Activators of autophagic flux and phospholipase D and clearance of protein aggregates including tau and treatment of proteinopathies

Abstract
The present application discloses compounds which are activators of autophagic flux and pharmaceutical compositions comprising said activators. It further discloses use of said compounds and pharmaceutical compositions in the treatment of neurodegenerative diseases, particularly proteinopathies and tauopathies such as Alzheimer's disease. It further discloses methods of enhancing autophagic flux.
Description
FIELD OF THE DISCLOSURE

The present disclosure relates to compounds which are activators of autophagic flux and pharmaceutical compositions comprising said compounds. It further relates to use of said compounds in the treatment of neurodegenerative diseases, particularly Alzheimer's disease.


BACKGROUND OF THE INVENTION

Alzheimer's disease (AD) affects approximately five million Americans and this number is predicted to triple by 2050. At present, there are no therapies to treat Alzheimer's or other related tauopathies. While clinical trials using immunotherapy targeting amyloid beta (Aβ) have had limited success, this in only subset of those afflicted with AD or other neurodegenerative diseases. Moreover, there are no therapies targeting other proteinopathies, including tau, the other major neuropathological component of AD. AD accounts for most of the dementias afflicting individuals over 65 and is estimated to cost $226 billion in healthcare, long-term care, and hospice for people with AD and other dementias annually. This extensive economic and societal burden does not account for lost income of many at-home primary caregivers including spouses and other family members.


Enhancing autophagy has been shown to have therapeutic potential in the treatment of Alzheimer's disease. Autophagic flux (including the fusion of autophagosomes to lysosomes) is a novel regulator of autophagy as it leads to the clearance of protein aggregates and reversal of pathophysiological decline. Therefore, there exists an ongoing need for promoters of autophagic flux and the clearance of autophagosomes bearing proteinopathies.


SUMMARY OF THE INVENTION

In some embodiments, compounds including pharmaceutically acceptable salts thereof, which are disclosed herein, are provided.


In some embodiments a pharmaceutical composition is provided comprising a compound disclosed herein or a pharmaceutically acceptable salt thereof. In other embodiments, methods of making the compounds and pharmaceutical compositions are also provided in, e.g., the Examples provided below.


In some embodiments a method of treating a neurodegenerative disease comprising administering to a subject in need thereof an effective amount of a compound or pharmaceutical composition disclosed herein is provided.


In some embodiments a method of enhancing autophagic flux is provided. This method comprises providing to a cell or a protein aggregate an effective amount of a compound or pharmaceutical composition disclosed herein.


These and other aspects of the invention are further disclosed in the detailed description and examples which follow.





BRIEF DESCRIPTION OF THE DRAWINGS

The following drawings form part of the present specification and are included to further demonstrate certain aspects of the present invention. The invention may be better understood by reference to one or more of these drawings in combination with the detailed description of specific embodiments presented herein.



FIG. 1 is a graph showing a photodiode array (PDA) spectrum of WHYKD8 in mouse brain.



FIG. 2 shows Western blots of LC3-II levels in primary cortical neurons following a 6 hour treatment with WHYKD1 (±BafA1) or WHYKD5.



FIG. 3 shows Western blots of LC3-II, tau, and p62 levels in organotypic slice cultures following a 6 hour treatment with WHYKD1 (top) or WHYKD3, WHYKD5, WHYKD8, WHYKD9, or WHYKD12 (bottom).



FIG. 4 is a bar graph showing the activation of phospholipase D (PLD) by the WHYKD series compounds (10 μM), and their ability to convert phospholipids to phosphatidylethanols in the presence of ethanol. C=Control, 12=WHYKD12, 15=WHYKD15, 19=WHYKD19, 5=WHYKD5, 8=WHYKD8, Fipi=a noncompetitive inhibitor of PLD activity.



FIG. 5 is a bar graph showing the activation of phospholipase D (PLD) by the WHYKD series compounds (1 μM), and their ability to convert phospholipids to phosphatidylethanols in the presence of ethanol.





DETAILED DESCRIPTION OF THE INVENTION

Although macroautophagy is known to be an essential degradative process whereby autophagosomes mediate the engulfment and delivery of cytoplasmic components into lysosomes, the lipid changes underlying autophagosomal membrane dynamics are undetermined. The inventors have previously shown that PLD1, which is primarily associated with the endosomal system, partially relocalizes to the outer membrane of autophagosome-like structures upon nutrient starvation (Dall'Armi, 2010). The localization of PLD1, as well as the starvation-induced increase in PLD activity, are altered by wortmannin, a phosphatidylinositol 3-kinase inhibitor, suggesting PLD1 may act downstream of Vps34. Pharmacological inhibition of PLD and genetic ablation of PLD1 in mouse cells decreased the starvation-induced expansion of LC3-positive compartments, consistent with a role of PLD1 in the regulation of autophagy. Furthermore, inhibition of PLD results in higher levels of tau and p62 aggregates in organotypic brain slices. These in vitro and in vivo findings establish a role for PLD1 in autophagy.


In some embodiments, a compound is provided having the formula (II):




embedded image


  • wherein Y1 and Y2 are independently selected from the group consisting of CH and N;

  • wherein X is selected from the group consisting of H, halide, and aryl;

  • wherein R1 is selected from the group consisting of optionally substituted thioheteroaryl, hydroxyl-substituted (2-aminoethyl)aryl, halide, optionally substituted thiocycloalkyl wherein 1-3 carbon atoms of the cycloalkyl is optionally replaced with a heteroatom selected from the group consisting of O, S and N, and thioaryl,


    or a salt, enantiomer, racemate, mixture thereof, or combination thereof.



In some embodiments, the compound is selected from the group consisting of:




embedded image


embedded image


embedded image


embedded image



or a salt, enantiomer, racemate, mixture thereof, or combination thereof.


In one embodiment the compound is:




embedded image



or a salt, enantiomer, racemate, mixture thereof, or combination thereof.


In another embodiment the compound is:




embedded image



or a salt, enantiomer, racemate, mixture thereof, or combination thereof.


In some embodiments, a compound is provided having the formula (III):




embedded image


  • wherein Y1 is CH;

  • wherein Y2 is N;

  • wherein X is halide;

  • wherein R1 is selected from the group consisting of optionally substituted thioheteroaryl, optionally substituted (2-aminoethyl)aryl, halide, optionally substituted thiocycloalkyl wherein 1-3 carbon atoms of the cycloalkyl is optionally replaced with a heteroatom selected from the group consisting of O, S and N, and thioaryl,


    or a salt, enantiomer, racemate, mixture thereof, or combination thereof.



In some embodiments, the compound is selected from the group consisting of:




embedded image



or a salt, enantiomer, racemate, mixture thereof, or combination thereof.


In some embodiments, a compound is provided having the formula (IV):




embedded image


  • wherein X is halide;

  • wherein R1 is selected from the group consisting of optionally substituted thioheteroaryl, optionally substituted (2-aminoethyl)aryl, halide, optionally substituted thiocycloalkyl wherein 1-3 carbon atoms of the cycloalkyl is optionally replaced with a heteroatom selected from the group consisting of O, S and N, and thioaryl,


    or a salt, enantiomer, racemate, mixture thereof, or combination thereof.



