Patent Grant
7678374
1. Field of the Invention
The present invention relates generally to virus-like particles (VLPs) for use in delivering a polypeptide of interest to a subject and to nucleic acid molecules encoding same. In particular, the present invention takes advantage of features of avian hepadnavirus particles to generate stable recombinant VLPs which are useful in the delivery to a subject of a polypeptide of interest. The polypeptide of interest may comprise one or more antigens capable of eliciting an immune response. The VLPs comprising the polypeptide of interest are useful for delivery of an antigen to the immune system of a subject or in the presentation of epitopes for the detection of antibodies in in vitro assays. The present invention extends, inter alia, to plasmids, cells, kits and methods which are useful in the generation, production, delivery and monitoring of the instant VLPs.
2. Description of the Prior Art
Bibliographic details of the publications referred to by author in this specification are collected at the end of the description.
Reference herein to prior art, including any one or more prior art documents, is not to be taken as an acknowledgment, or suggestion, that said prior art is part of the state of the art.
The hepadnaviruses are a family of enveloped DNA viruses. Assembly of mammalian hepadnaviruses, such as hepatitis B virus, is complex and mature virions are formed by the interaction of preformed cytoplasmic core particles with pre-assembled surface proteins on the host endoplasmic reticulum (ER) membrane. Following interaction with appropriate portions of envelope proteins, the nucleocapsids bud into the lumen of the ER along with a 1000-fold excess of empty, subviral particles (SVPs) and assembly is completed in an intermediate, pre-Golgi compartment (as reviewed by Nassal, M., Curr. Top. Microbiol. Immunol., 214:297-337, 1996).
In many studies, virus-like particles (VLPs), which lack nucleocapsids, have proven to be promising candidate vaccines since they: (i) are non-infectious and therefore safe to produce and use, (ii) are more immunogenic than subunit vaccines because they provide the necessary spatial structure for display of epitopes, and (iii) elicit humoral, cell-mediated and importantly, mucosal immunity (Krueger, et al., Biol. Chem. 380:275-276, 1999).
A recent example of a successful VLP vaccine, currently in clinical trials, is the recombinant papillomavirus major capsid protein (L1) VLP, which prevents infection by inducing a strong neutralizing antibody response (Frazer, Virus Research, 89:271-274, 2002).
The hepatitis B virus (HBV) subviral particle (HBsAg-S) has been viewed as a candidate to produce recombinant VLPs. Several studies have examined which domains are suitable for insertion of foreign epitopes (Bruss et al., EMBO J., 13:2273-2279, 1994., 1994; Delpeyroux et al, J. Mol. Biol. 195:343-350,1987), including N terminal fusion of the preS domain (Prange, et al, J. Gen. Virol. 76:2131-2140, 1995).
Most recently, particles carrying small, 35 amino acid insertions of the hepatitis C virus (HCV) hypervariable region 1 of the E2 envelope protein into the exposed ‘a’ determinant in the second hydrophilic loop have successfully elicited antibody responses (Netter, et al, J. Virol. 75:2130-2141, 2001). Notably, there have been limitations to the size of the inserts tolerated for particle stability and a loss of immune reactivity to the ‘a’ determinant of HBsAg when particles were produced in a mammalian cell system (Prange et al, 1995, supra; Bruss et al, J. Virol. 65:3813-3820, 1991).
Particle instability with large fusions has recently been overcome with a Dengue virus/HBsAg fusion by expression in yeast (Bisht, et al, J. Biotechnology. 99:97-110, 2002).
However, in all these cases, in order to assemble chimeric particles, the recombinant S protein must assemble with wild type S subunits. These extended S chains present a difficulty for inclusion in the tight envelope lattice formed by the HBsAg (which excludes L) and so their number is limited, and consequently the immune response generated to the foreign epitopes is low.
Accordingly, there is a need for improved VLPs which efficiently incorporate polypeptides of interest.
Throughout this specification and the claims which follow, unless the context requires otherwise, the word “comprise”, and variations such as “comprises” and “comprising”, will be understood to imply the inclusion of a stated integer or step or group of integers or steps but not the exclusion of any other integer or step or group of integers or steps.
Nucleotide and amino acid sequences are referred to by sequence identifier numbers (SEQ ID NO:). The SEQ ID NOs: correspond numerically to the sequence identifiers <400>1, <400>2, etc. A summary of sequence identifiers is provided in Table 1. A sequence listing is provided after the claims.
The envelope protein of duck hepatitis B virus (DHBV) and other avian hepadnaviruses consists of two proteins, the large envelope protein (L) and the small envelope protein (S), which are produced by differential in-frame translation initiation from a single preS/S open reading frame. L and S polypeptides have a common C terminal membrane spanning or S domain, while L has an approximately 160 amino acid N-terminal extension (or preS domain) encompassing a receptor binding region. The S polypeptide is the major viral envelope constituent, which determines envelope curvature and can drive particle secretion even in the absence of the nucleocapsid. In contrast L polypeptide can only be exported when co-assembled with S.
The assembly of DHBV envelope proteins and their involvement in host cell entry are closely linked to a unique topological switch adopted by hepadnaviruses, in which a large N-terminal preS domain of the L protein is post-translocationally translocated across the ER membrane. This process is regulated so that generally only approximately 50% of molecules have translocated N-termini and the mature particle contains mixed internal/external topologies, including a partially translocated or intermediate form.
The present invention is predicted, in part, on the surprising discovery that substantial regions of L polypeptide of DHBV are dispensable for L translocation and particle assembly, including regions in the S domain which have the same amino acid sequence as S polypeptide regions essential for particle assembly. Accordingly, L polypeptides are more flexible in their particle association than S polypeptides and thus open to more extensive manipulation.
The present invention, therefore, provides virus-like particles (VLPs) which primarily contain a small envelope (S) polypeptide or a functional derivative or homolog thereof. In addition, and in accordance with the present invention however, they comprise a fusion polypeptide comprising a polypeptide of interest (POI) and at least a particle associating portion of a large envelope (L) polypeptide or a functional derivative or homolog thereof. Because the L polypeptide is not excluded during VLP assembly and because it can be extensively manipulated to vector a heterologous polypeptide without significantly affecting particle stability, the VLP of the present invention will be useful, inter alia, in the delivery of a polypeptide of interest to a subject. In addition, because epitopes of an antigenic POI will be effectively displayed in a VLP, the VLPs are useful in assays for the detection of antibodies.
The present invention is described with particular reference to DHBV, however, the invention extends to L and S polypeptides from other viruses with L and S envelope polypeptides proteins in which L is not excluded from particle assembly. For example, L and S polypeptides from other avian hepadnaviruses are contemplated such as, but not limited to such heron (HHBV), snow goose (SGHBV) and hepadnaviruses which exhibit similar subviral particle morphology to DHBV, i.e., with L and S envelope proteins. The S domains of L and S polypeptides are highly conserved within all hepadnaviruses, exhibiting for example up to 70% amino acid similarity in the region between TM1 and TM2.
The present invention provides a virus-like particle (VLP) comprising i) a polypeptide comprising a polypeptide of interest (POI) and at least a particle associating portion of a large envelope (L) polypeptide of an avian hepadnavirus or a functional derivative or homolog thereof, and ii) a small envelope (S) polypeptide of an avian hepadnavirus or a functional derivative or homolog thereof.
The present invention furthermore provides, a virus-like particle (VLP) comprising i) a fusion polypeptide comprising a polypeptide of interest (POI) and at least a particle associating portion of a large envelope (L) polypeptide of DHBV or a functional derivative or homolog thereof, and ii) a small envelope (S) polypeptide of DHBV or a functional derivative or homolog thereof.
By introducing one or more POIs into the L polypeptide, the POI is translocated along with L into a particle structure made up primarily of S polypeptide.
Although several examples of particle associating portions of the L polypeptide are provided, based on the teaching provided herein it would be well within the skill of the addressee to generate smaller or larger portions of L-polypeptide and determine whether they, together with a heterologous (or indigenous) protein of interest, are capable of particle association within a VLP. Accordingly, the present invention is in no way limited to the exemplified constructs.
The virus-like particles of the present invention are useful in vaccine compositions to promote an effective immune response. In particular embodiments, the virus-like particles are advantageously a suitable size to be taken up by antigen presenting cells, such as dendritic cells. For example, DHBV VLPs are significantly larger than mammalian HBV VLPs.
Recombinant VLPs of the present invention are prepared using expression plasmids comprising nucleic acid molecules encoding the recombinant L polypeptides separately or together with S polypeptides. Expression plasmids are conveniently in a form suitable for expression in yeast, baculovirus or avian or mammalian expression systems. Plasmids comprising nucleic acid molecules encoding the instant recombinant L polypeptides may also be used to deliver nucleic acid constructs directly to the cells of a subject.
Alternatively, kits are contemplated to facilitate recombinant production of the instant fusion proteins.
The present invention furthermore provides methods for producing a recombinant virus-like particle and compositions comprising a virus-like particle derived from L and S polypeptide of avian hepadnaviruses or other non-L excluding viruses for use as a vaccine or source of antigen wherein the L polypeptide comprises one or more antigens of interest derived from one or more heterologous sources.
