The present invention relates to the field of medicine, and in particular to urea compounds containing 2-heteroaromatic ring substitutions, the preparation method and use thereof. More specifically, the present invention relates to inhibitor compounds that can inhibit cyclin-dependent kinases (especially CDK9), preparation method for the compounds, and use of the compounds or compositions for the preventing and/or treating CDK9-related diseases.
Cyclin Dependent Kinase (CDK) is a type of serine/threonine protein kinase whose activity depends on the binding and activation of cyclin partners, and is a key regulator of cell cycle progression and gene transcription. So far, 21 subtypes of the CDK family have been discovered and identified, and these CDK protein kinase functional domains are highly evolutionary conserved. According to the differences in CDK functions, they can be divided into cell cycle regulatory CDKs (such as CDK1, 2, 4, 6) and transcriptional function CDKs (such as CDK7, 8, 9, 12, 13) (Lim S, Kaldis P. Development 2013, 140: 3079-3093). Cell cycle regulatory CDKs directly regulate cell cycle progression by phosphorylating cell cycle-related protein substrates. Transcriptional function CDKs regulate gene transcription processes by phosphorylating the RNA polymerase II complex. Clinical studies have shown that CDKs are frequently mutated, amplified, and overexpressed in different level in many malignant tumor cells (such as acute myeloid leukemia, skin cancer, melanoma, lung cancer, gastric cancer, breast cancer, pancreatic cancer, etc.), these mutations are closely related to the occurrence and development of tumors, as well as patient survival and drug resistance. In addition, a large number of basic studies have also found that high activation of CDKs protein kinases leads to abnormalities in cell cycle regulation and gene transcription, thereby driving tumor occurrence, and inhibiting CDKs can effectively inhibit tumor growth in vivo and in vitro (Chou J, et al., Cancer Discov. 2020, 10(3): 351-370.). In recent years, the studies have found that CDK4/5/6 has tumor immune regulation function, and the selective inhibition of CDK4/5/6 can enhance the effect of tumor immunotherapy. Therefore, kinase inhibitors targeting CDKs have become an important cancer treatment strategy. In particular, the three commercially available CDK4/6 inhibitors (Palbociclib, Ribociclib, Abemaciclib) have fully proved the scientific rationality and commercial viability of developing medicines targeting CDKs protein kinases. Although many different types of CDKs inhibitors have been subjected to extensive preclinical and clinical studies, most CDKs inhibitors have problems such as poor subtype selectivity, high toxic and side effects, and narrow therapeutic windows. So far, only CDK4/6 selective inhibitors (Palbociclib, Ribociclib, Abemaciclib) have been approved for marketing, and they have only been successfully used in the clinical treatment of estrogen receptor-negative, HER2-negative advanced or recurrent breast cancer. Therefore, it is of great significance to develop new, low-toxic, and highly efficient CDK subtype-selective kinase inhibitors. More and more studies have shown that the anti-tumor benefits of non-selective CDKs inhibitors are produced by inhibiting the CDK9-mediated transcriptional regulatory pathway, so research on selective inhibitors of CDK9 has attracted people's attention (Chen R, et al., Blood, 2009, 113: 4637-4645.; MacCallum D E, et al., Cancer Res., 2005, 65: 5399-5407.; Gregory G P, et al., Leukemia, 2015, 29: 1437-1441.; Krystof V., et al., Cell Cycle, 2016, 15: 519-527.).
CDK9 is different from cycle-regulating CDKs in that it only plays a role in the transcription elongation phase and does not participate in the regulation of the cell cycle. CDK9 forms a heterodimeric complex with cell cycle proteins (T and K) as a positive transcription elongation factor b (P-TEFb), which promote transcription elongation by phosphorylating the Ser-2 of carbon-terminal domain of RNA polymerase II. Abnormal activation of CDK9 kinase activity in the P-TEFb complex is associated with the pathological processes of a variety of human diseases, such as hyperproliferative diseases (such as cancer), virus-induced infectious diseases, and cardiovascular diseases (Krystof V, et al., Cell Cycle, 2016, 15: 519-527.; Shudong Wang and Peter M. Fischer, Trends Pharmacol. Sci., 2008, 29: 302-313.). Studies have shown that abnormal activation of CDK9 signaling pathway is present in a variety of human hematomas (such as multiple myeloma, acute myeloid leukemia, lymphoma, chronic lymphocytic leukemia, etc.) and solid tumors (such as lung cancer, liver cancer, breast cancer, prostate cancer, etc.), which affects the expression of anti-apoptotic proteins and promotes occurrence of tumor cell proliferation. Selective inhibition of CDK9 kinase can inhibit the transcriptional activity of RNA polymerase II, downregulates the RNA transcription of a variety of short-term anti-apoptotic proteins related to tumor survival, such as c-Myc, NF-κB response gene transcripts, mitosis Kinase, and affects the expression of anti-apoptotic Bcl-2 family proteins, especially the decrease in the expression of Mcl-1 and XIAP, thereby induces apoptosis in tumor cells to exert anti-tumor effects (Shudong Wang and Peter M. Fischer, Trends Pharmacol. Sci., 2008, 29: 302-313.). In conclusion, multiple evidences suggest that selective inhibition of CDK9 is an important strategy for anti-tumor treatment, and the tumor includes, but not limited to hematological malignancies (such as acute myeloid leukemia, multiple myeloma, chronic lymphocytic leukemia, diffuse large B-cell lymphoma, Burkitt's lymphoma, follicular lymphoma) and solid tumors (such as prostate cancer, breast cancer, lung cancer, neuroblastoma, and colon cancer). In addition, CDK9 inhibitors may also have therapeutic effects in other diseases, including cardiac disease, viral diseases, inflammation and pain.
So far, no highly selective CDK9 inhibitor has been approved for marketing in the world. Currently, only CDK9 selective inhibitors AZD4573, BAY1251152, BAY1143572, KB0742 and GFH009 have entered clinical research. Although these compounds have demonstrated good CDK9 kinase selectivity and anti-tumor effects in vitro and in vivo, the urgent clinical need for highly efficient CDK9 inhibitors with low toxicity has not yet been met. At the same time, in view of the shortcomings of CDK9 selective inhibitors currently under development, the kinase selectivity, activity and druggability still need to be further improved. The compounds disclosed in this patent have high CDK9 activity and selectivity, and have broad application prospects in preventing and/or treating CDK9-mediated diseases.
The oject of the present invention is to provide a new small molecule compound with good specificity and high activity, which can be used as a cyclin-dependent kinase 9 (CDK9) inhibitor to prevent and/or treat diseases mediated by CDK9 kinase, especially in medicines for hyperproliferative diseases and/or virus-induced infectious diseases and/or cardiovascular diseases.
The invention relates to a new type of urea compound containing 2-heteroaromatic ring substitutions, which can effectively inhibit the in vitro growth of CDK9-positive lymphoma cell WSU-DLCL2 and a variety of different tumor cells, and its IC50 value can reach low nanomolar or even picomolar concentrations. Specifically, the present invention provides urea compounds containing 2-heteroaromatic ring substitution of formula (I), their enantiomers, diastereomers, racemates or mixtures thereof, or pharmaceutically acceptable salts thereof, solvate, metabolite or prodrug:
In a preferred embodiment, A3 is O; A1 and A2 are each independently selected from C—R1; that is, a compound represented by formula (II);
More preferably, M is selected from the group consisting of:
In the present invention,
The “alkyl group” refers to an aliphatic hydrocarbon group, which can be a branched or linear alkyl group. Depending on the structure, an alkyl group can be a monovalent group or a divalent group (i.e., an alkylene group), for example, in “hydroxy C1-6 alkyl”, the C1-6 alkyl is actually a divalent group (alkylene). In the present invention, the alkyl group is preferably a “lower alkyl group” having 1 to 6 carbon atoms, even more preferably a “lower alkyl group” having 1 to 3 carbon atoms. Typical alkyl groups include, but are not limited to, methyl, ethyl, propyl, isopropyl, butyl, isobutyl, tert-butyl, pentyl, hexyl, etc.
The “halogen” is F, Cl, Br, or I;
The “halogenated alkyl group” means that at least one hydrogen atom in the alkyl group is replaced by a halogen atom. In certain embodiments, if two or more hydrogen atoms are replaced by halogen atoms, the halogen atoms are the same as or different from each other;
The “heteroalkyl group” means that at least one skeleton C atom in the alkyl is replaced by a heteroatom (N, O, S). In certain embodiments, if two or more C atoms are replaced by heteroatoms, the heteroatoms are the same as or different from each other;
The “cycloalkyl group” is a saturated or unsaturated 3-10 membered monocyclic or polycyclic aliphatic ring, and it can be a monovalent group or a bivalent group (i.e., cycloalkylene);
The “heterocycloalkyl” is a saturated or unsaturated 3-10 membered monocyclic or polycyclic aliphatic heterocyclic ring containing one or more heteroatoms selected from N, O, and S, and can be a monovalent group or bivalent group (i.e. heterocycloalkylene);
The “aryl group” means that each atom constituting the ring in the aryl ring is a carbon atom, including a single ring or a condensed polycyclic ring, and it can be a monovalent group or a bivalent group (i.e., arylene). In the present invention, the aryl ring preferably has 5 to 10 carbon atoms, and more preferably an aryl group has 5 to 7 carbon atoms.
The “aralkyl” refers to one or more hydrogen atoms in the alkyl group being replaced by an aryl group. For example, benzyl, phenethyl.
The “heteroaryl” is an aromatic group containing one or more heteroatoms selected from N, O, and S on the ring. Depending on the structure, a heteroaryl can be a monovalent group or a bivalent group (i.e., a heteroarylene). Examples of heteroaryl groups include, but are not limited to, pyridyl, pyrimidinyl, imidazolyl, pyrazolyl, pyrazinyl, triazolyl, tetrazolyl, thienyl, thiazolyl, furyl, oxazolyl, isoxazolyl, pyrrolyl, quinolyl, isoquinolyl, indolyl, benzimidazolyl, benzofuranyl, indazolyl, indolazinyl, phthalazinyl, pyridazinyl, isoindolyl, pteridyl, purinyl, oxadiazolyl, thiadiazolyl, furazyl, benzofurazyl, benzothienyl, benzothiazolyl, benzoxazolyl, quinazolinyl, etc.
The “heterocyclyl” is a monocyclic or polycyclic ring, and at least one is a saturated or partially saturated (non-aromatic) ring with one or more heteroatoms. Representative heterocyclyl includes the following three situations: 1) each ring is a non-aromatic ring, and at least one ring has heteroatoms; 2) at least one ring is a non-aromatic ring containing heteroatoms, and at least one other ring is an aromatic carbocyclic ring; 3) at least one ring is a non-aromatic ring containing heteroatoms, and at least one other ring is an heteroaromatic ring.
Preferably, the above compound of formula (I) or its deuterated compound or its pharmaceutically acceptable salt or prodrug is selected from the compounds of the following formula:
In the structures of the preferred compounds of the invention listed in the above table, the two carbon atoms each connected to the two para-position substituents on the cyclohexyl or cyclobutyl are not chiral centers (when there are no substituents on the cyclic group), notation of chemical bond and/or is only to indicate that the two chemical bonds connected to the two substituents at the para position have a trans or cis structure relative to the cyclohexyl and cyclobutyl groups, so the compound represented by exchanging these two chemical bonds with each other also fall within the scope of the present invention. To distinguish it from cis-trans, the present invention uses chemical bonds and to represent the specific chiral configuration of the carbon atom. According to page 274 of “Chinese Nomenclature of Organic Compounds 2017”, “According to CIP rules, ‘pseudo-asymmetric carbon atoms’ can use lowercase r or s to indicate their configuration”, and page 284 “According to the CIP priority system, italics R, S symbol (R, S are derived from the first letter of the Latin Rectus and Sinister, meaning “right” and “left”) are used to identify the configuration of the chiral center, axis and plane factors. [Now more widely used to refer to the method for expressing the configuration of various factors such as “Stereogenic” ]”. In this application, lowercase r and s represents cis-trans isomerism, capital R and S represents the absolute configuration of the chiral center, and chemical formulas are used to represent each specific structure of the isomer. However, it should be understood that enantiomers, diastereomers, racemates and mixtures thereof are all within the scope of the present invention.
The present invention also provides a method for preparing the above compound of formula (I) or its deuterated compound or its pharmaceutically acceptable salt or prodrug, which mainly includes the following steps:
Further preferably, the present invention provides two instructive synthesis schemes (as shown in synthetic routes I and II). It will be appreciated that the reagents/reaction conditions shown in the synthetic schemes can be modified or optimized using general knowledge of organic chemistry to prepare different compounds in the invention.
Synthetic route I includes the following synthesis steps:
Step 1: dissolving intermediate 1-a in a suitable anhydrous solvent, adding triphosgene (or thiophosgene) dropwise in an ice bath, then adding alkali dropwise, and react at room temperature to obtain iso(thio)cyanate intermediate 1-b. The solvent is preferably dichloromethane and tetrahydrofuran; the alkali is preferably triethylamine or N,N-diisopropylethylamine.
Step 2: adding intermediate 1-b, intermediate 1-c and alkali to a suitable solvent, reacting by heating to reflux to obtain intermediate 1-d. The solvent is preferably tetrahydrofuran or toluene; the alkali is preferably triethylamine or N,N-diisopropylethylamine.
Step 3: adding intermediate 1-d and the corresponding boric acid or boric acid pinacol ester 1-e to a suitable solvent, adding metal palladium catalyst, ligand, and alkali, and heating to react under argon protection to obtain important intermediate 1-f. The solvent is preferably one or more selected from the group of 1,4-dioxane, tetrahydrofuran, toluene, N,N-dimethylformamide, ethanol, ethylene glycol dimethyl ether and water; the palladium metal catalyst is any one of Pd(PPh3)4, Pd2(dba)3, Pd(OAC)2 and (dppf)PdCl2; the alkali is any one of K2CO3, Cs2CO3, KF, K2HPO4, K3PO4, NaHCO3 and Na2CO3; the ligand is any one of X-Phos, dppf and PCy3.
Step 4: adding intermediate 1-f to a suitable solvent, adding acid, and reacting at room temperature to obtain amino-deprotected intermediate 1-g. The solvent is preferably dichloromethane or ethyl acetate; the acid is preferably trifluoroacetic acid or hydrochloric acid solution (such as dioxane, ethyl acetate, methanol or aqueous solution).
Step 5: On the one hand, when performing a nucleophilic reaction, dissolving intermediate 1-g with exposed amino groups in a suitable solvent, adding the corresponding halide and alkali, and reacting at room temperature to obtain the target product; the solvent is preferably polar aprotic solvents, such as DMF, DMAC, DMSO or NMP; the alkali is preferably K2CO3, Cs2CO3, Et3N or DIPEA. On the other hand, when performing a condensation reaction, dissolving intermediate 1-g, the corresponding acid, condensation agent and alkali in a suitable solvent, and reacting at room temperature to obtain the target product; or dissolving intermediate 1-g with the corresponding acid chloride and alkali in a suitable solvent, reacting at room temperature to obtain the target product. The solvent is preferably DMF or THF; the condensation agent is preferably HATU, HBTU, TBTU or EDCI; the alkali is preferably Et3N or DIPEA.
Further preferably, synthetic route I includes the following synthetic steps:
Step 1: adding triphosgene (0.34 eq) or thiophosgene (1.0 eq) and anhydrous DCM to the round-bottom three-neck flask, adding 1-a (1.0 eq) dichloromethane solution dropwise in ice bath, and then adding dropwise Et3N (2.5-5.0 eq), reacting in ice bath or at room temperature for 2-4 hours, then rotary evaporating under reduced pressure to remove the solvent to obtain intermediate 1-b.
Step 2: adding intermediates 1-b (1.0 eq), 1-c (1.0 eq), Et3N (2.5-5.0 eq) and anhydrous toluene into the round bottom flask, and heating to reflux for 6-12 hours. After the reaction is completed, it is cooled to room temperature, the reaction solution is poured into water, and extracted with ethyl acetate. The aqueous phase is repeatedly extracted with ethyl acetate for 2-3 times. The organic phases are combined and washed 2-3 times with saturated NaCl aqueous solution. After drying with anhydrous Na2SO4, the organic solvent is removed by rotary evaporation under reduced pressure, and intermediate 1-d can be obtained through column chromatography separation and purification.
Step 3: adding intermediate 1-d (1.0 eq), 1-e (1.0-1.5 eq), Pd(OAc)2 (0.1 eq), X-phos (0.1-0.2 eq), K2CO3 (2.5-3.0 eq) and 1,4-dioxane/water (5/1, v/v) to the round bottom flask, heating to 90° C. under argon protection for 4-12 hours. After the reaction is completed, it is cooled to room temperature, the reaction solution is poured into water, and extracted with ethyl acetate. The aqueous phase is repeatedly extracted with ethyl acetate for 2-3 times. The organic phases are combined and washed 2-3 times with saturated NaCl aqueous solution. After drying with anhydrous Na2SO4, the organic solvent is removed by rotary evaporation under reduced pressure, and the intermediate 1-f can be obtained through column chromatography separation and purification.