In some embodiments, the compound is selected from the group consisting of:




embedded image



or a salt, enantiomer, racemate, mixture thereof, or combination thereof.


In some embodiments, a compound is provided having the formula (V):




embedded image


  • wherein X is H;

  • wherein R1 is selected from the group consisting of optionally substituted thioheteroaryl, optionally substituted (2-aminoethyl)aryl, halide, optionally substituted thiocycloalkyl wherein 1-3 carbon atoms of the cycloalkyl is optionally replaced with a heteroatom selected from the group consisting of O, S and N, and thioaryl,


    or a salt, enantiomer, racemate, mixture thereof, or combination thereof.



In some embodiments, the compound is selected from the group consisting of:




embedded image



or a salt, enantiomer, racemate, mixture thereof, or combination thereof.


In some embodiments, a compound is provided having the formula (VI):




embedded image


  • wherein X is H;

  • wherein R1 is selected from the group consisting of optionally substituted thioheteroaryl, optionally substituted (2-aminoethyl)aryl, halide, optionally substituted thiocycloalkyl wherein 1-3 carbon atoms of the cycloalkyl is optionally replaced with a heteroatom selected from the group consisting of O, S and N, and thioaryl,


    or a salt, enantiomer, racemate, mixture thereof, or combination thereof.



In some embodiments, the compound is selected from the group consisting of:




embedded image



or a salt, enantiomer, racemate, mixture thereof, or combination thereof.


In some embodiments, a compound is provided having the formula (VII):




embedded image


  • wherein R1 is selected from the group consisting of optionally substituted thioheteroaryl, optionally substituted (2-aminoethyl)aryl, halide, optionally substituted thiocycloalkyl wherein 1-3 carbon atoms of the cycloalkyl is optionally replaced with a heteroatom selected from the group consisting of O, S and N, and thioaryl,


    or a salt, enantiomer, racemate, mixture thereof, or combination thereof.



In some embodiments, the compound is selected from the group consisting of:




embedded image



or a salt, enantiomer, racemate, mixture thereof, or combination thereof.


In some embodiments, a compound is provided having the formula (VIII):




embedded image


  • wherein R1 is selected from the group consisting of optionally substituted thioheteroaryl, optionally substituted (2-aminoethyl)aryl, halide, optionally substituted thiocycloalkyl wherein 1-3 carbon atoms of the cycloalkyl is optionally replaced with a heteroatom selected from the group consisting of O, S and N, and thioaryl,


    or a salt, enantiomer, racemate, mixture thereof, or combination thereof.



In some embodiments, the compound is selected from the group consisting of:




embedded image



or a salt, enantiomer, racemate, mixture thereof, or combination thereof.


In some embodiments, a compound is provided having the formula (IX):




embedded image


  • wherein Y3 is CH or N;

  • wherein R2 is optionally substituted (2-aminoethyl)aryl,


    or a salt, enantiomer, racemate, mixture thereof, or combination thereof.



In some embodiments, the compound is selected from the group consisting of:




embedded image



or a salt, enantiomer, racemate, mixture thereof, or combination thereof.


In some embodiments, a compound is provided having the formula (X):




embedded image


  • wherein Y3 is CH;

  • wherein R2 is selected from the group consisting of optionally substituted thioheteroaryl, optionally substituted (2-aminoethyl)aryl, halide, optionally substituted thiocycloalkyl wherein 1-3 carbon atoms of the cycloalkyl is optionally replaced with a heteroatom selected from the group consisting of O, S and N, and thioaryl,


    or a salt, enantiomer, racemate, mixture thereof, or combination thereof.



In some embodiments, the compound is selected from the group consisting of:




embedded image



or a salt, enantiomer, racemate, mixture thereof, or combination thereof.


In some embodiments, a compound is provided having the formula (XI):




embedded image


  • wherein R2 is selected from the group consisting of optionally substituted thioheteroaryl, optionally substituted (2-aminoethyl)aryl, halide, optionally substituted thiocycloalkyl wherein 1-3 carbon atoms of the cycloalkyl is optionally replaced with a heteroatom selected from the group consisting of O, S and N, and thioaryl,


    or a salt, enantiomer, racemate, mixture thereof, or combination thereof.



In some embodiments, the compound is selected from the group consisting of:




embedded image



or a salt, enantiomer, racemate, mixture thereof, or combination thereof.


In some embodiments, a compound is provided having the formula (XII):




embedded image


  • wherein Y4 is CH or N;

  • wherein R3 is selected from the group consisting of optionally substituted thioheteroaryl, optionally substituted (2-aminoethyl)aryl, halide, optionally substituted thiocycloalkyl wherein 1-3 carbon atoms of the cycloalkyl is optionally replaced with a heteroatom selected from the group consisting of O, S and N, and thioaryl,


    or a salt, enantiomer, racemate, mixture thereof, or combination thereof.



In some embodiments, the compound is selected from the group consisting of:




embedded image



or a salt, enantiomer, racemate, mixture thereof, or combination thereof.


In some embodiments, a compound is provided having the formula (XIII):




embedded image


  • wherein R2 is selected from the group consisting of optionally substituted thioheteroaryl, optionally substituted (2-aminoethyl)aryl, halide, optionally substituted thiocycloalkyl wherein 1-3 carbon atoms of the cycloalkyl is optionally replaced with a heteroatom selected from the group consisting of O, S and N, and thioaryl,


    or a salt, enantiomer, racemate, mixture thereof, or combination thereof.



In some embodiments, the compound is selected from the group consisting of:




embedded image



or a salt, enantiomer, racemate, mixture thereof, or combination thereof.


In some embodiments, a compound is provided having the formula (XIV):




embedded image


  • wherein R2 is selected from the group consisting of optionally substituted thioheteroaryl, optionally substituted (2-aminoethyl)aryl, halide, optionally substituted thiocycloalkyl wherein 1-3 carbon atoms of the cycloalkyl is optionally replaced with a heteroatom selected from the group consisting of O, S and N, and thioaryl,


    or a salt, enantiomer, racemate, mixture thereof, or combination thereof.



In some embodiments, the compound is selected from the group consisting of:




embedded image



or a salt, enantiomer, racemate, mixture thereof, or combination thereof.


In some embodiments, a compound is provided having the formula (XV):




embedded image


  • wherein X is H or halide;

  • wherein Z1 is O;

  • wherein R4 is selected from the group consisting of H, optionally substituted alkyl, Et, CF3, optionally substituted cycloalkyl, optionally substituted aryl, optionally substituted heteroaryl, and





embedded image


In some embodiments, the compound is selected from the group consisting of:




embedded image




    • X═F, Cl, Br, H

    • R═H, CH3, Et, CF3,







embedded image




    • cycloalkyl, ary, heteroaryl,


      or a salt, enantiomer, racemate, mixture thereof, or combination thereof.





