Patent Application
20170164570
The foregoing applications, and all documents cited therein or during their prosecution (“appln cited documents”) and all documents cited or referenced in the appln cited documents, and all documents cited or referenced herein (“herein cited documents”), and all documents cited or referenced in herein cited documents, together with any manufacturer's instructions, descriptions, product specifications, and product sheets for any products mentioned herein or in any document incorporated by reference herein, are hereby incorporated herein by reference, and may be employed in the practice of the invention. More specifically, all referenced documents are incorporated by reference to the same extent as if each individual document was specifically and individually indicated to be incorporated by reference.
The instant application contains a Sequence Listing which has been submitted electronically in ASCII format and is hereby incorporated by reference in its entirety. Said ASCII copy, created on Jan. 23, 2017, is named 43104_00_2294_SL.txt and is 104,939 bytes in size.
The present invention relates to a Solanum lycopersicum plant that has an aberrant glandular hair phenotype. The invention also relates to the seeds and progeny of such plants and to propagation material for obtaining such plants. Furthermore, the invention relates to the use of the plants, seeds and propagation material for conferring the aberrant glandular hair phenotype to tomato plants. The invention also relates to sequences and the use of sequences for identifying the aberrant glandular hair phenotype.
Plants of the species Solanum lycopersicum (tomato) belong to the nightshade family, also known as Solanaceae. Within this family it is nowadays grouped in the genus Solanum, which does not only harbor tomato, but also the important food crops potato and eggplant. It is a perennial, herbaceous, flowering plant species which is native to South America.
Other species that are related to tomato within the Solanum genus are for example Solanum pimpinellifolium, Solanum chilense, Solanum peruvianum and Solanum habrochaites. Although it is known that crossing can be considerably difficult, these species are used to obtain traits that are valuable in growing tomato plants. In the recent history, advancement in tomato breeding has led to tomato varieties having, for example higher yield, higher disease resistance and increased shelf life.
Commercial vegetable production, including the production of tomato, is affected by many conditions. The choice of the grower for a certain variety is a determining factor, and forms the genetic basis for the result that can be achieved. In addition, there are many external factors that influence the outcome. Growing conditions like climate, soil, and the use of inputs like fertilizer play a major role. There are various ways of cultivating tomatoes and other crops, among which, the most common are: open field, greenhouse and shade house production. Although the species can be grown under a wide range of climatic conditions, it performs most successfully under dry and warm conditions. In addition to this, the presence of pests and diseases also affects the total yield that can be reached.
Pest and disease management in the production of tomato and other crops can, depending on the way the plants are grown, be done in several ways. On the one hand, breeding focuses on the addition of resistances to pests and diseases to the trait portfolio of plants. Wild relatives of certain species often form a useful source of such resistant germplasm. Alternatively, the growing conditions can be modified in such a way that temperature, humidity levels or light intensity are selected to create less favourable settings for the development of diseases and pests. Often the temperatures that are favourable for the successful production of plants and/or fruits, are also favourable for important pest such as whiteflies. Thirdly, herbicides or pesticides can be used to eradicate weeds and pests, respectively. However, the use of such chemical compounds is under discussion as it might leave residues on plants and fruits that could be compromising to the health of consumers when said plants and/or fruits are consumed.
When vegetables are grown in greenhouses, a fourth pest management alternative is available to growers, which is known as biological pest control. By releasing living organisms that exert their predacious, parasitical and/or herbivorous capacity together with an active human management role, natural enemies can be used to control certain pests. There are various insects known in the art that are commercially reared for use in greenhouses. One of the important insect families in this respect is formed by the Phytoseiidae that is widely used in the biological control of whiteflies, spider mites and thrips.
In addition, WO06/057552 describes a method for biological pest control by making use of the phytoseiid predatory mite Amblyseius swirskii. However, these mites are not able to establish themselves on tomato plants, meaning that they are not able to live and reproduce. This makes them unsuitable for use as an efficient biological pest control. Tomato growers can be blocked by the absence of such biological pest controls, because good resistances aimed at insects especially for whitefly, are not yet present in tomato varieties. If a greenhouse is infested by whiteflies, a complete batch of plants might become useless for high yield and high quality vegetable production as the plants might be severely affected. The same applies to the phytoseiid predatory mite Amblydromalus limonicus, that is also not capable to establish on tomato plants.
For the predatory mite Phytoseiulus persimilis, it is known that it can be used to combat Tetranychus urticae (red spider mite) on tomato plants, but this predator exclusively feeds on Tetranychus species and thus cannot be deployed to combat infestations of other species. For another predatory mite, Neoseiulus californicus, a very low performance on tomato plants has been shown in the control of a Tetranychus species infestation.
Citation or identification of any document in this application is not an admission that such document is available as prior art to the present invention.
Thus, there exists a need for tomato plants that allow for application of biological pest control by the proper establishment of mites, in particular the predatory mites Amblyseius swirskii and/or Amblydromalus limonicus. Upon successful establishment, the mites can perform their desired role: function as a biological pest control in fighting infestation by whitefly as well as thrips.
In the research that led to the present invention, novel tomato plants were developed, which may comprise a modified Slmyc2 gene that is capable of conferring an aberrant glandular hair phenotype, allowing for the establishment of mites, in particular the predatory mites Amblyseius swirskii and/or Amblydromalus limonicus. More in detail, it was determined that the predatory mites are hampered by the presence and/or appearance of a specific type of trichomes or glandular hairs that are present on the stems and leaves of tomato plants and/or by volatiles that are produced in the glandular hair cells.
The present invention relates to a modified Slmyc2 gene, which may comprise at least one modification as compared to the wild type sequence of SEQ ID No. 5, which modification leads to the reduction or absence of SlMYC2 protein activity, wherein the modified Slmyc2 gene is capable of conferring an aberrant glandular hair phenotype to a Solanum lycopersicum plant. The modification may be suitably selected from a modification that decreases the mRNA level of the Slmyc2 gene, a modification that decreases the level of the SlMYC2 protein and/or a modification that decreases the activity of the SlMYC2 protein, as compared to the wild type Slmyc2 gene of SEQ ID No. 5.
Accordingly, it is an object of the invention not to encompass within the invention any previously known product, process of making the product, or method of using the product such that Applicants reserve the right and hereby disclose a disclaimer of any previously known product, process, or method. It is further noted that the invention does not intend to encompass within the scope of the invention any product, process, or making of the product or method of using the product, which does not meet the written description and enablement requirements of the USPTO (35 U.S.C. §112, first paragraph) or the EPO (Article 83 of the EPC), such that Applicants reserve the right and hereby disclose a disclaimer of any previously described product, process of making the product, or method of using the product. It may be advantageous in the practice of the invention to be in compliance with Art. 53(c) EPC and Rule 28(b) and (c) EPC. All rights to explicitly disclaim any embodiments that are the subject of any granted patent(s) of applicant in the lineage of this application or in any other lineage or in any prior filed application of any third party is explicitly reserved Nothing herein is to be construed as a promise.
It is noted that in this disclosure and particularly in the claims and/or paragraphs, terms such as “comprises”, “comprised”, “comprising” and the like can have the meaning attributed to it in U.S. patent law; e.g., they can mean “includes”, “included”, “including”, and the like; and that terms such as “consisting essentially of” and “consists essentially of” have the meaning ascribed to them in U.S. patent law, e.g., they allow for elements not explicitly recited, but exclude elements that are found in the prior art or that affect a basic or novel characteristic of the invention.
These and other embodiments are disclosed or are obvious from and encompassed by, the following Detailed Description.
Representative seeds of Solanum lycopersicum with the modified Slmyc2 gene of the invention, capable of conferring an aberrant glandular hair phenotype, that allows for the establishment of mites, in particular the predatory mites Amblyseius swirskii and/or Amblydromalus limonicus, were deposited under accession number NCIMB 42222 on Feb. 24, 2014 with NCIMB Ltd. (Ferguson Building, Craibstone Estate, Bucksburn, Aberdeen, AB21 9YA). All seeds of the deposit comprise the modified Slmyc2 gene homozygously. Plants grown from these seeds thus allow the establishment of mites, in particular the predatory mites Amblyseius swirskii and/or Amblydromalus limonicus.
The deposited seeds do not meet the DUS criteria which are required for obtaining plant variety protection, and can therefore not be considered to be a plant variety.