The present invention is predicated in part on the finding that L polypeptide of DHBV can be substantially modified yet still retain the ability to associate with S polypeptides of DHBV during virus-like particle assembly.
It is proposed herein to use an L polypeptide or a functional derivative or homolog thereof to deliver a polypeptide or peptide of interest to a subject. In particular, it is proposed to use an L polypeptide to deliver antigens of interest to the immune system of a subject as part of a virus-like particle.
In a broad embodiment the present invention provides a virus-like particle (VLP) comprising a fusion (chimeric) polypeptide comprising a polypeptide of interest (POI) and a particle associating portion of a large envelope (L) polypeptide.
The virus-like particle is primarily composed of a small envelope (S) polypeptide.
Accordingly, the present invention furthermore provides a VLP comprising i) fusion polypeptide comprising a polypeptide of interest (POI) and at least a particle associating portion of a large envelope (L) polypeptide or a functional derivative or homolog thereof, and ii) a small envelope (S) polypeptide of an avian hepadnavirus or a functional derivative or homolog thereof.
More specifically, the present invention furthermore provides a VLP comprising i) a fusion polypeptide comprising a polypeptide of interest (POI) and at least a particle associating portion of a large envelope (L) polypeptide of DHBV or a functional derivative or homolog thereof, and ii) a small envelope (S) polypeptide of DHBV or a functional derivative or homolog thereof.
Preferably at least part of said POI is exposed on the surface of the virus-like particle.
The term “virus-like particle” is used in its broadest sense to mean a particle or three dimensional proteinaceous structure which, like sub-viral particles of enveloped viruses, form particles by self-assembly or folding of envelope polypeptides within a lipid bilayer. The virus-like particles of the present invention may be recombinant or synthetic or may comprise a combination of synthetic and recombinant components.
Reference herein to the singular form such as “a”, “an” or “the” includes the plural aspect unless the context clearly specifies otherwise. Thus, reference for example to “a polypeptide of interest” includes a single polypeptide, as well as two or more such polypeptides.
Reference herein to the term “polypeptide” means a polymer of amino acids and should not be limited to any particular length. Therefore, the term includes proteins, oligopeptides, peptides and epitopes. The term does not exclude modifications of the polypeptide, for example myristylation, glycosylation, phosphorylation, addition of N-terminal signal sequences and the like. Included within the definition are, for example, polypeptides containing one or more analogs of an amino acid (including for example, unnatural amino acids such as those give in Table 2) or polypeptides with substituted linkages.
Analogs contemplated herein include but are not limited to modification to side chains, incorporating of unnatural amino acids and/or their derivatives during peptide, polypeptide or protein synthesis and the use of crosslinkers and other methods which impose conformational constraints on the proteinaceous molecule or their analogs.
Examples of side chain modifications contemplated by the present invention include modifications of amino groups such as by reductive alkylation by reaction with an aldehyde followed by reduction with NaBH4; amidination with methylacetimidate; acylation with acetic anhydride; carbamoylation of amino groups with cyanate; trinitrobenzylation of amino groups with 2,4,6-trinitrobenzene sulphonic acid (TNBS); acylation of amino groups with succinic anhydride and tetrahydrophthalic anhydride; and pyridoxylation of lysine with pyridoxal-5-phosphate followed by reduction with NaBH4.
The guanidine group of arginine residues may be modified by the formation of heterocyclic condensation products with reagents such as 2,3-butanedione, phenylglyoxal and glyoxal.
The carboxyl group may be modified by carbodiimide activation via O-acylisourea formation followed by subsequent derivitization, for example, to a corresponding amide.
Sulphydryl groups may be modified by methods such as carboxymethylation with iodoacetic acid or iodoacetamide; performic acid oxidation to cysteic acid; formation of a mixed disulphides with other thiol compounds; reaction with maleimide, maleic anhydride or other substituted maleimide; formation of mercurial derivatives using 4-chloromercuribenzoate, 4-chloromercuriphenylsulphonic acid, phenylmercury chloride, 2-chloromercuri-4-nitrophenol and other mercurials; carbamoylation with cyanate at alkaline pH, palmitylation of cysteine residues.
Tryptophan residues may be modified by, for example, oxidation with N-bromosuccinimide or alkylation of the indole ring with 2-hydroxy-5-nitrobenzyl bromide or sulphenyl halides. Tyrosine residues on the other hand, may be altered by nitration with tetranitromethane to form a 3-nitrotyrosine derivative.
Modification of the imidazole ring of a histidine residue may be accomplished by alkylation with iodoacetic acid derivatives or N-carbethoxylation with diethylpyrocarbonate.
Examples of incorporating unnatural amino acids and derivatives during peptide synthesis include, but are not limited to, use of norleucine, 4-amino butyric acid, 4-amino-3-hydroxy-5 -phenylpentanoic acid, 6-aminohexanoic acid, t-butylglycine, norvaline, phenylglycine, ornithine, sarcosine, 4-amino-3-hydroxy-6-methylheptanoic acid, 2-thienyl alanine and/or D-isomers of amino acids. A list of unnatural amino acid, contemplated herein is shown in Table 2.
Crosslinkers can be used, for example, to stabilize 3D conformations, using homo-bifunctional crosslinkers such as the bifunctional imido esters having (CH2)n spacer groups. with n=1 to n=6, glutaraldehyde, N-hydroxysuccinimide esters and hetero-bifunctional reagents which usually contain an amino-reactive moiety such as N-hydroxysuccinimide and another group specific-reactive moiety such as maleimido or dithio moiety (SH) or carbodiimide (COOH). In addition, peptides can be conformationally constrained by, for example, incorporation of Cα and Nα-methylamino acids and the introduction of double bonds between Cα and Cβ atoms of amino acids.
The terms “fusion polypeptide” or “chimeric polypeptide” or “hybrid polypeptide ” are interchangably used to mean a polypeptide, protein or peptide comprising two or more associated polypeptides which are expressed as part of the same expression product, or which are generated by synthetic means. Fusion polypeptides may comprise two or more L and POI polypeptides and intervening regions such as, for example, linker or spacer regions. In particular, regions which permit or directly or indirectly facilitate a surface topology or increase protease resistance for the polypeptide of interest in the particle are contemplated, for example, N-terminal signal sequences. An example of a signal sequence is preprolactin however there are many other suitable signal sequences, as will be understood by one of skill in the art. An example of a spacer region is a transmembrane domain. Alternatively, or in addition, regions which promote a cytosolic topology may be included. Polypeptide topology in a viral particle may be assessed for example by protease protection assay or by determining interactivity with antibodies determined by the L polypeptide, S polypeptide, the polypeptide of interest or epitopes generated through fusion of these polypeptides. According, the term “fusion” in “fusion polypeptide” is not used in the sense of “viral fusion”.
The term “polypeptide of interest” means any polypeptide which is advantageously delivered to a subject as part of a virus-like particle. For example, two or more or a matrix of polypeptides involved in promoting and/or mediating a particular biochemical or physiological reaction may be delivered to a subject in viral particle form. A particular reaction contemplated is an immune response to an antigen. Accordingly the term includes any antigenic polypeptide of interest. Antigenic polypeptides may be co-expressed with immunopotentiating polypeptides such as cytokines as is well known in the art. The polypeptides and peptides of the present invention (POIs) may furthermore be expressed or synthesised in L with molecules which serve as targeting and/or marker molecules such as, without limitation, molecules which assist in targeting and/or marking particular cells, such as dendritic or other antigen presenting cells.
“Subject” as used herein refers to an animal, preferably a mammal and more preferably human who can benefit from administration of the viral particles of the present invention. There is no limitation on the type of animal that could benefit from the presently described molecules. A patient regardless of whether a human or non-human animal may be referred to as an individual, subject, animal, host or recipient. The molecules and methods of the present invention have applications in human medicine, veterinary medicine as well as in general, domestic or wild animal husbandry. For convenience, an “animal” includes an avian species such as a poultry bird, an aviary bird or game bird.
The preferred animals are humans or other primates, livestock animals, laboratory test animals, companion animals or captive wild animals.
Examples of laboratory test animals include ducks, snow geese, mice, rats, rabbits, guinea pigs and hamsters. Rabbits and rodent animals, such as rats and mice, provide a convenient test system or animal model. Livestock animals include sheep, cows, pigs, goats, horses and donkeys. Non-mammalian animals such as avian species, zebrafish and amphibians are also contemplated.
The terms “antigen” or “antigenic polypeptide” are used in their broadest sense to include polypeptides which are capable of inducing an immune response in a subject. The antigenic polypeptide may comprise single epitope regions through to multiple epitope regions including repeated epitope regions. The antigenic polypeptide may derive from a single or multiple sources although antigens from infectious agents, such as, for example, viruses, bacteria, fungi, protozoa, trematodes, nematodes, prions and the like are contemplated, as are tumour-related antigens. Antigenic regions of many agents and tumour-related proteins are well known in the art. Antigens are, for example, those from parasites, bacteria, viruses, cancers and those described herein include antigens from E2 polypeptide of Hepatitis, MSP2 polypeptide from P. falciparum and H protein from measles.
