Patent Grant
10597662
The present invention relates to a transformant, a process for production thereof, and a process for production of lactic acid. More specifically, the present invention relates to a transformant which is obtained by incorporating a D-lactate dehydrogenase gene derived from bacteria of the genus Pediococcus and a D-lactate dehydrogenase gene derived from bacteria of the genus Lactobacillus into Schizosaccharomyces pombe and in which some of the genes in a group of pyruvate decarboxylase-encoding genes have been deleted or inactivated, a process for production of the transformant, and a process for production of lactic acid in which the transformant is cultured or fermented in a culture solution or a fermentation solution and lactic acid is obtained from the culture solution or the fermentation solution.
Lactic acid is widely used for foods, medical purposes, and chemical raw materials of cosmetics and the like. Furthermore, polylactic acid obtained using lactic acid is drawing attention as a biodegradable plastic which is finally decomposed into carbon dioxide and water by microorganisms and the like. Therefore, there is a need to produce lactic acid with high productivity at low cost.
As a process for production of lactic acid, a biological process for producing lactic acid by fermenting sugar with lactic acid bacteria is known. However, because lactic acid bacteria have poor acid resistance, in order to obtain high productivity in the aforementioned process, the lactic acid produced through fermentation needs to be changed into a lactate by being neutralized by an alkali. In the production process in which neutralization is performed by an alkali, a step of reverting the lactate to lactic acid is necessary. Accordingly, the production process becomes complicated, and the production costs increase.
As a process for obtaining lactic acid without performing neutralization by an alkali, there is a process using a transformant obtained by introducing a lactate dehydrogenase-encoding gene into yeast. For example, PTL 1 discloses a case where lactic acid can be produced with high productivity without performing a neutralization step with an alkali by conducting lactic acid fermentation by using a transformant which is obtained by incorporating a lactate dehydrogenase gene derived from mammals such as human beings into Schizosaccharomyces pombe and in which some of the genes in a group of pyruvate decarboxylase-encoding genes of the Schizosaccharomyces pombe host have been deleted or inactivated. Furthermore, PTL 2 discloses a case where L-lactic acid is obtained by culturing a transformant which is obtained by introducing an L-lactate dehydrogenase gene of Lactobacillus plantarum into Saccharomyces cerevisiae which substantially does not produce ethanol when cultured in a culture medium.
[PTL 1] PCT International Publication No. WO2011/021629
[PTL 2] Published Japanese Translation No. 2007-512018 of the PCT International Publication for Patent Applications
The present invention aims to provide a transformant of Schizosaccharomyces pombe which can produce D-lactic acid with high productivity without requiring neutralization by an alkali, and to provide a process for production of the transformant.
The present invention also aims to provide a process for producing lactic acid with high productivity by using the transformant without performing a neutralization step with an alkali.
A transformant according to the present invention uses Schizosaccharomyces pombe as a host into which a D-lactate dehydrogenase gene derived from bacteria of the genus Pediococcus and a D-lactate dehydrogenase gene derived from bacteria of the genus Lactobacillus are incorporated, in which some of the genes in a group of pyruvate decarboxylase-encoding genes of the Schizosaccharomyces pombe host have been deleted or inactivated.
In the transformant according to the present invention, the bacteria of the genus Pediococcus are preferably Pediococcus acidilactici or Pediococcus pentosaceus, and the bacteria of the genus Lactobacillus are preferably Lactobacillus pentosus, Lactobacillus bulgaricus, or Lactobacillus brevis. In addition, in the transformant according to the present invention, the deleted or inactivated genes in the group of pyruvate decarboxylase-encoding genes are preferably PDC2 genes. Furthermore, the D-lactate dehydrogenase gene is preferably incorporated into a chromosome of the Schizosaccharomyces pombe.
A process for production of a transformant according to the present invention is a process for producing a transformant using Schizosaccharomyces pombe as a host into which a D-lactate dehydrogenase gene derived from bacteria of the genus Pediococcus and a D-lactate dehydrogenase gene derived from bacteria of the genus Lactobacillus are incorporated, in which some of the genes in a group of pyruvate decarboxylase-encoding genes of the Schizosaccharomyces pombe host have been deleted or inactivated. The process includes a step of obtaining a transformant by introducing an expression cassette into the host, in which the expression cassette consists of an expression cassette including a promoter and a terminator functioning in the Schizosaccharomyces pombe and a D-lactate dehydrogenase gene derived from bacteria of the genus Pediococcus and an expression cassette including a promoter and a terminator functioning in the Schizosaccharomyces pombe and a D-lactate dehydrogenase gene derived from bacteria of the genus Lactobacillus, or consists of an expression cassette including a promoter or a terminator functioning in the Schizosaccharomyces pombe, a D-lactate dehydrogenase gene derived from bacteria of the genus Pediococcus, and a D-lactate dehydrogenase gene derived from bacteria of the genus Lactobacillus, and a host, in which some of the genes in a group of pyruvate decarboxylase-encoding genes have been deleted or inactivated, is used as the aforementioned host, or some of the genes in a group of pyruvate decarboxylase-encoding genes of the transformant obtained as above are deleted or inactivated.
In the process for production of a transformant according to the present invention, the deleted or inactivated genes in a group of pyruvate decarboxylase-encoding genes are preferably PDC2 genes. In addition, the D-lactate dehydrogenase gene derived from bacteria of the genus Pediococcus and the D-lactate dehydrogenase gene derived from bacteria of the genus Lactobacillus are preferably introduced into a chromosome of the host.
In a process for production of lactic acid according to the present invention, the transformant is cultured or fermented in a culture solution or a fermentation solution, and D-lactic acid is obtained from the culture solution or the fermentation solution.
In the process for production of lactic acid according to the present invention, the culture or the fermentation is preferably performed using a culture solution or a fermentation solution containing glucose or sucrose at a concentration of 1% by mass to 50% by mass. Furthermore, it is preferable that the culture or the fermentation be further continued after the pH of the culture solution or the fermentation solution becomes equal to or less than 3.5 due to the D-lactic acid produced by the transformant. It is also preferable that the culture or the fermentation be continued without neutralizing the D-lactic acid in the culture solution or the fermentation solution that is produced by the transformant. Moreover, it is preferable that lactic acid be separated from the culture solution or the fermentation solution without neutralizing the D-lactic acid in the culture solution or the fermentation solution that is produced by the transformant. In addition, it is preferable that an initial bacterial cell concentration of the transformant in the culture solution or the fermentation solution be set to be 0.1 g/L to 50 g/L (expressed in terms of dry bacterial cells).
The transformant of Schizosaccharomyces pombe according to the present invention can produce D-lactic acid with high productivity without requiring neutralization by an alkali. Furthermore, the transformant is suitable for the production of D-lactic acid in the presence of high concentrations of sugars, particularly, glucose, fructose, sucrose, or maltose, and for high-density lactic acid fermentation.
The transformant can be simply obtained by the process for production of a transformant according to the present invention.
Furthermore, the process for production of lactic acid according to the present invention can produce D-lactic acid with high productivity without a neutralization step with an alkali being performed.
[Transformant]
The transformant according to the present invention is a transformant which uses Schizosaccharomyces pombe (hereinafter, referred to as “S. pombe” as well) as a host into which a D-lactate dehydrogenase gene derived from bacteria of the genus Pediococcus and a D-lactate dehydrogenase gene derived from bacteria of the genus Lactobacillus are incorporated, in which some of the genes in a group of pyruvate decarboxylase-encoding genes of the S. pombe host have been deleted or inactivated.
<S. pombe>
The S. pombe as a host is yeast (fission yeast) that belongs to the genus Schizosaccharomyces, and is a microorganism having particularly excellent acid resistance compared to other yeasts. It is known that the S. pombe is excellent at producing D-lactic acid in the presence of high-concentration glucose compared to other yeasts such as Saccharomyces cerevisiae, and is suitable for high-density fermentation (fermentation using a large amount of yeast) as well. Therefore, by using the transformant of the S. pombe, D-lactic acid can be produced with extremely high productivity.
The entire base sequence of choromosomes of the S. pombe has been published “Schizosaccharomyces pombe Gene DB (http://www.genedb.org/genedb/pombe)” in the database “Gene DB” of the Sanger Institute. The gene sequence data of the S. pombe described in the present specification can be obtained by searching the gene name or the aforementioned strain name in the database described above.
In addition, the S. pombe is available from public or private depository institutes such as American Type Culture Collection (ATCC, Manassas, Va., USA), National Collection of Yeast Cultures (NCYC, Norwich, United Kingdom), Nite Biological Resource Center (NBRC, Kisarazu-shi, Chiba), and Yeast Genetic Resource Center (YGRC, Graduate School of Science, Osaka University).
<Pyruvate Decarboxylase-encoding Gene>
The group of pyruvate decarboxylase-encoding genes (pyruvate decarboxylase genes, hereinafter, referred to as “PDC genes” as well) in the S. pombe consists of 4 kinds of genes, namely, a gene encoding pyruvate decarboxylase 1 (hereinafter, referred to as a “PDC1 gene”), a gene encoding pyruvate decarboxylase 2 (hereinafter, referred to as a “PDC2 gene”), a gene encoding pyruvate decarboxylase 3 (hereinafter, referred to as a “PDC3 gene”), and a gene encoding pyruvate decarboxylase 4 (hereinafter, referred to as a “PDC4 gene”). Among these, the PDC2 gene and the PDC4 gene are PDC genes that play a key functional role in the S. pombe. The strain name of each of the PDC genes is as follows.
PDC1 gene (Pdc1); SPAC13A11. 06
PDC2 gene (Pdc2); SPAC1F8. 07c
PDC3 gene (Pdc3); SPAC186. 09
PDC4 gene (Pdc4); SPAC3G9. 11c
The PDC gene sequence data can be obtained by searching the gene name or the strain name in the aforementioned S. pombe gene database.
In the wild-type S. pombe, glucose is metabolized into pyruvic acid by a glycolytic system, and by the pyruvate decarboxylase expressed from the PDC genes described above, the pyruvic acid is converted into acetaldehyde. Then, the acetaldehyde is converted into ethanol by alcohol dehydrogenase, and in this way, ethanol fermentation is performed. Because the wild-type S. pombe does not have a functioning lactate dehydrogenase gene (a gene encoding lactate dehydrogenase (LDH), hereinafter, referred to as an “LDH gene” as well), a route through which lactic acid is generated from pyruvic acid is not present in the S. pombe.
In contrast, LDH expressed from the incorporated LDH gene generates lactic acid by reducing pyruvic acid into lactic acid. Accordingly, simply by incorporating the LDH gene into the wild-type S. pombe so as to enable the production of lactic acid, both of the ethanol fermentation and the lactic acid fermentation are performed, and hence the lactic acid productivity is not sufficiently increased.
