (d, J=7.6 Hz, 1H), 5.56 (s, 1H), 2.95 (dd, J=9.3, 6.4 Hz, 1H), 2.87 (td, J=10.4, 5.7 Hz, 1H), 2.58 (d, J=17.6 Hz, 2H), 2.49-2.37 (m, 1H), 2.31 (dd, J=15.1, 12.2 Hz, 1H).
In a flask containing rac-(3S,4S)-2′-(trifluoromethyl)-2,3,4,5-tetrahydro-[1,1′-biphenyl]-3,4-dicarboxylic acid (1.00 g, 3.18 mmol) was added DMF (0.020 mL, 0.26 mmol) and oxalyl chloride (4.0 mL, 46 mmol). The suspension was stirred at room temperature and after 72 hours the mixture was concentrated to dryness, then dissolved in 1,4-dioxane (8 mL). It was again concentrated to dryness, redisssolved in 1,4-dioxane (8 mL) and trimethylsilyl azide (0.89 mL, 6.7 mmol) was added. After 1 hour, another portion of trimethylsilyl azide (0.23 ml) was added and after 90 minutes, another portion of trimethylsilyl azide (0.23 ml) was added. After 1 hour the mixture was heated to 90° C. (gas evolution occurred), for 1 hour. The mixture was cooled to 45° C. and benzyl alcohol (5.0 mL, 48 mmol) was added to the mixture and stirred at 45° C. After 72 hours, cooled to rt and water (50 ml) and EtOAc (100 ml) were added and the phases were separated. The organic phase was dried (sodium sulfate), filtered and concentrated to dryness. The crude mixture was purified by C18 reverse phase flash chromatography (5-100% MeCN/10 mM aqueous ammonium formate, pH=3.8). The appropriate fractions were combined and lyophilized to provide rac-(3aS,7aS)-benzyl 2-oxo-5-(2-(trifluoromethyl)phenyl)-2,3,3a,4,7,7a-hexahydro-1H-benzo[d]imidazole-1-carboxylate (500 mg, 38% yield) as a white solid. Mixture of Cbz-regioisomers. LCMS (ESI) m/z: 417.0 [M+H]+. Major isomer: 1H NMR (500 MHz, CDCl3) δ 7.64 (d, J=7.8 Hz, 1H), 7.54-7.44 (m, 2H), 7.43-7.28 (m, 5H), 7.24-7.15 (m, 1H), 5.61 (dd, J=7.0, 4.0 Hz, 1H), 5.40-5.20 (m, 3H), 3.81 (dtd, J=27.1, 11.0, 4.9 Hz, 1H), 3.54 (dtd, J=16.2, 11.3, 5.1 Hz, 1H), 3.20-3.03 (m, 1H), 2.64-2.44 (m, 2H), 2.44-2.23 (m, 1H).
In a flask was added rac-(3aS,7aS)-benzyl 2-oxo-5-(2-(trifluoromethyl)phenyl)-2,3,3a,4,7,7a-hexahydro-1H-benzo[d]imidazole-1-carboxylate (500 mg, 1.20 mmol), THF (3 mL) and 1M NaOH (3 mL, 3 mmol). The mixture was stirred for 3 hours at rt and then the phases were separated. The aqueous phase was extracted with THF (1 mL) and concentrated hydrochloric acid (3 mL, 36 mmol) was added to the combined organic extracts. This mixture was heated to 90° C. for 16 hours and then was cooled to room temperature. The phases were separated and the aqueous phase was washed with EtOAc (5 mL). The aqueous phase was basified to pH 5 with sodium hydroxide solution in water (50 wt %, 3 mL), sodium carbonate was added (1 g), followed with THF (5 mL) and di-tert-butyldicarbonate solution in 1,4-dioxane (1M, 2.5 mL, 2.5 mmol). After stirring for 1 hour, the phases were separated and the aqueous phase was extracted with EtOAc (10 ml). The combined organic extracts were concentrated to dryness, dissolved in DCM (5 mL), silica gel (5 mL) was added and the solvent was removed. The crude product on silica was purified by flash column chromatography through Si gel (DCM/hexanes) to provide rac-di-tert-butyl ((3S,4S)-2′-(trifluoromethyl)-2,3,4,5-tetrahydro-[1,1′-biphenyl]-3,4-diyl)dicarbamate (180 mg, 33% yield) as a white solid. LCMS (ESI) m/z: 457.2 [M+H]+. 1H NMR (500 MHz, CDCl3) δ 7.62 (d, J=7.8 Hz, 1H), 7.46 (t, J=7.4 Hz, 1H), 7.35 (d, J=7.7 Hz, 1H), 7.19 (d, J=7.7 Hz, 1H), 5.53-5.45 (m, 1H), 4.96 (d, J=7.3 Hz, 1H), 4.90 (d, J=7.6 Hz, 1H), 3.82 (ddd, J=15.0, 10.3, 5.8 Hz, 2H), 2.71-2.58 (m, 2H), 2.34-2.22 (m, 1H), 2.20-2.08 (m, 1H), 1.45 (s, 9H), 1.43 (s, 9H).
In a flask containing rac-di-tert-butyl ((3S,4S)-2′-(trifluoromethyl)-2,3,4,5-tetrahydro-[1,1′-biphenyl]-3,4-diyl)dicarbamate (170 mg, 0.37 mmol) was added ethyl acetate (5 mL), Pd/C 10% w/w wet (38 mg, 0.040 mmol) and hydrogen was bubbled for 10 min through the mixture. The flask was then stirred under hydrogen atmosphere for 16 hours. The mixture was filtered on Celite and washed with EtOAc and MeOH. The filtrate was concentrated in vacuo and the resulting residue was re-subjected to hydrogenation conditions as described above. After 24 h, the mixture was filtered on Celite and washed with EtOAc and MeOH and concentrated in vacuo to provide rac-di-tert-butyl ((1S,2S,4S)-4-(2-(trifluoromethyl)phenyl)cyclohexane-1,2-diyl)dicarbamate (150 mg, 88% yield) as a colorless oil as ˜2:1 mixture of diastereomers by NMR. LCMS (ESI) m/z: 481.2 [M+Na]+.
Following the procedure described in Example 4 and making non-critical variations as required to replace tert-butyl ((1S,2S,4S)-4-(3,4-dichlorophenyl)-2-(dimethylamino)cyclohexyl)carbamate with rac-di-tert-butyl ((1S,2S,4S)-4-(2-(trifluoromethyl)phenyl)cyclohexane-1,2-diyl)dicarbamate, crude rac-(1S,2S,4S)-4-(2-(trifluoromethyl)phenyl)cyclohexane-1,2-diamine dihydrochloride was obtained. LCMS (ESI) m/z: 259.0 [M+H]+.
Following the procedure described in Example 4 and making non-critical variations as required to replace (1S,2S,5S)-5-(3,4-dichlorophenyl)-N1,N1-dimethylcyclohexane-1,2-diamine with rac-(1S,2S,4S)-4-(2-(trifluoromethyl)phenyl)cyclohexane-1,2-diamine dihydrochloride and running the reaction at room temperature, rac-4-(((1S,2S,4S)-2-amino-4-(2-(trifluoromethyl)phenyl)cyclohexyl)amino)-5-chloro-N-(2,4-dimethoxybenzyl)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide was obtained. LCMS (ESI) m/z: 694.0 [M+H]+.