Step 4: adding intermediate 1-f (1.0 eq) and DCM to the round-bottomed flask, adding excess dioxane hydrochloride solution, and reacting at room temperature overnight. After the reaction is completed, the solvent is removed by rotary evaporation under reduced pressure to obtain the hydrochloride salt of the intermediate 1-g, which can be directly used in the next step of the reaction.
Step 5: for nucleophilic reaction: adding intermediate 1-g (1.0 eq), corresponding halide (1.0-1.5 eq), K2CO3 (3.0-5.0 eq) and DMF to the round-bottom flask, reacting at room temperature for 12 hours. After the reaction is completed, it is cooled to room temperature, the reaction solution is poured into water, and extracted with ethyl acetate. The water phase is repeatedly extracted with ethyl acetate for 2-3 times. The organic phases are combined and washed 3 times with water and saturated NaCl aqueous solution, respectively. After drying with anhydrous Na2SO4, the organic solvent is removed by rotary evaporation under reduced pressure, and the target product can be obtained through column chromatography separation and purification.
For condensation reaction: adding intermediate 1-g (1.0 eq), corresponding acid (1.0 eq), condensation agent HATU (1.0-1.3 eq), DIPEA (2.5-3.0 eq) and DMF to the round bottom flask, reacting at room temperature for 12 hours. After the reaction is completed, it is cooled to room temperature, the reaction solution is poured into water, and extracted with ethyl acetate. The water phase is repeatedly extracted with ethyl acetate for 2-3 times. The organic phases are combined and washed 3 times with water and saturated NaCl aqueous solution, respectively. After drying with anhydrous Na2SO4, the organic solvent is removed by rotary evaporation under reduced pressure, and the target product can be obtained through column chromatography separation and purification.
Synthetic route II includes the following synthetic steps:
Step 1: reacting by microwave to rearrange the intermediate acid 2-b in a suitable anhydrous solvent under the action of diphenyl phosphate azide (DPPA) and an alkali, and then reacting by microwave with intermediate amine 2-a to form intermediate 2-c. The solvent is preferably toluene; the alkali is preferably Et3N or DIPEA.
Step 2: adding intermediate 2-c and corresponding boric acid or boric acid pinacol ester 2-d to a suitable solvent, adding metal palladium catalyst, ligand, and alkali, and heating the reaction under argon protection to obtain important intermediate 2-e. The solvent is preferably one or more selected from the group of 1,4-dioxane, tetrahydrofuran, toluene, N,N-dimethylformamide, ethanol, ethylene glycol dimethyl ether and water; the palladium metal catalyst is any one of Pd(PPh3)4, Pd2(dba)3, Pd(OAC)2 and (dppf)PdCl2; the alkali is any one of K2CO3, Cs2CO3, KF, K2HPO4, K3PO4, NaHCO3 and Na2CO3; the ligand is any one of X-Phos, dppf and PCy3.
Step 3: adding intermediate 2-e to a suitable solvent, adding acid, and reacting at room temperature to obtain amino-deprotected intermediate 2-f. The solvent is preferably dichloromethane or ethyl acetate; the acid is preferably trifluoroacetic acid or hydrochloric acid solution (such as dioxane, ethyl acetate, methanol or aqueous solution).
Step 4: On the one hand, when performing a nucleophilic reaction, dissolving intermediate 2-f with exposed amino groups in a suitable solvent, adding the corresponding halide and alkali, and reacting at room temperature to obtain the target product; the solvent is preferably polar aprotic solvents, such as DMF, DMAC, DMSO or NMP; the alkali is preferably K2CO3, Cs2CO3, Et3N or DIPEA. On the other hand, when performing a condensation reaction, dissolving intermediate 2-f, the corresponding acid, condensation agent and alkali in a suitable solvent, and reacting at room temperature to obtain the target product; or dissolving intermediate 2-f with the corresponding acid chloride and alkali in a suitable solvent, reacting at room temperature to obtain the target product. The solvent is preferably DMF or THF; the condensation agent is preferably HATU, HBTU, TBTU or EDCI; the alkali is preferably Et3N or DIPEA.
Further preferably, synthetic route II includes the following synthesis steps:
Step 1: adding intermediate 2-b (1.2-1.5 eq), DPPA (1.3-1.5 eq) and Et3N (3.0-5.0 eq) into the microwave reaction tube, and reacting under microwave at 100° C. for 2-5 minutes, then adding intermediate 2-a (1.0 eq) and reacting under microwave at 100° C. for 5-30 minutes. After the reaction is completed, cooled to room temperature, the reaction solution is poured into water, and extracted with ethyl acetate. The aqueous phase is repeatedly extracted with ethyl acetate for 2-3 times. The organic phases are combined and washed 2-3 times with saturated NaCl aqueous solution. After drying with anhydrous Na2SO4, the organic solvent is removed by rotary evaporation under reduced pressure, and intermediate 2-c can be obtained through column chromatography separation and purification.
Step 2: adding intermediate 2-c (1.0 eq), 2-d (1.0-1.5 eq), Pd(OAc)2 (0.1 eq), X-phos (0.1-0.2 eq), K2CO3 (2.5-3.0 eq) and 1,4-dioxane/water (5/1, v/v) to the round bottom flask, heating to 90° C. under argon protection to react for 4-12 hours. After the reaction is completed, it is cooled to room temperature, the reaction solution is poured into water, and extracted with ethyl acetate. The aqueous phase is repeatedly extracted with ethyl acetate for 2-3 times. The organic phases are combined and washed 2-3 times with saturated NaCl aqueous solution. After drying with anhydrous Na2SO4, the organic solvent is removed by rotary evaporation under reduced pressure, and intermediate 2-e can be obtained through column chromatography separation and purification.
Step 3: adding intermediate 2-e (1.0 eq) and DCM to the round-bottomed flask, adding excess dioxane hydrochloride solution, and reacting at room temperature overnight. After the reaction is completed, the solvent is removed by rotary evaporation under reduced pressure to obtain the hydrochloride salt of the intermediate 2-f, which can be directly used in the next step of the reaction.
Step 4: for nucleophilic reaction: adding intermediate 2-f (1.0 eq), corresponding halide (1.0-1.5 eq), K2CO3 (3.0-5.0 eq) and DMF to the round-bottom flask, reacting at room temperature for 12 hours. After the reaction is completed, it is cooled to room temperature, the reaction solution is poured into water, and extracted with ethyl acetate. The water phase is repeatedly extracted with ethyl acetate for 2-3 times. The organic phases are combined and washed 3 times with water and saturated NaCl aqueous solution, respectively. After drying with anhydrous Na2SO4, the organic solvent is removed by rotary evaporation under reduced pressure, and the target product can be obtained through column chromatography separation and purification.
For condensation reaction: adding intermediate 2-f (1.0 eq), corresponding acid (1.0 eq), condensation agent HATU (1.0-1.3 eq), DIPEA (2.5-3.0 eq) and DMF to the round bottom flask, reacting at room temperature for 12 hours. After the reaction is completed, cooled to room temperature, the reaction solution is poured into water, and extracted with ethyl acetate. The water phase is repeatedly extracted with ethyl acetate for 2-3 times. The organic phases are combined and washed 3 times with water and saturated NaCl aqueous solution, respectively. After drying with anhydrous Na2SO4, the organic solvent is removed by rotary evaporation under reduced pressure, and the target product can be obtained through column chromatography separation and purification.
The present invention also provides a pharmaceutical composition, which is characterized in that it includes one or more of the above-mentioned compound of formula (I) or its deuterated compound or its pharmaceutically acceptable salt or prodrug, and a pharmaceutically acceptable of excipients.
The present invention also provides the use of the above-mentioned compound of formula (I) or its deuterated compound or its pharmaceutically acceptable salt or prodrug or the above-mentioned pharmaceutical composition in the preparation of CDK inhibitors (especially CDK9 inhibitors).
The present invention also provides the use of the above-mentioned compound of formula (I) or its deuterated compound or its pharmaceutically acceptable salt or prodrug or the above-mentioned pharmaceutical composition in the preparation of the medicine for treating, preventing or releasing the diseases, disorders or conditions regulated by the activity of serine kinases, or diseases, disorders or conditions affected by them, or diseases, disorders or conditions involved with the activity of cyclin dependent kinase. The disease, disorder or condition is preferably selected from the group consisting of hyperproliferative diseases (eg tumors), virus-induced infectious diseases and cardiovascular diseases.
The compound of formula (I) of the present invention or its deuterated compound or its pharmaceutically acceptable salt or prodrug, or its pharmaceutical composition is preferably used for the treatment, prevention or improvement of tumors, and the tumors are selected from hematological malignancies (including but not limited to acute myeloid leukemia, multiple myeloma, chronic lymphocytic leukemia, diffuse large B-cell lymphoma, Burkitt's lymphoma, follicular lymphoma), and solid tumors (including but not limited to neuroblastoma, skin cancer, melanoma, lung cancer, gastric cancer, breast cancer, or intestinal cancer).
The compound of formula (I) of the present invention has inhibitory activity against CDK9, and the representative compound has significant in vitro anti-tumor activity against CDK9 high-expressing tumor cells. Representative compounds have plasma stability and low clearance.
Specific embodiments of the present invention will be described in detail below. It should be understood that the specific embodiments described here are only used to illustrate the present invention and are not intended to limit the present invention.
Step 1: triphosgene (583 mg, 1.97 mmol) and anhydrous DCM (40 mL) were added to a round-bottom three-neck flask, and the DCM solution (10 mL) of compound 1-a (1.0 g, 5.78 mmol) was added dropwise in an ice bath, then anhydrous Et3N (3.21 mL, 23.12 mmol) was added dropwise, and the reaction was stopped after continuing to stir for 2 hours. The solvent was evaporated to dryness under reduced pressure to obtain yellow solid 1-b, which could be directly used in the next reaction without further purification.
Step 2: intermediates 1-b obtained in step 1, 1-c (1.24 g, 5.78 mmol), Et3N (2.41 mL, 17.34 mmol) and anhydrous toluene (60 mL) were added into the round-bottom flask, and heated to reflux to react overnight. After the reaction was completed, it was cooled to room temperature, the reaction solution was poured into water, and extracted with ethyl acetate. The aqueous phase was repeatedly extracted with ethyl acetate for 2-3 times. The organic phases were combined and washed 3 times with saturated NaCl aqueous solution. After drying with anhydrous Na2SO4, the solvent was evaporated to dryness under reduced pressure, and the resultant was purified by column chromatography to obtain light yellow solid 1-d (1.1 g, yield 46.05%). 1H NMR (400 MHz, chloroform-d) δ 8.99 (s, 1H), 8.00 (d, J=5.9 Hz, 2H), 7.03 (dd, J=5.5, 1.6 Hz, 1H), 7.00 (s, 1H), 4.44 (d, J=7.9 Hz, 1H), 3.78-3.66 (m, 1H), 3.53-3.40 (m, 1H), 2.15-1.97 (m, 4H), 1.44 (s, 9H), 1.42-1.26 (m, 4H). MS 413.1 (M+1).
Step 3: intermediate 1-d (340 mg, 0.823 mmol), 1-e (210 mg, 1.23 mmol), Pd(OAc)2 (18.5 mg, 0.082 mmol), X-phos (78.4 mg, 0.165 mmol), K2CO3 (284 mg, 2.06 mmol) and THF/H2O (12/4 mL) were added into the round-bottom flask, reacted at 80° C. for 4 hours under argon protection. After the reaction was completed, it was cooled to room temperature, the reaction solution was poured into water, and extracted with ethyl acetate. The aqueous phase was repeatedly extracted with ethyl acetate for 2-3 times. The organic phases were combined and washed 3 times with saturated NaCl aqueous solution. After drying with anhydrous Na2SO4, the solvent was evaporated to dryness under reduced pressure, and the resultant was purified by column chromatography to obtain target compound 1 (349 mg, yield 92.52%). 1H NMR (400 MHz, chloroform-d) δ 9.28 (br s, 1H), 8.17 (d, J=5.4 Hz, 1H), 7.45 (br s, 1H), 7.29-7.24 (m, 1H), 7.00 (dd, J=5.4, 1.4 Hz, 1H), 6.84 (s, 1H), 6.79-6.69 (m, 2H), 4.43 (d, J=8.2 Hz, 1H), 3.81 (s, 3H), 3.78-3.65 (m, 1H), 3.55-3.40 (m, 1H), 2.16-1.99 (m, 4H), 1.45 (s, 9H), 1.42-1.23 (m, 4H). MS 459.2 (M+1).
Compound 1 (300 mg, 0.654 mmol) and DCM (5 mL) were added to the round-bottomed flask, 4.0 M dioxane hydrochloride solution (0.5 mL) was added, and reacted at room temperature overnight. After the reaction, the organic solvent was evaporated to dryness under reduced pressure, DCM was added to redissolve, 1.0 M NaOH aqueous solution was added dropwise in an ice bath to adjust the pH to weak alkalinity, extracted with DCM/H2O, the organic phases were combined and washed twice with saturated NaCl aqueous solution. After drying over anhydrous Na2SO4, the solvent was evaporated to dryness under reduced pressure and the resultant was separated by column chromatography to obtain a white solid 2 (223 mg, yield 95.1%). 1H NMR (400 MHz, chloroform-d) δ 9.21 (s, 1H), 8.12 (d, J=5.4 Hz, 1H), 7.86 (s, 1H), 7.24 (dd, J=6.8, 1.5 Hz, 1H), 6.97 (dd, J=5.4, 1.4 Hz, 1H), 6.93 (s, 1H), 6.75-6.65 (m, 2H), 3.79 (s, 3H), 3.76-3.63 (m, 1H), 2.87-2.77 (m, 1H), 2.35-2.15 (m, 2H), 2.17-2.07 (m, 2H), 2.02-1.90 (m, 2H), 1.42-1.32 (m, 4H). MS 359.1 (M+1).
Compound 2 (100 mg, 0.279 mmol), bromoethyl methyl ether (78 mg, 0.558 mmol), K2CO3 (116 mg, 0.837 mmol) and DMF (4 mL) were added to the round bottom flask, the reaction was conducted at 50° C. overnight. After the reaction was completed, the reaction solution was poured into water and extracted with ethyl acetate. The aqueous phase was extracted with ethyl acetate for 2-3 times. The organic phases were combined and washed 3 times with water and saturated NaCl aqueous solution successively. After drying with anhydrous Na2SO4, the solvent was evaporated to dryness under reduced pressure, and the resultant was purified by column chromatography to obtain white solid 3 (73 mg, yield 62.82%). 1H NMR (400 MHz, chloroform-d) δ 9.29 (d, J=7.8 Hz, 1H), 8.15 (d, J=5.4 Hz, 1H), 7.36 (s, 1H), 7.27 (dd, J=6.9, 1.5 Hz, 1H), 6.99 (dd, J=5.4, 1.5 Hz, 1H), 6.83 (s, 1H), 6.78-6.69 (m, 2H), 3.82 (s, 3H), 3.74 (dd, J=7.4, 3.9 Hz, 1H), 3.57-3.49 (m, 2H), 3.37 (s, 3H), 2.83 (t, J=5.1 Hz, 2H), 2.52 (dt, J=10.5, 4.9 Hz, 1H), 2.19-2.10 (m, 2H), 2.03-1.95 (m, 2H), 1.39-1.28 (m, 4H). MS 417.2 (M+1).
Compound 2 (80 mg, 0.223 mmol), Et3N (56 mg, 0.56 mmol) and DCM (5 mL) were added to the round-bottomed flask, acetic anhydride (30 mg, 0.29 mmol) was added dropwise under ice bath, and stirred at room temperature for 1 hour. After the reaction was completed, the reaction was quenched by adding a small amount of water, poured into water, and extracted with ethyl acetate. The aqueous phase was repeatedly extracted with ethyl acetate for 2-3 times. The organic phases were combined and washed with saturated NaCl aqueous solution twice. After drying with anhydrous Na2SO4, the solvent was evaporated to dryness under reduced pressure, and the resultant was purified by column chromatography to obtain white solid 4 (72 mg, 80.55%). 1H NMR (400 MHz, DMSO-d6) δ 9.17 (s, 1H), 8.23 (d, J=4.9 Hz, 1H), 7.97 (d, J=2.3 Hz, 1H), 7.74-7.68 (m, 1H), 7.25 (dd, J=4.8, 2.2 Hz, 1H), 7.15 (dd, J=8.0, 2.2 Hz, 1H), 7.00 (m, 1H), 6.56 (s, 1H), 5.48 (s, 1H), 4.20-4.14 (m, 1H), 3.81 (s, 3H), 3.31-3.23 (m, 1H), 1.99 (s, 3H), 1.80-1.64 (m, 2H), 1.58-1.38 (m, 2H), 1.34-1.24 (m, 4H). MS 401.2 (M+1).