The transformant according to the present invention has a chromosome in which some of the genes in a group of pyruvate decarboxylase-encoding genes have been deleted or inactivated. Due to the deletion or inactivation of some of the genes in the group of PDC genes of the transformant, the ethanol fermentation efficiency of the transformant is reduced, and the amount of pyruvic acid to be converted into ethanol is decreased. Therefore, the lactic acid productivity is improved. Here, if the group of PDC genes is totally deleted or inactivated, ethanol fermentation is not performed at all, and the growth of the transformant is inhibited. Accordingly, only some of the genes in the group of PDC genes should be deleted or inactivated.
The PDC genes to be deleted or inactivated are particularly preferably the PDC2 genes. The PDC2 genes are PDC genes that particularly play a key functional role.
As described above, if all of the PDC genes are deleted or inactivated, the transformant does not perform ethanol fermentation, and thus the growth of the transformant is hindered. Therefore, the deletion or inactivation of the PDC genes should be performed by maintaining the ethanol fermentation ability necessary for the growth so as to obtain a sufficient amount of transformant and simultaneously by lowering the ethanol fermentation ability so as to improve the fermentation efficiency of lactic acid. In order to accomplish such a task, the inventors of the present invention conducted investigation. As a result, they found that if the PDC2 genes are deleted or inactivated, the PDC4 genes are activated to some extent, and enough ethanol fermentation ability for obtaining a sufficient amount of transformant and the production of lactic acid with high fermentation efficiency can be accomplished simultaneously.
The deletion or inactivation of the PDC genes can be performed by a known process. For example, by using a Latour method (described in the journal of Nucleic Acids Res., 2006, Vol. 34, p. e11, PCT International Publication No. WO2007/063919, and the like), the PDC genes can be deleted.
Furthermore, by introducing a mutation into a portion of the base sequence of the PDC genes by means of deletion, insertion, substitution, or addition, the PDC genes can be deleted. The mutation to be introduced may be only one of the deletion, insertion, substitution, and addition, or two or more mutations of these.
As the process for introducing the mutation into a portion of the PDC genes, a known process can be used.
For example, a mutation separation method using a mutagen (“Experimental Method of Yeast Molecular Genetics”, 1996, Gakkai Shuppan Center) and a random mutation method using a polymerase chain reaction (PCR) (the journal of PCR Methods Appl., 1992, Vol. 2, pp 28-33) can be used.
The PDC genes that carry the mutation introduced into a portion thereof may be genes expressing temperature-sensitive mutant-type pyruvate decarboxylase. The temperature-sensitive mutant-type pyruvate decarboxylase is an enzyme which shows activity equivalent to the activity of wild-type pyruvate decarboxylase at a certain culture temperature but undergoes the loss or deterioration of the activity at a temperature equal to or higher than a specific culture temperature.
A mutant strain expressing the mutant-type pyruvate decarboxylase can be obtained by being selected from genes whose growth rate is equivalent to the growth rate of the wild-type yeast under the conditions in which the activity is not limited by the temperature but is greatly reduced under specific temperature conditions in which the activity is limited.
<LDH Gene>
The transformant according to the present invention has an LDH gene. As described above, the S. pombe does not originally have the LDH gene. Therefore, by introducing the LDH gene of a living organism other than the S. pombe into the S. pombe through a genetic engineering process, the transformant is obtained.
The transformant according to the present invention has a D-lactate dehydrogenase (D-LDH) gene derived from bacteria of the genus Pediococcus and a D-LDH gene derived from bacteria of the genus Lactobacillus. The transformant according to the present invention does not have only one D-LDH gene but has at least two or more D-LDH genes. Therefore, the expression efficiency of the D-LDH gene can be improved, and in turn the production efficiency of D-lactic acid is improved. Furthermore, because of having the D-LDH genes derived from specific microorganisms in combination, the transformant can produce a larger amount of D-lactic acid.
The D-LDH gene derived from bacteria of the genus Pediococcus includes a D-LDH gene (wild type) that the bacteria of the genus Pediococcus originally have, a mutant gene which is obtained by the substitution, insertion, or deletion of one or several bases in the D-LDH gene and encodes a protein having the D-LDH activity, a mutant gene which is obtained by the substitution, insertion, or deletion of one or several amino acid bases in D-LDH encoded by the D-LDH gene and encodes a protein having the D-LDH activity, and a gene obtained by adding a base sequence encoding other peptides and the like to the upstream or the downstream side of the aforementioned gene. The same is applied to the D-LDH gene derived from bacteria of the genus Lactobacillus.
Specifically, examples of bacteria of the genus Pediococcus or D-LDH derived from the bacteria include D-LDH of Pediococcus acidilactici (PaDLDH) (GenBank accession number: CAA50275. 1) and D-LDH of Pediococcus pentosaceus (PpDLDH) (GenBank accession number: ABJ67935. 1). Examples of D-LDH derived from bacteria of the genus Lactobacillus include D-LDH of Lactobacillus pentosus (LpDLDH) (GenBank accession number: BAA14352. 1), D-LDH gene of Lactobacillus bulgaricus (LbDLDH) (GenBank accession number: CAA42781. 1), and D-LDH of Lactobacillus brevis (LbrDLDH) (GenBank accession number: AFR11459. 1). Herein, Genbank is the database of the National Center for Biotechnology Information (NCBI).
The transformant according to the present invention has at least one D-LDH gene derived from bacteria of the genus Pediococcus or at least one D-LDH gene derived from bacteria of the genus Lactobacillus. Alternatively, the transformant according to the present invention has at least one D-LDH gene derived from bacteria of the genus Pediococcus and at least one D-LDH gene derived from bacteria of the genus Lactobacillus. The transformant according to the present invention may have only one D-LDH gene derived from bacteria of the genus Pediococcus or two or more such D-LDH genes. In a case where the transformant has two or more such D-LDH genes, the genes may be either D-LDH genes derived from the homologues of bacteria of the genus Pediococcus or D-LDH genes derived from heterologous of bacteria of the genus Pediococcus. The same is applied to the D-LDH gene derived from bacteria of the genus Lactobacillus.
[Production of Transformant]
The transformant according to the present invention is obtained by a process wherein S. pombe in which some of the genes in a group of PDC genes have been deleted or inactivated is used as a host, and a D-LDH gene derived from bacteria of the genus Pediococcus and a D-LDH gene derived from bacteria of the genus Lactobacillus are introduced into the S. pombe by a genetic engineering process. In addition, it is possible to obtain the transformant according to the present invention by a process wherein S. pombe in which a group of PDC genes have not been deleted or inactivated is used as a host; a D-LDH gene derived from bacteria of the genus Pediococcus and a D-LDH gene derived from bacteria of the genus Lactobacillus are introduced into the S. pombe by a genetic engineering process so as to obtain a transformant; and then some of the genes in a group of PDC genes of the obtained transformant are deleted or inactivated. In examples which will be described later, an intended transformant is produced by the former process. However, by the latter process, a transformant almost equivalent to the above transformant can also be obtained. In any of the processes, the D-LDH gene derived from bacteria of the genus Pediococcus and the D-LDH gene derived from bacteria of the genus Lactobacillus may be introduced sequentially (in different orders) or introduced simultaneously.
Hereinafter, the process for production of a transformant will be described by illustrating the process wherein S. pombe in which some of the genes in a group of PDC genes have been deleted or inactivated is used as a host, and a D-LDH gene derived from bacteria of the genus Pediococcus and a D-LDH gene derived from bacteria of the genus Lactobacillus are introduced into the host by a genetic engineering process.
<Host>
The S. pombe used as a host may be a wild type or a mutant type in which specific genes have been deleted or inactivated according to the purpose. As the process for deleting or inactivating the specific genes, a known process can be used. Specifically, by using a Latour method (described in the journal of Nucleic Acids Res., 2006, Vol. 34, p. ell, PCT International Publication No. WO2007/063919, and the like), the genes are deleted. Furthermore, by a mutation separation method using a mutagen (“Experimental Method of Yeast Molecular Genetics”, 1996, Gakkai Shuppan Center), a random mutation method using a polymerase chain reaction (PCR) (the journal of PCR Methods Appl., 1992, Vol. 2, pp 28-33), and the like, a mutation is introduced into some of the genes, thereby inactivating the genes. The yeast host of the genus Schizosaccharomyces in which specific genes have been deleted or inactivated is described in, for example, PCT International Publication No. WO2002/101038 and PCT International Publication No. WO2007/015470.
The portion in which the specific genes are deleted or inactivated may be an open reading frame (ORF) portion or an expression control sequence portion. It is particularly preferable to use a deletion or inactivation process by a PCR-mediated homologous recombination method (the journal of Yeast, 1998, Vol. 14, pp 943-951) in which the ORF portion of a structural gene is substituted with a marker gene.
A transformant in which PDC genes have been deleted or inactivated can be preferably used as a host for producing the transformant according to the present invention. Furthermore, the S. pombe in which the PDC genes and specific genes other than the PDC genes have been deleted or inactivated can also be used as a host. By the deletion or inactivation of a protease gene and the like, the expression efficiency of heterologous proteins can be improved, and if a host obtained in this way is used as the host in the present invention, the improvement of the production efficiency of D-lactic acid can be expected.
As the S. pombe used as a host, it is preferable to use those having a marker for selecting the transformant. For example, it is preferable to use a host that essentially requires a specific nutritional component for growth due to the lack of certain genes. In a case where a transformant is prepared by transformation using a vector including a target gene sequence, if the lacked gene (complementary auxotrophic marker) is introduced in advance into the vector, the auxotrophy of the host disappears in the transformant. By the difference in auxotrophy between the host and the transformant, it is possible to make a differentiation between a host and a transformant and to obtain a transformant.
For example, by using S. pombe which becomes uracil auxotrophic due to the deletion or inactivation of an orotidine phosphate decarboxylase gene (ura4 gene) as a host, performing transformation using a vector having a ura4 gene (complementary auxotrophic marker), and then selecting a transformant in which uracil auxotrophy has disappeared, a transformant into which the vector is incorporated can be obtained. The missing gene that makes the host auxotrophic is not limited to the ura4 gene as long as it can be used for selecting the transformant, and may be an isopropylmalate dehydrogenase gene (leu1 gene) or the like.
In addition, the S. pombe in which a group of PDC genes have not been deleted or inactivated can be used as a host for producing a transformant. In this case, as the host, it is possible to use a host in which the aforementioned gene (an auxotrophic marker, a protease gene, or the like) other than the PDC genes has been deleted or inactivated.
By producing a transformant by using the host and then deleting or inactivating some of the genes in a group of PDC genes of the obtained transformant, the transformant according to the present invention can be obtained.
