USE OF INTEGRIN INHIBITORS FOR TREATMENT OR PREVENTION OF A NEUROLOGICAL IMMUNITY DISORDER AND/OR NERVOUS SYSTEM INJURY

Information

  • Patent Application
  • 20220119532
  • Publication Number
    20220119532
  • Date Filed
    January 14, 2020
    4 years ago
  • Date Published
    April 21, 2022
    2 years ago
Abstract
Methods of treating, preventing, inhibiting, delaying the onset of, or ameliorating a neurological immunity disorder can include administering an effective amount of a compound comprising an antibody or antigen binding fragment of an antibody to a subject in need of treatment, prevention, inhibition, delay of onset, or amelioration of a neurological immunity disorder and/or nervous system injury. The antibody or the antigen binding fragment of an antibody binds specifically to CD49a.
Description
REFERENCE TO SEQUENCE LISTING

The present application is being filed along with a Sequence Listing in electronic format. The Sequence Listing is provided as a file entitled 131819-01320SL.TXT, created and last saved Jan. 12, 2020, which is 10,046 bytes in size. The information in the electronic format of the Sequence Listing is incorporated herein by reference in its entirety.


BACKGROUND

The central nervous system (CNS) and the immune system have very complex interactions that both control and modulate the function of each other1-6. Recent work emphasized the role of T cells in the regulation of cognition in mice7-9. Indeed, mice lacking a functional immune system, notably CD4 T cells, exhibit impaired performance of cognitive tasks. This impairment is rescued by injection of CD4 T cells back into immune deficient mice7. Under normal conditions, T cells are virtually absent from the brain parenchyma but are enriched in the surrounding of the brain called the meninges5,8, notably around the major blood vessels in the dura mater, the sinuses10. It was previously unclear how T cells, localized in the meninges, are able to affect brain function.


Multiple sclerosis (MS) is characterized by the destruction of the CNS myelin and is considered to be an autoimmune disease. MS results in physical, mental, and/or psychiatric problems. Symptoms may include double vision, muscle weakness, trouble with sensation, or trouble with coordination. There is currently no cure for MS.


Alzheimer's disease (AD) is a type of dementia that is associated with memory loss, and problems with thinking and behavior. The parenchymal accumulation of neurotoxic amyloid beta (Aβ) is a central hallmark of AD. There is currently no cure for AD and treatments are limited to reducing and/or slowing the progression of the symptoms.


Autism spectrum disorder (ASD) is a neurodevelopmental disorder characterized by impaired social interaction, verbal and non-verbal communication, and restricted and repetitive behavior. There is currently no cure for ASD. There is a need in the field for methods of treatment for neurological immunity disorders, including but not limited to MS, AD and ASD. The present disclosure addresses this need.


FIELD

Embodiments herein relate to methods for treating, preventing, inhibiting or ameliorating a neurological immunity disorder, or a symptom thereof.


SUMMARY

The present invention provides compositions and methods for modulating migration and gene expression of immune cells in the central nervous system. The compositions and methods are useful for treating, preventing, or ameliorating symptoms of neurological immunity disorder.


Accordingly, in one aspect, the present invention provides a method of reducing neuron death. The method includes contacting a neural tissue with an effective amount of a compound that inhibits integrin signaling. In one embodiment, the compound reduces neuron death by at least about 10%. In another embodiment, the neural tissue is a human tissue. In still another embodiments, the compound decreases CD49a function.


In one embodiment, the compound is an antibody or antigen binding fragment thereof that specifically binds to CD49a. In another embodiment, the antibody is a monoclonal antibody. In still another embodiment, the antibody is a human antibody or humanized antibody.


In one embodiment, the neural tissue is in a subject. The method further includes administering the compound to the subject. In one embodiment, the administration of the compound is selected from the group consisting of intracerebroventricular administration, intra cisterna magna administration, dermal application to the scalp skin of the subject, subcutaneous administration, intravenous administration, intramuscular administration, intra-articular administration, intra-synovial administration, intrasternal administration, intrathecal administration, intrahepatic administration, intralesional administration, intracranial administration, intraocular administration, intraperitoneal administration, trans dermal administration, buccal administration, sublingual administration, topical administration, local injection, and surgical implantation. In another embodiment, the administration is an injection.


In another embodiment, the method reduces neuron death in a subject that has a central nervous system (CNS) injury. In still another embodiment, the CNS injury is a brain injury or a spinal cord injury.


In one embodiment, the method is used in a treatment of multiple sclerosis (MS) disease or autism spectrum disorder (ASD).


In another aspect, the present invention provides a method of selectively increasing the number of myeloid cells in a neural tissue. The method includes contacting the neural tissue with effective amount of a compound that inhibits integrin signaling.


In one embodiment, the neural tissue is a human tissue. In another embodiment, the myeloid cells are selected from the group consisting of neutrophils, monocytes, and macrophages.


In still another embodiment, the compound increases the number of myeloid cells by at least about 10%.


In yet another embodiment, the compound decreases CD49a function. In one embodiment, the compound is an antibody or antigen biding fragment thereof that specifically binds to CD49a. In still another embodiment, the antibody is a monoclonal antibody. In yet another embodiment, the antibody is a human antibody or humanized antibody.


In one embodiment, the neural tissue is in a subject, and the method further includes administering the compound to the subject. In another embodiment, the administration of the compound is selected from the group consisting of intracerebroventricular administration, intra cisterna magna administration, dermal application to the scalp skin of the subject, subcutaneous administration, intravenous administration, intramuscular administration, intra-articular administration, intra-synovial administration, intrasternal administration, intrathecal administration, intrahepatic administration, intralesional administration, intracranial administration, intraocular administration, intraperitoneal administration, trans dermal administration, buccal administration, sublingual administration, topical administration, local injection, and surgical implantation. In still another embodiment, the administration is an injection.


In one embodiment, the method has neuroprotective effect in a subject that has a central nervous system (CNS) injury. In another embodiment, the CNS injury is a brain injury or a spinal cord injury. In still another embodiment, the method is used in a treatment of multiple sclerosis (MS) disease or autism spectrum disorder (ASD).


In one aspect, the present invention provides a method of selectively modulating gene expression profile in an immune cell within a neural tissue. The method includes contacting the neural tissue with an effective amount of a compound that inhibits integrin signaling.


In one embodiment, the neural tissue is a human tissue.


In another embodiment, the immune cell is selected from the group consisting of macrophages, monocytes, and neutrophils. In still another embodiment, the immune cell is selected from the group consisting of meningeal macrophages, monocytes, and neutrophils.


In one embodiment, the method increases the expression of a gene that enhances the migration of myeloid cells or neuroprotection. In still another embodiment, the method increases the expression of a gene selected from the group consisting of Cxcl2, Ccl3, Ccl4, Cxcl16, Ccr2, Spp1, Arg1, Trem2, and Tgfbi. In yet another embodiment, the method increases the expression of the gene by at least about 10%.


In another embodiment, the method decreases the expression of a gene selected from the group consisting of Ccl24, Ccl7, Ccl12, and Ccl8. In still another embodiment, the method decreases the expression of the gene by at least about 10%. In one embodiment, the method increases the expression of a gene selected from the group of genes listed in Tables 2, 3, 6, 7, 10, and 11. In another embodiment, the method decrease the expression of a gene selected from the group of genes listed in Tables 4, 5, 8, 9, 12, and 13.


In one embodiment, the compound decreases CD49a function. In another embodiment, the compound is an antibody or antigen binding fragment thereof that specifically binds to CD49a. In still another embodiment, the antibody is a monoclonal antibody. In yet another embodiment, the antibody is a human antibody or humanized antibody.


In one embodiment, the neural tissue is in a subject, and the method further includes administering the compound to the subject. In another embodiment, the administration of the compound is selected from the group consisting of intracerebroventricular administration, intra cisterna magna administration, dermal application to the scalp skin of the subject, subcutaneous administration, intravenous administration, intramuscular administration, intra-articular administration, intra-synovial administration, intrasternal administration, intrathecal administration, intrahepatic administration, intralesional administration, intracranial administration, intraocular administration, intraperitoneal administration, trans dermal administration, buccal administration, sublingual administration, topical administration, local injection, and surgical implantation. In still another embodiment, the administration is an injection.


In another embodiment, the method reduces neuron death in a subject that has a central nervous system (CNS) injury. In still another embodiment, the CNS injury is a brain injury or a spinal cord injury. In yet another embodiment, the method is used in a treatment of multiple sclerosis (MS) disease or autism spectrum disorder (ASD).


In one aspect, the method further includes identifying a subject in need of using the method for a treatment. In one embodiment, the subject is susceptible or suffering from a neurological immunity disorder selected from the group consisting of autism spectrum disorder (ASD), multiple sclerosis (MS), and central nervous system injury.


In some embodiments, the present application provides methods of treating, preventing, inhibiting, delaying the onset of, or ameliorating a neurological immunity disorder (such as Alzheimer's Disease (AD)) or a symptom thereof or nervous system injury or a symptom thereof in an animal subject. The method can comprise administering to the subject a therapeutically effective amount of a compound that inhibits (or blocks) integrin signaling. In some embodiments, methods of treating, preventing, inhibiting, delaying the onset of, or ameliorating a neurological immunity disorder (such as AD), or a symptom thereof, nervous system injury (such as Central Nervous System (CNS) injury), in an animal subject are described. In some embodiments, the method comprises administering to the subject a therapeutically effective amount of a compound that decreases or inhibits CD49a function, for example by binding specifically to CD49a. In some embodiments, the method comprises administering to the subject a therapeutically effective amount of an antibody or antigen binding fragment which binds CD49a. In some embodiments, the compound that inhibits integrin signaling is administered after the onset of the neurological immunity disorder, for example at least about 8 days after the onset of the neurological immunity disorder, for example at least 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, or 28 days, including any range between any two of the listed values, for example, including but not limited to the following ranges which are provided for exemplary purposes only: 5-28 days, 5-21 days, 5-14 days, 5-7 days, 7-28 days, 7-21 days, 7-14 days, 10-28 days, 10-21 days, or 10-14 days. In some embodiments, the administration of the compound after the onset of the neurological immunity disorder reduces clinical symptoms of the neurological immunity disorder, which can be measured, for example, by a clinical score. In some embodiments, the compound that inhibits integrin signaling comprises, consists essentially of, or consists of a CD49a inhibiting (or blocking) antibody. In some embodiments, the method comprises treating, preventing, inhibiting, delaying the onset of, or ameliorating a neurological immunity disorder (such as AD) or a symptom thereof, or nervous system injury (such as CNS injury) or a symptom thereof. In some embodiments, the method comprises treating, preventing, inhibiting, delaying the onset of, or ameliorating AD or a symptom thereof, or nervous system injury (such as CNS injury) or a symptom thereof. In some embodiments, the method comprises treating, preventing, inhibiting, delaying the onset of, or ameliorating AD or a symptom thereof. In some embodiments, the method comprises treating, preventing, inhibiting, delaying the onset of, or ameliorating nervous system injury (such as CNS injury) or a symptom thereof. Example nervous system injury can comprise, consist essentially of or consist of a traumatic injury (such as nerve crush) and/or injury by a chemical agent such as a drug or toxin. In some embodiments, the nervous system injury comprises, consists essentially of or consists of a traumatic injury (such as nerve crush).


In some embodiments, the subject is a human. The compound can decrease CD49a function. In some embodiments, the compound comprises, consists of, or consists essentially of an antibody that binds specifically to CD49a, or an antigen binding fragment thereof. In some embodiments, the antibody or antigen binding fragment is a monoclonal antibody. In some embodiments, the antibody or antigen binding fragment is a human antibody. In some embodiments, the antibody or antigen binding fragment is a humanized antibody. In some embodiments, the antibody or antigen binding fragment is a chimeric antibody. In some embodiments, the compound that inhibits integrin signaling is an antibody or an antigen binding fragment which specifically binds CD49a. By “binds specifically to CD49a” it is understood that the antibody or antigen binding fragment binds preferentially to CD49a compared to other antigens, but there is no requirement that the antibody or antigen binding fragment bind with absolute specificity only to CD49a. In some embodiments, the antibody or antigen binding fragment binds specifically to CD49a compared to other integrins. In some embodiments, the antibody binds specifically to CD49a, and does not exhibit appreciable binding to any of CD49b, CD49c, CD49d, CD49e, and/or CD49f . Without being limited by theory, it is noted that CD49a-f represent the alpha 1 through 6 chains of beta 1 integrins, and as such, CD49a-f have different structures and CD49b-f are not expected to appreciably cross react with any antibody that binds specifically to CD49a. In some embodiments, the antibody does not bind specifically to any of CD49b, CD49c, CD49d, CD49e, and/or CD49f, including combinations of two or more of the listed molecules.


In some embodiments the method further comprises the step of identifying a subject in need of treatment. In certain embodiments the subject in need of treatment is susceptible to or suffering from a neurological immunity disorder selected from the group consisting of autism spectrum disorder (ASD), multiple sclerosis (MS), Alzheimer's disease (AD), and central nervous system (CNS) injury. In some embodiments, the subject in need of treatment suffers from, or is at risk of a neurological immunity disorder (such as AD) or a symptom thereof, or nervous system injury (such as CNS injury) or a symptom thereof. In some embodiments subject in need of treatment suffers from, or is at risk of AD or a symptom thereof, or nervous system injury (such as CNS injury) or a symptom thereof. In some embodiments, the subject in need of treatment suffers from, or is at risk of AD or a symptom thereof. In some embodiments, the subject in need of treatment suffers from, or is at risk of nervous system injury (such as CNS injury) or a symptom thereof. In some embodiments subject in need of treatment suffers from, or is at risk of AD or a symptom thereof, or CNS injury or a symptom thereof.


In some embodiments, administration of the compound (e.g., an antibody or antigen binding fragment specific for CD49a) is via intracerebroventricular injection. In other embodiments, an ointment comprises the compound and administration is via application of the ointment to the skin (scalp) of said subject. In some embodiments, the ointment comprises the compound and administration is via application of the ointment to the head of the subject, such as on the scalp. In some embodiments, the administration of the compound (e.g., an antibody or antigen binding fragment specific for CD49a) results in accumulation of immune cells in the brain meninges. In particular embodiments, the administration of the compound results in elevated T cells and natural killer T (NKT) cells in the brain parenchyma.


In some embodiments, the present application provides a method of treating MS, AD, and/or nervous system injury in a human subject, comprising administering to the subject a therapeutically effective amount of a CD49a inhibiting (or blocking) antibody or antigen binding fragment thereof. In particular embodiments, the method further comprises the step of identifying a subject in need of said treatment. In other embodiments, the administration of the CD49a inhibiting (or blocking) antibody is via intracerebroventricular injection. In still further embodiments, an ointment comprises said CD49a inhibiting (or blocking) antibody and the administration is via application of the ointment to the skin (scalp) of the subject. In some embodiments, an ointment comprises said CD49a inhibiting (or blocking) antibody and the administration is via application of the ointment to the head of the subject, such as on the scalp. In some embodiments, the method is for treating MS and/or AD. In some embodiments, the method is for treating MS and/or nervous system injury (such as CNS injury). In some embodiments, the method is for treating AD and/or nervous system injury. In some embodiments, the method is for treating MS. In some embodiments, the method is for treating AD. In some embodiments, the method is for treating nervous system injury (such as CNS injury). Example nervous system injuries can comprise, consist essentially of, or consist of a traumatic injury (such as nerve crush) and/or injury by a chemical agent such as a drug or toxin. In some embodiments, the nervous system injury comprises, consists essentially of or consists of a traumatic injury (such as nerve crush). In some embodiments, the nervous system injury comprises, consists essentially of or consists of a CNS injury.


In some embodiments, the CD49a inhibiting (or blocking) antibody or antigen binding fragment thereof is administered after the onset of the neurological immunity disorder and/or nervous system injury. In some embodiments, the administration of the CD49a inhibiting (or blocking) antibody or antigen binding fragment thereof after the onset of the neurological immunity disorder reduces clinical symptoms of the neurological immunity disorder, which can be measured, for example, by a clinical score. In some embodiments, the CD49a inhibiting (or blocking) antibody or antigen binding fragment thereof is administered after the onset of the neurological immunity disorder (such as AD) or nervous system injury (such as CNS injury). In some embodiments, the administration of the CD49a inhibiting (or blocking) antibody or antigen binding fragment thereof after the onset of the neurological immunity disorder (such as


AD) or nervous system injury reduces clinical symptoms of the nervous system injury, which can be measured, for example, by a clinical score. In some embodiments, the CD49a inhibiting (or blocking) antibody or antigen binding fragment thereof is administered after the onset of the nervous system injury or AD. In some embodiments, the administration of the CD49a inhibiting (or blocking) antibody or antigen binding fragment thereof is after the onset of the nervous system injury reduces clinical symptoms of the nervous system injury or AD, which can be measured, for example, by a clinical score. In some embodiments, the CD49a inhibiting (or blocking) antibody or antigen binding fragment thereof is administered after the onset of the nervous system injury. In some embodiments, the administration of the CD49a inhibiting (or blocking) antibody or antigen binding fragment thereof after the onset of the nervous system injury reduces clinical symptoms of the nervous system injury, which can be measured, for example, by a clinical score. In some embodiments, the CD49a inhibiting (or blocking) antibody or antigen binding fragment thereof is administered after the onset of the AD. In some embodiments, the administration of the CD49a inhibiting (or blocking) antibody or antigen binding fragment thereof after the onset of the nervous system injury reduces clinical symptoms of the AD, which can be measured, for example, by a clinical score. In some embodiments, the nervous system injury comprises, consists essentially of or consists of a CNS injury. In some embodiments, the nervous system injury comprises, consists essentially of or consists of a traumatic injury (such as nerve crush).





BRIEF DESCRIPTION OF THE DRAWINGS


FIGS. 1A-1F show the presence of two main distinct populations of T cells in meninges of naive mice. FIG. 1A is a representative contour plot of the CD4 T cell populations in the diaphragm and meninges of naive mice. FIG. 1B is a quantification of the percentage of CD44HighCD69+, CD44HighCD69 and CD44CD69 T cells in the diaphragm and meninges of naïve mice. Contrary to the diaphragm, the meninges have two major populations of T cells that can be discriminated by the expression of CD69. FIG. 1C is a representative histogram and quantification of CD11a expression by the meningeal T cell populations. FIG. 1D is a representative histogram and quantification of CD103 expression by meningeal T cell populations. FIG. 1E is a representative histogram and quantification of CD49a expression by meningeal T cell populations. FIG. 1F is a representative histogram and quantification of CD49s expression by meningeal T cell populations. Mean+/−SEM, N=3 mice per group. ***p<0.001, One-way ANOVA with Bonferroni post test. The CD69+ CD4 T cell population also expresses high levels of CD49a and CD11a.



FIGS. 2A-2J show that blockade of CD49a induces the transient accumulation of immune cells in the meninges. FIG. 2A is a representative histogram of CD49a expression by the different meningeal immune cell populations. FIG. 2B is a quantification of the percentage of CD49a expressing cells within the different immune cell populations in naive meninges. CD49a is not only expressed by the meningeal T cells but also by several other immune cells like monocytes/macrophages, NK, and NKT cells. FIG. 2C is a set of representative dot plots of T cells, NK, and NKT cells in the meninges of mice after IgG or CD49a blocking antibody injection. FIG. 2D is a quantification of the number of different immune cell populations in the meninges after IgG or CD49a blocking antibody injection. FIG. 2E is a set of representative images of CD3, CD4, and CD45 immunostaining in the meninges of mice after IgG or CD49a blocking antibody injection. The CD49a-injected mice exhibited higher levels of CD3e, CD4, and CD45 staining compared to the IgG-injected mice. FIGS. 2F-G is a quantification of the density of CD3+ T cells (FIG. 2F) and coverage of CD45+ cells (FIG. 2G) in the different regions of the meninges after IgG or CD49a treatment. FIG. 2H is a set of representative dot plots of BrdU incorporation in the CD4 T cells of the meninges after IgG or CD49a blocking antibody injection. The CD49a-injected mice exhibited higher levels of BrdU staining than the CD4 controls. FIG. 21 is a quantification of the percentage of BrdU+CD4 T cells in the meninges of IgG and CD49a treated mice. FIG. 2J is a quantification of the number of CD4 effector T cells (TCRb+CD4+NK1.1FoxP3) in the meninges of IgG and CD49a treated mice at different days post injection. Mean+/−SEM, N=3-4 mice per group. *p<0.05, **p<0.01, ***p<0.001, One way ANOVA or Two way ANOVA with Bonferoni post test.



FIGS. 3A-3E show that blockade of CD49a induces the parenchymal infiltration of immune cells. FIG. 3A is a series of representative images of brain sections of IgG and CD49a treated mice immunostained for immune infiltrate (CD45≥red) and astrocytes end feet


(AQP4≥green). Greater levels of CD45 staining (infiltrating immune cells) were observed in the brain parenchyma CD49a-treated mice compared to the IgG-treated control mice at 48 hours, and even greater levels of CD45 staining were observed in the CD49a-treated mice at 72 hours. FIG. 3B is a quantification of the density of CD45+ cells in the brain parenchyma of IgG and CD49a treated mice at different time post injection. FIG. 3C is a set of representative dot plots of CD45High and CD45Low expressing cells in the cortex and cerebellum after IgG and anti-CD49a treated mice. Greater proportions of cerebellum and cortex/hippocampus cells were CD45-high in the anti-CD49a-treated mice compared to IgG-treated controls. FIG. 3D is a quantification of the number of CD45High and CD45Low cells in the cortex/hippocampus and cerebellum of mice after IgG and CD49a blockade. FIG. 3E is a graph depicting gating of the phenotype of CD45High cells in the brain of CD49a treated mice. Mean+/−SEM, N=3-4 mice per group. *p<0.05; **p<0.01, One way ANOVA with Bonferoni post test.



FIGS. 4A-4E show that infiltration of cells is not due to blood brain barrier opening but rather trans-pial migration. FIG. 4A is a set of representative images of hemi-brain of IgG and anti-CD49a injected mice after i.v. Evans Blue injection. FIG. 4B is a quantification of the Evans Blue concentration in the brain of IgG and anti-CD49a injected mice. FIG. 4C is a set of representative images of meninges of IgG and anti-CD49a injected mice after i.v. Evans Blue injection. FIG. 4D is a diagram of the scheme of the photoconversion of meningeal KiKGR expressing cells. FIG. 4E is a representative dot plot of green (non photoconverted) and red (photoconverted) CD45High cells in the cortex of anti-CD49a treated mice, 24 h after injection.



FIG. 5 shows the effect of repeated anti-CD49a injection on the development of EAE. Mice were injected i.c.v. with anti-CD49a or IgG antibodies every other day from six days before the induction of EAE to fifteen days after induction. Clinical score of mice treated with IgG and anti-CD49a antibodies. Preliminary data suggest that CD49a treatment limited the development of clinical symptoms of EAE.



FIGS. 6A-B are each graphs illustrating effects of i.c.m. (intra cisterna magna) administration of anti-CD49a antibody on disease progression of EAE. Adult C57BI6 female mice were injected i.c.m. with 5 μl of anti-CD49a antibody (or IgG control) at day 8 post EAE induction (EAE was induced by 200 μg of MOG35-55+CFA). Mice were subsequently followed daily for disease progression. CD49a-treated mice appeared to have ameliorated progression of symptoms compared to IgG-treated mice.



FIGS. 7A-B are each graphs showing quantification of immune cells in surgically denervated mice. FIG. 7A shows quantification of the number of CD45+, T cells, and NK cells in the meninges of sham or denervated IgG and CD49a treated mice. (mean±s.e.m.; n=5 mice/group, ***p<0.001, two-way ANOVA). FIG. 7B shows quantification of geometric mean fluorescence intensity for ICAM1, VCAM1 and CD49a by the meningeal endothelial cells of sham or denervated IgG and CD49a treated mice. (mean±s.e.m.; n=5 mice/group, ***p<0.001, two-way ANOVA).