The Deposits with NCIMB Ltd. (Ferguson Building, Craibstone Estate, Bucksburn, Aberdeen, AB21 9YA), under deposit accession number NCIMB 42222 were made pursuant to the terms of the Budapest Treaty. Upon issuance of a patent, all restrictions upon the deposit will be removed, and the deposit is intended to meet the requirements of 37 CFR §§1.801-1.809. The deposit will be irrevocably and without restriction or condition released to the public upon the issuance of a patent and for the enforceable life of the patent. The deposit will be maintained in the depository for a period of 30 years, or 5 years after the last request, or for the effective life of the patent, whichever is longer, and will be replaced if necessary during that period.
The following detailed description, given by way of example, but not intended to limit the invention solely to the specific embodiments described, may best be understood in conjunction with the accompanying drawings.
Aldehyde: cis-3-hexenal
Monos: α-pinene, mycrene, carene, α- and β-phellandrene, p-cymene, limonene. Sesquiterpenes: δ-elemene, β-caryophyllene, α-humulene. Monoterpenoid: verbenene
†: corrected for limonene
‡: also known as α-caryophyllene
The surface of the various plant parts of tomato and other crops is covered with trichomes, both non-glandular and glandular. Non-glandular trichomes are usually regarded as ‘hairs’ and do not produce, store, or secrete specific biochemical compounds.
A glandular trichome typically consists of a stalk, made up of one or more cells, and one or more glandular cells at the tip of the stalk that form the glandular head. Four different types of glandular trichomes are identified in tomato and related Solanum species, namely types I, IV, VI, and VII. These types differ in size and length of the stalks, and in number of secretory cells that form the glandular head. A variety of biochemical compounds in tomato are produced in glandular trichomes. (McDowell et al., Plant Physiology Vol. 155, 524-539 (2011)).
Biochemical compounds that are produced by the various glandular trichomes in tomato may comprise terpenes, terpenoids, flavonoids, fatty acids, alkaloids, and acyl sugars such as acyl glucoses and acyl sucroses. These compounds are known to play important roles in attracting and repelling various insects and in determining susceptibility to certain diseases. However, many aspects of the roles of these metabolites are still unclear, and extensive research is ongoing to determine more precisely the functionality of glandular trichomes and the substances they excrete.
The invention thus relates to a modified Slmyc2 gene, which may comprise at least one modification as compared to the wild type genomic sequence of SEQ ID No. 5, which modification leads to reduction or absence of Slmyc2 protein activity, wherein the modified Slmyc2 gene is capable of conferring an aberrant glandular hair phenotype to a Solanum lycopersicum plant.
The modified slmyc2 gene is also referred to herein as “the gene of the invention”, or “the modified slmyc2 gene of the invention”. These terms are used interchangeably herein.
In an embodiment, the modification leading to the modified Slmyc2 gene, is selected from a modification that decreases the mRNA level of the Slmyc2 gene; a modification that decreases the level of the Slmyc2 protein; and/or a modification that decreases the activity of the Slmyc2 protein, as compared to the wild type Slmyc2 gene.
In a further embodiment, the modification leading to the modified Slmyc2 gene, results in the presence of a premature stop codon within the coding sequence.
In a preferred embodiment, the modification leading to the modified Slmyc2 gene, results in the presence of a premature stop codon within the coding sequence, in particular the modification which may comprise a single nucleotide polymorphism (SNP) on position 1477 of SEQ ID No. 2, being the coding sequence (CDS). The CDS is that portion of a gene, composed of exons, that codes for protein. SEQ ID No.2 may comprise the presence of a SNP from nucleotide G (wild type) to T. This SNP is the same as the SNP on position 4124 of SEQ ID No. 1, which is the corresponding genomic sequence. This SNP results in a stop codon at amino acid position 493 of SEQ ID No. 3, whereas the wild type amino acid sequence (SEQ ID No. 7) may comprise a Glycine residue at this position. This SNP, resulting in a modified Slmyc2 gene can be found in plants grown from seed of which a representative sample was deposited with the NCIMB under accession number NCIMB 42222.
In another embodiment, the modified Slmyc2 gene of the invention relates to any SNP occurring in SEQ ID No. 6, which is the wild type CDS, that results in the presence of a premature stop codon within that coding sequence. Such a SNP is referred to as a nonsense mutation. Any such a SNP will thus result in a premature stop codon in SEQ ID No. 6. Preferably, the modified Slmyc2 gene of the invention relates to any SNP occurring before position 1477 of SEQ ID No. 6 that results in the presence of a premature stop codon within that coding sequence. Any such SNP will thus result in a premature stop codon before amino acid position 493 of SEQ ID No. 7.
A SNP might also be a mutation in the coding sequence that codes for a different amino acid, instead of a stop codon. Such a SNP is referred to as a missense mutation. The invention also relates to missense mutations resulting in a modified Slmyc2 gene of in the invention.
Modifications in the coding sequence other than SNP's that might result in the modified Slmyc2 gene of the invention include insertions and/or deletions. Insertion of one or more nucleotides might affect proper mRNA splicing or result in a shift in the reading frame. These events can result in a decreased level of SlMYC2 protein and/or in a decreased level of SlMYC2 protein activity. Deletion of one or more nucleotides might, like insertions, result in a shift in the reading frame. This event can result in a decreased level of SlMYC2 protein and/or in a decreased level of SlMYC2 protein activity.
The invention also relates to modifications in the non-coding genomic sequence of Slmyc2, represented by SEQ ID No. 5. Modifications in the non-coding sequence include mutations in the intron sequence, the upstream and/or downstream sequence. The upstream sequence, the sequence before the start codon of the gene of the invention, may comprise the promoter and the 5′-untranslated region (5′-UTR), also called the leader sequence. Since these regions are involved in the regulation of the gene transcription to mRNA and the subsequent translation, and therefore in gene expression, suitable modification can lead to a decrease of the expression through a decrease of the Slmyc2 mRNA level and/or a decrease in the level of the SlMYC2 protein.
The aberrant glandular hair phenotype caused by the gene of the invention was intensively studied. It was determined that the aberrant glandular hair phenotype is particularly observed for type VI trichomes, but might also extend to other types of glandular hairs. Remarkably, the aberrant glandular hair phenotype for type VI glandular hairs on plants of the invention is characterized by the reduction and preferably absence of both mono- and sesquiterpenes, in particular α-pinene, myrcene, carene, α-phellandrene, β-phellandrene, p-cymene, limonene, δ-elemene, β-caryophyllene and/or α-humulene, and/or is characterized by deformed glandular hairs. The aberrant glandular hair phenotype of the invention is further characterized by the reduction and preferable absence of monoterpenoid compounds, in particular verbenene. Other volatiles, such as an aldehyde, were found to be present in aberrant type VI glandular hairs on plants of the invention as well as in the non-mutant background plants (see Example 5).
Of type VI glandular hairs found on plants of the invention, both the stalk cell as well as the head consisting of four glandular cells appear shrunken, less developed and/or dried when compared to the same cells of non-mutated type VI glandular hairs. These deformed type VI glandular hairs also appear to be smaller than non-mutated type VI glandular hairs. This reduction in size might be the direct result from the shrunken, less-developed and/or dried character (see
The aberrant glandular hair phenotype does not attract the predatory mites, but it enables and facilitates the mites to roam freely on the plants. ‘Predatory mites’ or ‘mites’ as referred to herein, belong to the Phytoseiidae family. The invention relates to this complete family, which may comprise the species Amblyseius swirskii, Amblydromalus limonicus, Phytoseiulus persimilis and Neoseiulus californicus.
Thus, the invention relates to a modified Slmyc2 gene, which may comprise at least one modification as compared to the wild type genomic sequence of SEQ ID No. 5, which modification leads to reduction or absence of Slmyc2 protein activity, wherein the modified Slmyc2 gene is capable of conferring an aberrant glandular hair phenotype to a Solanum lycopersicum plant, wherein the aberrant glandular hair phenotype is further characterized by the reduction and preferably absence of terpenes, in particular α-pinene, myrcene, carene, α-phellandrene, β-phellandrene, p-cymene, limonene, δ-elemene, β-caryophyllene and/or α-humulene, and/or is characterized by deformed glandular hairs. The aberrant glandular hair phenotype, or the trait of the invention, allows for the establishment of predatory mites, in particular Amblyseius swirskii and/or Amblydromalus limonicus, on a Solanum lycopersicum plant. The aberrant glandular hair phenotype, or the aberrant glandular hair phenotype which allows for the establishment of predatory mites, in particular Amblyseius swirskii and/or Amblydromalus limonicus, is also referred to herein as “the trait” or “the trait of the invention”. These terms are used interchangeably herein.