In one embodiment the compound is




embedded image



or a salt, enantiomer, racemate, mixture thereof, or combination thereof.


In some embodiments a pharmaceutical composition is provided comprising a compound disclosed herein or a pharmaceutically acceptable salt thereof.


In some embodiments a method of treating a neurodegenerative disease comprising administering to a subject in need thereof an effective amount of a compound or pharmaceutical composition disclosed herein is provided. In some embodiments the neurodegenerative disease is a proteinopathy. Proteinopathies include, but are not limited to, Parkinson's disease, Alzheimer's disease, Amyotrophic Lateral Sclerosis (ALS), Huntington's disease, chronic traumatic encephalopathy (CTE), frontotemporal dementia (FTD), inclusion body myopathy (IBM), Paget's disease of bone (PDB), cerebral β-amyloid angiopathy, prion diseases, familial dementia, CADASIL, amyloidosis, Alexander disease, seipinopathies, type II diabetes, pulmonary alveolar proteinosis, cataracts, cystic fibrosis and sickle cell disease. In some aspects of this embodiment, the proteinopathy is a tauopathy. Tauopothies include but are not limited to, Alzheimer's disease, Parkinson's disease, Huntington's disease, progressive supranuclear palsy, chronic traumatic encephalopathy (CTE), frontotemporal dementia (FTD), Lytico-Bodig disease, subacute sclerosing panencephalitis, ganglioglioma, gangliocytoma, and argyrophilic grain disease. In a preferred embodiment, the neurodegenerative disease is Alzheimer's disease.


In some embodiments a method of enhancing autophagic flux is provided. This method comprises providing to a cell or a protein aggregate an effective amount of a compound or pharmaceutical composition disclosed herein.


The embodiments described in this disclosure can be combined in various ways. Any aspect or feature that is described for one embodiment can be incorporated into any other embodiment mentioned in this disclosure. While various novel features of the inventive principles have been shown, described and pointed out as applied to particular embodiments thereof, it should be understood that various omissions and substitutions and changes may be made by those skilled in the art without departing from the spirit of this disclosure. Those skilled in the art will appreciate that the inventive principles can be practiced in other than the described embodiments, which are presented for purposes of illustration and not limitation.


EXAMPLES

The following examples are provided to further illustrate certain aspects of the present invention. These examples are illustrative only and are not intended to limit the scope of the invention in any way.


Example 1

Example Synthetic Schemes


Scheme 1 shows the synthesis of compounds of the formula:




embedded image



e.g., compounds of formula (II) and formula (III).




embedded image



Representative General Procedure


A 4-chloroquinazoline and thiol were stirred in anhydrous THF at room temperature. A base, such as triethylamine, was added. The reaction mixture was heated to 80° C. and was stirred overnight at said temperature, after which it was allowed to cool to room temperature. It was then diluted with distilled water, and the organic material was extracted with ethyl acetate (3×). The combined organic extracts were washed with brine (1×) and dried with anhydrous sodium sulfate. The solvent was evaporated in vacuo, and the crude material was purified either via column chromatography or prep TLC, employing either 10% MeOH in methylene chloride or 10:1 pentane:diethyl ether as the eluent.


The above procedure is representative. Other examples disclosed herein could be made by similar techniques or other methods known in the art.


Scheme 2 shows preparation of 1-chloro-7-fluoroisoquinoline.




embedded image


Scheme 3 shows the synthesis of compounds of the formula:




embedded image



e.g., compounds of formula (IV), formula (V), formula (VI), formula (VII), and formula (VIII).




embedded image


Scheme 4 shows the synthesis of compounds of the formula:




embedded image



e.g., compounds of formula (XII), and formula (XIII).




embedded image


Scheme 5 shows the synthesis of compounds of the formula:




embedded image



e.g., compounds of formula (IX), formula (X), and formula (XI).




embedded image


Scheme 6 shows the synthesis of compounds of the formula:




embedded image



e.g., compounds of formula (XIV).




embedded image


Example 2

Activators of Autophagic Flux and Phospholipase D


The WHYKD series of compounds were synthesized for optimal brain penetrance based on the molecular weight (MW) and partition coefficient (log P), according to Lipinski's Rule for CNS penetrance: MW≤400, log P≤5.


Activators according to the formula:




embedded image



were synthesized according to the schemes above. Molecular weights and log P were calculated. Results are shown in Table 1 below.
















TABLE 1






PROJECT








STRUCTURE
ID
M.W.
log P
X
Y1
Y2
R1
























embedded image


WHYKD3
323.17
3.85
Br
N
N
thioheteroaryl







embedded image


WHYKD4
369.44
5.69
aryl
N
N
Thioheteroaryl







embedded image


WHYKD5
262.27
3.18
F
N
N
Thioheteroaryl







embedded image


WHYKD6
244.28
3.02
H
N
N
thioheteroaryl







embedded image


WHYKD7
278.72
3.58
Cl
N
N
thioheteroaryl







embedded image


WHYKD8
299.76
3.91
Cl
N
N
(2- aminoethyl)aryl







embedded image


WHYKD9
182.58
2.58
F
N
N
Cl







embedded image


WHYKD10
243.29
2.9
H
N
CH
thioheteroaryl







embedded image


WHYKD11
261.28
3.06
F
N
CH
thioheteroaryl







embedded image


WHYKD12
262.35
4.38
F
N
N
thiocycloalkyl







embedded image


WHYKD13
316.44
5.21
F
N
N
thiocycloalkyl







embedded image


WHYKD14
314.42
4.66
F
N
N
thiocycloalkyl







embedded image


WHYKD15
248.32
3.96
F
N
N
thiocycloalkyl







embedded image


WHYKD16
274.36
4.19
F
N
N
thiocycloalkyl







embedded image


WHYKD17
357.49
4.09
F
N
N
thiocycloalkyl







embedded image


WHYKD18
386.48
4.41
F
N
N
thiocycloalkyl







embedded image


WHYKD19
264.32
2.63
F
N
N
thiocycloalkyl







embedded image


WHYKD20
296.36
4.8
F
N
N
thioaryl







embedded image


WHYKD30
356.23
5.16
I
N
N
thiocycloalkyl









Activators according to the formula:




embedded image



were synthesized according to the schemes above. Molecular weights and log P were calculated. Results are shown in Table 2 below.














TABLE 2






PROJECT






STRUCTURE
ID
M.W.
log P
Y3
R2






















embedded image


WHYKD21
272.33
3.36
N
(2-aminoethyl)aryl







embedded image


WHYKD23
271.34
3.66
CH
(2-aminoethyl)aryl









Activators according to the formula:




embedded image



were synthesized according to the schemes above. Molecular weights and log P were calculated. Results are shown in Table 3 below.














TABLE 3






PROJECT






STRUCTURE
ID
M.W.
log P
Y4
R3









embedded image


WHYKD1
251.29
2.56
N
thioheteroaryl







embedded image


WHYKD2
272.33
2.89
N
(2-aminoethyl)aryl







embedded image


WHYKD22
271.34
3.34
CH
(2-aminoethyl)aryl









Activators according to the formula:




embedded image



were synthesized according to the schemes above. Molecular weights and log P were calculated. Results are shown in Table 4 below.

