Following the procedure described in Example 1 Step n and making non-critical variations as required to replace tert-butyl ((1S,2S,4S)-2-amino-4-(3-(trifluoromethyl)phenyl)cyclohexyl)carbamate with rac-4-(((1S,2S,4S)-2-amino-4-(2-(trifluoromethyl)phenyl)cyclohexyl)amino)-5-chloro-N-(2,4-dimethoxybenzyl)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide, rac-5-chloro-N-(2,4-dimethoxybenzyl)-4-(((1S,2S,4S)-2-(dimethylamino)-4-(2-(trifluoromethyl)phenyl)cyclohexyl)amino)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide was obtained as an off-white solid. LCMS (ESI) m/z: 722.3 [M+H]+.
Rac-5-chloro-N-(2,4-dimethoxybenzyl)-4-(((1S,2S,4S)-2-(dimethylamino)-4-(2-(trifluoromethyl)-phenyl)cyclohexyl)amino)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide (60 mg, 0.083 mmol) was separated by chiral HPLC (Chiralpak IA 250 mm*20 mm, 5 um, MeOH:DCM:hexane 4:4:92 containing 0.1% of diethylamine, 15 ml/min) to afford: 5-chloro-N-(2,4-dimethoxybenzyl)-4-(((1S,2S,4S)-2-(dimethylamino)-4-(2-(trifluoromethyl)phenyl)cyclohexyl)amino)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide (peak-1, 23 mg, 38%) as an off-white solid, LCMS (ESI) m/z: 722.3 [M+H]+; and 5-chloro-N-(2,4-dimethoxybenzyl)-4-(((1R,2R,4R)-2-(dimethylamino)-4-(2-(trifluoromethyl)phenyl)cyclohexyl)amino)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide (peak-2, 23 mg, 38%) as an off-white solid, LCMS (ESI) m/z: 722.3 [M+H]+. Absolute configurations were arbitrarily assigned to each enantiomer.
Following the procedure described in Example 1 Step s and making non-critical variations as required to replace N-(2,4-dimethoxybenzyl)-4-((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)-cyclohexyl)-6-fluoro-3-oxo-N-(pyrimidin-4-yl)-3,4-dihydro-2H-benzo[b][1,4]oxazine-7-sulfonamide with 5-chloro-N-(2,4-dimethoxybenzyl)-4-(((1S,2S,4S)-2-(dimethylamino)-4-(2-(trifluoromethyl)phenyl)-cyclohexyl)amino)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide, 5-chloro-4-(((1S,2S,4S)-2-(dimethylamino)-4-(2-(trifluoromethyl)-phenyl)cyclohexyl)amino)-2-fluoro-N-(pyrimidin-4-yl)benzene-sulfonamide was obtained as a white solid. The absolute configuration was assigned arbitrarily. LCMS (ESI) m/z: 572.1 [M+H]+. 1H NMR (500 MHz, d6-DMSO) δ 13.20-11.48 (br s, 1H), 8.50 (s, 1H), 8.19 (d, J=6.0 Hz, 1H), 7.76 (d, J=7.3 Hz, 1H), 7.67 (t, J=7.1 Hz, 3H), 7.41 (t, J=7.3 Hz, 1H), 6.85 (d, J=6.0 Hz, 1H), 6.74 (d, J=12.9 Hz, 1H), 5.53 (d, J=6.9 Hz, 1H), 4.03 (d, J=3.7 Hz, 1H), 2.44-2.35 (m, 1H), 2.30 (s, 6H), 2.06-1.96 (m, 1H), 1.93 (d, J=11.5 Hz, 1H), 1.85 (d, J=14.7 Hz, 1H), 1.76-1.57 (m, 3H) [1C—H signal under DMSO peak].
Following the procedure described in Example 1 Step s and making non-critical variations as required to replace N-(2,4-dimethoxybenzyl)-4-((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)-cyclohexyl)-6-fluoro-3-oxo-N-(pyrimidin-4-yl)-3,4-dihydro-2H-benzo[b][1,4]oxazine-7-sulfonamide with 5-chloro-N-(2,4-dimethoxybenzyl)-4-(((1R,2R,4R)-2-(dimethylamino)-4-(2-(trifluoromethyl)phenyl-)cyclohexyl)amino)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide, 5-Chloro-4-(((1R,2R,4R)-2-(dimethylamino)-4-(2-(trifluoromethyl)-phenyl)cyclohexyl)amino)-2-fluoro-N-(pyrimidin-4-yl)benzene-sulfonamide was obtained as a white solid. The absolute configuration was assigned arbitrarily. LCMS (ESI) m/z: 572.1 [M+H]+. 1H NMR (500 MHz, d6-DMSO) δ 1H NMR (500 MHz, CDCl3) δ 8.48 (s, 1H), 8.17 (d, J=6.0 Hz, 1H), 7.75 (d, J=7.3 Hz, 1H), 7.67 (t, J=7.3 Hz, 3H), 7.41 (t, J=7.4 Hz, 1H), 7.40-6.90 (br s, 1H), 6.82 (d, J=6.0 Hz, 1H), 6.73 (d, J=12.8 Hz, 1H), 5.49 (d, J=6.6 Hz, 1H), 4.02 (dd, J=6.6, 3.3 Hz, 1H), 2.36 (s, 1H), 2.30 (s, 6H), 2.01 (t, J=12.5 Hz, 1H), 1.93 (t, J=13.1 Hz, 1H), 1.84 (d, J=14.8 Hz, 1H), 1.75-1.58 (m, 3H) [1C—H signal under DMSO peak]
Following the procedure described in Example 1 Step a and making non-critical variations as required to replace 5-bromo-2,4-difluorobenzene-1-sulfonyl chloride with 3,4-difluorobenzene-1-sulfonyl chloride, N-(2,4-dimethoxybenzyl)-3,4-difluoro-N-(pyrimidin-4-yl)benzenesulfonamide was obtained as a pale yellow solid. LCMS (ESI) m/z: 422.1 [M+H]+.
Following the procedure described in Example 56 Step a and making non-critical variations as required to replace 5-bromo-N-(2,4-dimethoxybenzyl)-2,4-difluoro-N-(pyrimidin-4-yl)benzenesulfonamide with N-(2,4-dimethoxybenzyl)-3,4-difluoro-N-(pyrimidin-4-yl)benzenesulfonamide, N-(2,4-dimethoxybenzyl)-4-(((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)oxy)-3-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide was obtained. LCMS (ESI) m/z: 689.2 [M+H]+.
Following the procedure described in Example 1 Step s and making non-critical variations as required to replace N-(2,4-dimethoxybenzyl)-4-((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)-6-fluoro-3-oxo-N-(pyrimidin-4-yl)-3,4-dihydro-2H-benzo[b][1,4]oxazine-7-sulfonamide with N-(2,4-dimethoxybenzyl)-4-(((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)oxy)-3-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide, 4-(((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)oxy)-3-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide was obtained as a white solid. LCMS (ESI) m/z: 538.8 [M+H]+. 1H NMR (500 MHz, d6-DMSO) δ 11.82-10.89 (m, 1H), 8.40 (s, 1H), 8.05 (d, J=6.0 Hz, 1H), 7.66-7.46 (m, 6H), 7.34 (t, J=8.6 Hz, 1H), 6.71 (d, J=5.9 Hz, 1H), 4.70 (dd, J=10.2, 5.8 Hz, 1H), 3.23-3.16 (m, 1H), 2.83 (t, J=11.9 Hz, 1H), 2.20-2.10 (m, 1H), 1.99 (d, J=10.5 Hz, 1H), 1.83-1.56 (m, 3H), 1.56-1.39 (m, 1H).