The said aberrant glandular hair phenotype of the invention is conferred by a modified Slmyc2 gene, the inheritance of which is consistent with that of a monogenic trait. Preferably, said inheritance is consistent with that of a monogenic intermediate trait. In this context, the term “intermediate” is to mean that the aberrant glandular hair phenotype is observable in plants which may comprise the modified Slmyc2 gene in homozygous as well as in heterozygous state.
An example of the modified Slmyc2 gene can be found in plants grown from seed of which a representative sample was deposited with the NCIMB under accession number NCIMB 42222.
In an embodiment, the invention relates to a Solanum lycopersicum plant which may comprise the modified Slmyc2 gene of the invention.
The invention relates to a Solanum lycopersicum plant that may comprise a modified Slmyc2 gene, wherein said modified Slmyc2 gene results in an aberrant glandular hair phenotype that allows for the establishment of predatory mites, in particular Amblyseius swirskii and/or Amblydromalus limonicus, on said tomato plant. This plant is also referred to herein as a plant of the invention.
In a preferred embodiment, a plant of the invention may comprise the modified Slmyc2 gene in homozygous state. When a plant comprises the modified Slmyc2 gene in homozygous state, the trait of the invention is characterized by the reduction and preferably absence of terpenes, in particular α-pinene, myrcene, carene, α-phellandrene, β-phellandrene, p-cymene, limonene, δ-elemene, β-caryophyllene and/or α-humulene, and/or is characterized by deformed glandular hairs.
In an embodiment, a plant of the invention may comprise the modified Slmyc2 gene in heterozygous state. When a plant comprises the modified Slmyc2 gene in heterozygous state, the trait of the invention is characterized by the reduction of terpenes, in particular α-pinene, myrcene, carene, α-phellandrene, β-phellandrene, p-cymene, limonene and/or δ-elemene, and/or is characterized by deformed glandular hairs. In this context, the term “reduction of terpenes” is to mean that the level of terpenes is reduced but not completely absent when compared to plants which may comprise the wild type Slmyc2 gene homozygously. The level of terpenes is, in increasing order of preference, 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90% reduced when compared with the level of terpenes in a plant which may comprise the wild type Slmyc2 gene homozygously.
The present invention also relates to a Solanum lycopersicum plant, wherein the modified Slmyc2 gene of the invention is the same as or equivalent to the modified Slmyc2 gene that is found in or obtainable from the genome of Solanum lycopersicum plants grown from seeds of which a representative sample was deposited with the NCIMB under accession number NCIMB 42222. With the same or equivalent, it is meant that no segregation for the trait of the invention is observed in the F2 resulting from a cross that is part of an allelism test as described herein. With the same or equivalent, reference is also made to a myc2 gene that is obtained from a wild relative of Solanum lycopersicum and modified to confer the same aberrant glandular hair phenotype. In this respect, wild relatives of of Solanum lycopersicum include: S. arcanum, S. chmielewskii, S. neorickii, S. cheesmaniae, S. galapagense, S. pimpinellifolium, S. chilense, S. corneliomulleri, S. habrochaites, S. huaylasense, S. sisymbriifolium, S. peruvianum, and S. pennellii.
The invention further relates to a Solanum lycopersicum plant which may comprise the modified Slmyc2 gene homozygously or heterozygously, and which is causative of an aberrant glandular hair phenotype, that allows for the establishment of mites, in particular the predatory mites Amblyseius swirskii and/or Amblydromalus limonicus on said tomato plant, when compared to a Solanum lycopersicum plant not carrying said modified Slmyc2 gene.
In one embodiment, the invention provides a Solanum lycopersicum plant exhibiting the trait of the invention, conferred by a modified Slmyc2 gene, which Solanum lycopersicum plant is obtainable by crossing a Solanum lycopersicum plant which may comprise said modified Slmyc2 gene of which a representative sample of seed was deposited under NCIMB accession number NCIMB 42222 with another Solanum lycopersicum plant to produce an F1, subsequently selfing said F1 to obtain an F2, and selecting a Solanum lycopersicum plant of the invention.
Furthermore, it was found during the research leading to the present invention that the modified Slmyc2 gene of the invention is located on chromosome 8 of Solanum lycopersicum.
More in particular, in the deposit NCIMB 42222 the modified Slmyc2 gene of the invention, the genomic sequence of which is represented by SEQ ID No. 1, is located on chromosome 8 of Solanum lycopersicum.
The invention also relates to a Solanum lycopersicum plant, which may comprise the modified Slmyc2 gene of the invention, wherein said modified Slmyc2 gene is obtainable by introgression from a Solanum lycopersicum plant grown from seeds of which a representative sample was deposited under NCIMB accession number NCIMB 42222, and wherein said modified Slmyc2 gene, the genomic sequence of which is represented by SEQ ID No. 1, in the seeds of the seed deposit number NCIMB 42222 is positioned on chromosome 8 of Solanum lycopersicum.
A Solanum lycopersicum plant of the invention can be suitably identified amongst descendants from a cross between a Solanum lycopersicum plant not allowing the establishment of predatory mites, in particular Amblyseius swirskii and/or Amblydromalus limonicus, and a plant that carries the modified Slmyc2 gene, preferably in the homozygous state, by growing F2 plants from seeds that are the result of the initial cross and a selfing step, and selecting plants expressing the aberrant glandular hair phenotype. Plants can be selected on the basis of determining the phenotype through a bioassay as described in Example 2, or through the identification of the modified Slmyc2 gene, for example by comparison with SEQ ID No. 5 or SEQ ID No. 6 or using markers that are disclosed herein.
In order to determine equivalence of genetic determinants that cause a particular phenotypic trait the well-known allelism test, more specifically designated as complementation test, can be used. To determine whether a plant shows the same aberrant glandular hair phenotype as plants of the invention, an allelism test can be performed in which a tester plant which is homozygous for the modified Slmyc2 gene of the invention is crossed with material to be tested that is also homozygous for its genetic determinant. When no segregation for aberrant glandular hair phenotype is present in the F2 of the cross, the genetic determinants have been proven to be equivalent or the same and the plant is thus a plant of the invention.
The tester plant is suitably a plant of deposit NCIMB 42222, or a progeny plant of the deposit showing an aberrant glandular hair phenotype that allows for the establishment of mites, in particular the predatory mites Amblyseius swirskii and/or Amblydromalus limonicus on said Solanum lycopersicum plant.
The Solanum lycopersicum plant of the invention can be any one of the types of cultivated tomato from the following group: cherry, plum, cocktail, truss, beefsteak, round, grape, etc.
In another embodiment, the invention relates to a Solanum lycopersicum seed which may comprise the modified Slmyc2 gene of the invention.
This seed is also referred to herein as a seed of the invention.
In a further embodiment, the plant grown from seed of the invention allows for the establishment of mites, in particular the predatory mites Amblyseius swirskii and/or Amblydromalus limonicus, when the modified Slmyc2 gene is present in heterozygous, preferably in the homozygous state.
The invention further relates to a Solanum lycopersicum seed which may comprise said modified Slmyc2 gene, which seed is capable of growing into a plant that exhibits the trait of the invention.
The invention also relates to progeny of the Solanum lycopersicum plants, cells, tissues, and seeds of the invention, wherein the progeny plants, cells, tissues, and seeds may comprise the modified Slmyc2 gene. Such progeny can in itself be plants, cells, tissues, or seeds.
The term “progeny” as used herein is intended to mean the first and all subsequent descendants from a cross with a plant of the invention that may comprise the said modified Slmyc2 gene. “Progeny” also encompasses plants that carry the modified Slmyc2 gene of the invention in homozygous or heterozygous state and are obtained from other plants or progeny of plants of the invention by vegetative propagation or multiplication.
The invention relates to a progeny plant of a Solanum lycopersicum plant which may comprise the modified Slmyc2 gene of the invention in homozygous or heterozygous state.
