Patent Application
20230278076
This application claims the priority benefit under 35 U.S.C. § 119 to German Patent Application No. 20 2022 101211.3, filed on Mar. 4, 2022, which application is hereby incorporated herein by references in its entirety.
The present invention relates to washing an element in a chromatography system. For example, the element to be washed may be a trap column, but the present invention also pertains to other elements.
Trap column carryover is a challenge to get confident results in each injection, e.g., in the field of proteomics. The root cause is 1) sample type; 2) sample overloading; 3) insufficient column washing; 4) unspecific sample binding; 5) column chemistry, etc. To effectively reduce and/or remove the column carryover, users typically run blank (which significantly sacrifices the sample throughput) or manually program the washing procedure based on knowledge of the LC fluidic setup (which is difficult and time-consuming). That is, to reduce column carryover, users may presently use one of the following. A first option is to run a blank following the sample, which significantly sacrifices the sample throughput and increases the effort/sample. Another option is to program the washing procedure manually for each particular method. It is difficult and time-consuming because it requires users to embrace their knowledge of the LC fluidic setup.
Furthermore, it is also known to use disposable single use trap columns. Such disposable trap columns are known as Evotip and are marketed by Evosep ApS, 5000 Odense C, Denmark. The trap columns are solid phase extraction (SPE) trap columns and are discarded for each injection. However, such a solution is related to a high effort and is environmentally unfriendly.
It is an object of the present invention to overcome or at least alleviate the shortcomings and disadvantages of the prior art. In particular, it is an object of the present invention to provide an improved washing method for elements in a chromatography system.
These objects are met by the present invention.
The present invention relates to a method of washing an element in a chromatography system, wherein the method comprises performing an element rinse step, wherein the element rinse step comprises: providing a first washing liquid with a first composition towards the element, and providing a second washing liquid with a second composition towards the element, wherein the second composition is different from the first composition.
That is, the present invention relates to a washing procedure of an element, e.g., a trap column. The washing procedure includes an element rinse step, where different washing liquids, e.g., different plugs of separated washing liquids, are provided to the element.
Providing such a washing procedure with different washing liquids may be superior to providing a washing procedure employing only a single washing liquid.
For example, the present invention may allow a fully automatic, optimized, and easy-to-use solution to remove trap column carryover while maintaining sample throughput and data confidence.
The first composition may comprise at least 70%, preferably at least 80%, further preferably at least 90% of a first solvent, and further preferably may the first composition consist of the first solvent, and the second composition may comprise at most 30%, preferably at most 20%, further preferably at most 10% of the first solvent, and further preferably may the second composition be free of the first solvent.
It should be understood that % in this document generally refers to volume %.
The method may further comprise performing a washing liquid pick up routine, wherein the washing liquid pick up routine comprises at least one washing liquid pick up cycle, wherein each washing liquid pick up cycle comprises: picking up the first washing liquid into a liquid storage section of the chromatography system and picking up the second washing liquid into a liquid storage section of the chromatography system.
Thus, the washing liquids may be picked up separately and stored separately, i.e., as defined liquid plugs. They may thus also be provided to the element to be washed, e.g., the trap column, as such liquids plugs, which may yield superior results.
The system may comprise a pick up needle and a wash port, wherein the pick up needle is located in the wash port throughout the washing liquid pick up routine.
However, it should be understood that it is also possible that the needle picks up at least one of the washing liquids from a vial.
The first washing liquid and the second washing liquid may be provided towards the element as defined liquid plugs.
The element rinse step may comprise providing a third washing liquid with a third composition towards the element, wherein the third composition is different from the first composition and from the second composition.
The washing liquid pick up routine may comprise a plurality of washing liquid pick up cycles, two, three, four, or more than 10 washing liquid pick up cycles, performed one after another.
Performing such a plurality of cycles, and thus providing a plurality of liquid plugs to and through the element for washing may provide good washing results.
The method may comprise receiving a user input relating to the number of washing liquid pick up cycles to be performed and performing the washing liquid pick up cycles.