<Process for Introduction of D-LDH Gene>
As the process for introducing a D-LDH gene into a host by a genetic engineering process, a known process can be used. As the process in which S. pombe is used as a host and structural genes of heterologous proteins are introduced into the host, for example, it is possible to use the processes described in Japanese Unexamined Patent Application, First Publication No. H05-15380, PCT International Publication No. WO95/09914, Japanese Unexamined Patent Application, First Publication No. 1110-234375, Japanese Unexamined Patent Application, First Publication No. 2000-262284, Japanese Unexamined Patent Application, First Publication No. 2005-198612, PCT International Publication No. WO2011/021629, and the like.
<Expression Cassette>
An expression cassette is a combination of DNA necessary for expressing an intended protein, and includes a structural gene which encodes the intended protein and a promoter and a terminator which function in a host. An expression cassette used for production of the transformant according to the present invention includes at least either a D-LDH gene derived from bacteria of the genus Pediococcus or a D-LDH gene derived from bacteria of the genus Lactobacillus and a promoter and a terminator which function in the S. pombe. The expression cassette may include any one or more domains among a 5′-untranslated domain and a 3′-untranslated domain. Furthermore, the cassette may include the aforementioned complementary auxotrophic marker. A plurality of D-LDH genes may be present in a single cassette. The number of D-LDH genes in a single cassette is preferably 1 to 8, and more preferably 1 to 5. In a case where a plurality of D-LDH genes is included in a single cassette, the cassette may include two or more kinds of D-LDH genes. As the expression cassette, an expression cassette which includes one or plural D-LDH genes, a promoter, a terminator, a 5′-untranslated domain, a 3′-untranslated domain, and a complementary auxotrophic marker is preferable.
In producing the transformant according to the present invention, the D-LDH gene derived from bacteria of the genus Pediococcus and the D-LDH gene derived from bacteria of the genus Lactobacillus may be introduced into the host by different expression cassettes or by a single expression cassette. As the expression cassette including the D-LDH gene derived from bacteria of the genus Pediococcus and the D-LDH gene derived from bacteria of the genus Lactobacillus, for example, an expression cassette is preferable which includes a promoter, the D-LDH gene derived from bacteria of the genus Pediococcus, a cleavage sequence, a complementary auxotrophic marker (for example, a ura4 gene), the D-LDH gene derived from bacteria of the genus Lactobacillus, and a terminator in this order from the 5′ terminal side.
As the D-LDH gene derived from bacteria of the genus Pediococcus or the D-LDH gene derived from bacteria of the genus Lactobacillus that is included in the expression cassette, a gene encoded by the wild type may be used as it is. However, in order to increase the expression amount of the gene in the S. pombe used as a host, the gene sequence of the wild type may be modified into a codon used at a high frequency in the S. pombe.
The promoter and the terminator functioning in the S. pombe should be able to maintain the expression of LDH by functioning in the transformant even if D-lactic acid is accumulated by the transformant according to the present invention and hence the intracellular environment of the transformant becomes acidic (pH of equal to or less than 6). As the promoter functioning in the S. pombe, it is possible to use a promoter (preferably a promoter having high transcription initiation activity) the S. pombe originally has or a promoter (such as a promoter derived from a virus) the S. pombe does not originally have. Herein, two or more kinds of promoters may be present in a vector.
Examples of the promoter the S. pombe originally has include an alcohol dehydrogenase gene promoter, an nmt1 gene promoter involved in the thiamine metabolism, fructose-1,6-bisphosphatase gene promoter involved in the glucose metabolism, an invertase gene promoter involved in the catabolite repression (see PCT International Publication No. WO99/23223), a heat-shock protein gene promoter (see PCT International Publication No. WO2007/26617), and the like.
Examples of the promoter the S. pombe does not originally have include promoters derived from animal cell viruses, described in Japanese Unexamined Patent Application, First Publication No. H05-15380, Japanese Unexamined Patent Application, First Publication No. H07-163373, and Japanese Unexamined Patent Application, First Publication No. H10-234375. As such promoters, an hCMV promoter and an SV40 promoter are preferable.
As the terminator functioning in the S. pombe, it is possible to use a terminator the S. pombe originally has or a terminator the S. pombe does not originally have. Herein, two or more kinds of terminators may be present in a vector.
Examples of the terminator include terminators derived from human beings, described in Japanese Unexamined Patent Application, First Publication No. H05-15380, Japanese Unexamined Patent Application, First Publication No. H07-163373, and Japanese Unexamined Patent Application, First Publication No. H10-234375. As such terminators, terminators of human lipocortin I are preferable.
<Vector>
The transformant according to the present invention has, in a chromosome, an expression cassette which includes a D-LDH gene derived from bacteria of the genus Pediococcus and a D-LDH gene derived from bacteria of the genus Lactobacillus, or both of an expression cassette which includes a D-LDH gene derived from bacteria of the genus Pediococcus and an expression cassette which includes a D-LDH gene derived from bacteria of the genus Lactobacillus. Alternatively, the transformant according to the present invention has the aforementioned cassette as an extrachromosomal gene. Having the expression cassette in a chromosome means a state where the expression cassette is incorporated into one or more sites in a chromosome of the host cell. Having the cassette as an extrachromosomal gene means a state where the transformant has a plasmid including the expression cassette in a cell. The transformant having each expression cassette is obtained by causing transformation of the S. pombe as a host by using a vector including each expression cassette.
The vector including each expression cassette can be produced by incorporating the expression cassette into a vector having a cyclic DNA structure or a linear DNA structure. In a case where a transformant in which the expression cassette is retained as an extrachromosomal gene in the host cell is prepared, the vector is preferably a plasmid including a sequence to be replicated in the host cell, that is, an Autonomously Replicating Sequence (ARS). In contrast, in a case where a transformant in which the expression cassette is incorporated into a chromosome of the host cell is prepared, the vector is preferably a vector which has a linear DNA structure, does not have ARS, and is introduced into the host cell. For example, the vector may be a vector consisting of linear DNA or a vector having a cyclic DNA structure that has a restriction enzyme recognition sequence for cutting and opening the vector into linear DNA when being introduced into the host. In a case where the vector is a plasmid having ARS, a linear DNA structure can be established by deleting the ARS portion or by inactivating the function of ARS by cleaving the ARS portion, and then the plasmid can be introduced into the host.
The vector having each expression cassette preferably has a marker for selecting the transformant. Examples of the marker include an orotidine phosphate decarboxylase gene (ura4 gene) and an isopropylmalate dehydrogenase gene (leu1 gene) that are complementary auxotrophic markers.
Each D-LDH gene is preferably introduced into a chromosome of the S. pombe. By the introduction of the D-LDH gene into the chromosome, a transformant excellent in passage-maintaining stability is obtained. Furthermore, a plurality of D-LDH genes can be introduced into the chromosome. In the transformant according to the present invention, the number of D-LDH genes derived from bacteria of the genus Pediococcus that are incorporated into the chromosome is preferably 1 to 20 and particularly preferably 1 to 8. In addition, the number of D-LDH genes derived from bacteria of the genus Lactobacillus that are incorporated into the chromosome of the transformant is preferably 1 to 20 and particularly preferably 1 to 8.
As the process for introducing a D-LDH gene into a chromosome, a known process can be used. For example, by the process described in Japanese Unexamined Patent Application, First Publication No. 2000-262284, a plurality of D-LDH genes can be introduced into the chromosome. By the same process, a single D-LDH gene can be introduced into the chromosome. Furthermore, as will be described later, a single D-LDH gene or a plurality of D-LDH genes can be introduced into a plurality of sites of the chromosome.
As the process for introducing the D-LDH gene derived from bacteria of the genus Pediococcus or the D-LDH gene derived from bacteria of the genus Lactobacillus into the chromosome of the S. pombe, a process is preferable in which the D-LDH gene is introduced into the chromosome by a homologous recombination method by using a vector having an expression cassette which has each D-LDH gene and a recombination site.
The recombination site of the vector is a site having a base sequence that can cause homologous recombination with a target site of homologous recombination in a chromosome of the S. pombe. The target site is a site into which the expression cassette is incorporated in the chromosome of the S. pombe. The target site can be freely set by designing the base sequence of the recombination site of the vector such that the recombination site can cause homologous recombination with the target site.
The base sequence of the recombination site and the base sequence of the target site need to share identity of equal to or higher than 70%. Furthermore, in view of facilitating the occurrence of homologous recombination, the identity shared between the base sequence of the recombination site and the base sequence of the target site is preferably equal to or higher than 90%, and more preferably equal to or higher than 95%. By using the vector having the recombination site described above, the expression cassette can be incorporated into the target site through homologous recombination.
The length (number of bases) of the recombination site is preferably 20 bp to 2,000 bp. If the length of the recombination site is equal to or greater than 20 bp, homologous recombination easily occurs. If the length of the recombination site is equal to or less than 2,000 bp, it is easy to prevent a case where the vector becomes too long and thus the homologous recombination does not easily occur. The length of the recombination site is more preferably equal to or greater than 100 bp, and even more preferably equal to or greater than 200 bp. In addition, the length of the recombination site is more preferably equal to or less than 800 bp, and even more preferably equal to or less than 400 bp.
The vector may have other DNA domains in addition to the aforementioned expression cassette and recombination site. Examples of the DNA domains include a replication initiation domain called “ori” that is necessary for the replication in E. coli and an antibiotic resistance gene (a neomycin resistance gene or the like). These are genes generally required in a case where a vector is constructed using E. coli. Here, it is preferable that the replication initiation domain be removed when the vector is incorporated into the chromosome of the host as will be described later.
In a case were the D-LDH gene is incorporated into the chromosome, the vector preferably has a linear DNA structure when being introduced into the S. pombe cell. That is, in a case where the vector is a vector having a cyclic DNA structure such as plasmid DNA that is generally used, it is preferable that the vector be introduced into the S. pombe cell after being cut and opened to become linear DNA by a restriction enzyme.
In this case, the position in which the vector having a cyclic DNA structure is cut and opened is in the recombination site. As a result, in each of both ends of the vector cut and opened, the recombination site is partially present, and through the homologous recombination, the entirety of the vector is incorporated into the target site of the chromosome.
As long as a linear DNA structure can be established for the vector such that a portion of the recombination site is present in each of both ends thereof, the vector may be constructed by a process other than the process of cut-opening the vector having a cyclic DNA structure.
As the vector, for example, plasmids derived from E. coli, such as pBR 322, pBR 325, pUC 118, pUC 119, pUC 18, and pUC 19, can be suitably used.
In this case, it is preferable that a replication initiation domain called “ori” necessary for the replication in E. coli be removed from the plasmid vector used for homologous recombination of the chromosome of the S. pombe. In this way, when the vector is incorporated into the chromosome, the incorporation efficiency can be improved.