The invention also relates to a progeny plant of Solanum lycopersicum plant of the invention that exhibits the aberrant glandular hair phenotype, allowing for the establishment of mites, in particular the predatory mites Amblyseius swirskii and/or Amblydromalus limonicus, on said progeny plant. This progeny plant thus may comprise the modified Slmyc2 gene in the heterozygous, preferably homozygous state.
According to a further aspect thereof, the invention relates to propagation material capable of developing into and/or being derived from a Solanum lycopersicum plant which may comprise the modified Slmyc2 gene of the invention in homozygous or heterozygous state.
This propagation material is also referred to herein as propagation material of the invention.
In one embodiment, such propagation material is formed by a seed of the Solanum lycopersicum plant of the invention, wherein the seed is capable of developing into a plant that may comprise the modified Slmyc2 gene of the invention in homozygous or heterozygous state.
In a further embodiment, the propagation material of the invention is selected from the group consisting of microspores, pollen, ovaries, ovules, embryos, embryo sacs, egg cells, cuttings, roots, root tips, hypocotyls, cotyledons, stems, leaves, flowers, anthers, seeds, meristematic cells, protoplasts and cells.
In an additional embodiment, the invention relates to tissue culture of propagation material of the invention.
In another embodiment, the plant developed out of the propagation material may comprise a modified Slmyc2 gene as found in Solanum lycopersicum plants grown from seeds of which representative seed was deposited under NCIMB accession number NCIMB 42222.
The invention also relates to the harvested part of the Solanum lycopersicum plant which may comprise the modified Slmyc2 gene of the invention.
Moreover, the invention relates to a food product which may comprise one or more harvested parts of a Solanum lycopersicum plant which may comprise the modified Slmyc2 gene of the invention. The harvested part or food product can be, or may comprise the fruits of a Solanum lycopersicum plant. A preferred food product which may comprise a fruit—or parts thereof—of the Solanum lycopersicum plant of the invention is a salad, wherein the fruit may optionally be mixed with leaves of for example lettuce, spinach, endive, chicory, beet, Swiss chard, etc. The food product or harvested part may have undergone one or more processing steps. Such a processing step might comprise, but is not limited to any one of the following treatments or combinations thereof: cutting, washing, cooking, steaming, baking, frying, pasteurizing, freezing, grinding, extracting oil, pickling, or fermenting. The processed form that is obtained is also part of this invention.
Yet another aspect of the invention relates to the use of the modified Slmyc2 gene of the invention for the development of a Solanum lycopersicum plant on which predatory mites, in particular Amblyseius swirskii and/or Amblydromalus limonicus can establish.
In an embodiment, the invention relates to the use of the modified Slmyc2 gene of the invention for the development of a Solanum lycopersicum plant on which predatory mites, in particular Amblyseius swirskii and/or Amblydromalus limonicus can establish, wherein the establishment of said mites is allowed by an aberrant glandular hair phenotype.
In yet another embodiment, the invention relates to the use of the modified Slmyc2 gene of the invention for the development of a Solanum lycopersicum plant, wherein the modified Slmyc2 gene of the invention is capable of conferring an aberrant glandular hair phenotype to said Solanum lycopersicum plant, wherein the aberrant glandular hair phenotype is characterized by the absence of terpenes, in particular α-pinene, myrcene, carene, α-phellandrene, β-phellandrene, p-cymene, limonene, δ-elemene, β-caryophyllene and/or α-humulene, and/or is characterized by deformed glandular hairs.
In another embodiment, the invention relates to the use of a plant of the invention in combination with the predatory mite Amblyseius swirskii for the control of a plant pest, in particular Aculops lycopersici, Bemisia tabaci and/or Frankliniella occidentalis.
In another embodiment, the invention relates to the use of a plant of the invention in combination with the predatory mite Amblydromalus limonicus for the control of a plant pest, in particular Aculops lycopersici, Bemisia tabaci and/or Frankliniella occidentalis.
In another embodiment, the invention relates to the use of a plant of the invention in combination with the predatory mites Amblyseius swirskii and Amblyseius swirskii for the control of a plant pest, in particular Aculops lycopersici, Bemisia tabaci and/or Frankliniella occidentalis.
In another embodiment, the invention relates to the use of a plant of the invention in combination with the predatory mite Phytoseiulus persimilis for the control of a plant pest, in particular Tetranychus urticae.
In another embodiment, the invention relates to the use of a plant of the invention in combination with the predatory mite Neoseiulus californicus for the control of a plant pest, in particular Tetranychus urticae.
In another embodiment, the invention relates to the use of a plant of the invention in combination with the predatory mite Phytoseiulus persimilis and Neoseiulus californicus for the control of a plant pest, in particular Tetranychus urticae.
The trait of the invention may be identified by, for instance, using suitable markers.
The skilled person knows how to develop new markers linked to a trait using already known genes, markers, QTLs, alleles or other DNA molecules that are associated with a certain trait, and sequences thereof.
The term “genetic determinant” as used herein encompasses one or more QTLs, genes, or alleles. These terms are used interchangeably. A genetic determinant can be identified by the position on a genetic map, or by indication of the location on a linkage group or chromosome. When a genetic determinant is no longer linked to a specific molecular marker, but its position on a chromosome as defined on a genetic map is unaltered, this genetic determinant is still the same as when it was linked to the molecular marker. The trait that it confers is therefore also still the same.
The invention further relates to a cell of a Solanum lycopersicum plant of the invention, which cell may comprise the modified Slmyc2 gene of the invention. The said cell thus may comprise the genetic information encoding the said aberrant glandular hair phenotype, in particular genetic information which is substantially identical, preferably completely identical to the genetic information encoding the said aberrant glandular hair phenotype, wherein the said genetic information is the modified Slmyc2 gene, which may comprise at least one modification as compared to the wild type sequence of SEQ ID No. 5. Preferably, the cell of the invention is part of a plant or plant part, but the cell may also be in isolated form.
The invention also relates to a cell of a Solanum lycopersicum plant, which cell may comprise the modified Slmyc2 gene of the invention, and which plant is obtained or obtainable by transferring the trait of the invention into an agronomically valuable Solanum lycopersicum plant. The trait of the invention is caused by the modified Slmyc2 gene of the invention which is as found in seeds of which a representative sample was deposited under NCIMB accession number NCIMB 42222.
The invention further relates to the use of seeds of a Solanum lycopersicum plant, which seed may comprise the modified Slmyc2 gene of the invention for transferring the modified Slmyc2 gene into another agronomically valuable Solanum lycopersicum plant.
The invention also relates to the use of seeds of which a representative sample was deposited under NCIMB accession number NCIMB 42222 for transferring the modified Slmyc2 gene of the invention into another agronomically valuable Solanum lycopersicum plant.
The invention also relates to the use of a Solanum lycopersicum plant of the invention for the cultivation and preservation of predatory mites or a colony therefrom, with the aim of controlling an insect pest.
The invention also relates to the use of a Solanum lycopersicum plant which may comprise the modified Slmyc2 gene of the invention, as a crop.
The invention also relates to the use of a Solanum lycopersicum plant which may comprise the modified Slmyc2 gene of the invention as a source of seed.
The invention also relates to the use of a Solanum lycopersicum plant which may comprise the modified Slmyc2 gene of the invention as a source of propagating material.
The invention also relates to the use of a Solanum lycopersicum plant which may comprise the modified Slmyc2 gene for consumption.
In plant species other than Solanum lycopersicum, the homolog of Slmyc2 might influence the glandular hair phenotype. Therefore, the invention also relates to a modified myc2 gene capable of conferring an aberrant glandular hair phenotype to a plant, which modification leads to reduction or absence of MYC2 protein activity, and wherein the modification may be selected from a modification that decreases the mRNA level of the myc2 gene; a modification that decreases the level of the MYC2 protein; and/or a modification that decreases the activity of the MYC2 protein, as compared to a non-modified wild type myc2 gene.
The invention also relates to a modified myc2 gene that leads to the reduction and/or absence of terpenes in a plant. The modified myc2 gene can be present in heterozygous or homozygous state. The myc2 gene can be modified in the same or equivalent way as the Slmyc2 gene, as described herein.