TABLE 4






PROJECT

log







STRUCTURE
ID
M.W.
P
X
Y1
Y2
R4
Z1









embedded image


WHYKD24
164.14
1.02
F
N
N
H
O









Example 3

Design of Derivatives


Several series of derivatives were synthesized based on the following lead compounds:




embedded image


In addition to log P, the topological polar surface area (tPSA), CLogP (log P calculated by group contribution method), and Log S (solubility) were calculated. Results are shown in the Tables below.









TABLE 5







Modifications to the core and side chain (Series 1)











STRUCTURE
log P
tPSA
CLogP
LogS
















embedded image


3.35
52.68
2.65154
−3.235







embedded image


3.12
61.47
2.34241
−3.295







embedded image


2.94
40.32
1.83259
−4.663







embedded image


3.19
27.96
3.25375
−3.864







embedded image


4.14
12.36
4.64041
−4.354







embedded image


2.71
49.11
2.01759
−4.354







embedded image


2.95
36.75
3.23654
−3.554







embedded image


2.8
21.59
2.80041
−3.813







embedded image


4.56
12.36
5.19941
−4.832
















TABLE 6







Modifications to the core and side chain (Series 2)











STRUCTURE
log P
tPSA
CLogP
LogS
















embedded image


2.31
77.4
0.803829
−1.704







embedded image


12.07
86.19
0.539011
−1.765







embedded image


1.9
65.04
−0.0366305
−3.133







embedded image


1.66
73.83
0.148224
−2.824







embedded image


2.14
52.68
1.40054
−2.334







embedded image


1.91
61.47
1.38428
−2.024







embedded image


3.09
37.08
2.83701
−2.823







embedded image


3.51
37.08
3.39601
−3.301







embedded image


1.76
46.31
0.997011
−2.283
















TABLE 7







Modifications to the core and side chain (Series 3)











STRUCTURE
log P
tPSA
CLogP
LogS
















embedded image


2.89
77.4
0.647513
−1.626







embedded image


2.65
86.19
0.382662
−1.686







embedded image


2.48
65.04
−0.192932
−3.117







embedded image


2.25
73.83
−0.00808129
−2.806







embedded image


2.73
52.68
1.24423
−2.303







embedded image


2.49
61.47
1.22796
−1.992







embedded image


3.68
37.08
2.68066
−2.893







embedded image


4.09
37.08
3.23966
−3.372







embedded image


2.34
46.31
0.840662
−2.256
















TABLE 8







Modifications to the core and side chain (Series 4)











STRUCTURE
log P
tPSA
CLogP
LogS
















embedded image


1.68
77.4
0.647513
−1.441







embedded image


1.45
86.19
0.382662
−1.501







embedded image


1.28
65.04
−0.192932
−2.932







embedded image


1.04
73.83
−0.00808129
−2.621







embedded image


1.52
52.68
1.24423
−2.119







embedded image


1.28
61.47
1.22796
−1.808







embedded image


2.47
37.08
2.68066
−2.704







embedded image


2.89
37.08
3.23966
−3.183







embedded image


1.13
46.31
0.840662
−2.071
















TABLE 9







Modifications to the core and side chain (Series 5)











STRUCTURE
log P
tPSA
CLogP
LogS
















embedded image


1.68
77.4
0.647513
−1.466







embedded image


1.45
86.19
0.382662
−1.526







embedded image


1.28
65.04
−0.192932
−2.957







embedded image


1.04
73.83
−0.00808129
−2.646







embedded image


1.52
52.68
1.24423
−2.144







embedded image


1.28
61.47
1.22796
−1.832







embedded image


2.47
37.08
2.68066
−2.733







embedded image


2.89
37.08
3.23966
−3.212







embedded image


1.13
46.31
0.840662
−2.096
















TABLE 10







Modifications to the core and side chain (Series 6)











STRUCTURE
log P
tPSA
CLogP
LogS
















embedded image


2.11
77.4
0.857513
−1.525







embedded image


1.87
86.19
0.592663
−1.585







embedded image


1.7
65.04
0.0170677
−3.017







embedded image


1.46
73.83
0.201919
−2.705







embedded image


1.94
52.68
1.45423
−2.203







embedded image


1.71
61.47
1.43796
−1.892







embedded image


2.89
37.08
2.89066
−2.787







embedded image


3.31
37.08
3.44966
−3.266







embedded image


1.55
46.31
1.05066
−2.155
















TABLE 11







Modifications to the core and side chain (Series 7)













STRUCTURE
log P
tPSA
CLogP
LogS



















embedded image


1.63
74.27
1.1096
−1.275









embedded image


1.4
83.06
0.834
−1.333









embedded image


1.23
61.91
0.272969
−2.704









embedded image


0.99
70.7
0.457768
−2.391









embedded image


1.47
49.55
1.70682
−1.904









embedded image


1.24
58.34
1.69005
−1.592









embedded image


2.42
33.95
3.132
−2.403









embedded image


2.84
33.95
3.691
−2.883









embedded image


1.08
43.18
1.292
−1.864

















TABLE 12







Modifications to the core and side chain (Series 8)











STRUCTURE
log P
tPSA
CLogP
LogS
















embedded image


1.96
74.27
0.8996
−1.745







embedded image


1.72
83.06
0.624
−1.803







embedded image


1.55
61.91
0.0629689
−3.174







embedded image


1.31
70.7
0.247768
−2.862







embedded image


1.79
49.55
1.49682
−2.374







embedded image


1.56
58.34
1.48005
−2.062







embedded image


2.74
33.95
2.922
−2.874







embedded image


3.16
33.95
3.481
−3.353







embedded image


1.4
43.18
1.082
−2.335
















TABLE 13







Modifications to the core and side chain (Series 9)













STRUCTURE
log P
tPSA
CLogP
LogS



















embedded image


3.0
65.04
1.74907
−2.051









embedded image


2.76
73.83
1.47586
−2.109









embedded image


2.59
52.68
0.911314
−3.542









embedded image


2.36
61.47
1.09641
−3.23









embedded image


2.84
40.32
2.34546
−2.728









embedded image


2.6
49.11
2.32952
−2.416









embedded image


3.79
24.72
3.77386
−3.323









embedded image


4.2
24.72
4.33286
−3.802









embedded image


2.45
33.95
1.93386
−2.687

















TABLE 14







Modifications to the core and side chain (Series 10)













STRUCTURE
log P
tPSA
CLogP
LogS



















embedded image


2.94
65.04
1.53907
−2.188









embedded image


2.71
73.83
1.26586
−2.247









embedded image


2.54
52.68
0.701314
−3.68









embedded image


2.3
61.47
0.886405
−3.367









embedded image


2.78
40.32
2.13546
−2.866









embedded image


2.55
49.11
2.11952
−2.554









embedded image


3.73
24.72
3.56386
−3.468









embedded image


4.15
24.72
4.12286
−3.947









embedded image


2.39
33.95
1.72386
−2.824

















TABLE 15







Quinazolinones (Series 11)











STRUCTURE
log P
tPSA
CLogP
LogS
















embedded image


1.02
41.46
0.506065
−1.702







embedded image


1.42
41.46
1.07606
−2.152







embedded image


1.69
41.46
1.22606
−2.273







embedded image


0.86
41.46
0.305
−1.452












embedded image











Example 4

Biological Testing of WHYKD Compounds


The assays listed below were carried out using a transfected HEK 293 (Human Embryo Kidney) cell line that has been engineered to express fluorescently tagged (mKate2) Tau (unless otherwise noted). The cells were grown in the presence of the antibiotic doxycycline. When the antibiotic is removed the cells produce Tau (which can be quantified), thus allowing the test compounds' effects on Tau's production to be compared. Doxycycline was removed for 72 hours prior to exposure to the test compounds to promote sufficient Tau production. Cells were subsequently plated into plates for each of the assays described below.