FIGS. 8A-D are each graphs showing quantification of immune cells in the SSS of mice that underwent meningeal lymphatic ablation with visodyne. FIG. 8A shows quantification of the CD45 coverage in the SSS of mice. (mean±s.e.m.; n=4/5 mice/group).



FIG. 8B shows quantification of the MHCII coverage in the SSS of mice. (mean±s.e.m.; n=4/5 mice/group). FIG. 8C shows quantification of the CD3e coverage in the SSS of mice. (mean±s.e.m.; n=4/5 mice/group). FIG. 8G shows quantification of the density of CD3e cells in the SSS of mice. (mean±s.e.m.; n=4/5 mice/group).



FIGS. 9A-C are each graphs showing clinical effects of anti-CD49a treatment in accordance with some embodiments herein. FIG. 9A shows clinical score of IgG and CD49a treated mice. (mean±s.e.m.; n=36/37 mice/group; **p<0.01; repeated measures two-way ANOVA). FIG. 9B shows incidence of clinical symptoms development of IgG and CD49a treated mice. (mean±s.e.m.; n=36/37 mice/group; ***p<0.001; Log-rank test). FIG. 9C shows clinical score score of symptomatic IgG and CD49a treated mice (mean±s.e.m.; n=24/35 mice/group).



FIGS. 9D-E are each graphs showing CD45+ expression patterns in IgG and CD49a treated mice induced with EAE. FIG. 9D shows quantification of the CD45 coverage, CD45+ cells density and density of CD45 cluster in the cerebellum and cortex of IgG and CD49a treated mice induced with EAE. (mean±s.e.m.; n=3/10 mice/group) FIG. 9E shows quantification of the CD45 coverage in the spinal cord of IgG and CD49a treated mice induced with EAE. (mean±s.e.m.; n=4/9 mice/group)



FIGS. 10A-G are each graphs showing cell counts in the meninges of adult WT mice 2 and CD49a KO 4 mice. Shown are endothelial cells (FIG. 10A), ILC I (FIG. 10B), NK cells (FIG. 10C), macrophages (FIG. 10D), ILC (FIG. 10E), and NKT cells (FIG. 10F).



FIGS. 11A-D are a series of graphs showing effects of inhibiting CD49a in models of nervous system injury in accordance with some embodiments.



FIGS. 12A-C are a series of graphs showing effects of inhibiting CD49a in models of AD in accordance with some embodiments.



FIGS. 13A-D are a series of graphs showing behavioral assays when CD49a is inhibited in accordance with some embodiments.



FIGS. 14A and 14B depict experimental data showing that anti-CD49a results in the migration of myeloid cells through the skull bone marrow channels. FIG. 14A provides representative images of myeloid cells (Ly6C/Ly6G+, red) in the skull bone marrow channels (Osteo sense, white). FIG. 14B is graph showing the quantification of the number of cells per channels in IgG and anti-CD49a treated mice. mean+/−s.e.m., N=4/5 mice per group. p=0.00277 Student t test.



FIGS. 15A-15F single cell characterizations of macrophages and myeloid cells from brain and meninges of CD49a-treated mice. FIG. 15A provides graphs to show clustering of the sequenced cells (tsne) by cell identity and group of origin. Violin plots of the markers were used to identify the cluster. FIG. 15B shows clustering of the meningeal macrophages, pathway enrichment analysis of the meningeal macrophages in CD49a treated mice, and fold change of chemokine expression in the CD49a treated macrophages. FIGS. 15C-15F show clustering of central nervous system (CNS) monocytes (FIG. 15C) and neutrophils (FIG. 15E) of IgG and string analysis of the differentially expressed genes in the monocytes (FIG. 15D) and neutrophils (FIG. 15F) of IgG and anti-CD49a mice.



FIGS. 16A to 16C show mass-cytometry analysis of the meninges and brain after anti-CD49a treatment and vascular extravasation blockade. FIG. 16A is a schematic to show the experimental design. FIG. 16B provides a representative t-sne plot of the meningeal and brain immune cells (CD45+) in the different group of mice. FIG. 16C shows quantification of the percentage of the different immune cells (% of CD45+) in the meninges and brain of IgG, anti-CD49a and anti-CD49a+anti-VLA4/LFA1 mice. mean+/−s.e.m. *p<0.05; **p<0.01; ***p<0.001 and ****p<0.0001, one-way ANOVA with Tukey's multiple comparison test.





DETAILED DESCRIPTION

Some embodiments provide methods of treating or preventing a neurological immunity disorder in an animal subject, comprising administering to the subject a therapeutically effective amount of a compound that inhibits integrin signaling. Some embodiments provide methods of treating or preventing a neurological immunity disorder in an animal subject, comprising administering to the subject a therapeutically effective amount of a compound that decreases CD49a function. Some embodiments provide method of treating a neurological immunity disorder in an animal subject, comprising administering to the subject a therapeutically effective amount of an antibody or antigen binding fragment which binds CD49a, for example a human or humanized antibody or antigen binding fragment thereof that binds specifically to CD49a. In some embodiments, the antibody or antigen binding fragment thereof does not bind specifically to any of CD49b, CD49c, CD49d, CD49e, and/or CD49f, including combinations of two or more of these. In some embodiments, the compound blocks integrin signaling. It is noted that wherever a method of treating a disease or disorder with a composition is described herein, the corresponding use of the composition for the treatment of the disease or disorder is also expressly contemplated. For example, wherever a method of treating a neurological immunity disorder with an antibody or antigen binding fragment that binds to CD49a is described herein, an antibody or antigen binding fragment that binds to CD49a for use in treating the neurological immunity disorder is also expressly contemplated.


It is to be understood that the embodiments described herein are not limited to specific analytical or synthetic methods as such may, of course, vary. It is also to be understood that the terminology used herein is for the purpose of describing particular embodiments only and is not intended to be limiting. Unless defined otherwise, all technical and scientific terms used herein have the meaning commonly understood by one of ordinary skill in the art to which this disclosure belongs, in view of the present disclosure.


“Neurological immunity disorders” is used herein according to its customary and ordinary meaning as would be understood by one of ordinary skill in the art in view of the specification, and encompasses neurological disorders with an immune component, for example, MS, Central Nervous System (CNS) injury, AD, and ASD. In some embodiments, the neurological immunity disorder comprises, consists essentially of, or consists of AD.


The terms “treatment,” “treating,” and the like have their customary and ordinary meaning as understood by one of skill in the art in view of this disclosure. They generally refer to obtaining a desired pharmacologic and/or physiologic effect. The effect may be prophylactic in terms of completely or partially preventing a disease or symptom thereof and/or may be therapeutic in terms of a partial or complete cure for a disease and/or adverse effect attributable to the disease. “Treatment” as used herein has is customary and ordinary meaning as understood by one of skill in the art in view of this disclosure, and encompasses any treatment of a disease or symptom in a mammal, and includes any one or more of the following: (a) preventing the disease or a symptom from occurring in a subject which may be predisposed to acquiring the disease or symptom but has not yet been diagnosed as having it; (b) inhibiting the disease or a symptom, e.g., arresting or slowing its development; (c) relieving the disease, e.g., causing regression of the disease; (d) ameliorating one or more symptoms of the disease; (e) delaying the onset of the disease; and (e) reducing the likelihood of occurrence of the disease . The therapeutic agent (such as an anti-CD49a antibody or binding fragment thereof) may be administered before, during or after the onset of disease or injury. The treatment of ongoing disease, where the treatment stabilizes or reduces the undesirable clinical symptoms of the patient, is of particular interest. Such treatment is desirably performed prior to complete loss of function in the affected tissues. The subject therapy will desirably be administered during the symptomatic stage of the disease, and in some cases after the symptomatic stage of the disease.


As used herein, the term “integrin” has its customary and ordinary meaning as understood by one of skill in the art in view of this disclosure. It refers to proteins that are transmembrane receptors that function to facilitate cell-cell and cell-extracellular matrix interactions. Examples of integrins and integrin subunits expressed in the meninges include CD49a, LFA1, itga11, CD49e, itga8, CD51, CD49f, and itga9.


As used herein, the singular forms “a,” “an,” and “the” include plural reference unless the context clearly dictates otherwise. Thus, for example, reference to “a reagent” is reference to one or more reagents and includes equivalents thereof known to those skilled in the art. Additionally, the term “comprises” is intended to include embodiments where the method, apparatus, composition, etc., consists essentially of and/or consists of the listed steps, components, etc. Similarly, the term “consists essentially of” is intended to include embodiments where the method, apparatus, composition, etc., consists of the listed steps, components, etc. It is further noted that the claims may be drafted to exclude any optional element. As such, this statement is intended to serve as antecedent basis for use of such exclusive terminology as “solely,” “only,” and the like in connection with the recitation of claim elements, or use of a “negative” limitation.


As used herein, the term “about” is used herein to provide literal support for the exact number that it precedes, as well as a number that differs from the given number without having a substantial effect in the context. If more numerical precision is desired, “about” refers to values that differ by less than±10%. In some embodiments, the term “about” indicates that the number differs from the given number by less than ±9%, 8%, 7%, 6%, 5%, 4%, 3%, 2%, or 1%.


It is appreciated that certain features described herein, which are, for clarity, described separately and/or in the context of separate embodiments, may also be provided in combination in a single embodiment. Conversely, various features of embodiments herein, which are, for brevity, described in the context of a single embodiment, may also be provided separately or in any suitable sub-combination. All combinations of the embodiments described herein are specifically embraced by the present disclosure and are disclosed herein just as if each and every combination was individually and explicitly disclosed. In addition, all sub-combinations of the various embodiments and elements thereof are also specifically embraced by the present disclosure and are disclosed herein just as if each and every such sub-combination was individually and explicitly disclosed herein.


In some embodiments, a method of treating, preventing, inhibiting, reducing the likelihood of, and/or delaying the onset of a neurological immunity disorder (such as AD) and/or a nervous system injury (such as CNS injury) in an animal subject is described. The method can comprise administering to the subject a therapeutically effective amount of a compound that inhibits integrin signaling. The compound can comprise, consist essentially of, or consist of an inhibitor of CD49a, for example an antibody or antigen binding fragment thereof that binds specifically to CD49a. In some embodiments, the antibody or antigen binding fragment thereof that binds specifically to CD49a is a monoclonal antibody. In some embodiments, the neurological immunity disorder is selected from the group autism spectrum disorder (ASD), multiple sclerosis (MS), Alzheimer's disease (AD), and nervous system injury (such as central nervous system (CNS) injury). In some embodiments, the method comprises treating or preventing the neurological immunity disorder, for example, ASD, MS, AD, and/or CNS injury. In some embodiments, the animal subject is a human. In some embodiments, the compound is formulated for administration to the CNS of the subject, for example intracerebroventricular administration. In some embodiments, the compound is administered to the CNS of the subject, for example intracerebroventricular administration. In some embodiments, the compound is not administered outside the CNS. In some embodiments, the is method for treating, preventing, inhibiting, reducing the likelihood of, and/or delaying the onset of AD and/or a nervous system injury in the animal subject. In some embodiments, the method is for treating, preventing, inhibiting, reducing the likelihood of, and/or delaying the onset of AD in the animal subject. In some embodiments, the method is for treating, preventing, inhibiting, reducing the likelihood of, and/or delaying the onset of nervous system injury (such as CNS injury) in the animal subject. Example nervous system injuries can comprise, consist essentially of, or consist of a traumatic injury (such as nerve crush) and/or injury by a chemical agent such as a drug or toxin. In some embodiments, the nervous system injury comprises, consists essentially of or consists of a traumatic injury (such as nerve crush).


In some embodiments, the method treats prevents, inhibits, reduces the likelihood of, and/or delays the onset of a neurological immunity disorder in a human subject. In some embodiments, the method comprises administering to the subject a therapeutically effective amount of a compound that inhibits CD49a signaling. In some embodiments, the compound comprises, consists essentially of, or consists of an antibody or antigen binding fragment thereof that binds specifically to CD49a. In some embodiments, the compound comprises, consists essentially of, or consists of a monoclonal antibody or antigen binding fragment thereof that binds specifically to CD49a. In some embodiments, the neurological immunity disorder is selected from the group consisting of ASD, MS, AD, and CNS injury. In some embodiments, the method comprises treating or preventing the neurological immunity disorder. In some embodiments, the compound is formulated for administration to the CNS of the subject, for example intracerebroventricular administration. In some embodiments, the compound is administered to the CNS of the subject, for example intracerebroventricular administration. In some embodiments, the compound is not administered outside the CNS.


In some embodiments, the method treats, prevents, inhibits, reduces the likelihood of, and/or delays the onset of ASD in a human subject. In some embodiments, the method comprises administering to the subject a therapeutically effective amount of a compound that inhibits CD49a signaling. In some embodiments, the compound comprises, consists essentially of, or consists of an antibody or antigen binding fragment thereof that binds specifically to CD49a. In some embodiments, the compound comprises, consists essentially of, or consists of a monoclonal antibody or antigen binding fragment thereof that binds specifically to CD49a. In some embodiments, the antibody, e.g., monoclonal antibody or antigen binding fragment thereof does not specifically bind to any of CD49b, CD49c, CD49d, Cd49e, and/or CD49f. In some embodiments, the method comprises treating or preventing the ASD. In some embodiments, the compound is formulated for administration to the CNS of the subject, for example intracerebroventricular administration. In some embodiments, the compound is administered to the CNS of the subject, for example intracerebroventricular administration. In some embodiments, the compound is not administered outside the CNS.


In some embodiments, the method treats, prevents, inhibits, reduces the likelihood of, and/or delays the onset of MS in a human subject. In some embodiments, the method comprises administering to the subject a therapeutically effective amount of a compound that inhibits CD49a signaling. In some embodiments, the compound comprises, consists essentially of, or consists of an antibody or antigen binding fragment thereof that binds specifically to CD49a. In some embodiments, the compound comprises, consists essentially of, or consists of a monoclonal antibody or antigen binding fragment thereof that binds specifically to CD49a. In some embodiments, the antibody, e.g., monoclonal antibody or antigen binding fragment thereof does not bind to any of CD49b, CD49c, CD49d, Cd49e, and/or CD49f. In some embodiments, the method comprises treating or preventing the MS. As shown in Example 4, 5, and 7 and FIGS. 5, 6A-B, and 9A-C, administering an antibody inhibitor of CD49a signaling to an EAE subject (a model of MS) in accordance with some embodiments herein delayed the onset of EAE, reduced the incidence of EAE, and improved the clinical score of the EAE subject. Accordingly, it is contemplated that administering an inhibitor of CD49a (such as an antibody or antigen binding fragment thereof that binds specifically to CD49a) in accordance with some embodiments herein can delay the onset of, reduce the incidence of, and/or ameliorate symptoms of MS. In some embodiments, the compound is formulated for administration to the CNS of the subject, for example intracerebroventricular administration. In some embodiments, the compound is administered to the CNS of the subject, for example intracerebroventricular administration. In some embodiments, the compound is not administered outside the CNS.


In some embodiments, the method treats, prevents, inhibits, reduces the likelihood of, and/or delays the onset of AD in a human subject. The method can comprise administering to the subject a therapeutically effective amount of a compound that inhibits CD49a signaling. The compound can comprise, consist essentially of, or consist of an antibody or antigen binding fragment thereof that binds specifically to CD49a. In some embodiments, the compound comprises, consists essentially of, or consists of a monoclonal antibody or antigen binding fragment thereof that binds specifically to CD49a. In some embodiments, the antibody, e.g., monoclonal antibody or antigen binding fragment thereof does not bind to any of CD49b, CD49c, CD49d, Cd49e, and/or CD49f. In some embodiments, the method comprises treating or preventing the AD. In some embodiments, the compound is formulated for administration to the CNS of the subject, for example intracerebroventricular administration. In some embodiments, the compound is administered to the CNS of the subject, for example intracerebroventricular administration. In some embodiments, the compound is not administered outside the CNS.


In some embodiments, the method treats, prevents, inhibits, and/or delays the onset of nervous system injury, for example CNS injury in a human subject. The method can comprise administering to the subject a therapeutically effective amount of a compound that inhibits CD49a signaling. The compound can comprise, consist essentially of, or consist of an antibody or antigen binding fragment thereof that binds specifically to CD49a. In some embodiments, the compound comprises, consists essentially of, or consists of a monoclonal antibody or antigen binding fragment thereof that binds specifically to CD49a. In some embodiments, the antibody, e.g., monoclonal antibody or antigen binding fragment thereof does not bind to any of CD49b, CD49c, CD49d, Cd49e, and/or CD49f. In some embodiments, the method comprises treating or preventing the nervous system injury (such as


CNS injury). In some embodiments, the compound is formulated for administration to the CNS of the subject, for example intracerebroventricular administration. In some embodiments, the compound is administered to the CNS of the subject, for example intracerebroventricular administration. In some embodiments, the compound is not administered outside the CNS.


In the method or use of some embodiments, the compound that inhibits integrin signaling is administered after the onset of the neurological immunity disorder (such as AD) and/or nervous system injury (such as CNS injury), for example at least about 8 days after the onset of the neurological immunity disorder, for example at least 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, or 28 days, including any ranges between any two of the listed values, for example, including but not limited to the following ranges which are provided for exemplary purposes only: 5-28 days, 5-21 days, 5-14 days, 5-7 days, 7-28 days, 7-21 days, 7-14 days, 10-28 days, 10-21 days, or 10-14 days. In the method or use of some embodiments, the administration of the compound after the onset of the neurological immunity disorder and/or nervous system injury reduces clinical symptoms of the neurological immunity disorder (such as AD) and/or nervous system injury, which can be measured, for example, by a clinical score. In the method or use of some embodiments, the compound that inhibits integrin signaling comprises, consists essentially of, or consists of an antibody or antigen binding fragment thereof that binds specifically to CD49a. In the method or use of some embodiments, the compound that inhibits integrin signaling comprises, consists essentially of, or consists of a CD49a inhibiting (or blocking) antibody.


In the method or use of some embodiments, the method further comprises identifying a subject in need of said treatment. In further embodiments, the subject in need of said treatment is susceptible to or suffering form a neurological immunity disorder selected from the group consisting of autism spectrum disorder (ASD), multiple sclerosis (MS), Alzheimer's disease (AD), and central nervous system (CNS) injury. Identification of such subjects may be made using techniques known to a person of ordinary skill in the art. In some embodiments, the subject in need of said treatment is susceptible to or suffering from AD and/or nervous system injury (such as CNS injury). In some embodiments, the subject in need of said treatment is susceptible to or suffering from nervous system injury (such as CNS injury). In some embodiments, the subject in need of said treatment is susceptible to or suffering from AD.


The term “subject” is used herein according to its customary and ordinary meaning as would be understood by one of ordinary skill in the art in view of the specification. It refers to an animal, for example a mammal, such as a human. In the method or use of some embodiments, the animal subject is a human.


In the method or use of some embodiments, inhibiting (or blocking) integrin signaling includes decreasing function of an integrin and/or decreasing function of an integrin subunit such as CD49a. In the method or use of some embodiments, the compound that inhibits integrin signaling decreases the function of a protein selected from the list consisting of CD49a, LFA1, itga11, CD49e, itga8, CD51, CD49f, and itga9. In the method or use of some embodiments, the compound that inhibits integrin signaling decreases CD49a function. In the method or use of some embodiments, the compound binds specifically to CD49a.


In the method or use of some embodiments, the compound that inhibits integrin signaling is an antibody or an antigen binding fragment which binds to an integrin or an integrin subunit. In some embodiments, the antibody or the antigen binding fragment binds a protein selected from the list consisting of CD49a, LFA1, itga11, CD49e, itga8, CD51, CD49f, and itga9. In some embodiments, the antibody or the antigen binding fragment binds to CD49a. In some embodiments, the antibody or the antigen binding fragment specifically binds a protein selected from the list consisting of CD49a, LFA1, itgal 1, CD49e, itga8, CD51, CD49f, and itga9. In some embodiments, the antibody or the antigen binding fragment specifically binds CD49a. In some embodiments, the antibody or the antigen binding fragments is a monoclonal antibody, for example a humanized antibody or human antibody.


An antibody (interchangeably used in plural form) is used herein according to its customary and ordinary meaning as would be understood by one of ordinary skill in the art in view of the specification. It refers to an immunoglobulin molecule capable of specific binding to a target, such as a carbohydrate, polynucleotide, lipid, polypeptide, etc., through at least one antigen recognition site, which is typically located in the variable region of the immunoglobulin molecule. As used herein, the term “antibody”, e.g., anti-CD49a antibody, encompasses not only intact (e.g., full-length) polyclonal or monoclonal antibodies, but also antigen-binding fragments thereof (such as Fab, Fab′, F(ab′)2, Fv), single chain (scFv), mutants thereof, fusion proteins comprising an antibody portion, humanized antibodies, chimeric antibodies, diabodies, nanobodies, linear antibodies, single chain antibodies, multispecific antibodies (e.g., bispecific antibodies) and any other modified configuration of the immunoglobulin molecule that comprises an antigen recognition site of the required specificity, including glycosylation variants of antibodies, amino acid sequence variants of antibodies, and covalently modified antibodies. An antibody, e.g., anti-CD49a antibody in accordance with methods, uses, compositions, and pharmaceutical compositions of some embodiments herein, includes an antibody of any class, such as IgD, IgE, IgG, IgA, or IgM (or sub-class thereof), and the antibody need not be of any particular class. Depending on the antibody amino acid sequence of the constant domain of its heavy chains, immunoglobulins can be assigned to different classes. There are five major classes of immunoglobulins: IgA, IgD, IgE, IgG, and IgM, and several of these may be further divided into subclasses (isotypes), e.g., IgG1, IgG2, IgG3, IgG4, IgA1 and IgA2. The heavy-chain constant domains that correspond to the different classes of immunoglobulins are called alpha, delta, epsilon, gamma, and mu, respectively. The subunit structures and three-dimensional configurations of different classes of immunoglobulins are well known.


The base structure of an antibody is a tetramer, which includes two heavy chains and two light chains. Each chain comprises a constant region, and a variable region. Generally, the variable region, heavy chain variable region (VH) and a light chain variable region (VL), is responsible for binding specificity of the antibody. In a typical antibody, each variable region comprises three complementarity determining regions (CDRs) flanked by four framework (FR) regions. As such, an typical antibody variable region has six CDRs (three heavy chain CDRs, three light chain CDRs), some or all of which are generally involved in binding interactions by the antibody. Each VH and VL comprises three CDRs and four FRs, arranged from amino-terminus to carboxy-terminus in the following order: FR1, CDR1, FR2, CDR2, FR3, CDR3, FR4. The framework regions and CDRs can be precisely identified using methodology known in the art, for example, by the Kabat defmition, the Chothia definition, the AbM defmition, and/or the contact defmition, all of which are well known in the art. See, e.g., Kabat, E. A., et al. (1991) Sequences of Proteins of Immunological Interest, Fifth Edition, U.S. Department of Health and Human Services, NIH Publication No. 91-3242, Chothia et al., (1989) Nature 342:877; Chothia, C. et al. (1987) J. Mol. Biol. 196:901-917, Al-lazikani et al (1997) J. Molec. Biol. 273:927-948; and Almagro, J. Mol. Recognit. 17:132-143 (2004). See also hgmp.mrc.ac.uk and bioinforg.uk/abs).


The anti-CD49a antibody suitable for methods, uses, compositions, and pharmaceutical compositions of embodiments described herein may be a full-length antibody, which contains two heavy chains and two light chains, each including a variable domain and a constant domain. Alternatively, the anti-CD49a antibody can be an antigen-binding fragment of a full-length antibody. Examples of binding fragments encompassed within the term “antigen-binding fragment” of a full length antibody include (i) a Fab fragment, a monovalent fragment consisting of the VL, VH, CL and CH1 domains; (ii) a F(ab′)2 fragment, a bivalent fragment including two Fab fragments linked by a disulfide bridge at the hinge region; (iii) a Fd fragment consisting of the VH and CH1 domains; (iv) a Fv fragment consisting of the VL and VH domains of a single arm of an antibody, (v) a dAb fragment (Ward et al., (1989) Nature 341:544-546), which consists of a VH domain; and (vi) an isolated complementarity determining region (CDR) that retains functionality. Furthermore, although the two domains of the Fv fragment, VL and VH, are coded for by separate genes, they can be joined, using recombinant methods, by a synthetic linker that enables them to be made as a single protein chain in which the VL and VH regions pair to form monovalent molecules known as single chain Fv (scFv). See e.g., Bird et al. (1988) Science 242:423-426; and Huston et al. (1988) Proc. Natl. Acad. Sci. USA 85:5879-5883.