The method may comprise receiving a user input relating to a pick up volume of the first washing liquid and/or a pick up volume of the second washing liquid, and in the step of picking up the first washing liquid and/or in the step of picking up the second washing liquid, the first and/or second washing liquid may be picked up according to the user input.
The element may comprise a trap column.
The trap column may not be fluidly connected to a separation column throughout performing the element rinse step.
Each washing liquid pick up cycle may comprise picking up the third washing liquid into a liquid storage section of the chromatography system.
In some embodiments, the element may comprise a separation column.
Throughout the element rinse step, a flow rate towards the element may be kept within a range of 10% of a maximum flow rate in the element rinse step, preferably within in a range of 5% of the maximum flow rate in the element rinse step, further preferably within a range of 2% of the maximum flow rate in the element rinse step.
A pressure in the element may be in the range of 50 bar to 1,000 bar during the element rinse step.
The element rinse step may have a duration in the range of 1 s to 4,000 s, preferably 10 s to 1,000 s, further preferably 30 s to 100 s.
In the element rinse step, a total volume in the range of 0.1 μl to 300 μl, preferably 1 μl to 100 μl may be provided through the element.
The first composition and the second composition each may comprise at least one of the following: acetonitrile, methanol, isopropanol, water, tetrahydrofuran, and dimethyl sulfoxide.
The step of picking up the first washing liquid may have a first step duration in the range of 0.1 s to 50 s, preferably 0.2 s to 10 s, further preferably 0.5 s to 4 s.
The step of picking up the second washing liquid may have a second step duration in the range of 0.1 s to 50 s, preferably 0.2 s to 10 s, further preferably 0.5 s to 4 s.
In the step of picking up the first washing liquid, a first volume in the range of 0.2 μl to 100 μl, preferably 1 μl to 80 μl may be picked up.
In the step of picking up the second washing liquid, a second volume in the range of 0.2 μl to 100 μl, preferably 1 μl to 80 μl may be picked up.
The chromatography system may comprise a loading pump.
The washing pick up routine may have a pick up duration in the range of 2 s to 60 s, preferably 3 s to 30 s, further preferably 5 s to 25 s.
The method may further comprise a liquid drain step performed directly before the washing liquid pick up routine.
The needle may be located in the wash port in the liquid drain step.
The first washing liquid and the second washing liquid may be picked up by means of the loading pump.
The method may comprise a pressurization step, wherein a pressure of the first washing liquid and the second washing liquid is increased, wherein the first washing liquid and the second washing liquid are in a section of the chromatography system not fluidly connected to the element in the pressurization step, wherein the pressurization step may be performed before the element rinse step.
Thus, uncontrolled pressure spikes at the element, e.g., the trap column, may be prevented, which may increase the service life of the element. Further, by preventing such pressure spikes, less longitudinal mixing of the liquids plugs may occur prior to washing the element with the liquids.
In the pressurization step, the pressure of the first liquid and the second liquid may be increased to a pressure within 100 bar of the pressure of the element.
In the pressurization step, the pressure of the first liquid and the second liquid may be increased by at least 50 bar, preferably by at least 100 bar, such as by at least 200 bar. In some embodiments, the pressure of the first liquid and the second liquid may be increased by more than 1,000 bar, e.g., by up to 1,500 bar.
The pressurization step may be performed within 60 s before starting the element rinsing step, preferably within 30 s before starting the element rinsing step, such as within 15 s before starting the element rinsing step.
The loading pump may provide the first washing liquid and the second washing liquid towards the element.
The pressure of the first washing liquid and the second washing liquid may be increased by means of the loading pump in the pressurization step.
The present invention also relates to a chromatography system, wherein the chromatography system comprises a controller, wherein the controller is programmed to cause the system to carry out the described method.
The system may comprise a wash port.
The system may comprise the element.
The element may comprise a trap column.
The element may comprise a separation column.
The system may comprise a loading pump.
The system may comprise an analytical pump.
The system may comprise a sample loop.
The system may comprise a waste reservoir.
The system may comprise a valve system, wherein the valve system comprises at least one rotary valve, and preferably at least two rotary valves for changeably fluidly connecting components of the system.