As is well know to those skilled in the art, effective immune responses for prophylactic or therapeutic vaccines generally elicit strong CTL and T-helper cell responses as well as strong humoral responses.
The antigenic polypeptide of interest may comprise epitope regions from two or more polypeptides from different organisms, species or subspecies. For example, viral and bacterial or multiple viral or multiple bacterial infectious may be vaccinated for simultaneously.
The phrase “particle associating portion” means for all L polypeptides, that or those portions of the L polypeptide which is/are required for L polypeptide incorporation into virus-like particles. For example, the TM1 region of the S domain of L is not required for L association with the particle and may be omitted from the L-polypeptide used herein. Indeed, as contemplated herein, the sequences downstream of TM1 (or downstream of TM2 and the 5′ cysteine loop) of L polypeptide are sufficient for particle association. Similarly, the preS domain of L is not required for assembly of L in the particles. The S domain of L absent TM1 is an example of a particle associating portion of L. Many different particle association portions are clearly available pursuant to the present invention. The nature of this portion is flexible and may be determined empirically using methods known in the art and referred to herein.
Although a minimum functional portion of L may be advantageous in some applications, the present invention extends full length L polypeptides interspersed with a POI or wherein the POI is terminally appended. Preferably the POI is introduced into surface exposed portions of L.
The term “derived from” means that a particular element or group of elements has originated from the source described, but has not necessarily been obtained directly from the specified source.
The term “isolated” includes reference to VLPs having undergone at least one purification step, conveniently described in terms of the % of pure material in a sample. Preferred forms include material which is at least 50% pure, more preferably at least 60%, more preferably at least 70%, more preferably at least about 80%, still more preferably at least about 90% pure VLP material in a sample.
One of the advantages of the present invention is that VLPs may be produced of generally consistent size.
In another aspect of the present invention an isolated virus-like particle (VLP) is contemplated comprising i) a fusion polypeptide comprising a polypeptide of interest (POI) and at least a portion of the S domain of a large envelope (L) polypeptide of an avian hepadnavirus such as DHBV or a functional derivative or homolog thereof; and ii) a small envelope (S) polypeptide of an avian hepadnavirus such as DHBV or a functional derivative or homolog thereof, wherein at least a part of said POI is exposed on the surface of the virus-like particle.
Signal sequences may conveniently be employed in order to effect expression of particular POI/L polypeptides in some expression systems, as required. As described herein, the presence of a strong signal sequence is also used to enhance the amount of POI expressed on the surface of the VLP.
Exemplary portions of L are amino acids 24 to 167 of DHBV S domain or, more preferably at least TM2 (including the 5′ cysteine loop between TM1 and TM2) and downstream sequences of L polypeptide of DHBV.
In one particular embodiment of the present invention, the polypeptide of interest is located at the amino terminal side of the S domain amino acid sequence of the L polypeptide or the S domain minus the TM1 domain. In another embodiment, the POI is located in the pre-S domain of the L polypeptide or N terminally to the L polypeptide.
By introducing one or more POIs into the pre-S domain of L or N terminally to the S domain of L or N-terminally to the S domain absent TM1, the POI is translocated along with L into a particle structure made up primarily of S polypeptide. This facilitates a high copy number of POI per VLP.
In one embodiment the virus-like particles of the present invention are useful in vaccine compositions to promote an effective immune response. In particular, the virus like particles are advantageously a suitable size to be taken up by antigen presenting cells, such as dendritic cells. Specifically, in relation to mammalian hepadnavirus particles, these are typically approximately 20 nanometers, while those of avian hepadnaviruses are pleomorphic and are typically between 35 and 60 nanometers in diameter. An effective immune response is one which is capable of reducing the number of target antigens in a subject and may prevent infections or development of disease conditions (prophylactic vaccine) or may treat current infections or conditions (therapeutic vaccination).
Without being bound to any particular theory, the VLPs of the present invention are capable of stimulating humoral and/or cell mediated immune responses. Heterologous antigens are targeted to appropriate pathways of MHC class 1 and class 11 antigen processing and presentation, and are targeted for dendritic cells which initiate, in particular T-cell responses.
In another aspect, preferred L polypeptides comprise or consist of an amino acid sequence substantially set forth in SEQ ID NO: 7 and SEQ ID NO: 9, or an amino acid sequence having at least 50% similarity to SEQ ID NO: 7 or SEQ ID NO: 9.
Even more preferably, the % similarity exceeds 60% identity, more preferably 70% identity, still more preferably at least about 80%, still more preferably about 90-95% identity.
Preferred L polypeptides are derived from an avian hepadnavirus such as but not limited to DHBV. Importantly, the hepadnavirus or the envelope polypeptides employed in the present invention do not exclude L from VLP assembly.
Functional derivatives of the instant L polypeptide include fragments, parts or portions of the parent molecule which retain the ability of the L polypeptide to associate with the particle formed by S polypeptide, or at least where such ability is not substantially lost.
Functional derivatives of the instant S polypeptide retain the ability of the ability of the S polypeptide to form virus-like particles, or at least where such ability is not substantially lost.
Substantial loss would mean that the L particle is assembled with S in particles at a ratio of less than about 1:1 or more preferably less than about 1:2, even more preferably less than about 1:3, still even more preferably less than about 1:4.
A preferred S polypeptide is derived from an avian hepadnavirus such as but not limited to DHBV or comprises or consists of an amino acid sequence substantially set forth in SEQ ID NO: 13.
The term “functional derivative” also extends to polypeptides having one or more amino acid mutations or modifications. Mutations may be derived from additions, insertions, deletions or substitutions of amino acids. Substitutions are preferably conservative amino acid substitutions within the following groups: glycine and alanine; valine, isoleucine and leucine; aspartic acid and glutamic acid; asparagine and glutamine; serine and threonine; lysine and arginine; and phenyl alanine and tyrosine. Modifications may include the addition of flanking sequences which enhance viral particle assembly or stability.
Preferably, derivatives have at least 60% amino acid similarity, or more preferably at least 80%, or most preferably 90% or greater similarity to all or part of the parent molecules.
Accordingly, in another embodiment, the present invention provides a VLP comprising a fusion polypeptide comprising a POI and a particle associating portion of an L polypeptide wherein said L polypeptide comprises a sequence of amino acids substantially as set forth in SEQ ID NO: 7 or SEQ ID NO: 9 or an amino acid sequence having at least about 50% similarity thereto, or a functional derivative or homolog thereof
In another embodiment, the present invention provides a VLP comprising a fusion polypeptide comprising a POI and a particle associating portion of an L polypeptide wherein said L polypeptide is encoded by a sequence of nucleotides substantially as set forth in SEQ ID NO: 6 or SEQ ID NO: 8 or a sequence of nucleotides capable of hybridizing to SEQ ID NO: 6 or SEQ ID NO: 8, or a complementary form thereof under medium stringency conditions.
The VLPs of the present invention are assembled in vitro or in vivo using techniques which are well known to those of ordinary skill in the art such as those described or referred to herein or summarised in Sambrook et al. Specifically expression plasmids designed to express one or more recombinant envelope proteins as described herein are generated.
Accordingly, in another aspect, the present invention provides an isolated or recombinant polypeptide for use in the assembly of a VLP comprising a polypeptide of interest (POI) and at least a particle-associating portion of a large envelope polypeptide (L) of an avian hepadnavirus such as DHBV or a functional derivative or homolog thereof.
In a related aspect, the present invention provides a recombinant polypeptide capable of assembling into a VLP when expressed in a cell, said polypeptide comprising a polypeptide of interest (POI) and at least a particle-associating portion of a large envelope polypeptide (L) of an avian hepadnavirus such as DHBV or a functional derivative of homolog thereof.
Preferably, the particle-associating portion of L comprises at least the S domain of L or the S domain of L minus the TM1 domain or a functional derivative thereof.
Still more preferably, the POI is located in the pre-S domain of L or at the amino terminal side of the S domain of L, or the S domain minus the TM1 domain of L.
In accordance with this aspect of the present invention, the L polypeptide comprises an amino acid sequence substantially as set forth in SEQ ID NO: 7 or SEQ ID NO: 9 or comprises an amino acid sequence having at least 50% similarity to SEQ ID NO: 7 or SEQ ID NO: 9.
As described herein, the particle-associating portion of L polypeptide consists of an amino acid sequence substantially as set forth in SEQ ID NO: 7 or SEQ ID NO: 9 or a functional derivative thereof comprising an amino acid sequence having at least 50% similarity to SEQ ID NO: 7 or SEQ ID NO: 9.
Avian hepadnaviruses exhibit considerable sequence identity and accordingly, sequences having greater than 70% similarity or identity are contemplated.
The present invention extends to the use in the manufacture of a VLP of an L polypeptide or particle associating portion thereof is encoded by a sequence of nucleotides substantially as set forth in SEQ ID NO: 6 or SEQ ID NO: 8 or having at least about 50% similarity to SEQ ID NO: 6 or SEQ ID NO: 8 or a contiguous sequence of nucleotides capable of hybridizing to a complementary form SEQ ID NO: 6 or SEQ ID NO: 8 under hybridisation conditions of medium stringency.