Autophagy, Aggregate and Tau-mKate2 IC50 Assays


Preparation of Plated Tet-Regulated HEK 293 Cells (Jump-In™ cells)


1) HEK cells with tet-regulated expression of mKate2 tagged Tau were grown in DMEM medium (Dulbecco's Modified Eagle's Medium) containing 0.5 μg/mL doxycycline (Dox)(MP-Bio#198955), after 3-5 days Dox was removed by washing the cells twice with sterile phosphate buffered saline (PBS; Invitrogen#14190-144), cells were left in DMEM without Dox for 72 hours (to further clear remaining Dox in cells).


2) 96 well, black plates with ultra-thin clear bottom (Costar#3720) were coated with Poly D Lysine (PDL) (Sigma-p0899-M wt. 70,000-150,000) or commercially sourced transparent polystyrene/glass bottom plates were used and coated. PDL was aspirated after 2 hours and plates were allowed to dry out for another 2-3 hours. The coating procedure was completed under sterile conditions. Plates were used immediately after coating.


3) Cells were detached from the flasks using triple express (Invitrogen#12605-010) and plated in PDL-coated 96 well plates. For plating, 200 μL of medium was added to each well at a concentration of 400 k cells/ml (80 k cells/well). 1 row of peripheral wells on all sides was spared to prevent any changes in experimental conditions due to evaporation from these wells. Warm medium/PBS (containing no cells) was pipetted into the peripheral wells and PBS was pipetted into spaces between wells to maintain homogenous conditions across the central wells. Cells were then allowed to settle down and attach to the bottom of the plate for 18-24 hours.


Treatment and Staining with Cyto-ID™


Cyto-ID™ assay measures autophagic vacuoles and monitors autophagic flux in lysosomally inhibited live cells using a novel dye that selectively labels accumulated autophagic vacuoles. The dye used in the kit prevents its accumulation within lysosomes, but enables labelling of vacuoles associated with the autophagy pathway using the LC3 biomarker.


The test compounds (along with CytoID™ dye and Hoechst stain) were added to the cells and incubated for 3 hours. Reference compounds were also used in each plate, Rapamycin was used for autophagy induction and chloroquine was used for lysosomal inhibition. After 3 hours test compound was aspirated off and kept. Cells were then washed and read using a fluorescence plate reader. Hoescht, Cyto-ID™ and mKate2 were measured using 3 distinct wavelengths on the plate reader. The Hoescht measurement allowed normalisation of results across wells. After reading, test compound was re-added and the cells are left for a further 21 hours. At the 24 hour time point cells were once again washed and plates read using the fluorescence plate reader.


1) Before initiating treatment, all wells were washed once with warm FluoroBrite™ (FB) DMEM (Dulbecco's Modified Eagle's Medium) (Invitrogen #A18967-01) with 10% Fetal Bovine Serum, dialyzed (FBS; Invitrogen #26400-044) and 1% MEM (Minimal Essential Media) NEAA (Non Essential Amino Acids). 280 μl of warm medium/PBS was maintained in peripheral wells.


2) Test samples were prepared in warm FluoroBrite™ DMEM and with 10% FBS and 1% NEAA (FB-DMEM). Rapamycin 200 nM (Enzo #BML-A275-0025) was used for autophagy induction and 15 mM chloroquine was used for lysosomal inhibition (bafilomycin or similar compounds were not used as they give a false negative result in the assay). Dimethyl Sulfoxide 1:1000 (DMSO; Fisher #BP231-100) was used as control. Autophagosome marker Cyto ID™ (1:500; Enzo #ENZ-51031-k200) and Hoechst (1:200) was added to these test sample preparations before treating the cells.


3) The treatment groups were staggered in order to obtain similar conditions across all groups. For an n=6, 3 control wells were near the periphery and 3 were near the center of the plate, same was true for Rapamycin and any other drug treatments.


4) Cells were treated/stained for 3 hours at 37° C. At 3 hours post-treatment, test sample preparation containing Cyto-ID™ was carefully aspirated and transferred to a fresh sterile microplate (Falcon#353072) for reuse. Medium in the treatment plate was immediately replaced with warm FB-DMEM. The new plate with test compound preparations was placed in an incubator at 37° C.


5) Treatment plate was then washed quickly 3 times with warm FB-DMEM (100 μL/well). After the 3rd wash 50 μL of warm medium was left in each well. At this point, the plate was ready for reading. See details in Reading Plate section. Hoescht was read at Excitation wavelength (Ex)=355 nm & Emission wavelength (Em)=446 nm. mKate2 was read at Ex=575 nm & Em=630 nm. Cyto-ID™ was read at Ex=463 nm & Em=534 nm.


6) Afterwards, medium was replaced with corresponding wells of the plate containing test compound/stain preparation and re-incubated at 37° C.


7) At 24 hours post reaction all medium was aspirated and the plate was washed 3 times with warm FB-DMEM, and read again for Hoescht (Ex=355 nm Em=446 nm), CytoID™ (Ex=463 nm; Em=534 nm) and mKate2 (Ex=575 nm; Em=630 nm) in 80 μl of FB-DMEM.


Proteostat™ Protein Aggregation Assay


Proteostat™ assay was used to detect aggresomes via measurement of p62. Aggresomes are inclusion bodies that form when the ubiquitin-proteasome machinery is overwhelmed with aggregation-prone proteins. Typically, an aggresome forms in response to some cellular stress, such as hyperthermia, viral infection, or exposure to reactive oxygen species. Aggresomes may provide a cytoprotective function by sequestering the toxic, aggregated proteins and may also facilitate their ultimate elimination from cells by autophagy. Following the final plate read described in the Cyto-ID™ assay described above, Proteostat™ detection reagent was added to every well and the plate was incubated for 15 minutes. Following this incubation, the plate was read by fluorescence plate reader at the specified wavelength. After this plate read, the cells were fixed by incubating with warm paraformaldehyde for 8 minutes. The fixed cells were then read by plate reader as before.