The synthesis method was the same as Example 2 except that 4,5-difluoro-2-methoxyphenylboronic acid was used instead of 4-fluoro-2-methoxyphenylboronic acid (compound 1-e). 1H NMR (400 MHz, DMSO-d6) δ 9.15 (s, 1H), 8.19 (d, J=4.9 Hz, 1H), 7.93 (d, J=2.3 Hz, 1H), 7.60 (dd, J=8.0, 4.9 Hz, 1H), 7.21 (dd, J=4.8, 2.2 Hz, 1H), 7.09 (dd, J=8.0, 5.0 Hz, 1H), 6.49 (s, 1H), 3.77 (s, 3H), 3.28-3.09 (m, 1H), 2.61-2.43 (m, 1H), 1.79-1.61 (m, 2H), 1.55-1.37 (m, 2H), 1.31-1.15 (m, 4H), 1.08-0.89 (m, 2H). MS 377.1 (M+1).
The synthesis method was the same as Example 2 except that 4-fluoro-3-methoxyphenylboronic acid was used instead of 4-fluoro-2-methoxyphenylboronic acid. 1H NMR (400 MHz, DMSO-d6) δ 9.16 (s, 1H), 8.20 (d, J=4.9 Hz, 1H), 8.11 (d, J=2.3 Hz, 1H), 7.94 (t, J=8.0 Hz, 1H), 7.60 (dd, J=4.8, 2.2 Hz, 1H), 7.23 (dd, J=4.9, 1.8 Hz, 1H), 7.11-7.02 (m, 1H), 6.51 (s, 1H), 3.80 (s, 3H), 3.30-3.11 (m, 1H), 2.62-2.44 (m, 1H), 1.56-1.41 (m, 2H), 1.33-1.14 (m, 6H), 1.06-0.87 (m, 2H). MS 359.1 (M+1).
The synthesis method was the same as Example 2 except that 2,4-difluoro-5-methoxyphenylboronic acid was used instead of 4-fluoro-2-methoxyphenylboronic acid. 1H NMR (400 MHz, chloroform-d) δ 9.17 (s, 1H), 8.41 (s, 1H), 8.28 (d, J=4.8 Hz, 1H), 7.43 (dt, J=4.8, 2.2 Hz, 1H), 7.06 (t, J=8.0 Hz, 1H), 6.87 (s, 1H), 5.71 (s, 1H), 4.82 (s, 2H), 3.81 (s, 3H), 3.24 (br s, 1H), 2.57-2.49 (m, 1H), 1.89-1.76 (m, 2H), 1.67-1.59 (m, 2H), 1.36-1.25 (m, 4H). MS 377.1 (M+1).
The synthesis method was the same as Example 2 except that 4-fluoro-benzofuran-7-boronic acid was used instead of 4-fluoro-2-methoxyphenylboronic acid. 1H NMR (400 MHz, DMSO-d6) δ 9.16 (s, 1H), 8.23 (d, J=4.9 Hz, 1H), 7.97 (d, J=2.3 Hz, 1H), 7.91 (d, J=1.3 Hz, 1H), 7.74 (dd, J=7.9, 5.1 Hz, 1H), 7.25 (dd, J=4.8, 2.2 Hz, 1H), 7.07-6.99 (m, 1H), 6.97 (dd, J=4.9, 1.4 Hz, 1H), 6.56 (s, 1H), 3.32-3.15 (m, 1H), 2.65-2.49 (m, 1H), 1.80-1.66 (m, 2H), 1.55-1.43 (m, 2H), 1.38-1.20 (m, 6H). MS 369.1 (M+1).
The synthesis method was the same as Example 2 except that 3-isopropyl-2-methyl-2H-indazole-5-boronic acid pinacol ester was used instead of 4-fluoro-2-methoxyphenylboronic acid. 1H NMR (400 MHz, DMSO-d6) δ 9.14 (s, 1H), 8.21 (d, J=4.9 Hz, 1H), 8.19 (d, J=2.4 Hz, 1H), 8.03-7.94 (m, 2H), 7.45-7.39 (m, 1H), 7.25 (dd, J=4.8, 2.2 Hz, 1H), 6.56 (s, 1H), 3.79 (s, 3H), 3.32-3.11 (m, 2H), 2.65-2.49 (m, 1H), 1.82-1.63 (m, 2H), 1.57-1.41 (m, 2H), 1.34-1.22 (m, 5H), 1.21 (d, J=4.8 Hz, 6H), 1.08-0.95 (m, 2H). MS 407.2 (M+1).
The synthesis method was the same as Example 2 except that 2-chloro-4-fluorophenyl boronic acid was used instead of 4-fluoro-2-methoxyphenyl boronic acid. 1H NMR (400 MHz, methanol-d4) δ 8.24 (d, J=5.3 Hz, 1H), 7.48-7.31 (m, 2H), 7.21 (td, J=8.4, 2.6 Hz, 1H), 7.16 (d, J=1.5 Hz, 1H), 7.02 (dd, J=5.4, 1.6 Hz, 1H), 3.67-3.53 (m, 1H), 3.14-3.01 (m, 1H), 2.26-1.99 (m, 4H), 1.65-1.37 (m, 4H). MS 363.1 (M+1).
The synthesis method was the same as Example 3 except that 2-chloro-4-fluorophenyl boronic acid was used instead of 4-fluoro-2-methoxyphenyl boronic acid. 1H NMR (400 MHz, chloroform-d) δ 9.21 (d, J=7.5 Hz, 1H), 8.20 (d, J=5.3 Hz, 1H), 7.76 (s, 1H), 7.33-7.19 (m, 2H), 7.07 (td, J=8.2, 2.6 Hz, 1H), 6.92 (dd, J=5.4, 1.5 Hz, 1H), 6.77 (s, 1H), 3.87-3.63 (m, 1H), 3.62-3.44 (t, J=5.1 Hz, 2H), 3.37 (s, 3H), 2.83 (t, J=5.1 Hz, 2H), 2.61-2.41 (m, 1H), 2.24-2.06 (m, 2H), 2.05-1.91 (m, 2H), 1.45-1.14 (m, 5H). MS 421.1 (M+1).
The synthesis method was the same as Example 2 except that 4-fluoro-2-trifluoromethoxyphenyl boronic acid was used instead of 4-fluoro-2-methoxyphenyl boronic acid. 1H NMR (400 MHz, DMSO-d6) δ 9.18 (s, 1H), 8.23 (d, J=4.9 Hz, 1H), 7.97 (d, J=2.3 Hz, 1H), 7.71 (dd, J=8.4, 5.0 Hz, 1H), 7.25 (dd, J=4.8, 2.2 Hz, 1H), 7.15 (dd, J=8.0, 2.0 Hz, 1H), 7.00 (m, 1H), 6.58 (s, 1H), 3.32-3.21 (m, 1H), 2.85-2.74 (m, 1H), 1.89-1.74 (m, 2H), 1.55-1.45 (m, 2H), 1.33-1.05 (m, 6H). MS 413.1 (M+1).
The synthesis method was the same as Example 2 except that 1-methyl-1H-pyrazole-4-boronic acid pinacol ester was used instead of 4-fluoro-2-methoxyphenyl boronic acid. 1H NMR (400 MHz, DMSO-d6) δ 9.19 (s, 1H), 8.23 (s, 1H), 8.18 (brs, 1H), 8.09 (d, J=5.4 Hz, 1H), 7.87 (s, 1H), 7.48 (s, 1H), 7.11 (d, J=5.4 Hz, 1H), 3.88 (s, 3H), 3.45-3.30 (m, 2H), 3.17 (brs, 1H), 3.02-2.90 (m, 1H), 1.96-1.82 (m, 4H), 1.59-1.19 (m, 4H). MS 315.2 (M+1).
The synthesis method was the same as Example 3 except that 1-methyl-1H-pyrazole-4-boronic acid pinacol ester was used instead of 4-fluoro-2-methoxyphenyl boronic acid. 1H NMR (400 MHz, methanol-d4) δ 8.14-8.06 (m, 2H), 7.92 (brs, 1H), 7.20 (brs, 1H), 7.13 (dd, J=5.5, 1.6 Hz, 1H), 3.94 (s, 3H), 3.65-3.58 (m, 1H), 3.60 (t, J=5.7, 4.5 Hz, 2H), 3.40 (s, 3H), 3.08 (t, J=5.1 Hz, 2H), 2.91-2.80 (m, 1H), 2.23-2.07 (m, 4H), 1.53-1.40 (m, 4H). MS 373.2 (M+1).
Step 1: triphosgene (422 mg, 1.97 mmol) and anhydrous DCM (40 mL) were added to a round-bottom three-neck flask, and the DCM solution (20 mL) of compound 15-j (1.0 g, 5.78 mmol) was added dropwise in an ice bath, then anhydrous Et3N (4.02 mL, 28.90 mmol) was added dropwise, and the reaction was stopped after continuing to stir for 2 hours. After the organic solvent was removed by rotary evaporation under reduced pressure, a light yellow solid was obtained. The above intermediate, 15-k (1.24 g, 5.78 mmol), Et3N (3.21 mL, 23.12 mmol) and anhydrous toluene (70 mL) were added to the round-bottom flask, and heated to reflux to react overnight. After the reaction was completed, it was cooled to room temperature, the reaction solution was poured into water, and extracted with ethyl acetate. The aqueous phase was repeatedly extracted with ethyl acetate for 2-3 times. The organic phases were combined and washed 3 times with saturated NaCl aqueous solution. After drying with anhydrous Na2SO4, the solvent was evaporated to dryness under reduced pressure, and the resultant was purified by column chromatography to obtain light yellow solid 15-1 (1.5 g, yield 62.79%). 1H NMR (400 MHz, chloroform-d) δ 8.99 (s, 1H), 8.00 (d, J=5.9 Hz, 2H), 7.03 (dd, J=5.5, 1.6 Hz, 1H), 7.00 (s, 1H), 4.44 (d, J=7.9 Hz, 1H), 3.78-3.66 (m, 1H), 3.53-3.40 (m, 1H), 2.15-1.97 (m, 4H), 1.44 (s, 9H), 1.42-1.26 (m, 4H). MS 413.1 (M+1).
Step 2: intermediate 15-1 (150 mg, 0.36 mmol), 15-i (114 mg, 0.44 mmol), Pd2dba3 (12 mg, 0.054 mmol), X-phos (34.6 mg, 0.073 mmol), K2HPO4 (190 mg, 1.09 mmol) and dioxane/H2O (10/2 mL) were added into the round-bottom flask, and reacted at 85° C. for 6 hours under argon protection. After the reaction was completed, it was cooled to room temperature, the reaction solution was poured into water, and extracted with ethyl acetate. The aqueous phase was repeatedly extracted with ethyl acetate for 2-3 times. The organic phases were combined and washed 3 times with saturated NaCl aqueous solution. After drying with anhydrous Na2SO4, the solvent was evaporated to dryness under reduced pressure, and the resultant was purified by column chromatography to obtain light yellow solid 15-m (80 mg, yield 47.04%). 1H NMR (400 MHz, DMSO-d6) δ 9.20 (s, 1H), 8.23 (d, J=5.0 Hz, 1H), 8.15 (s, 1H), 7.95 (d, J=2.2 Hz, 1H), 7.26 (dd, J=4.9, 2.2 Hz, 1H), 6.64 (s, 1H), 3.95 (s, 2H), 3.33-3.16 (m, 1H), 2.94 (s, 2H), 2.67-2.52 (m, 1H), 1.92-1.78 (m, 2H), 1.67-1.53 (m, 2H), 1.46-1.34 (m, 11H), 1.30 (s, 6H), 1.28-1.09 (m, 4H). MS 469.3 (M+1).
Step 3: Compound 15-m (80 mg, 0.17 mmol) and DCM (5 mL) were added to the round-bottomed flask, 4.0 M dioxane solution of hydrochloride (0.3 mL) was added, and reacted at room temperature overnight. After the reaction was completed, the organic solvent was evaporated to dryness under reduced pressure, methanol was added to redissolve, and 1.0M NaOH aqueous solution was added dropwise in an ice bath to adjust the pH to weak alkalinity.
The solvent was evaporated to dryness under reduced pressure, and the resultant was separated by column chromatography to obtain a white solid 15 (50 mg, yield 79.48%). 1H NMR (400 MHz, DMSO-d6) δ 9.21 (s, 1H), 8.23 (d, J=4.9 Hz, 1H), 8.16 (s, 1H), 7.97 (d, J=2.3 Hz, 1H), 7.25 (dd, J=4.8, 2.2 Hz, 1H), 6.56 (s, 1H), 3.91 (s, 2H), 3.33-3.16 (m, 1H), 2.91 (s, 2H), 2.66-2.50 (m, 1H), 1.92-1.78 (m, 2H), 1.67-1.52 (m, 2H), 1.46-1.37 (m, 4H), 1.29 (s, 6H), 1.23-1.12 (m, 2H). MS 369.2 (M+1).
Wherein the intermediate 5,5-dimethyl-3-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-5,6-dihydro-4H-pyrrolo[1,2-b]pyrazole (15-i) was prepared as follows:
Step 1: intermediate 15-a (25.0 g, 171.02 mmol), Et3N (34.61 g, 342.03 mmol), DMAP (1.04 g, 8.55 mmol) and anhydrous THE (200 mL) were added into the round bottom flask, and TsCl (35.86 g, 188.12 mmol) was added in three batches under ice bath. The temperature was raised to room temperature, and then the reaction was refluxed at 80° C. overnight. After the reaction was completed, most of the solvent was removed by rotary evaporation under reduced pressure, the resultant was poured into water, extracted with ethyl acetate, and the water phase was repeatedly extracted with ethyl acetate 2-3 times. The organic phases were combined and washed twice with saturated NaCl aqueous solution, dried over anhydrous Na2SO4, the solvent was evaporated to dryness under reduced pressure, and purified by column chromatography to obtain colorless oil 15-b (31.0 g, yield 60.35%). 1H NMR (400 MHz, chloroform-d) δ 7.77 (d, J=8.3 Hz, 1H), 7.34 (d, J=8.1 Hz, 1H), 4.07 (q, J=7.1 Hz, 1H), 4.00 (s, 1H), 2.45 (s, 2H), 1.19 (t, J=7.0 Hz, 1H), 1.17 (s, 6H). MS 301.1 (M+1).
Step 2: intermediate 15-b (31.0 g, 103.21 mmol), pyrazole (9.13 g, 134.17 mmol), cesium carbonate (100.88 g, 309.62 mmol), anhydrous DMF (100 mL) were added into the round bottom flask, and reacted at 100° C. overnight. After the reaction was completed, it was cooled to room temperature, most of the solvent was evaporated to dryness under reduced pressure, then the reaction solution was poured into water, extracted with ethyl acetate, and the water phase was repeatedly extracted with ethyl acetate 2-3 times. The organic phases were combined and washed three times with water and saturated NaCl aqueous solution successively, dried over anhydrous Na2SO4, the solvent was evaporated to dryness under reduced pressure, and the resultant was purified by column chromatography to obtain colorless oil 15-d (11.2 g, yield 55.3%). 1H NMR (400 MHz, chloroform-d) δ 7.44 (s, 1H), 7.34 (d, J=2.3 Hz, 1H), 6.19 (t, J=2.4 Hz, 1H), 4.27 (s, 2H), 4.13 (q, J=7.3 Hz, 2H), 1.23 (t, J=7.1 Hz, 4H), 1.17 (s, 6H). MS 197.1 (M+1).
Step 3: 15-d (11.2 g, 57.07 mmol) and methanol (60 mL) were added to the round bottom flask, NaOH aqueous solution (5 M, 22.83 mL, 114.14 mmol) was added thereto dropwise, and reacted at 50° C. overnight. After the reaction was completed, it was cooled to room temperature, 6M hydrochloric acid was used to adjust pH=3 in an ice bath, the solvent was evaporated to dryness under reduced pressure, and the resultant was separated by column chromatography to obtain the light-yellow oily substance. After standing, it solidifies into a white crystalline solid 15-e (9.2 g, yield 95.8%). 1H NMR (400 MHz, DMSO-d6) δ 12.47 (s, 1H), 7.61 (d, J=2.3 Hz, 1H), 7.41 (d, J=1.8 Hz, 1H), 6.22 (t, J=2.1 Hz, 1H), 4.24 (s, 2H), 1.05 (s, 6H). MS 169.1 (M+1).
Step 4: intermediate 15-e (9.2 g, 54.7 mmol) and anhydrous THE (100 mL) were added to the round bottom three-neck flask, n-BuLi (1.6 M, 70.08 mL, 112.13 mmol) was added dropwise at −78° C., the resultant was stirred for 30 minutes, warmed to −45° C. and stirred for 2 hours, then warmed to 15° C. and stirred for 1 hour to complete the reaction. The reaction was quenched by dropwise adding saturated NH4Cl aqueous solution at 0° C. The reaction solution was poured into saturated NH4Cl aqueous solution, the organic phases were separated. The aqueous phase was extracted 3 times with ethyl acetate. The organic phases were combined and washed 2 times with saturated NaCl aqueous solution, the resultant was evaporated to dryness under reduced pressure to obtain yellow oil 15-f (3.21 g, yield 39.08%). 1H NMR (400 MHz, chloroform-d) δ 7.79 (s, 1H), 6.65 (s, 1H), 4.28 (s, 2H), 1.38 (s, 6H). MS 151.1 (M+1).