The process for construction of the vector from which the replication initiation domain has been removed is not particularly limited, but it is preferable to use the process described in Japanese Unexamined Patent Application, First Publication No. 2000-262284. That is, it is preferable to use a process of constructing in advance a precursor vector in which a replication initiation domain is inserted into a cleavage site in the recombination site such that the vector has the linear DNA structure described above and the replication initiation domain is cut off. By the process, a vector from which a replication initiation domain has been removed can be easily obtained.
Furthermore, it is also preferable to use a process in which a precursor vector having an expression cassette and a recombination site is constructed by using the expression vector described in Japanese Unexamined Patent Application, First
Publication No. H05-15380, Japanese Unexamined Patent Application, First Publication No. H07-163373, PCT International Publication No. WO96/23890, Japanese Unexamined Patent Application, First Publication No. H10-234375, and the like or using the construction process thereof, and a replication initiation domain is removed from the precursor vector by a general genetic engineering technique so as to obtain a vector used for homologous recombination.
<Target Site>
The target site into which the vector is incorporated may be present in only one site or two or more sites in the chromosome of the S. pombe. In a case where two or more target sites are present, the vector is incorporated into the two or more sites of the chromosome of the S. pombe. In a case where a plurality of D-LDH genes are included in a single expression cassette, a plurality of LDH genes can be incorporated into one target site. In addition, by using two or more kinds of vectors having recombination sites corresponding to each of the target sites, the expression cassette can be incorporated into two or more target sites. By this process, a plurality of LDH genes can be incorporated into the chromosome of the S. pombe. As a result, the expression amount of D-LDH can be increased, and the productivity of D-lactic acid can be improved. For example, by incorporating an expression cassette including a D-LDH gene derived from bacteria of the genus Pediococcus into a vector having a first target site, incorporating an expression cassette including a D-LDH gene derived from bacteria of the genus Lactobacillus into a vector having a second target site, and performing transformation by using the vectors and S. pombe in which some of the genes in a group of PDC genes have been deleted or inactivated as a host, the transformant according to the present invention is obtained.
In a case where an expression cassette is incorporated into one target site, for example, it is possible to use the target site shown in the process described in Japanese Unexamined Patent Application, First Publication No. 2000-262284. If the above process is used, it is also possible to incorporate vectors into different target sites by using two or more kinds of vectors having different recombination sites. However, the process is complicated for incorporating vectors into two or more sites of the chromosome.
As long as a plurality of portions present in a chromosome and having base sequences substantially the same as each other, can be used as target sites, and a vector can be incorporated into each of the plurality of target sites, the vector can be incorporated into two or more sites in the chromosome by using one kind of vector. The base sequences substantially the same as each other mean that the sequences share identity of equal to or higher than 90%. The identity shared between the target sites is preferably equal to or higher than 95%. The length of each of the base sequences substantially the same as each other is a length including the recombination site of the aforementioned vector, which is preferably equal to or greater than 1,000 bp. In a case where LDH genes are incorporated into a plurality of target sites in a dispersed state, even if the same number of D-LDH genes are incorporated into the target sites, a phenomenon in which the D-LDH genes are broken away all at once from the chromosome when the transformant grows occurs less than in a case where a plurality of D-LDH genes is incorporated into a single target site. Therefore, the passage-maintaining stability of the transformant is improved.
As the plurality of target sites present in the chromosome, transposon genes Tf2 are preferable. Tf2 is a transposon gene present in a total of 13 sites in each triple-strand (monoploid) chromosome of the S. pombe. The length (number of bases) thereof is known to be about 4,900 bp, and the base sequence identity shared between the genes thereof is known to be 99.7% (see the following documents).
Nathan J. Bowen et al, “Retrotransposons and Their Recognition of pol II Promoters: A Comprehensive Survey of the Transposable Elements from the Complete Genome Sequence of Schizosaccharomyces pombe”, Genome Res. 2003 13: 1984-1997
It is possible to incorporate a vector into only one of the Tf2s present in 13 sites in the chromosome. In this case, by incorporating a vector having two or more D-LDH genes, a transformant having two or more D-LDH genes can be obtained. Furthermore, by incorporating a vector into Tf2 in two or more sites, a transformant having two or more D-LDH genes can be obtained. In this case, by incorporating the vector having two or more D-LDH genes, a transformant having more D-LDH genes can be obtained.
If a vector is incorporated into all of the 13 Tf2s, too much burden may be imposed on the survival or growth of the transformant. Therefore, the vector is preferably incorporated into 8 or less of the 13 Tf2s, and more preferably incorporated into 5 or less Tf2s.
<Transformation Process>
As the transformation process, any of known transformation processes can be used. Examples of the transformation processes include the processes known in the related art, such as a lithium acetate method, an electroporation method, a spheroplast method, and a glass bead method, and the process described in Japanese Unexamined Patent Application, First Publication No. 2005-198612. Furthermore, commercially available yeast transformation kits may be used.
As the process for transforming the S. pombe host by a homologous recombination method, a known homologous recombination method can be used. As the transformation process at the time of producing the transformant according to the present invention, a process is preferable wherein S. pombe in which some of the genes in a group of PDC genes described above have been deleted or inactivated is used as a host, and an expression cassette is incorporated into the chromosome of the S. pombe through homologous recombination by using the vector described above. According to this process, the transformant according to the present invention can be simply produced.
At the time of producing the transformant, generally, after homologous recombination is performed, the obtained transformant is selected. As the selection process, for example, the following process can be used. By using a medium that can select the transformant by the aforementioned auxotrophic marker, screening is carried out, thereby selecting a plurality of transformants from the obtained colony. Then, each of the transformants is individually subjected to liquid culture. Thereafter, the expression amount of a heterologous protein (in the present invention, D-LDH derived from bacteria of the genus Pediococcus or D-LDH derived from bacteria of the genus Lactobacillus) in each culture solution is investigated, and transformants showing a greater expression amount of the heterologous protein are selected. Through a pulse field gel electrophoresis method, genomic analysis is performed on the selected transformants, and in this way, the number of vectors or expression cassettes incorporated into the chromosome is investigated.
The number of vectors incorporated into the chromosome can be adjusted to some extent by adjusting the incorporation conditions or the like. It is considered that the incorporation efficiency or the number of vectors incorporated may vary with the size (number of bases) or structure of the vector.
Generally, the greater the number of expression cassettes, the higher the expression efficiency of D-LDH, and presumably, this may lead to the increase in the production efficiency of D-lactic acid. Therefore, it is considered that by incorporating a plurality of D-LDH genes into the chromosome of the S. pombe, the expression amount of D-LDH can be increased, and the productivity of D-lactic acid can be improved. However, it is also considered that if the number of expression cassettes is too great, the burden imposed on the survival or growth of the cells may be increased, and in turn the production efficiency of D-lactic acid may be reduced. In contrast, by including a plurality of genes in a single expression cassette, it is possible to reduce the number of expression cassettes to be incorporated into the chromosome and to incorporate a large number of D-LDH genes into the chromosome. However, it is considered that if the size of the vector is increased, a probability that the vector will be incorporated into the chromosome may be reduced, the number of vectors to be incorporated may not be easily increased, and thus the transformant may not be easily obtained.
Therefore, the inventors of the present invention thought that even in a case where a relatively small number of expression cassettes having an appropriate size are incorporated into the chromosome, in order to obtain a S. pombe transformant having high D-lactic acid production efficiency, a foreign D-LDH gene, which is highly efficiently expressed in the S. pombe and results in high activity of the expressed D-LDH, needs to be selected and introduced into the chromosome. As a result of investigating D-LDH genes derived from various microorganisms, the inventors found that by incorporating a D-LDH gene derived from bacteria of the genus Pediococcus or a D-LDH gene derived from bacteria of the genus Lactobacillus into a S. pombe transformant in which some of the genes in a group of PDC genes have been deleted or inactivated, a transformant having extremely high D-lactic acid production efficiency can be obtained. In addition, surprisingly, it was found that in a case where both of the D-LDH gene derived from bacteria of the genus Pediococcus and the D-LDH gene derived from bacteria of the genus Lactobacillus are incorporated into the S. pombe transformant, a transformant having markedly higher D-lactic acid production efficiency is obtained, than in a case where D-LDH genes derived from other species of living organisms are incorporated into the S. pombe transformant in combination.
[Process for Production of Lactic Acid]
A process for production of lactic acid according to the present invention is a production process of lactic acid, in which the transformant according to the present invention is fermented in a fermentation solution, and D-lactic acid is obtained from the fermentation solution.
By fermenting the transformant according to the present invention in a sugar-containing fermentation solution, pyruvic acid obtained from the sugar through a glycolytic system is reduced by D-lactate dehydrogenase, and D-lactic acid is produced. By obtaining the D-lactic acid produced in the fermentation solution from the fermentation solution, lactic acid can be produced.
As the culture medium or the fermentation medium used for producing D-lactic acid, a known sugar-containing culture medium or fermentation medium for yeast can be used. Furthermore, the culture medium or the fermentation medium should contain a nitrogen source, inorganic salts, and the like the S. pombe can utilize and should enable the S. pombe to be efficiently cultured or fermented. As the culture medium or the fermentation medium, a natural medium or a synthetic medium may be used.
Examples of the sugar as a carbon source include sugars such as glucose, fructose, sucrose, and maltose. Examples of the nitrogen source include ammonia, an ammonium salt of an inorganic or organic acid, such as ammonium chloride or ammonium acetate, peptone, casamino acid, yeast extract, and the like. Examples of the inorganic salts include magnesium phosphate, magnesium sulfate, sodium chloride, and the like. It is also possible to further add a fermentation-accelerating factor such as proteolipid.
In the process for production of lactic acid according to the present invention, it is preferable to use a fermentation medium particularly containing glucose or sucrose as sugar. The concentration of glucose or sucrose in the fermentation solution (100% by mass) at the initial stage of fermentation is preferably equal to or greater than 1% by mass, more preferably 1% by mass to 50% by mass, and even more preferably 2% by mass to 16% by mass. After the glucose concentration or the sucrose concentration is reduced due to fermentation, it is preferable to continue the fermentation by adding glucose or a fermentation medium as necessary. At the final stage of fermentation, the glucose concentration or the like may become equal to or less than 1% by mass. In a case where continuous fermentation is performed in which fermented supernatant containing D-lactic acid is continuously collected from the fermentation tank, and at the same time the fermentation medium is supplied, it is preferable to maintain the glucose concentration or the like. If the glucose concentration is set to be equal to or greater than 2% by mass, the productivity of D-lactic acid is further improved. Furthermore, if the concentration of glucose or sucrose in the fermentation solution is set to be equal to or less than 16% by mass, the production efficiency of D-lactic acid is further improved.