Anti-CD49a antibodies and methods for producing them are known in the art. For example, US20160017043 provides antibody sequences for anti-CD49a antibodies, which publication is incorporated by reference in its entirety herein, including the drawings and the sequence listing therein. In some embodiments, the anti-CD49a antibody comprises a VL domain of the VL domain shown in FIG. 2A of US20160017043 and a VH domain of the VH domain shown in FIG. 2B of US20160017043. In some embodiments, the anti-CD49a antibody comprises a VL domain comprising a light chain CDR1, CDR2, and CDR3 that are light chain CDRs in the sequence shown in FIG. 2A of US20160017043 and a VH domain comprising a heavy chain CDR1, CDR2, and CDR3 that are heavy chain CDRs the sequence shown in FIG. 2B of US20160017043. In some embodiments, the anti-CD49a antibody comprises a VL domain of the VL domain shown in FIG. 3 of US20160017043 and a VH domain of the VH domain shown in FIG. 4 of US20160017043. In some embodiments, the anti-CD49a antibody comprises a VL domain comprising a light chain CDR1, CDR2, and CDR3 that are light chain CDRs in the sequence shown in FIG. 3 of US20160017043 and a VH domain comprising a heavy chain CDR1, CDR2, and CDR3 that are heavy chain CDRs in the sequence shown in FIG. 4 of US20160017043. In some embodiments, the CDRs are according to the defmition of Kabat, Chothia, the Abm, or the contact defmition. In some embodiments the anti-CD49a antibody is a human or humanized antibody as described herein.


In some embodiments, the anti-CD49a antibody comprises a VL domain that has at least 80%, at least 85%, at least 90% (e.g., 91%, 92%, 93%, 94%), at least 95% (e.g., 96%, 97%, 98%, 99%, 100%) sequence identity with the VL domain shown in FIG. 2A of


US20160017043 and a VH domain that has at least 80%, at least 85%, at least 90% (e.g., 91%, 92%, 93%, 94%), at least 95% (e.g., 96%, 97%, 98%, 99%, 100%) sequence identity with the VH domain shown in FIG. 2B of US20160017043. In some embodiments, the anti-CD49a antibody comprises a VL domain having a sequence that differs from the VL domain shown in FIG. 2A of US20160017043 by 1, 2, 3, 4, 5, 6, 7, 9, or 10 amino acid residues and a VH domain having a sequence that differs from the VH domain shown in FIG. 2B of US20160017043 by 1, 2, 3, 4, 5, 6, 7, 9, or 10 amino acid residues. In some embodiments, the anti-CD49a antibody comprises a VL domain having a sequence that differs from the VL domain shown in FIG. 2A of US20160017043 by 1, 2, 3, 4, 5, 6, 7, 9, or 10 amino acid residues and a VH domain having a sequence of the VH domain shown in FIG. 2B of US2016001704. In some embodiments, the anti-CD49a antibody comprises a VL domain having a sequence of the VL domain shown in FIG. 2A of US20160017043, and a VH domain having a sequence that differs from the VH domain shown in FIG. 2B of US20160017043 by 1, 2, 3, 4, 5, 6, 7 9. or 10 amino acid residues. In some embodiments, the anti-CD49a antibody comprises a VL domain comprising a light chain CDR1, CDR2, and CDR3 that are light chain CDRs having at least 80%, at least 85%, at least 90% (e.g., 91%, 92%, 93%, 94%), at least 95% (e.g., 96%, 97%, 98%, 99%, 100%) sequence identity with the light chain CDRs of the sequence shown in FIG. 2A of US20160017043 and a VH domain comprising a heavy chain CDR1, CDR2, and CDR3 that are heavy chain CDRs having at least 80%, at least 85%, at least 90% (e.g., 91%, 92%, 93%, 94%), at least 95% (e.g., 96%, 97%, 98%, 99%, 100%) sequence identity with the heavy chain CDRs of the sequence shown in FIG. 2B of US20160017043. In some embodiments, the anti-CD49a antibody comprises a VL domain comprising a light chain CDR1, CDR2, and CDR3 that are light chain CDRs having a sequence that differs from the sequence of the light chain CDRs shown in FIG. 2A of US20160017043 by 0, 1, 2. 3, 4, 5, 6, 7. 9, or 10 amino acid residues and a VH domain comprising a heavy chain CDR1, CDR2, and CDR3 that are heavy chain CDRs having a sequence that differs from the sequence of the heavy chain CDRs shown in FIG. 2B of US20160017043 by 0, 1, 2, 3, 4, 5, 6, 7, 9, or 10 amino acid residues. In some embodiments, the anti-CD49a antibody comprises a VL domain having at least 80%, at least 85%, at least 90% (e.g., 91%, 92%, 93%, 94%), at least 95% (e.g., 96%, 97%, 98%, 99%, 100%) sequence identity with the VL domain shown in FIG. 3 of US20160017043 and a VH domain having at least 80%, at least 85%, at least 90% (e.g., 91%, 92%, 93%, 94%), at least 95% (e.g., 96%, 97%, 98%, 99%, 100%) sequence identity with the VH domain shown in FIG. 4 of US20160017043. In some embodiments, the anti-CD49a antibody comprises a VL domain having a sequence that differs from the VL domain shown in FIG. 3 of US20160017043 by 1, 2, 3, 4, 5, 6, 7, 9, or 10 amino acid residues and a VH domain having a sequence that differs from the VH domain shown in FIG. 4 of US20160017043 by 1, 2, 3, 4, 5, 6, 7, 9, or 10 amino acid residues. In some embodiments, the anti-CD49a antibody comprises a VL domain having a sequence of the VL domain shown in FIG. 3 of US20160017043 and a VH domain having a sequence that differs from the VH domain shown in FIG. 4 of US20160017043 by 1, 2 3, 4, 5, 6, 7, 9, or 10 amino acid residues. In some embodiments, the anti-CD49a antibody comprises a VL domain having a sequence that differs from the VL domain shown in FIG. 3 of US20160017043 by 1, 2, 3, 4, 5, 6, 7, 9, or 10 amino acid residues and a VH domain of the VH domain shown in FIG. 4 of US20160017043. In some embodiments, the anti-CD49a antibody comprises a VL domain comprising a light chain CDR1, CDR2, and CDR3 that are light chain CDRs having at least 80%, at least 85%, at least 90% (e.g., 91%, 92%, 93%, 94%), at least 95% (e.g., 96%, 97%, 98%, 99%, 100%) sequence identity with the sequence shown in FIG. 3 of US20160017043 and a VH domain comprising a heavy chain CDR1, CDR2, and CDR3 that are heavy chain CDRs having at least 80%, at least 85%, at least 90% (e.g., 91%, 92%, 93%, 94%), at least 95% (e.g., 96%, 97%, 98%, 99%, 100%) sequence identity with the heavy chain CDR sequences shown in FIG. 4 of US20160017043. In some embodiments, the anti-CD49a antibody comprises a VL domain comprising a light chain CDR1, CDR2, and CDR3 that are light chain CDRs having a sequence that differs from the light chain CDR sequences shown in FIG. 3 of US20160017043 by 1, 2, 3, 4, 5, 6, 7, 9, or 10 amino acid residues and a VH domain comprising a heavy chain CDR1, CDR2, and CDR3 that are heavy chain CDRs having a sequence that differs from the heavy chain CDR sequences shown in FIG. 4 of US20160017043 by 1, 2, 3, 4, 5, 6, 7, 9, or 10 amino acid residues.


A number of approaches are available for producing suitable antibodies that specifically bind to CD49a in accordance with methods, uses, compositions, and pharmaceutical compositions of embodiments herein. For example, in some embodiments, a host organism is immunized with an antigen comprising, consisting essentially of, or consisting of CD49a. By way of example, a sequence of CD49a (which may also be referred to as Integrin alpha-1 or VLA-1) is available as Uniprot accession no. P56199 (SEQ ID NO: 1 MAPRPRARPGVAVACCWLLTVVLRCCVSFNVDVKNSMTFSGPVEDMFGYTVQQYE NEEGKWVLIGSPLVGQPKNRTGDVYKCPVGRGESLPCVKLDLPVNTSIPNVTEVKEN MTFGSTLVTNPNGGFLACGPLYAYRCGHLHYTTGICSDVSPTFQVVNSIAPVQECSTQ LDIVIVLDGSNSIYPWDSVTAFLNDLLERMDIGPKQTQVGIVQYGENVTHEFNLNKYS STEEVLVAAKKIVQRGGRQTMTALGIDTARKEAFTEARGARRGVKKVMVIVTDGES HDNHRLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSD ELALVTIVKTLGERIFALEATADQSAASFEMEMSQTGFSAHYSQDWVMLGAVGAYD WNGTVVMQKASQIIIPRNTTFNVESTKKNEPLASYLGYTVNSATASSGDVLYIAGQPR YNHTGQVIIYRMEDGNIKILQTLS GEQIGSYFGSILTTTDIDKDSNTDILLVGAPMYMG TEKEEQGKVYVYALNQTRFEYQMSLEPIKQTCCSSRQHNSCTTENKNEPCGARFGTA IAAVKDLNLDGFNDIVIGAPLEDDHGGAVYIYHGSGKTIRKEYAQRIPSGGDGKTLKF FGQSIHGEMDLNGDGLTDVTIGGLGGAALFWSRDVAVVKVTMNFEPNKVNIQKKNC HMEGKETVCINATVCFDVKLKSKEDTIYEADLQYRVTLDSLRQISRSFFSGTQERKVQ RNITVRKSECTKHSFYMLDKHDFQDSVRITLDFNLTDPENGPVLDDSLPNSVHEYIPF AKDCGNKEKCISDLSLHVATTEKDLLIVRSQNDKFNVSLTVKNTKDSAYNTRTIVHY SPNLVFS GIEAIQKDSCESNHNITCKVGYPFLRRGEMVTFKILFQFNTSYLMENVTIYL SATSDSEEPPETLSDNVVNISIPVKYEVGLQFYSSASEYHISIAANETVPEVINSTEDIG NEINIFYLIRKSGSFPMPELKLSISFPNMTSNGYPVLYPTGLSSSENANCRPHIFEDPFSI NSGKKMTTSTDHLKRGTILDCNTCKFATITCNLTSSDISQVNVSLILWKPTFIKSYFSSL NLTIRGELRSENASLVLSSSNQKRELAIQISKDGLPGRVPLWVILLSAFAGLLLLMLLIL ALWKIGFFKRPLKKKMEK). By way of example, a polypeptide comprising, consisting essentially of, or consisting of the amino acid sequence of SEQ ID NO: 1 sequence can be used to immunize a host in order to produce antibodies that bind specifically to CD49a in accordance with some embodiments. The host organism can be a non-human mammal such as a mouse, rat, guinea pig, rabbit, donkey, goat, or sheep. Isolated antibody-producing cells can be obtained from the host organism, and the cells (or antibody-encoding nucleic acids thereof) can be screened for antibodies that binds specifically to CD49a. In some embodiments, antibody-producing cells are immortalized using hybridoma technology, and the resultant hybridomas are screened for antibodies that bind specifically to CD49a. In some embodiments, antibody-encoding nucleic acids are isolated from antibody-producing cells, and screened for antibodies that bind specifically to CD49a. An example protocol for screening human B cell nucleic acids is described in Huse et al., Science 246:1275-1281 (1989), which is hereby incorporated by reference in its entirety. In some embodiments, nucleic acids of interest are identified using phage display technology (See, e.g., Dower et al., WO 91/17271 and McCafferty et al., WO 92/01047, each of which is hereby incorporated by reference in its entirety). Phage display technology can also be used to mutagenize variable regions (or portions thereof such as CDRs) of antibodies previously shown to have affmity for CD49a. Variant antibodies can then be screened by phage display for antibodies having desired affmity to CD49a. In some embodiments, the antibody that specifically binds to CD49a is formatted as an antigen binding fragment. Example antigen binding fragments suitable for methods, uses, compositions, and pharmaceutical compositions of some embodiments can comprise, consist essentially of, or consist of a construct selected from the group consisting of Fab, Fab′, Fab′-SH, F(ab′)2, and Fv fragments; minibodies; diabodies; and single-chain fragments such as single-chain Fv (scFv) molecules. Bispecific or multispecific antibodies or antigen binding fragments are also contemplated in accordance with methods, uses, compositions, and pharmaceutical compositions of some embodiments.


In some embodiments, for example if human monoclonal antibodies are of interest, the host comprises genetic modifications to produce or facilitate the production of human immunoglobulins. For example, XenoMouseTM mice were engineered with fragments of the human heavy chain locus and kappa light chain locus, respectively, which contained core variable and constant region sequences (described in detail Green et al. Nature Genetics 7:13-21 (1994), which is hereby incorporated by reference in its entirety). For example, mice have been engineered to produce antibodies comprising a human variable regions and mouse constant regions. The human heavy chain and light chain variable regions can then be reformatted onto a human constant region to provide a fully human antibody (described in detail in U.S. Pat. No. 6,787,637, which is hereby incorporated by reference in its entirety), For example, in a “minilocus” approach, an exogenous Ig locus is mimicked through the inclusion of pieces (individual genes) from the Ig locus. Thus, one or more VH genes, one or more DH genes, one or more JH genes, a mu constant region, and a second constant region (preferably a gamma constant region) are formed into a construct for insertion into an animal such as a mouse (See, e.g,. U.S. Pat. No. 5,545,807, which is hereby incorporated by reference in its entirety). Another approach, includes reconstituting SCID mice with human lymphatic cells, e.g., B and/or T cells. The mice are then immunized with an antigen and can generate an immune response against the antigen (See, e.g., U.S. Pat. No. 5,476,996, which is hereby incorporated by reference in its entirety).


In some embodiments, a host monoclonal antibody is formatted as a chimer antibody or is humanized, so that the antibody comprises at least some human sequences. By way of example, By way of example, an approach for producing humanized antibodies can comprise


CDR grafting. For example, an antigen can be delivered to a non-human host (for example a mouse), so that the host produces antibody against the antigen. In some embodiments, monoclonal antibody is generated using hybridoma technology. In some embodiments, V gene utilization in a single antibody producing cell of the host is determined. The CDR's of the host antibody can be grafted onto a human framework. The V genes utilized in the non-human antibody can be compared to a database of human V genes, and the human V genes with the highest homology can be selected, and incorporated into a human variable region framework. See, e.g., Queen, U.S. Pat. No. 5,585,089, which is hereby incorporated by reference in its entirety.


Isolated oligonucleotides encoding a antibody of interest can be expressed in an expression system, such as a cellular expression system or a cell-free system in order to produce an antibody that binds specifically to CD49a in accordance with methods, uses, compositions, and pharmaceutical compositions of embodiments herein. Exemplary cellular expression systems include yeast (e.g., mammalian cells such as CHO cells or BHK cells, E. coli, insect cells, Saccharomyces, Pichia) transformed with recombinant yeast expression vectors containing the nucleotide sequences encoding antibodies; insect cell systems infected with recombinant virus expression vectors (e.g., baculovirus) containing sequences encoding antibodies; plant cell systems infected with recombinant virus expression vectors (e.g., cauliflower mosaic virus, CaMV; tobacco mosaic virus, TMV) or transformed with recombinant plasmid expression vectors (e.g., Ti plasmid) containing nucleotide sequences encoding antibodies; mammalian cell systems (e.g., COS, CHO, BHK, 293, 3T3) harboring recombinant expression constructs containing promoters derived from the genome of mammalian cells (e.g., metallothionein promoter) or from mammalian viruses.


In the method or use of some embodiments, the CD49a inhibiting (or blocking) antibody is administered after the onset of the neurological immunity disorder. In the method or use of some embodiments, the administration of the CD49a inhibiting (or blocking) antibody after the onset of the neurological immunity disorder reduces clinical symptoms of the neurological immunity disorder, which can be measured, for example, by a clinical score.


In some aspects, the present invention is based upon, at least in part, the surprising discovery that an inhibitor of an integrin, e.g., anti-CD49a antibody, confers neuroprotective effect to a neuron. Accordingly, the present invention provides methods of reducing neuron death in a neural tissue. In certain embodiments, the methods of the present invention reduces neuron death by at least about 10%, about 20%, about 30%, about 40%, about 50%, about 60%, about 70%, about 80%, about 90%, or about 99%. It is intended that values and ranges intermediate to the recited values are also intended to be part of this invention.


In some other aspects, the present invention provides methods of selectively increasing the number of myeloid cells in a neural tissue. In certain embodiments, the methods of the present invention selectively increase myeloid cells in the neural tissue by at least about 10%, about 20%, about 30%, about 40%, about 50%, about 60%, about 70%, about 80%, about 90%, about 99%, about one fold, about two folds, about four folds, or about ten folds. It is intended that values and ranges intermediate to the recited values are also intended to be part of this invention. In still other aspects, the present invention provides methods of modulating gene expression profile in an immune cell within a neural tissue. In certain embodiments, the methods of the present invention increase the expression of certain genes by at least about 10%, about 20%, about 30%, about 40%, about 50%, about 60%, about 70%, about 80%, about 90%, about 99%, about one (1) fold, about two (2) fold, about four (4) fold, about ten (10) fold, about twenty (20) fold, about fifty (50) fold, or about one hundred (100) fold. In certain embodiments, the upregulated genes encode cytokines that act as chemoattractant for myeloid cells. In some other embodiments, the upregulated genes encode proteins that have neuroprotective effects. In some embodiments, the genes are selected from the group consisting of Cxcl2, Ccl3, Cc14, Cxcl16, Ccr2, Spp1, Arg1, Trem2, and Tgfbi. In some other embodiments, the methods of the present invention decrease the expression of certain genes by at least about 10%, about 20%, about 30%, about 40%, about 50%, about 60%, about 70%, about 80%, about 90%, or about 99%.


Compositions and Pharmaceutical Compositions

According to some embodiments, a composition or pharmaceutical composition comprises a compound or therapeutic agent and a pharmaceutically acceptable carrier, adjuvant, or vehicle. In some embodiments, the compound or therapeutic agent of the composition or pharmaceutical composition comprises an agent or compound that inhibits (or blocks) integrin signaling. In some embodiments, the compound or therapeutic agent of the composition or pharmaceutical composition comprises an agent or compound that decreases or inhibits CD49a function. In some embodiments, the compound or therapeutic agent of the composition or pharmaceutical composition comprises an antibody or antigen binding fragment which binds CD49a. In some embodiments, the compound or therapeutic agent of the composition or pharmaceutical composition comprises, consists essentially of, or consists of an antibody or antigen binding fragment thereof that binds specifically to CD49a. The antibody or antigen binding fragment thereof that binds specifically to CD49a can be as described herein. In some embodiments the compound or therapeutic agent of the composition or pharmaceutical composition comprises, consists essentially of, or consists of a monoclonal antibody or antigen binding fragment thereof that binds specifically to CD49a. In some embodiments, the composition or pharmaceutical composition is for use in treating, preventing, inhibiting or ameliorating the relevant disease, disorder, or condition in a subject in need thereof, e.g., neurological immunity disorder or a symptom thereof, such as autism spectrum disorder (ASD), multiple sclerosis (MS), Alzheimer's disease (AD), and/or central nervous system (CNS) injury. In some embodiments, the composition or pharmaceutical composition is for use in treating, preventing, inhibiting or ameliorating AD and/or nervous system injury (such as CNS injury). It is contemplated that a composition or pharmaceutical composition comprising, consisting essentially of, or consisting of compound that decreases or inhibits CD49a (for example, and anti-CD49a antibody as described herein) can be used in any method of treating, preventing, inhibiting or ameliorating the relevant disease, disorder, or condition in a subject in need thereof, e.g., neurological immunity disorder or a symptom thereof, such as autism spectrum disorder (ASD), multiple sclerosis (MS), Alzheimer's disease (AD), and/or central nervous system (CNS) injury as described herein. The amount of therapeutic agent in the composition or pharmaceutical composition of some embodiments is an amount effective to treat, prevent, inhibit or ameliorate the relevant disease, disorder, or condition in a subject in need thereof, e.g., neurological immunity disorder or a symptom thereof, such as autism spectrum disorder (ASD), multiple sclerosis (MS), Alzheimer's disease (AD), and/or central nervous system (CNS) injury. The amount of therapeutic agent in the composition or pharmaceutical composition of some embodiments is an amount effective to treat, prevent, inhibit or ameliorate AD and/or nervous system injury (for example, AD, nervous system injury, or AD or nervous system injury). In some embodiments, a composition or pharmaceutical composition is formulated for administration to a subject in need of such composition. In some embodiments, the composition or pharmaceutical composition is formulated for oral administration to a subject. In some embodiments, the composition or pharmaceutical composition is formulated for injection into a subject. In some embodiments, the composition or pharmaceutical composition is formulated for topical application to the skin of the subject. In some embodiments, the subject is an animal, for example a mammal, such as a human.


The term “pharmaceutically acceptable carrier,” “adjuvant,” or “vehicle” is used herein according to its customary and ordinary meaning as would be understood by one of ordinary skill in the art in view of the specification. It refers to a non- toxic carrier, adjuvant, or vehicle that does not destroy the pharmacological activity of the compound or therapeutic with which it is formulated. Pharmaceutically acceptable carriers, adjuvants or vehicles that may be used in the compositions and pharmaceutical compositions of some embodiments herein include, but are not limited to, ion exchangers, alumina, aluminum stearate, lecithin, serum proteins, such as human serum albumin, buffer substances such as phosphates, glycine, sorbic acid, potassium sorbate, partial glyceride mixtures of saturated vegetable fatty acids, water, salts or electrolytes, such as protamine sulfate, disodium hydrogen phosphate, potassium hydrogen phosphate, sodium chloride, zinc salts, colloidal silica, magnesium trisilicate, polyvinyl pyrrolidone, cellulose-based substances, polyethylene glycol, sodium carboxymethylcellulose, polyacrylates, waxes, polyethylene-polyoxypropylene-block polymers, polyethylene glycol and wool fat.


In some embodiments, the composition or pharmaceutical composition comprising an anti-CD49a antibody comprises a buffer, such as an acetate, histidine, succinate, or phosphate buffer. The buffer can be at a concentration of about 10 mM to about 50 mM, for example, about 20 mM to about 40 mM, such as about 30 mM. For example, the composition can contain a histidine buffer at a concentration of about 10 mM to about 50 mM, for example, about 20 mM to about 40 mM, such as about 30 mM. In one embodiment, the composition contains an acetate buffer at a concentration of about 10 mM to about 50 mM, for example, about 20 mM to about 40 mM, such as about 30 mM.


In some embodiments, the composition or pharmaceutical composition comprises an excipient, such as sorbitol, sodium chloride (NaCl), sucrose, trehalose, or mannitol. The composition can include an excipient at a concentration of about 100 mM to about 300 mM, for example, 110 mM to about 270 mM, about 120 mM to about 230 mM, or about 130 mM to about 210 mM, about 170 mM to about 200 mM, or about 180 mM to about 200 mM. For example, the composition can contain sorbitol at a concentration of about 180 mM to about 300 mM, for example, about 200 mM to about 300 mM, about 200 mM to about 240 mM, about 230 mM to about 270 mM, or about 240 mM to about 260 mM. In another example, the composition can contain NaC1 at a concentration of about 100 mM to about 200 mM, for example, about 110 mM to about 190 mM, about 120 mM to about 180 mM, or about 130 mM to about 170 mM. In another example, the composition can contain sucrose at a concentration of about 200 mM to about 240 mM, about 230 mM to about 270 mM, or about 240 mM to about 260 mM. In another example, the composition can contain trehalose at a concentration of about 200 mM to about 240 mM, about 230 mM to about 270 mM, or about 240 mM to about 260 mM. In yet another example, the composition can contain mannitol at a concentration of about 200 mM to about 240 mM, about 230 mM to about 270 mM, or about 240 mM to about 260 mM.