Step 5: intermediate 15-f (3.21 g, 21.37 mmol), 85% hydrazine hydrate (6.11 mL, 106.87 mmol) and diethylene glycol (45 mL) were added into the round bottom flask, and reacted at 180° C. for 1 hour. The excess hydrazine hydrate was removed by rotary evaporation under reduced pressure, then KOH was added, and reacted at 150° C. for 3 hours. The reaction was cooled to room temperature, 50 mL of water was added to dilute, 2N hydrochloric acid aqueous solution was used under ice bath to adjust the pH to 4.5, the resultant was extracted with diethyl ether (5×50 mL), the organic phases were combined and washed with water (3×20 mL) and saturated NaCl aqueous solution (2×20 mL) successively, dried over anhydrous Na2SO4 and filtered, and the solvent was evaporated to dryness under reduced pressure to obtain yellow oily product 15-g (1.84 g, yield 63.3%). 1H NMR (400 MHz, chloroform-d) δ 7.48 (d, J=1.8 Hz, 1H), 5.92 (s, 1H), 3.86 (s, 2H), 2.67 (s, 2H), 1.27 (s, 6H). MS 137.1 (M+1).
Step 6: intermediate 15-g (1.84 g, 13.51 mmol) and DCM (20 mL) were added into the round bottom flask, NBS (2.4 g, 13.51 mmol) was added under ice bath, and reacted at room temperature overnight. After the reaction was completed, DCM (20 mL) was added to dilute the reaction solution, the resultant was washed with water (2×20 mL) and saturated NaCl aqueous solution (2×20 mL) in sequence, dried over anhydrous Na2SO4 and filtered, and the solvent was evaporated to dryness under reduced pressure to obtain yellow oily product 15-h (1.93 g, yield 66.28%). 1H NMR (400 MHz, chloroform-d) δ 7.41 (s, 1H), 3.89 (s, 2H), 2.64 (s, 2H), 1.29 (s, 6H). 215.1 (M+1).
Step 7: intermediate 15-h (1.93 g, 8.95 mmol), AcOK (2.2 g, 22.39 mmol) and 1,4-dioxane (25 mL) were added to the round bottom flask, the oxygen was removed thoroughly under argon protection. PCy3 (502 mg, 1.79 mmol) and Pd(OAc)2 (201 mg, 0.90 mol) were added, and oxygen was removed thoroughly, and the reaction was conducted at 90° C. for 3 hours. After cooling to room temperature, the reaction solution was poured into water, extracted with ethyl acetate, the organic phases were combined and washed twice with saturated NaCl aqueous solution, dried over anhydrous Na2SO4, the solvent was evaporated to dryness under reduced pressure, and the resultant was separated and purified by column chromatography to obtain a yellow semi-solid product 15-i (1.9 g, yield 80.94%). 1H NMR (400 MHz, chloroform-d) δ 7.42 (s, 1H), 3.90 (s, 2H), 2.64 (s, 2H), 1.29 (s, 6H). 263.2 (M+1).
The synthesis method was the same as Example 4 except that compound 15 was used instead of compound 2. H NMR (400 MHz, DMSO-d6) δ 9.19 (s, 1H), 8.21 (d, J=4.9 Hz, 1H), 8.16 (s, 1H), 7.97 (d, J=2.3 Hz, 1H), 7.25 (dd, J=4.8, 2.2 Hz, 1H), 6.56 (s, 1H), 5.50 (s, 1H), 4.11-4.02 (m, 1H), 3.79 (s, 2H), 3.24-3.12 (m, 1H), 2.81 (s, 2H), 2.04 (s, 3H), 1.88-1.71 (m, 4H), 1.34-1.26 (m, 4H), 1.24 (s, 6H). MS 411.2 (M+1).
The synthesis method was the same as Example 3 except that compound 15 was used instead of compound 2. 1H NMR (400 MHz, DMSO-d6) δ 9.20 (s, 1H), 8.23 (d, J=4.9 Hz, 1H), 8.16 (s, 1H), 7.97 (d, J=2.3 Hz, 1H), 7.25 (dd, J=4.8, 2.2 Hz, 1H), 6.53 (s, 1H), 3.89 (s, 2H), 3.74-3.68 (m, 1H), 3.53 (t, J=5.4 Hz, 2H), 3.27 (s, 3H), 3.26-3.18 (m, 1H), 2.84 (s, 2H), 2.76 (dt, J=6.4, 5.5 Hz, 2H), 2.50-2.35 (m, 1H), 1.81-1.69 (m, 2H), 1.56-1.44 (m, 4H), 1.32 (s, 6H), 1.24-1.09 (m, 2H). MS 427.1 (M+1).
The synthesis method was the same as Example 2 except that 5-chloro-4-bromo-2-aminopyridine was used instead of 4-bromo-2-aminopyridine (compound 1-a). 1H NMR (400 MHz, DMSO-d6) δ 9.25 (s, 1H), 8.26 (s, 1H), 7.84 (brs, 2H), 7.56-7.48 (m, 2H), 7.21 (dd, J=8.4, 6.8 Hz, 1H), 7.08 (dd, J=11.4, 2.5 Hz, 1H), 6.90 (td, J=8.4, 2.5 Hz, 1H), 3.76 (s, 3H), 3.53-3.38 (m, 1H), 3.10-3.07 (m, 1H), 1.94 (d, J=11.2 Hz, 4H), 1.61-1.14 (m, 4H). MS 393.1 (M+1).
The synthesis method was the same as Example 3 except that 5-chloro-4-bromo-2-aminopyridine was used instead of 4-bromo-2-aminopyridine. 1H NMR (400 MHz, methanol-d4) δ 8.22 (s, 1H), 7.18 (dd, J=8.4, 6.6 Hz, 1H), 7.10 (s, 1H), 6.92 (dd, J=11.1, 2.4 Hz, 1H), 6.80 (td, J=8.3, 2.4 Hz, 1H), 3.80 (s, 3H), 3.71-3.57 (m, 3H), 3.43 (s, 3H), 3.22 (t, J=5.0 Hz, 2H), 3.17-3.03 (m, 1H), 2.24-2.11 (m, 5H), 1.66-1.36 (m, 4H). MS 451.1 (M+1).
The synthesis method was the same as Example 3 except that 5-chloro-4-bromo-2-aminopyridine was used instead of 4-bromo-2-aminopyridine, and 2-bromoethanol was used instead of 2-bromoethyl methyl ether. 1H NMR (400 MHz, DMSO-d6) δ 9.22 (s, 1H), 8.27 (s, 1H), 7.56-7.47 (m, 2H), 7.21 (dd, J=8.4, 6.8 Hz, 1H), 7.08 (dd, J=11.4, 2.5 Hz, 1H), 6.91 (m, 1H), 4.80 (t, J=6.4 Hz, 1H), 3.95-3.87 (m, 2H), 3.81 (s, 3H), 3.75-3.67 (m, 1H), 3.33-3.18 (m, 1H), 2.78 (td, J=7.5, 6.6 Hz, 2H), 2.51-2.38 (m, 1H), 1.81-1.60 (m, 4H), 1.24-1.09 (m, 4H). MS 437.1 (M+1).
The synthesis method was the same as Example 3 except that 5-chloro-4-bromo-2-aminopyridine was used instead of 4-bromo-2-aminopyridine, and 2-bromo-1-methoxypropane was used instead of 2-bromoethyl methyl ether. 1H NMR (400 MHz, DMSO-d6) δ 9.21 (s, 1H), 8.26 (s, 1H), 8.16 (s, 1H), 7.71 (dd, J=8.5, 5.0 Hz, 1H), 7.15 (dd, J=8.0, 2.2 Hz, 1H), 7.00 (td, J=8.2, 2.2 Hz, 1H), 6.56 (s, 1H), 3.81 (s, 3H), 3.72 (br s, 1H), 3.47 (d, J=7.0 Hz, 2H), 3.27 (s, 3H), 3.26-3.18 (m, 1H), 2.97-2.89 (m, 1H), 2.43-2.35 (m, 1H), 1.78-1.70 (m, 2H), 1.53-1.44 (m, 2H), 1.19-1.10 (m, 2H), 0.94 (d, J=6.6 Hz, 3H), 0.92-0.85 (m, 2H). MS 465.2 (M+1).
The synthesis method was the same as Example 4 except that 5-chloro-4-bromo-2-aminopyridine was used instead of 4-bromo-2-aminopyridine. 1H NMR (400 MHz, DMSO-d6) δ 9.21 (s, 1H), 8.40 (s, 1H), 8.17 (s, 1H), 7.72 (dd, J=8.5, 5.0 Hz, 1H), 7.15 (dd, J=8.0, 2.2 Hz, 1H), 7.02-6.95 (m, 1H), 6.64 (s, 1H), 5.71 (s, 1H), 4.21-4.06 (m, 1H), 3.81 (s, 3H), 3.36-3.19 (m, 1H), 1.99 (s, 3H), 1.79-1.70 (m, 2H), 1.54-1.45 (m, 2H), 1.34-1.23 (m, 4H). MS 435.1 (M+1).
The synthesis method was the same as Example 3 except that 5-chloro-4-bromo-2-aminopyridine was used instead of 4-bromo-2-aminopyridine, and 2-bromopropane was used instead of 2-bromoethyl methyl ether. 1H NMR (400 MHz, DMSO-d6) δ 9.15 (s, 1H), 8.38 (s, 1H), 8.16 (s, 1H), 7.69 (dd, J=8.5, 5.1 Hz, 1H), 7.15 (d, J=8.0 Hz, 1H), 7.07-6.93 (m, 1H), 6.56 (s, 1H), 3.81 (s, 3H), 3.32-3.18 (m, 1H), 2.87-2.76 (m, 1H), 2.46-2.33 (m, 1H), 1.80-1.68 (m, 2H), 1.56-1.43 (m, 3H), 1.32 (d, J=4.9 Hz, 6H), 1.21-1.09 (m, 4H). MS 435.2 (M+1).
The synthesis method was the same as Example 3 except that 5-chloro-4-bromo-2-aminopyridine was used instead of 4-bromo-2-aminopyridine, and bromocyclopropane was used instead of 2-bromoethyl methyl ether. 1H NMR (400 MHz, DMSO-d6) δ 9.16 (s, 1H), 8.42 (s, 1H), 8.15 (s, 1H), 7.69 (dd, J=8.3, 4.9 Hz, 1H), 7.15 (dd, J=8.0, 2.2 Hz, 1H), 6.98 (td, J=8.2, 2.0 Hz, 1H), 6.59 (s, 1H), 3.80 (s, 3H), 3.35-3.29 (m, 1H), 2.49-2.30 (m, 2H), 1.93-1.66 (m, 5H), 1.42-1.37 (m, 4H), 0.58-0.34 (m, 4H). MS 433.1 (M+1).
The synthesis method was the same as Example 3 except that 5-chloro-4-bromo-2-aminopyridine was used instead of 4-bromo-2-aminopyridine, and 3-bromotetrahydrofuran was used instead of 2-bromoethyl methyl ether. 1H NMR (400 MHz, DMSO-d6) δ 9.18 (s, 1H), 8.26 (s, 1H), 8.13 (s, 1H), 7.82-7.72 (m, 1H), 7.22 (dd, J=8.0, 2.2 Hz, 1H), 7.14-7.01 (m, 1H), 6.61 (s, 1H), 4.07-3.98 (m, 2H), 3.88-3.73 (m, 6H), 3.39-3.26 (m, 1H), 3.10-3.00 (m, 1H), 2.53-2.41 (m, 1H), 2.17-1.92 (m, 4H), 1.72-1.61 (m, 2H), 1.27-1.16 (m, 4H). MS 463.2 (M+1).
The synthesis method was the same as Example 3 except that 5-chloro-4-bromo-2-aminopyridine was used instead of 4-bromo-2-aminopyridine, and 3,3,3-trifluoro-1-bromopropane was used instead of 2-bromoethyl methyl ether. 1H NMR (400 MHz, DMSO-d6) δ 9.21 (s, 1H), 8.28 (s, 1H), 8.16 (s, 1H), 7.71 (dd, J=8.5, 5.0 Hz, 1H), 7.17-6.95 (m, 2H), 6.59 (s, 1H), 3.81 (s, 3H), 3.30-3.18 (m, 1H), 2.59-2.51 (m, 2H), 2.49-2.37 (m, 1H), 2.01-1.88 (m, 2H), 1.80-1.40 (m, 5H), 1.32-1.03 (m, 4H). MS 489.1 (M+1).
The synthesis method was the same as Example 3 except that 5-chloro-4-bromo-2-aminopyridine was used instead of 4-bromo-2-aminopyridine, and (2-bromomethyl) dimethylamine was used instead of 2-bromoethyl methyl ether. 1H NMR (400 MHz, DMSO-d6) δ 9.18 (s, 1H), 8.27 (s, 1H), 8.17 (s, 1H), 7.72 (m, 1H), 7.20-6.98 (m, 2H), 6.55 (br s, 1H), 3.82 (s, 3H), 3.32-3.20 (m, 1H), 2.58 (s, 6H), 2.55-2.37 (m, 5H), 1.81-1.39 (m, 5H), 1.31-1.09 (m, 4H). MS 464.2 (M+1).
The compounds N,N-dimethylglycine (32 mg, 0.31 mmol), HATU (126 mg, 0.33 mmol) and DIPEA (0.21 mL, 1.27 mmol) and anhydrous DMF (3 mL) were added to the round bottom flask. After stirring at room temperature for 10 minutes, compound 18 (100 mg, 0.25 mmol) was added, and the reaction was continued at room temperature for 4 hours, then the reaction was completed. The reaction solution was poured into water, extracted with ethyl acetate. The organic phases were combined and washed with water (3×10 mL) and saturated NaCl aqueous solution (2×10 mL) successively, dried over anhydrous Na2SO4. The solvent was evaporated to dryness under reduced pressure, and the resultant was separated by column chromatography to obtain a light yellow solid 28 (35 mg, yield 28.77%). 1H NMR (400 MHz, DMSO-d6) δ 9.23 (s, 1H), 8.26 (s, 1H), 8.17 (s, 1H), 7.70 (dd, J=8.5, 5.1 Hz, 1H), 7.46 (s, 1H), 7.24-6.96 (m, 2H), 6.55 (br s, 1H), 4.19-4.04 (m, 1H), 3.83 (s, 3H), 3.44 (s, 2H), 3.21-3.16 (m, 1H), 2.62 (s, 6H), 1.82-1.66 (m, 4H), 1.36-1.07 (m, 4H). MS 478.2 (M+1).
The synthesis method was the same as Example 3 except that 4-bromo-5-methylpyridin-2-amine was used instead of 4-bromo-pyridin-2-amine. 1H NMR (400 MHz, DMSO-d6) δ 9.16 (s, 1H), 8.08 (s, 1H), 7.88 (s, 1H), 7.71 (dd, J=8.5, 5.0 Hz, 1H), 7.15 (dd, J=8.0, 2.2 Hz, 1H), 7.00 (td, J=8.2, 2.2 Hz, 1H), 6.54 (br s, 1H), 3.81 (s, 3H), 3.74-3.68 (m, 1H), 3.53 (t, J=5.4 Hz, 2H), 3.27 (s, 3H), 3.26-3.19 (m, 1H), 2.76 (t, J=5.4 Hz, 2H), 2.53-2.39 (m, 1H), 2.36 (s, 3H), 1.80-1.61 (m, 4H), 1.35-1.06 (m, 4H). MS 431.2 (M+1).
The synthesis method was the same as Example 4 except that 4-bromo-5-fluoropyridin-2-amine was used instead of 4-bromo-pyridin-2-amine. 1H NMR (400 MHz, DMSO-d6) δ 9.30 (s, 1H), 8.72 (d, J=8.0 Hz, 1H), 7.95 (d, J=4.9 Hz, 1H), 7.75-7.67 (m, 1H), 7.15 (dd, J=8.0, 2.2 Hz, 1H), 7.00 (td, J=8.2, 2.2 Hz, 1H), 6.56 (br s, 1H), 5.50 (br s, 1H), 4.21-4.05 (m, 1H), 3.81 (s, 3H), 3.36-3.18 (m, 1H), 1.99 (s, 3H), 1.81-1.69 (m, 2H), 1.55-1.43 (m, 2H), 1.37-1.08 (m, 4H). MS 419.1 (M+1).
The synthesis method was the same as Example 4 except that 4-bromo-5-methylpyridin-2-amine was used instead of 4-bromo-pyridin-2-amine. 1H NMR (400 MHz, DMSO-d6) δ 9.18 (s, 1H), 8.05 (s, 1H), 7.85 (s, 1H), 7.68 (dd, J=8.5, 5.0 Hz, 1H), 7.12-6.99 (m, 2H), 6.51 (br s, 1H), 5.46 (s, 1H), 4.17-4.04 (m, 1H), 3.78 (s, 3H), 3.30-3.16 (m, 1H), 2.33 (s, 3H), 1.96 (s, 3H), 1.74-1.65 (m, 2H), 1.49-1.37 (m, 2H), 1.30-1.06 (m, 4H). MS 415.2 (M+1).