The system may comprise comprises a needle.
The system may comprise a liquid storage section.
Typically, the liquid storage section may be formed by the needle, by a tubing portion adjacent to the needle, and—depending on the amount of liquid to be stored—by the sample loop.
The system may comprise a needle seat.
The system may be configured to carry out the method according to any of the preceding method embodiments.
The present invention further relates to a computer program comprising instructions which, when the program is executed by a controller in a chromatography system, cause the controller to cause the system to carry out the described method.
It will be understood that the chromatography system may comprise any of the features discussed above.
The present invention also relates to a use of the described chromatography system or the described computer program in genomics, proteomics, metabolomics, metagenomics, and/or transcriptomics.
That is, embodiments of the present invention are particularly applicable for the Omics research field, especially the Proteomics application employing trap-and-elute workflow. Overall, embodiments of the present invention may reduce carryover (e.g., in trap columns) effectively without scarifying sample throughput, and consequently, increase the confidence of each injection.
In simple words, in embodiments of the present invention, alternating strong and weak wash liquid plugs are picked up, e.g., from the wash port and are delivered as solvent plugs onto the trap column for quick washing and equilibration, e.g., under a defined flow rate and/or pressure limit.
As regards the terms strong and weak washing liquids, it will be understood that a weak washing liquid (or solvent) generally increases the retention of the analytes in the stationary phase, and a strong washing liquid (or solvent) decreases the retention of the analytes in the stationary phase. It will thus also be understood that whether a washing liquid is strong or weak is also relative to the stationary phase. For example, in reversed-phase HPLC, weak may refer to an aqueous buffer, e.g. However, e.g., in hydrophilic interaction liquid chromatography, such an aqueous buffer may be a strong solvent.
As regards user interaction, when setting up a trap-and-elute method, users can activate the respective function under a tab of “Wash and Equilibration Settings” in a method editor and then define the details of the method Then the instrument will execute the washing and equilibration procedures (e.g., of a trap column) automatically after the end of the gradient separation step and no other actions may be needed.
Embodiments of the present invention thus provide an automatic workflow to allow the sampler to pick up alternating wash liquids to reduce trap column carryover effectively.
Embodiments of the present invention thus relate to a fully automatic, optimized, and easy-to-use solution to remove trap column carryover while maintaining the sample throughput and enhancing data confidence. The embodiments are easy to use. For example, users can define the washing cycle number from a drop-down menu on an instrument method editor without knowing the fluidic setup of the liquid chromatography system. Moreover, embodiments are accommodated for a large sample loop to achieve more extensive washing (up to 16 cycles with a 100 μL loop). Embodiments of the present invention are also economical and environmentally friendly.
Tests using cytochrome C indicate that embodiments of the present invention with 2 liquid plugs can reduce at least two times carryover of hydrophobic peptides and ten times for hydrophilic peptides.
In particular, the carryover may be determined as follows: A run with a sample is performed. Subsequently, the washing method is performed. In this regard, it will be understood that it may also be possible that at least a part of the washing method, e.g., of a trap column, may be performed in parallel with at least a part of the sample run. More particularly, the trap column may be disconnected from a separation column, and an analytical pump may continue to pump liquid into and through the separation column to finalize the sample run, while the trap column is already disconnected from the separation column and undergoes the washing method. Subsequent to the washing method, a blank run is performed. Then, the intensities of targets in the blank run are divided by the corresponding targets in the sample run. Thus, for different washing routines, carryover levels can be defined and evaluated.
Generally, it will be understood that a method of liquid chromatography may be comprised of a gradient separation phase and a separation column washing step. The presently described washing method may be used for the trap column, e.g., a washing method for a trap column may be executed at the end of the gradient separation phase. Further, a trap column washing can be executed in parallel with the separation column washing step. However, the presently described washing method may also be used for a separation column wash at the end of gradient separation step.
It will be understood that the level of reduction may depend on, e.g., the sample type, sample amount and trap column type. Overall, this workflow can at minimum reduce carryover two fold compared to a washing procedure employing only one wash liquid.