In some embodiments, the aqueous composition or pharmaceutical composition comprises a surfactant, e.g., a substance that lowers surface tension of a liquid, such as a polysorbate, for example, polysorbate 80 or polysorbate 20. In some embodiments, the concentration of surfactant is at a concentration of about 0.001% to about 0.5%, about 0.001% to about 0.1%, for example, about 0.005% to about 0.05%, such as about 0.01%. Compositions or pharmaceutical compositions of some embodiments herein may be administered orally, parenterally, by inhalation spray, topically, rectally, nasally, buccally, vaginally or via an implanted reservoir. The term “parenteral” is used herein according to its customary and ordinary meaning as would be understood by one of ordinary skill in the art in view of the specification. It includes subcutaneous, intravenous, intramuscular, intra- articular, intra-synovial, intrasternal, intrathecal, intrahepatic, intralesional and intracranial injection or infusion techniques. The compositions may be administered orally, intraperitoneally or intravenously. Sterile injectable forms of the compositions or pharmaceutical compositions of some embodiments herein may be aqueous or oleaginous suspension. These suspensions may be formulated according to techniques known in the art using suitable dispersing or wetting agents and suspending agents. The sterile injectable preparation may also be a sterile injectable solution or suspension in a non- toxic parenterally acceptable diluent or solvent, for example as a solution in 1,3-butanediol. Among the acceptable vehicles and solvents that may be employed are water, Ringer's solution and isotonic sodium chloride solution. In addition, sterile, fixed oils are conventionally employed as a solvent or suspending medium. In some embodiments, the composition or pharmaceutical composition is administered by an oral, intravenous, subcutaneous, intranasal, inhalation, intramuscular, intraocular, intraperitoneal, intratracheal, transdermal, buccal, sublingual, rectal, topical, local injection, or surgical implantation route. In some embodiments, the administration route is oral. In some embodiments, the administration is via injection. In some embodiments, the administration is via local injection. In some embodiments, the administration of the compound is into the cerebrospinal fluid (CSF) of said subject. In some embodiments, the administration of the compound is via intracerebroventricular injection. In some embodiments, the administration is transdermal, e.g., via application of an ointment containing the therapeutic to the head (scalp skin) of said subject.


To aid in delivery of the composition or pharmaceutical composition, any bland fixed oil may be employed including synthetic mono- or di-glycerides. Fatty acids, such as oleic acid and its glyceride derivatives are useful in the preparation of injectables, as are natural pharmaceutically- acceptable oils, such as olive oil or castor oil, especially in their polyoxyethylated versions. These oil solutions or suspensions may also contain a long-chain alcohol diluent or dispersant, such as carboxymethyl cellulose or similar dispersing agents that are commonly used in the formulation of pharmaceutically acceptable dosage forms including emulsions and suspensions. Other commonly used surfactants, such as Tweens, Spans and other emulsifying agents or bioavailability enhancers which are commonly used in the manufacture of pharmaceutically acceptable solid, liquid, or other dosage forms may also be used for the purposes of formulation.


Compositions or pharmaceutical compositions of some embodiments may be orally administered in any orally acceptable dosage form including, but not limited to, capsules, tablets, aqueous suspensions or solutions. In the case of tablets for oral use, carriers commonly used include lactose and corn starch. Lubricating agents, such as magnesium stearate, are also typically added. For oral administration in a capsule form, useful diluents include lactose and dried cornstarch. When aqueous suspensions are required for oral use, the active ingredient is combined with emulsifying and suspending agents. If desired, certain sweetening, flavoring or coloring agents may also be added.


In some embodiments, compositions or pharmaceutically acceptable compositions may be administered in the form of suppositories for rectal administration. These can be prepared by mixing the agent with a suitable non-irritating excipient that is solid at room temperature but liquid at rectal temperature and therefore will melt in the rectum to release the drug. Such materials include cocoa butter, beeswax and polyethylene glycols.


Compositions or pharmaceutical compositions of some embodiments may also be administered topically, especially when the target of treatment includes areas or organs readily accessible by topical application, such as the skin (e.g., scalp skin), or the lower intestinal tract. Suitable topical formulations are readily prepared for each of these areas or organs. Topical application for the lower intestinal tract can be effected in a rectal suppository formulation (see above) or in a suitable enema formulation. Topically-transdermal patches may also be used.


For topical applications, provided compositions or pharmaceutical compositions of some embodiments may be formulated in a suitable ointment containing the active component suspended or dissolved in one or more carriers. Carriers for topical administration of a therapeutic include, but are not limited to, mineral oil, liquid petrolatum, white petrolatum, propylene glycol, polyoxyethylene, polyoxypropylene compound, emulsifying wax and water. Alternatively, provided pharmaceutically acceptable compositions can be formulated in a suitable lotion or cream containing the active components suspended or dissolved in one or more pharmaceutically acceptable carriers. Suitable carriers include, but are not limited to, mineral oil, sorbitan monostearate, polysorbate 60, cetyl esters wax, cetearyl alcohol, 2-octyldodecanol, benzyl alcohol and water.


Provided compositions or pharmaceutical compositions of some embodiments may be formulated as micronized suspensions in isotonic, pH adjusted sterile saline, or, preferably, as solutions in isotonic, pH adjusted sterile saline, either with or without a preservative such as benzylalkonium chloride. Alternatively, the pharmaceutically acceptable compositions may be formulated in an ointment such as petrolatum.


Compositions or pharmaceutical compositions of some embodiments may also be administered by nasal aerosol or inhalation. Such compositions are prepared according to techniques well- known in the art of pharmaceutical formulation and may be prepared as solutions in saline, employing benzyl alcohol or other suitable preservatives, absorption promoters to enhance bioavailability, fluorocarbons, and/or other conventional solubilizing or dispersing agents.


In some embodiments, compositions or pharmaceutical compositions are formulated for oral administration. Such formulations may be administered with or without food. In some embodiments, pharmaceutically acceptable compositions are administered without food. In some embodiments, compositions or pharmaceutical compositions of are administered with food.


The amount of therapeutic that may be combined with the carrier materials to produce a composition or pharmaceutical composition in a single dosage form will vary depending upon the host treated, the particular mode of administration, and other factors known to one of ordinary skill. Preferably, provided compositions should be formulated so that a dosage of between 0.01-100 mg/kg body weight/day of the therapeutic agent can be administered to a patient receiving these compositions.


It should also be understood that a specific dosage and treatment regimen for any particular patient will depend upon a variety of factors, including the activity of the specific therapeutic employed, the age, body weight, general health, sex, diet, time of administration, rate of excretion, drug combination, and the judgment of the treating physician and the severity of the particular disease being treated. The amount of a therapeutic in the composition will also depend upon the particular therapeutic in the composition.


Compositions or pharmaceutical compositions of some embodiment comprising a therapeutic and a pharmaceutically acceptable excipient, diluent, or carrier, are useful for treating a variety of diseases, disorders or conditions. Such diseases, disorders, or conditions include those described herein. In the method or use of some embodiments, the therapeutically effective amount of the compound is about 0.0002 mg/kg to about 2.0 mg/kg. In further embodiments, said therapeutically effective amount of the compound is about 0.00020 mg/kg, about 0.00030 mg/kg, about 0.00045 mg/kg, about 0.00060 mg/kg, about 0.00085 mg/kg, about 0.001 mg/kg, about 0.0015 mg/kg, about 0.002 mg/kg, about 0.0025 mg/kg, about 0.003 mg/kg, about 0.0035 mg/kg, about 0.004 mg/kg, about 0.0045 mg/kg, about 0.0050 mg/kg, about 0.0055 mg/kg, about 0.006 mg/kg, about 0.0065 mg/kg, about 0.007 mg/kg, about 0.0075 mg/kg, about 0.008 mg/kg, about 0.0085 mg/kg, about 0.009 mg/kg, about 0.0095 mg/kg, about 0.01 mg/kg, about 0.015 mg/kg, about 0.02 mg/kg, about 0.025 mg/kg, about 0.03 mg/kg, about 0.035 mg/kg, about 0.040 mg/kg, about 0.045 mg/kg, about 0.05 mg/kg, about 0.055 mg/kg, about 0.06 mg/kg, about 0.065 mg/kg, about 0.07 mg/kg, about 0.075 mg/kg, about 0.08 mg/kg, about 0.085 mg/kg, about 0.09 mg/kg, about 0.095 mg/kg, about 0.1 mg/kg, about 0.15 mg/kg, about 0.2 mg/kg, about 0.25 mg/kg, about 0.3 mg/kg, about 0.35 mg/kg, about 0.4 mg/kg, about 0.45 mg/kg, about 0.5 mg/kg, about 0.55 mg/kg, about 0.6 mg/kg, about 0.65 mg/kg, about 0.7 mg/kg, about 0.75 mg/kg, about 0.8 mg/kg, about 0.85 mg/kg, about 0.9 mg/kg, about 0.95 mg/kg, about 1.0 mg/kg, about 1.1 mg/kg, about 1.2 mg/kg, about 1.3 mg/kg, about 1.4 mg/kg, about 1.5 mg/kg, about 1.6 mg/kg, about 1.7 mg/kg, about 1.8 mg/kg, about 1.9 mg/kg, or about 2.0 mg/kg.


In the method or use of some embodiments, said therapeutically effective amount of the compound is less than about 0.00020 mg/kg, about 0.00030 mg/kg, about 0.00045 mg/kg, about 0.00060 mg/kg, about 0.00085 mg/kg, about 0.001 mg/kg, about 0.0015 mg/kg, about 0.002 mg/kg, about 0.0025 mg/kg, about 0.003 mg/kg, about 0.0035 mg/kg, about 0.004 mg/kg, about 0.0045 mg/kg, about 0.0050 mg/kg, about 0.0055 mg/kg, about 0.006 mg/kg, about 0.0065 mg/kg, about 0.007 mg/kg, about 0.0075 mg/kg, about 0.008 mg/kg, about 0.0085 mg/kg, about 0.009 mg/kg, about 0.0095 mg/kg, about 0.01 mg/kg, about 0.015 mg/kg, about 0.02 mg/kg, about 0.025 mg/kg, about 0.03 mg/kg, about 0.035 mg/kg, about 0.040 mg/kg, about 0.045 mg/kg, about 0.05 mg/kg, about 0.055 mg/kg, about 0.06 mg/kg, about 0.065 mg/kg, about 0.07 mg/kg, about 0.075 mg/kg, about 0.08 mg/kg, about 0.085 mg/kg, about 0.09 mg/kg, about 0.095 mg/kg, about 0.1 mg/kg, about 0.15 mg/kg, about 0.2 mg/kg, about 0.25 mg/kg, about 0.3 mg/kg, about 0.35 mg/kg, about 0.4 mg/kg, about 0.45 mg/kg, about 0.5 mg/kg, about 0.55 mg/kg, about 0.6 mg/kg, about 0.65 mg/kg, about 0.7 mg/kg, about 0.75 mg/kg, about 0.8 mg/kg, about 0.85 mg/kg, about 0.9 mg/kg, about 0.95 mg/kg, about 1.0 mg/kg, about 1.1 mg/kg, about 1.2 mg/kg, about 1.3 mg/kg, about 1.4 mg/kg, about 1.5 mg/kg, about 1.6 mg/kg, about 1.7 mg/kg, about 1.8 mg/kg, about 1.9 mg/kg, or about 2.0 mg/kg.


In the method or use of some embodiments, said therapeutically effective amount of the compound is more than about 0.00020 mg/kg, about 0.00030 mg/kg, about 0.00045 mg/kg, about 0.00060 mg/kg, about 0.00085 mg/kg, about 0.001 mg/kg, about 0.0015 mg/kg, about 0.002 mg/kg, about 0.0025 mg/kg, about 0.003 mg/kg, about 0.0035 mg/kg, about 0.004 mg/kg, about 0.0045 mg/kg, about 0.0050 mg/kg, about 0.0055 mg/kg, about 0.006 mg/kg, about 0.0065 mg/kg, about 0.007 mg/kg, about 0.0075 mg/kg, about 0.008 mg/kg, about 0.0085 mg/kg, about 0.009 mg/kg, about 0.0095 mg/kg, about 0.01 mg/kg, about 0.015 mg/kg, about 0.02 mg/kg, about 0.025 mg/kg, about 0.03 mg/kg, about 0.035 mg/kg, about 0.040 mg/kg, about 0.045 mg/kg, about 0.05 mg/kg, about 0.055 mg/kg, about 0.06 mg/kg, about 0.065 mg/kg, about 0.07 mg/kg, about 0.075 mg/kg, about 0.08 mg/kg, about 0.085 mg/kg, about 0.09 mg/kg, about 0.095 mg/kg, about 0.1 mg/kg, about 0.15 mg/kg, about 0.2 mg/kg, about 0.25 mg/kg, about 0.3 mg/kg, about 0.35 mg/kg, about 0.4 mg/kg, about 0.45 mg/kg, about 0.5 mg/kg, about 0.55 mg/kg, about 0.6 mg/kg, about 0.65 mg/kg, about 0.7 mg/kg, about 0.75 mg/kg, about 0.8 mg/kg, about 0.85 mg/kg, about 0.9 mg/kg, about 0.95 mg/kg, about 1.0 mg/kg, about 1.1 mg/kg, about 1.2 mg/kg, about 1.3 mg/kg, about 1.4 mg/kg, about 1.5 mg/kg, about 1.6 mg/kg, about 1.7 mg/kg, about 1.8 mg/kg, about 1.9 mg/kg, or about 2.0 mg/kg.


Methods, uses, and compositions of some embodiments include an aqueous pharmaceutical composition, such as a stable aqueous pharmaceutical composition, containing an anti-CD49a antibody at a concentration of about 100 mg/mL to about 225mg/mL, for example, about 110 mg/mL, about 120 mg/mL, about 130 mg/mL, about 140 mg/mL, about 150 mg/mL, about 160 mg/mL, about 170 mg/mL, about 180 mg/mL, about 190 mg/mL, about 200 mg/mL, about 205 mg/mL, about 210 mg/mL, about 215 mg/mL, about 220 mg/mL or about 225 mg/mL.


In the method or use of some embodiments, the compound is administered into the cerebrospinal fluid (CSF) of the subject. In the method or use of some embodiments, an ointment comprises said compound and the ointment is administered via application of the ointment to the scalp skin of the subject. In the method or use of some embodiments, an ointment comprises said compound and the ointment is administered via application of the ointment to the head of the subject.


In the method or use of some embodiments , the administration of said compound results in accumulation of immune cells in the brain meninges. In the method or use of some embodiments, the administration of said compound results in elevated T cells and/or natural killer T (NKT) cells in the brain parenchyma.


A compound referred to herein as one that “blocks” integrin signaling may also be referred to herein as a compound that “inhibits” integrin signaling. It will be understood that use of the term “inhibit” or “block” is not intended to necessitate absolute inhibition (or blockage), and as such inhibition or (blockage) as used herein also includes a decrease, reduction or impairment of the relevant target or function. For example, an antibody or antigen binding fragment thereof that binds specifically to CD49a may be referred to herein as a “CD49a-specific” antibody, “anti-CD49a” antibody, CD49a “inhibiting” antibody, and/or CD49a “blocking” antibody. In the method or use of some embodiments, the compound that inhibits integrin signaling comprises, consists essentially of, or consists of Tysabri (natalizumab) or an antigen binding fragment thereof. In the method or use of some embodiments, the compound that inhibits integrin signaling is a compound other than Tysabri (natalizumab). In the method or use some embodiments, the compound that inhibits integrin signaling comprises, consists of, or consists essentially of Tysabri® (natalizumab) formulated for administration into the CSF of the subject or as an ointment to the head of the subject. In the method or use of some embodiments, the compound that inhibits integrin signaling comprises, consists essentially of, or consists of ReoPro® (Abcizimab), Vedolizumab, etrolizumab, anti-av integrin, or Volocixmab, or a combination of two or more of these. In the method or use of some embodiments, the compound that inhibits integrin signaling is ReoPro® (Abcizimab), Vedolizumab, etrolizumab, anti-av integrin, or Volocixmab. In the method or use of some embodiments, the compound that inhibits integrin signaling is a compound other than ReoPro® (Abcizimab), Vedolizumab, etrolizumab, anti-av integrin, or Volocixmab.


In methods, uses, compositions, and pharmaceutical compositions of some embodiments, the anti-CD49a antibody as described herein binds to and inhibits the activity of


CD49a by at least 50% (e.g., 60%, 70%, 80%, 90%, 95% or greater, including any increment therein). The apparent inhibition constant (Kiapp or Ki,app), which provides a measure of inhibitor potency, is related to the concentration of inhibitor required to reduce target (e.g., CD49a) activity and is not dependent on target concentrations. The inhibitory activity of an anti-CD49a antibody described herein can be determined by methods known in the art. In some embodiments, the anti-CD49a binds to CD49a with a dissociation constant KD that is numerically lower (indicating tighter binding than) 10−1, 10−2, 10−3, 10−4, 10−5, 10−6, 10−7, 10−8, 10−9, 10−10, 10−11, or 10−12, including ranges between any two of the listed values. A KD can be determined using methods known in the art, for example surface plasmon resonance on a BIACORE apparatus.


The Ki,aPP value of an antibody may be determined by measuring the inhibitory effect of different concentrations of the antibody on the extent of the reaction (e.g., target activity such as CD49a activity); fitting the change in pseudo-first order rate constant (v) as a function of inhibitor concentration to the modified Morrison equation (Equation 1) yields an estimate of the apparent Ki value. For a competitive inhibitor, the Kiapp can be obtained from the y-intercept extracted from a linear regression analysis of a plot of Ki,app versus substrate concentration.









v
=

A
·






(


[
E
]

-

[
I
]

-

K
i
app


)

+










(


[
E
]

-

[
I
]

-

K
i
app


)

2

+


4


[
E
]


·





K
i
app





2






(

Equation





1

)







Where A is equivalent to vo/E, the initial velocity (vo) of the enzymatic reaction in the absence of inhibitor (I) divided by the total enzyme concentration (E).


In some embodiments, the anti-CD49a antibody described herein has a Kiapp value of 1000, 900, 800, 700, 600, 500, 400, 300, 200, 100, 50, 40, 30, 20, 19, 18, 17, 16, 15, 14, 13, 12, 11, 10, 9, 8, 7, 6, 5 pM or less for the target antigen or antigen epitope, such as an epitope of CD49a. Differences in Kiapp (e.g., for specificity or other comparisons) can be at least 1.5, 2, 3, 4, 5, 10, 15, 20, 37.5, 50, 70, 80, 91, 100, 500, 1000, 10,000 or 105 fold. In some examples, the anti-CD49a antibody inhibits a first antigen (e.g., a first protein in a first conformation or mimic thereof) better relative to a second antigen (e.g., the same first protein in a second conformation or mimic thereof; or a second protein). In some embodiments, any of the anti-CD49a antibodies may be further affinity matured to reduce the Kiapp of the antibody to the target antigen or antigenic epitope thereof.


In methods, uses, compositions, and pharmaceutical compositions of some embodiments, the anti-CD49a antibody suppresses or inhibits integrin signaling triggered by CD49a by at least 50% (e.g., 60%, 70%, 80%, 90%, 95% or greater, including any increment therein). Such inhibitory activity can be determined by conventional methods.


EXAMPLES

In the following Examples, CD49a is identified as a marker that can differentiate two distinct populations of meningeal T cells and that blockade of CD49a, using a blocking antibody in vivo, results in the accumulation of numerous populations of immune cells in the meninges and the parenchymal infiltration of NKT and T cells.


Example 1
Naïve Meninges are Composed of Distinct Populations of CD4 T Cells

Meningeal CD4 T cells have been shown to support cognitive function, in part through the secretion of cytokine IL-48. In order to further analyze the different populations of T cells that populate the naïve meninges, both meninges and diaphragm were isolated and analyzed from adult mice. As described before8, the majority of T cells in the meninges express CD44 and half of the CD44+ cells also express the activation marker CD69 (FIGS. 1a,b). In recent years, a new population of tissue resident memory T cells (or TRM) was described in mucosal tissues after infection, where they ensure surveillance of the tissue against secondary infection11-14. One of the markers that characterize the TRM is the high expression of CD6914. Therefore the CD69− and CD69+ populations of meningeal CD4 T cells were analyzed for the expression of other TRM markers. Indeed the CD69+ population of CD4 T cells of the meninges expresses high levels of CD11a and CD49a, but no CD103 (FIGS. 1c-e), consistent with TRM CD4 T cells identified in the periphery11-14. CD49d, an integrin implicated in the recirculation of T cells in the CNS8 is mostly express by the CD69- CD4 T cells suggesting that the CD69+ T cells are less likely to be recirculating, a common feature of TRM T cells (FIG. 1f).


Example 2
CD49a is Expressed by Multiple Immune Populations in the Meninges and Its Blockade Results in the Transient Accumulation of Immune Cells in the Meninges

CD49a is an integrin alpha subunit, expressed by multiple cell types throughout the body15, notably by immune cells15, and is especially implicated in homing of immune cells in specific tissues. The expression of CD49a by the immune cells that populate the naïve meninges was analyzed. Not only CD4 T cells express CD49a, but also CD8 and NK cells, and to a greater extent NKT cells and monocytes/macrophages (FIGS. 2a,b).


To test the role of CD49a on meningeal immune cells, CD49a interaction and signaling was blocked by using a blocking antibody16. Surprisingly, intracerebroventricular (i.c.v.) injection of a CD49a-blocking antibody [purchased from BD Biosciences, Catalog No. 553961, Clone Ha4/8] at about 5 μg in 5 μLvolume resulted in increased numbers of immune cells previously shown to express high level of CD49a, i.e. T cells, NK cells, and monocytes/macrophages, as soon as 24 h after the antibody injection (FIG. 2c,d). CD49a being an integrin allowing the interaction of immune cells with their local ECM, blockade of CD49a might solely facilitate the extraction of the meningeal immune cells during the tissue isolation. To confirm this, immunohistochemistry was used on meningeal whole mount, 24 h after icy injection of the anti-CD49a antibody. Similar to the FACS analysis, there was an increased density of CD45+ and CD3+ T cells around the sinuses of anti-CD49a-injected mice (FIGS. 2e-g). The accumulation of immune cells in such a small window of time can be due to local proliferation or active recruitment of cells in the meninges. To try and answer this question, pulsed mice were pulsed with BrdU to assess the proliferative state of the cells after CD49a treatment. There was an increase of BrdU+ CD4 T cells in the meninges 24 h after icy injection of CD49a blocking antibody (FIGS. 2h,i), suggesting, at least in part, that CD49a induces proliferation of meningeal immune cells. The duration of CD49a blocking effect was then tested. Mice were injected i.c.v. with the anti-CD49a antibody and sacrificed at different time points post injection. Analysis of the meningeal T cells number revealed an increased number of meningeal T cells up to 3 days after CD49a blockade (FIG. 2j). Interestingly no change in immune cell numbers was observed in the draining (deep cervical) or control (inguinal) lymph nodes, suggesting a local effect of the CD49a blockade antibody.


Example 3
CD49a Blockade Results in the Parenchymal Infiltration of T Cells and NKT Cells, Most Likely Through a Trans-Pial Migration.