The synthesis method was the same as Example 4 except that 4-bromo-5-cyanopyridin-2-amine was used instead of 4-bromo-pyridin-2-amine. 1H NMR (400 MHz, DMSO-d6) δ 9.34 (s, 1H), 9.01 (s, 1H), 8.40 (s, 1H), 7.71 (dd, J=8.5, 5.0 Hz, 1H), 7.15 (dd, J=8.0, 2.2 Hz, 1H), 7.00 (td, J=8.2, 2.2 Hz, 1H), 6.56 (s, 1H), 5.50 (s, 1H), 4.21-4.01 (m, 1H), 3.81 (s, 3H), 3.41-3.12 (m, 1H), 1.99 (s, 3H), 1.83-1.62 (m, 2H), 1.57-1.37 (m, 2H), 1.37-1.08 (m, 4H). MS 426.2 (M+1).
The synthesis method was the same as Example 1 except that 6-fluoropyridin-3-amine was used instead of N-Boc-trans-1,4-cyclohexanediamine (compound 1-c). 1H NMR (600 MHz, chloroform-d) δ 12.11 (s, 1H), 8.30 (s, 1H), 8.29-8.22 (m, 2H), 7.37 (brs, 1H), 7.30 (dd, J=8.4, 6.6 Hz, 1H), 7.12 (dd, J=5.4, 1.5 Hz, 1H), 6.98-6.88 (m, 2H), 6.84-6.70 (m, 2H), 3.85 (s, 3H). MS 357.1 (M+1).
The synthesis method was the same as Example 3 except that N-Boc-1,3-propanediamine was used instead of N-Boc-trans-1,4-cyclohexanediamine. 1H NMR (400 MHz, DMSO-d6) δ 9.21 (s, 1H), 8.23 (d, J=4.9 Hz, 1H), 7.97 (d, J=2.3 Hz, 1H), 7.71 (dd, J=8.4, 5.0 Hz, 1H), 7.25 (dd, J=4.8, 2.2 Hz, 1H), 7.19-7.07 (m, 2H), 7.05-6.93 (m, 1H), 3.81 (s, 3H), 3.61-3.47 (m, 5H), 3.27 (s, 3H), 2.82-2.69 (m, 2H), 2.56-2.44 (m, 2H), 1.99 (p, J=6.0 Hz, 2H). MS 377.2 (M+1).
The synthesis method was the same as Example 2 except that N-Boc-trans-1,3-cyclobutanediamine was used instead of N-Boc-trans-1,4-cyclohexanediamine. 1H NMR (400 MHz, DMSO-d6) δ 9.18 (s, 1H), 8.25 (d, J=4.9 Hz, 1H), 7.99 (d, J=2.3 Hz, 1H), 7.73 (dd, J=8.4, 4.8 Hz, 1H), 7.27 (dd, J=4.8, 2.2 Hz, 1H), 7.17 (dd, J=8.0, 2.1 Hz, 1H), 7.02 (td, J=8.2, 2.2 Hz, 1H), 6.56 (d, J=10.3 Hz, 1H), 4.40-4.25 (m, 1H), 3.83 (s, 3H), 3.11 (ttd, J=9.2, 7.0, 2.3 Hz, 1H), 2.54 (dt, J=12.4, 9.3 Hz, 2H), 2.43 (br s, 2H), 2.37-2.25 (m, 2H). MS 331.1 (M+1).
The synthesis method was the same as Example 1 except that (1r,3r)-3-aminocyclobutan-1-ol was used instead of N-Boc-trans-1,4-cyclohexanediamine. 1H NMR (400 MHz, DMSO-d6) δ 9.21 (s, 1H), 8.23 (d, J=4.9 Hz, 1H), 7.97 (d, J=2.3 Hz, 1H), 7.71 (dd, J=8.4, 5.0 Hz, 1H), 7.25 (dd, J=4.8, 2.2 Hz, 1H), 7.15 (dd, J=8.0, 2.2 Hz, 1H), 7.00 (td, J=8.2, 2.2 Hz, 1H), 6.54 (d, J=10.3 Hz, 1H), 4.52-4.38 (m, 1H), 3.81 (s, 3H), 3.45 (d, J=6.8 Hz, 1H), 3.40-3.28 (m, 1H), 2.67-2.54 (m, 2H), 2.42-2.28 (m, 2H). MS 332.1 (M+1).
The synthesis method was the same as Example 2 except that tert-butyl 4-aminoazepane-1-carboxylate was used instead of N-Boc-trans-1,4-cyclohexanediamine. 1H NMR (400 MHz, methanol-d4) δ 8.18 (dd, J=5.5, 0.8 Hz, 1H), 7.37 (dd, J=8.5, 6.6 Hz, 1H), 7.20 (s, 1H), 7.10 (dd, J=5.4, 1.5 Hz, 1H), 6.93 (dd, J=11.1, 2.5 Hz, 1H), 6.80 (td, J=8.3, 2.4 Hz, 1H), 4.04-3.96 (m, 1H), 3.85 (s, 3H), 3.44-3.33 (m, 2H), 3.29-3.19 (m, 2H), 2.35-2.13 (m, 2H), 2.10-1.97 (m, 2H), 1.96-1.82 (m, 2H). MS 359.2 (M+1).
Step 1: compound 38-a (1.0 g, 5.78 mmol), 38-b (1.47 g, 8.67 mmol), Pd(OAc)2 (130 mg, 0.578 mml), X-phos (551 mg, 1.16 mmol), K2CO3 (2.0 g, 14.45 mmol) and THF/H2O (40/10 mL) were added into the round bottom flask, reacted at 85° C. for 3 hours under argon protection. After the reaction was completed, it was cooled to room temperature, the reaction solution was poured into water, and extracted with ethyl acetate. The aqueous phase was repeatedly extracted with ethyl acetate for 2-3 times. The organic phases were combined and washed 3 times with saturated NaCl aqueous solution. After drying with anhydrous Na2SO4, the solvent was evaporated to dryness under reduced pressure, and the resultant was purified by column chromatography to obtain white solid 38-c (896 mg, yield 71.1%). 1H NMR (400 MHz, chloroform-d) δ 8.01 (d, J=5.3 Hz, 1H), 7.52-7.44 (m, 1H), 7.29-7.26 (m, 1H), 6.81-6.78 (m, 1H), 6.76-6.70 (m, 2H), 4.82 (br s, 2H), 3.82 (s, 3H). MS 219.1 (M+1).
Step 2: compound 38-d (280 mg, 1.28 mmol) and anhydrous DCM (10 mL) were added into a round bottom flask, DCM solution (10 mL) of compound 38-c was added dropwise in an ice bath, and then anhydrous Et3N (0.36 mL, 2.57 mmol) was added dropwise, and the reaction was stopped after continuing to stir for 1 hour. The solvent was evaporated to dryness under reduced pressure to obtain dark brown solid 38-e, which could be directly used in the next reaction without further purification.
Step 3: intermediate 38-e obtained in step 2, compound 38-f (275 mg, 1.28 mmol), anhydrous Et3N (0.36 mL, 2.57 mmol) and anhydrous toluene (20 mL) were added into the round bottom flask, and heated to reflux overnight. After the reaction was completed, it was cooled to room temperature, the reaction solution was poured into water, and extracted with ethyl acetate. The aqueous phase was repeatedly extracted with ethyl acetate for 2-3 times. The organic phases were combined and washed 3 times with saturated NaCl aqueous solution. After drying with anhydrous Na2SO4, the solvent was evaporated to dryness under reduced pressure, and the resultant was purified by column chromatography to obtain white solid 38-g (89 mg, yield 14.6%). 1H NMR (400 MHz, chloroform-d) δ 11.66 (d, J=7.9 Hz, 1H), 8.30 (s, 1H), 8.17 (d, J=5.4 Hz, 1H), 7.30-7.24 (m, 1H), 7.07 (d, J=4.9 Hz, 1H), 6.87 (s, 1H), 6.80-6.68 (m, 2H), 4.49-4.38 (m, 1H), 4.33-4.16 (m, 1H), 3.83 (s, 3H), 3.57-3.41 (m, 1H), 2.33-2.20 (m, 2H), 2.12-1.99 (m, 2H), 1.45 (s, 9H), 1.36-1.16 (m, 4H). MS 475.2 (M+1).
Step 4: compound 38-g (79 mg, 0.167 mmol) and dichloromethane (5 mL) were added to the round bottom flask, 4.0 M HCl dioxane solution (0.5 mL) was added dropwise thereto, and stirred at room temperature overnight. After the reaction was completed, the solvent was evaporated to dryness under reduced pressure, and then 1 M NaOH aqueous solution was added dropwise to adjust the pH to weak alkalinity. The solvent was evaporated to dryness under reduced pressure and the resultant was separated by column chromatography to obtain a white solid 38 (57.8 mg, 57.8%). 1H NMR (400 MHz, DMSO-d6) δ 11.68 (d, J=7.6 Hz, 1H), 10.56 (s, 1H), 8.19 (d, J=5.4 Hz, 1H), 7.79 (s, 2H), 7.37 (dd, J=8.6, 6.8 Hz, 1H), 7.33 (d, J=1.5 Hz, 1H), 7.14 (dd, J=5.5, 1.5 Hz, 1H), 7.09 (dd, J=11.4, 2.5 Hz, 1H), 6.91 (td, J=8.4, 2.5 Hz, 1H), 4.09 (s, 1H), 3.81 (s, 3H), 3.05 (s, 1H), 2.14-1.98 (m, 4H), 1.50-1.34 (m, 4H). MS 375.1 (M+1).
Step 1: compound 39-b (939 mg, 2.87 mmol), DPPA (1.03 g, 3.74 mmol), anhydrous Et3N (1.2 mL, 8.62 mmol) and anhydrous toluene (5 mL) were added into the microwave tube. The reaction was conducted by microwave at 110° C. for 5 minutes, compound 39-a (500 mg, 2.87 mmol) was added, and the reaction was continued by microwave at 110° C. for 30 minutes. After the reaction was completed, it was cooled to room temperature, the reaction solution was poured into water, and extracted with ethyl acetate. The aqueous phase was repeatedly extracted with ethyl acetate for 2-3 times. The organic phases were combined and washed 3 times with saturated NaCl aqueous solution. After drying with anhydrous Na2SO4, the solvent was evaporated to dryness under reduced pressure, and the resultant was purified by column chromatography to obtain white solid 39-c (179 mg, yield 15.0%). 1H NMR (400 MHz, DMSO-d6) δ 8.98 (s, 1H), 8.80 (s, 1H), 8.70 (s, 1H), 7.47 (s, 1H), 4.52-4.37 (m, 1H), 3.90 (s, 3H), 3.78-3.67 (m, 1H), 3.56-3.40 (m, 1H), 2.19-1.95 (m, 4H), 1.45 (s, 9H), 1.33-1.17 (m, 4H). MS 414.1 (M+1).
Step 2: compound 39-c (100 mg, 0.27 mmol), 39-d (82 mg, 0.48 mmol), Pd(OAc)2 (6 mg, 0.027 mml), X-phos (26 mg, 0.054 mmol), K2CO3 (83.40 mg, 0.60 mmol) and THF/H2O (8/2 mL) were added into the round bottom flask, reacted at 85° C. for 3 hours under argon protection.
After the reaction was completed, it was cooled to room temperature, the reaction solution was poured into water, and extracted with ethyl acetate. The aqueous phase was repeatedly extracted with ethyl acetate for 2-3 times. The organic phases were combined and washed 3 times with saturated NaCl aqueous solution. After drying with anhydrous Na2SO4, the solvent was evaporated to dryness under reduced pressure, and the resultant was purified by column chromatography to obtain white solid 39 (92.05 mg, yield 83.0%). 1H NMR (400 MHz, chloroform-d) δ 9.04 (br s, 1H), 8.81 (s, 1H), 8.05 (dd, J=8.8, 6.9 Hz, 1H), 7.98 (s, 1H), 7.38 (s, 1H), 6.80 (td, J=8.2, 2.4 Hz, 1H), 6.73 (dd, J=10.8, 2.4 Hz, 1H), 4.43 (d, J=8.1 Hz, 1H), 3.90 (s, 3H), 3.71 (m, 1H), 3.49 (s, 1H), 2.19-2.01 (m, 4H), 1.45 (s, 9H), 1.33-1.14 (m, 4H). MS 460.2 (M+1).
Compound 39 (82 mg, 0.178 mmol) and DCM (5 mL) were added to the round-bottomed flask, 4.0 M HCl dioxane solution (0.5 mL) was added dropwise thereto, and stirred at room temperature overnight. After the reaction was completed, the solvent was evaporated to dryness under reduced pressure to obtain a white solid. Et3N (124 μL, 0.89 mmol) and anhydrous DCM (3 mL) were added to the above round-bottom flask, acetic anhydride (15 μL, 0.27 mmol) was added dropwise thereto, and the reaction was conducted at room temperature for 2 hours. After the reaction was completed, the solvent was evaporated to dryness under reduced pressure, and the resultant was separated by column chromatography to obtain a white solid 40 (60 mg, yield 83.76%). 1H NMR (400 MHz, DMSO-d6) δ 9.24 (s, 1H), 8.34 (d, J=1.5 Hz, 1H), 7.86 (br s, 1H), 7.71 (dd, J=9.4, 5.0 Hz, 1H), 7.15 (dd, J=8.0, 2.2 Hz, 1H), 7.10 (d, J=1.3 Hz, 1H), 7.05-6.95 (m, 1H), 5.53 (s, 1H), 4.22-4.03 (m, 1H), 3.81 (s, 3H), 3.43-3.14 (m, 1H), 1.99 (s, 3H), 1.95-1.68 (m, 4H), 1.35-1.07 (m, 4H). MS 402.1 (M+1).
The synthesis method was the same as Example 40 except that 4-bromopyrimidin-2-amine was used instead of 6-chloropyrimidin-4-amine (39-a). 1H NMR (400 MHz, DMSO-d6) δ 9.27 (s, 1H), 8.16 (d, J=4.8 Hz, 1H), 7.75-7.67 (m, 2H), 7.15 (dd, J=8.0, 2.2 Hz, 1H), 7.05-6.95 (m, 1H), 6.56 (s, 1H), 5.52 (s, 1H), 4.19-4.03 (m, 1H), 3.81 (s, 3H), 3.35-3.13 (m, 1H), 1.99 (s, 3H), 1.92-1.45 (m, 2H), 1.35-1.12 (m, 4H). MS 402.1 (M+1).
The synthesis method was the same as Example 2 except that 5-chloro-4-bromopyridin-2-amine was used instead of 4-bromopyridin-2-amine (1-a), and 1,5-dimethyl-1H-pyrazole-4-boronic acid pinacol ester was used instead of 4-fluoro-2-methoxyphenylboronic acid (1-e). 1H NMR (400 MHz, DMSO-d6) δ 9.21 (s, 1H), 8.25 (s, 1H), 7.97 (s, 2H), 7.56-7.41 (m, 3H), 3.79 (s, 3H), 3.55-3.37 (m, 1H), 3.05-2.89 (m, 1H), 2.25 (s, 3H), 1.93-1.61 (m, 4H), 1.53-1.10 (m, 4H). MS 363.2 (M+1).
The synthesis method was the same as Example 4 except that 5-chloro-4-bromopyridin-2-amine was used instead of 4-bromopyridin-2-amine, and 1,5-dimethyl-1H-pyrazole-4-boronic acid pinacol ester was used instead of 4-fluoro-2-methoxyphenylboronic acid. 1H NMR (400 MHz, DMSO-d6) δ 9.20 (s, 1H), 8.25 (s, 1H), 7.97 (s, 1H), 7.56-7.41 (m, 2H), 5.60 (s, 1H), 4.11-3.92 (m, 1H), 3.79 (s, 3H), 3.24-3.02 (m, 1H), 2.26 (s, 3H), 1.99 (s, 3H), 1.90-1.62 (m, 4H), 1.58-1.13 (m, 4H). MS 405.1 (M+1).
The synthesis method was the same as Example 15 except that 5-chloro-4-bromopyridin-2-amine was used instead of 4-bromo-pyridin-2-amine. 1H NMR (400 MHz, methanol-d4) δ 8.20 (s, 1H), 8.01 (s, 1H), 7.37 (s, 1H), 3.97 (s, 2H), 3.72-3.56 (m, 1H), 3.35 (s, 1H), 2.95 (s, 2H), 2.23-1.86 (m, 4H), 1.47-1.37 (m, 4H), 1.34 (s, 6H). MS 403.2 (M+1).