More particularly, tests with human tryptic peptide sample indicate that this function can reduce ca. 4 folds of carryover calculated by total peptide intensities in a trap column using 2 cycles of Zebra Wash by consuming around 1.8 mL of wash liquids in total, and it will be understood that different solvents may be used, e.g., acetonitrile, methanol, isopropanol, water, and/or dimethyl sulfoxide.
The present invention is also defined by the following numbered embodiments.
Below, method embodiments will be discussed. These embodiments are abbreviated by the letter “M” followed by a number. Whenever reference is herein made to method embodiments, these embodiments are meant.
It should be understood that % in this document generally refers to volume %.
However, it should be understood that it is also possible that the needle picks up at least one of the washing liquids from a vial.
Below, system embodiments will be discussed. These embodiments are abbreviated by the letter “S” followed by a number. Whenever reference is herein made to system embodiments, these embodiments are meant.
Typically, the liquid storage section may be formed by the needle, by a tubing portion adjacent to the needle, and—depending on the amount of liquid to be stored—by the sample loop.
It will be understood that the chromatography system may comprise any of the features discussed above.
Embodiments of the present invention will now be described with reference to the accompanying drawings, and it should be understood that the drawings should only illustrate, but not limit, the present invention.
The chromatography system 10 may further comprise: a sample loop 100, a sample pick up means seat 140, a sample pick up means 160, which is shown as a sample pick up needle, an analytical pump 500, a separation column 400, a waste reservoir 700, a first distributor valve 620 comprising a plurality of ports and a plurality of connecting elements configured to changeably connect to the plurality of ports of the first distributor valve 620, wherein the plurality of ports of the first distributor valve 620 comprises a first port 601 directly fluidly connected to the seat 140, a second port 602 and a third port 603 that are both directly fluidly connected to the trap column 300, a fourth port 604 directly fluidly connected to the separation column 400, a fifth port 605 directly fluidly connected to the analytical pump 500, and a sixth port 606 directly fluidly connected to a second distributor valve 640. The second distributor valve 640 may comprise a plurality of ports and a plurality of connecting elements configured to changeably connect to the plurality of ports of the second distributor valve 640, wherein the plurality of ports of the second distributor valve 640 comprises a seventh port 607 directly fluidly connected to the first distributor valve 620, and an eighth port 608 directly fluidly connected to the waste 700. The second distributor valve 640 may also comprise a ninth port 609. However, the exact connection of the ninth port 609 may not be important for the present description. Furthermore, the first valve 620 may also comprise a further additional port 610, which may be sealed, and which may therefore also be referred to as a dead end 610 or blind port 610.
When an element is said to be directly fluidly connected to a port A of a distribution valve 620, 640 in the specification or in the claims, this denotes a connection between the respective port A and the element without there being another port of the same distribution valve being disposed between the port A and the respective element. For example, the trap column 300 is directly fluidly connected to ports 602 and 603 of distribution valve 620. It will be understood that, e.g., in
The chromatography system 10 additionally comprises a control unit 820 that may control operation of the system 10. For ease of illustration, this control unit 820 is only depicted in
Each of the valves 620, 640 may be referred to as a distribution valve. Each valve may comprise a stator and a rotor, and a rotatable drive. The stator may comprise a plurality of ports, and the rotor may comprise connecting elements to connect the ports to one another. The rotor can be rotated with respect to the stator (by means of the rotatable drive) so that the connecting elements may establish connections between different ports. The rotatable drive can include a motor, gearbox and encoder.
In one embodiment, the pump 200 may be a metering device. The metering device may further comprise a housing and a piston. The metering device may also comprise a stepper motor or a drive device for moving the piston in the housing.