I.c.v. injection of the CD49a blockade antibody results in elevated numbers of immune cells in the meningeal compartment. The next example was to show CD49a blockade also resulted in infiltration of immune cells into the brain parenchyma. Brains from CD49a injected mice were then analyzed by both flow cytometry and IHC for the presence of intraparenchymal immune cells. Labeling of brain slices with anti-CD45 antibody revealed the presence of roundly shaped immune cells within the brain parenchyma of CD49a-injected mice as soon as 24 h after the injection (FIG. 3a). Those cells are not trapped into blood or perivascular spaces, as seen with the AQP4 staining and sometimes form clusters within the parenchyma (FIG. 3a). Similar infiltration can be found for up to 4 days after the anti-CD49a injection (FIG. 4b). FACS analysis of the cortex, cerebellum, and spinal cord of CD49a antibody injected mice revealed a spatial specificity of the infiltrate with no detectable immune infiltrate in the spinal cord of CD49a injected mice but a large infiltrate in both the cortex and cerebellum of injected mice (FIGS. 3c-d). The phenotype of the infiltrated immune cells was assessed and found that the majority of them are TCRb+CD4CD8NK1.1+, but also CD11b+Ly6C+, suggesting a population of activated NKT cells. Small populations of CD4+ and CD8+ T cells are also found (FIG. 3e).


Not only is CD49a expressed by immune cells but also by the blood endothelial cells15. To confirm that the parenchymal infiltration of immune cells upon CD49a blockade is not related to a transient opening of the blood brain barrier (BBB), the integrity of the BBB was tested by injecting Evans Blue in the blood vasculature during the 24 h after CD49a treatment. As seen in FIGS. 4a-c, no Evans Blue was detected in the brain or the meninges of IgG or CD49a treated mice, suggesting that the BBB remained intact during the treatment and that the parenchymal infiltration of immune cells is unlikely to come from an opening of the BBB or the BMB (blood meningeal barrier). Immune cells could however infiltrate the parenchyma directly from the meninges, either by crossing the pia or by infiltrating the Virchow-Robin spaces. To confirm this, the KiKGR mice that bear a photoconvertable protein and enables tracking the cell were used. Meninges of KiKGR mice were photoconverted (Green to Red) with a UV laser following i.c.v. injection of CD49a (FIG. 3d). Twenty-four hours after the injection, brains were harvested and the fluorescence of the infiltrated T cells was analyzed by FACS. Indeed, around 25% of the CD45 high cells found in the brain of CD49a injected mice are photoconverted (red) suggesting that those cells were localized in the meninges during the photoconversion (FIG. 3e). These results strongly suggest that the infiltrated immune cells trafficked from the meninges directly into the brain parenchyma.


Overall, blocking the integrin signaling through CD49a induces the proliferation and migration of specific immune cells from the meninges to the brain parenchyma.


Example 4
Repetitive Blockade of CD49a Results in a Decrease in EAE Scoring

Blockade of CD49a interaction and signaling results in the accumulation of T cells and NKT cells in the brain parenchyma of WT mice, likely coming from endogenous meningeal immune cells. The next example shows blocking of CD49a interferes with the development of EAE, the animal model of Multiple Sclerosis, where immune cells, notably T cells, transit through the meninges and also infiltrate the parenchyma. Catheters were inserted into the cisterna magna into mice and were injected every other day with about 5 μg in 5 mL of the CD49a blockade antibodies. At day 6 after beginning of CD49a treatment, EAE was induced by injection of an emulsion of MOG35-55 subcutaneously above the tail. Surprisingly, the repetitive injection of CD49a blocking antibodies decreased the diseases severity compared to IgG injected mice, showing a protective effect of CD49a blockade in the development of EAE (FIG. 5).


Overall those data show that interfering with an integrin, highly expressed by the meningeal immune cells, is sufficient to induce drastic changes in local immune cell populations and favor the migration of cells into the brain parenchyma. CD49a is an example of one integrin that controls immune cell localization and function within brain borders.


Example 5
Administration of an Antibody that Inhibits CD49a Results in a Decrease in EAE Score

Adult C57BI6 female mice were injected i.c.m. with 5 μl of anti-CD49a antibody (or IgG control) at day 8 post EAE induction (EAE was induced by 200 μg of MOG35-55+CFA). Mice were subsequently followed daily for disease progression. The results of this experiment are shown in FIG. 6A. An additional repetition of this experiment is shown in FIG. 6B. CD49a-treated mice show ameliorated progression of symptoms compared to IgG-treated mice.


Example 6
Modulation of a CD49a Blockade

Adult C57B16 mice where sham operated or denervated (SCG excision). One week after surgery, mice were injected with 5 μg of anti-CD49a (or IgG) and tissues were harvested 24h after. FIG. 7A shows quantification of the number of CD45+, T cells, and NK cells in the meninges of sham or denervated IgG and CD49a treated mice. (mean±s.e.m.; n=5 mice/group, ***p<0.001, two-way ANOVA). FIG. 7B shows quantification of geometric mean fluorescence intensity for ICAM1, VCAM1 and CD49a by the meningeal endothelial cells of sham or denervated IgG and CD49a treated mice. (mean±s.e.m.; n=5 mice/group, ***p<0.001, two-way ANOVA). Thus, administering an inhibitor of CD49a signaling to an EAE subject (a model of MS) in accordance with some embodiments herein increased immune cells in the meninges, regardless of whether the subject was denervated (by excision of the SCG).


Adult C57B16 mice had their meningeal lymphatic vessels ablated using Visudyne (control mice were injected with PBS). One week after meningeal lymphatic ablation, mice were injected with 5 μg of anti-CD49a (or IgG) and tissues were harvested 24 h after injection. FIG. 8A shows quantification of the CD45 coverage in the SSS of mice. (mean±s.e.m.; n=4/5 mice/group). FIG. 8B shows quantification of the MHCII coverage in the SSS of mice. (mean±s.e.m.; n=4/5 mice/group). FIG. 8C shows Quantification of the CD3e coverage in the SSS of mice. (mean±s.e.m.; n=4/5 mice/group). FIG. 8D shows Quantification of the density of CD3e cells in the SSS of mice. (mean±s.e.m.; n=4/5 mice/group). Thus, administering an inhibitor of CD49a signaling to an EAE subject (a model of MS) in accordance with some embodiments herein increased immune cells in the SSS, regardless of whether the subject had undergone meningeal lymphatic ablation.


Example 7
CD49a Blockade During EAE Results in Decrease Disease Incidence without Preventing Immune Cells Infiltration

Adult C57B16 mice were immunized with 200 μg of MOG with CFA supplemented with 2mg/m1 of mycobacterium. At D7 post EAE induction, mice were injected i.c.m. with 5 μg of anti-CD49a (or IgG). FIG. 9A shows clinical score of IgG and CD49a treated mice. (mean±s.e.m.; n=36/37 mice/group; **p<0.01; repeated measures two-way ANOVA). FIG. 9B shows incidence of clinical symptoms development of IgG and CD49a treated mice. (mean±s.e.m.; n=36/37 mice/group; ***p<0.001; Log-rank test). FIG. 9C shows clinical scores of symptomatic IgG and CD49a treated mice (mean±s.e.m.; n=24/35 mice/group). Imaging of CD45+ infiltrate in the cerebellum of IgG and CD49a treated mice induced with EAE showed different patterns of CD45 immune cells in the cerebellum of IgG-treated controls and anti-CD49-treated symptomatic and asymptomatic mice, which are described quantitatively in FIGS. 9D and 9E. FIG. 9D shows quantification of the CD45 coverage, CD45+ cells density and density of CD45 cluster in the cerebellum and cortex of IgG and CD49a treated mice induced with EAE. (mean±s.e.m.; n=3/10 mice/group). FIG. 9E shows quantification of the CD45 coverage in the spinal cord of IgG and CD49a treated mice induced with EAE. (mean±s.e.m.; n=4/9 mice/group).


Thus, administering an inhibitor of CD49a signaling to an EAE subject (a model of MS) in accordance with some embodiments herein delayed the onset of EAE, reduced the incidence of EAE, and improved the clinical score of the EAE subject. Accordingly, it is contemplated that administering an inhibitor of CD49a (such as an antibody or antigen binding fragment thereof that binds specifically to CD49a) in accordance with some embodiments herein can delay the onset of, reduce the incidence of, and/or ameliorate symptoms of MS.


Example 8
Validation of the CD49a-KO Mice

Meninges from adult CD49a WT and CD49a KO mice were harvested and analyzed by FACS. FIGS. 10A-G shows representative histogram of CD49a expression by the indicated cell in CD49a WT mice 2 and CD49a KO mice 4. Shown are endothelial cells (FIG. 10A), ILC I (FIG. 10B), NK cells (FIG. 10C), macrophages (FIG. 10D), ILC (FIG. 10E), and NKT cells (FIG. 10F). Endothelial cells, macrophages, ILC, NKT cells, and T cells were lower in the CD49a knockouts meninges compared to wild type controls. Thus, the knockout data further demonstrate that inhibiting CD49a in accordance with some embodiments herein reduces counts of macrophages, NKT cells, and T cell in the meninges.


Example 9
Anti-CD49a Induced Recruitment of Myeloid Cells Alters Neuronal Survival After Injury

Adult C57B16 mice received a unilateral optic nerve crush. At D3 post crush, IgG or anti-CD49a antibodies were injected i.c.m.. Mice were sacrificed at D7 post crush. FIG. 11A shows representative images of retinal ganglion cells (Brna3, red) in the retina of injured eye from IgG or anti-CD49a treated mice. FIG. 11B shows quantification of the number of RGCs in the non injured (left) and injured (right) eyes of IgG and anti-CD49a treated mice. Data are mean+/−s.e.m., n=5 mice per group, ***p<0.001, Student t test. FIG. 11C shows density of RGCs for CD49a WT, CD49a heterozygote (Het) and, CD49a knockout (KO) mice. FIG. 11D shows BMS score in a mouse model of spinal cord injury, in which mice were either administered anti-CD49a antibodies, or IgG control at days 1, 4, and 7.


It is noted that treatment with anti-CD49a did not result in major behavioral abnormalities, as measured in open field, elevated plus maze, three chamber assay, and rotarod experiments (FIGS. 13A-13D).


In summary, treatment with an inhibitor of CD49a (anti-CD49a antibody) in accordance with some embodiments herein inhibited damage to and loss of nervous system cells, as demonstrated by higher numbers of neurons (RGCs) compared to controls, and as demonstrated by superior BMS score for spinal cord injury.


Example 10
Anti-CD49a Induced Recruitment of Myeloid Cells Alters AD Pathology

One month old 5xFAD mice were injected weekly with anti-CD49a antibodies (i.c.m.) or IgG for a month. Representative images of plaques in the hippocampus of IgG and anti-CD49a treated 5xFAD mice are shown in FIG. 12A. Quantification of the number, size and total area of amyloid beta plaques in the hippocampus of IgG and anti-CD49a treated 5xFAD mice was shown in FIGS. 12B and 12C. For FIG. 12B, data are mean+/−s.e.m., n=2 mice per group. For FIG. 12C, data are mean+/−s.e.m., n=3 mice per group. The data in FIG. 12B represent a variation of the data in FIG. 12C. In FIG. 12B, mice that did not present any amyloid beta pathology were excluded from the analysis. Those were beginning of 2 months old mice where the plaque seeding is only starting and therefore some mice had not yet developed the pathology. In summary, treatment with an inhibitor of CD49a (anti-CD49a antibody) in accordance with some embodiments herein increases plaque number, plaque area, and plaque size in the 5xFAD model of AD.


Example 11
Anti-CD49a Results in the Migration of Myeloid Cells Through the Skull Bone Marrow Channels

Mice were injected with anti-CD49a antibodies or IgG control. Representative images of myeloid cells (Ly6C/Ly6G+, red) in the skull bone marrow channels (Osteo sense, white) were shown in FIG. 14A. Quantification of the number of cells per channels in IgG and anti-CD49a treated mice was shown in FIG. 14B. In summary, treatment with an inhibitor of CD49a (anti-CD49a antibody) in accordance with some embodiments herein increases the number of myeloid cells in the skull bone marrow channels.


Example 12
Single Cells of Macrophages and Myeloid Cells from Brain and Meninges of CD49a-Treated Mice

Adult C57B16 male mice were injected into the cisterna magna with 5 μg of IgG or anti-CD49a. Meningeal macrophages (CD11b+F4/80+), brain and meninges monocytes (CD11b+Ly6C+) and neutrophils (CD11b+Ly6G+) were sorted and pooled, and mRNA from the cell was sequenced using the 10x genomic technology. FIG. 15A shows clustering of the sequenced cells (tsne) by cell identity and group of origin (top panel). The bottom panel of FIG. 15A shows violin plots of the markers used to identify the cluster. FIG. 15B shows clustering of the meningeal macrophages, pathway enrichment analysis of the meningeal macrophages in CD49a treated mice, and fold change of chemokines expression in the CD49a treated macrophages. FIGS. 15C-15F show clustering of central nervous system (CNS) monocytes (FIG. 15C) and neutrophils (FIG. 15E) of IgG and anti-CD49a mice. FIGS. 15D and 15F show string analysis of the differentially expressed genes in the monocytes (FIG. 15D) and neutrophils (FIG. 15F) of IgG and anti-CD49a mice. These data demonstrated that anti-CD49a treatment of mice selectively modulated the gene expression profile of myeloid cells, e.g., monocytes, macrophages, or neutrophil in meninges and brain. The differentially expressed genes demonstrated the regulation of chemokine signaling in turn regulating myeloid cell migration into the CNS, as well as giving rise to neuroprotective mechanism(s). Table 1 below summarizes several differentially expressed genes in this study.









TABLE 1







Genes Upregulated in anti-CD49a Treated Mice











Immune Cell
Tissue
Gene
p Value
Average LogFC














Macrophages
Meninges
CCL3
1.81E−08
0.995337169




CCL4
2.72E−08
0.942200279




SPP1
3.81E−08
0.29343668


Monocytes
Meninges
CXCL2
9.07E−21
1.592258245




CCL3
4.41E−23
1.184362281




CCL4
7.72E−15
0.760886636




CXCL16
1.47E−08
0.51565002




SPP1
4.15E−08
0.889201598




TREM2
4.77E−13
0.66783204




TGFBI
8.08E−15
0.730685182


Monocytes
Brain
CXCL2
4.11E−27
0.774361039




CCL3
2.65E−22
0.884708905




CCL4
4.55E−19
0.66355292




CCR2
7.69E−09
0.33137933




ARG1
1.37E−10
0.671877631




TREM2
4.07E−10
0.589774




TGFBI
1.79E−11
0.485576652


Neutrophils
Meninges
CCL3
1.33E−12
1.964905469




CCL4
1.45E−06
1.108528825


Neutrophils
Brain
CXCL2
3.57E−18
0.988546129




CCL3
8.93E−48
1.764351504




CCL4
1.68E−26
0.692442627




CCR2
2.06E−37
1.238451562




SPP1
1.40E−20
0.990124071




ARG1
1.86E−24
0.751502474




TREM2
4.47E−16
0.526029864




TGFBI
1.74E−17
0.456909786









As shown in Table 1 and FIG. 15B, the expression of Cxcl2, Ccl4, Ccl3, Cxcl16, and Ccr2 was upregulated. These cytokines function as chemoattractants for myeloid cells, such as monocytes, neutrophils, and macrophages. As shown in Table 1, the expression of Spp1, Arg1, Trem2, and Tgfbi was upregulated. These proteins are involved in neuroprotection.


The differentially expressed genes identified in this study are listed in the Tables 2-13 in Appendix A.


Example 13
Mass-Cytometry Analysis of the Meninges and Brain After Anti-CD49a Treatment and Vascular Extravasation Blockade

Adult C57B16 male mice were injected into the cisterna magna with 5 μg of IgG or anti-CD49a. FIGS. 16A is a schematic to show the experiment design. Two hours prior to the injection, one group of mice received an intraperitoneal injection of 150 μg of anti-VLA4 and anti-LFA1 to block most of the extravasation capacity of circulating immune cells. Tissues were harvested 24h after and the meninges and brain were analyzed using mass cytometry. FIG. 16B shows representative t-sne plot of the meningeal and brain immune cells (CD45+) in the different group of mice. FIG. 16C shows quantification of the percentage of the different immune cells (% of CD45+) in the meninges and brain of IgG, anti-CD49a and anti-CD49a+anti-VLA4/LFA1 mice. mean+/−s.e.m. *p<0.05; **p<0.01; ***p<0.001 and ****p<0.0001, one-way ANOVA with Tukey's multiple comparisons test.


These results demonstrated that the anti-CD49a treatment selectively recruited myeloid cells to the CNS. These results also demonstrate that myeloid cells can be recruited within the CNS without the requirement of blood vasculature extravasation. It highlights a new route of infiltration of immune cells that might have differential outcome in diseases.


Each of the following references is incorporated by reference in its entirety herein.


1. Louveau, A., Harris, T. H. & Kipnis, J. Revisiting the Mechanisms of CNS Immune Privilege. Trends Immunol. 36,569-577 (2015).


2. Kipnis, J., Gadani, S. & Derecki, N. C. Pro-cognitive properties of T cells. Nat. Rev. Immunol. 12,663-669 (2012).


3. Main, I. & Kipnis, J. Learning and memory ... and the immune system. Learn. Mem. Cold Spring Harb. N 20,601-606 (2013).


4. Schwartz, M., Kipnis, J., Rivest, S. & Prat, A. How do immune cells support and shape the brain in health, disease, and aging? J. Neurosci. Off. J. Soc. Neurosci. 33, 17587-17596 (2013).


5. Ransohoff, R. M. & Engelhardt, B. The anatomical and cellular basis of immune surveillance in the central nervous system. Nat. Rev. Immunol. 12, 623-635 (2012).


6. Andersson, U. & Tracey, K. J. Neural reflexes in inflammation and immunity. J. Exp. Med. 209, 1057-1068 (2012).


7. Brynskikh, A., Warren, T., Zhu, J. & Kipnis, J. Adaptive immunity affects learning behavior in mice. Brain. Behay. Immun. 22, 861-869 (2008).


8. Derecki, N. C. et al. Regulation of learning and memory by meningeal immunity: a key role for IL-4. J. Exp. Med. 207, 1067-1080 (2010).


9. Radjavi, A., Smirnov, I., Derecki, N. & Kipnis, J. Dynamics of the meningeal CD4(+) T-cell repertoire are defined by the cervical lymph nodes and facilitate cognitive task performance in mice. Mol. Psychiatry 19, 531-533 (2014).


10. Louveau, A. et al. Structural and functional features of central nervous system lymphatic vessels. Nature (2015). doi:10.1038/nature14432


11. Carbone, F. R. Tissue-Resident Memory T Cells and Fixed Immune Surveillance in Nonlymphoid Organs. J. Immunol. Baltim. Md 1950 195, 17-22 (2015).


12. Park, C. O. & Kupper, T. S. The emerging role of resident memory T cells in protective immunity and inflammatory disease. Nat. Med. 21, 688-697 (2015).


13. Clark, R. A. Resident memory T cells in human health and disease. Sci. Transl. Med. 7, 269rv1 (2015).


14. Fan, X. & Rudensky, A. Y. Hallmarks of Tissue-Resident Lymphocytes. Cell 164, 1198-1211 (2016).


15. Gardner, H. Integrin α1β1. Adv. Exp. Med. Biol. 819, 21-39 (2014).


16. Chen, Y. et al. CD49a promotes T-cell-mediated hepatitis by driving T helper 1 cytokine and interleukin-17 production. Immunology 141, 388-400 (2014).


INCORPORATION BY REFERENCE

All publications, patents, and patent applications mentioned herein are hereby incorporated by reference in their entirety as if each individual publication, patent or patent application was specifically and individually indicated to be incorporated by reference. In case of conflict, the present application, including any definitions herein, will control.


EQUIVALENTS

Those skilled in the art will recognize, or be able to ascertain using no more than routine experimentation, many equivalents to the specific embodiments of the present invention described herein. Such equivalents are intended to be encompassed by the following claims.


Appendix A: Differentially Expressed Genes in Anti-CD49A Treated Mice
Tables 2-13