The aberrant glandular hair phenotype conferred by modified myc2 gene is characterized by the absence and/or reduction of terpenes, in particular α-pinene, myrcene, carene, α-phellandrene, β-phellandrene, p-cymene, limonene, δ-elemene, β-caryophyllene and/or α-humulene, and/or is characterized by deformed glandular hairs. In this respect, absence of terpenes is a level of terpenes that is not detectable by currently available measurement techniques and/or is at least, in increasing order of preference, 95%, 96%, 97%, 98%, 99% or 100% lower than the level of terpenes in a plant which may comprise the wildtype myc2 gene homozygously. The term “reduction of terpenes” is to mean in this context that the level of terpenes is reduced but not completely absent when compared to plants which may comprise the wild type myc2 gene homozygously. The level of terpenes is, in increasing order of preference, 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90% reduced when compared with the level of terpenes in a plant which may comprise the wild type myc2 gene homozygously.
In an embodiment, a plant of the invention which may comprise the modified myc2 gene exhibits the aberrant glandular hair phenotype of the invention, allowing for the establishment of predatory mites, in particular Amblyseius swirskii and/or Amblydromalus limonicus on said plant.
In a preferred embodiment, a plant of the invention may comprise the modified myc2 gene in homozygous state. When a plant comprises the modified myc2 gene in homozygous state, the aberrant glandular hair phenotype allowing for the establishment of predatory mites, in particular Amblyseius swirskii and/or Amblydromalus limonicus on said plant, is characterized by the absence and/or reduction of terpenes, in particular α-pinene, myrcene, carene, α-phellandrene, β-phellandrene, p-cymene, limonene, δ-elemene, β-caryophyllene and/or α-humulene, and/or is characterized by deformed glandular hairs.
In an embodiment, a plant of the invention may comprise the modified myc2 gene in heterozygous state. When a plant comprises the modified myc2 gene in heterozygous state, the aberrant glandular hair phenotype allowing for the establishment of predatory mites, in particular Amblyseius swirskii and/or Amblydromalus limonicus on said plant, is characterized by the reduction of terpenes, in particular α-pinene, myrcene, carene, α-phellandrene, β-phellandrene, p-cymene, limonene, δ-elemene, β-caryophyllene and/or α-humulene. The term “reduction of terpenes” is defined above.
The invention further relates to the use of such a modified myc2 gene for the development of a plant that may comprise a reduced level of terpenes or a plant showing absence of terpenes.
The invention further relates to the use of such a modified myc2 gene for the development of a plant that exhibits an aberrant glandular hair phenotype, wherein said aberrant glandular phenotype is caused by the reduction or absence of MYC2 protein activity as compared to non-modified wild type MYC2 protein activity.
One way in which the modified myc2 gene can be used is by reducing its expression. The reduced expression can be achieved by a decrease in the mRNA level of the myc2 gene; a decrease in the level of MYC2 protein; and/or a decrease in the activity of the MYC2 protein, as compared to the mRNA level, protein level or protein activity of a non-modified wild type myc2 gene.
The modified myc2 gene of the invention can be used to confer an aberrant glandular phenotype to a plant, wherein the plant is selected from any of the species Capsicum anuum, Cucumis melo, Cucumis sativus and Citrullus lanatus. Also, the modified myc2 gene can be used for reducing or eliminating terpenes in those plant species. The wild type genomic sequence, the wild type CDS and the wild type amino acid sequence for myc2 of Capsicum annuum are depicted with SEQ ID No. 9, 10 and 11 respectively. The wild type genomic sequence, the wild type CDS and the wild type amino acid sequence for myc2 of Cucumis sativus are depicted with SEQ ID No. 12, 13 and 14 respectively. The wild type genomic sequence, the wild type CDS and the wild type amino acid sequence for myc2 of Cucumis melo are depicted with SEQ ID No. 15, 16 and 17 respectively. The wild type genomic sequence, the wild type CDS and the wild type amino acid sequence for myc2 of Citrillus lanatus are depicted with SEQ ID No. 18, 19 and 20 respectively.
Both the Slmyc2 as the myc2 genes can be modified by means of mutagenesis. Mutagenesis may comprise the random introduction of at least one modification by means of one or more chemical compounds, such as ethyl methanesulphonate, nitrosomethylurea, hydroxylamine, proflavine, N-methyl-N-nitrosoguanidine, N-ethyl-N-nitrosourea, N-methyl-N-nitro-nitrosoguanidine, diethyl sulphate, ethylene imine, sodium azide, formaline, urethane, phenol and ethylene oxide, and/or by physical means, such as UV-irradiation, fast-neutron exposure, X-rays, gamma irradiation, and/or by insertion of genetic elements, such as transposons, T-DNA, retroviral elements.
Mutagenesis also may comprise the more specific, targeted introduction of at least one modification by means of homologous recombination, oligonucleotide-based mutation induction, zinc-finger nucleases (ZFNs), transcription activator-like effector nucleases (TALENs) or Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR) systems.
A modified Slmyc2 or myc2 gene of the invention can alternatively be introduced into a plant using genetic modification. Genetic modification may comprise transgenic modification or transgenesis, using a gene from a non-crossable species or a synthetic gene, and cisgenic modification or cisgenesis, using a natural gene, coding for an (agricultural) trait, from the crop plant itself or from a sexually compatible donor plant.
In one embodiment the modified Slmyc2 or myc2 gene is an exogenous Slmyc2 or myc2 gene which can be introduced into a plant by a transgenic method or a cisgenic method.
The invention also relates to a modified recombinant Slmyc2 or myc2 gene, wherein the expression of said modified recombinant Slmyc2 or myc2 gene is driven by a strong promoter, which promoter is operably linked to a Slmyc2 or myc2 gene sequence, which gene sequence includes the 5′-UTR, the CDS, and/or the 3′-UTR. Many examples of strong constitutive promoters are known in the art; some of the most commonly used ones are e.g. the cauliflower mosaic virus 35S-promoter (pCaMV 35S) and modified versions thereof, ubiquitin promoters from various plant species, actin promoters from various plant species, and the promoter of Elongation Factor 1 alpha (EkF1α).
In one embodiment the invention relates to a gene construct, which gene construct may comprise a selectable marker, a promoter sequence, a Slmyc2 or myc2 gene sequence, and a terminator sequence.
In one aspect the invention relates to a method for producing a Solanum lycopersicum plant which may comprise a modified Slmyc2 gene, capable of conferring an aberrant glandular hair phenotype, that allows for the establishment of mites, in particular the predatory mites Amblyseius swirskii and/or Amblydromalus limonicus, which may comprise
The word “trait” in the context of this application refers to the phenotype of the plant. In particular, the word “trait” refers to the trait of the invention, more in particular to the aberrant glandular hair phenotype that allows for the establishment of mites, in particular the predatory mites Amblyseius swirskii and/or Amblydromalus limonicus as a result of the presence of a modified Slmyc2 gene. The term “genetic determinant” is used for the genetic information in the genome of the plant that confers the trait of the invention, the genetic information being the modified Slmyc2 gene. When a plant exhibits the trait of the invention, its genome may comprise the genetic determinant conferring the trait of the invention. The plant thus has the genetic determinant of the invention. According to the invention, the genetic determinant may comprise the modified Slmyc2 gene.
It is clear that the parent plant that provides the trait of the invention is not necessarily a plant grown directly from the deposited seeds. The parent plant can also be a progeny plant from seed that is identified to comprise the trait of the invention by other means.
In one aspect, the invention relates to a method for producing a Solanum lycopersicum plant which may comprise a modified Slmyc2 gene, capable of conferring an aberrant glandular hair phenotype, that allows for the establishment of mites, in particular the predatory mites Amblyseius swirskii and/or Amblydromalus limonicus, which may comprise
The invention additionally provides a method of introducing another desired trait into a Solanum lycopersicum plant which may comprise a modified Slmyc2 gene, capable of conferring an aberrant glandular hair phenotype, that allows for the establishment of mites, in particular the predatory mites Amblyseius swirskii and/or Amblydromalus limonicus, which may comprise:
a) crossing a Solanum lycopersicum plant which may comprise a modified Slmyc2 gene, representative seed of which were deposited under deposit number NCIMB 4222, with a second Solanum lycopersicum plant that exhibits a desired trait to produce F1 progeny;
In one embodiment selection for plants exhibiting the aberrant glandular hair phenotype of the invention is performed in the F1 or any further generation, preferably by using SEQ ID No. 1 or 2. In another aspect selection for the trait of the invention is started in the F2 of a cross or alternatively of a backcross. Selection of plants in the F2 can be performed phenotypically as well as by using the said sequences which directly or indirectly detect the genetic determinant underlying the trait.