The control unit 820 may also be referred to as controller 820, and the control unit 820 can be operatively connected to other components, as depicted by dashed lines in
The controller 820 can include a data processing unit and may be configured to control the system and carry out particular method steps. The controller can send and/or receive electronic signals for instructions. The controller can also be referred to as a microprocessor. The controller can be contained on an integrated-circuit chip. The controller can include a processor with memory and associated circuits. A microprocessor is a computer processor that incorporates the functions of a central processing unit on a single integrated circuit (IC), or sometimes up to a plurality of integrated circuits, such as 8 integrated circuits. The microprocessor may be a multipurpose, clock driven, register based, digital integrated circuit that accepts binary data as input, processes it according to instructions stored in its memory and provides results (also in binary form) as output. Microprocessors may contain both combinational logic and sequential digital logic. Microprocessors operate on numbers and symbols represented in the binary number system.
Furthermore, it should be understood that in some embodiments, the system may be configured to measure pressure, e.g., by means of the pressure sensor located in the pump 200 or fluidly connected to the pump 200. The pressure sensor may also be operatively connected to the controller 820, and the controller 820 may use readings of these pressure sensors when controlling the operation of the system. The pressure sensors may be configured to measure the pressure directly. However, it should be understood that also other parameters may be measured and may be used to determine the respective pressures (and that such a procedure should also be understood as a pressure measurement and the components involved should be understood as pressure sensors). For example, it will be understood that when the pump 200 supplies a solvent, the power consumption of the pump 200 will also depend on the pressure at which it operates—the higher the operating pressure, the higher the power consumption. Thus, e.g., the power consumption of the pump 800 may also be used to derive the pressure present at the pumps 800 Thus, the system 100 may generally be configured to measure pressures present at different locations of the system 10.
It will be understood that the system 10 depicted in the Figures may be used to supply a sample to the trap column 300 and then from the trap column to the analytical column 300.
Typically, a sample may be picked up by the needle 160, and sucked into sample loop 100. The configuration depicted in
Next, the system may be switched to the configuration depicted in
Further, the sample loop 100 is fluidly connected to a dead end, e.g., to the dead end port 610.
In this configuration, the needle 160 is located in the needle seat 140. Furthermore, it will be understood that the sample loop 100 and the components fluidly connected thereto are still in an elevated pressure state, as there was nothing causing the previously present high pressure to dissipate. This is indicated by the letter p in combination with the upwardly pointing arrow. For example, the sample loop 100 may be at a pressure of approximately 1,200 bar, where it will be understood that the exact value depends on the tightness of the components and tolerances.
As depicted in
As depicted in
As depicted throughout the drawings, the pump 200 may also be connected to a reservoir of a weak solvent W. It will thus be understood that the normal “working” solvent used is the weak solvent W. In the configuration depicted in
As depicted, the wash port 900 may comprise solvent supplies. In the depicted embodiments, the wash port 900 comprises a strong solvent supply supplying a strong washing solvent SWP and a weak solvent supply supplying a weak solvent. Furthermore, it will be understood that the wash port 900 is also configured to drain any solvent present in the wash port and that all this may be controlled by the control unit 820 (cf.
Thus, in
According to
According to
The process described with regard to
It will thus be understood that the process described with regard to
More particularly, a user may choose how many cycles of the solvent loading procedure to perform and the controller 820 may control the system 10 accordingly.
The volumes of the plugs A1, B1, . . . , An, Bn, may be set automatically by a driver. For example, each plug may have a volume in the range of 0.2 μl to 10 μl, such as in the range of 2 μl to 3 μl, and the plug volume may depend on the number of cycles and/or a volume of the sample loop 100.
The solvent plugs A1, B1, . . . , An, Bn, together define a wash volume W (see
The wash volume W and equilibration volume E may then be used to wash and equilibrate the trap column 300 for the next sample, as depicted in
As more particularly depicted in
In this configuration, a flow may be caused by the pump 200, which causes the wash volume W to flow through the trap column 300 and further downstream towards and to the waste 700.
This is depicted in
Overall, the present technology thus provides a method of washing a component, e.g., a trap column 300 with different solvents provided to the component as solvent plugs.
With regard to the system 10, it will be understood that the components, with the exception of the analytical pump 500, the tubing connecting the analytical pump 500 to the first valve 620, the separation column 400, and the tubing connected to the separation column 400, may also be part of a sampler used to pick up a sample and washing fluid.