In order to improve the productivity of D-lactic acid production, it is preferable to perform high-density fermentation. During the high-density fermentation, the initial bacterial cell concentration of the transformant in the fermentation solution, expressed in terms of the weight of dry bacterial cells, is preferably set to be 0.1 g/L to 50 g/L. The initial bacterial cell concentration of the transformant in the fermentation solution, expressed in terms of the weight of dry bacterial cells, is more preferably set to be 10 g/L to 40 g/L. If the initial bacterial cell concentration is set to be high, high productivity can be achieved within a short period of time. Furthermore, if the initial bacterial cell concentration is too high, a problem such as the aggregation of bacterial cells or the reduction of purification efficiency may occur.
The bacterial cell concentration described in examples and the like, which will be described later, is a value converted from an absorbance (OD660) of light having a wavelength of 660 nm measured by a visible-ultraviolet spectrometer V550 manufactured by JASCO Corporation. The value of 1 that equals OD660 at 660 nm corresponds to a dry weight of 0.2 g and a wet weight of 0.8 g of fission yeast in 1,000 mL of a culture solution.
For the culture or fermentation of the yeast, a known process can be used. For example, shake culture or shake fermentation or stirring culture or stirring fermentation can be used.
The culture temperature of the fermentation temperature is preferably 23° C. to 37° C., and the culture time or the fermentation time can be appropriately determined.
The culture or the fermentation may be batch culture or batch fermentation or may be continuous culture or continuous fermentation. For example, after the fermentation is performed by batch fermentation, by separating the bacterial cells from the fermentation solution, fermented supernatant containing D-lactic acid can be obtained. In addition, for the continuous fermentation method, for example, a process can be used in which a portion of the fermentation solution is taken out of the fermentation tank, fermented supernatant containing D-lactic acid is separated and collected from the taken fermentation solution while the bacterial cell-containing solution not being separated is returned to the fermentation tank, and glucose or a fermentation medium is newly added to the fermentation tank. By performing the continuous fermentation, the productivity of D-lactic acid is further improved.
In the process for production of lactic acid using the transformant according to the present invention, the S. pombe particularly excellent in acid resistance is used. Therefore, even if the pH is lowered (to about pH 2 to 4) due to the accumulation of lactic acid, D-lactic acid can be produced without performing neutralization. Accordingly, even after the pH of the fermentation solution becomes equal to or less than 3.5, it is possible to produce D-lactic acid by further continuing fermentation by means of continuous fermentation or the like. The pH at the final stage of the fermentation or the pH during the continuous fermentation is preferably 1.5 to 3.5, and particularly preferably 2.3 to 3.5. In order to improve the productivity of D-lactic acid, it is preferable to further continue fermentation after the pH of the fermentation solution becomes equal to or less than 3.5. The transformant according to the present invention is excellent in acid resistance. Consequently, it is possible to continue fermentation without neutralizing D-lactic acid in the fermentation solution that is produced by the transformant.
The D-lactic acid can be obtained from the fermentation solution by a known process. Particularly, it is preferable to obtain the D-lactic acid by separating it from the fermentation solution without neutralizing the D-lactic acid in the fermentation solution. For example, it is possible to use a process in which bacterial cells are separated by centrifugation from the fermentation solution after the end of the fermentation, and D-lactic acid is extracted using diethyl ether or ethyl acetate after the pH becomes equal to or less than 1; a process in which the fermentation solution is absorbed onto an ion-exchange resin and washed, and then D-lactic acid is eluted; a process in which impurities are removed using activated carbon; a process in which the fermentation solution is reacted with alcohol in the presence of an acid catalyst and then subjected to distillation; and a process in which D-lactic acid is separated using a separation membrane. Furthermore, in some cases, by neutralizing D-lactic acid in the fermentation solution and then separating lactate from the fermentation solution, D-lactic acid can be obtained. For example, by a process of converting D-lactic acid in the fermentation solution into a calcium salt or a lithium salt and crystallizing the neutralized salt, D-lactic acid can also be obtained.
The process for production of lactic acid according to the present invention described above uses the transformant using S. pombe particularly excellent in acid resistance as a host. Therefore, even if neutralization by an alkali is not performed, D-lactic acid can be simply produced with high productivity. In addition, because some of the genes in a group of PDC genes are deleted or inactivated, the ethanol fermentation efficiency is reduced. Accordingly, the sugar-based yield (a ratio of the amount of produced lactic acid to the amount of consumed sugar) of the D-lactic acid is improved. In the present invention, the sugar-based yield of the D-lactic acid can easily become equal to or greater than 50%. In some cases, the sugar-based yield of the D-lactic acid becomes equal to or greater than 70%. Furthermore, the process for production of lactic acid according to the present invention is also suitable for high-density fermentation that is performed in the presence of high-concentration glucose by using a high-concentration transformant.
Hereinafter, the present invention will be specifically described by illustrating examples and comparative examples, but the present invention is not limited to the following description. In the present examples, unless otherwise specified, “%” means “% by mass”. Furthermore, in the following examples, unless otherwise specified,
D-lactic acid will be simply referred to as “lactic acid” as well.
<Preparation of PDC2 Gene Deletion Strain of S. pombe>
A uracil auxotrophic ARC010 strain of S. pombe (genotype: h-, leu1-32, and ura4-D18) (see PCT International Publication No. WO2007/015470) was transformed according to a Latour method (described in the journal of Nucleic Acids Res., 2006, Vol. 34, p. ell, PCT International Publication No. WO2007/063919, and the like), thereby preparing a deletion strain (IGF543 strain) from which PDC 2 genes (strain name: SPAC1F8. 07c) were deleted.
For preparing a deletion fragment, total genomic DNA prepared from an ARC032 strain of S. pombe (genotype: h-) (see PCT International Publication No. WO2007/015470) by using DNeasy (manufactured by QUIAGEN) was used as a template, and 8 kinds of synthetic oligo DNA (manufactured by Operon Biotechnologies) having the base sequences shown in were used.
Specifically, by a PCR method using KOD-Dash (manufactured by TOYOBO CO., LTD.), a UP domain was prepared using UF and UR, an OL domain was prepared using OF and OR, and a DN domain was prepared using DF and DR. Then, by using these as templates, a full-length deletion fragment was prepared by the same PCR method using FF and FR respectively. At the time of preparing the full-length deletion fragment, 2 kinds of synthetic oligo DNA (manufactured by Operon Biotechnologies) having the base sequences shown in Table 2 were used, and the total genomic DNA prepared from the ARC032 strain in the same manner was used as a template. Furthermore, the fragment of a domain of a uracil auxotrophic marker ura4 of S. pombe (strain name listed in GeneDB: SPCC330.05c, orotidine-5′-phosphate decarboxylase gene) prepared by the same PCR method was also used in combination as a template.
The obtained PDC2 gene deletion strain of S. pombe (an IGF543 strain, h-, leu1-32, ura4-D18, and pdc2-D23) had a slow growth rate. Therefore, in order to restore the growth rate, the IGF543 strain was streaked on a YES plate (0.5% of yeast extract, 3% of glucose, and SP supplements) and cultured at 25° C., and the obtained colony was seeded into a YPD medium (1% of yeast extract, 2% of peptone, and 2% of glucose) and then cultured at 25° C. Then, by using the culture solution containing full-grown cells, a glycerol stock was prepared and stored at −80° C. By repeating the above operation until an appropriate growth rate was obtained, a strain whose growth rate was restored was prepared (named after IGF543).
<Preparation of LDH Gene Single-copy Introduction Strain of S. pombe>
S. pombe transformants were prepared (Table 13) into which a PaDLDH gene, a PpDLDH gene, an LbDLDH gene, an LbrDLDH gene, an LpDLDH gene, a D-LDH gene of Lactobacillus fermentum (LfDLDH gene) (GenBank accession number: BAG28106. 1.), a D-LDH gene of Lactobacillus casei (LcDLDH gene) (GenBank accession number: CAQ67405.1.), a D-LDH gene of Lactobacillus plantarum (LplDLDH gene) (GenBank accession number: CCC79301. 1.), a D-LDH gene of Staphylococcus aureus (SaDLDH gen) (GenBank accession number: BAB96309. 1.), or a D-LDH gene of Leuconostoc mesenteroides (LmDLDH gene) (GenBank accession number: ABJ62843. 1.) was introduced.
Specifically, according to the process of Bahler et al (the journal of Yeast, 1998, Vol. 14, pp 943-951), the IGF543 strain (gene deletion strain of S. pombe) prepared in Example 1 was transformed using a digest of a restriction enzyme BsiWI of a monodentate integrative recombinant vector pSLh-PaDLDH retaining a PaDLDH gene expression cassette, a monodentate integrative recombinant vector pSLh-PpDLDH retaining a PpDLDH gene expression cassette, a monodentate integrative recombinant vector pSLh-LbDLDH retaining an LbDLDH gene expression cassette, a monodentate integrative recombinant vector pSLh-LbrDLDH retaining an LbrDLDH gene expression cassette, a monodentate integrative recombinant vector pSLh-LpDLDH retaining an LpDLDH gene expression cassette, a monodentate integrative recombinant vector pSLh-LfDLDH retaining an LfDLDH gene expression cassette, a monodentate integrative recombinant vector pSLh-LcDLDH retaining an LcDLDH gene expression cassette, a monodentate integrative recombinant vector pSLh-LplDLDH retaining an LplDLDH gene expression cassette, a monodentate integrative recombinant vector pSE-SaDLDH retaining an SaDLDH gene expression cassette, or a monodentate integrative recombinant vector pSE-LmDLDH retaining an LmDLDH gene expression cassette.