TABLE 2







Genes Upregulated in Macrophages in


Meninges of anti-CD49a Treated Mice











Gene
p-val
avg_logFC















Sparc
2.95E−12
1.69853217



Hexb
6.21E−07
1.5228273



Cd9
1.45E−07
1.18946818



Lpl
2.51E−08
1.07463278



Ccl3
1.81E−08
0.99533717



B930036N10Rik
3.51E−15
0.99401264



Ccl4
2.72E−08
0.94220028



Junb
3.77E−08
0.92900107



Fn1
5.67E−09
0.91420686



Sgk1
3.89E−11
0.86967656



Gm10076
3.55E−12
0.76985168



Ly86
9.73E−07
0.76287697



Ldhb
6.67E−10
0.75060559



Gapdh
4.39E−08
0.74390535



mt.Co2
2.42E−10
0.72509221



Fscn1
9.46E−13
0.69135085



Serpine2
1.29E−15
0.68226896



Gpr84
4.28E−16
0.6810003



Syngr1
1.15E−10
0.67577512



mt.Atp6
1.15E−08
0.66056277



Eef2
1.22E−09
0.64440598



Capg
5.97E−10
0.64192741



Phgdh
1.03E−18
0.62828551



mt.Nd3
3.89E−06
0.62808873



mt.Nd1
1.15E−08
0.62754412



Atf3
7.20E−09
0.61793263



mt.Co3
1.16E−10
0.60872986



Dusp1
1.69E−06
0.60692694



mt.Nd2
1.11E−10
0.60565418



mt.Nd4
1.05E−07
0.58977341



Rpsa
5.06E−10
0.58694348



Gm10263
2.04E−06
0.57161343



Gm11808
3.99E−08
0.56981655



Gm10269
2.73E−08
0.56607098



Cst7
1.81E−15
0.56339711



Rps18.ps3
8.84E−07
0.55979526



Mafb
1.49E−07
0.54409028



Gm26917
2.09E−08
0.54071596



Rps26.ps1
4.75E−07
0.54017705



Uba52
1.34E−06
0.52148784



Ecscr
2.24E−14
0.51111523



Plxdc2
1.15E−07
0.50965403



Rpl41
5.89E−08
0.49953714



Rps12.ps3
1.37E−06
0.49723671



Eef1a1
4.76E−11
0.48906095



Rps26
2.14E−09
0.4827306



Rps2
2.45E−07
0.48186137



Rps12
6.05E−08
0.4818404



Gm6133
1.22E−06
0.47766452



Lag3
8.14E−08
0.46687135



Gm2000
3.85E−06
0.46382303



Rpl13.ps3
9.26E−08
0.46136352



Gm8730
9.00E−08
0.44022363



Nfkbiz
5.50E−07
0.42301174



Rpl13a.ps1
3.86E−06
0.41027722



Gins1
2.16E−06
0.40485876



Rps10
2.88E−06
0.40153727



Rplp0
5.50E−08
0.39881993



Rps27a
1.44E−08
0.39442097



Golm1
4.01E−08
0.391201



Wdr89
9.78E−08
0.38585982



Rps7
3.21E−06
0.38479492



Gm6576
4.05E−07
0.38232836



Slc2a5
3.14E−12
0.37212076



Rpl10a
6.58E−07
0.35665635



Rpl24
1.63E−06
0.35242046



Gm10073
9.58E−07
0.35078443



Rpl8
3.55E−07
0.34491338



Rpl31
3.59E−06
0.33175957



Gal3st4
1.33E−13
0.31789298



Cd34
3.14E−12
0.31602571



Rplp2
1.64E−06
0.29400795



Spp1
3.81E−08
0.29343668



Gm7293
6.39E−07
0.28108527



Adgrg1
1.62E−11
0.26915971



Galns
2.33E−06
0.26835041



Smad7
2.73E−08
0.26203018



Naglu
2.05E−06
0.25043821

















TABLE 3







Genes Upregulated in Macrophages in


Brain of anti-CD49a Treated Mice











Gene
p_value
avg_logFC















Hexb
7.58E−07
1.64454476



Olfml3
8.19E−08
1.57543901



Cd9
5.06E−08
1.32620257



Cd81
4.37E−07
1.29179631



Tmem119
4.19E−07
1.22655965



Fcrls
8.65E−10
1.18020405



P2ry12
2.69E−07
1.00981846



Gpr34
2.52E−07
0.99254852



Gm26917
2.30E−13
0.98140947



C1qa
3.05E−08
0.97943974



C1qc
1.01E−06
0.96311477



B930036N10Rik
4.23E−08
0.92983585



Siglech
3.86E−09
0.92488144



C1qb
1.10E−06
0.89940699



Ly86
8.74E−07
0.83663832



Lrrc58
1.20E−07
0.79632837



Calr
1.63E−06
0.73818469



Gpr84
1.78E−11
0.72500672



Ldhb
1.90E−06
0.7085327



Syngr1
2.40E−06
0.69233115



Gm6133
8.50E−09
0.68339879



Gm11808
1.28E−08
0.67541996



Abhd12
2.43E−06
0.66841052



Fscn1
3.42E−09
0.65397023



mt.Nd1
2.69E−07
0.64955257



Gm10020
1.02E−07
0.63591712



Rps18.ps3
1.62E−06
0.63335645



Hmgn1
1.50E−07
0.62856861



Gm10269
4.88E−08
0.62811363



Phgdh
5.39E−10
0.61437971



Serpine2
4.06E−08
0.5899207



mt.Nd2
1.19E−07
0.56124584



Gm8730
1.38E−08
0.54891195



Gm10036
8.93E−07
0.54129244



Cst7
1.39E−07
0.54025665



Gm10073
1.38E−08
0.53965999



Rpl13.ps3
9.96E−08
0.53037794



Plxdc2
6.12E−07
0.52102411



Rpl13a.ps1
1.23E−06
0.51815517



Rpl10.ps3
2.33E−07
0.51726194



Lag3
1.96E−07
0.50386936



Gm6576
2.50E−08
0.46559774



Ppp1r14b
3.25E−06
0.46271074



Rpl4
2.78E−07
0.43396692



Tanc2
2.59E−06
0.32589348



Gal3st4
7.53E−07
0.31789298



Rtn1
1.97E−06
0.30907644



Gm7293
1.24E−06
0.30722243

















TABLE 4







Genes Downregulated in Macrophages in


Meninges of anti-CD49a Treated Mice











Gene
p−val
Avg_logFC















Fcer1g
3.59E−06
−0.2588198



Stab1
3.92E−06
−0.4190385



Tmem176b
2.08E−06
−0.4282242



S100a11
8.88E−07
−0.436066



Mmp8
7.03E−07
−0.4805831



Sepp1
1.24E−07
−0.4868411



Tmem176a
1.31E−06
−0.4960306



Ifitm6
1.68E−07
−0.5212641



Ms4a7
1.28E−06
−0.5238705



Igfbp4
1.68E−06
−0.5545901



Cbr2
3.25E−07
−0.5749881



Slpi
5.68E−09
−0.5967292



Fcgrt
1.13E−07
−0.6003568



Smagp
6.56E−08
−0.6894383



Dab2
7.01E−10
−0.7038323



Ccl8
4.06E−12
−0.7052558



Trf
2.23E−12
−0.7121524



Mrc1
1.08E−10
−0.7220726



Pglyrp1
1.66E−10
−0.743788



Pf4
3.39E−12
−0.7865412



Clec10a
1.05E−07
−0.8197547



Ccl24
2.87E−06
−0.9116746



Apoe
7.68E−15
−0.9171204



Ltf
1.44E−17
−1.0182296



Cd74
5.09E−09
−1.0271156



Cd209g
2.89E−06
−1.0298734



H2.Aa
6.48E−12
−1.142515



H2.Ab1
7.54E−12
−1.1749434



H2.Eb1
8.16E−12
−1.2853002



Cd209f
2.00E−06
−1.3023423



Wfdc21
2.04E−23
−1.3505274



Mgl2
4.60E−17
−1.4346766



Lcn2
5.04E−26
−1.4489891



Ngp
9.07E−31
−1.911379



Retnlg
6.45E−33
−2.0423089



S100a8
1.91E−33
−2.1668801



Camp
2.10E−32
−2.2177266



S100a9
1.74E−33
−2.2237595

















TABLE 5







Genes Downregulated in Macrophages


in Brain of anti-CD49a Treated Mice











Gene
p_val
avg_logFC















Psap
6.87E−07
−0.5286052



Il1b
1.19E−06
−0.6026112



Samhd1
1.68E−06
−0.6080534



H2.Aa
3.20E−08
−0.650763



H2.Ab1
7.18E−08
−0.6529269



Plac8
2.03E−09
−0.7495257



Chil3
2.05E−09
−0.7638213



Crip1
1.55E−09
−0.7922957



Fabp5
1.78E−06
−1.006639



Hbb.bs
1.43E−11
−4.5620426

















TABLE 6







Genes Upregulated in Monocytes in


Meninges of anti-CD49a Treated Mice











Gene
p_val
avg_logFC















Cxcl2
9.07E−21
1.59225825



Ccl3
4.41E−23
1.18436228



Jun
3.73E−31
1.1307181



Ier3
4.10E−22
1.08742218



Fos
1.33E−27
1.0818198



Ccrl2
1.13E−24
1.02618799



Bcl2a1b
8.94E−23
1.02351383



Junb
2.15E−26
0.91695761



Spp1
4.15E−08
0.8892016



Cd14
2.69E−18
0.88658123



Atf3
6.69E−22
0.87236514



Lgmn
7.03E−20
0.86640958



Dusp1
2.75E−20
0.8530505



Hexb
3.43E−16
0.83137339



Nfkbia
2.27E−17
0.81396206



Zfp36
1.18E−24
0.78789442



Ccl4
7.72E−15
0.76088664



Rps18.ps3
3.86E−29
0.7521328



Gm10263
3.79E−31
0.74549134



Tgfbi
8.08E−15
0.73068518



Rpl36.ps3
1.94E−31
0.72040883



Gm10116
5.65E−26
0.71571404



Clec4n
1.39E−08
0.6916935



Ctsd
1.08E−15
0.68830414



Jund
4.57E−17
0.68244339



Gm6133
1.68E−27
0.6813687



C3ar1
5.48E−16
0.67250082



Trem2
4.77E−13
0.66783204



Rps26.ps1
1.74E−23
0.63450575



Apoe
2.78E−09
0.62813261



Eef1a1
3.68E−31
0.62386507



Cstb
3.13E−15
0.60290542



Gm10020
4.11E−25
0.59776291



Gm10260
1.83E−17
0.58859315



Itgb5
4.38E−13
0.58723671



Fcgr2b
3.80E−13
0.58682332



Gm10036
1.68E−26
0.58541323



Cdkn1a
6.81E−14
0.58465673



Rpl13.ps3
4.11E−26
0.58432616



Aif1
6.76E−12
0.56662687



Rpl12
1.44E−20
0.56240499



Il1b
3.66E−10
0.56059929



Rpl3
2.48E−23
0.55053625



Nr4a1
1.17E−11
0.54066788



Fth1
1.62E−18
0.53733343



Rpl9.ps6
3.99E−22
0.53606222



Gm10076
5.17E−26
0.53217595



Rps2
2.97E−21
0.52932219



Csf1r
4.31E−16
0.52855039



Rpl10.ps3
3.21E−21
0.52466072



Bcl2a1d
1.11E−11
0.52391958



Gdi2
7.03E−18
0.52352028



Egr1
1.32E−10
0.52312561



Gm2000
1.49E−24
0.52111064



Socs3
6.05E−08
0.51892829



Cxcl16
1.47E−08
0.51565002



Tlr2
1.57E−09
0.50383948



Gm10269
2.52E−14
0.49286779



Snx5
1.76E−12
0.491965



Hexa
6.15E−14
0.49177822



Slc3a2
1.23E−12
0.49092509



Ier5
5.82E−11
0.48752322



Ldhb
1.20E−07
0.48404015



Rpl23
1.96E−26
0.47944043



Rpl30
1.15E−20
0.47349305



Grn
1.38E−11
0.47104378



Npm1
2.45E−14
0.46571434



Rpl7a.ps5
7.45E−14
0.46505831



Gm8730
4.97E−20
0.46184496



Hnrnpa1
9.52E−12
0.46164942



Rpl29
1.54E−20
0.46160418



Eef2
1.04E−14
0.46007348



Gm9493
9.59E−19
0.45715163



Ctss
3.76E−12
0.45610934



Pim1
1.92E−07
0.45508414



Ubc
8.22E−12
0.45349269



Lat2
3.22E−11
0.45270285



Rpl6l
1.46E−20
0.45250361



Lyz1
4.91E−08
0.44689646



Btg2
6.28E−08
0.44572946



Tgif1
5.03E−14
0.4443003



Rpl13a.ps1
9.36E−11
0.44223906



Gm10073
2.00E−15
0.43831364



Rps26
4.25E−18
0.43782603



Mif
9.43E−09
0.43648174



Rps18
9.44E−22
0.4364405



Rpl5
3.10E−15
0.43596908



Bri3
1.06E−10
0.43505773



AF251705
1.04E−08
0.43486273



Eef1g
3.34E−11
0.43479688



Rpl17
1.15E−22
0.43243098



Lamp1
3.44E−17
0.43006618



Rps7
2.70E−18
0.4246649



Rgs10
1.99E−12
0.42414568



Nfkbiz
4.27E−11
0.4228873



Rgs1
3.13E−07
0.41929294



Tmem86a
5.10E−09
0.41672086



Rps8
3.06E−21
0.41486908



Rpl15
1.71E−19
0.41425509



Acp5
2.16E−09
0.41324354



Gm6576
1.32E−10
0.41297692



Pold4
4.30E−09
0.41124473



Rps27rt
4.82E−20
0.40896444



Bcl2a1a
6.77E−09
0.40794881



Tpt1
1.67E−23
0.40753015



Npc2
1.16E−11
0.40353206



Sirpb1c
1.15E−07
0.40283153



Gm17541
5.11E−10
0.40281009



Mafb
2.24E−07
0.39996572



Ppp1r15a
7.99E−13
0.39862351



Rps4x
2.98E−19
0.39541898



Tctex1d2
9.35E−08
0.39440673



Rpl32
2.06E−21
0.39378982



Rnase4
3.32E−06
0.39268533



Gnb2l1
2.69E−14
0.39182243



Rpl14
1.04E−15
0.39082249



Dpep2
4.19E−10
0.39018648



Pabpc1
1.21E−11
0.38980326



Zeb2
8.34E−07
0.38584435



Gusb
4.58E−08
0.38512577



Rpl36a
3.14E−13
0.3844358



Lgals1
4.38E−08
0.38404466



Atp5g2
7.30E−10
0.38393988



Ecm1
9.21E−09
0.38263944



Rps3a1
3.31E−19
0.38233571



Rpl6
8.89E−20
0.3818314



Gm26917
4.41E−11
0.38062605



Ifnar2
7.51E−09
0.38055011



Rplp0
2.56E−17
0.37810841



Capg
2.11E−06
0.37442111



Rps2.ps6
8.85E−10
0.37367338



Rps10
5.18E−19
0.37352636



Abhd12
1.89E−09
0.37290472



Ctsz
1.12E−10
0.3725525



Lilr4b
3.50E−08
0.37229361



Rpl9
6.55E−20
0.37177858



Rps6
2.19E−17
0.36968059



Gm11808
4.98E−18
0.3686181



Pid1
1.44E−08
0.36571006



Fam213b
6.68E−09
0.36404883



Olfml3
3.67E−11
0.36099023



Rpl10a
6.23E−14
0.35729615



Ms4a6d
1.30E−06
0.35307693



Wdr89
2.45E−17
0.35174725



Nme2
7.52E−09
0.35119695



Gadd45b
9.13E−07
0.35020483



Rpl8
4.74E−16
0.34947419



Skil
2.20E−07
0.34881342



Rpl35
1.75E−15
0.3479576



Rpl13
3.23E−16
0.3468875



Ftl1
1.07E−13
0.34559395



Rpl7a
4.54E−14
0.34521554



Ctsa
2.97E−09
0.34478194



Pnrc1
6.99E−07
0.3441851



Gapdh
3.25E−10
0.34391631



Rps20
6.08E−14
0.3432715



Rpl27.ps3
3.78E−16
0.34275645



Rpl18
1.72E−13
0.33970856



Rps17
2.46E−13
0.33811056



Slc25a3
7.56E−09
0.33626489



Rpl24
2.78E−17
0.3341386



Rps3
2.98E−16
0.3336198



Anxa4
9.29E−08
0.33206645



Rpl26
1.99E−18
0.33168208



Gm10709
3.21E−09
0.33102067



Cd86
3.81E−08
0.32819907



Rpl11
7.99E−17
0.32230094



Sirpb1b
2.99E−06
0.32175365



Coro1b
5.50E−08
0.32013786



Rpl31
5.71E−13
0.31955013



Ptafr
3.37E−06
0.31896716



Hexim1
1.28E−08
0.31760664



Rpl10
4.27E−12
0.31607151



Renbp
1.36E−07
0.31574238



Gm5093
1.84E−08
0.31467301



Rpl37
1.43E−17
0.31311495



Eif3m
7.94E−07
0.3126113



Uba52
3.06E−15
0.31255569



Rpl4
1.37E−10
0.3120875



Rpl36
9.23E−15
0.30931069



Fam3c
1.17E−08
0.30908997



Rplp1
1.68E−12
0.30842047



Rpl18a
1.55E−15
0.30831851



Unc93b1
1.98E−08
0.30810276



Gm7293
1.31E−07
0.30500944



Trib1
2.32E−08
0.30447713



Rps13
2.40E−14
0.30364043



P2rx4
1.05E−06
0.30290505



Sirpb1a
1.60E−06
0.30285609



Tnf
1.48E−09
0.3024245



Rps5
7.92E−14
0.30160415



Eif3h
1.32E−08
0.29990535



Dnase2a
2.06E−08
0.29930975



Rpl27a
5.49E−14
0.29696805



Rpl22
7.46E−11
0.29647979



Gm9843
3.15E−15
0.29554278



Eef1b2
1.76E−07
0.29313712



Eid1
5.82E−07
0.2930419



Rps23
7.16E−14
0.29288449



Svbp
3.31E−06
0.29262014



Pkib
6.15E−07
0.29213481



Efhd2
1.18E−06
0.29185241



Gm6377
7.01E−09
0.28706344



Rpl41
8.12E−14
0.28697375



Rps15
1.53E−12
0.2863559



Adap2os
2.63E−06
0.28551041



Axl
3.53E−06
0.28528186



Matk
1.34E−08
0.28134571



Rpl21
6.40E−15
0.28116597



Rpl13a
7.16E−14
0.28105739



Gm17056
1.20E−06
0.28067132



Hebp1
3.46E−07
0.28006399



Tmem119
1.13E−07
0.27935084



Pebp1
7.07E−07
0.27461933



Rpl34
7.92E−14
0.27370395



Rps12
1.76E−09
0.27337944



Parp1
8.16E−07
0.27232466



Rps19
4.54E−14
0.26865824



Rps25
5.01E−11
0.26680405



Rpl19
2.40E−12
0.26614002



Rpl23a.ps3
2.77E−09
0.26538006



Rps15a
1.42E−11
0.26318066



Rps16
1.44E−12
0.26264588



P2ry12
5.30E−07
0.26073223



Fcgr3
7.43E−07
0.26072837



Naa20
1.07E−06
0.26031527



Plgrkt
3.59E−06
0.25684742



Gde1
8.98E−07
0.2556075



Gm8973
1.11E−06
0.25459625



Rpl23a
2.05E−10
0.25355601



Itga6
1.06E−07
0.25195368



Rps9
1.93E−09
0.2507595



Rpl39
4.96E−10
0.25036861



Nr4a2
3.23E−07
0.25033848



Tnfaip3
4.86E−08
0.25002145

















TABLE 7







Genes Upregulated in Monocytes in


Brain of anti-CD49a Treated Mice











Gene
p_val
avg_logFC















Lgmn
1.79E−22
0.94635474



Ccl3
2.65E−22
0.88470891



Hbb.bs
1.71E−31
0.79953777



Apoe
2.06E−15
0.7898567



Cxcl2
4.11E−27
0.77436104



H2.Aa
1.09E−08
0.75277355



Il1b
9.60E−29
0.7250685



Fcgr2b
3.36E−21
0.72217285



Cd74
4.26E−09
0.72014483



H2.Ab1
9.02E−07
0.68204028



Arg1
1.37E−10
0.67187763



Ccl4
4.55E−19
0.66355292



H2.DMb1
2.54E−11
0.65141758



Aif1
3.11E−17
0.63880011



C3ar1
1.00E−14
0.63539176



Cstb
1.56E−16
0.63109919



Ctsd
1.72E−13
0.62552478



Bcl2a1b
7.84E−11
0.61901346



Trem2
4.07E−10
0.589774



H2.DMa
8.57E−15
0.58583716



Ccrl2
1.82E−18
0.57369817



AF251705
1.89E−15
0.56638501



Ecm1
5.92E−13
0.53964741



Fth1
1.49E−21
0.52523305



Ctss
3.64E−18
0.51990111



Sepp1
8.05E−07
0.50602612



Rgs10
6.67E−15
0.49102385



Jun
1.18E−10
0.49076918



Tgfbi
1.79E−11
0.48557665



Snx5
1.41E−12
0.47576167



Clec4n
3.88E−06
0.46257497



Grn
5.61E−14
0.45127534



Npc2
4.28E−16
0.45110731



Bri3
5.43E−12
0.43718394



Rpl3
1.52E−18
0.42861879



Hexa
4.74E−13
0.42713199



Tmem176b
8.74E−09
0.4248092



Nfkbia
5.65E−08
0.41453465



Ftl1
4.57E−17
0.41228431



Ms4a6d
3.25E−09
0.40908981



Gdi2
2.98E−11
0.40085416



Fcgr1
6.13E−09
0.39971253



Csf1r
3.77E−11
0.3954489



Tmem86a
8.79E−08
0.3924534



Dhrs3
1.05E−07
0.38975683



Adgre1
1.71E−08
0.38774431



Tubb2a
5.93E−08
0.38140761



Cd14
2.51E−07
0.37910603



Sirpb1c
1.12E−07
0.37639865



Fos
1.92E−09
0.37502954



Ctsc
4.92E−10
0.37296656



Ctsa
4.33E−11
0.37261756



Pold4
2.94E−08
0.37083642



Lamp1
4.88E−14
0.36377671



Ly86
2.35E−07
0.36278813



Fcgr3
5.33E−09
0.35499684



Ier3
3.36E−07
0.3543161



Unc93b1
2.66E−11
0.35291165



Pkib
1.62E−08
0.35083758



Ctsz
2.06E−10
0.34876465



Xpot
1.15E−09
0.34851092



Atp2b1
1.01E−06
0.34094438



Tctex1d2
1.14E−07
0.33432392



Ccr2
7.69E−09
0.33137933



P2rx4
4.97E−07
0.32868404



Ifnar2
1.78E−08
0.32804369



Coro1b
1.17E−07
0.32774076



Lgals1
3.53E−06
0.32773597



Junb
6.15E−07
0.32258707



Fam213b
6.31E−08
0.31105349



Tgif1
2.14E−07
0.31042174



Hba.a2
3.13E−11
0.30755306



Rsrp1
1.52E−07
0.30524161



P2ry6
5.82E−07
0.30017037



Btg1
1.81E−08
0.30000777



Hba.a1
8.99E−12
0.29692736



Gusb
3.75E−06
0.29590749



Sdcbp
2.46E−06
0.29207431



Atp5g2
3.40E−08
0.2919616



Abhd12
2.43E−06
0.29153728



Zfos1
3.53E−06
0.2817017



Fam105a
3.64E−07
0.28144716



Itm2c
9.30E−07
0.27961282



Snap23
6.78E−07
0.27837648



Eef1g
2.10E−07
0.27738145



Ubc
3.65E−07
0.27664954



Eef1a1
1.17E−11
0.27315025



Ctsh
1.04E−07
0.27255533



Hbb.bt
9.56E−12
0.27135894



Egr1
2.34E−06
0.27113381



Rps2
4.09E−08
0.27001391



Slc25a3
1.17E−06
0.2676465



Pebp1
1.87E−07
0.26450558



Plgrkt
2.33E−06
0.26397809



Apoa1bp
1.12E−06
0.25892109



Ppp1r15a
6.86E−07
0.25568953



Rpl41
1.15E−13
0.25539481



Gm5150
1.36E−06
0.25368698



Parp1
6.56E−07
0.25219642

















TABLE 8







Genes Downregulated in Monocytes in


Meninges of anti-CD49a Treated Mice











Gene
p_val
avg_logFC















Ccl7
1.48E−08
−0.2516399



Sec61g
3.66E−06
−0.2663989



BC035044
2.10E−07
−0.2738574



Retnla
6.23E−09
−0.2794928



Nhsl2
2.48E−06
−0.2877171



H3f3a
7.96E−10
−0.2907085



Ccna2
6.02E−09
−0.2982257



Spn
8.61E−08
−0.3080083



S1pr4
2.24E−09
−0.3081526



Tspo
6.85E−07
−0.3110725



Myl6
4.87E−09
−0.3205517



Lockd
1.33E−08
−0.3207781



Ndufb7
6.54E−07
−0.321696



Racgap1
3.23E−07
−0.3255227



Cdca3
1.03E−07
−0.3262457



Nfe2
2.11E−07
−0.3272263



Rrm2
6.45E−07
−0.3321582



Me2
2.40E−07
−0.3385882



Gda
3.08E−07
−0.345601



H2.Aa
8.68E−07
−0.3475977



Cbfa2t3
1.19E−06
−0.3616784



Bin2
3.34E−06
−0.366002



Sec11c
3.65E−06
−0.375721



Ccnb2
5.95E−08
−0.3776796



Gpx1
5.12E−10
−0.3830604



Mki67
6.92E−08
−0.3866818



H2.Ab1
