Transcriptomic characterization of preoptic area in homeostatic sleep controls using single-nucleus RNA-sequencing

Information

  • Research Project
  • 10373184
  • ApplicationId
    10373184
  • Core Project Number
    R21NS122370
  • Full Project Number
    1R21NS122370-01A1
  • Serial Number
    122370
  • FOA Number
    PA-18-358
  • Sub Project Id
  • Project Start Date
    9/29/2021 - 3 years ago
  • Project End Date
    3/28/2023 - a year ago
  • Program Officer Name
    HE, JANET
  • Budget Start Date
    9/29/2021 - 3 years ago
  • Budget End Date
    3/28/2023 - a year ago
  • Fiscal Year
    2021
  • Support Year
    01
  • Suffix
    A1
  • Award Notice Date
    9/24/2021 - 3 years ago

Transcriptomic characterization of preoptic area in homeostatic sleep controls using single-nucleus RNA-sequencing

ABSTRACT Sleep homeostasis maintains the balance between sleep and wakefulness. Homeostatic sleep regulation is essential for cellular health and sleep disorders are implicated in many neurological disorders and age-related diseases. Understanding sleep homeostatic mechanisms is necessary for developing new therapies for sleep disorders. The preoptic area (POA) of the hypothalamus is essential for sleep homeostasis. Multiple nuclei of POA, including the ventrolateral preoptic area (VLPO) and the median preoptic nucleus (MnPO), contain sleep- active neurons that display increased activity during sleep compared with wake. The numbers of c-Fos positive neurons in VLPO and MnPO increase under high sleep pressure, e.g. after sleep deprivation and during recovery sleep following sleep deprivation. The complete makeup of the sleep-active neurons in POA is unknown. The galanin-expressing GABAergic neurons in VLPO are the most widely studied sleep-active neurons. However, not all c-Fos positive sleep-active neurons express galanin and not all galanin neurons are c-Fos positive during sleep at any given time in POA. Given the heterogeneous molecular and functional makeup of POA, it is important to comprehensively characterize the sleep-active neurons in POA at the individual cell level in an unbiased way. Towards this end, we will apply the recently advanced single-nucleus RNA sequencing (snRNA- seq) technique to POA and compare gene expression changes in individual cells between mice during recovery sleep following sleep deprivation (high sleep pressure) and mice after long periods of spontaneous sleep (low sleep pressure). Aim 1 will comprehensively map all neuronal groups that are activated under high sleep pressure based on a panel of activity-regulated genes. We expect to find that specific subtypes of galanin- expressing inhibitory neurons, as well as non-galanin expressing inhibitory neuronal groups that express other neuronal markers, are activated with high sleep pressure. Aim 2 will reveal the transcriptional changes regulated by homeostatic sleep pressure in all cell groups, including neurons and non-neuronal cells. For example, astrocytes play key roles in maintenance of sleep homeostasis. However, little is known about transcriptional regulation of astrocytes involved in sleep homeostasis in POA. Given the recent discovery of the molecular and regional specificity of astrocytes, we hypothesize that we will reveal region-specific and cell-specific changes in astrocytes. Aim 3 will use multiplex fluorescent in situ hybridization (RNAscope) to characterize the anatomical localization of the identified sleep-active neurons based on the molecular markers identified by snRNA-seq. This combination of molecular and spatial characterization of the sleep-active neurons in POA will enable future dissection and manipulation of the sleep circuit.

IC Name
NATIONAL INSTITUTE OF NEUROLOGICAL DISORDERS AND STROKE
  • Activity
    R21
  • Administering IC
    NS
  • Application Type
    1
  • Direct Cost Amount
    275000
  • Indirect Cost Amount
    171875
  • Total Cost
    446875
  • Sub Project Total Cost
  • ARRA Funded
    False
  • CFDA Code
    853
  • Ed Inst. Type
    SCHOOLS OF DENTISTRY/ORAL HYGN
  • Funding ICs
    NINDS:446875\
  • Funding Mechanism
    Non-SBIR/STTR RPGs
  • Study Section
    BNRS
  • Study Section Name
    Behavioral Neuroendocrinology, Neuroimmunology, Rhythms, and Sleep Study Section
  • Organization Name
    UNIVERSITY OF PENNSYLVANIA
  • Organization Department
    DENTISTRY
  • Organization DUNS
    042250712
  • Organization City
    PHILADELPHIA
  • Organization State
    PA
  • Organization Country
    UNITED STATES
  • Organization Zip Code
    191046205
  • Organization District
    UNITED STATES