Following the procedure described in Example 66 and making non-critical variations as required to replace 2-((tert-butyldimethylsilyl)oxy)acetaldehyde with benzyl 3-oxoazetidine-1-carboxylate, the title compound was obtained as light yellow oil. LCMS (ESI) m/z: 898.3 [M+H]+.
Following the procedure described in Example 42 and making non-critical variations as required to replace benzyl 3-(((1S,2S,5S)-2-((2-chloro-4-(N-(2,4-dimethoxybenzyl)-N-(pyrimidin-4-yl)sulfamoyl)-5-fluorophenyl)amino)-5-(3-(trifluoromethyl)phenyl)cyclohexyl)(methyl)-amino)azetidine-1-carboxylate with benzyl 3-(((1S,2S,5S)-2-(2-chloro-4-(N-(2,4-dimethoxybenzyl)-N-(pyrimidin-4-yl)sulfamoyl)-5-fluorophenoxy)-5-(3-(trifluoromethyl)-phenyl)cyclohexyl)(methyl)amino)azetidine-1-carboxylate, the title compound was obtained as a white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.28 (s, 1H), 8.22 (s, 1H), 7.95 (d, J=6.0 Hz, 1H), 7.77 (d, J=7.6 Hz, 1H), 7.62-7.52 (m, 4H), 7.24 (d, J=12.0 Hz, 1H), 6.55 (d, J=5.2 Hz, 1H), 4.75-4.64 (m, 1H), 4.09-3.98 (m, 1H), 3.86-3.76 (m, 4H), 2.94-2.81 (m, 2H), 2.24 (s, 3H), 2.20-2.11 (m, 1H), 1.83-1.66 (m, 4H), 1.51-1.37 (m, 1H). LCMS (ESI) m/z: 614.1 [M+H]+.
Following the procedure described in Example 45 and making non-critical variations as required to replace 4-(((1S,2S,4S)-2-(azetidin-3-yl(methyl)amino)-4-(3-(trifluoromethyl)phenyl)-cyclohexyl)amino)-5-chloro-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide with 4-(((1S,2S,4S)-2-(azetidin-3-yl(methyl)amino)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)oxy)-5-chloro-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide, the title compound was obtained as a white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.32 (s, 1H), 8.15 (s, 1H), 7.99 (d, J=6.0 Hz, 1H), 7.78 (d, J=7.6 Hz, 1H), 7.62-7.53 (m, 4H), 7.26 (d, J=12.0 Hz, 1H), 6.60 (d, J=6.0 Hz, 1H), 4.76-4.66 (m, 1H), 4.08-3.98 (m, 1H), 3.96-3.86 (m, 2H), 3.81-3.71 (m, 2H), 2.93-2.80 (m, 2H), 2.73 (s, 3H), 2.22 (s, 3H), 2.19-2.13 (m, 1H), 1.83-1.63 (m, 4H), 1.51-1.39 (m, 1H). LCMS (ESI) m/z: 628.2 [M+H]+.
Following the procedure described in Example 65 and making non-critical variations as required to replace 1,4-dichloro-2-iodobenzene with 1,3-dichloro-5-iodobenzene, the title compound was obtained as a white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.32 (s, 1H), 8.14 (s, 1H), 8.07 (d, J=6.4 Hz, 1H), 7.84 (d, J=7.2 Hz, 1H), 7.47 (s, 1H), 7.39-7.26 (m, 3H), 6.71 (d, J=6.0 Hz, 1H), 4.86-4.77 (m, 1H), 3.43-3.29 (m, 1H), 2.88-2.77 (m, 1H), 2.56 (s, 6H), 2.23-2.14 (m, 1H), 2.12-2.03 (m, 1H), 1.83-1.73 (m, 2H), 1.72-1.57 (m, 1H), 1.55-1.41 (m, 1H). LCMS (ESI) m/z: 572.8 [M+H]+.
Following the procedure described in Example 65 and making non-critical variations as required to replace 1,4-dichloro-2-iodobenzene with 1-bromo-3-iodobenzene, the title compound was obtained as light yellow oil. LCMS (ESI) m/z: 733.2 [M+H]+.
To a solution of 4-(((1S,2S,4S)-4-(3-bromophenyl)-2-(dimethylamino)cyclohexyl)oxy)-5-chloro-N-(2,4-dimethoxybenzyl)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide (90 mg, 0.12 mmol) in 1,4-dioxane was added sodium carbonate (52 mg, 0.49 mmol), 2-(3,6-dihydro-2H-pyran-4-yl)-4,4,5,5-tetramethyl-1,3,2-dioxaborolane (39 mg, 0.18 mmol) and [1,1′-bis(diphenylphosphino)ferrocene]dichloro-palladium(II), complex with dichloromethane (9 mg, 0.011 mmol). The mixture was heated to 80° C. for 16 h under a nitrogen atmosphere. After cooling to room temperature, the reaction was concentrated in vacuo. EtOAc (20 mL) was added and washed brine (10 mL), dried over anhydrous Na2SO4, filtered and concentrated in vacuo. The crude residue was purified by Prep-TLC (EtOAc/petroleum ether=1:1) to give the title compound (30 mg, 33%) as light yellow oil. LCMS (ESI) m/z: 737.3 [M+H]+.
To a solution of 5-chloro-4-(((1S,2S,4S)-4-(3-(3,6-dihydro-2H-pyran-4-yl)phenyl)-2-(dimethylamino)-cyclohexyl)oxy)-N-(2,4-dimethoxybenzyl)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide (30 mg, 0.04 mmol) in MeOH (2 mL) was added 10% Pd/C (43 mg, 0.04 mmol). The mixture was stirred at room temperature for 16 h under hydrogen atmosphere. The mixture was filtered and concentrated in vacuo to give the title compound (20 mg, crude) as yellow oil that required no further purification. LCMS (ESI) m/z: 739.2 [M+H]
A mixture of 5-chloro-N-(2,4-dimethoxybenzyl)-4-(((1S,2S,4S)-2-(dimethylamino)-4-(3-(tetrahydro-2H-pyran-4-yl)phenyl)cyclohexyl)oxy)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide (30 mg, 0.04 mmol) and formic acid (1 mL) was stirred at room temperature for 2 h. The mixture was concentrated in vacuo. The crude residue was purified by reverse phase chromatography (acetonitrile 19-39%/0.225% formic acid in water) to give the title compound (2.2 mg, 9%) as a white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.36 (s, 1H), 8.04 (d, J=6.0 Hz, 1H), 7.82 (d, J=7.6 Hz, 1H), 7.37 (d, J=11.6 Hz, 1H), 7.29-7.20 (m, 1H), 7.15 (s, 1H), 7.11-7.08 (m, 2H), 6.67-6.65 (m, 1H), 4.86-4.85 (m, 1H), 3.96-3.93 (m, 2H), 3.44-3.42 (m, 4H), 2.81-2.70 (m, 1H), 2.57 (s, 6H), 2.18-2.16 (m, 1H), 2.08-2.05 (m, 1H), 1.79-1.73 (m, 2H), 1.68-1.61 (m, 5H), 1.56-1.40 (m, 1H). LCMS (ESI) m/z: 589.3 [M+H]+.