4.59E−08
−0.3952973



Ckap4
3.41E−07
−0.4103882



Fam107b
3.15E−06
−0.4139293



Serpinb10
1.36E−10
−0.417487



Unc119
1.54E−08
−0.4218404



Pi16
1.06E−07
−0.4248127



Mrpl33
4.50E−07
−0.4309734



Mgl2
9.13E−11
−0.4367282



G0s2
1.85E−06
−0.4477917



Ifitm2
1.67E−08
−0.4481207



S100a6
3.68E−09
−0.4620605



Coro1a
1.91E−14
−0.4629945



Trem3
1.29E−06
−0.4741985



Glipr2
3.20E−10
−0.4861011



Flna
1.50E−09
−0.4961726



Cdc42ep3
4.97E−13
−0.4964199



Fam111a
9.74E−09
−0.5009945



Taldo1
1.06E−10
−0.5096429



Wfdc17
2.79E−07
−0.512349



Itgal
1.11E−09
−0.5263466



Cebpe
7.73E−07
−0.5286079



C1galt1c1
1.27E−08
−0.5350003



Top2a
1.98E−09
−0.5469942



H2.Eb1
9.28E−11
−0.5497042



Arhgdib
9.09E−11
−0.5500561



Lbr
1.37E−09
−0.5552334



Cdkn2d
1.13E−10
−0.5564479



Lsp1
1.05E−11
−0.565686



Ltb4r1
1.06E−09
−0.5802268



Lrg1
2.02E−08
−0.5867745



Tmcc1
5.30E−08
−0.5891387



Sell
1.98E−08
−0.5963218



Birc5
4.68E−11
−0.5966319



Rasgrp2
1.26E−14
−0.597488



Cnn2
3.84E−10
−0.5975979



Tppp3
7.14E−08
−0.6232919



Anxa2
1.25E−12
−0.6303441



Ccl8
2.87E−24
−0.6343291



Itgb7
5.65E−12
−0.6351765



Serpinb1a
2.87E−12
−0.6392389



Cytip
6.70E−12
−0.656651



H2afx
2.82E−07
−0.6709242



Ccnd3
4.10E−14
−0.6786465



Mmp9
1.21E−07
−0.6801023



Ly6c2
2.60E−08
−0.6897489



Cd177
1.08E−12
−0.6897568



Ccl17
1.38E−07
−0.6945208



Msrb1
2.61E−10
−0.696232



Napsa
3.62E−14
−0.7177677



Tmsb10
7.05E−12
−0.7203773



X2810417H13Rik
3.40E−07
−0.7285495



Ly6g
8.21E−14
−0.7323743



Prtn3
1.17E−10
−0.740452



Pf4
1.00E−20
−0.7427163



Ube2c
6.02E−09
−0.8063575



Prr13
6.24E−18
−0.8317058



Klf2
4.60E−14
−0.8330745



S100a11
2.63E−16
−0.8445053



Anxa1
6.11E−13
−0.9042466



Stmn1
3.29E−07
−0.9389285



Mgst1
1.33E−13
−0.9445076



Ear2
8.43E−15
−0.9618132



Mmp8
1.14E−18
−1.0503527



Plac8
1.44E−13
−1.1161366



Gsr
2.70E−19
−1.1489925



Ifitm6
3.57E−18
−1.2006513



Slpi
9.96E−21
−1.2396313



Hp
1.91E−20
−1.3308912



Hmgb2
7.91E−15
−1.3998485



Pglyrp1
6.44E−28
−1.7401983



Ltf
6.12E−35
−1.9053366



Wfdc21
5.02E−37
−2.2122398



Lcn2
7.29E−45
−2.6487626



Retnlg
1.41E−43
−2.9460372



S100a9
1.25E−43
−3.2436403



S100a8
7.11E−43
−3.2463785



Ngp
2.90E−48
−3.6346084



Camp
6.31E−49
−3.9257027

















TABLE 9







Genes Downregulated in Monocytes in


Brain of anti-CD49a Treated Mice











Gene
p_val
avg_logFC















Ccna2
5.85E−10
−0.2553609



Knstrn
3.98E−10
−0.2592968



Ywhaz
3.17E−06
−0.2619571



Lockd
1.31E−06
−0.2651745



X6430548M08Rik
1.95E−07
−0.2717079



Fam101b
4.85E−07
−0.2744322



Gm26917
3.06E−08
−0.2848814



Racgap1
7.90E−09
−0.2855324



Ccl12
2.16E−06
−0.289565



Cdca3
3.85E−09
−0.2908443



S1pr4
6.24E−12
−0.2915418



Me2
4.89E−07
−0.2927714



AY036118
1.19E−06
−0.323587



Mki67
1.24E−09
−0.3292276



Mrpl33
3.37E−06
−0.3363041



Tmpo
8.81E−07
−0.3365711



Fcrls
3.44E−12
−0.3392043



Rnase6
1.23E−06
−0.3400341



Ccnb2
1.33E−10
−0.3510472



Cdc42ep3
2.02E−08
−0.3527338



Gda
2.62E−07
−0.354308



Ckap4
1.31E−06
−0.3544928



Adpgk
2.64E−08
−0.3546949



Nfe2
1.03E−12
−0.364706



Unc119
2.86E−08
−0.3696868



Gm10320
9.52E−10
−0.3773832



Serpinb10
4.54E−17
−0.3836176



Cdk1
3.06E−06
−0.3961652



Itgal
2.17E−08
−0.3999043



Ltb4r1
2.98E−06
−0.4016906



Coro1a
6.76E−15
−0.4126199



AI839979
3.98E−07
−0.4128051



Pi16
6.69E−10
−0.4177522



Lsp1
4.53E−10
−0.4185581



Cd81
2.77E−13
−0.4213482



Taldo1
4.29E−10
−0.4285385



Napsa
1.06E−08
−0.4293459



Glipr2
6.81E−10
−0.4303753



S100a6
1.79E−09
−0.4395265



Fam107b
5.19E−09
−0.4418406



Tagln2
3.16E−06
−0.4449391



Tuba4a
2.69E−06
−0.4481479



Arhgdib
2.99E−08
−0.4496288



Rasgrp2
1.45E−11
−0.451841



Lbr
2.59E−08
−0.4596399



Trem3
5.13E−10
−0.4726988



Top2a
1.93E−10
−0.4735547



Cdkn2d
1.54E−09
−0.4800311



Cytip
1.71E−08
−0.4813451



Plp2
5.99E−07
−0.4959285



Birc5
9.41E−10
−0.4967589



Flna
1.34E−13
−0.5111655



Ccl17
3.41E−07
−0.5218452



Cebpe
2.71E−09
−0.5225471



Mcemp1
2.81E−11
−0.5291514



Lrg1
3.50E−12
−0.5395922



Msrb1
1.44E−08
−0.5420216



Itgb7
1.73E−11
−0.543036



Serpinb1a
4.58E−09
−0.5492289



H2afx
1.00E−07
−0.5656593



Ccnd3
1.66E−14
−0.5744146



Anxa2
9.66E−14
−0.5755038



Prr13
3.95E−14
−0.6128314



X2810417H13Rik
5.99E−09
−0.6205342



Tmsb10
1.14E−12
−0.6376529



Cd177
1.41E−16
−0.6436889



Gm5483
3.15E−10
−0.6828154



Ear2
2.02E−16
−0.6901505



Ccl8
4.81E−27
−0.6908091



Sell
3.84E−15
−0.6922516



Ube2c
1.37E−10
−0.7344389



Mgst1
2.56E−12
−0.7432898



Ly6g
8.53E−27
−0.7434769



Mmp9
1.83E−10
−0.7518618



S100a11
1.70E−17
−0.7670145



Stmn1
3.60E−09
−0.7845974



Gm9844
3.14E−16
−0.8063219



Gsr
2.83E−16
−0.8509971



Anxa1
3.46E−15
−0.8529099



Pf4
9.57E−31
−0.9221419



Mmp8
2.51E−25
−1.027464



Hmgb2
2.14E−10
−1.0669291



Ifitm6
7.40E−22
−1.0920321



Hp
1.20E−18
−1.1157102



Slpi
1.65E−24
−1.2235875



Pglyrp1
1.11E−36
−1.6237952



Ltf
3.92E−71
−2.0031277



Wfdc21
2.13E−53
−2.2034873



Lcn2
2.93E−70
−2.6817382



Retnlg
1.98E−56
−3.2086941



S100a8
5.54E−55
−3.3668782



S100a9
1.72E−55
−3.3727258



Ngp
7.60E−86
−3.7483047



Camp
2.38E−87
−4.0465663

















TABLE 10







Genes Upregulated in Neutrophils in


Meninges of anti-CD49a Treated Mice











Genes
p_val
avg_logFC















Ccl3
1.33E−12
1.96490547



Gm12840
6.69E−07
1.51730346



Ccrl2
9.03E−16
1.46732097



Egr1
1.04E−12
1.23299514



Jun
2.58E−10
1.21968689



Ppp1r15a
5.07E−11
1.1762097



Nr4a1
4.14E−10
1.12578013



Ccl4
1.45E−06
1.10852882



Gngt2
3.14E−09
1.07938539



Ptgs2
8.99E−07
1.06695034



Csf3r
3.11E−10
1.02924582



Bcl2a1b
5.78E−09
0.94860512



Gadd45b
1.34E−06
0.94328437



Tsc22d3
2.76E−06
0.91365274



Btg2
3.09E−09
0.8904592



Fbxo31
3.83E−07
0.88187837



Gm10263
2.96E−06
0.87993745



Cstb
1.60E−08
0.80939337



Gm10076
4.25E−11
0.80086816



Rps27rt
3.90E−15
0.80058492



Zfp36
2.90E−11
0.79379032



Polr2l
6.78E−07
0.79310469



Gm10116
2.79E−14
0.76747653



Gm2a
1.84E−08
0.76121142



Tctex1d2
8.16E−07
0.75581618



Pmaip1
1.87E−06
0.74915327



Junb
3.32E−10
0.7420738



Gm6133
3.66E−07
0.73307625



Sirpb1c
1.63E−08
0.7287267



Wdr89
2.22E−09
0.72014444



Rbm3
2.60E−08
0.71413584



Nfkbia
1.25E−06
0.71101113



Il1b
2.34E−08
0.6918114



Fosb
1.06E−06
0.68759572



Dusp1
6.83E−08
0.68186473



Fos
3.33E−10
0.67662503



Rps8
6.72E−10
0.66116482



Rpl8
1.03E−09
0.62992155



Fxyd5
4.35E−09
0.62445023



Rpl17
4.89E−12
0.61891277



D8Ertd738e
1.31E−07
0.61797208



Bcl2a1a
3.29E−06
0.60710188



Gm10073
3.44E−06
0.60071835



Rps5
4.34E−08
0.57685126



Gm9843
1.52E−15
0.56770548



Rplp2
1.40E−08
0.56693404



Sirpb1b
1.09E−06
0.56000329



Tpt1
1.73E−08
0.5390388



Rps27
1.73E−14
0.53515601



Csf1
1.39E−07
0.52951881



Rps10
4.35E−07
0.52100802



Rpl18
1.05E−07
0.51769893



Rpl41
6.38E−10
0.51263584



Ctsd
5.73E−09
0.50632209



Rpl39
2.15E−06
0.46652164



Rps9
1.19E−11
0.46207842



Fau
1.75E−12
0.44625037



Rpl37a
8.54E−07
0.43186832



Rps16
1.66E−06
0.41412743



Fth1
1.67E−08
0.39908358



Dusp2
1.11E−06
0.39842844



Rps14
5.03E−07
0.38848674



FIG. 4
2.59E−06
0.37530425



Ftl1
7.80E−09
0.31699408



S100a5
1.84E−07
0.26042222

















TABLE 11







Genes Upregulated in Neutrophils in


Brain of anti-CD49a Treated Mice











Genes
p_val
avg_logFC















Ccrl2
2.17E−51
1.89807822



Ccl3
8.93E−48
1.7643515



Ccr2
2.06E−37
1.23845156



Fn1
3.69E−32
1.08969992



Rps28
4.32E−38
1.08594683



Rpl35
1.04E−33
1.05102004



Ppp1r15a
1.94E−38
1.02265971



Spp1
1.40E−20
0.99012407



Cxcl2
3.57E−18
0.98854613



Rpl3
3.02E−29
0.95035886



Ifi30
3.86E−31
0.94367272



Ctss
1.96E−36
0.9263954



Ms4a6c
1.93E−27
0.92525539



Rpl13
1.93E−36
0.92155671



Gm2000
2.79E−29
0.91412572



Rpl36
1.46E−34
0.90601989



Npc2
1.81E−37
0.90543998



Hbb.bs
1.21E−56
0.90237148



Rpl10
2.29E−32
0.90114946



Rpl6l
7.67E−30
0.89723592



Gadd45b
6.14E−28
0.89678617



Rpl10.ps3
4.39E−25
0.88550478



Rps2
3.29E−29
0.87992109



Nfkbia
2.61E−20
0.87797277



Rps18
4.31E−33
0.87172705



Rps26
4.63E−42
0.8637836



Fy86
6.30E−26
0.86188537



Rps18.ps3
4.28E−27
0.85840474



Rpl36a
5.60E−30
0.85396596



Nr4a1
1.09E−27
0.85097084



Bcl2a1b
5.78E−24
0.84031691



Gngt2
4.93E−24
0.83522978



Eef1a1
1.36E−39
0.82752842



Rpl6
4.69E−34
0.82517046



Rpl38
8.22E−38
0.82419269



Gm8730
1.05E−23
0.81940997



Rps8
1.66E−34
0.81578129



Gm9493
1.64E−24
0.81281843



Rps3a1
8.70E−44
0.81280181



Rpl37a
5.35E−43
0.80382163



Rps26.ps1
1.11E−27
0.80372161



Rplp0
4.69E−29
0.79806811



Cd74
1.85E−08
0.79648633



Rpl41
1.01E−43
0.7947976



Rpl36.ps3
6.66E−26
0.79400423



Ms4a4c
5.71E−21
0.78675019



Jun
1.90E−28
0.78582962



Mrpl52
2.30E−27
0.78193958



Rpl32
2.60E−35
0.77638992



Rpl39
6.26E−34
0.77568239



Dusp2
2.06E−20
0.77321474



Egr1
1.22E−21
0.76291146



Gm10263
1.87E−25
0.76214145



Rpl10a
2.65E−24
0.75716816



Ptma
2.24E−28
0.75663442



Rps5
1.05E−36
0.75538041



Rps19
8.07E−35
0.75515619



Arg1
1.86E−24
0.75150247



Npm1
6.65E−25
0.7473045



Ptgs2
5.72E−22
0.74607829



Ccl9
2.08E−22
0.7454576



Rps6
1.13E−33
0.74527209



Tpt1
6.47E−44
0.7411226



Rpl15
4.98E−21
0.73624045



Plac8
8.58E−15
0.73196268



AF251705
5.35E−26
0.72770461



Psap
8.41E−27
0.72341856



S100a4
7.49E−20
0.7232476



Rps7
1.18E−29
0.71643142



Zeb2
1.51E−23
0.71287178



Lgmn
8.55E−18
0.71276283



H2.DMa
2.50E−19
0.71180882



Rpl18
4.29E−33
0.71102361



Fcgr2b
9.17E−23
0.70124419



Rpl14
1.59E−27
0.69979376



Cstb
3.17E−26
0.69929037



Fam105a
7.52E−29
0.69777628



Sirpb1c
2.79E−29
0.69610617



Rpl13.ps3
2.13E−20
0.69454833



Ccl4
1.68E−26
0.69244263



Gm10076
8.36E−29
0.69078255



Rps15a
2.74E−26
0.68877511



Rps4x
2.31E−21
0.68728663



Wdr89
4.00E−30
0.67483321



Rpl22
2.46E−26
0.67158127



Rpsa
2.42E−23
0.67115186



Rpl26
5.74E−31
0.66920805



Lgals1
4.11E−19
0.66735198



Rplp2
7.05E−33
0.66287802



Zfos1
1.06E−26
0.66010764



Mif
4.26E−21
0.65069447



Rpl12
4.51E−20
0.64639865



Rpl8
4.77E−31
0.64505772



Mpeg1
1.01E−26
0.64502661



Rpl11
7.44E−28
0.64252281



H2.Aa
4.27E−10
0.63597788



Rpsl6
1.06E−39
0.63384376



Gm10036
8.46E−20
0.62902927



Rpl27
2.50E−28
0.6260205



Gm8186
2.84E−23
0.62370029



Gm10073
1.34E−21
0.62369916



Rpl24
4.86E−29
0.62179978



H2.DMb1
1.63E−17
0.62155345



Rpl13a
1.48E−37
0.61634273



Ms4a6b
1.28E−16
0.61488446



Rpl27a
1.35E−28
0.60666399



Sepw1
4.21E−17
0.60439946



Eef2
6.98E−20
0.59764163



Rpl36al
2.11E−23
0.59261293



Rpl23
1.51E−28
0.59246412



Mnda
2.27E−22
0.59128519



Rps23
2.26E−30
0.58868737



Rpl23a.ps3
6.57E−20
0.58828868



Rpl35a
1.64E−33
0.58826933



Eif3f
4.71E−21
0.585731



Gm2a
2.57E−21
0.58429497



Naca
3.80E−25
0.58346814



Rpl28
5.50E−25
0.58282448



mt.Nd1
2.06E−19
0.58251063



Atf3
5.88E−28
0.57996495



Gnb2l1
1.45E−21
0.57903078



Rps14
2.16E−32
0.57712655



Il1b
1.06E−09
0.57562682



Rpl18a
1.08E−33
0.57469482



Rpl5
1.78E−20
0.57265016



Clec4a3
4.17E−18
0.57087678



Rps17
4.69E−24
0.56850249



Snrpf
1.99E−19
0.56795291



Rps29
1.30E−29
0.56529953



Rpl27.ps3
1.46E−18
0.56424624



Ly6e
1.47E−19
0.55698497



Rpl30
5.53E−24
0.5523436



Rps3
3.74E−26
0.54944177



Rbm3
1.13E−20
0.54760898



Zfp36
6.89E−09
0.54492636



Rpl34
3.82E−26
0.54200003



Atp5g2
7.97E−18
0.54097147



Rps15
6.05E−24
0.53969603



Rps20
1.02E−19
0.53760995



Ifi204
5.70E−17
0.53734287



Gm10020
9.80E−16
0.53607152



Rps12.ps3
3.37E−16
0.5352634



Rpl7a
9.69E−18
0.53332554



Rps27rt
1.33E−28
0.52676178



Hspa8
7.70E−19
0.52638452



Snrpe
2.00E−18
0.52615373



Trem2
4.47E−16
0.52602986



Rps11
5.15E−23
0.52530681



Slc25a5
5.88E−19
0.52339524



Rpl29
5.51E−16
0.51838473



Rpl9.ps6
3.49E−19
0.51834878



Ms4a6d
3.18E−16
0.5164798



Ahnak
2.03E−19
0.51532816



Rpl9
3.87E−27
0.51339216



Rps27
4.17E−37
0.51193796



Lamp1
3.30E−19
0.51121099



Snx5
1.67E−16
0.51060085



Snrpg
1.81E−15
0.509988



Ly6i
8.05E−19
0.5090844



Rps24
1.82E−21
0.50875849



Ly6a
1.72E−14
0.50556657



Rps10
1.13E−23
0.50523422



Fabp5
2.74E−09
0.50453746



Eef1b2
6.61E−18
0.50385127



Ctsc
3.68E−13
0.49644715



Rplp1
6.22E−23
0.49514809



Rpl17
5.77E−28
0.49512814



Rpl19
6.26E−23
0.49291462



Cd14
5.20E−11
0.49192917



Mafb
7.76E−21
0.48826102



Ndufb5
5.52E−15
0.48581832



Unc93b1
3.73E−17
0.48528149



Ier5
7.74E−13
0.48441408



Rpl21
2.09E−21
0.4788783



H2.Ab1
2.14E−07
0.4784771



Crip1
3.47E−12
0.47840723



Rgs10
7.13E−15
0.47764148



S100a10
1.45E−13
0.47697262



Cxcl10
1.34E−11
0.4740744



Uba52
2.85E−16
0.47214738



Atox1
2.12E−20
0.47155515



Eif3e
6.56E−17
0.47056287



Rpl37
1.21E−30
0.47033308



Rpl23a
1.20E−19
0.46966524



Ifngr1
6.59E−14
0.46858856



Btf3
2.36E−18
0.46609376



Rps13
3.58E−25
0.46594685



Pcbp2
1.65E−15
0.46566539



Nme2
4.04E−19
0.464722



mt.Atp6
4.33E−16
0.46264825



Akr1a1
3.21E−14
0.46078126



Tgfb1
2.39E−14
0.46040141



Nfkbid
4.94E−13
0.45707073



Tgfbi
1.74E−17
0.45690979



Plekho1
6.00E−18
0.45656961



mt.Nd3
2.14E−14
0.45156535



Ifi27l2a
2.42E−15
0.44785084



Epsti1
7.71E−19
0.44767908



Eif4a1
5.01E−14
0.44552668



Bax
1.06E−18
0.44254673



Nupr1
4.33E−18
0.44166366



mt.Nd2
6.24E−13
0.44023555



Rassf4
1.96E−21
0.44015389



Ptafr
9.61E−13
0.43996599



Eif3i
5.59E−18
0.43983316



Ctsl
4.61E−16
0.43953562



Lrp1
3.20E−21
0.43725718



Hnrnpa1
6.26E−20
0.43723866



Gltscr2
6.29E−17
0.43702337



Mndal
6.38E−17
0.43665



Prdx2
1.49E−14
0.43604707



M6pr
6.97E−16
0.43500306



Hspe1
7.68E−13
0.43471358



Bcl2a1d
1.59E−14
0.43470395



Gm10269
3.98E−19
0.43350477



Erp29
1.07E−13
0.43307381



Rps21
3.33E−17
0.4304929



Pold4
5.66E−15
0.43024677



Pmaip1
3.14E−14
0.42990139



AI413582
3.67E−18
0.42822063



Gm11808
1.23E−13
0.42818777



Lair1
2.47E−18
0.42439025



Ier3
2.14E−10
0.42206107



Ctsa
1.81E−15
0.42099692



X2700060E02Rik
1.36E−17
0.42098569



Tnfaip3
2.93E−16
0.42065938



Dbi
8.51E−13
0.4176635



Tnfaip2
6.10E−11
0.41616843



Bri3
9.29E−12
0.41505823



Nsa2
1.20E−17
0.41385193



Bcl2a1a
4.68E−17
0.41114196



Bola2
2.91E−16
0.40979191



Lat2
5.26E−17
0.40900246



Rpl7
4.95E−15
0.40551303



Skil
4.62E−19
0.40541572



Lpl
7.44E−14
0.40499437



Ctsh
1.78E−11
0.40484743



Rps27l
6.34E−12
0.40420794



Serbp1
6.11E−14
0.40401301



Irf8
1.55E−16
0.40391491



mt.Nd4
2.57E−11
0.40192899



Naaa
5.59E−14
0.40118319



Pld4
1.47E−11
0.39701619



Rpl4
7.72E−12
0.39675635



Rps9
5.33E−30
0.39492821



Per1
4.84E−19
0.39323747



Zfp36l2
1.42E−08
0.39315085



Abi3
1.47E−15
0.39146944



Ndufc2
9.54E−12
0.38955655



Saa3
2.49E−11
0.38727196



Sf3b5
5.12E−13
0.38680828



Polr2e
3.17E−18
0.3867312



Ctsz
1.34E−11
0.38660295



Ssr4
3.23E−11
0.38587063



Polr2l
1.04E−15
0.38473846



Eef1d
5.74E−14
0.38354789



Rpl31
2.39E−14
0.37659561



Cd48
2.11E−12
0.37598964



Rps12
2.19E−13
0.37594793



Prep
8.57E−14
0.37511703



Aif1
5.25E−08
0.37335088



Eif3m
1.86E−16
0.37278339



Eif3k
1.55E−12
0.37234283



Irf2bp2
4.51E−15
0.37214214



Pkib
5.57E−21
0.36882789



AI607873
1.18E−16
0.36813025



Cox7a2l
9.96E−12
0.36698544



Mrpl30
2.61E−14
0.36620827



Atp2b1
1.74E−14
0.36606774



Tgif1
8.19E−18
0.36169098



Clec4n
2.64E−08
0.36117355



Slc25a3
5.55E−12
0.36049284



BC005537
4.99E−09
0.356889



Rpl7a.ps5
1.84E−12
0.35589902



Atp5c1
2.38E−11
0.35577277



Tmem176b
7.65E−07
0.3557493



Tomm20
2.30E−13
0.35570189



Nap1l1
8.70E−15
0.35540505



Ifi47
3.21E−15
0.35200683



Snrpb2
1.34E−12
0.35187709



Hbb.bt
5.61E−21
0.35136283



Gstp1
2.82E−18
0.35078439



Pnpla7
1.09E−13
0.34730775



Tubb5
5.39E−12
0.34631782



Pyhin1
3.90E−16
0.34620587



Clec4a1
4.52E−10
0.34264589



Ccnl1
1.19E−10
0.34135188



Hmgb1
9.66E−11
0.34081413



Ybx1
6.09E−11
0.3385658



mt.Co2
2.87E−10
0.338129



Eif3h
6.61E−10
0.33766722



Nme1
3.36E−12
0.33722605



St13
1.94E−13
0.33721847



Rps25
2.03E−16
0.33658237



Cmc1
2.14E−19
0.33584869



H1f0
8.75E−17
0.33316241



Anxa5
4.09E−10
0.33131992



Grn
1.23E−07
0.33043509



Rexo2
2.83E−15
0.33004147



Pgls
2.07E−13
0.32713514



Map3k1
2.03E−17
0.32660047



C3ar1
3.11E−11
0.32338722



Fcgr1
1.88E−09
0.32245126



Slc25a4
2.05E−16
0.32243686



Fosb
4.63E−14
0.32238838



Gm10260
2.13E−16
0.32141071



B3gnt8
1.67E−18
0.3207686



Echs1
2.54E−14
0.32042313



Bcl2l11
8.34E−16
0.31961154



Comt
3.15E−12
0.31959647



Cirbp
2.37E−14
0.31912946



F10
1.17E−18
0.31799603



Gm6133
2.56E−09
0.31758034



Asah1
3.89E−09
0.31685274



Polr1d
4.75E−09
0.31683627



Gsto1
1.58E−15
0.31631127



Tmem86a
1.73E−13
0.31493838