In a further aspect of the invention, the L polypeptide further comprises a signal sequence. Such sequences are particularly useful in enhancing surface expression of a POI in the VLP.
Preferred L polypeptides are DHBV L polypeptide or functional derivative thereof.
In yet another aspect, the present invention provides a nucleic acid molecule comprising a sequence of nucleotides encoding a fusion polypeptide suitable for use in making a recombinant VLP, wherein said nucleic acid molecule encodes a POI and a particle associating portion of an L polypeptide and wherein the sequence of nucleotides encoding the particle associating portion of an L polypeptide comprises the sequence set forth in SEQ ID NO: 6 or SEQ ID NO: 8 or a contiguous sequence of nucleotides capable of hybridizing thereto or to a complementary form thereof under low stringency hybridisation conditions, or a functional derivative or homolog thereof.
In yet still another aspect, the present invention provides a nucleic acid molecule comprising a sequence of nucleotides encoding a fusion polypeptide suitable for use in making a recombinant VLP, wherein said nucleic acid molecule encodes a POI and a particle associating portion of an L polypeptide and wherein the nucleic acid encoding the particle associating portion of an L polypeptide encodes the amino acid sequence set forth in SEQ ID NO: 7 or SEQ ID NO: 9 or an amino acid sequence having at least about 50% similarity thereto, or a functional derivative or homolog thereof.
In another aspect, the present invention provides a nucleic acid molecule comprising a sequence of nucleotides encoding a fusion polypeptide suitable for use in making a recombinant VLP, wherein said nucleic acid molecule encodes a POI and a particle associating portion of an L polypeptide and wherein the nucleic acid encoding the particle associating portion of an L polypeptide encodes the amino acid sequence set forth in SEQ ID NO: 7 or SEQ ID NO: 9
Yet another aspect of the present invention provides a recombinant nucleic acid molecule for use in making a recombinant VLP, said nucleic acid molecule comprising a sequence of nucleotides encoding at least a particle-associating portion of an L polypeptide of an avian hepadnavirus such as DHBV or a functional derivative or homolog thereof comprising one or more cloning sites suitable for accepting a second nucleic acid molecule encoding one or more polypeptide of interest, wherein said polypeptides of interest is expressed as a fusion polypeptide with said L polypeptide. The expression vectors of the present invention may also conveniently express other envelope proteins such as L or, preferably, S polypeptide. Thus bidirectional or bicistronic promoters may routinely be employed in order to express recombinant L and also S polypeptide from the same vector. In addition, signal sequences are employed to enhance expression including surface expression, of the POI. Cells and kits comprising the instant recombinant nucleic acid molecules are expressly encompassed.
The present invention therefore provides a method of delivering a POI to a subject or cell comprising expressing the POI in a VLP comprising L polypeptide from an avian hepadnavirus such as DHBV or a functional derivative or homolog thereof such that at least part of the POI is expressed on the surface of the VLP. In one aspect, the VLP is generated in an in vitro expression system. In another aspect, the VLP is generated in vivo. Where the POI is an antigenic polypeptide, the preferred cells are cells of the immune system such as antigen presenting cells.
Complementary forms of all or part the nucleic acid molecules of the present invention are expressly contemplated.
The terms “nucleic acids”, “nucleotide” and “polynucleotide” include RNA, cDNA, genomic DNA, synthetic forms and mixed polymers, both sense and antisense strands, and may be chemically or biochemically modified or may contain non-natural or derivatized nucleotide bases, as will be readily appreciated by those skilled in the art. Such modifications include, for example, labels, methylation, substitution of one or more of the naturally occurring nucleotides with an analog (such as the morpholine ring), internucleotide modifications such as uncharged linkages (e.g. methyl phosphonates, phosphotriesters, phosphoamidates, carbamates, etc.), charged linkages (e.g. phosphorothioates, phosphorodithioates, etc.), pendent moieties (e.g. polypeptides), intercalators (e.g. acridine, psoralen, etc.), chelators, alkylators and modified linkages (e.g. α-anomeric nucleic acids, etc.). Also included are synthetic molecules that mimic polynucleotides in their ability to bind to a designated sequence via hydrogen binding and other chemical interactions. Such molecules are known in the art and include, for example, those in which peptide linkages substitute for phosphate linkages in the backbone of the molecule.
The term “similarity” as used herein includes exact identity between compared sequences at the nucleotide or amino acid level. Where there is non-identity at the nucleotide level, “similarity” includes differences between sequences which result in different amino acids that are nevertheless related to each other at the structural, functional, biochemical and/or conformational levels.
Where there is non-identity at the amino acid level, “similarity” includes amino acids that are nevertheless related to each other at the structural, functional, biochemical and/or conformational levels. In a particularly preferred embodiment, nucleotide and sequence comparisons are made at the level of identity rather than similarity.
Terms used to describe sequence relationships between two or more polynucleotides or polypeptides include “reference sequence”, “comparison window”, “sequence similarity”, “sequence identity”, “percentage of sequence similarity”, “percentage of sequence identity”, “substantially similar” and “substantial identity”. A “reference sequence” is at least 9 to 12 but frequently 15 to 18 and often at least 21 to 25 or above, such as 30 monomer units, inclusive of nucleotides and amino acid residues, in length. Because two polynucleotides may each comprise (1) a sequence (i.e. only a portion of the complete polynucleotide sequence) that is similar between the two polynucleotides, and (2) a sequence that is divergent between the two polynucleotides, sequence comparisons between two (or more) polynucleotides are typically performed by comparing sequences of the two polynucleotides over a “comparison window” to identify and compare local regions of sequence similarity. A “comparison window” refers to a conceptual segment of typically 12 contiguous residues that is compared to a reference sequence. The comparison window may comprise additions or deletions (i.e. gaps) of about 20% or less as compared to the reference sequence (which does not comprise additions or deletions) for optimal alignment of the two sequences. Optimal alignment of sequences for aligning a comparison window may be conducted by computerised implementations of algorithms (GAP, BESTFIT, FASTA, and TFASTA in the Wisconsin Genetics Software Package Release 7.0, Genetics Computer Group, 575 Science Drive Madison, Wis., USA) or by inspection and the best alignment (i.e. resulting in the highest percentage homology over the comparison window) generated by any of the various methods selected. Reference also may be made to the BLAST family of programs as, for example, disclosed by Altschul et al, Nucleic Acid Research, 25:3389-3402, 1997. A detailed discussion of sequence analysis can be found in Unit 19.3 of Ausubel et al, supra.
The terms “sequence similarity” and “sequence identity” as used herein refers to the extent that sequences are identical or functionally or structurally similar on a nucleotide-by-nucleotide basis or an amino acid-by-amino acid basis over a window of comparison. Thus, a “percentage of sequence identity”, for example, is calculated by comparing two optimally aligned sequences over the window of comparison, determining the number of positions at which the identical nucleic acid base (e.g. A, T, C, G, I) or the identical amino acid residue (e.g. Ala, Pro, Ser, Thr, Gly, Val, Leu, Ile, Phe, Tyr, Trp, Lys, Arg, His, Asp, Glu, Asn, Gln, Cys and Met) occurs in both sequences to yield the number of matched positions, dividing the number of matched positions by the total number of positions in the window of comparison (i.e., the window size), and multiplying the result by 100 to yield the percentage of sequence identity. For the purposes of the present invention, “sequence identity” will be understood to mean the “match percentage” calculated by the DNASIS computer program (Version 2.5 for windows; available from Hitachi Software engineering Co., Ltd., South San Francisco, Calif., USA) using standard defaults as used in the reference manual accompanying the software. Similar comments apply in relation to sequence similarity. Conservative amino acid changes may be considered to provide similar sequences but not identical sequences.
Particularly preferred nucleic acid molecules encode a particle-associating portion of an L polypeptide and comprise a contiguous sequence of nucleotides substantially as set forth in SEQ ID NO: 6 or SEQ ID NO: 8 or a nucleotide sequence having at least about 50% similarity to SEQ ID NO: 6 or SEQ ID NO: 8. Preferably, the % similarity is in relation to the sequence encoding a particle-associating portion of L polypeptide.
Furthermore, the present invention contemplates nucleic acid molecules encoding a particle-associating portion of an L polypeptide comprising a sequence of nucleotides substantially as set forth in SEQ ID NO: 6 or SEQ ID NO: 8 or a nucleotide sequence capable of hybridizing to SEQ ID NO: 6 or SEQ ID NO: 8 or a complementary form thereof under medium stringency conditions.
Functional derivatives of the instant nucleic acid molecules include fragments thereof or sequences having one or more nucleotide mutations or modifications.
Mutations include one or more nucleotide deletions, insertions or substitutions. Alternatively or in addition, derivatives may be modified by the addition of sequences or moieties to enhance function such as enhanced stability or activity or to introduce new activity. For example, modifications may comprise the addition of fusagenic agents to enhance membrane permeability, modifications to affect pre or post-transcriptional modifications events, or to generate fusion proteins comprising labels, tags and other modifications for identification, purification and so forth.