The synthesis method was the same as Example 15 except that 5-chloro-4-bromopyridin-2-amine was used instead of 4-bromopyridin-2-amine, and (1r,4r)-4-aminocyclohexan-1-ol was used instead of N-Boc-trans-1,4-cyclohexanediamine (15-k). 1H NMR (400 MHz, DMSO-d6) δ 9.25 (s, 1H), 8.46 (s, 1H), 8.16 (s, 1H), 7.96 (s, 1H), 6.54 (s, 1H), 3.95 (s, 2H), 3.88-3.75 (m, 1H), 3.32-3.17 (m, 1H), 2.87 (s, 2H), 2.23-1.90 (m, 2H), 1.80-1.64 (m, 4H), 1.55 (d, J=8.6 Hz, 1H), 1.53-1.43 (m, 2H), 1.31 (s, 6H). MS 404.1 (M+1).
The synthesis method was the same as Example 3 except that compound 44 was used instead of compound 2. 1H NMR (400 MHz, chloroform-d) δ 8.77 (s, 1H), 8.40 (s, 1H), 8.14 (s, 1H), 7.96 (s, 1H), 6.92 (s, 1H), 3.95 (s, 2H), 3.79-3.67 (m, 1H), 3.57 (t, J=5.1 Hz, 2H), 3.35 (s, 3H), 2.91 (d, J=5.3 Hz, 2H), 2.89 (s, 2H), 2.63 (br s, 1H), 2.22-1.95 (m, 4H), 1.57-1.34 (m, 4H), 1.32 (s, 6H). MS 461.2 (M+1).
The synthesis method was the same as Example 4 except that compound 44 was used instead of compound 2. 1H NMR (400 MHz, chloroform-d) δ 8.71 (s, 1H), 8.62 (s, 1H), 8.16 (s, 1H), 7.92 (s, 1H), 6.97 (s, 1H), 5.66 (d, J=8.1 Hz, 1H), 3.95 (s, 2H), 3.76-3.61 (m, 2H), 2.87 (s, 2H), 2.14-2.00 (m, 4H), 1.98 (s, 3H), 1.48-1.35 (m, 2H), 1.32 (s, 6H), 1.30-1.22 (m, 2H). MS 445.1 (M+1).
The synthesis method was the same as Example 28 except that compound 44 was used instead of compound 18. 1H NMR (600 MHz, acetone-d6) δ 8.57 (s, 1H), 8.19 (s, 1H), 7.98 (s, 2H), 7.57 (s, 1H), 7.25 (d, J=8.4 Hz, 1H), 3.95 (s, 2H), 3.77-3.70 (m, 1H), 3.68-3.60 (m, 1H), 2.97 (s, 2H), 2.91 (s, 2H), 2.29 (s, 6H), 1.95-1.90 (m, 2H), 1.49-1.35 (m, 6H), 1.34 (s, 6H). MS 488.3 (M+1).
The synthesis method was the same as Example 28 except that compound 44 was used instead of compound 18, and cyclopropanecarboxylic acid was used instead of N,N-dimethylglycine. 1H NMR (400 MHz, DMSO-d6) δ 9.24 (s, 1H), 8.46 (s, 1H), 8.16 (s, 1H), 7.96 (s, 1H), 7.44 (s, 1H), 6.54 (d, J=11.9 Hz, 1H), 4.19-4.03 (m, 1H), 3.93 (s, 2H), 3.32-3.13 (m, 1H), 2.87 (s, 2H), 1.80-1.64 (m, 3H), 1.55-1.48 (m, 2H), 1.41-1.35 (m, 4H), 1.30 (s, 6H), 1.00-0.84 (m, 4H). MS 471.1 (M+1).
The synthesis method was the same as Example 28 except that compound 44 was used instead of compound 18, and oxetane-3-carboxylic acid was used instead of N,N-dimethylglycine. 1H NMR (400 MHz, DMSO-d6) δ 9.14 (s, 1H), 8.50 (s, 1H), 8.24 (s, 1H), 7.97 (s, 1H), 7.44 (s, 1H), 6.95 (d, J=11.1 Hz, 1H), 5.09 (dd, J=12.4, 7.2 Hz, 2H), 4.84 (dd, J=12.4, 7.0 Hz, 2H), 4.17-4.04 (m, 1H), 3.94 (s, 2H), 3.73-3.62 (m, 1H), 3.31-3.16 (m, 1H), 2.87 (s, 2H), 1.80-1.65 (m, 4H), 1.42-1.30 (m, 4H), 1.26 (s, 6H). MS 487.2 (M+1).
The synthesis method was the same as Example 16 except that the compound 5-fluoro-4-bromopyridin-2-amine was used instead of 4-bromo-pyridin-2-amine. 1H NMR (400 MHz, DMSO-d6) δ 9.21 (s, 1H), 8.72 (d, J=8.0 Hz, 1H), 8.16 (s, 1H), 7.98 (d, J=4.9 Hz, 1H), 7.47 (s, 1H), 5.65 (d, J=11.2 Hz, 1H), 4.18-4.06 (m, 1H), 3.97 (s, 2H), 3.33-3.15 (m, 1H), 2.83 (s, 2H), 1.99 (s, 3H), 1.81-1.65 (m, 4H), 1.55-1.36 (m, 4H), 1.31 (s, 6H). MS 429.1 (M+1).
The synthesis method was the same as Example 16 except that the compound 5-methyl-4-bromopyridin-2-amine was used instead of 4-bromo-pyridin-2-amine. 1H NMR (400 MHz, DMSO-d6) δ 9.20 (s, 1H), 8.46 (s, 1H), 8.14 (s, 1H), 7.93 (s, 1H), 7.40 (s, 1H), 6.49 (br s, 1H), 3.93 (s, 2H), 3.32-3.13 (m, 2H), 2.87 (s, 2H), 2.51 (s, 1H), 1.80-1.60 (m, 4H), 1.47-1.29 (m, 4H), 1.25 (s, 6H). MS 425.2 (M+1).
The synthesis method was the same as Example 16 except that the compound 5-cyclopropyl-4-bromopyridin-2-amine was used instead of 4-bromo-pyridin-2-amine. 1H NMR (400 MHz, DMSO-d6) δ 9.21 (s, 1H), 8.16 (s, 1H), 8.08 (s, 1H), 7.88 (s, 1H), 6.54 (d, J=11.9 Hz, 1H), 5.49 (brs, 1H), 4.19-4.03 (m, 1H), 3.93 (s, 2H), 3.33-3.08 (m, 2H), 2.79 (s, 2H), 1.99 (s, 3H), 1.83-1.65 (m, 4H), 1.55-1.40 (m, 4H), 1.31 (s, 6H), 0.76-0.39 (m, 4H). MS 451.3 (M+1).
Compound 44 (60 mg, 0.149 mmol), DIPEA (62 μL, 0.372 mmol) and anhydrous DMF (1 mL) were added to the round bottomed flask, and acetyl chloride-d3 (13 μL, 0.179 mmol) was added dropwise under ice bath, the resultant was reacted at room temperature for 2 hours. After the reaction was completed, methanol was added to quench the reaction, the solvent was evaporated to dryness under reduced pressure, and the resultant was separated by column chromatography to obtain a white solid 54 (16 mg, 23.98%). 1H NMR (400 MHz, DMSO-d6) δ 9.23 (s, 1H), 8.46 (s, 1H), 8.16 (s, 1H), 7.93 (s, 1H), 7.43 (d, J=11.4 Hz, 1H), 6.54 (d, J=11.9 Hz, 1H), 4.18-4.04 (m, 1H), 3.95 (s, 2H), 3.31-3.16 (m, 1H), 2.82 (s, 2H), 1.80-1.62 (m, 4H), 1.44-1.27 (m, 2H), 1.23 (s, 6H). MS 448.2 (M+1).
The synthesis method was the same as Example 17 except that 5-chloro-4-bromopyridin-2-amine was used instead of 4-bromopyridin-2-amine, and 2-bromo-1-methoxypropane was used instead of 1-bromo-2-methoxyethane. 1H NMR (400 MHz, DMSO-d6) δ 9.21 (s, 1H), 8.46 (s, 1H), 8.15 (s, 1H), 7.93 (s, 1H), 6.54 (d, J=11.9 Hz, 1H), 4.70 (dd, J=10.3, 8.1 Hz, 1H), 3.94 (s, 2H), 3.47 (d, J=6.9 Hz, 2H), 3.27 (s, 3H), 3.26-3.18 (m, 1H), 2.99-2.87 (m, 1H), 2.83 (s, 2H), 2.40-2.34 (m, 1H), 1.83-1.70 (m, 2H), 1.65-1.44 (m, 6H), 1.21 (s, 6H), 0.98 (d, J=6.6 Hz, 3H). MS 475.1 (M+1).
The synthesis method was the same as Example 17 except that 5-chloro-4-bromopyridin-2-amine was used instead of 4-bromopyridin-2-amine, and 2-bromo-N,N-dimethylethan-1-amine was used instead of 1-bromo-2-methoxyethane. 1H NMR (400 MHz, DMSO-d6) δ 9.19 (s, 1H), 8.44 (s, 1H), 8.16 (s, 1H), 7.95 (s, 1H), 6.54 (br s, 1H), 3.95 (s, 2H), 3.32-3.15 (m, 1H), 2.87 (s, 2H), 2.67 (s, 6H), 2.55-2.46 (m, 2H), 2.45-2.36 (m, 4H), 1.79-1.67 (m, 4H), 1.54-1.42 (m, 4H), 1.25 (s, 6H). MS 474.1 (M+1).
The synthesis method was the same as Example 17 except that 5-chloro-4-bromopyridin-2-amine was used instead of 4-bromopyridin-2-amine, and 1-bromo-2-(trifluoromethoxy)ethane was used instead of 1-bromo-2-methoxyethane. 1H NMR (400 MHz, DMSO-d6) δ 9.20 (s, 1H), 8.46 (s, 1H), 8.16 (s, 1H), 7.93 (s, 1H), 6.64 (s, 1H), 3.70 (br s, 1H), 3.97 (s, 2H), 3.53 (t, J=4.8 Hz, 2H), 3.33-3.15 (m, 1H), 2.89 (s, 2H), 2.81-2.72 (m, 2H), 2.49-2.42 (m, 1H), 1.80-1.65 (m, 4H), 1.41-1.27 (m, 4H), 1.23 (s, 6H). MS 515.2 (M+1).
The synthesis method was the same as Example 17 except that 5-chloro-4-bromopyridin-2-amine was used instead of 4-bromopyridin-2-amine, and 1-bromo-2-(methoxy-d3)ethane was used instead of 1-bromo-2-methoxyethane. 1H NMR (400 MHz, DMSO-d6) δ 9.18 (s, 1H), 8.44 (s, 1H), 8.16 (s, 1H), 7.93 (s, 1H), 6.54 (d, J=11.9 Hz, 1H), 3.93 (s, 2H), 3.75-3.64 (m, 1H), 3.51 (t, J=5.4 Hz, 2H), 3.32-3.15 (m, 1H), 2.76 (dt, J=6.4, 5.5 Hz, 2H), 2.49-2.42 (m, 1H), 2.41 (s, 2H), 1.86-1.64 (m, 4H), 1.54-1.34 (m, 4H), 1.30 (s, 6H). MS 464.3 (M+1).
The synthesis method was the same as Example 17 except that 5-chloro-4-bromopyridin-2-amine was used instead of 4-bromopyridin-2-amine, and bromoethane was used instead of 1-bromo-2-methoxyethane. 1H NMR (400 MHz, chloroform-d) δ 8.84 (s, 1H), 8.70 (s, 1H), 8.12 (s, 1H), 7.99 (s, 1H), 7.16 (s, 1H), 3.93 (s, 2H), 3.81-3.65 (m, 1H), 3.01-2.81 (m, 5H), 2.26-2.11 (m, 4H), 1.65-1.43 (m, 4H), 1.36 (t, J=7.2 Hz, 3H), 1.32 (s, 6H). MS 431.2 (M+1).
The synthesis method was the same as Example 17 except that 5-chloro-4-bromopyridin-2-amine was used instead of 4-bromopyridin-2-amine, and 2-bromopropane was used instead of 1-bromo-2-methoxyethane. 1H NMR (400 MHz, DMSO-d6) δ 9.15 (s, 1H), 8.46 (s, 1H), 8.13 (s, 1H), 7.91 (s, 1H), 6.54 (s, 1H), 3.94 (s, 2H), 3.24-3.08 (m, 1H), 2.87 (s, 2H), 2.80 (m, 1H), 2.41-2.34 (m, 1H), 1.83-1.67 (m, 5H), 1.54-1.42 (m, 4H), 1.32 (d, J=4.9 Hz, 6H), 1.25 (s, 6H). MS 445.2 (M+1).
The synthesis method was the same as Example 17 except that 5-chloro-4-bromopyridin-2-amine was used instead of 4-bromopyridin-2-amine, and 1-bromo-2-fluoroethane was used instead of 1-bromo-2-methoxyethane. 1H NMR (400 MHz, DMSO-d6) δ 9.20 (s, 1H), 8.44 (s, 1H), 8.18 (s, 1H), 7.90 (s, 1H), 6.86 (d, J=11.9 Hz, 1H), 4.68-4.46 (m, 2H), 3.97 (s, 2H), 3.30-3.19 (m, 1H), 2.84 (s, 2H), 2.82-2.64 (m, 2H), 2.50-2.42 (m, 1H), 1.81-1.62 (m, 5H), 1.52-1.34 (m, 4H), 1.20 (s, 6H). MS 449.2 (M+1).
The synthesis method was the same as Example 17 except that 5-chloro-4-bromopyridin-2-amine was used instead of 4-bromopyridin-2-amine, and 2-bromoethanol was used instead of 1-bromo-2-methoxyethane. 1H NMR (400 MHz, DMSO-d6) δ 9.18 (s, 1H), 8.46 (s, 1H), 8.16 (s, 1H), 7.87 (s, 1H), 6.56 (br s, 1H), 4.80 (t, J=6.4 Hz, 1H), 3.95 (s, 2H), 3.90 (td, J=7.5, 6.3 Hz, 2H), 3.76-3.64 (m, 1H), 3.32 (br s, 1H), 2.86 (s, 2H), 2.83-2.72 (m, 2H), 2.49-2.42 (m, 1H), 1.80-1.62 (m, 4H), 1.55-1.33 (m, 4H), 1.22 (s, 6H). MS 447.1 (M+1).
The synthesis method was the same as Example 17 except that 5-chloro-4-bromopyridin-2-amine was used instead of 4-bromopyridin-2-amine, and 3-bromooxetane was used instead of 1-bromo-2-methoxyethane. 1H NMR (400 MHz, DMSO-d6) δ 9.23 (s, 1H), 8.47 (s, 1H), 8.16 (s, 1H), 7.90 (s, 1H), 6.59 (br s, 1H), 5.02-4.71 (m, 4H), 3.96 (s, 2H), 3.91-3.80 (m, 1H), 3.74-3.65 (m, 1H), 3.30-3.16 (m, 1H), 2.89 (s, 2H), 2.40-2.33 (m, 1H), 1.81-1.60 (m, 4H), 1.54-1.32 (m, 4H), 1.24 (s, 6H). MS 459.2 (M+1).
The synthesis method was the same as Example 15-m except that 5-chloro-4-bromopyridin-2-amine was used instead of 4-bromopyridin-2-amine and N-Boc-cis-1,4-cyclohexanediamine was used instead of N-Boc-trans-1,4-cyclohexanediamine. 1H NMR (400 MHz, chloroform-d) δ 9.34 (s, 1H), 8.76 (s, 1H), 8.18 (s, 1H), 8.02 (s, 1H), 6.81 (s, 1H), 4.55 (d, J=7.7 Hz, 1H), 4.02 (s, 1H), 3.97 (s, 2H), 3.58 (s, 1H), 2.91 (s, 2H), 1.82-1.67 (m, 6H), 1.62-1.49 (m, 2H), 1.46 (s, 9H), 1.34 (s, 6H). MS 503.3 (M+1).
The synthesis method was the same as Example 15 except that 5-chloro-4-bromopyridin-2-amine was used instead of 4-bromopyridin-2-amine and N-Boc-cis-1,4-cyclohexanediamine was used instead of N-Boc-trans-1,4-cyclohexanediamine. 1H NMR (400 MHz, chloroform-d) δ 9.44 (s, 1H), 9.38 (s, 1H), 8.18 (s, 1H), 8.02 (s, 1H), 6.94 (s, 1H), 4.12-4.01 (m, 1H), 3.95 (s, 2H), 2.91 (s, 2H), 2.86-2.75 (m, 1H), 1.96-1.51 (m, 8H), 1.33 (s, 6H). MS 403.1 (M+1).
The synthesis method was the same as Example 17 except that 5-chloro-4-bromopyridin-2-amine was used instead of 4-bromopyridin-2-amine and N-Boc-cis-1,4-cyclohexanediamine was used instead of N-Boc-trans-1,4-cyclohexanediamine. 1H NMR (400 MHz, chloroform-d) δ 9.24 (s, 1H), 9.15 (s, 1H), 8.18 (s, 1H), 8.01 (s, 1H), 6.99 (s, 1H), 4.05 (s, 1H), 3.95 (s, 2H), 3.56 (t, J=5.1 Hz, 2H), 3.36 (s, 3H), 2.92 (s, 2H), 2.90-2.85 (m, 2H), 2.66 (s, 1H), 2.54 (s, 1H), 1.86-1.70 (m, 4H), 1.68-1.42 (m, 4H), 1.33 (s, 6H). MS 461.2 (M+1).