The monodentate integrative recombinant vector pSE was prepared by the following process. That is, first, through ligation, a DNA fragment obtained by double digestion of an integrative vector pTL2M5 (see PTL 1) for fission yeast by restriction enzymes AfIIII and XbaI was connected to a ura4-ORF fragment amplified by PCR using S. pombe genome as a template and a primer set represented by SEQ ID NOS: 11 and 12, thereby obtaining a vector pTL2M5-ura4. Then, through ligation, a DNA fragment which was obtained by the digestion of pTL2M5-ura with a restriction enzyme Bst1107I was connected to a DNA fragment of SEQ ID NO: 13 including recognition sequences of totally synthetic restriction enzymes PmeI and PmaCI, thereby obtaining a pRU vector. Thereafter, through ligation, a fragment which was obtained by the digestion of the obtained pRU vector with a restriction enzyme PmeI was connected to a fragment obtained by the digestion of an ef1-DW fragment which was amplified by means of PCR using the S. pombe genome as a template and a primer set represented by SEQ ID NOS: 14 and 15 with a restriction enzyme PmeI, thereby obtaining a pRU-efd vector. Subsequently, through ligation, a fragment which was obtained by the digestion of the obtained pRU-efd vector with a restriction enzyme SpeI was connected to a fragment obtained by the digestion of an ef1-UP fragment which was amplified by means of PCR using the S. pombe genome as a template and a primer set represented by SEQ ID NOS: 16 and 17 with a restriction enzyme NheI, thereby preparing a pSE vector (7,180 bp,
A monodentate integrative recombinant vector pSLh was prepared by the following process. That is, first, by using a vector which was prepared by total synthesis of DNA and includes a sequence Y1 represented by SEQ ID NO: 19 as a template and a primer set represented by SEQ ID NOS: 20 and 21, a PCR reaction was performed, and the amplified PCR product was subjected to double digestion by using restriction enzymes KpnI and SnaBI, thereby obtaining a DNA fragment. Through ligation, the DNA fragment was connected to a fragment which was obtained by the digestion of a pSL1 vector with a restriction enzyme BsiWI and a DNA fragment obtained by the digestion of a PCR product which was obtained by a PCR reaction by using a pSL6 vector as a template and a primer set represented by SEQ ID NOS: 22 and 23 with a restriction enzyme BsiWI and then by the double-digestion of the obtained digest with restriction enzymes KpnI and SnaBI. In this way, pSLh (5,936 bp,
pSLh-PaDLDH was prepared by the following process. That is, first, by using total genomic DNA prepared by DNeasy (manufactured by QUIAGEN) from the culture of a Pediococcus acidilactici NBRC 3076 strain (obtained from NBRC (Biological Resource Center, NITE)) as a template and using two kinds of synthetic oligo DNA (PaDLDH-F and PaDLDH-R, manufactured by Operon Biotechnologies) described in Table 3, an ORF fragment of a PaDLDH gene was obtained by a PCR method using KOD-Dash (manufactured by TOYOBO CO., LTD.). The ORF fragment encoded PaDLDH (SEQ ID NO: 27).
By using an In-Fusion (registered trademark) HD Cloning Kit (manufactured by Clontech Laboratories, Inc.), the obtained amplified fragment was incorporated into pSLh, thereby preparing pSLh-PaDLDH. The In-Fusion method was performed according to the manual included in the kit. That is, the obtained PCR product was purified using a spin column, added to an In-Fusion reaction solution together with pSLh, and reacted for 15 minutes at 50° C.
pSLh-PpDLDH was prepared by the following process. That is, first, by using total genomic DNA prepared by DNeasy (manufactured by QUIAGEN) from the culture of a Pediococcus pentosaceus NBRC 107768 strain (obtained from NBRC) as a template and using two kinds of synthetic oligo DNA (PpDLDH-F and PpDLDH-R, manufactured by Operon Biotechnologies) described in Table 4, an ORF fragment of a PpDLDH gene was obtained by a PCR method using KOD-Dash (manufactured by TOYOBO CO., LTD.). The ORF fragment encoded PaDLDH (SEQ ID NO: 30).
The obtained amplified fragment was incorporated into pSLh by an In-Fusion method, thereby obtaining pSLh-PpDLDH. The In-Fusion method was performed in the same manner as used for preparing pSLh-PaDLDH.
pSLh-LbDLDH was prepared by the following process. That is, first, by using total genomic DNA prepared by DNeasy (manufactured by QUIAGEN) from the culture of a Lactobacillus bulgaricus NBRC 13953 strain (obtained from NBRC) as a template and using two kinds of synthetic oligo DNA (LbDLDH-F and LbDLDH-R, manufactured by Operon Biotechnologies) described in Table 5, an ORF fragment of an LbDLDH gene was obtained by a PCR method using KOD-Dash (manufactured by TOYOBO CO., LTD.). The ORF fragment encoded LbDLDH (SEQ ID NO: 33).
The obtained amplified fragment was incorporated into pSLh by an In-Fusion method, thereby preparing pSLh-LbDLDH. The In-Fusion method was performed in the same manner as used for preparing pSLh-PaDLDH.
pSLh-LbrDLDH was prepared by the following process. That is, first, by using total genomic DNA prepared by DNeasy (manufactured by QUIAGEN) from the culture of a Lactobacillus brevis NBRC 107147 strain (obtained from NBRC) as a template and using two kinds of synthetic oligo DNA (LbrDLDH-F and LbrDLDH-R, manufactured by Operon Biotechnologies) described in Table 6, an ORF fragment of an LbrDLDH gene was obtained by a PCR method using KOD-Dash (manufactured by TOYOBO CO., LTD.). The ORF fragment encoded LbrDLDH (SEQ ID NO: 36).
The obtained amplified fragment was incorporated into pSLh by an In-Fusion method, thereby preparing pSLh-LbDLDH. The In-Fusion method was performed in the same manner as used for preparing pSLh-PaDLDH.
pSLh-LpDLDH was prepared by the following process. That is, first, by using total genomic DNA prepared by DNeasy (manufactured by QUIAGEN) from the culture of a Lactobacillus pentosus NBRC 106467 strain (obtained from NBRC) as a template and using two kinds of synthetic oligo DNA (LpDLDH-F and LpDLDH-R, manufactured by Operon Biotechnologies) described in Table 7, an ORF fragment of an LpDLDH gene was obtained by a PCR method using KOD-Dash (manufactured by TOYOBO CO., LTD.). The ORF fragment encoded LpDLDH (SEQ ID NO: 39).
The obtained amplified fragment was incorporated into pSLh by an In-Fusion method, thereby preparing pSLh-LpDLDH. The In-Fusion method was performed in the same manner as used for preparing pSLh-PaDLDH.
pSLh-LfDLDH was prepared by the following process. That is, first, by using total genomic DNA prepared by DNeasy (manufactured by QUIAGEN) from the culture of a Lactobacillus fermentum NBRC 3956 strain (obtained from NBRC) as a template and using two kinds of synthetic oligo DNA (LfDLDH-F and LfDLDH-R, manufactured by Operon Biotechnologies) described in Table 8, an ORF fragment of an LfDLDH gene was obtained by a PCR method using KOD-Dash (manufactured by TOYOBO CO., LTD.). The ORF fragment encoded LfDLDH (SEQ ID NO: 42).
The obtained amplified fragment was incorporated into pSLh by an In-Fusion method, thereby preparing pSLh-LfDLDH. The In-Fusion method was performed in the same manner as used for preparing pSLh-PaDLDH.
pSLh-LplDLDH was prepared by the following process. That is, first, by using total genomic DNA prepared by DNeasy (manufactured by QUIAGEN) from the culture of a Lactobacillus plantarum NBRC 15891 strain (obtained from NBRC) as a template and using two kinds of synthetic oligo DNA (LplDLDH-F and LplDLDH-R, manufactured by Operon Biotechnologies) described in Table 9, an ORF fragment of an LplDLDH gene was obtained by a PCR method using KOD-Dash (manufactured by TOYOBO CO., LTD.). The ORF fragment encoded LplDLDH (SEQ ID NO: 45).
The obtained amplified fragment was incorporated into pSLh by an In-Fusion method, thereby preparing pSLh-LplDLDH. The In-Fusion method was performed in the same manner as used for preparing pSLh-PaDLDH.
pSLh-LcDLDH was prepared by the following process. That is, first, by using total genomic DNA prepared by DNeasy (manufactured by QUIAGEN) from the culture of a Lactobacillus casei NBRC 15883 strain (obtained from NBRC) as a template and using two kinds of synthetic oligo DNA (LcDLDH-F and LcDLDH-R, manufactured by Operon Biotechnologies) described in Table 10, an ORF fragment of an LcDLDH gene was obtained by a PCR method using KOD-Dash (manufactured by TOYOBO CO., LTD.). The ORF fragment encoded LcDLDH (SEQ ID NO: 48).
The obtained amplified fragment was incorporated into pSLh by an In-Fusion method, thereby preparing pSLh-LcDLDH. The In-Fusion method was performed in the same manner as used for preparing pSLh-PaDLDH.
pSE-SaDLDH was prepared by the following process. That is, first, by using total genomic DNA prepared by DNeasy (manufactured by QUIAGEN) from the culture of a Staphylococcus aureus NBRC 102135 strain (obtained from NBRC) as a template and using two kinds of synthetic oligo DNA (SaDLDH-F and SaDLDH-R, manufactured by Operon Biotechnologies) described in Table 11, an ORF fragment of an SaDLDH gene was obtained by a PCR method using KOD-Dash (manufactured by TOYOBO CO., LTD.). The ORF fragment encoded SaDLDH (SEQ ID NO: 51).
The obtained amplified fragment was incorporated into pSE by an In-Fusion method, thereby preparing pSE-SaDLDH. The In-Fusion method was performed in the same manner as used for preparing pSLh-PaDLDH.
pSE-LmDLDH was prepared by the following process. That is, first, by using total genomic DNA prepared by DNeasy (manufactured by QUIAGEN) from the culture of a Leuconostoc mesenteroides NBRC 100496 strain (obtained from NBRC) as a template and using two kinds of synthetic oligo DNA (LmDLDH-F and LmDLDH-R, manufactured by Operon Biotechnologies) described in Table 12, an ORF fragment of an LmDLDH gene was obtained by a PCR method using KOD-Dash (manufactured by TOYOBO CO., LTD.). The ORF fragment encoded LmDLDH (SEQ ID NO: 54).
The obtained amplified fragment was incorporated into pSE by an In-Fusion method, thereby preparing pSE-LmDLDH. The In-Fusion method was performed in the same manner as used for preparing pSLh-PaDLDH.
<Fermentation Test>
A YPD6 liquid medium (1% of yeast extract, 2% of peptone, and 6% of glucose) was inoculated with each of the obtained transformants, and the cells were cultured for 24 hours under the conditions of a temperature of 32° C. and a shaking rate of 110 rpm.
After the end of the culture, the bacterial cells were collected, 4.5 mL of a 11.1% aqueous glucose solution was inoculated with the bacterial cells such that the initial bacterial cell concentration became 36 g (expressed in terms of dry bacterial cells)/L, followed by fermentation for 3 or 7 hours under the conditions of a temperature of 32° C. and a shaking rate of 110 rpm. After the end of the fermentation, the concentration (g/L) of each of glucose, ethanol, and lactic acid in the fermentation solution was measured. Table 14 shows the measurement results, a lactic acid production rate (g/(L·h)), a sugar-based yield (%) of lactic acid, a dry bacterial cell concentration (g/L) after the end of fermentation, and lactic acid production rate (g/(g·h)) per dry bacterial cells that were calculated from the measurement results, and the fermentation time.