Functional derivatives of the subject nucleic acid molecules retain the ability of the parent molecule to encode a polypeptide having the particle assembly function of S polypeptide or the particle associating function of L polypeptide.
Fragments of the nucleic acid molecules may include parts or one or more portions thereof, which have the function of the parent.
Functional homologs of the instant nucleic acid sequences include orthologus gene sequences from different species which are related by common phylogenic decent and also gene sequences from other species which are similar to the instant nucleic acid molecules as a result of convergent evolution, wherein the homologs are functionally and structurally related to the instant nucleic acid sequences and are consequently readily identified and/or isolated by hybridization based methods or by sequence comparison with published genome databases. For example, the nucleotide sequence of approximately 20 avian hepadnaviruses are publicly available (Triyatni et al, J. Gen. Virol, 82:373-378, 2001).
Similarity at the nucleic acid level may be assessed in assays exploiting different stringency of hybridization conditions as is well known in the art and is, for example, described in Ausubel et al, supra.
Reference herein to stringent hybridization conditions preferably means conditions which permit selective hybridization or annealing between molecules which are substantially similar. The hybridization temperature composition and ionic strength of the hybridization solution which meet this criteria will vary depending upon a number of well characterized factors such as length, degree of complementarity and GC content. For longer sequences it is generally possible to calculate the expected melting point of duplex nucleic acid sequences under various conditions. Hybridization may be to all or part of the instant polynucleotides with the minimum length being sufficient to provide specificity and functionality of their encoded polypeptides.
Low stringency hybridization conditions includes and encompasses from at least about 0 to at least about 15% v/v formamide and from at least about 1 M to at least about 2 M salt for hybridization, and at least about 1 M to at least about 2 M salt for washing conditions. Generally, low stringency is at from about 25-30° C. to about 42° C. The temperature may be altered and higher temperatures used to replace formamide and/or to give alternative stringency conditions.
Medium stringency includes and encompasses from at least about 16% v/v to at least about 30% v/v formamide and from at least about 0.5 M to at least about 0.9 M salt for hybridization, and at least about 0.5 M to at least about 0.9 M salt for washing conditions. High stringency includes and encompasses from at least about 31% v/v to at least about 50% v/v formamide and from at least about 0.01 M to at least about 0.15 M salt for hybridization, and at least about 0.01 M to at least about 0.15 M salt for washing conditions. In general, washing is carried out Tm=69.3+0.41 (G+C %). However, the Tm of a duplex DNA decreases by 1° C. with every increase of 1% in the number of mismatch base pairs (Bonner et al, 1974). Formamide is optional in these hybridization conditions. Accordingly, particularly preferred levels of stringency are defined as follows: low stringency is 6×SSC buffer, 0.1% w/v SDS at 25-42° C.; a moderate stringency is 2×SSC buffer, 0.1% w/v SDS at a temperature in the range 20° C. to 65° C.; high stringency is 0.1×SSC buffer, 0.1% w/v SDS at a temperature of at least 65° C.
The recombinant nucleic acid molecules of the present invention which are suitable for use in making recombinant VLPs may be introduced into vectors to facilitate VLP production.
Vectors, preferably contain cloning sites and are capable of autonomous replication in a defined host cell. Alternatively, the vector may integrate into the genome and replicate together with the chromosome into which it has been introduced. Vectors generally also include selection markers.
Examples of selectable markers include genes conferring resistance to compounds such as antibiotics, genes conferring the ability to grow on selected substrates, genes encoding proteins that produce detectable signals such as luminescence. A wide variety of such markers are known and available, including, for example, antibiotic resistance genes such as the neomycin resistance gene (neo) and the hygromycin resistance gene (hyg). Selectable markers also include genes conferring the ability to grow on certain media substrates such as the tk gene (thymidine kinase) or the hprt gene (hypoxanthine phosphoribosyltransferase) which confer the ability to grow on HAT medium (hypoxanthine, aminopterin and thymidine); and the bacterial gpt gene (guanine/xanthine phosphoribosyltransferase) which allows growth on MAX medium (mycophenolic acid, adenine and xanthine). Other selectable markers for use in mammalian cells and plasmids carrying a variety of selectable markers are described in Sambrook et al., Molecular Cloning—A Laboratory Manual, Cold Spring Harbour, N.Y., USA, 1990.
The selectable marker may depend on its own promoter for expression and the marker gene may not necessarily be derived from human genomes (e.g. prokaryotic marker genes may be used in human cells). However, it is preferable to replace the original promoter with transcriptional machinery known to function in the recipient cells. A large number of transcriptional initiation regions are available for such purposes including, for example, metallothionein promoters, thymidine kinase promoters, β-actin promoters, immunoglobulin promoters, SV40 promoters and human cytomegalovirus promoters. A widely used example is the pSV2-neo plasmid which has the bacterial neomycin phosphotransferase gene under control of the SV40 early promoter and confers in mammalian cells resistance to G418 (an antibiotic related to neomycin). A number of other variations may be employed to enhance expression of the selectable markers in animal cells, such as the addition of a poly(A) sequence and the addition of synthetic translation initiation sequences. Both constitutive and inducible promoters may be used.
The recombinant nucleic acid molecule for use in making a recombinant VLP are preferably in kit form to facilitate introduction of a nucleic acid molecule encoding a POI and particle assembly.
Another aspect of the present invention provides an expression vector comprising a sequence of nucleotides encoding a POI and at least a particle-associating portion of an L polypeptide of DHBV or a functional derivative or homolog thereof wherein said POI is capable of being expressed as a fusion polypeptide with said L polypeptide.
Another aspect of the present invention provides an expression vector comprising a sequence of nucleotides encoding a POI and at least a part of the S domain of an L polypeptide of DHBV or a functional derivative or homolog thereof wherein the POI is expressed within or at a location N terminal to the S-domain of the L polypeptide amino acid sequence or functional derivative of homolog thereof.
Preferably, the POI is expressed N terminally of the S domain of L polypeptide or within the pre-S domain of L polypeptide.
As will be understood by those skilled in the art, the nucleic acid molecules of the present invention may be further modified to ensure their suitability for expression in a range of cells, selection in vitro, suitability for cloning various POIs therein. Such techniques and strategies are well known to those skilled in the art and may be conveniently referred to in Ausbel et al, Eds short protocols in Molecular Biology, John Wiley and Sons, 5th Edition, 2002 and/or Sambrook et al, supra.
To ensure expression, the nucleotide sequences encoding the POI and the L polypeptide components are operatively linked to one or more expression control sequences. Preferably the two or more such nucleotide sequences are in the same reading frame.
In one embodiment expression vectors are conveniently stably integrated into the genome of host cells and expression is driven by host cell promoters.
The present invention also extends to microorganisms or host cells transformed or transfected or otherwise comprising a nucleic acid molecules comprising a sequence of nucleotides encoding a POI and at least a particle-associating portion of an L polypeptide of DHBV or a functional derivative or homolog thereof. Yeast cells are particularly convenient host cells. Prokaryotic or eukaryotic host cells are advantageously used. Typically prokaryotic cells include E. coli, Bacillis sp and eukaryotic cells include yeast, fungi, mammalian and insect cells.
The present invention furthermore provides a composition comprising a virus-like particle derived from DHBV L and S polypeptide for use as a vaccine wherein the L polypeptide comprises one or more antigens of interest.
The present invention also relates to a vaccine comprising an antigen of interest expressed as a fusion protein with a particle-associating L polypeptide of DHBV or a functional derivative or homolog thereof, and an S polypeptide of DHBV wherein the S polypeptide and antigen-L polypeptide are assembled into a VLP, in admixture with a suitable pharmaceutically acceptable diluent or carrier. The vaccine may be lyophilized prior to use and may furthermore be admixed with suitable adjuvants. Accordingly the vaccine may be in kit form.
By “pharmaceutically acceptable” carrier, or diluent is meant a pharmaceutical vehicle comprised of a material that is not biologically or otherwise undesirable, i.e. the material may be administered to a subject along with the selected active agent without causing any or a substantial adverse reaction. Carriers may include excipients and other additives such as diluents, detergents, coloring agents, wetting or emusifying agents, pH buffering agents, preservatives, and the like.
The VLPs, and polypeptide nucleic acid molecules of the present invention can be formulated in pharmaceutical compositions which are prepared according to conventional pharmaceutical compounding techniques. See, for example, Remington's Pharmaceutical Sciences, 18th Ed. (1990, Mack Publishing, Company, Easton, Pa., U.S.A.). The composition may contain the active agent or pharmaceutically acceptable salts of the active agent. These compositions may comprise, in addition to one of the active substances, a pharmaceutically acceptable excipient, carrier, buffer, stabilizer or other materials well known in the art. Such materials should be non-toxic and should not interfere with the efficacy of the active ingredient. The carrier may take a wide variety of forms depending on the form of preparation desired for administration, e.g. topical, intravenous, oral, intrathecal, epineural or parenteral.