In one embodiment selection for plants exhibiting the aberrant glandular hair phenotype is started in the F3 or a later generation.
In one embodiment the plant which may comprise the genetic determinant is a plant of an inbred line, a hybrid, a doubled haploid, or of a segregating population.
The invention further provides a method for the production of a Solanum lycopersicum plant which may comprise the modified Slmyc2 gene of the invention by using a doubled haploid generation technique to generate a doubled haploid line which may comprise the modified Slmyc2 gene.
The invention furthermore relates to hybrid seed that can be grown into a Solanum lycopersicum plant which may comprise the modified Slmyc2 gene of the invention, and to a method for producing such hybrid seed which may comprise crossing a first parent plant with a second parent plant and harvesting the resultant hybrid seed, wherein said first parent plant and/or said second parent plant is a plant of the invention.
In one embodiment, the invention relates to a method for producing a hybrid Solanum lycopersicum plant which may comprise the modified Slmyc2 gene of the invention, which may comprise crossing a first parent Solanum lycopersicum plant with a second parent Solanum lycopersicum plant and harvesting the resultant hybrid seed, of which the first parent plant and/or the second parent plant may comprise the modified Slmyc2 gene of the invention, and growing said hybrid seeds into hybrid plants.
The invention also relates to a method for the production of a Solanum lycopersicum plant which may comprise a modified Slmyc2 gene, capable of conferring an aberrant glandular hair phenotype, that allows for the establishment of mites, in particular the predatory mites Amblyseius swirskii and/or Amblydromalus limonicus by using a seed that may comprise the modified Slmyc2 gene of the invention for growing the said Solanum lycopersicum plant. The seeds are suitably seeds of which a representative sample was deposited with the NCIMB under deposit number NCIMB 42222.
The invention also relates to a method for obtaining a Solanum lycopersicum plant which exhibits an aberrant glandular hair phenotype, that allows for the establishment of mites, in particular the predatory mites Amblyseius swirskii and/or Amblydromalus limonicus, which may comprise reducing the endogenous level of SlMYC2 protein in the plant by mutation of the Slmyc2 gene of the plant.
The invention also relates to a method for seed production which may comprise growing Solanum lycopersicum plants from seeds of which a representative sample was deposited with the NCIMB under deposit number NCIMB 42222, allowing the plants to produce seeds, and harvesting those seeds. Production of the seeds is suitably done by crossing or selfing.
In one embodiment, the invention relates to a method for producing a Solanum lycopersicum plant which may comprise the modified Slmyc2 gene of the invention by using tissue culture.
The invention furthermore relates to a method for producing of a Solanum lycopersicum plant which may comprise the modified Slmyc2 gene of the invention by using vegetative reproduction.
In one embodiment, the invention relates to a method for producing a Solanum lycopersicum plant which may comprise the modified Slmyc2 gene of the invention by using a method for genetic modification to introgress said modified Slmyc2 gene into the Solanum lycopersicum plant. Genetic modification may comprise transgenic modification or transgenesis, using a gene from a non-crossable species or a synthetic gene, and cisgenic modification or cisgenesis, using a natural gene, coding for an (agricultural) trait, from the crop plant itself or from a sexually compatible donor plant.
The invention also relates to a breeding method for developing Solanum lycopersicum plants which may comprise the modified Slmyc2 gene of the invention, wherein germplasm which may comprise said modified Slmyc2 gene of the invention is used. Representative seed of said plant which may comprise the modified Slmyc2 gene of the invention and being representative for the germplasm was deposited with the NCIMB under deposit number NCIMB 42222.
In a further embodiment the invention relates to a method for producing a Solanum lycopersicum plant which may comprise the modified Slmyc2 gene of the invention, wherein progeny or propagation material of a plant which may comprise the modified Slmyc2 gene conferring the trait of the invention is used as a source to introgress the said trait into another Solanum lycopersicum plant. Representative seed of a plant which may comprise the modified Slmyc2 gene of the invention was deposited with the NCIMB under deposit number NCIMB 42222.
The invention provides preferably a Solanum lycopersicum plant which may comprise a modified Slmyc2 gene, capable of conferring an aberrant glandular hair phenotype, that allows for the establishment of mites, in particular the predatory mites Amblyseius swirskii and/or Amblydromalus limonicus, which plant is obtainable by any of the methods herein described and/or familiar to the skilled person.
The aberrant glandular hair phenotype conferred by the modified Slmyc2 gene of the invention enables the establishment on the plant of predatory mites that do normally not establish on tomato plants with a non-aberrant glandular hair phenotype and thus allows biological pest control by means of these mites.
The present invention will be elucidated in the following examples. These examples are for illustrative purposes only and are not to be construed as limiting the present invention in any way.
Although the present invention and its advantages have been described in detail, it should be understood that various changes, substitutions and alterations can be made herein without departing from the spirit and scope of the invention as defined in the appended claims.
The present invention will be further illustrated in the following Examples which are given for illustration purposes only and are not intended to limit the invention in any way.
Creation of Solanum lycopersicum Plants of the Invention
Seeds of two Solanum lycopersicum breeding lines, TR306 and T029, were treated with ems (ethyl methane sulfonate) by submergence of approximately 10.000 seeds into an aerated solution of 0.5% (w/v) ems during 24 hours at room temperature.
The treated seeds were germinated and the resulting plants were grown in a greenhouse to produce M2 seeds.
After maturation, M2 seeds were harvested and bulked in one pool. The resulting pool of M2 seeds was used as starting material to identify individual M2 plants that showed an aberrant glandular hair phenotype.
The efficacy of the genetic modification procedure was assessed by determining the occurrence of bleached plants, which is indicative for chlorophyll loss due to modifications in genes directly or indirectly involved in the formation or accumulation of chlorophyll. The type VI trichome phenotype is depicted in
Identification of a Solanum lycopersicum Plant that Allows for the Establishment the Predatory Mite Amblyseius swirskii
Two breeding lines (TR306 and T029), a commercially available hybrid and three mutants resulting from the experiment as described in Example 1 were used in a bioassay to investigate whether the predatory mite Amblyseius swirskii is able to establish on these Solanum lycopersicum plants. As a positive control, Capsicum annuum variety Compas RZ was also included in this experiment.
In Table 1, an overview of the lines and varieties is given. The bioassay took place in a multi-tunnel greenhouse in Spain under Mediterranean growing conditions. This greenhouse was divided into 4 compartments and one of them was divided into 40 walk-in cages of 5×3.5×4 meter (l×w×h), of which five were used during the experiment. Treatments were compared in a complete randomized block design with five replicates of seven plant species: six tomato varieties (5 selected+1 commercial [negative control]) and 1 sweet pepper (positive control).
Each replicate consisted of two potted plants of each line or variety which were isolated using sticky bands on the pot and the overhead thread used to train the plants to avoid movement of predatory mites between adjacent replicates. One replicate of each plant species was allocated in each block (cage). Seeds of these plants were sown at the end of July 2012 and placed as duplicate of each tested line/variety into a total of 6 cages.
A. swirskii predatory mites were released onto 6 week old plants, by sprinkling the carrying material that comprised the mites over all plants at a rate of 100 predatory mites/plant. Quantity of mites per gram of carrying material was used to estimate the amount to release.
The predatory mites were initially fed by adding pollen ad libitum and additions started after predator release and continued weekly for three weeks thereafter. Plants were sampled biweekly for 6 weeks, beginning one week after the release of the predatory mites. In each sampling, five plants were randomly selected in each experimental cage and five leaves were sampled from each of these five randomly selected plants. Leaves were selected at random along the plant. On each leaf, immature stages (larvae, protonymphs, and deutonymphs) and adults of phytoseiid mites were counted.
The results are displayed in
The Solanum lycopersicum mutant comprising the modified Slmyc2 gene of the invention was crossed with parent line TR306. From this cross, a F2 mapping population was generated, which was used for population-specific genetic map construction and QTL-mapping.
In total, 940 markers were used to analyze the 86 offspring individuals. Of these, 241 were polymorphic, informative (enough segregation) and useful (not many U-scores).
The F2 individuals were scored in two classes: hl (having the trait of the invention), wt (wild type phenotype, including unclear phenotypes).
As the trait was being considered (monogenic) recessive, this should result in a 3:1 segregation of the trait. Indeed, the trait distribution in this translation is wt:hl 61:25, which is not significantly different from the expected 3:1 ratio (chi2-test=0.38).