As a result, it was confirmed that the ASP4550 strain into which the PaDLDH gene as a D-LDH gene derived from bacteria of the genus Pediococcus was introduced, the ASP4552 strain into which the PpDLDH gene was introduced, the ASP4533 strain into which the LbDLDH gene as a D-LDH gene derived from bacteria of the genus Lactobacillus was introduced, the ASP4535 strain into which the LbrDLDH gene was introduced, the ASP4540 strain into which the LfDLDH gene was introduced, the ASP4541 strain into which the LpDLDH gene was introduced, the ASP4537 strain into which the LcDLDH gene was introduced, and the ASP4545 strain into which the LplDLDH gene was introduced produced lactic acid. Particularly, the ASP4550 strain, the ASP4537 strain, the ASP4540 strain, and the ASP4533 strain had a sugar-based yield of equal to or greater than 55%, showing extremely high lactic acid productivity. In contrast, the ASP3462 strain into which the LmDLDH gene was introduced and the ASP3466 strain into which the SaDLDH gene was introduced were not confirmed to produce lactic acid.
<Preparation of D-LDH Gene Double-copy Introduction Strain>
D-LDH genes derived from homologous or heterologous living organisms were introduced into two sites in the chromosome of the IGF543 strain prepared in Example 1, thereby preparing transformants. The lactic acid production ability of each of the transformants was investigated. A strain in which uracil auxotrophy and leucine auxotrophy were restored and into which two copies of PaDLDH gene were introduced was named an ASP4707 strain; a strain into which one copy of PaDLDH gene and one copy of LpDLDH gene were introduced was named an ASP4156 strain; a strain into which one copy of PaDLDH gene and one copy of LbDLDH gene were introduced was named an ASP4703 strain; a strain into which one copy of PaDLDH gene and one copy of LbrDLDH gene were introduced was named an ASP4704 strain; a strain into which one copy of PaDLDH gene and one copy of PpDLDH gene were introduced was named an ASP4708 strain; and a strain into which one copy of LbDLDH gene and one copy of LpDLDH gene were introduced was named an ASP4752 strain (Table 15).
Specifically, first, according to the process of Bahler et al (the journal of Yeast, 1998, Vol. 14, pp 943-951), the IGF543 strain (PDC2 gene deletion strain of S. pombe) prepared in Example 1 was transformed using a digest of a restriction enzyme BsiWI of a monodentate integrative recombinant vector pSE-PaDLDH retaining a PaDLDH gene expression cassette or a monodentate integrative recombinant vector pSE-LpDLDH retaining an LpDLDH gene expression cassette. In this way, an LDH gene single-copy introduction strain of S. pombe (ASP3472 strain) into which one copy of PaDLDH gene was introduced or an LDH gene single-copy introduction strain of S. pombe (ASP3468 strain) into which one copy of LpDLDH gene was introduced was prepared.
pSE-PaDLDH was prepared by the following process. That is, by using pSLh-PaDLDH prepared in Example 2, an expression cassette (hCMV promoter/PaDLDH-ORF/LPI terminator) was cut out by double digestion using restriction enzymes SpeI and Bst1107I, and pSE was introduced thereinto, thereby preparing pSE-PaDLDH.
Likewise, by using pSLh-LpDLDH prepared in Example 2, an expression cassette (hCMV promoter/LpDLDH-ORF/LPI terminator) was cut out by double digestion using restriction enzymes SpeI and BstI107I, and pSE was introduced thereinto, thereby preparing pSE-LpDLDH.
Each of the obtained LDH gene single-copy introduction strains of S. pombe was treated with 5-fluoroorotic acid (FOA) so as to remove the ura4 gene. Then, according to the process of Okazaki et al (the journal of Nucleic Acids Res., 1990, Vol. 18, pp 6485-6489), the strains were transformed using the monodentate integrative recombinant vector pSLh-PaDLDH retaining the PaDLDH gene expression cassette, the monodentate integrative recombinant vector pSLh-PpDLDH retaining the PpDLDH gene expression cassette, the monodentate integrative recombinant vector pSLh-LpDLDH retaining the LpDLDH gene expression cassette, the monodentate integrative recombinant vector pSLh-LbDLDH retaining the LbDLDH gene expression cassette, the monodentate integrative recombinant vector pSLh-LbrDLDH retaining the LbrDLDH gene expression cassette, or the monodentate integrative recombinant vector pSLh-LfDLDH retaining the LpDLDH gene expression cassette that was prepared in Example 2. In this way, D-LDH gene double-copy introduction strains of S. pombe were prepared into which one more copy of the PaDLDH gene, the PpDLDH gene, the LpDLDH gene, the LbDLDH gene, the LbrDLDH gene, or the LfDLDH gene controlled by the hCMV promoter was introduced into the vicinity of the position of Leu1.
Each of the obtained LDH gene double-copy introduction strains of S. pombe was treated with FOA so as to remove the ura4 gene, and then transformed using a leu1 gene fragment (SEQ ID NO: 55) and a ura4 gene fragment (SEQ ID NO: 56), thereby preparing strains in which uracil auxotrophy and leucine auxotrophy were restored.
<Fermentation Test>
A YPD6 liquid medium was inoculated with each of the obtained LDH gene double-copy introduction strains of S. pombe in the same manner as in Example 2, the cells were cultured, and the collected bacterial cells were fermented in a 11.1% aqueous glucose solution. After the end of the fermentation, the concentration (g/L) of each of glucose, ethanol, and lactic acid in the fermentation solution was measured. Furthermore, the optical purity of the lactic acid was measured by separating optical isomers by using a ligand exchange-type column. From the peak area of each of the optical isomers, the optical purity was determined by being calculated by the following equation.
[Optical purity (% ee)]=([D isomer]−[L isomer])/([D isomer]+[L isomer])×100 Equation:
([D isomer]: peak area of D-lactic acid, [L isomer]: peak area of L-lactic acid)
Table 15 shows the fermentation time, the measurement results, and a sugar-based yield (%) of D-lactic acid and an optical purity (% ee) of D-lactic acid that were calculated from the measurement results. As control, the PaDLDH gene single-copy introduction strain (ASP3472 strain) treated with FOA was subjected to the fermentation test in the same manner.
The sugar-based yield of the ASP4707 strain and the ASP4708 strain into which 2 copies of D-LDH gene derived from bacteria of the genus Pediococcus were introduced did not reach 70%, and the lactic acid production ability of these strains was not improved much compared to the lactic acid production ability of the ASP3472 strain into which only 1 copy of D-LDH gene was introduced. Furthermore, although 2 copies of D-LDH gene derived from bacteria of the genus Lactobacillus were introduced into the ASP4752 strain, the sugar-based yield was lower in this strain than in the ASP3472 strain which was a single-copy introduction strain. In contrast, in all of the ASP4156 strain, the ASP4703 strain, and the ASP4704 strain into which the D-LDH gene derived from bacteria of the genus Pediococcus and the D-LDH gene derived from bacteria of the genus Lactobacillus were introduced in combination, the sugar-based yield was equal to or greater than 75% which was markedly higher than the sugar-based yield of the ASP3472 strain. From these results, it was understood that in a case where the D-LDH gene derived from bacteria of the genus Pediococcus and the D-LDH gene derived from bacteria of the genus Lactobacillus are introduced into S. pombe in combination, a transformant having a markedly higher lactic acid production ability can be obtained, compared to the cases where the D-LDH genes are combined in other ways.
<Fed-batch Culture of LpDLDHgene/PaDLDH Gene Introduction Strain>
5 mL of a YES medium (pH 4.5) was inoculated with the ASP4156 strain (an LpDLDH gene/PaD-LDH gene introduction strain), and the cells were cultured for 24 hours at 32° C. in a test tube (preculture 1). Furthermore, 200 mL of a YES medium (pH 4.5) was inoculated with 4 mL of the culture solution obtained by the preculture 1, and the cells were cultured for 30 hours at 32° C. in a shake-flask having a volume of 1 L (preculture 2).
Then, by using a jar fermenter having a volume of 5 L, 200 mL of the culture solution obtained by the preculture 2 was added to 1,800 mL of an initial medium (adjusted to have pH 4.5 by using a 1N aqueous sulfuric acid solution) to which an appropriate amount of trace elements and vitamins were added according to the composition shown in Table 16, and culture was started at 30° C. Herein, the concentration of each component in Table 16 signifies the concentration by volume after the inoculation of the preculture 2. 39 hours after the beginning of the culture, by using a feed medium (adjusted to have pH 4.5 by using a 1 N aqueous sulfuric acid solution) to which an appropriate amount of trace elements and vitamins were added according to the composition shown in Table 17, feeding was started. 117 hours after the beginning of culture, the culture was ended. During the culture, the lower limit of the pH was controlled and kept at 4.5 by adding 12.5% aqueous ammonia.
<Continuous Fermentation of LpDLDH Gene/PaDLDH Gene Introduction Strain>
From the culture solution obtained after the end of the fed-batch culture, bacterial cells were separated by centrifugation treatment. Then, an initial medium, to which an appropriate amount of trace elements and vitamins were added according to the composition shown in Table 18, was inoculated with the bacterial cells such that the initial bacterial cell concentration became 36 g (expressed in terms of dry bacterial cells)/L (OD660=180), thereby obtaining a fermentation solution. 500 mL of the fermentation solution was moved into a jar fermenter having a volume of 1 L connected to a cross flow-type precision filtration membrane. Thereafter, the fermentation solution was circulated through a pathway along which it passes through the precision filtration membrane from the jar fermenter and returned to the jar fermenter. Subsequently, continuous fermentation in which a fermentation medium was supplied at a constant flow rate and the membrane filtrate was extracted was performed for 163 hours at 28° C. At this time, a dilution rate was set to be 0.066 (1/h). During the continuous fermentation, a precision filtration membrane with micropores having a diameter smaller than the size of the bacterial cells was used. Accordingly, the bacterial cells were caused to flow back to the tank such that they were recycled during the 163 hours of the continuous fermentation. During the continuous fermentation, the pH of the fermentation solution was reduced to 2.3 without performing pH neutralization using an alkali.
At a point in time when the continuous fermentation was ended, the optical purity of the lactic acid in the fermentation solution was measured in the same manner as in Example 3 by separating optical isomers by using a ligand exchange-type column. As a result, it was confirmed that the optical purity of D-lactic acid was 99.28% ee.
<Preparation of PaDLDH Gene Introduction Strain (ASP4878) in which Ura4 Reversion is Induced>
By using a DNA fragment obtained by the digestion of pSE with a restriction enzyme BsiWI, the ASP4550 strain into which PaDLDH was introduced was transformed, and the obtained transformant was named ASP4878.