For oral administration, the compounds can be formulated into solid or liquid preparations such as capsules, pills, tablets, lozenges, powders, suspensions or emulsions. In preparing the compositions in oral dosage form, any of the usual pharmaceutical media may be employed, such as, for example, water, glycols, oils, alcohols, flavoring agents, preservatives, coloring agents, suspending agents, and the like in the case of oral liquid preparations (such as, for example, suspensions, elixirs and solutions); or carriers such as starches, sugars, diluents, granulating agents, lubricants, binders, disintegrating agents and the like in the case of oral solid preparations (such as, for example, powders, capsules and tablets). Because of their ease in administration, tablets and capsules represent the most advantageous oral dosage unit form, in which case solid pharmaceutical carriers are obviously employed. If desired, tablets may be sugar-coated or enteric-coated by standard techniques. The active agent can be encapsulated to make it stable to passage through the gastrointestinal tract while at the same time allowing for passage across the blood brain barrier. See for example, International Patent Publication No. WO 96/11698.
For parenteral administration, the compound may be dissolved in a pharmaceutical carrier and administered as either a solution of a suspension. Illustrative of suitable carriers are water, saline, dextrose solutions, fructose solutions, ethanol, or oils of animal, vegetative or synthetic origin. The carrier may also contain other ingredients, for example, preservatives, suspending agents, solubilizing agents, buffers and the like. When the compounds are being administered intrathecally, they may also be dissolved in cerebrospinal fluid.
The active agent is preferably administered in a therapeutically effective amount. The actual amount administered and the rate and time-course of administration will depend on the nature and severity of the condition being treated. Prescription of treatment, e.g. decisions on dosage, timing, etc. is within the responsibility of general practitioners or specialists and typically takes account of the disorder to be treated, the condition of the individual patient, the site of delivery, the method of administration and other factors known to practitioners. Examples of techniques and protocols can be found in Remington's Pharmaceutical Sciences, supra.
Alternatively, targeting therapies may be used to deliver the active agent more specifically to certain types of cell, by the use of targeting systems such as antibodies or cell specific ligands or specific nucleic acid molecules. Targeting may be desirable for a variety of reasons, e.g. if the agent is self-antigenic or if it would not otherwise be able to enter the target cells.
Instead of administering these agents directly, they could be produced in the target cell, e.g. in a viral vector such as described below or in a cell based delivery system such as described in U.S. Pat. No. 5,550,050 and International Patent Publication Nos. WO 92/19195, WO 94/25503, WO 95/01203, WO 95/05452, WO 96/02286, WO 96/02646, WO 96/40871, WO 96/40959 and WO 97/12635. The vector could be targeted to the target cells. The cell based delivery system is designed to be implanted in a patient's body at the desired target site and contains a coding sequence for the target agent. Alternatively, the agent could be administered in a precursor form for conversion to the active form by an activating agent produced in, or targeted to, the cells to be treated. See, for example, European Patent Application No. 0 425 731A and International Patent Publication No. WO 90/07936.
Vaccine composition may alternatively comprise nucleic acid molecules encoding the recombinant VLPs.
Gene transfer systems known in the art may be useful in the practice of genetic manipulation. These include viral and non-viral transfer methods. A number of viruses have been used as gene transfer vectors or as the basis for preparing gene transfer vectors, including papovaviruses (e.g. SV40, Madzak et al., J. Gen. Virol. 73: 1533-1536, 1992), adenovirus (Berkner, Curr. Top. Microbiol. Immunol. 158: 39-66, 1992; Berkner et al., BioTechniques 6, 616-629, 1988; Gorziglia and Kapikian, J. Virol. 66: 4407-4412, 1992; Quantin et al., Proc. Natl. Acad. Sci. USA 89: 2581-2584, 1992; Rosenfeld et al., Cell 68: 143-155, 1992; Wilkinson et al., Nucleic Acids Res. 20: 2233-2239, 1992; Stratford-Perricaudet et al., Hum. Gene Ther. 1: 241-256, 1990; Schneider et al., Nature Genetics 18: 180-183, 1998), vaccinia virus (Moss, Cur. Top. Microbiol. Immunol. 158: 25-38, 1992; Moss, Proc. Natl. Acad. Sci. USA 93: 11341-11348, 1996), adeno-associated virus (Muzyczka, Curr. Top. Microbiol. Immunol. 158: 97-129, 1992; Ohi et al., Gene 89: 279-282, 1990; Russell and Hirata, Nature Genetics 18: 323-328, 1998), herpesviruses including HSV and EBV (Margolskee, Curr. Top., Microbiol. Immunol. 158: 67-95, 1992; Johnson et al., J. Virol. 66: 2952-2965, 1992; Fink et al., Hum. Gene Ther. 3: 11-19, 1992; Breakefield and Geller, Mol. Neurobiol. 1. 339-371, 1987; Freese et al., Biochem. Pharmacol. 40: 2189-2199, 1990; Fink et al., Ann. Rev. Neurosci. 19: 265-287, 1996), lentiviruses (Naldini et al, Science 272: 263-267, 1996), Sindbis and Semliki Forest virus (Berglund et al., Biotechnology 11: 916-920, 1993) and retroviruses of avian (Bandyopadhyay and Temin, Mol. Cell. Biol. 4: 749-754, 1984; Petropoulos et al., J. Viol. 66: 3391-3397, 1992], murine [Miller, Curr. Top. Microbiol. Immunol. 158: 1-24, 1992; Miller et al., Mol. Cell. Biol. 5: 431-437, 1985; Sorge et al., Mol. Cell. Biol. 4: 1730-1737, 1984; Mann and Baltimore, J. Virol. 54: 401-407, 1985; Miller et al., J. Virol. 62: 4337-4345, 1988] and human [Shimada et al., J. Clin. Invest. 88. 1043-1047, 1991; Helseth et al., J. Virol. 64: 2416-2420, 1990; Page et al., J. Virol. 64: 5270-5276, 1990; Buchschacher and Panganiban, J. Virol. 66: 2731-2739, 1982] origin.
Non-viral gene transfer methods are known in the art such as chemical techniques including calcium phosphate co-precipitation, mechanical techniques, for example, microinjection, membrane fusion-mediated transfer via liposomes and direct DNA uptake and receptor-mediated DNA transfer. Viral-mediated gene transfer can be combined with direct in vivo gene transfer using liposome delivery, allowing one to direct the viralvectors to particular cells. Alternatively, the retroviral vector producer cell line can be injected into particular tissue. Injection of producer cells would then provide a continuous source of vector particles.
In an approach which combines biological and physical gene transfer methods, plasmid DNA of any size is combined with a polylysine-conjugated antibody specific to the adenovirus hexon protein and the resulting complex is bound to an adenovirus vector. The trimolecular complex is then used to infect cells. The adenovirus vector permits efficient binding, internalization and degradation of the endosome before the coupled DNA is damaged. For other techniques for the delivery of adenovirus based vectors, see U.S. Pat. No. 5,691,198.
Liposome/DNA complexes have been shown to be capable of mediating direct in vivo gene transfer. While in standard liposome preparations the gene transfer process is non-specific, localized in vivo uptake and expression have been reported in tumor deposits, for example, following direct in situ administration.
General methods for generating the viral particles of the present invention are well known to skilled practitioners.
The present invention provides a method of preparing a recombinant VLP said method comprising:
Yeast cells, for example, will be transformed with L/POI and S expression plasmids. Preferably, expression is driven by a yeast promoter and expressed in yeast cells, such as a strain of Saccharomyces.
Another aspect of the present invention is directed to antibodies to the fusion polypeptides of the present invention. Antibodies may be monoclonal or polyclonal and technique for their manufacture are very well known. Antibodies which specifically recognise determinants of the fusion polypeptide of the present invention are particularly preferred.
The present invention is further described by the further non-limiting Examples.
Plasmid pCDL-E2.465 encodesa chimeric L protein consisting (from N to the C terminus) of DHBV L aa 1-4; HCV E2 aa 384 to 465; DHBV L aa 126 to 328. This represents an insertion of a protein of interest of 82 amino acids. Fusion PCR (overlap extension PCR) was used as described by Ho et al, Gene, 77:51, 1989. Overlapping primers were each paired with an outside primer complementary to the plus strand of pCDL-w.t. or the minus strand of HCV construct in 2 first round PCR reactions using pfu enzyme. The PCR products (153 bp from pCDL as template and 272 bp with the HCV template) from each reaction were purified using a Qiagen min elute kit and the two purified products used as the template for the fusion PCR reaction using the outside primers. The 578 bp fusion PCR product was purified and digested with Xma1, cutting at nt 1743 of the HCV primer sequence and with Aat II, cutting at nt 831 of DHBV L. The plasmid, pMDL-w.t., carrying unique Xma1 and Aat II sites in the DHBV preS coding sequence was used as vector. The digested PCR fragment and the large fragment of the cut vector were excised from an agarose gel and purified using a Prep-a-gene kit (Bio-Rad). Competent cells (DH5α cells) were transformed with the ligated plasmid and transformants selected from ampicillin plates.