Following the procedure described in Example 50 and making non-critical variations as required to replace 1-(2-fluoro-5-(trifluoromethyl)phenyl)ethanone with 1-(4-fluoro-3-(trifluoromethyl)phenyl)-ethanone, the title compound was obtained as a white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.34 (s, 1H), 8.00 (d, J=6.0 Hz, 1H), 7.73-7.65 (m, 2H), 7.52-7.43 (m, 1H), 7.39-7.36 (m, 1H), 6.74-6.69 (m, 1H), 6.64 (d, J=6.0 Hz, 1H), 6.12-6.04 (m, 1H), 3.72-3.61 (m, 1H), 3.12-2.76 (m, 6H), 2.12-2.02 (m, 2H), 1.83-1.63 (s, 7H), 1.49-1.37 (m, 1H). LCMS (ESI) m/z: 600.0 [M+H]+.
Following the procedure described in Example 50 and making non-critical variations as required to replace 1-(2-fluoro-5-(trifluoromethyl)phenyl)ethanone with 1-(3-fluoro-5-(trifluoromethyl)-phenyl)ethanone, the title compound was obtained as a white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.38 (s, 1H), 8.17 (s, 1H), 8.05 (d, J=5.6 Hz, 1H), 7.60-7.49 (m, 3H), 7.42-7.37 (m, 1H), 6.80-6.62 (m, 2H), 6.23 (d, J=8.0 Hz, 1H), 3.81-3.68 (m, 1H), 3.56-3.42 (m, 1H), 3.23-3.12 (m, 2H), 3.09-2.98 (m, 2H), 2.90-2.78 (m, 1H), 2.22-2.14 (m, 1H), 2.12-2.04 (m, 1H), 1.85-1.62 (m, 7H), 1.47-1.35 (m, 1H). LCMS (ESI) m/z: 600.0 [M+H]+.
Following the procedure described in Example 65 and making non-critical variations as required to replace 1,4-dichloro-2-iodobenzene with 1-chloro-2-iodo-4-(trifluoromethyl)benzene, the title compound was obtained as a white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.40 (s, 1H), 8.10 (s, 1H), 8.07 (d, J=8.0 Hz, 1H), 7.82 (d, J=8.0 Hz, 1H), 7.66-7.74 (m, 2H), 7.59-7.65 (m, 1H), 7.34 (d, J=12.0 Hz, 1H), 6.72 (d, J=8.0 Hz, 1H), 4.93-4.82 (m, 1H), 3.54-3.46 (m, 1H), 2.61-2.50 (m, 1H), 2.56 (s, 6H), 2.23-2.16 (m, 1H), 2.08-2.02 (m, 1H), 1.89-1.79 (m, 1H), 1.76-1.61 (m, 1H), 1.54-1.50 (m, 1H). LCMS (ESI) m/z: 606.9 [M+H]+.
Following the procedure described in Example 66 and making non-critical variations as required to replace 2-((tert-butyldimethylsilyl)oxy)acetaldehyde with benzyl 3-oxoazetidine-1-carboxylate, the title compound was obtained as light yellow oil. LCMS (ESI) m/z: 449.2 [M+H]+.
Following the procedure described in Example 63 and making non-critical variations as required to replace (1S,2S,5S)-2-((tert-butyldimethylsilyl)oxy)-5-(3-(trifluoromethyl)phenyl)-cyclohexanamine with benzyl 3-(((1S,2S,5S)-2-hydroxy-5-(3-(trifluoromethyl)phenyl)cyclohexyl)amino)azetidine-1-carboxylate, the title compound was obtained as colorless oil. LCMS (ESI) m/z: 571.3 [M+Na]+.
Following the procedure described in Example 48 and making non-critical variations as required to replace (1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)cyclohexanol and N-(2,4-dimethoxybenzyl)-2,4,5-trifluoro-N-(pyrimidin-4-yl)benzenesulfonamide with benzyl 3-((tert-butoxycarbonyl)((1S,2S,5S)-2-hydroxy-5-(3-(trifluoromethyl)phenyl)cyclohexyl)-amino)azetidine-1-carboxylate and 5-chloro-N-[(2,4-dimethoxyphenyl)methyl]-2,4-difluoro-N-pyrimidin-4-yl-benzenesulfonamide, the title compound was obtained as light yellow oil. LCMS (ESI) m/z: 984.3 [M+H]+.
Following the procedure described in Example 42 and making non-critical variations as required to replace benzyl 3-(((1S,2S,5S)-2-((2-chloro-4-(N-(2,4-dimethoxybenzyl)-N-(pyrimidin-4-yl)sulfamoyl)-5-fluorophenyl)amino)-5-(3-(trifluoromethyl)phenyl)cyclohexyl)-(methyl)amino)azetidine-1-carboxylate with benzyl 3-((tert-butoxycarbonyl)((1S,2S,5S)-2-(2-chloro-4-(N-(2,4-dimethoxybenzyl)-N-(pyrimidin-4-yl)sulfamoyl)-5-fluorophenoxy)-5-(3-(trifluoromethyl)phenyl)cyclohexyl)amino)azetidine-1-carboxylate, the title compound was obtained as a brown solid. LCMS (ESI) m/z: 872.3 [M+Na]+.
Following the procedure described in Example 45 and making non-critical variations as required to replace 4-(((1S,2S,4S)-2-(azetidin-3-yl(methyl)amino)-4-(3-(trifluoromethyl)phenyl)c-yclohexyl)amino)-5-chloro-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide with tert-butyl azetidin-3-yl((1S,2S,5S)-2-(2-chloro-4-(N-(2,4-dimethoxybenzyl)-N-(pyrimidin-4-yl)sulfamoyl)-5-fluorophenoxy)-5-(3-(trifluoromethyl)phenyl)cyclohexyl)carbamate, the title compound was obtained as light yellow oil. LCMS (ESI) m/z: 864.3 [M+H]+.
Following the procedure described in Example 42 and making non-critical variations as required to replace 4-(((1S,2S,4S)-2-(azetidin-3-yl(methyl)amino)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)amino)-5-chloro-N-(2,4-dimethoxybenzyl)-2-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide with tert-butyl ((1S,2S,5S)-2-(2-chloro-4-(N-(2,4-dimethoxybenzyl)-N-(pyrimidin-4-yl)sulfamoyl)-5-fluorophenoxy)-5-(3-(trifluoromethyl)phenyl)cyclohexyl)(1-methylazetidin-3-yl)carbamate, the title compound was obtained as a white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.31 (s, 1H), 7.97 (d, J=5.6 Hz, 1H), 7.78 (d, J=7.6 Hz, 1H), 7.62-7.51 (m, 4H), 7.25 (d, J=11.6 Hz, 1H), 6.59 (d, J=6.0 Hz, 1H), 4.41-4.29 (m, 1H), 4.20-4.11 (m, 1H), 4.10-4.02 (m, 1H), 3.91-3.81 (m, 1H), 3.69-3.55 (m, 2H), 2.88-2.79 (m, 2H), 2.73 (s, 3H), 2.16-2.07 (m, 1H), 2.04-1.94 (m, 1H), 1.82-1.63 (m, 2H), 1.58-1.32 (m, 2H). LCMS (ESI) m/z: 614.0 [M+H]+.