Linkage analysis was performed with MapQTL 6.0. First, interval mapping was performed to identify regions or markers linked to the trait. Second, co-factors were selected after which (as a third step) MQM-mapping was performed.
The coverage of chromosome 8 by polymorphic markers is rather low, as only five markers were identified. As the interval in which the trait is mapped is considerably large (at least 12 cM), analysis of the population with more markers was necessary for fine-mapping of the trait. However, given the fact that many markers appeared to be non-polymorphic on chromosome 8 in this cross, that might need additional initial effort in marker selection.
Besides the QTL that was mapped as described in Example 3, it was investigated whether the gene underlying the trait of the invention could be identified.
Whole genome sequencing (WGS) of the plant of the invention and of the non-mutant background was performed. As in example 3 it was shown that chromosome 8 comprised the modified Slmyc2 gene of the invention, all 25 homozygous SNP markers generated on this chromosome were taken into account. Of these 25 markers, 4 markers were found non-discriminatory, so no difference between the plant of the invention and the non-mutant background was observed.
A total of 227 plants from multiple F4 populations was phenotyped and 80 individuals showed the phenotype of the invention. Remarkably, one out the 21 markers, was 100% predictive for all 80 plants of the invention. For 21 of these plants, marker SL06992 gave an unique positive score. This SNP marker, designated SL06992 (SEQ ID No. 4) was blasted and found to localize on the same place on chromosome 8 as the AUGUSTUS predicted gene SL2_40ch08.g6 was annotated. In this annotation, the nucleotide at position 4124 of the genomic sequence is changed from G to T in plants of the invention. This corresponds with the same position in SEQ ID No. 8, representing the wild type sequence. Said nucleotide change results in a stop codon at position 493 of the amino acid, thereby creating a truncated version of the protein.
In order to measure terpene levels in plants of the invention, i.e. plants that comprise the modified Slmyc2 gene, already topped Solanum lycopersicum plants were used. Samples were taken from the first, second and third leaf from the top of the plant. A total of five leaf discs of 0.71 cm2 were collected. They were stored in a 10 ml vial and 1.0 ml of the solvent dichloromethane was added.
Subsequently, the leaf discs were mildly shaken. After 45-90 minutes, the solvent was transferred in another vial. Solvent extracts were stored at −20° C. until analysis.
In performing the analysis, 200 μl of the solvent comprising volatiles was mixed with 5 μl of the internal standard nonylacetate. Of this mixture, 1 μl was injected in the gas chromatography-mass spectrometry (GC-MS) instrument.
In order to show the ratio of volatile amounts for plants of the invention and heterozygous and wild type plants, the results are shown in arbitrary units. The values given in
From the results, it becomes clear that both the mono- and sesquiterpenes are absent in the plant of the invention, whereas in plants not comprising the modified Slmyc2 of the invention the presence of terpenes was shown to be significant (P<0.05).
In order to determine whether the absence of certain terpenes is related to expression of TPS genes, a qPCR experiment was designed. The three top leaves of plants of the invention were sampled, pooled and RNA was isolated using the RNeasy kit (Qiagen), using 100 mg of plant tissue. cDNA was synthesized using a Maxima cDNA synthesis kit (Thermo Scientific) starting from a total of 1000 ng RNA. Primer combinations to detect expression of TPS genes in tomato were derived from Falara et al. (Plant. Phys. 157, 770-789 (2011). A qPCR run was executed using the Rotor-Gene Q PCR cycler (Qiagen).
For 12 TPS genes the fold change regulation in plants of the invention containing the mutation homozygously or heterozygously and the non-mutant background was detected, which is shown in
Evaluation of the Effects of Plants that Comprise the Modified Slmyc2 Gene on the Establishment and Effectiveness of Amblyseius swirskii Against Aculops lycopersici,
The experiment was carried out in a multi-tunnel greenhouse located in Vicar (Almeria, Andalusia, Spain). This experiment was performed in a greenhouse comprising a total of 16 walk-in (experimental) cages of 5×3.5×4 m (l×w×h).
Two factors were evaluated, plant variety and predator, in a split plot design with four replicates. There were four main plots (group of four cages) of both plant varieties (plants comprising the modified Slmyc2 gene and Razymo), each divided into two subplots (experimental cages), each designated at random for each of the following treatments: 0 or 75 A. swirskii/plant.
Amblyseius swirskii was obtained from Koppert Biological Systems in bottles containing 50,000 mites of different stages and eggs mixed with a prey mite and a carrying material (SWIRSKI-MITE™). Aculops lycopersici (tomato russet mite, TRM) to infest the plants was obtained from a rearing colony maintained on tomato for several months before the starting of the experiment and originally collected on tomato plants from different locations within the region of Murcia (Spain)
Seeds of tomato cv. Razymo and plants comprising the modified Slmyc2 gene were sown into peat moss root cubes. When seedlings reached the five-leaves stage, they were transplanted into 25 l coco peat fibre bags placed inside the designated walk-in cage, at 10 seedlings per cage. Each tomato plant was inoculated with ca. 250 mobile stages of TRM two weeks after transplanting. Mites were counted under a stereomicroscope to select pieces of leaflets containing ca. 50 mites and five of these pieces were deposed onto a different leaf of each plant. All mites to infest plants were collected simultaneously and from the same part of the plant to assure homogeneity in age and sex-ratio. Predators were released at once in the designated cages four weeks after the tomato russet mite release. A. swirskii was distributed by sprinkling the carrying material over all plants at a rate of 75 predatory mites/plant. Quantity of mites per gram of substrate was used to calculate the amount to release.
Evaluations started just before the predator release and continued weekly thereafter until the end of the experiment. To evaluate the density of TRM, in each sampling, four plants were randomly selected in each walk-in cage and 3 leaf-disks (3.5 cm Ø) were taken from 3 different leaves (one disk per leaf) of each selected plant. One leaf was selected at random from the upper, one from the middle, and one form the bottom third of the plants. Leaf-disc samples were brought to the laboratory into a refrigerated cold-box and then the number of TRM (mobile stages) were counted using a stereoscopic microscope. Predator populations were assessed in situ by counting the number of predatory mites (mobile forms) present in the same above-mentioned leaves, but before picking the leaf-disks to count the number of TRM.
The results from this experiment are visualized in
Evaluation of the Effectiveness of Ambleyseius swirskii and Amblydromalus limonicus Against Bemisia tabaci (Whitefly) on Plants Comprising the Modified Slmyc2 Gene.
Experiments were carried out in a multi-tunnel greenhouse located in Vicar (Almeria, Andalusia, Spain). This experiment was performed in a greenhouse comprising a total of 16 walk-in (experimental) cages of 5×3.5×4 m (l×w×h).
During the summer and winter experiments, three treatments were compared in a complete randomized block design with 4 replicates in each experiment. The treatments were: 1) B. tabaci; 2) B. tabaci+A. swirskii and 3) B. tabaci+A. limonicus.
In both experiments, B. tabaci adults to infest the plants were collected from a mass-rearing colony maintained on tobacco plants. A. swirskii was provided by Koppert Biological Systems in bottles containing 50,000 predatory mites from different stages and eggs mixed with a prey mite and a carrying material (SWIRSKI-MITE™). A. limonicus was obtained from Koppert Biological Systems in bottles containing 10,000 mites of different stages and eggs mixed with a prey mite and a carrying material (LIMONICA™).
Seeds of tomato plants comprising the modified Slmyc2 gene were sown into peat moss root cubes. When seedlings reached the five-leaves stage, they were transplanted into 25 l coco peat fibre bags placed inside the designated walk-in cages, at 10 seedlings per cage. Adult pests were cooled briefly in a cold room at 8° C. for counting, then released into all cages at a rate of 10 adults/plant and 5 females/plant per week over three consecutive weeks for a total of 30 whitefly adults/plant. The first whitefly adults were released just after transplanting. This release schedule was used to simulate a gradual but heavy immigration of the pest into the greenhouse. For weekly infestations of all cages, adult whiteflies were simultaneously collected from the mass rearing and belonged to the same cohort to assure homogeneity in age and sex ratio. A. swirskii and A. limonicus were released one week after the first adult pests release by sprinkling the carrying material over all plants at a rate of 75 predatory mites/plant. Quantity of mites per gram of substrate was used to calculate the amount to release.