Positive clones were detected by restriction enzyme digestion of purified DNA using a restriction site which is also present in the HCV E2 ectodomain sequence (Bsa1).
A Sal1/Xho 1 fragment of pMDL-E2 containing the E2 insert was subcloned into pCDL-w.t. (DHBV L expression plasmid with CMV promotor) using the same unique restriction sites (see
The avian hepatoma cell line, LMH was co-transfected with 5 μg each of pCDL-E2.465 and pCI-S (Gazina et al, Virology 242:266, 1998) using the dextran sulphate method (Grgacic et al, J. Gen. Virol. 79:2743, 1998). Day 3 post-transfection media were collected for assessment of exported particles and cells either processed for cytosolic fractionation and assessment of intracellular particle formation or isolation of microsomes for protease protection analysis or isolation of the membrane fraction for assessment of protein expression (Grgacic, J. Gen. Virol. 83:1635, 2002).
Particles in the clarified media or cytosol fraction were diluted to 6 ml with PBS and pelleted for 3 h at 38,000 rpm in an SW40 rotor (Beckman) through 3 ml of 20% sucrose onto a 2 ml 70% sucrose cushion. The fraction at the 20-70% interface was collected from the bottom, methanol precipitated for 16 h at −20° C. followed by separation on 13% SDS-PAGE and Western blotting.
As shown in
Microsomes were prepared according to the method of Prange and Streeck, EMBO J. 14:247, 1995 with modifications. Transfected LMH cells (two 30 mm diameter wells) were washed in cold Tris-buffered saline (TBS: 50 mM Tris-HCl, pH 7.5; 150 mM NaCl).
The monolayers in each well were incubated on ice with 0.4 ml 0.1× TBS for 10 minutes and then harvested by scraping, pooled and dispersed by drawing 5 times through a 26G needle. The homogenate was adjusted to 1× TBS with 5× TBS and centrifuged for 20 min at 2,500 rpm at 4° C. to remove unbroken cells and nuclei. The supernatant was removed and set aside while the pellet was again dispersed in 300 μl TBS and centrifuged as before.
Supernatants were pooled and layered onto 2.7 ml 250 mM sucrose in TBS and centrifuged for 30 min. at 38,000 rpm at 4° C. in an SW-60 rotor (Beckman). The microsomal pellets were washed once with TBS and resuspended in 65 μl TBS.
For trypsin protection analysis the microsomal preparation was divided into three 20 μl aliquots. One sample was left untreated while the remaining two were treated with 25 μg/ml of trypsin (TPCK treated; Worthington Biochem. Corp. NJ. USA) with or without 0.5% NP-40 for 1 h. on ice.
Proteins were separated by SDS-PAGE (13% acrylamide) and transferred to nitrocellulose membrane(Schleicher and Schüll) using a Trans-Blot SD semi-dry transfer cell (Biorad). Membranes were blocked for 1 h with 3% skim milk in PBS plus 0.3% Tween 20 (PBST). Membranes were probed with monoclonal anti-S (7C.12) (Pugh et al, J. Virol. 69:4814, 1995) for 1 h in 1% skim milk; PBST, then washed with PBST and probed with goat anti-mouse Ig:horse radish peroxidase (Amersham) in 1% skim milk PBST. After a final wash in PBST (3×10 min.) proteins bands were visualised by enhanced chemiluminescence (ECL) (Amersham).
As shown in
The receptor binding region as well as the C terminus of preS is exposed to the DHBV subviral particle surface. These exposed regions, flanked by the membrane spanning S domain, are believed to be further stabilised through anchorage at the N terminus by the myristylation signal. The HCV E2 ectodomain inserted into this region of preS was similarly exposed and stabilised. PreS sequences are substituted by equivalent or larger sized foreign sequences or alternatively fused in frame to the N terminus of the S domain of L by fusion PCR.
To aid translocation of the chimeric L polypeptides, an L construct with a signal sequence such as the preprolactin signal sequence fused to the N terminus, which causes co-translational translocation of L, is also used. These SigL chains can assemble with S subunits and be exported as particles. Translocation of the chimeric preS domains is monitored by the protease protection assay and antibody mapping of the topology on the assembled particle by immunoprecipitation. Particles are purified by sucrose gradient sedimentation and analysed by EM/immunogold labelling for VLP formation. Pulse-chase metabolic labelling are performed to assess that the proportion of recombinant chains relative to S (approximately 1:4 for wild type DHBV) is maintained in the assembled particle.
pCDLΔTM1-E2.465 encodes a chimeric L protein consisting (from the N to the C terminus) of DHBV L a.a. 1-45; HCV E2 a.a. 384-465; DHBV L a.a.126-328 with a deletion of 18 a.a. of transmembrane domain 1 at a.a.168-186 (see
pCDLΔTM1-E2.465 was constructed by subcloning a Sal 1/BstEII fragment (encompassing preS/E2 and S domain sequences) of pMDLΔTM1-E2.465 into pCDL-w.t. Transfer of the insert was confirmed by restriction enzyme digestion with Bsa 1. Expression and analysis of pCDLΔTM1-E2.465 was done in LMH cells as described in Examples 2, 3 and 4. Expression of the E2;465/LΔTM1 chimera both as protein and as assembled particles, was greater than that observed with the pCDL-E2.465 plasmid. Constructs with the TM1 deletion can be used for all chimeric DHBV VLPs, if required.
pSigLΔTM1-E2.465 encodes a chimeric L protein consisting (from the N to the C terminus) Preprolactin signal sequence a.a.1-26; DHBV L a.a. 2-45; HCV E2 a.a. 384-465; DHBV L a.a.126-328 with a deletion of 18 a.a. of transmembrane domain 1 at a.a.168-186 (see
Signal sequences fused to the N terminus of DHBV L cause the L protein to be co-translationally translocated across the ER membrane which in turn results in glycosylation of the L protein (Swaymeye and Schaller, J. Virol., 71:9434, 1997; Gazina et al, (supra)).
Firstly, pCDSigLΔTM1-E2.465 was constructed by sequential subcloning, first of an AatII/Kpn 1 fragment of pMDLΔTM1-E2.465 into pMDSigLΔTM1-E2.465 and then a Sal 1/BstEII fragment of the latter into pCDSig{tilde over (L)}A PpuMul/BstEII fragment from pCDSigLΔTM1-E2.465 containing the E2.465 sequences was subcloned into the same sites in PPL-L, encoding the preprolactin signal sequence at the N terminus of DHBV L (Gazina et al, (supra)). The resulting plasmid was assigned the name, pSigLΔTM1-E2.465. pSigLΔTM1-E2.465 expressed the chimeric L-E2.465 protein at similar levels to the PPL-L protein when examined as in Example 2.
pSigLΔTM1-E2.661 encodes a chimeric L protein consisting (from the N to the C terminus) Preprolactin signal sequence a.a.1-26; DHBV L a.a. 2-45; HCV E2 a.a. 384-661; DHBV L a.a.168-328 (see
The E2.661/L chimera incorporates a.a. 384-661 of HCV E2, i.e., the 278 amino acid ectodomain of E2 into the preS domain of DHBV L. The E2.661/L was constructed by PCR using a primer to the sequence at the start site if HCV E2 (nt 1490) and reverse primer covering nt 2321 at the end of the ectodomain of E2 and incorporating a Kpn 1 restriction enzyme site. The PCR product was digested with Nae 1 (nt 1517 of E2) and Kpn 1 and inserted into the same sites in pCDLΔTM1-E2.465 to create pCDLΔTM1-E2.661. Incorporation of the PPL signal sequence to this construct was done by a three-way ligation of the following fragments: a Nar1/BstE II fragment of pCDLΔTM1-E2.661 encompassing the E2 sequence; a Bgl II/Nar 1 fragment of the pSigLΔTM1-E2.465 encompassing the preprolactin sequence and part of E2 and a Bgl II/BstE II fragment of PPL-L providing the remaining vector sequences. Expression of the resulting construct pSigLΔTM1-E2.661 was shown in LMH cells as described in Example 2 (see
pCDL-HBVpreS encodes a chimeric L protein consisting (from the N to the C terminus) of HBV preS a.a. 1-163; DHBV L a.a.162 -328. pCDLΔ-HBVpreS encodes a chimeric L protein consisting (from the N to the C terminus) of HBV preS a.a. 1-163; DHBV L a.a.162 -328 with a deletion of 18 a.a. of transmembrane domain 1 at a.a.168-186 (see
Genome sequences encoding the preS domain (a.a.1-163) of HBV (strain ayw) and the S domain of DHBV were amplified by PCR from plasmids encoding the respective L proteins, then joined by fusion PCR. The HBV preS primer introduced a Sal 1 restriction site upstream of the initiation of HBV preS. The fusion PCR product was digested using Sal 1 and a BstEII restriction site in the DHBV sequence upstream of the DHBV primer and ligated into the same sites in pCDL-w.t. to create the pCDL-HBVpreS plasmid. The HBV preS sequence, which has no sequence homology with the DHBV preS (Sprengel et al, J. Med. Virol., 15:323, 1985), is thus directly fused to the S domain of DHBV L in these constructs.
pCDLΔ-HBVpreS was constructed by a three-way ligation of the following fragments: a Sal1/Kpn1 fragment of pCDL-HBVpreS encompassing the HBV preS sequence, a Kpn1/BstEII fragment of pCDLΔTM1 encompassing the DTM1 region and a Sal 1/BstEII fragment of pCDL-w.t. providing the remaining vector sequences.