Following the procedure described in Example 1 Step 1 and making non-critical variations as required to replace 5-bromo-2,4-difluorobenzene-1-sulfonyl chloride with 3,4,5-trifluorobenzene-1-sulfonyl chloride, N-(2,4-dimethoxybenzyl)-3,4,5-trifluoro-N-(pyrimidin-4-yl)benzenesulfonamide was obtained as a pale yellow solid. LCMS (ESI) m/z: 440.1 [M+H]+.
To a solution of (1S,2S,5S)—N1,N1-dimethyl-5-(3-(trifluoromethyl)phenyl)cyclohexane-1,2-diamine hydrochloride from Example 1 (35 mg, 0.1 mmol) in DMSO (0.5 mL) was added N-(2,4-dimethoxy-benzyl)-3,4,5-trifluoro-N-(pyrimidin-4-yl)benzenesulfonamide (67 mg, 0.15 mmol) and cesium carbonate (142 mg, 0.43 mmol). The reaction was stirred at room temperature for 18 hours then purified directly by C18 reverse phase flash column chromatography (55-85% MeCN/10 mM aqueous ammonium bicarbonate, pH=10). Appropriate fractions were combined and lyophilized to provide N-(2,4-dimethoxybenzyl)-4-(((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)amino)-3,5-difluoro-N-(pyrimidin-4-yl)benzenesulfonamide (30 mg, 39% yield). LCMS (ESI) m/z: 706.1 [M+H]+.
Following the procedure described in Example 1 Step s and making non-critical variations as required to replace N-(2,4-dimethoxybenzyl)-4-((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)-cyclohexyl)-6-fluoro-3-oxo-N-(pyrimidin-4-yl)-3,4-dihydro-2H-benzo[b][1,4]oxazine-7-sulfonamide with N-(2,4-dimethoxybenzyl)-4-(((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)-cyclohexyl)amino)-3,5-difluoro-N-(pyrimidin-4-yl)benzenesulfonamide, 4-(((1S,2S,4S)-2-(dimethyl-amino)-4-(3-(trifluoromethyl)phenyl)-cyclohexyl)amino)-3,5-difluoro-N-(pyrimidin-4-yl)benzene-sulfonamide was obtained as a white solid. LCMS (ESI) m/z: 555.9 [M+H]+. 1H NMR (500 MHz, d6-DMSO) δ 8.33 (s, 1H), 7.96 (d, J=5.9 Hz, 1H), 7.71 (s, 1H), 7.64 (d, J=6.9 Hz, 1H), 7.60-7.50 (m, 2H), 7.40-7.30 (m, 2H), 6.56 (d, J=5.6 Hz, 1H), 5.26 (d, J=6.7 Hz, 1H), 3.75-3.64 (m, 1H), 3.25-3.11 (m, 1H), 2.79 (t, J=12.1 Hz, 1H), 2.06 (t, J=10.3 Hz, 2H), 1.75 (d, J=10.8 Hz, 2H), 1.62 (qd, J=12.7, 2.6 Hz, 1H), 1.53-1.38 (m, 1H).
Following the procedure described in Example 88 and making non-critical variations as required to replace 3,4,5-trifluorobenzene-1-sulfonyl chloride with 3,4-difluorobenzene-1-sulfonyl chloride, 4-(((1S,2S,4S)-2-(dimethylamino)-4-(3-(trifluoromethyl)phenyl)cyclohexyl)amino)-3-fluoro-N-(pyrimidin-4-yl)benzenesulfonamide formate was obtained as a white solid. LCMS (ESI) m/z: 537.8 [M+H]+. 1H NMR (400 MHz, d6-DMSO) δ 8.44 (s, 1H), 8.08 (d, J=6.0 Hz, 1H), 7.67 (s, 1H), 7.65-7.60 (m, 1H), 7.59-7.53 (m, 2H), 7.48 (dd, J=8.5, 1.7 Hz, 1H), 7.42 (dd, J=11.7, 1.9 Hz, 1H), 6.89 (t, J=8.6 Hz, 1H), 6.75 (dd, J=6.0, 0.8 Hz, 1H), 5.76 (d, J=4.7 Hz, 1H), 3.57 (d, J=8.3 Hz, 1H), 3.04 (t, J=10.8 Hz, 1H), 2.88-2.75 (m, 1H), 2.35 (s, 6H), 2.19 (dd, J=13.0, 3.3 Hz, 1H), 2.04 (d, J=11.6 Hz, 1H), 1.83-1.59 (m, 3H), 1.36 (qd, J=12.3, 3.8 Hz, 1H).
Following the procedure described in Example 60 and making non-critical variations as required to replace 1,4-dibromobutane with tert-butyl((1,4-dibromobutan-2-yl)oxy)dimethylsilane, the title compound was obtained as mixture of diastereomers and a white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.32 (s, 1H), 8.15 (s, 1H), 8.00 (d, J=6.0 Hz, 1H), 7.77 (d, J=7.2 Hz, 1H), 7.64-7.53 (m, 4H), 7.29 (d, J=11.6 Hz, 1H), 6.60 (d, J=6.0 Hz, 1H), 4.80-4.66 (m, 1H), 4.12-3.98 (m, 1H), 3.27-3.19 (m, 2H), 3.08-2.81 (m, 4H), 2.78-2.68 (m, 1H), 2.20-2.12 (m, 1H), 2.11-2.04 (m, 1H), 1.84-1.63 (m, 4H), 1.58-1.41 (m, 2H). LCMS (ESI) m/z: 615.2 [M+H]+.
Following the procedure described in Example 65 and making non-critical variations as required to replace 1,4-dichloro-2-iodobenzene with 1-(1,1-difluoroethyl)-3-iodobenzene, the title compound was obtained as a white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.38 (s, 1H), 8.05 (d, J=6.0 Hz, 1H), 7.83 (d, J=7.2 Hz, 1H), 7.45 (s, 1H), 7.32-7.45 (m, 4H), 6.68 (d, J=6.0 Hz, 1H), 4.83-4.94 (m, 1H), 3.35-3.36 (m, 1H), 2.88-2.81 (m, 1H), 2.55 (s, 6H), 2.24-2.15 (m, 1H), 2.12-2.05 (m, 1H), 1.97 (t, J=18.8 Hz, 3H), 1.80-1.64 (m, 3H), 1.56-1.44 (m, 1H). LCMS (ESI) m/z: 569.0 [M+H]+.
Following the procedure described in Example 65 and making non-critical variations as required to replace 1,4-dichloro-2-iodobenzene with 2-chloro-1-iodo-3-(trifluoromethyl)benzene, the title compound was obtained as a white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.42 (s, 1H), 8.10 (d, J=6.8 Hz, 1H), 7.85 (d, J=7.6 Hz, 1H), 7.79-7.72 (m, 2H), 7.64-7.57 (m, 1H), 7.40 (d, J=11.6 Hz, 1H), 6.74 (d, J=6.4 Hz, 1H), 4.92-4.83 (m, 1H), 3.49-3.41 (m, 2H), 2.54 (s, 6H), 2.27-2.17 (m, 1H), 2.11-2.03 (m, 1H), 1.86-1.52 (m, 4H). LCMS (ESI) m/z: 606.9 [M+H]+.