8) Detection solution was prepared by adding 10 μl Proteostat™ detection reagent (ENZ-51023-KP002) and 200 μL of 10× assay buffer into 1790 μL water and mixing well.


9) 20 μL was added per well (each well had 80 μl of Fluorobrite™ media with no FBS) and incubated in the dark for 15 min at room temperature.


10) Fluorescence for Proteostat™ (Ex=550 nm; Em=600 nm) was then read.


11) Plate was fixed by adding warm 4% paraformaldehyde 100 μL (PFA; EMS#15710) to all the wells and was incubated at room temperature for 8 min. PFA was removed and plate was washed with PBS (room temp) 3 times.


12) Plate was read again with fixed cells and same configuration at plate reader.


Note: CytoID™ and Proteostat™ are measures for LC3 and p62, which can be substituted using fluorescent tagged antibodies with corresponding fluorophores.


Reading Plate Using Tecan M200


13) Plate was transferred to plate reader (Tecan Infinite M200) and read at optimal gain for mKate2, Cyto ID™ and Proteostat™ (last read only).


14) Each well was read at 5 consistent locations per well for the three signals. Each of these 5 locations was flashed 25 times. Signal from each well was first recorded as an average of 25 flashes, and the final value was based on average of 5 read locations per well. A peripheral border of 1000 μm was spared in all wells to mitigate any inconsistencies in reads due to minor cell loss across the periphery resulting from aspiration and washings. Peripheral wells were used to detect any background noise due to medium or PBS.


15) mKate2 was read at Ex=575 nm and Em=630 nm. Cyto-ID™ was read at Ex=463 nm and Em=534 nm. For the final read, Proteostat™ was read at Ex=490 nm and Em=600 nm. Excitation & Emission Bandwidth for all three reads were 9 nm & 20 nm respectively.


16) Calculations were initially subtracted from well background (media only well) and normalized using Hoescht levels.


Reading Plate Using IN Cell Analyzer 2000 (High Content Imaging).


17) Plate was transferred to IN Cell analyzer 2000 and imaged for mKate2, Cyto ID™, Proteostat™ and Hoechst (last read only).


18) Each well was imaged at 4 consistent fields located around the center of the well. All images were taken using 20× objective. The average reading from these 4 fields was recorded as the reading for that corresponding well. No images were taken from periphery of the wells to mitigate any inconsistencies in reads due to minor cell loss across the periphery resulting from aspiration and washings. Peripheral wells were used to detect any background noise due to medium or PBS.


19) FITC/FITC filter (Ex=490 nm−bandwidth 20 nm/Em=525 nm−bandwidth 36 nm) was used to image Cyto ID™. mKate2 was imaged using TexasRed/TexasRed filters (Ex=579 nm−bandwidth 34 nm/Em=624 nm−bandwidth 40 nm). For the Proteostat™ images FITC/dsRed combination was used (Ex=490 nm−bandwidth 20 nm/Em=605 nm−bandwidth 52 nm). Nuclei were imaged using DAPI/DAPI filter set (Ex=350 nm−bandwidth 50 nm/Em=455 nm−bandwidth 50 nm).


p62 Aggregate and Tau Aggregate Western Blot Assay


Western blot assays were performed to determine protein changes in Tau and p62. Cells were cultured as above and incubated with test compounds for 24 h. Following test compound incubation, the test compound was aspirated off and cells were washed before harvesting. Cells were spun at a low speed and supernatant was aspirated to leave the cell pellet. The cell pellet was then homogenized in buffer, centrifuged at high speed, and the supernatant aspirated and further separated into total fraction and aggregate fraction allowing quantification of soluble and insoluble proteins. Western blots were run on the samples, gels transferred to nitrocellulose and incubated with antibodies for Tau and p62. After incubation with secondary antibodies for detection, the bands of protein were quantified by chemiluminescence.


1) Jump-In™ cells (see above) were maintained in 0.5 μg/mL doxycycline until use.


2) Three days prior to plating, cells were replated at 40% confluency in media without doxycycline.


3) The day prior to experimentation, 750 000 cells were plated per well in a 6-well plate (250 000 cells in 12 well plate).


4) On the day of experiment, cells were washed in warmed HBSS (Hank's Balanced Salt Solution) twice before media containing test compound (n=3 per compound per dose) or vehicle were added to the wells (1.5 mL in 6 well, 600 μL in 12 well). Plates were incubated for 24 hours at 37° C. with 5% CO2.


5) Cells were rinsed twice in warmed HBSS before harvesting in 1 mL HBSS and transferred to 1.5 mL microtubes.


6) Samples were spun at 500×g for 2 min at 4° C., and HBSS supernatant aspirated, leaving only the cell pellet. The cell pellet may be flash frozen and stored at −80° C. until use.


Sample Preparation


7) The cell pellet was homogenized in RIPA+ (Radio-Immunoprecipitation Assay) buffer containing protease inhibitors and phosphatase inhibitors and gently homogenized using a cell homogenizer.


8) Samples were then centrifuged for 20 min at 20,000 g at 4° C.


9) The supernatant was transferred to a new tube.


10) The supernatant was quantified for protein concentration using the Pierce™ Protein Assay.


11) Total fraction: 200 μg of supernatant was used to make a 1 mg/ml protein solution by adding RIPA+ buffer to bring the volume to 1304 and adding 204 of 1M DTT (dithiothreitol) (to make a final concentration of 100 mM DTT) and 504 of 4× Invitrogen NuPAGE LDS (lithium dodecyl sulfate) loading buffer (4×, 10 ml—NP0007) with 100 mM DTT.


12) Aggregate fraction: For aggregates, 100 μg of sample was brought up to a final volume of 900 μL.


13) 100 μL of 10% sarkosyl solution was added to the sample and rotated at 4° C. for 60 min.


14) The sample was then centrifuged at 100,000 g for 60 min at 4° C.


15) The supernatant was carefully removed, leaving the pellet undisturbed. The tube was inverted to remove any additional liquid. If there was excess liquid, steps 12-14 were repeated to ensure a pure aggregate sample. Pellets were resuspended and solubilized in 65 μL of PBS before the addition of 10 μL of 1M and 25 μL of 4× Invitrogen NuPAGE LDS loading buffer with 100 mM DTT.


Electrophoresis/Western Blot


16) Prior to loading, the samples were heated at 90° C. for 2 min. A quick spin of the samples was performed to ensure there was no condensation on the tube. The 4-12% Tris-Bis gel was prepared using 1×MOPS buffer (Invitrogen—NP0001) and anti-oxidant (NP0005). For the soluble fraction, 2 μg of sample was loaded to each well; for the insoluble fraction, 5 μg of sample was loaded per well. 8 μL of Invitrogen Sharp MW standard was then loaded (optimally, all wells had the same volume of sample buffer.)


17) Sample was electrophoresed at 150V for approximately 1 h 15 min (until the running dye reached the base of the gel.)


18) The gel was then equilibrated in transfer buffer (25 mM Tris-HCl pH 8.3, 192 mM glycine, 20% (v:v) methanol) for 5 min.