Signal 2 indicates the position of the first valve 620 in different phases of the procedure. More particularly, a higher value of 6 (see right y-axis in
With regard to the Figures, it will be understood that different phases I to IV, 0 and P are indicated in
It will thus be appreciated that throughout the steps depicted in
Signal 4 depicts a position of the loading pump 200, and this signal 4 may also be referred to as sampler compress position, as the pump 200 may be used to compress or decompress components fluidly connected thereto. The position of the pump 200 indicates a volume of the fluid accommodation volume in nl as shown in the left y-axis of the upper panel of
As depicted in
In phase II (also see
In phase III (also see
In a solvent pickup phase IV (also see
At O (see
As depicted in
Subsequently, the pump 200, which may be realized as a metering device, may again be filled with solvent (see phase “refill metering device” in
The lower panel of
As discussed, prior to switching the trap column 300 in fluid connection with the analytical pump 500 and the separation column 400, a pressure in the trap column 300 may be increased by means of the pump 200, such that the pump 200 and the sample loop 100 may initially be at a high pressure (see
Between the time 41.50 min and 41.75 min, there is an increase in the pressure signal 8. This corresponds to the above described precompression of the pump 200 and components fluidly connected thereto prior to O, i.e., prior to it being connected to the trap column 300, to avoid pressure spikes at the trap column 300.
During phase “P”, i.e., while the washing an equilibration liquids are caused to flow through the trap column 300 (see
In the lowermost section of
As also indicated in
Furthermore, as also indicated in
As also depicted in
Overall, in embodiments of the present technology, two (or more) solvents may alternatingly be used to wash a component, e.g., a trap column. For example, the different solvents may comprise a strong and weak solvent and these solvents may be supplied to the components to be washed as solvent plugs. For example, when two different solvents are used, a plug of the first solvent followed by a plug of the second solvent constitute a cycle. Overall, embodiments of the present technology thus achieve a washing cycle with different solvent compositions, and it will be understood that the cycle may be repeated multiple times.
While in the above, embodiments of the present technology have been described with reference to washing methods for washing a trap column, it should be understood that this is merely exemplary and that also other components may be used with the described washing principle, e.g., a separation column, or a separation column and a trap column together. Furthermore, the present technology is also not limiting to picking up alternating wash liquids from the wash port, but they may also be picked up from other positions. The skilled person will also understand that more than two alternating wash liquids may be used to wash trap columns and/or separation columns (e.g., three different liquids, or even more). Furthermore, it is also possible that alternating wash liquids are picked up with different compositions to wash the trap column and/or the separation column, and it is also possible to pick up more than two alternating wash liquids with different compositions to wash trap columns and/or separation columns.
Whenever a relative term, such as “about”, “substantially” or “approximately” is used in this specification, such a term should also be construed to also include the exact term. That is, e.g., “substantially straight” should be construed to also include “(exactly) straight”.
Whenever steps were recited in the above or also in the appended claims, it should be noted that the order in which the steps are recited in this text may be accidental. That is, unless otherwise specified or unless clear to the skilled person, the order in which steps are recited may be accidental. That is, when the present document states, e.g., that a method comprises steps (A) and (B), this does not necessarily mean that step (A) precedes step (B), but it is also possible that step (A) is performed (at least partly) simultaneously with step (B) or that step (B) precedes step (A). Furthermore, when a step (X) is said to precede another step (Z), this does not imply that there is no step between steps (X) and (Z). That is, step (X) preceding step (Z) encompasses the situation that step (X) is performed directly before step (Z), but also the situation that (X) is performed before one or more steps (Y1), . . . , followed by step (Z). Corresponding considerations apply when terms like “after” or “before” are used.
While in the above, preferred embodiments have been described with reference to the accompanying drawings, the skilled person will understand that these embodiments were provided for illustrative purpose only and should by no means be construed to limit the scope of the present invention, which is defined by the claims.
| Number | Date | Country | Kind |
|---|---|---|---|
| 20 2022 101211.3 | Mar 2022 | DE | national |