Although the preparation of the free-base or a specific salt form may be illustrated in the Examples above, it is understood that the free-base and its acid or base salt forms can be interconverted using standard techniques
Preparation of membranes containing recombinantly expressed sodium channels: Frozen recombinant cell pellets are thawed on ice and diluted to 4 times the cell pellet weight with ice cold 50 mM Tris HCl, pH 7.4 buffer. The cell suspensions are homogenized on ice using a motorized glass dounce homogeniser. Homogenates are further diluted 8.4 times with ice cold 50 mM Tris HCl, pH 7.4 buffer and then centrifuged at 200×g at 4° C. for 15 minutes. The supernatants are collected and centrifuged at 10000×g at 4° C. for 50 min. The pellets are then re-suspended in 100 mM NaCl, 20 mM Tris HCl, pH 7.4 buffer containing 1% v/v protease inhibitors (Calbiochem) and re-homogenized on ice. The homogenized membranes are then processed through a syringe equipped with a 26 gauge needle. Protein concentrations are determined by Bradford Assay and the membranes are stored at −80° C.
Radioligand Binding Studies: Saturation experiments. A competitive NaV1.7 inhibitor having a methyl group is tritiated. Three tritiums are incorporated in place of methyl hydrogens to generate [3H]compound. Binding of this radioligand is performed in 5 mL borosilicate glass test tubes at room temperature. Binding is initiated by adding membranes to increasing concentrations of [3H]compound in 100 mM NaCl, 20 mM Tris HCl, pH 7.4 buffer containing 0.01% w/v bovine serum albumin (BSA) for 18h. Non-specific binding is determined in the presence of 1 μM unlabeled compound. After 18h, the reactants are filtered through GF/C glass fiber filters presoaked in 0.5% w/v polyethylene imine. Filters are washed with 15 mL ice cold 100 mM NaCl, 20 mM Tris HCl, pH7.4 buffer containing 0.25% BSA to separate bound from free ligand. [3H]compound bound to filters is quantified by liquid scintillation counting.
Competitive binding experiments: Binding reactions are performed in 96-well polypropylene plates at room temperature for 18h. In 360 μL, membranes are incubated with 100 pM [3H]compound and increasing concentrations of Test Compound. Non-specific binding is defined in the presence of 1 μM unlabeled compound. Reactions are transferred and filtered through 96-well glass fiber/C filter plates presoaked with 0.5% polyethylene imine. The filtered reactions are washed 5 times with 200 μL ice cold buffer containing 0.25% BSA. Bound radioactivity is determined by liquid scintillation counting.
Data Analysis: For saturation experiments, non-specific binding is subtracted from total binding to provide specific binding and these values are recalculated in terms of pmol ligand bound per mg protein. Saturation curves are constructed and dissociation constants are calculated using the single site ligand binding model: Beq=(Bmax*X)/(X+Kd), where Beq is the amount of ligand bound at equilibrium, Bmax is the maximum receptor density, Kd is the dissociation constant for the ligand, and X is the free ligand concentration. For competition studies percent inhibition is determined and IC50 values are calculated using a 4 parameter logistic model (% inhibition=(A+((B−A)/(1+((x/C){circumflex over ( )}D)))) using XLfit, where A and B are the maximal and minimum inhibition respectively, C is the IC50 concentration and D is the (Hill) slope.
Preparation of membranes containing recombinantly expressed sodium channels: Following the procedure described in Example 93A, and making modifications as required to: centrifuge supernatants at 100000×g instead of 10000×g; re-suspend pellets in a buffer containing 0.01% BSA in addition to 100 mM NaCl, 20 mM Tris 1-ICI, pH 7.4 buffer, and 1% v/v proteasome inhibitors; and storing membranes at −80° C. in single use aliquots instead of pooled.
Radioligand Binding Studies: Saturation experiments: Following the procedure described in Example 93A, and making modifications as required to incubate [3H]compound for 3 hours instead of 18 hours
Competitive binding experiments: Following the procedure described in Example 93A and making modifications as required to: perform binding experiments at room temperature for 3 hours instead of 18 hours; use 240 uL of solution and 300 pM of [3H]compound instead of 360 uL and 100 pM of [3H]compound; and wash filtered reactions 2 times instead of 5 times
Data Analysis: Following the procedure described in Example 243A.
Patch voltage clamp electrophysiology allows for the direct measurement and quantification of block of voltage-gated sodium channels (NaV's), and allows the determination of the time- and voltage-dependence of block which has been interpreted as differential binding to the resting, open, and inactivated states of the sodium channel (Hille, B., Journal of General Physiology (1977), 69: 497-515).
The following voltage clamp electrophysiology studies are performed on representative compounds using cells heterologously expressing Nav1.7 or Nav1.5 channels. cDNAs for Nav1.7 (NM 002977) and Nav1.5 (AC137587) are stably expressed in Chinese Hamstr Ovary (CHO) cells and CHL (Chinese Hamster Lung) cells respectively. Sodium currents are measured in the whole-cell configuration using Syncropatch 384PE (Hanlon Technologies, Germany). 1NPC®-384 chips with custom medium resistance and single hole mode are used. Internal solution consists of (in mM): 110 CsCl, 10 CsCl, 20 EGTA, and 10 Hepes (pH adjusted to 7.2); and external solution contains (in mM): 60 NMDG, 80 NaCl, 4 KCl, 1 MgCl2, 2 CaCl2), 2 D-Glucose monohydrate, 10 Hepes (pH adjusted to 7.4 with NaOH).
After system flushing, testing compounds are dissolved in external solution containing 0.1% Pluronic F-127. The chip is moved into the measuring head and the instrument primes the chip with external and internal solutions. 10 μl cells are added to the chip from a cell hotel, and a negative pressure of −50 mBar is applied to form a seal. Following treatment with seal enhancer solution and wash-off with external solution, negative pressure of −250 mbar is applied for 1 second to achieve the whole-cell configuration, followed by three washing steps in external solution. 20 μl of compounds is added to 40 μl in each well (1:3 dilution of compounds), and after mixing, 20 μl is removed so the volume is retained at 40 ul. After approximately 13 minutes recordings, 20 μl/well of 2 uM TTX, or 333 uM Tetracaine (for Nav1.5) is added to achieve full block.
For voltage protocol, an holding potential of −50 mV is applied during the whole experiment. A depolarizing step is applied to −10 mV for 10 ms, followed by a hyperpolarization step to −150 mV for 20 ms to allow channel recovery from inactivation. A second depolarizing step is applied from −150 mV to −10 mV for 10 ms, where currents are measured to derive blocking effects of compounds. Inhibition is determined based on 7.5 min of compound incubation.
Data for representative compounds is provided in Table 1.
In this test, the analgesia effect produced by administering a compound of the invention can be observed through heat-induced tail-flick in mice. The test includes a heat source consisting of a projector lamp with a light beam focused and directed to a point on the tail of a mouse being tested. The tail-flick latencies, which are assessed prior to drug treatment, and in response to a noxious heat stimulus, i.e., the response time from applying radiant heat on the dorsal surface of the tail to the occurrence of tail flick, are measured and recorded at 40, 80, 120, and 160 minutes.
For the first part of this study, 65 animals undergo assessment of baseline tail flick latency once a day over two consecutive days. These animals are then randomly assigned to one of the 11 different treatment groups including a vehicle control, a morphine control, and 9 compounds at 30 mg/Kg are administered intramuscularly. Following dose administration, the animals are closely monitored for signs of toxicity including tremor or seizure, hyperactivity, shallow, rapid or depressed breathing and failure to groom. The optimal incubation time for each compound is determined via regression analysis. The analgesic activity of the test compounds is expressed as a percentage of the maximum possible effect (% MPE) and is calculated using the following formula:
where:
Postdrug latency=the latency time for each individual animal taken before the tail is removed (flicked) from the heat source after receiving drug.