19) The gel was then removed and transferred onto 0.2 μM nitrocellulose (GE BA83 10600001) at 200 mA for 90 minutes.


20) After transfer, the blot was briefly stained (15 s) with 0.1% Ponceau S in 5% acetic acid to ensure consistent sample loading between lanes.


21) The blot was then rinsed in TBS-T (Tris-buffered saline-polysorbate) for 2 min to remove the Ponceau S stain prior to immunoprobing.


Immunodetection


22) Samples were blocked in 5% milk in TBST for 30 min, and then rinsed in TBS-T until all buffer was clear (no milk residues remained in solution).


23) Blots were incubated in primary antibody (1:4000 PHF1 or CP27 for tau; 1:4000 p62 Abnova for p62; 1:5000 GAPDH (glyceraldehyde 3-phosphate dehydrogenase) for loading control) overnight in SuperBlock™ TBS-T at 4° C. on a rocking table.


24) After primary antibody exposure, blots were washed three times in TBS-T for 15 min.


25) Blots were then incubated in 1:4000 secondary antibody (Jackson Laboratories goat anti-mouse HRP conjugate).


26) After secondary, blots were washed three times in TBST for 15 min.


27) Blots were then developed using Millipore chemiluminescent fluid (1 ml per reagent; WBKLS0500) and detected using a Fuji LAS3000 Imaging unit at increments of 10 seconds.


28) Images were quantified using resident software or NIH Image J.


PLD Assay


Cells were incubated with test compound for 24 hours. 25 minutes prior to harvest at 24 hours, 3% ethanol solution was added to the wells to catalyze cleavage of the phospholipid. Cells were then placed on ice, washed and harvested. The harvested cells were centrifuged and the supernatant was aspirated and the pellet kept. The pellet was resuspended and chloroform/methanol lipid extraction was performed. The sample was centrifuged and the organic layer was separated, dried under nitrogen and stored at −80° C. On the day of analysis, samples were resuspended and analysed by LC/MS. All phosphatidylethanol species (PEtOH32-40:0-6:16/18:0/1) were combined together and represented as total lipid content (all lipid species).


The assay was run in e18 primary cortical neurons from PLD1 or PLD2 KO mice cultured for 14 days. Alternatively, the assay can be run in the cells described above in the presence of excess PLD1 or PLD2 inhibitor to preclude that particular action from contributing to the effect of the drug.


1) Jump-In™ cells (see above) were maintained in 0.5 μg/mL doxycycline until use. For neurons, e18 fetuses were used, cortical neurons extracted and plated onto PLD-collagen coated 6 well plates and incubated for 14 days prior to use.


2) Three days prior to plating, cells were replated at 40% confluency in media without doxycycline.


3) The day prior to experimentation, 750 000 cells were plated per well in a 6-well plate (250 000 cells in 12 well plate).


4) On the day of experiment, cells were washed in warmed HBSS twice before media containing test compound (n=3 per compound per dose), inhibitor (355 nM ML298 or 50 nM VU0150669), or vehicle are added to the wells (1.5 mL in 6 well, 600 μL in 12 well). Plates were incubated for 24 hours at 37° C. with 5% CO2.


5) 25 minutes prior to harvest, a 165 μL of a 3% ethanol solution was added to each well.


6) For harvesting, plates were placed on ice and cells were rinsed twice with ice cold HBSS before harvesting in 1 mL HBSS and transferring to 1.5 mL microtubes.


7) Samples were spun at 500×g for 2 min at 4° C., and HBSS supernatant aspirated, leaving only the cell pellet. The cell pellet could be flash frozen and stored at −80° C. until use.









TABLE 16







Biological Testing of WHKD Compounds 1-24












% Inhibition
% Increase

Cyto-



Tau/aggregate
Autophagy

toxixity


Compound
(1 μM)
Markers
PLD
LC50





WHYKD1
No Effect @ 2 μM
No Effect @ 2 μM
NC
>100 μM


WHYKD2
No Effect @ 2 μM
No Effect @ 2 μM
ND
>100 μM


WHYKD3
No Effect @ 2 μM
No Effect @ 2 μM
NC
>100 μM


WHYKD4
No Effect @ 2 μM
No Effect @ 2 μM
ND
>100 μM


WHYKD5
35%
20%
1.7X
>100 μM


WHYKD6
No Effect @ 2 μM
No Effect @ 2 μM
ND
>100 μM


WHYKD7
No Effect @ 2 μM
No Effect @ 2 μM
ND
>100 μM


WHYKD8
30%
25%
2.8X
>100 μM


WHYKD9
No Effect @ 2 μM
No Effect @ 2 μM
ND
>100 μM


WHYKD10
No Effect @ 2 μM
No Effect @ 2 μM
ND
>100 μM


WHYKD11
No Effect @ 2 μM
No Effect @ 2 μM
ND
>100 μM


WHYKD12
60%
40%
3.4
>100 μM


WHYKD13
No Effect @ 2 μM
No Effect @ 2 μM
ND
>100 μM


WHYKD14
No Effect @ 2 μM
No Effect @ 2 μM
ND
>100 μM


WHYKD15
65%
40%
3.6
>100 μM


WHYKD16
No Effect @ 2 μM
No Effect @ 2 μM
ND
>100 μM


WHYKD17
No Effect @ 2 μM
No Effect @ 2 μM
ND
>100 μM


WHYKD18
No Effect @ 2 μM
No Effect @ 2 μM
ND
>100 μM


WHYKD19
55%
35%
3.5
>100 μM


WHYKD20
No Effect @ 2 μM
No Effect @ 2 μM
ND
>100 μM


WHYKD21
No Effect @ 2 μM
No Effect @ 2 μM
ND
>100 μM


WHYKD22
No Effect @ 2 μM
No Effect @ 2 μM
ND
>100 μM


WHYKD23
No Effect @ 2 μM
No Effect @ 2 μM
ND
>100 μM


WHYKD24
30%
15%
ND
>100 μM





ND—not done,


NC—no change













TABLE 17







Biological Testing of WHKD Compounds 30-36












LC50
EC50 (nM)-
EC50 (nM)-



Compound
(mM)
Proteostat
mKate2
TI-mKate2














WHYKD30
>200
2510
1113
180


WHYKD32
>200
1992
1562
128


WHYKD33
>200
8805
637
314


WHYKD35
>200
1295
518
386


WHYKD36
67
383
1044
64





LC50 (50% lethal concentration) was tested using an XTT assay for cell viability. Measurements listed as 200 represent the upper concentration limit used for testing, whereby the viability is >50% at this upper limit.


EC50 (50% reduction) was based on the concentration whereby the levels were 50% lower than the initial readings based on mKate2 fluorescence (tau tag) or Proteostat levels (fluorescent marker of aggregates).