In the experiments, in each weekly sampling four plants were randomly selected in each experimental cage and three leaves were sampled from each of the four randomly selected plants. One leaf was selected at random from the upper, one from the middle, and one from the bottom third of the plant. On each leaf, whitefly nymphs and adults and the immature stages (larvae, protonymphs, and deutonymphs) and adults of phytoseiid mites were counted.
The results for the whitefly infestation experiments are shown in
Evaluation of the Effectiveness of Ambleyseius swirskii and Amblydromalus limonicus Against Frankliniella occidentalis (Thrips) Under Summer and Winter Conditions on Plants Comprising the Modified Slmyc2 Gene.
Experiments were carried out in a multi-tunnel greenhouse located in Vicar (Almeria, Andalusia, Spain). This experiment was performed in a greenhouse comprising a total of 16 walk-in (experimental) cages of 5×3.5×4 m (l×w×h).
During the summer and winter experiments, three treatments were compared in a complete randomized block design with 4 replicates in each experiment. The treatments were: 1) F. occidentalis; 2) F. occidentalis+A. swirskii and 3) F. occidentalis+A. limonicus.
In both experiments, F. occidentalis adults to infest the plants were obtained from a rearing colony maintained at Koppert Biological Systems on green bean pods. A. swirskii was provided by Koppert Biological Systems in bottles containing 50,000 predatory mites from different stages and eggs mixed with a prey mite and a carrying material (SWIRSKI-MITE™). A. limonicus was obtained from Koppert Biological Systems in bottles containing 10,000 mites of different stages and eggs mixed with a prey mite and a carrying material (LIMONICA™).
Procedures were the same for both the Summer and Winter experiments. Seeds of tomato plants comprising the modified Slmyc2 gene were sown into peat moss root cubes (Summer: 1 Jul. 2014; Winter: 22 Sep. 2014). When seedlings reached the five-leaves stage, they were transplanted into 25 l coco peat fibre bags placed inside the designated walk-in cages, at 10 seedlings per cage (Summer: 5 Aug. 2014; Winter: 28 Oct. 2014). Adult pests were cooled briefly in a cold room at 8° C. for counting, then released into all cages at a rate of 10 adults/plant and 5 females/plant per week over three consecutive weeks for a total of 15 thrips females/plant. The first thrips adults were released just after transplanting. This release schedule was used to simulate a gradual but heavy immigration of both pests into the greenhouse. Newly emerged adult thrips were used for the experiment, which were collected prior to each weekly release from a single cohort, to assure the homogeneity in age. Thrips females were mixed with an unknown number of males. A. swirskii and A. limonicus were released one week after the first adult pests release (Summer: 12 Aug. 2014; Winter: 4 Nov. 2014) by sprinkling the carrying material over all plants at a rate of 75 predatory mites/plant. Quantity of mites per gram of substrate was used to calculate the amount to release.
In the Summer and Winter experiments, in each weekly sampling four plants were randomly selected in each experimental cage and three leaves were sampled from each of the four randomly selected plants. One leaf was selected at random from the upper, one from the middle, and one from the bottom third of the plant. On each leaf, adults and mobile forms of thrips and adults of phytoseiid mites were counted.
The results for the thrips infestation experiments are shown in
The invention is further described by the following numbered paragraphs:
1. Modified Slmyc2 gene, comprising at least one modification as compared to the wild type sequence of SEQ ID No. 5, which modification leads to the reduction or absence of SlMYC2 protein activity, wherein the modified Slmyc2 gene is capable of conferring an aberrant glandular hair phenotype to a Solanum lycopersicum plant.
2. Modified Slmyc2 gene of paragraph 1, wherein the modification is selected from a modification that decreases the mRNA level of the Slmyc2 gene, a modification that decreases the level of the SlMYC2 protein and/or a modification that decreases the activity of the SlMYC2 protein, as compared to the wild type Slmyc2 gene of SEQ ID No. 5.
3. Modified Slmyc2 gene of paragraph 1 or 2, wherein the modification results in the presence of a premature stop codon within the coding sequence.
4. Modified Slmyc2 gene of paragraph 3, wherein the modification comprises a SNP on position 1477 of SEQ ID No. 2, in particular from nucleotide G (wild type) to T.
5. Modified Slmyc2 gene of any of the paragraphs 1 to 4, wherein the aberrant glandular hair phenotype is characterized by the reduction and preferably absence of terpenes, in particular α-pinene, myrcene, carene, α-phellandrene, β-phellandrene, p-cymene, limonene, δ-elemene, β-caryophyllene and/or α-humulene, and/or is characterized by deformed glandular hairs.
6. A Solanum lycopersicum plant comprising a modified Slmyc2 gene of any of the paragraphs 1 to 5.
7. A Solanum lycopersicum plant of paragraph 6, wherein the plant exhibits an aberrant glandular hair phenotype which allows for the establishment of predatory mites, in particular Amblyseius swirskii and/or Amblydromalus limonicus, on said Solanum lycopersicum plant.
8. A Solanum lycopersicum seed comprising the modified Slmyc2 gene of any of the paragraphs 1 to 5, wherein the plant that can be grown from the seed shows the aberrant glandular hair phenotype.
9. Progeny plant of a Solanum lycopersicum plant of paragraph 6 or 7, wherein the progeny plant comprises the modified Slmyc2 gene, of any of the paragraphs 1 to 5.
10. Propagation material capable of developing into and/or being derived from a Solanum lycopersicum plant of paragraph 6 or 7, wherein the propagation material comprises the modified Slmyc2 gene of any of the paragraphs 1 to 5 and wherein the propagation material is selected from a group consisting of microspores, pollen, ovaries, ovules, embryos, embryo sacs, egg cells, cuttings, roots, root tips, hypocotyls, cotyledons, stems, leaves, flowers, anthers, seeds, meristematic cells, protoplasts and cells, or a tissue culture thereof.
11. Use of a modified Slmyc2 gene of any of the paragraphs 1 to 5 for the development of a Solanum lycopersicum plant on which predatory mites, in particular Amblyseius swirskii and/or Amblydromalus limonicus can establish.
12. Use of paragraph 11, wherein the establishment of predatory mites, in particular Amblyseius swirskii and/or Amblydromalus limonicus, is allowed by an aberrant glandular hair phenotype.
13. Use of paragraph 12, wherein the aberrant glandular hair phenotype is characterized by the reduction and preferably absence of terpenes, in particular α-pinene, myrcene, carene, α-phellandrene, 3-phellandrene, p-cymene, limonene, δ-elemene, (3-caryophyllene and/or α-humulene, and/or is characterized by deformed glandular hairs.
14. Use of a Solanum lycopersicum plant of paragraph 6 or paragraph 7, for the cultivation and preservation of predatory mites, or a colony therefrom.
15. Method for obtaining a Solanum lycopersicum plant which exhibits an aberrant glandular hair phenotype, that allows for the establishment of mites, in particular the predatory mites Amblyseius swirskii and/or Amblydromalus limonicus, comprising reducing the endogenous level of SlMYC2 protein in the plant by mutation of the Slmyc2 gene of the plant.
16. Modified myc2 gene, which when expressed in a plant leads to the reduction and preferably absence of terpenes in said plant, and/or which is preferably capable of conferring an aberrant glandular hair phenotype to said plant, which gene comprises a modification that leads to reduction or absence of MYC2 protein activity, and wherein the modification is selected from a modification that decreases the mRNA level of the myc2 gene, a modification that decreases the level of the MYC2 protein and/or a modification that decreases the activity of the MYC2 protein, as compared to a non-modified wild type myc2 gene.
Having thus described in detail preferred embodiments of the present invention, it is to be understood that the invention defined by the above paragraphs is not to be limited to particular details set forth in the above description as many apparent variations thereof are possible without departing from the spirit or scope of the present invention.
| Number | Date | Country | Kind |
|---|---|---|---|
| 14181306.3 | Aug 2014 | EP | regional |
This application is a continuation-in-part application of international patent application Serial No. PCT/EP2015/068860 filed Aug. 17, 2015, which published as PCT Publication No. WO 2016/026816 on Feb. 25, 2016, which claims benefit of European patent application Serial No. EP 14181306.3 filed Aug. 18, 2014.
| Number | Date | Country | |
|---|---|---|---|
| Parent | PCT/EP2015/068860 | Aug 2015 | US |
| Child | 15412241 | US |