Expression and analysis of pCDL-HBVpreS and pCDLΔ-HBVpreS was done in LMH cells as described in Examples 2, 3 and 4.
pCDLΔTM1-MSP2 encodes a chimeric L protein consisting (from the N to the C terminus) of DHBV L a.a.1-30; P. falciparum MSP2 a.a. 20-249; DHBV L a.a.126-328 with a deletion of 18 a.a. of transmembrane domain 1 at a.a.168-186 (see
The malaria pathogen, Plasmodium falciparum (isolate NF54 clone 3D7) MSP2 gene was cloned by fusion PCR. Two sets of primers were used for generating separate templates for fusion. The first set encompassed a forward primer incorporating the SalI restriction enzyme site of pCDLΔTM1 and a reverse primer overlapping the first 27 bp of MSP2 and the second set consisted of a forward primer overlapping DHBV L and a reverse primer incorporating a XmaI restriction enzyme site into MSP2. The separate templates were then joined by fusion PCR, restricted by SalI and XmaI and ligated into the vector. The ligated insert-vector was transformed into E. coli DH5 alpha, creating the chimeric vector pCDL ΔTM1-MSP2. Expression of the resulting construct was shown in LMH cells as described in Example 2 (see
For the purposes of scaling-up production of recombinant DHBV VLPs and chimeric DHBV VLPs for immunisation studies, a yeast inducible expression system was used. DHBV DNA encoding the large envelope protein was cloned into the pYES2 vector (Invitrogen) by PCR using a primer to the sequence upstream (starting at nt 762) of the start site of DHBV L (nt 801) and incorporating a Sac 1 restriction enzyme site and a reverse primer covering nucleotide 1910 and incorporating an Eco R1 restriction site. The PCR product was digested and inserted into the Sac1 and EcoR1 sites in the multicloning site of the vector. The pYES2 vector carries an ampicillin resistance gene for selection of clones in E. coli. Clones containing the DHBV L gene (pYES-DL) were confirmed by restriction enzyme digestion and one was selected for transformation of the yeast strain, INVSc1.
A yeast expression plasmid for DHBV S gene expression, pMB-DS (Klingmüller and Schaller, J. Virology, 67:7414, 1993), was used for co-transformation of the NVSc1 strain with pYES-DL. The pYES2 vector carries a URA3 gene for selection of transformants in yeast and pMB-DS carries a LEU2 selection marker. The INVSC-1 stain used will not grow in media deficient in leucine, uracil, histidine and tryptophan. Co-transformants were therefore selected for growth on media lacking both leucine and uracil. Transformation of competent INVSc-1 cells was done according to the manufacturer's (INVITROGEN) instructions. Both plasmids have a GAL1 promoter for high level inducible protein expression in yeast by galactose and repression by glucose. Transformants were grown in yeast synthetic drop-out media without uracil and leucine (SC-UL) with 2% glucose for 2 days and then induced for protein expression by the substitution of glucose with 2% galactose and grown in YEP (1% yeast extract; 2% peptone) media for a further 24-48 hours.
DHBV L and S protein expression was examined by Western blotting following extraction of protein in yeast cells with acid-washed glass beads and vigorous vortexing followed by centrifugation. Supernatants were analysed by Western blotting with anti-S monoclonal as described in Example 5. Transformants (DL/S), which expressed the greatest amount of L and S protein were selected and stored as glycerol stocks.
For analysis of DHBV VLP production: A 50 ml yeast culture of DL/S was extracted and the supernatant loaded onto 20% sucrose above a 70% sucrose cushion and centrifuged at 38,000 rpm for 3 hours in a SW41 rotor (Beckman). The fraction at the 20-70% interface was then loaded onto a 20-70% sucrose step gradient and centrifuge for 5 hours at 38,000 rpm (Grgacic and Schaller, J. Virol., 74:5116, 2000). Fractions were collected from the bottom of the gradient and analysed by Western blotting. Serum-derived DHBV subviral particles sediment at approximately 30% sucrose (peak fractions 7 and 8). The yeast-derived DHBV VLPs were similarly shown to sediment largely at 30% sucrose (see
Transmission Electron Microscopy (TEM) of yeast-derived particles was conducted by the Monash Micro Imaging Facility. Particles for TEM were sucrose gradient purified and further buffer exchanged with phosphate buffered saline using a Vivaspin 20 desalting and concentration device (Vivascience) prior to negative staining with uranyl acetate. A comparison of TEM of serum-derived DHBV subviral particles and yeast-derived DL/S particles showed similar particle morphology and size (approx 40-60 nm).
Variations on the pYES-DL construct to include the deletion in transmembrane domain 1 and the preprolactin Signal sequence with and without the deletion in transmembrane domain 1 were made. pYES-DLΔTM1 was constructed by subcloning an Aat II/Bst EII fragment of pMDLΔTM1 containing the region of the TM1 deletion into pYES-DL using the same restriction enzyme sites. pYES-SigL was constructed by subcloning a Sac 1/Bst EII fragment of PPL-L containing the signal sequence into pYES-DL using the same restriction sites. pYESSigLΔTM1 was constructed by subcloning an Aat II/BST Eii fragment of pMDLΔTM1 containing the TM1 deleted region into pYES-SigL using the same restriction sites. VLP production and analysis in yeast was done as described above. DLΔTM1/S, SigL/S and SigLΔTM1/S VLPs were shown to have the same sedimentation profile as DL/S particles in a sucrose step gradient.
pYES-DL-E2.465 and pYES-DLΔTM1-E2.465 were constructed by subcloning E2 encompassing sequences from pMDLΔTM1-E2.465 in an Aat II/Xma1 fragment for the former and an Aat II/Bst EII fragment for the latter into the same sites in pYES-DL. INVSc-1 cell were co-transformed with either pYES-DL-E2.465 and pMB-DS or pYES-DLΔTM1-E2.465 and pMB-DS for chimeric particle production and analysis in yeast as described in Example 11. The DLΔTM1-E2.465 VLPs were shown to have the same sedimentation profile as DL/S particles in a sucrose step gradient (see
pYES-DLΔTM1-HpreS was constructed by PCR using a primer to the sequence upstream (starting at nt 4091) of the start site of HBV preS (nt 4138) and incorporating a Sac 1 restriction enzyme site and a reverse primer covering nucleotide 1910 of the DHBV sequence and incorporating an Eco R1 restriction site. The PCR product was digested and inserted into the Sac1 and EcoR1 sites in the multicloning site of the PYES vector. Chimeric particle production and analysis in yeast was done as described in Example 11. DLΔTM1-HpreS VLPs were shown to have the same sedimentation profile as DL/S particles in a sucrose step gradient (see
DL/S VLPs were used to immunize rats. DL/S VLP production: A 100 ml yeast culture of DL/S was extracted and the supernatant loaded onto two 20% sucrose above a 70% sucrose cushion and centrifuged at 38,000 rpm for 3 hours in a SW41 rotor (Beckman). The portion of the pelleted VLPs was examined by SDS-PAGE and Coomassie Brilliant Blue protein staining against a standard protein to estimate the amount of VLP protein. Approximately 10 μg doses of DL/S in a total of 200 μl were injected in rats i.m. Rats were put into three groups of six rats with each group receiving DL/S VLPs either without the addition of an adjuvant or with the addition of alum or Titremax. Rats were bled 3 weeks following immunisation and subsequent boosts. Analysis of rat sera by Western blotting of DHBV L/S protein showed a strong and rapid immunoreactivty without the presence of adjuvant to the DHBV L protein with little or no response to DHBV S protein (see
Those skilled in the art will appreciate that the invention described herein is susceptible to variations and modifications other than those specifically described. It is to be understood that the invention includes all such variations and modifications. The invention also includes all of the steps, features, compositions and compounds referred to or indicated in this specification, individually or collectively, and any and all combinations of any two or more of said steps or features.
| Number | Date | Country | Kind |
|---|---|---|---|
| 2003901876 | Apr 2003 | AU | national |
| Filing Document | Filing Date | Country | Kind | 371c Date |
|---|---|---|---|---|
| PCT/AU2004/000511 | 4/16/2004 | WO | 00 | 10/18/2006 |
| Publishing Document | Publishing Date | Country | Kind |
|---|---|---|---|
| WO2004/092387 | 10/28/2004 | WO | A |
| Number | Name | Date | Kind |
|---|---|---|---|
| 20040001853 | George et al. | Jan 2004 | A1 |
| Number | Date | Country |
|---|---|---|
| WO 0210416 | Feb 2002 | WO |
| Number | Date | Country | |
|---|---|---|---|
| 20070099262 A1 | May 2007 | US |