<Fed-batch Culture of PaDLDH Gene Introduction Strain>
5 mL of a YES medium (pH 4.5) was inoculated with the ASP4878 strain (an ura4 reversion PaDLDH gene introduction strain), and the cells were cultured for 24 hours at 32° C. in a test tube (preculture 1). Furthermore, 200 mL of a YES medium (pH 4.5) was inoculated with 4 mL of the culture solution obtained by the preculture 1, and the cells were cultured for 24 hours at 32° C. in a shake-flask having a volume of 1 L (preculture 2).
Then, by using the same initial medium and feed medium as in Example 4 and using an alkali for pH control, fed-batch culture was performed. By using a jar fermenter having a volume of 5 L, 200 mL of the culture solution obtained by the preculture 2 was added to 1,800 mL of the initial medium, and culture was started at 30° C. 24 hours after the beginning of the culture, feeding was started using the feed medium. 71 hours after the beginning of the culture, the culture was ended. During the culture, the lower limit of the pH was kept at 4.5. The bacterial cell concentration at a point in time when the fed-batch culture was ended was 38.7 g (expressed in terms of dry bacterial cell)/L (OD660 196).
<Continuous Fermentation of PaDLDH Gene Introduction Strain>
500 mL of the culture solution after the end of the fed-batch culture was moved into a jar fermenter having a volume of 1 L, and circulated by being passed through a cross flow-type precision filtration membrane in the same manner as in Example 4. Then, by performing the supply of a fermentation medium at a constant flow rate and the extraction of the membrane filtrate under the same conditions as in Example 4, continuous fermentation was performed for 166 hours. Similarly to Example 4, during the continuous fermentation, the pH of the fermentation solution was reduced to 2.5 without performing the pH neutralization using an alkali.
<Fed-batch Culture of LpDLDH Gene/PaDLDH Gene Introduction Strain (2)>
5 mL of a YES medium (pH 4.5) was inoculated with the ASP4156 strain (an LpD-LDH gene/PaD-LDH gene introduction strain), and the cells were cultured for 24 hours at 32° C. in a test tube (preculture 1). Furthermore, 120 mL of a YES medium (pH 4.5) was inoculated with 2.4 mL of the culture solution obtained by the preculture 1, and the cells were cultured for 30 hours at 32° C. by using a shake-flask having a volume of 500 mL (preculture 2).
Then, by using the same initial medium and feed medium as in Example 4 and using an alkali for pH control, fed-batch culture was performed. By using a jar fermenter having a volume of 3 L, 120 mL of the culture solution obtained by the preculture 2 was added to 1,080 mL of the initial medium, and culture was started at 30° C. 39 hours after the beginning of the culture, feeding was started using the feed medium. 134 hours after the beginning of the culture, the culture was ended. During the culture, the lower limit of the pH was kept at 4.5. The bacterial cell concentration at a point in time when the fed-batch culture was ended was 28.7 g (expressed in terms of dry bacterial cells)/L (OD660=145).
<Continuous Fermentation of LpDLDH Gene/PaDLDH Gene Introduction Strain (2)>
625 mL of the culture solution after the end of the fed-batch culture was moved into a jar fermenter having a volume of 1 L, and circulated by being passed through a cross flow-type precision filtration membrane in the same manner as in Example 4. In order to increase the bacterial cell concentration, 125 mL of membrane filtrate was extracted. Then, by performing the supply of a fermentation medium at a constant flow rate and the extraction of the membrane filtrate under the same conditions as in Example 4, continuous fermentation was performed for 168 hours. Similarly to Example 4, during the continuous fermentation, the pH of the fermentation solution was reduced to 2.3 without performing the pH neutralization using an alkali.
The results of the continuous fermentation (2) of the ASP4156 strain of Example 6 were compared with the results of the continuous fermentation of the ASP4878 strain of Example 5 so as to investigate the temporal variation in the concentration (g/L) of each of glucose, ethanol, and lactic acid in the fermentation solution. The results are shown in
In the ASP4156 strain into which two copies of D-LDH gene were introduced, the lactic acid production rate at a point in time when the fermentation was ended (168 hours of continuous fermentation) was 5.5 g/(L·h), the sugar-based yield of lactic acid was 69%, and the proportion of viable bacterial cells was 58%. In contrast, in the ASP4878 strain into which one copy of D-LDH gene was introduced, the lactic acid production rate at a point in time when the fermentation was ended (166 hours of continuous fermentation) was 2.4 g/(L·h), the sugar-based yield of lactic acid was 54%, and the proportion of viable bacterial cells was 25%. In the ASP4156 strain, the concentration of D-lactic acid was not reduced during the continuous fermentation. However, in the ASP4878 strain, the concentration of D-lactic acid tended to start to be reduced 47 hours after the beginning of the fermentation. Furthermore, the sugar-based yield of lactic acid in the ASP4878 strain was lower by not less than 10% than in the ASP4156 strain, and the proportion of viable bacterial cells tended to be markedly reduced in the ASP4878 strain.
Hitherto, the present invention has been specifically described with reference to specific embodiments. However, as is evident to those in the related art, the present invention can be altered or modified in various ways without departing from the idea and scope of the present invention.
The present application is based on Japanese Patent Application No. 2013-242236, filed Nov. 22, 2013, the content of which is incorporated herein by reference.
| Number | Date | Country | Kind |
|---|---|---|---|
| 2013-242236 | Nov 2013 | JP | national |
| Filing Document | Filing Date | Country | Kind |
|---|---|---|---|
| PCT/JP2014/080982 | 11/21/2014 | WO | 00 |
| Publishing Document | Publishing Date | Country | Kind |
|---|---|---|---|
| WO2015/076393 | 5/28/2015 | WO | A |
| Number | Name | Date | Kind |
|---|---|---|---|
| 9284561 | Hara | Mar 2016 | B2 |
| 9428777 | Hara | Aug 2016 | B2 |
| 20050112737 | Liu | May 2005 | A1 |
| 20070031950 | Winkler | Feb 2007 | A1 |
| 20110136192 | Paul | Jun 2011 | A1 |
| 20120214214 | Hara | Aug 2012 | A1 |
| Number | Date | Country |
|---|---|---|
| 2003505065 | Feb 2003 | JP |
| 2003274958 | Sep 2003 | JP |
| 2003535583 | Dec 2003 | JP |
| 2005102625 | Apr 2005 | JP |
| 2007512018 | May 2007 | JP |
| 2007530007 | Nov 2007 | JP |
| 2008092862 | Apr 2008 | JP |
| 2009537144 | Oct 2009 | JP |
| 03049525 | Jun 2003 | WO |
| 2007032792 | Mar 2007 | WO |
| 2011021629 | Feb 2011 | WO |
| 2012074818 | Jun 2012 | WO |
| 2012114979 | Aug 2012 | WO |
| WO-2014030655 | Feb 2014 | WO |
| Entry |
|---|
| Fukao. C4TGIO. UniProtKB database. 2009. |
| Akada et al, Sets of Integrating Plasmids and Gene Disruption Cassettes Containing Improved Counter-Selection Markers Designed for Repeated Use in Budding, Yeast, 2002, vol. 19, p. 393-402. |
| Japanese Office Action, Office Action issued in JP 2014-236022 dated Jun. 19, 2018, 9 pages. |
| European Patent Office, Search Report issued in corresponding European Patent Application No. 14864444.6 dated Mar. 21, 2017, 10 pages. |
| Arndt, GM, et al., Gene regulation by antisense RNA in the fission yeast Schizosaccharomyces pombe, Mol Gen Genet, 1995, 248 (3), 293-300. |
| P40370 ver 110, UniProt/Swiss-Prot, Nov. 13, 2013, Schizosaccharomyces pombe (strain 972/ATCC24843) gene eno101. |
| Q8NKC2 ver 83, UniProt/Swiss-Prot, Nov. 13, 2013, Schizosaccharomyces pombe (strain 972/ATCC 24843) gene eno102. |
| P36580 ver 98, UniProt/Swiss-Prot, Nov. 13, 2013, Schizosaccharomyces pombe (strain 972/ATCC 24843) gene fba1. |
| O43026 ver 106, UniProt/Swiss-Prot, Nov. 13, 2013, Schizosaccharomyces pombe (strain 972/ATCC 24843) gene gpd3. |
| P36623 ver 122, UniProt/Swiss-Prot, Nov. 13, 2013, Schizosaccharomyces pombe (strain 972/ATCC 24843) gene gpm1. |
| P09988 ver 124, UniProt/Swiss-Prot, Nov. 13, 2013, Schizosaccharomyces pombe (strain 972/ATCC 24843) gene hht2. |
| O60101 ver 94, UniProt/Swiss-Prot, Nov. 13, 2013, Schizosaccharomyces pombe (strain 972/ATCC 24843) gene pgk1. |
| P07669 ver 113, UniProt/Swiss-Prot, Nov. 13, 2013, Schizosaccharomyces pombe (strain 972/ATCC 24843) gene tpi1. |
| P0CG72 ver 23, UniProt/Swiss-Prot, Nov. 13, 2013, Schizosaccharomyces pombe (strain 972/ATCC 24843) gene ubi4. |
| P78958 ver 113, UniProt/Swiss-Prot, Nov. 13, 2013, Schizosaccharomyces pombe (strain 972/ATCC 24843) gene gpd1. |
| Japanese Patent Office, Office Action issued in JP 2014-236021 dated Aug. 7, 2018, 10 pages. |
| Wanmeng, Mu, et al., “Characterization of D-Lactate Dehydrogenase from Pediococcus Acidilactici that Converts Phenylpyruvic Acid into Phenyllactic Acid,” Biotechnol. Lett., vol. 34, No. 5, pp. 907-911 (Jan. 20, 2012). |
| Xiaoqiang, Jia, et al., “D-Lactic Acid Production by a Genetically Engineered Strain Corynebacterium Glutamicum,” World J. Microbiol. Biotechnol., vol. 27, No. 9, pp. 2117-2124 (Feb. 4, 2011). |
| Hara, Futoshi, et al., “Lactate Production Using Schizosaccharomyces Pombe,” Dai 61 Kai Abstracts of the Annual Meeting of the Society for Biotechnology, Japan, 2Mp08, p. 190 (2009). |
| Okino, Shohei, et al., “Coryneform Saikin o Mochiita D-Nyusan no Seisan,” Japan Society for Bioscience, Biotechnology and Agrochemistry Taikai Koen Yoshishu, 3A26p12, p. 267 (2008). |
| Japanese Patent Office, International Search Report issued in International Patent Application No. PCT/JP2014/080982 and English-language Translation dated Feb. 17, 2015. |
| Number | Date | Country | |
|---|---|---|---|
| 20190153453 A1 | May 2019 | US |