The synthesis method was the same as Example 16 except that 5-chloro-4-bromopyridin-2-amine was used instead of 4-bromopyridin-2-amine and N-Boc-cis-1,4-cyclohexanediamine was used instead of N-Boc-trans-1,4-cyclohexanediamine. 1H NMR (400 MHz, chloroform-d) δ 9.75 (s, 1H), 9.50 (s, 1H), 8.17 (s, 1H), 8.05 (s, 1H), 6.91 (s, 1H), 5.54 (d, J=7.9 Hz, 1H), 4.07 (s, 1H), 3.96 (s, 2H), 3.92-3.81 (m, 1H), 2.92 (s, 2H), 2.00 (s, 3H), 1.90-1.83 (m, 4H), 1.78-1.69 (m, 2H), 1.54-1.37 (m, 2H), 1.33 (s, 6H). MS 445.2 (M+1).
The synthesis method was the same as Example 15 except that 5-chloro-4-bromopyridin-2-amine was used instead of 4-bromopyridin-2-amine and N-Boc-piperidin-4-amine was used instead of N-Boc-trans-1,4-cyclohexanediamine. 1H NMR (400 MHz, DMSO-d6) δ 9.14 (s, 1H), 8.50 (s, 1H), 8.24 (s, 1H), 7.97 (s, 1H), 7.73 (d, J=11.1 Hz, 2H), 3.94 (s, 2H), 3.84-3.76 (m, 1H), 3.22 (d, J=12.6 Hz, 2H), 2.97 (t, J=11.9 Hz, 2H), 2.87 (s, 2H), 2.10-1.92 (m, 2H), 1.58-1.46 (m, 2H), 1.26 (s, 6H). MS 389.2 (M+1).
The synthesis method was the same as Example 15 except that 5-chloro-4-bromopyridin-2-amine was used instead of 4-bromopyridin-2-amine and N-Boc-azepan-4-amine was used instead of N-Boc-trans-1,4-cyclohexanediamine. 1H NMR (400 MHz, DMSO-d6) δ 9.18 (s, 1H), 8.46 (s, 1H), 8.16 (s, 1H), 7.94 (s, 1H), 6.54 (d, J=10.8 Hz, 1H), 3.93 (s, 2H), 3.47-3.35 (m, 1H), 3.34-3.11 (m, 4H), 2.89 (s, 2H), 276-2.68 (m, 1H), 1.93-1.32 (m, 6H), 1.26 (s, 6H). MS 403.1 (M+1).
The synthesis method was the same as Example 15 except that 5-chloro-4-bromopyridin-2-amine was used instead of 4-bromopyridin-2-amine and N-Boc-1,4-cycloheptanediamine was used instead of N-Boc-trans-1,4-cyclohexanediamine. 1H NMR (400 MHz, DMSO-d6) δ 9.23 (s, 1H), 8.46 (s, 1H), 8.14 (s, 1H), 7.95 (s, 1H), 6.54 (d, J=11.0 Hz, 1H), 3.95 (s, 2H), 3.47-3.34 (m, 1H), 2.87 (s, 2H), 2.50-2.42 (m, 1H), 1.87-1.68 (m, 2H), 1.62-1.56 (m, 4H), 1.41-1.26 (m, 6H), 1.20 (s, 6H). MS 417.2 (M+1).
The synthesis method was the same as Example 15m except that 5-chloro-4-bromopyridin-2-amine was used instead of 4-bromopyridin-2-amine and N-Boc-1,3-propanediamine was used instead of N-Boc-trans-1,4-cyclohexanediamine. 1H NMR (400 MHz, chloroform-d) δ 9.04 (s, 1H), 8.35 (s, 1H), 8.18 (s, 1H), 8.00 (s, 1H), 6.82 (s, 1H), 5.08 (s, 1H), 3.96 (s, 2H), 3.45 (q, J=6.2 Hz, 2H), 3.26-3.14 (m, 2H), 2.91 (s, 2H), 1.78-1.62 (m, 2H), 1.41 (s, 9H), 1.34 (s, 6H). MS 463.2 (M+1).
The synthesis method was the same as Example 15 except that 5-chloro-4-bromopyridin-2-amine was used instead of 4-bromopyridin-2-amine and N-Boc-1,3-propanediamine was used instead of N-Boc-trans-1,4-cyclohexanediamine. 1H NMR (400 MHz, methanol-d4) δ 8.23 (s, 1H), 7.99 (s, 1H), 7.27 (s, 1H), 3.97 (s, 2H), 3.42 (t, J=6.6 Hz, 3H), 3.06-2.86 (m, 4H), 1.90 (p, J=6.9 Hz, 2H), 1.34 (s, 6H). MS 363.1 (M+1).
The synthesis method was the same as Example 15 except that 5-chloro-4-bromopyridin-2-amine was used instead of 4-bromopyridin-2-amine and tert-butyl (1S,3S)-3-aminocyclopentylcarbamate was used instead of N-Boc-trans-1,4-cyclohexanediamine. 1H NMR (400 MHz, methanol-d4) δ 8.21 (s, 1H), 8.00 (s, 1H), 7.35 (s, 1H), 4.31 (p, J=6.3 Hz, 1H), 3.97 (s, 2H), 3.68 (p, J=6.7 Hz, 1H), 2.95 (s, 2H), 2.29-2.16 (m, 2H), 2.10-1.92 (m, 3H), 1.67-1.48 (m, 2H), 1.34 (s, 6H). MS 389.1 (M+1).
The synthesis method was the same as Example 16 except that 5-chloro-4-bromopyridin-2-amine was used instead of 4-bromopyridin-2-amine and tert-butyl (1S,3S)-3-aminocyclopentylcarbamate was used instead of N-Boc-trans-1,4-cyclohexanediamine. 1H NMR (400 MHz, chloroform-d) δ 9.02 (s, 1H), 8.71 (s, 1H), 8.16 (s, 1H), 7.95 (s, 1H), 7.07 (s, 1H), 6.08 (d, J=7.4 Hz, 1H), 4.48-4.31 (m, 2H), 3.95 (s, 2H), 2.89 (s, 2H), 2.30-2.17 (m, 2H), 2.10-1.99 (m, 1H), 1.97 (s, 3H), 1.93-1.84 (m, 1H), 1.66-1.52 (m, 1H), 1.51-1.40 (m, 1H), 1.32 (s, 6H). MS 431.1 (M+1).
The synthesis method was the same as Example 16 except that 5-chloro-4-bromopyridin-2-amine was used instead of 4-bromopyridin-2-amine and N-Boc-trans-1,3-cyclobutanediamine was used instead of N-Boc-trans-1,4-cyclohexanediamine. 1H NMR (400 MHz, DMSO-d6) δ 9.31 (s, 1H), 8.46 (s, 1H), 8.16 (s, 1H), 7.95 (s, 1H), 6.58-6.47 (m, 1H), 5.53-5.46 (m, 1H), 4.35-4.23 (m, 2H), 3.95 (s, 2H), 2.86 (s, 2H), 2.57-2.47 (m, 2H), 2.34-2.20 (m, 2H), 1.99 (s, 3H), 1.27 (s, 6H). MS 417.1 (M+1).
The synthesis method was the same as Example 15-m except that 5-chloro-4-bromopyridin-2-amine was used instead of 4-bromopyridin-2-amine and N-Boc-1,3-cyclohexanediamine was used instead of N-Boc-trans-1,4-cyclohexanediamine. 1H NMR (400 MHz, chloroform-d) δ 7.69 (br s, 1H), 7.53-7.35 (m, 2H), 7.23-7.12 (m, 1H), 6.98 (s, 2H), 2.93-2.84 (m, 1H), 2.45-2.21 (m, 2H), 1.85-1.72 (m, 3H), 1.50-1.30 (m, 4H), 1.26 (s, 9H), 1.14-1.09 (m, 1H), 0.95 (s, 6H). MS 503.2 (M+1).
The synthesis method was the same as Example 15 except that 5-chloro-4-bromopyridin-2-amine was used instead of 4-bromopyridin-2-amine and N-Boc-1,3-cyclohexanediamine was used instead of N-Boc-trans-1,4-cyclohexanediamine. 1H NMR (400 MHz, DMSO-d6) δ 9.31 (s, 1H), 8.46 (s, 1H), 8.16 (s, 1H), 7.91 (s, 1H), 6.54 (d, J=10.5 Hz, 1H), 3.96 (s, 2H), 3.48-3.34 (m, 1H), 2.89 (s, 2H), 2.63-2.49 (m, 1H), 2.30 (br s, 2H), 2.06-1.92 (m, 1H), 1.83-1.49 (m, 5H), 1.46-1.34 (m, 2H), 1.23 (s, 6H). MS 403.1 (M+1).
The synthesis method was the same as Example 17 except that 5-chloro-4-bromopyridin-2-amine was used instead of 4-bromopyridin-2-amine, N-Boc-1,3-cyclohexanediamine was used instead of N-Boc-trans-1,4-cyclohexanediamine, and bromoethane was used instead of 2-bromo-1-methoxyethane. 1H NMR (400 MHz, DMSO-d6) δ 9.23 (s, 1H), 8.48 (s, 1H), 8.16 (s, 1H), 7.93 (s, 1H), 6.54 (br s, 1H), 3.94 (s, 2H), 3.49-3.32 (m, 1H), 3.29-3.16 (m, 1H), 3.07-2.91 (m, 1H), 2.85 (s, 2H), 2.50-2.42 (m, 1H), 1.94-1.81 (m, 1H), 1.74-1.49 (m, 6H), 1.43-1.30 (m, 2H), 1.29 (t, J=5.7 Hz, 3H), 1.20 (s, 6H). MS 431.2 (M+1).
The synthesis method was the same as Example 16 except that 5-chloro-4-bromopyridin-2-amine was used instead of 4-bromopyridin-2-amine and N-Boc-1,3-cyclohexanediamine was used instead of N-Boc-trans-1,4-cyclohexanediamine. 1H NMR (400 MHz, chloroform-d) δ 8.98 (s, 1H), 8.36 (s, 1H), 8.13 (s, 1H), 7.99 (s, 1H), 7.08 (s, 1H), 5.90 (s, 1H), 3.95 (s, 2H), 3.91-3.70 (m, 2H), 2.89 (s, 2H), 2.33 (d, J=11.5 Hz, 1H), 2.06 (d, J=15.3 Hz, 1H), 1.87-1.76 (m, 4H), 1.58-1.40 (m, 2H), 1.33 (s, 6H). MS 445.2 (M+1).
The synthesis method was the same as Example 17 except that 5-chloro-4-bromopyridin-2-amine was used instead of 4-bromopyridin-2-amine and N-Boc-1,3-cyclohexanediamine was used instead of N-Boc-trans-1,4-cyclohexanediamine. 1H NMR (400 MHz, DMSO-d6) δ 9.24 (s, 1H), 8.44 (s, 1H), 8.16 (s, 1H), 7.94 (s, 1H), 6.54 (d, J=10.3 Hz, 1H), 3.94 (s, 2H), 3.75-3.66 (m, 2H), 3.51-3.36 (m, 2H), 3.27 (s, 3H), 2.88 (s, 2H), 2.84-2.76 (m, 2H), 2.49-2.42 (m, 1H), 1.94-1.46 (m, 6H), 1.42-1.31 (m, 2H), 1.22 (s, 6H). MS 461.2 (M+1).
The synthesis method was the same as Example 16 except that 5-chloro-4-bromopyridin-2-amine was used instead of 4-bromopyridin-2-amine and 4′,6′-dihydrospiro[cyclopropane-1,5′-pyrrolo[1,2-b]pyrazole]-3′-boronic acid pinacol ester was used instead of compound 15-i. 1H NMR (400 MHz, DMSO-d6) δ 9.23 (s, 1H), 8.46 (s, 1H), 8.17 (s, 1H), 7.92 (s, 1H), 6.94 (s, 1H), 5.64 (br s, 1H), 4.19-4.01 (m, 1H), 3.97 (s, 2H), 3.31-3.16 (m, 1H), 2.84 (s, 2H), 2.03 (s, 3H), 1.85-1.56 (m, 4H), 1.46-1.26 (m, 4H), 0.44-0.12 (m, 4H). MS 443.1 (M+1).
The synthesis method was the same as Example 16 except that 5-chloro-4-bromopyridin-2-amine was used instead of 4-bromopyridin-2-amine and 6,7-dihydro-4H-pyrazolo[5,1-c][1,4]oxazine-3-boronic acid pinacol ester was used instead of compound 15-i. 1H NMR (400 MHz, DMSO-d6) δ 9.20 (s, 1H), 8.45 (s, 1H), 8.14 (s, 1H), 8.12 (s, 1H), 6.84 (s, 1H), 5.69 (s, 1H), 4.63 (s, 2H), 4.19-4.00 (m, 1H), 3.93-3.78 (m, 4H), 3.34-3.11 (m, 1H), 1.98 (s, 3H), 1.82-1.61 (m, 4H), 1.36-1.16 (m, 4H). MS 433.2 (M+1).
The synthesis method was the same as Example 16 except that 5-chloro-4-bromopyridin-2-amine was used instead of 4-bromopyridin-2-amine and 5-methyl-4,5,6,7-tetrahydropyrazolo[1,5-a]pyrazine-3-boronic acid pinacol ester was used instead of compound 15-i. 1H NMR (400 MHz, DMSO-d6) δ 9.21 (s, 1H), 8.44 (s, 1H), 8.13 (s, 1H), 8.10 (s, 1H), 6.54 (d, J=11.7 Hz, 1H), 5.47 (d, J=11.2 Hz, 1H), 4.20-4.04 (m, 1H), 4.02-3.91 (m, 2H), 3.80 (s, 2H), 3.34-3.15 (m, 1H), 3.08-2.96 (m, 2H), 2.45 (s, 3H), 1.98 (s, 3H), 1.84-1.62 (m, 4H), 1.47-1.24 (m, 4H). MS 446.2 (M+1).
The synthesis method was the same as Example 16 except that 5-chloro-4-bromopyridin-2-amine was used instead of 4-bromo-pyridin-2-amine, and ethyl bromopropionate was used instead of compound 15-b. 1H NMR (400 MHz, DMSO-d6) δ 9.17 (s, 1H), 8.46 (s, 1H), 8.16 (s, 2H), 6.57 (s, 1H), 5.49 (s, 1H), 4.21-4.02 (m, 1H), 3.71 (t, J=7.0 Hz, 2H), 3.36-3.16 (m, 1H), 2.95-2.81 (t, J=7.1 Hz, 2H), 2.68-2.50 (m, 2H), 1.99 (s, 3H), 1.80-1.63 (m, 4H), 1.57-1.40 (m, 4H). MS 417.1 (M+1).
The synthesis method was the same as Example 16 except that 5-chloro-4-bromopyridin-2-amine was used instead of 4-bromo-pyridin-2-amine, and 1-isopropyl-2-methyl-1H-imidazol-5-boronic acid pinacol ester was used instead of compound 15-i. 1H NMR (400 MHz, DMSO-d6) δ 9.16 (s, 1H), 8.46 (s, 1H), 8.15 (s, 1H), 6.94 (br s, 1H), 6.75 (s, 1H), 5.52 (s, 1H), 4.85 (hept, J=4.2 Hz, 1H), 4.20-3.98 (m, 1H), 3.34-3.13 (m, 1H), 2.52 (s, 3H), 1.99 (s, 3H), 1.80-1.66 (m, 4H), 1.57 (d, J=4.4 Hz, 6H), 1.53-1.37 (m, 4H). MS 433.2 (M+1).
The synthesis method was the same as Example 16 except that 5-chloro-4-bromopyridin-2-amine was used instead of 4-bromo-pyridin-2-amine, and 6,6-dimethyl-6,7-dihydro-5H-pyrrolo[1,2-a]imidazol-3-boronic acid pinacol ester was used instead of compound 15-i. 1H NMR (400 MHz, DMSO-d6) δ 9.21 (s, 1H), 8.46 (s, 1H), 8.16 (s, 1H), 6.65 (s, 1H), 6.56 (br s, 1H), 5.49 (br s, 1H), 4.20-4.04 (m, 1H), 3.96 (s, 2H), 3.37-3.12 (m, 1H), 2.87 (s, 2H), 1.99 (s, 3H), 1.80-1.67 (m, 4H), 1.55-1.42 (m, 4H), 1.30 (s, 6H). MS 445.1 (M+1).