Predrug latency=the latency time for each individual animal taken before the tail is flicked from the heat source prior to receiving drug.
Cut-off time (10 s)=is the maximum exposure to the heat source.
Acute Pain (Formalin Test)
The formalin test is used as an animal model of acute pain. In the formalin test, animals are briefly habituated to the plexiglass test chamber on the day prior to experimental day for 20 minutes. On the test day, animals are randomly injected with the test articles. At 30 minutes after drug administration, 50 μL of 10% formalin is injected subcutaneously into the plantar surface of the left hind paw of the rats. Video data acquisition begins immediately after formalin administration, for duration of 90 minutes.
The images are captured using the Actimetrix Limelight software which stores files under the *.llii extension, and then converts it into the MPEG-4 coding. The videos are then analyzed using behaviour analysis software “The Observer 5.1”, (Version 5.0, Noldus Information Technology, Wageningen, The Netherlands). The video analysis is conducted by watching the animal behaviour and scoring each according to type, and defining the length of the behaviour (Dubuisson and Dennis, 1977). Scored behaviours include: (1) normal behaviour, (2) putting no weight on the paw, (3) raising the paw, (4) licking/biting or scratching the paw. Elevation, favoring, or excessive licking, biting and scratching of the injected paw indicate a pain response. Analgesic response or protection from compounds is indicated if both paws are resting on the floor with no obvious favoring, excessive licking, biting or scratching of the injected paw.
Analysis of the formalin test data is done according to two factors: (1) Percent Maximal Potential Inhibitory Effect (% MPIE) and (2) pain score. The % MPIEs is calculated by a series of steps, where the first is to sum the length of non-normal behaviours (behaviours 1,2,3) of each animal. A single value for the vehicle group is obtained by averaging all scores within the vehicle treatment group. The following calculation yields the MPIE value for each animal:
MPIE (%)=100−[(treatment sum/average vehicle value)×100%]
The pain score is calculated from a weighted scale as described above. The duration of the behaviour is multiplied by the weight (rating of the severity of the response), and divided by the total length of observation to determine a pain rating for each animal. The calculation is represented by the following formula:
Pain rating=[0(To)+1(T1)+2(T2)+3(T3)]/(To+T1+T2+T3)
CFA Induced Chronic Inflammatory Pain
In this test, tactile allodynia is assessed with calibrated von Frey filaments. Following a full week of acclimatization to the vivarium facility, 150 μL of the “Complete Freund's Adjuvant” (CFA) emulsion (CFA suspended in an oil/saline (1:1) emulsion at a concentration of 0.5 mg/mL) is injected subcutaneously into the plantar surface of the left hind paw of rats under light isoflurane anaesthesia. Animals are allowed to recover from the anaesthesia and the baseline thermal and mechanical nociceptive thresholds of all animals are assessed one week after the administration of CFA. All animals are habituated to the experimental equipment for 20 minutes on the day prior to the start of the experiment. The test and control articles are administrated to the animals, and the nociceptive thresholds measured at defined time points after drug administration to determine the analgesic responses to each of the six available treatments. The time points used are previously determined to show the highest analgesic effect for each test compound.
Thermal nociceptive thresholds of the animals are assessed using the Hargreaves test. Animals are placed in a Plexiglas enclosure set on top of an elevated glass platform with heating units. The glass platform is thermostatically controlled at a temperature of approximately 30° C. for all test trials. Animals are allowed to accommodate for 20 minutes following placement into the enclosure until all exploration behaviour ceases. The Model 226 Plantar/Tail Stimulator Analgesia Meter (IITC, Woodland Hills, Calif.) is used to apply a radiant heat beam from underneath the glass platform to the plantar surface of the hind paws. During all test trials, the idle intensity and active intensity of the heat source are set at 1 and 45 respectively, and a cut off time of 20 seconds is employed to prevent tissue damage.
The response thresholds of animals to tactile stimuli are measured using the Model 2290 Electrovonfrey anesthesiometer (IITC Life Science, Woodland Hills, Calif.) following the Hargreaves test. Animals are placed in an elevated Plexiglas enclosure set on a mire mesh surface. After 10 minutes of accommodation, pre-calibrated Von Frey hairs are applied perpendicularly to the plantar surface of both paws of the animals in an ascending order starting from the 0.1 g hair, with sufficient force to cause slight buckling of the hair against the paw. Testing continues until the hair with the lowest force to induce a rapid flicking of the paw is determined or when the cut off force of approximately 20 g is reached. This cut off force is used because it represent approximately 10% of the animals' body weight and it serves to prevent raising of the entire limb due to the use of stiffer hairs, which would change the nature of the stimulus.
In this model, the hypealgesia caused by an intra-planar incision in the paw is measured by applying increased tactile stimuli to the paw until the animal withdraws its paw from the applied stimuli. While animals are anaesthetized under 3.5% isofluorane, which is delivered via a nose cone, a 1 cm longitudinal incision is made using a number 10 scalpel blade in the plantar aspect of the left hind paw through the skin and fascia, starting 0.5 cm from the proximal edge of the heel and extending towards the toes. Following the incision, the skin is apposed using 2, 3-0 sterilized silk sutures. The injured site is covered with Polysporin and Betadine. Animals are returned to their home cage for overnight recovery.
The withdrawal thresholds of animals to tactile stimuli for both operated (ipsilateral) and unoperated (contralateral) paws can be measured using the Model 2290 Electrovonfrey anesthesiometer (IITC Life Science, Woodland Hills, Calif.). Animals are placed in an elevated Plexiglas enclosure set on a mire mesh surface. After at least 10 minutes of acclimatization, pre-calibrated Von Frey hairs are applied perpendicularly to the plantar surface of both paws of the animals in an ascending order starting from the 10 g hair, with sufficient force to cause slight buckling of the hair against the paw. Testing continues until the hair with the lowest force to induce a rapid flicking of the paw is determined or when the cut off force of approximately 20 g is reached. This cut off force is used because it represent approximately 10% of the animals' body weight and it serves to prevent raising of the entire limb due to the use of stiffer hairs, which would change the nature of the stimulus.
Briefly, an approximately 3 cm incision is made through the skin and the fascia at the mid thigh level of the animals' left hind leg using a no. 10 scalpel blade. The left sciatic nerve is exposed via blunt dissection through the biceps femoris with care to minimize haemorrhagia. Four loose ligatures are tied along the sciatic nerve using 4-0 non-degradable sterilized silk sutures at intervals of 1 to 2 mm apart. The tension of the loose ligatures is tight enough to induce slight constriction of the sciatic nerve when viewed under a dissection microscope at a magnification of 4 fold. In the sham-operated animal, the left sciatic nerve is exposed without further manipulation. Antibacterial ointment is applied directly into the wound, and the muscle is closed using sterilized sutures. Betadine is applied onto the muscle and its surroundings, followed by skin closure with surgical clips.