Qk
4.01E−13
0.31483676



Lgals3bp
7.82E−14
0.31376458



Fundc2
1.69E−15
0.31062057



Ppia
5.12E−10
0.3096689



Ccdc109b
5.56E−16
0.30956964



Fam174a
1.70E−11
0.30895763



Dek
2.23E−15
0.30803259



Rnf213
2.24E−15
0.30798455



Eef1g
1.51E−08
0.3078968



Sdc3
1.21E−14
0.30745524



Snrpd2
1.12E−11
0.30711669



Abcg1
6.05E−13
0.30590019



Irf7
5.17E−11
0.30574375



mt.Cytb
1.17E−09
0.30508207



mt.Co3
1.27E−12
0.30382104



Tsc22d3
2.45E−08
0.30362208



Cd302
1.00E−12
0.30277622



Gm4955
1.52E−12
0.30167697



Fau
5.35E−18
0.30077024



Tgm2
1.11E−11
0.30066465



Marcks
4.47E−08
0.30004833



AW112010
2.60E−06
0.29890841



Dexr
2.37E−16
0.29865505



Ecm1
3.44E−19
0.29819367



Klf10
7.89E−16
0.29809202



Gnpda1
3.11E−16
0.29595047



Mrpl54
2.81E−13
0.29566892



Gltp
7.05E−12
0.29535778



Arf4
3.03E−14
0.29482811



Slc43a2
3.24E−13
0.29444497



Lpxn
3.19E−18
0.29317957



Clta
1.56E−09
0.2927906



Cisd2
8.30E−13
0.2927779



Cdkn1a
8.88E−11
0.29192915



Arl4c
8.93E−13
0.29022512



Bcas2
7.33E−11
0.28940197



Ivns1abp
1.53E−13
0.28918336



Llph
1.12E−12
0.28860161



mt.Nd5
2.12E−10
0.28848098



Mrpl17
1.24E−11
0.28675437



Ms4a8a
6.42E−19
0.2863833



Sec61g
5.38E−09
0.28633092



Pddc1
6.76E−13
0.28611079



Amdhd2
1.08E−15
0.28607292



Hexb
8.98E−08
0.28492037



Sirpb1a
6.29E−16
0.28481663



Bst2
6.06E−07
0.2839835



Cct4
8.37E−13
0.28335034



Fam26f
1.97E−14
0.28316064



Dpysl2
2.63E−13
0.28229326



Ncl
2.28E−12
0.28181495



Zc3h12a
4.82E−09
0.28131843



Gdi2
4.89E−08
0.28117994



Tnf
4.91E−08
0.28027146



Atp5d
7.89E−08
0.27956578



Flcn
1.51E−16
0.27876183



Stra13
9.34E−12
0.2777716



Mrpl4
2.44E−16
0.27773583



Isg15
1.93E−08
0.27636886



Mef2a
2.86E−13
0.27544105



Mtdh
1.55E−09
0.27530715



Csf1
1.63E−13
0.27456959



X2010107E04Rik
1.06E−07
0.27330647



Cd93
2.62E−13
0.27263216



Dnajc19
2.82E−11
0.27222693



Itga4
3.58E−14
0.27154



Polr2g
1.25E−10
0.27126551



B2m
4.02E−13
0.2712007



Elk3
1.63E−11
0.27066616



Yy1
4.28E−12
0.27006136



Psma7
1.08E−07
0.26973296



Cuta
5.88E−12
0.26897942



Itm2c
2.39E−11
0.26878589



Hba.a2
4.02E−23
0.26852962



Evl
1.57E−12
0.2684975



Igfbp6
2.34E−09
0.26789718



Dhrs3
8.19E−11
0.26775037



Plk3
1.63E−11
0.2672776



Ndufa6
3.84E−08
0.26583434



X1600014C10Rik
4.70E−11
0.26512287



Trmt112
2.17E−10
0.2640664



Eif3j1
2.93E−11
0.26392096



Gns
4.38E−13
0.26292239



Pnp
1.01E−08
0.26250561



Fam20c
6.41E−16
0.26236639



Tifab
8.90E−14
0.26099479



Emg1
7.31E−12
0.26042088



Phf5a
1.19E−12
0.26024163



Rbm7
1.54E−14
0.25999311



Anxa4
2.02E−17
0.25971888



Gnas
6.51E−07
0.2595508



Ifi203
8.16E−10
0.25893923



Ppt2
6.96E−15
0.25717786



Mif4gd
3.54E−14
0.25653028



Pnrc2
7.67E−14
0.25613315



Tmem256
5.25E−07
0.25594164



Mrps24
1.70E−08
0.25549719



Npm3
6.78E−12
0.25464737



Trappc2l
1.36E−10
0.25431791



Atp5a1
2.25E−08
0.25398807



Hint1
4.95E−07
0.25344951



Psmb1
2.41E−09
0.25341123



Csf1r
1.63E−06
0.2533516



Srsf3
8.04E−07
0.25275942



Psmg4
1.61E−12
0.25233136



Eif3a
4.36E−12
0.25180541



Dnajc15
5.18E−12
0.25102069



Xist
1.55E−06
0.25086749

















TABLE 12







Genes Downregulated in Neutrophils in


Meninges of anti-CD49a Treated Mice











Gene
p_val
avg_logFC















Itm2b
1.84E−06
−0.3467123



Myl6
2.36E−08
−0.5112851



Shfm1
3.42E−08
−0.5471315



Lgals3
3.23E−07
−0.5711241



Lyz2
2.52E−11
−0.571991



Tkt
1.95E−07
−0.5757586



Actr3
6.32E−08
−0.6240156



Prdx5
1.01E−08
−0.6269279



Hp
1.82E−08
−0.649573



Apoe
2.30E−16
−0.6799873



mt.Co1
2.20E−11
−0.6989009



Trem3
3.63E−06
−0.7029397



Gda
1.49E−07
−0.703407



Capza1
5.22E−07
−0.7113132



Hk3
1.34E−06
−0.7242723



Sri
4.66E−07
−0.7245648



Ccnd3
9.67E−09
−0.7245672



Aldh2
8.05E−07
−0.7317524



Fpr2
3.05E−10
−0.7548722



Atxn10
6.31E−07
−0.7733475



Ly6c2
2.42E−09
−0.7896751



Tmcc1
7.28E−09
−0.7995845



Hmgn2
8.13E−07
−0.8084779



Arhgdib
1.20E−11
−0.8132104



Mrgpra2b
1.05E−06
−0.8261332



Ceacam10
7.02E−07
−0.8317525



Serpinb1a
1.17E−06
−0.8592986



Ltb4r1
7.63E−08
−0.8611326



Mgst2
7.34E−07
−0.8758051



Plaur
8.61E−07
−0.8791689



Sepp1
1.01E−10
−0.887687



Cd74
1.72E−13
−0.8997973



Prr13
1.32E−12
−0.901672



Cdkn2d
1.47E−08
−0.9065293



H2.Aa
2.43E−15
−0.9093922



Lmo4
3.37E−08
−0.9095078



Timp2
3.78E−09
−0.9347264



Mgl2
5.87E−07
−0.9463588



C1qb
2.22E−10
−0.9472063



Mrc1
1.77E−06
−0.9778767



Pglyrp1
7.17E−13
−0.9808341



Itgb2l
2.83E−07
−0.9842519



Dstn
1.04E−08
−1.0029117



H2.Ab1
2.17E−16
−1.0139576



Mgst1
1.20E−12
−1.0198348



Glrx
9.33E−11
−1.0440623



Cd177
3.17E−09
−1.055608



Adpgk
1.57E−09
−1.0690492



H2.Eb1
1.84E−11
−1.0714054



Cybb
5.34E−09
−1.087698



C1qa
9.69E−14
−1.0902225



Chil1
1.02E−10
−1.1041069



Lrg1
1.05E−13
−1.1538101



Ccl12
4.33E−09
−1.1695488



S100a8
1.80E−16
−1.1948886



S100a9
1.28E−16
−1.2264832



Anxa1
3.14E−15
−1.3592756



C1qc
4.36E−16
−1.3622972



Retnlg
4.27E−19
−1.4527536



Ccl8
1.85E−16
−1.5104426



Ifitm6
1.04E−16
−1.5185012



Wfdc21
4.61E−20
−1.7152159



Mmp8
1.92E−19
−1.7179759



Ly6g
1.14E−17
−1.7455808



Pf4
1.02E−19
−1.7913594



Lcn2
1.87E−23
−1.9541429



Ltf
2.31E−17
−2.1032831



Ngp
1.42E−25
−2.5248239



Camp
1.28E−27
−2.9299336

















TABLE 13







Genes Downregulated in Neutrophils


in Brain of anti-CD49a Treated Mice











Gene
p_val
avg_logFC















Ccno
2.65E−06
−0.2738811



Tyrobp
1.14E−12
−0.2765349



1−Sep
2.25E−06
−0.2851003



Gpx1
2.66E−06
−0.2886348



Olfml2b
3.10E−08
−0.2912001



Cd55
2.59E−06
−0.2941151



Gm1604a
6.95E−07
−0.313213



Tpm3
3.43E−06
−0.3294335



Ccl17
1.96E−06
−0.3295013



Eif1
7.93E−12
−0.3313038



Ubl5
3.55E−08
−0.3383655



Actr3
1.49E−06
−0.3453485



Tst
4.65E−08
−0.3472778



Gca
1.89E−06
−0.3509441



Sh3bgrl3
8.75E−15
−0.355514



Fcer1g
2.94E−22
−0.3642714



Cotl1
1.38E−10
−0.3644488



Oaz1
1.08E−11
−0.3658103



Serf2
9.53E−14
−0.3685677



Atp6v0e
1.36E−06
−0.3694543



Alox5ap
8.63E−13
−0.3744867



C5ar1
1.18E−07
−0.3760388



H3f3a
5.27E−15
−0.3809382



Lgals3
1.32E−07
−0.394717



Cd53
2.10E−09
−0.4008551



Tmem40
2.10E−06
−0.402431



Cep19
1.26E−06
−0.4050563



Megf9
8.52E−07
−0.4098612



Hdc
1.83E−09
−0.4174241



Atp6v1g1
1.40E−13
−0.4174588



X9830107B12Rik
8.93E−09
−0.4235807



Ifitm2
7.98E−07
−0.4239375



Ppp1r42
1.90E−10
−0.4292823



Cox17
4.14E−08
−0.4367966



Tspo
1.07E−08
−0.4421788



Cdc42
3.55E−14
−0.4476084



Cd52
4.36E−16
−0.4596892



Gnb2
8.65E−11
−0.4639089



Vsir
1.36E−09
−0.4641482



Arpc2
3.85E−15
−0.4650985



Eno1
4.30E−08
−0.4674324



Golim4
3.53E−06
−0.4684107



Spi1
1.04E−11
−0.4684381



Ankrd22
2.65E−06
−0.4753663



Cyba
3.22E−18
−0.491161



Arpc3
2.86E−18
−0.4936799



X2310001H17Rik
7.24E−07
−0.4953506



Atp6v1e1
2.91E−06
−0.4955607



Ppp1r18
3.58E−06
−0.4959528



X4933408B17Rik
1.13E−09
−0.5017587



Pet100
2.08E−07
−0.5055566



Gnai2
1.32E−16
−0.5073132



Kira17
4.60E−08
−0.5187677



Bmx
1.29E−06
−0.5229477



Ly6c2
1.41E−10
−0.5230278



Lrrk2
1.25E−08
−0.5397331



Fis1
6.09E−09
−0.5404619



Gpsm3
3.09E−11
−0.5433357



Crispld2
3.96E−08
−0.5487685



Ncf4
4.23E−07
−0.5515707



Tmsb4x
2.31E−39
−0.5521121



Cfl1
1.50E−24
−0.5555309



Mrgpra2a
7.53E−11
−0.5559796



Gpr27
1.18E−10
−0.5625554



Gm26917
1.98E−06
−0.5651023



Prok2
1.27E−06
−0.5655199



Myl12b
9.47E−12
−0.5660797



Cyfip2
6.16E−10
−0.5745562



Tinagl1
2.52E−10
−0.5778632



Capza1
9.25E−07
−0.580598



Osm
9.06E−07
−0.5809865



Nadk
2.05E−06
−0.5810601



Zyx
1.47E−08
−0.5830795



Lilrb4a
1.34E−10
−0.5836649



Slpr4
5.41E−13
−0.585887



Ccdc180
1.79E−06
−0.5876489



Cd63
9.77E−10
−0.5902601



Fam65b
2.49E−06
−0.5909863



Pabpc1l
1.79E−11
−0.5919356



Iqgap1
1.48E−09
−0.5945848



Slc27a4
8.59E−08
−0.5953537



Rab3d
2.44E−07
−0.6000699



Lsp1
3.05E−17
−0.602176



Msrb1
1.78E−18
−0.6036536



Stk39
7.05E−13
−0.6061084



Pilra
1.36E−13
−0.6082663



Scrg1
2.79E−13
−0.6111041



Actg1
3.00E−30
−0.6234706



Gapdh
8.90E−17
−0.6266962



Adam8
7.41E−07
−0.6281612



Shfm1
1.42E−25
−0.6292129



Mxd1
3.59E−11
−0.6378963



Syne1
5.28E−13
−0.639095



St3gal5
6.59E−07
−0.6391293



Ccl8
9.15E−23
−0.6400125



C1qc
4.66E−14
−0.6416385



Scp2
1.48E−07
−0.6439638



X1700047M11Rik
5.62E−13
−0.6467846



Rdh12
2.20E−10
−0.6469699



Coro1a
1.53E−25
−0.6549073



Cd209f
4.86E−08
−0.6563716



Xdh
3.64E−07
−0.6586771



Mpc2
1.57E−07
−0.663464



Cd81
3.02E−09
−0.6635554



Hk3
6.01E−09
−0.6673921



C1qa
1.24E−16
−0.673834



Hsd11b1
2.88E−12
−0.6794722



B230208H11Rik
8.8OE−13 
−0.6801641



Ldha
3.30E−09
−0.6825935



Unc119
3.23E−07
−0.6843834



Mgl2
3.10E−07
−0.6927752



Aldoa
1.10E−20
−0.6938609



Lbr
1.89E−07
−0.7001391



Arpc5
1.25E−22
−0.703563



Gm10282
8.47E−09
−0.7088609



Fcrls
3.20E−10
−0.7127892



Rnf144a
2.02E−11
−0.7137474



X1110008F13Rik
3.24E−15
−0.7204102



Tecr
7.95E−07
−0.7286357



Lilr4b
1.52E−12
−0.7291511



Flot1
4.29E−08
−0.7349339



Dhrs7
4.87E−15
−0.7407431



Lcp1
7.17E−25
−0.7426167



Sri
2.03E−12
−0.7472529



Flna
3.46E−11
−0.749235



Limd2
4.49E−16
−0.7500331



Alox5
6.26E−11
−0.7534523



Itgb2
3.55E−19
−0.7558419



Ncf1
8.29E−15
−0.7563511



Triobp
5.02E−12
−0.7681859



Cd24a
9.44E−18
−0.7746612



Lasp1
3.23E−08
−0.7754124



Plaur
6.37E−10
−0.7865317



Msra
4.63E−11
−0.789573



Sell
3.29E−11
−0.7922012



Ccl12
1.66E−10
−0.7937523



Rasgrp2
1.42E−07
−0.797943



Gmfg
9.80E−29
−0.7983013



AA467197
1.21E−06
−0.803601



Mettl9
6.79E−10
−0.8082325



Pfn1
2.37E−40
−0.8088777



Myl6
1.84E−36
−0.8093836



Pram1
2.44E−13
−0.817607



Pkm
1.50E−26
−0.8230565



Gpi1
2.85E−17
−0.8230798



Il1f9
6.38E−21
−0.8298498



Mrpl33
6.01E−29
−0.8463777



Degs1
3.14E−11
−0.8490231



Grina
2.41E−16
−0.855234



Timp2
1.38E−14
−0.8614557



Aldh2
1.39E−14
−0.8676256



Ostf1
8.27E−30
−0.8684213



Cdkn2d
2.18E−13
−0.8701764



Atxn10
1.81E−13
−0.8780172



Mapk13
1.89E−15
−0.8782322



Ccnd3
3.21E−14
−0.8788046



Vasp
1.40E−23
−0.8806605



Ltb4r1
9.18E−12
−0.8808808



Pgd
1.35E−21
−0.8886128



Nfe2
9.45E−15
−0.893519



Pnkp
6.84E−14
−0.9014237



Lmo4
1.27E−13
−0.9023597



Actb
2.33E−19
−0.9088269



Txn1
4.64E−31
−0.9114281



Taldo1
2.37E−30
−0.9120236



Actn1
1.36E−14
−0.9140751



Max
8.49E−10
−0.9158238



Cxcr2
1.72E−15
−0.9170293



Cebpe
3.52E−12
−0.9262342



Mrgpra2b
6.29E−21
−0.9409811



Plp2
1.36E−20
−0.9441579



Anxa11
3.97E−15
−0.9472993



Fpr1
2.57E−14
−0.9591607



Tkt
1.69E−21
−0.9794108



Pygl
7.55E−20
−0.9827099



Dgat1
1.6OE−16 
−0.9882231



Prdx5
1.75E−35
−1.0140241



Asprv1
1.07E−07
−1.0142876



Mgst2
3.35E−21
−1.0148273



Rac2
1.94E−33
−1.017885



Fam101b
3.34E−18
−1.0202052



Hmgb2
1.59E−26
−1.025282



Gsr
 6.88E−3O
−1.0263222



Glipr2
1.26E−17
−1.02669



Padi4
5.43E−19
−1.0347502



Pi16
1.82E−17
−1.0442386



Slc2a3
4.95E−19
−1.0504712



Trem3
9.73E−20
−1.0512713



Itgb2l
1.01E−20
−1.0517592



Serpinb1a
5.62E−18
−1.0547502



Hcst
1.01E−24
−1.0662812



Ceacam10
1.78E−22
−1.0666733



Tmcc1
1.38E−26
−1.0702161



Chil1
9.97E−25
−1.0707168



R3hdm4
5.37E−25
−1.078889



Ckap4
8.17E−17
−1.086595



Anxa2
1.05E−34
−1.120058



Gda
2.29E−25
−1.1374218



Arhgdib
3.07E−41
−1.1383099



Cd9
4.96E−28
−1.1783892



Dstn
5.86E−17
−1.1928566



Glrx
3.47E−25
−1.1985145



Gadd45a
5.01E−25
−1.2027462



Cnn2
1.16E−28
−1.2264219



Pf4
3.35E−33
−1.2679102



Hmgn2
4.28E−29
−1.3057563



Fpr2
3.87E−30
−1.3205548



Adpgk
3.21E−27
−1.3938158



S100a6
1.43E−44
−1.400967



Stfa2l1
2.03E−06
−1.4506312



Slpi
7.64E−38
−1.4514155



Mcemp1
1.27E−38
−1.453741



Mgst1
1.19E−33
−1.4878819



Prr13
1.20E−44
−1.4946458



Hp
1.05E−49
−1.5484988



S100a11
4.35E−48
−1.5629079



Mmp9
5.37E−49
−1.6808594



Cd177
1.61E−31
−1.7539383



Lrg1
1.10E−46
−1.8441386



Anxa1
1.94E−48
−2.0784718



Ly6g
2.18E−50
−2.1245872



Pglyrp1
1.05E−58
−2.3238468



Retnlg
4.63E−60
−2.4944767



Mmp8
5.05E−61
−2.5122499



S100a8
1.11E−62
−2.5474235



Ifitm6
1.14E−51
−2.5843405



S100a9
9.37E−64
−2.6660066



Wfdc21
1.27E−62
−2.7474632



Lcn2
1.72E−65
−3.182155



Ltf
1.39E−53
−3.8500598



Ngp
5.56E−74
−4.977874



Camp
4.69E−76
−5.2082909









Claims
  • 1. A method of reducing neuron death, comprising contacting a neural tissue with an effective amount of a compound that inhibits integrin signaling, wherein the compound decreases CD49a function.
  • 2. The method of claim 1, wherein the compound reduces neuron death by at least about 10%.
  • 3.-4. (canceled)
  • 5. The method of claim 1, wherein the compound is an antibody or antigen binding fragment thereof that specifically binds to CD49a.
  • 6.-7. (canceled)
  • 8. The method of claim 1, wherein the neural tissue is in a subject, further comprising administering the compound to the subject.
  • 9.-10. (canceled)
  • 11. The method of claim 8, wherein the method reduces neuron death in the subject, and wherein the subject has a central nervous system (CNS) injury.
  • 12. (canceled)
  • 13. The method of claim 8, wherein the method is used in a treatment of multiple sclerosis (MS) disease or autism spectrum disorder (ASD).
  • 14. A method of selectively increasing the number of myeloid cells in a neural tissue, comprising contacting the neural tissue with effective amount of a compound that inhibits integrin signaling, wherein the compound decreases CD49a function.
  • 15.-24. (canceled)
  • 25. The method of claim 14, wherein the method has neuroprotective effect in a subject that has a central nervous system (CNS) injury.
  • 26. (canceled)
  • 27. The method of claim 14, wherein the method is used in a treatment of multiple sclerosis (MS) disease or autism spectrum disorder (ASD).
  • 28. A method of selectively modulating gene expression profile in an immune cell within a neural tissue, comprising contacting the neural tissue with an effective amount of a compound that inhibits integrin signaling, wherein the compound decreases CD49a function.
  • 29.-31. (canceled)
  • 32. The method of claim 28, wherein the method increases the expression of a gene that enhances the migration of myeloid cells or neuroprotection.
  • 33. The method of claim 32, wherein the method increases the expression of a gene selected from the group consisting of Cxcl2, Ccl3, Ccl4, Cxcl16, Ccr2, Spp1, Arg1, Trem2, and Tgfbi.
  • 34. The method of claim 33, wherein the method increases the expression of the gene by at least about 10%.
  • 35. The method of claim 28, wherein the method decreases the expression of a gene selected from the group consisting of Ccl24, Ccl7, Ccl12, and Ccl8.
  • 36.-37. (canceled)
  • 38. The method of claim 28, wherein the compound is an antibody or antigen binding fragment thereof that specifically binds to CD49a.
  • 39.-40. (canceled)
  • 41. The method of claim 28, wherein the neural tissue is in a subject, further comprising administering the compound to the subject.
  • 42. The method of claim 41, wherein the administration of the compound is selected from the group consisting of intracerebroventricular administration, intra cisterna magna administration, dermal application to the scalp skin of the subject, subcutaneous administration, intravenous administration, intramuscular administration, intra-articular administration, intra-synovial administration, intrasternal administration, intrathecal administration, intrahepatic administration, intralesional administration, intracranial administration, intraocular administration, intraperitoneal administration, trans dermal administration, buccal administration, sublingual administration, topical administration, local injection, and surgical implantation.
  • 43. (canceled)
  • 44. The method of claim 41, wherein the method reduces neuron death in a subject that has a central nervous system (CNS) injury.
  • 45. (canceled)
  • 46. The method of claim 41, wherein the method is used in a treatment of multiple sclerosis (MS) disease or autism spectrum disorder (ASD).
  • 47.-48. (canceled)
CROSS-REFERENCE TO RELATED APPLICATIONS

This application claims priority to U.S. Provisional Application No. 62/792,342, filed on Jan. 14, 2019, the entire contents of which are incorporated herein by reference.

STATEMENT REGARDING FEDERALLY SPONSORED R&D

This invention was made with government support under Grant Nos. NS096967 and AG034113 awarded by the National Institutes of Health. The government has certain rights in the invention.

PCT Information
Filing Document Filing Date Country Kind
PCT/US2020/013477 1/14/2020 WO 00
Provisional Applications (1)
Number Date Country
62792342 Jan 2019 US