Step 1: triphosgene (973 mg, 3.28 mmol) and anhydrous DCM (50 mL) were added to a round-bottom three-neck flask, and the DCM solution (30 mL) of compound 87-a (2.0 g, 9.64 mmol) was added dropwise in an ice bath, then anhydrous Et3N (5.36 mL, 28.90 mmol) was added dropwise, and the reaction was stopped after continuing to stir for 2 hours. The solvent was evaporated to dryness under reduced pressure to obtain a brown solid, which was directly used in the next reaction without further purification. The above obtained intermediate, 87-b (2.07 g, 9.64 mmol), Et3N (4.02 mL, 28.92 mmol) and anhydrous toluene (80 mL) were added to the round-bottom flask, and heated to reflux to react overnight. After the reaction was completed, it was cooled to room temperature, the reaction solution was poured into water, and extracted with ethyl acetate. The aqueous phase was repeatedly extracted with ethyl acetate for 2-3 times. The organic phases were combined and washed 3 times with saturated NaCl aqueous solution. After drying with anhydrous Na2SO4, the solvent was evaporated to dryness under reduced pressure, and the resultant was purified by column chromatography to obtain light yellow solid 87-c (2.7 g, yield 62.55%). 1H NMR (400 MHz, DMSO-d6) δ 9.22 (s, 1H), 8.34 (s, 1H), 8.09 (s, 1H), 7.08 (d, J=7.6 Hz, 1H), 6.74 (d, J=8.0 Hz, 1H), 3.37 (d, J=3.8 Hz, 1H), 3.23-3.09 (m, 1H), 1.93-1.70 (m, 4H), 1.37 (s, 9H), 1.28-1.13 (m, 4H). MS 447.1 (M+1).
Step 2: intermediate 87-c (400 mg, 0.893 mmol), 4-cyclopropyl-1H-imidazole (126 mg, 1.16 mmol), Cs2CO3 (437 mg, 1.34 mmol), CuO (7 mg, 0.089 mmol), 4,7-dimethoxy-1,10-phenanthroline (43 mg, 0.179 mmol), PEG-3350 (200 mg) and butyl cyanide (10 mL) were added into the round bottom flask, the reaction was conducted at 120° C. for 16 hours. After the reaction was completed, it was cooled to room temperature, the reaction solution was poured into water, and extracted with ethyl acetate. The aqueous phase was repeatedly extracted with ethyl acetate for 2-3 times. The organic phases were combined and washed 3 times with saturated NaCl aqueous solution. After drying with anhydrous Na2SO4, the solvent was evaporated to dryness under reduced pressure, and the resultant was purified by column chromatography to obtain yellow solid 87-e (110 mg, yield 25.92%). 1H NMR (400 MHz, DMSO-d6) δ 9.20 (s, 1H), 8.26 (s, 1H), 8.11 (s, 1H), 7.80 (s, 1H), 7.16 (d, J=1.9 Hz, 1H), 6.59 (br s, 1H), 5.45-5.32 (m, 1H), 4.23-4.04 (m, 1H), 3.30-3.11 (m, 1H), 2.35-2.20 (m, 1H), 1.89-1.78 (m, 2H), 1.69-1.49 (m, 2H), 1.46 (s, 9H), 1.34-1.11 (m, 6H), 1.09-0.95 (m, 2H). MS 475.2 (M+1).
Steps 3-4: intermediate 87-e (100 mg, 0.21 mmol) and DCM (5 mL) were added to the round-bottomed flask, 4.0 M dioxane solution of hydrochloride (0.5 mL) was added dropwise, and reacted at room temperature overnight. After the reaction was completed, the solvent was evaporated to dryness under reduced pressure to obtain a yellow solid. DCM (5 mL) and Et3N (146 mL, 1.05 mmol) were added to the round bottomed flask to redissolve the above intermediate, acetic anhydride (18 μL, 0.32 mmol) was added dropwise in an ice bath, and reacted at room temperature for 2 hours. After the reaction was completed, the solvent was evaporated to dryness under reduced pressure, and the resultant was seperated and purified by column chromatography to obtain a compound 87 (45 mg, two-step yield 51.27%). 1H NMR (400 MHz, DMSO-d6) δ 9.23 (s, 1H), 8.27 (s, 1H), 8.10 (s, 1H), 7.80 (s, 1H), 7.16 (d, J=2.1 Hz, 1H), 6.54 (s, 1H), 5.49 (s, 1H), 4.21-4.02 (m, 1H), 3.32-3.14 (m, 1H), 2.19-2.10 (m, 1H), 1.99 (s, 3H), 1.78-1.68 (m, 2H), 1.54-1.41 (m, 2H), 1.34-1.11 (m, 6H), 1.09-0.95 (m, 2H). MS 417.2 (M+1).
Compound 88-a (60 mg, 0.12 mmol) and anhydrous THE (5 mL) were added to the round bottomed flask, LiAlH4 (14 mg, 0.26 mmol) was added thereto under ice bath, the resultant was stirred at room temperature for 10 minutes, and then warmed to 75° C. to react for 4 hours. After the reaction was completed, it was cooled to room temperature, potassium sodium tartrate aqueous solution was added dropwise in an ice bath, the resultant was stirred vigorously at room temperature for 10 minutes, and a large amount of white solid was produced, filtered under reduced pressure, and the filter cake was washed with ethyl acetate. The filtrate was collected and the solvent was evaporated to dryness under reduced pressure, and the resultant was separated and purified by column chromatography to obtain light yellow solid 88 (20 mg, yield 40.22%). 1H NMR (400 MHz, chloroform-d) δ 8.56 (br s, 1H), 8.14 (s, 1H), 7.99 (s, 1H), 7.07 (br s, 1H), 5.46-5.38 (m, 1H), 3.94 (s, 2H), 3.82-3.67 (m, 1H), 2.93 (s, 2H), 2.87-2.77 (m, 2H), 2.64 (s, 3H), 2.24-2.19 (m, 2H), 1.76-1.68 (m, 2H), 1.48-1.38 (m, 4H), 1.32 (s, 6H). MS 417.2 (M+1).
The synthesis method was the same as Example 15 except that 5-chloro-4-bromopyridin-2-amine was used instead of 4-bromopyridin-2-amine and N,N-dimethyl-trans-1,4-cyclohexanediamine was used instead of N-Boc-trans-1,4-cyclohexanediamine. 1H NMR (400 MHz, chloroform-d) δ 8.79 (s, 1H), 8.47 (s, 1H), 8.16 (s, 1H), 7.93 (s, 1H), 7.02 (br s, 1H), 3.95 (s, 2H), 3.72-3.64 (m, 1H), 3.25-3.19 (m, 1H), 2.91 (s, 2H), 2.52 (s, 6H), 2.24-2.01 (m, 4H), 1.60-1.45 (m, 4H), 1.32 (s, 6H). MS 431.2 (M+1).
Compound 46 (100 mg, 0.217 mmol), DIPEA (90 μL, 0.542 mmol) and anhydrous DMF (5 mL) were added to the double-neck round bottomed flask, and methyl iodide (14 μL, 0.217 mmol) was added dropwise under ice bath, the resultant was continually stirred for 2 hours. The methyl iodide (14 μL, 0.217 mmol) was continually added dropwise, and the resultant was warmed to room temperature to react for 2 hours. NaOH aqueous solution (0.2 mL) was added to quench the reaction, the solvent was evaporated to dryness under reduced pressure and then the resultant was separated and purified by column chromatography to obtain light yellow solid 90 (18 mg, yield 17.47%) and yellow solid 91 (8 mg, yield 7.53%). Compound 90: 1H NMR (400 MHz, chloroform-d) δ 8.75 (br s, 1H), 8.48 (s, 1H), 8.14 (s, 1H), 7.93 (s, 1H), 6.98 (s, 1H), 3.94 (s, 2H), 3.80-3.75 (m, 2H), 3.72-3.64 (m, 1H), 3.38 (s, 3H), 3.22-3.15 (m, 1H), 3.10 (t, J=5.4 Hz, 2H), 2.90 (s, 2H), 2.65 (s, 3H), 2.26-2.12 (m, 4H), 1.59-1.51 (m, 4H), 1.32 (s, 6H). MS 475.2 (M+1). Compound 91: 1H NMR (400 MHz, chloroform-d) δ 8.97 (br s, 1H), 8.14 (s, 1H), 7.96 (s, 1H), 7.23 (br s, 1H), 4.13-4.01 (m, 1H), 3.92 (s, 2H), 3.90-3.85 (m, 2H), 3.84-3.77 (m, 2H), 3.39 (s, 3H), 3.30 (s, 6H), 2.91 (s, 2H), 2.42-2.21 (m, 4H), 1.86-1.77 (m, 2H), 1.66-1.54 (m, 2H), 1.30 (s, 6H). MS 490.3 (M+1).
The synthesis method was the same as Example 15 except that 5-chloro-4-bromopyridin-2-amine was used instead of 4-bromopyridin-2-amine, and (1r, 4r)-4-morpholinylcyclohexyl-1-amine was used instead of N-Boc-trans-1,4-cyclohexanediamine. 1H NMR (400 MHz, DMSO-d6) δ 9.20 (s, 1H), 8.46 (s, 1H), 8.16 (s, 2H), 6.59 (br s, 1H), 3.95 (s, 2H), 3.60-3.52 (m, 4H), 3.32-3.15 (m, 1H), 2.88 (s, 2H), 2.64-2.51 (m, 1H), 2.49-2.41 (m, 4H), 2.30-2.11 (m, 2H), 1.97-1.83 (m, 4H), 1.59-1.45 (m, 2H), 1.30 (s, 6H). MS 473.2 (M+1).
Experimental method: Recombinant human CDK9/cyclin T1 (Carna bioscience, Cat #04-110) was diluted with dilution buffer (20 mM Tris HCl (pH 7.5), 0.02% Triton X-100, 0.01% BSA, 2 mM DTT, 0.5 mM Na3VO4, 10% Glycerol) to 2.5 ng/l, the substrates CDK7/9 tide (ThermoFisher, Cat #PV5090) and ATP (sigmaaldrich, Cat #A1852) were diluted with assay buffer (25 mM Tris HCl (pH7.5), 10 mM MgCl2, 0.5 mM EGTA (pH 8), 0.5 mM Na3VO4, 5 mMb-glycerol phosphate, 0.1% Triton X-100, 2.5 mM DTT) to final concentrations of 100 μM and 10 M respectively, aliquot and set aside. 2 μl of diluted recombinant human CDK9/cyclin T1, 1 μl of test compound, and 2 μl of diluted substrate CDK7/9 tide containing ATP were added to the 384-well plate. Incubation was conducted at 37° C. for 120 min and then 5 l of ADP-Glo (Promega ADP-Glo Kinase Assay kit, Cat #V9102) was added, incubated at room temperature for 45 minutes, then 10 μl of kinase detection reagent (Promega ADP-Glo Kinase Assay kit, Cat #V9102) was added, and incubated at room temperature for 30 minutes, and then the luminescence was measured with a BioTek microplate reader. The positive control was the well in which enzyme and substrate were co-incubated, and the negative control was the well in which dilution buffer and substrate were co-incubated. The inhibition rate was calculated according to the following formula.
CDK1,4,6,7 enzyme (CDK1/cyclin B, CDK4/cyclin D1, CDK6/cyclin D1, CDK7/cyclin H) activity was measured using a 5 μL enzyme system (50 mM HEPES, 10 mM MgCl2, 1 mM EGTA, 2 mM DTT and 0.0100 Tween 20, appropriate enzyme) either. A mixture of 2.5 μL of compound, 2.5 L of substrate and ATP (final concentration of substrate 50 nM, final concentration of ATP 200 μM) was incubated at room temperature in the dark for 60 minutes. Then 5 μL EDTA stop solution diluted in 1× detection buffer (final concentration 6 mM) was added to each well, then an antibody diluted in 1× detection buffer (final concentration 2 nM) was added to incubate for 1 hour at room temperature in the dark, and then the corresponding enzyme activity inhibition rate or IC50 was calculated after measurement.
Experimental results: The inhibitory activities of the compounds prepared in the preparation examples of the present invention, as well as the positive control compound AZD4573 and the positive control compound Dinaciclib on CDK9 enzyme activity are shown in Table 1.
Experimental conclusion: It can be seen from Table 1 that in the biological activity evaluation, the 2-heteroaromatic ring substituted urea compounds of the present invention all have high inhibitory activity against CDK9, and the inhibition rates of CDK9 enzyme activity at a lower concentration of 100 nM are all more than 500, in which 39 compounds have high inhibitory activity against CDK9 (enzyme activity inhibition rate>50% @ 10 nM), which reflects that this type of compounds has good CDK9 inhibitory activity advantages.
The inhibitory activities of compound 2, compound 3, compound 46, compound 47 and compound 67 against CDK9, CDK1, CDK4, CDK6 and CDK7 enzyme activities are shown in Table 2. The results show that 2-heteroaromatic ring substituted urea compounds have the advantage of high CDK9 subtype selectivity.
Experimental method: WSU-DLCL2 cells in good condition were seeded in a 96-well plate at 20,000/well. The test compound was gradient diluted with PBS and then added to the wells. After incubating with the cells for 72 hours, 10 μl of CCK-8 reagent was added to each well. After further incubation, the absorbance was measured at 460 nm and the 4-parameter curve fitting of Softmax Pro software was used to calculate the proliferation inhibition IC50 of the test compound.
The results in Table 3 show that the representative compound 47 of the present invention has potent inhibitory activity on the growth of various tumor cells in vitro. The IC50 value can reach low nanomolar or even picomolar levels, and is superior to AZD4573, a positive control compound currently in clinical phase II. In particular, the IC50 value of the growth inhibition of Pfeiffer and 422 cells reached the picomolar level, which was 46.67 and 20.33 times higher than that of the positive control compound respectively, fully demonstrating that the 2-heteroaromatic ring substituted urea compound of the present invention has significant advantage in vitro anti-tumor activity.
Western Blot was used to detect the effect of compounds on the activation of CDK9 signaling pathway in WSU-DLCL2 cells.
Experimental method: An appropriate amount of WSU-DLCL2 cells were seeded in a 6-well plate. After 24 hours of exposure to the test compound, the cells were collected by centrifugation. A corresponding amount of 1× loading buffer (50 mM Tris-HCl (pH6.8), 2% SDS, 0.1% bromophenol blue, 10% glycerol) was added, the sample was boiled at 100° C. after lysis. The same volume of sample was taken. After SDS-PAGE electrophoresis, the protein on the gel was transferred to a nitrocellulose membrane. The corresponding band was cut according to the size of the protein and blocked TBST containing 5% skimmed milk powder (20 mM Tris-HCl, 150 mM NaCl, 0.1% Tween20, adjust pH to 7.4) for 1 hour, and primary antibody was incubated overnight at 4° C. TBST was used to elute excess primary antibody for 10 minutes each time for three times, the secondary antibody was incubated at room temperature for 1 hour, and then TBST was used to elute excess secondary antibody for 10 minutes each time for three times. Finally, the strips were colored and photographed using a Bio-Rad colorimeter.
The experimental results are shown in
After compound 46, compound 47 and positive compound AZD4573 were administered to mice intravenously (iv) and orally (po) respectively, blood samples were collected at different time points, and LC-MS/MS was used to determine the concentration of the compound in the mouse plasma after administration of the test substance. The relevant pharmacokinetic parameters were calculated to examine the oral bioavailability and pharmacokinetic properties of the compound in mice. The results are shown in Table 4.
As can be seen from Table 4, the plasma exposure and oral bioavailability of compounds 46 and 47 are better than those of the positive compound AZD4573, and their plasma clearance rates are lower, indicating better druggability.
Furthermore, the identification results of metabolites of compound 47 and the positive compound AZD4573 in mouse plasma (as shown in the following chemical reaction formula and Tables 5-6) show that compound 47 has higher plasma stability, lower body clearance rate and better drugability than the positive compound.
Metabolic pathways of compound 47 in mouse plasma
Note:
In summary, it can be seen that the compounds containing 2-heteroaromatic ring substituted ureas in the examples of the present invention have excellent inhibitory activity against CDK9, and at the same time have the advantages of high selectivity for CDKs subtypes, as well as better druggability, and are expected to solve the current clinical problems of off-target toxicity and druggability of CDK inhibitors caused by poor selectivity. The representative compound of the present invention (Example 47) has a very high inhibitory effect on the in vitro proliferation of a variety of CDK9-positive malignant tumor cells. The IC50 value can reach low nanomolar or even picomolar levels, which is significantly better than AZD4573, a compound currently in clinical researching. It shows that 2-heteroaromatic ring substituted urea compounds have excellent anti-tumor activity advantages. In addition, preliminary pharmacokinetic data indicate that the representative compound of the present invention (Example 47) has better druggability than the positive compound AZD4573, such as higher plasma stability, higher plasma exposure and lower clearance rate.
The preferred embodiments of the present invention are described in detail above with reference to the accompanying drawings. However, the present invention is not limited to the specific details of the above embodiments. Within the scope of the technical concept of the present invention, various simple modifications can be made to the technical solution of the present invention. Such simple modifications all belong to the protection scope of the present invention.
Number | Date | Country | Kind |
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202110936628.2 | Aug 2021 | CN | national |
Filing Document | Filing Date | Country | Kind |
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PCT/CN2022/107742 | 7/26/2022 | WO |