The response thresholds of animals to tactile stimuli are measured using the Model 2290 Electrovonfrey anesthesiometer (IITC Life Science, Woodland Hills, Calif.). Animals are placed in an elevated Plexiglas enclosure set on a mire mesh surface. After 10 minutes of accommodation, pre-calibrated Von Frey hairs are applied perpendicularly to the plantar surface of both paws of the animals in an ascending order starting from the 0.1 g hair, with sufficient force to cause slight buckling of the hair against the paw. Testing continues until the hair with the lowest force to induce a rapid flicking of the paw is determined or when the cut off force of approximately 20 g is reached. This cut off force is used because it represents approximately 10% of the animals' body weight and it serves to prevent raising of the entire limb due to the use of stiffer hairs, which would change the nature of the stimulus.
Thermal nociceptive thresholds of the animals are assessed using the Hargreaves test. Following the measurement of tactile thresholds, animals are placed in a Plexiglass enclosure set on top of an elevated glass platform with heating units. The glass platform is thermostatically controlled at a temperature of approximately 24 to 26° C. for all test trials. Animals are allowed to accommodate for 10 minutes following placement into the enclosure until all exploration behaviour ceases. The Model 226 Plantar/Tail Stimulator Analgesia Meter (IITC, Woodland Hills, Calif.) is used to apply a radiant heat beam from underneath the glass platform to the plantar surface of the hind paws. During all test trials, the idle intensity and active intensity of the heat source are set at 1 and 55 respectively, and a cut off time of 20 seconds is used to prevent tissue damage.
The spinal nerve ligation (SNL) neuropathic pain model is used as an animal (i.e. rat) model of neuropathic pain. In the SNL test, the lumbar roots of spinal nerves L5 and L6 are tightly ligated to cause nerve injury, which results in the development of mechanical hyperalgesia, mechanical allodynia and thermal hypersensitivity. The surgery is performed two weeks before the test day in order for the pain state to fully develop in the animals. Several spinal nerve ligation variations are used to characterize the analgesic properties of a compound of the invention.
Ligation of the L5 spinal nerve;
Ligation of the L5 and L6 spinal nerves;
Ligation and transection of the L5 spinal nerve;
Ligation and transection of the L5 and L6 spinal nerves; or
Mild irritation of the L4 spinal nerve in combination with any one of the above (1)-(4).
While the animals are anaesthetized under 3.5% isofluorane delivered via a nose cone, an approximately 2.5 cm longitudinal incision is made using a number 10 scalpel blade in the skin just lateral to the dorsal midline, using the level of the posterior iliac crests as the midpoint of the incision. Following the incision, the isoflourane is readjusted to maintenance levels (1.5%-2.5%). At mid-sacral region, an incision is made with the scalpel blade, sliding the blade along the side of the vertebral column (in the saggital plane) until the blade hits the sacrum. Scissors tips are introduced through the incision and the muscle and ligaments are removed from the spine to expose 2-3 cm of the vertebral column. The muscle and fascia are cleared from the spinal vertebra in order to locate the point where the nerve exits from the vertebra. A small glass hook is placed medial to the spinal nerves and the spinal nerves are gently elevated from the surrounding tissues. Once the spinal nerves have been isolated, a small length of non-degradable 6-0 sterilized silk thread is wound twice around the ball at the tip of the glass hook and passed back under the nerve. The spinal nerves are then firmly ligated by tying a knot, ensuring that the nerve bulges on both sides of the ligature. The procedure may be repeated as needed. In some animals, the L4 spinal nerve may be lightly rubbed (up to 20 times) with the small glass hook to maximize the development of neuropathic pain. Antibacterial ointment is applied directly into the incision, and the muscle is closed using sterilized sutures. Betadine is applied onto the muscle and its surroundings, followed by skin closure with surgical staples or sterile non-absorable monofilament 5-0 nylon sutures.
The analgesic effect produced by topical administration of a compound of the invention to the animals can then be observed by measuring the paw withdrawal threshold of animals to mechanical tactile stimuli. These may be measured using either the mechanical allodynia procedure or the mechanical hyperalgesia procedure as described below. After establishment of the appropriate baseline measurements by either method, topical formulation of a compound of the invention is applied on the ipsilateral ankle and foot. The animals are then placed in plastic tunnels for 15 minutes to prevent them from licking the treated area and removing the compound. Animals are placed in the acrylic enclosure for 15 minutes before testing the ipsilateral paw by either of the methods described below, and the responses are recorded at 0.5, 1.0 and 2.0 hour post treatment.
The pain threshold of animals to mechanical alloydnia for both operated and control animals can be measured approximately 14 days post-surgery using manual calibrated von Frey filaments as follows. Animals are placed in an elevated plexiglass enclosure set on a mire mesh surface. Animals are allowed to acclimate for 20-30 minutes. Pre-calibrated Von Frey hairs are applied perpendicularly to the plantar surface of the ipsilateral paw of the animals starting from the 2.0 g hair, with sufficient force to cause slight buckling of the hair against the paw to establish the baseline measurements. Stimuli are presented in a consecutive manner, either in an ascending or descending order until the first change in response is noted, after which four additional responses are recorded for a total of six responses. The six responses measured in grams are entered into a formula as described by Chaplan, S. R. et al., J. Neurosci. Methods, 1994 July; 53(1):55-63, and a 50% withdrawal threshold is calculated. This constitutes the mechanical allodynia value.
The response thresholds of animals to tactile stimuli are measured using the Model 2290 Electrovonfrey anesthesiometer (IITC Life Science, Woodland Hills, Calif.). Animals are placed in an elevated Plexiglas enclosure set on a wire mesh surface. After 15 minutes of accommodation in this enclosure, a von Frey hair is applied perpendicularly to the plantar surface of the ipsilateral hind paws of the animals, with sufficient force, measured in grams, to elicit a crisp response of the paw. A response indicates a withdrawal from the painful stimulus and constitutes the efficacy endpoint. The data are expressed as percent change from baseline threshold measured in grams.
The compounds of the invention can be evaluated for their activity as antipruritic agents by in vivo test using rodent models. One established model for peripherally elicited pruritus is through the injection of serotonin into the rostral back area (neck) in hairless rats. Prior to serotonin injections (e.g., 2 mg/mL, 50 μL), a dose of a compound of the present invention can be applied systemically through oral, intravenous or intraperitoneal routes or topically to a circular area fixed diameter (e.g. 18 mm). Following dosing, the serotonin injections are given in the area of the topical dosing. After serotonin injection the animal behaviour is monitored by video recording for 20 min-1.5 h, and the number of scratches in this time compared to vehicle treated animals. Thus, application of a compound of the current invention could suppress serotonin-induced scratching in rats.
All of the U.S. patents, U.S. patent application publications, U.S. patent applications, foreign patents, foreign patent applications and non patent publications referred to in this specification are incorporated herein by reference in their entireties.
Although the foregoing invention has been described in some detail to facilitate understanding, it will be apparent that certain changes and modifications may be practiced within the scope of the appended claims. Accordingly, the described embodiments are to be considered as illustrative and not restrictive, and the invention is not to be limited to the details given herein, but may be modified within the scope and equivalents of the appended claims.
| Number | Date | Country | Kind |
|---|---|---|---|
| PCT/CN2018/077189 | Feb 2018 | CN | national |
This application is a continuation of U.S. application Ser. No. 16/283,451, filed Feb. 22, 2019, which claims priority to International Application Number PCT/CN2018/077189 filed Feb. 26, 2018. The entire content of the applications referenced above is hereby incorporated by reference herein.
| Number | Date | Country | |
|---|---|---|---|
| Parent | 16283451 | Feb 2019 | US |
| Child | 17331164 | US |