TI (therapeutic index) was based on the ratio of LC50:EC50, with the upper limit being 200 mM













TABLE 18







PLD1 & PLD2 Activity










Proteostat (nM) using
mKate2 (nM) using



pharmacological inhibitor
pharmacological inhibitor
















PLD2/PLD1


PLD2/PLD1


Compound
PLD1
PLD2
ratio
PLD1
PLD2
ratio





WHYKD36
394
604
1.5
1332
2284
1.7





To compare the two isoforms of phospholipase D, samples were treated with either ML298, a PLD2 inhibitor (355 nM) that would yield PLD1 activity or a PLD1 inhibitor (VU0150669, 50 nM) to yield only PLD2 activity.






Example 5

Detection and Results of WHYKD Compounds


A photodiode array (PDA) was used to detect WHYKD8 in mouse brain (FIG. 1). The sample was readily detected with a discrete peak based on time (left) and with a measurable area under the curve (AUC) (inset).


LC3-II levels were measured in primary cortical neurons following 6 hours of treatment with WHYKD1, WHYKD5, or WHYKD1+BafA1 (FIG. 2). The presence of LC3-II is an indication of autophagy.


LC3-II levels were then measured in organotypic slice cultures following 6 hours of treatment with WHYKD1 (FIG. 3, top panel). Other compounds in the WHYKD series produced similar results (FIG. 3, bottom panel). RFP is a tag on the tau protein and also can be probed.


These experiments show that the WHYKD series of compounds can induce autophagy and reduce the aggregated forms of tau as well as its aggresome surrogate p62.


PLD activation converts phospholipids to phosphatidylethanols in the presence of ethanol. This conversion was measured to show that the WHYKD series of compounds activate PLD at 10 μM concentration (FIG. 4) and at 1 μM (FIG. 5). FIPI is a non-competitive inhibitor of PLD activity and was used as a negative control.


All patents, patent applications, and publications cited above are incorporated herein by reference in their entirety as if recited in full herein.


The invention being thus described, it will be obvious that the same may be varied in many ways. Such variations are not to be regarded as a departure from the spirit and scope of the invention and all such modifications are intended to be included within the scope of the following claims.

Claims
  • 1. A compound having the formula (VII):
  • 2. The compound of claim 1, wherein the compound is selected from the group consisting of:
  • 3. A compound having the formula (VIII):
  • 4. The compound of claim 3, wherein the compound is selected from the group consisting of:
  • 5. A compound having the following formula:
  • 6. A pharmaceutically acceptable salt of a compound having the following formula:
  • 7. A compound according to claims 1-4, wherein the compound is a pharmaceutically acceptable salt.
  • 8. A pharmaceutical composition comprising a compound of any one of claim 1-4, or 5 or a pharmaceutically acceptable salt thereof.
  • 9. A method of treating a neurodegenerative disease comprising administering to a subject in need thereof an effective amount of a compound of any one of claim 1-4, 5 or 6, or pharmaceutical composition of claim 8.
  • 10. The method of claim 9, wherein the neurodegenerative disease is a proteinopathy.
  • 11. The method of claim 10, wherein the proteinopathy is a tauopathy.
  • 12. The method of claim 9, wherein the neurodegenerative disease is Alzheimer's disease.
  • 13. A method of enhancing autophagic flux comprising providing to a cell or a protein aggregate an effective amount of a compound of any one of claims 1-4, 5 or 6, or pharmaceutical composition of claim 8.
CROSS-REFERENCE TO RELATED APPLICATIONS

The present Continuation-in-Part (CIP) application claims benefit to International Application Serial No. PCT/US16/055561, filed Oct. 5, 2016, which International Application claims benefit to U.S. Provisional Application Ser. No. 62/237,342, filed Oct. 5, 2015. The entire contents of the above applications are incorporated by reference as if recited in full herein.

US Referenced Citations (89)
Number Name Date Kind
3266990 Lutz et al. Aug 1966 A
3272824 Ebetino et al. Sep 1966 A
3936461 Mortlock et al. Feb 1976 A
4114939 Dreikorn et al. Sep 1978 A
5145843 Arnold et al. Sep 1992 A
5650415 Tang et al. Jul 1997 A
5693652 Takase et al. Dec 1997 A
6002008 Wissner et al. Dec 1999 A
6103728 Tang et al. Aug 2000 A
6143764 Kubo et al. Nov 2000 A
6184225 Thomas et al. Feb 2001 B1
6251912 Wissner et al. Jun 2001 B1
6265410 Bridges et al. Jul 2001 B1
6297258 Wissner et al. Oct 2001 B1
6391874 Cockerill et al. May 2002 B1
6596727 Schaper et al. Jul 2003 B1
6630489 Crawley Oct 2003 B1
6919338 Mortlock et al. Jul 2005 B2
7081461 Mortlock et al. Jul 2006 B1
7135466 Sakai et al. Nov 2006 B2
7141577 Ple Nov 2006 B2
7173135 Hennequin et al. Feb 2007 B2
7173136 Hennequin et al. Feb 2007 B2
7211587 Kubo et al. May 2007 B2
7262201 Hennequin et al. Aug 2007 B1
7268230 Hennequin Sep 2007 B2
7402583 Boyle et al. Jul 2008 B2
7425564 Fujiwara et al. Sep 2008 B2
7432377 Chew et al. Oct 2008 B2
7462623 Ple Dec 2008 B2
7495104 Miwa et al. Feb 2009 B2
7504408 Hennequin et al. Mar 2009 B2
7560558 Shimizu et al. Jul 2009 B2
7479473 Bannen et al. Aug 2009 B2
7598258 Kubo et al. Oct 2009 B2
7601716 Dorsey et al. Oct 2009 B2
7763731 Rockway et al. Jul 2010 B2
7799772 Freyne et al. Sep 2010 B2
7960546 Schroeder et al. Jun 2011 B2
8143276 Yang et al. Mar 2012 B2
8148532 Chen Apr 2012 B2
8212033 Su et al. Jul 2012 B2
8232294 Xi Jul 2012 B2
8349857 Kume et al. Jan 2013 B2
8394786 Freyne et al. Mar 2013 B2
8404697 Solca et al. Mar 2013 B2
8492560 Stokes et al. Jul 2013 B2
8575203 Engelhardt et al. Nov 2013 B2
8618289 Abraham et al. Dec 2013 B2
8642767 Spinelli et al. Feb 2014 B2
8673929 Gao et al. Mar 2014 B2
8853396 Fontana Oct 2014 B2
9169236 Fontana et al. Oct 2015 B2
9353122 Ong et al. May 2016 B2
9382232 Gong et al. Jul 2016 B2
20030092721 Pitts et al. May 2003 A1
20030191308 Hennequin et al. Oct 2003 A1
20050009815 Devita et al. Jan 2005 A1
20050085465 Hennequin Apr 2005 A1
20060069077 Rice et al. Mar 2006 A1
20070027318 Kubo et al. Feb 2007 A1
20080058342 Hennequin Mar 2008 A1
20080096884 Edin et al. Apr 2008 A1
20080207617 Miwa et al. Aug 2008 A1
20080227812 Chen Sep 2008 A1
20080280917 Albrecht et al. Nov 2008 A1
20090053236 Yamamoto Feb 2009 A1
20090069316 Hong et al. Mar 2009 A1
20090131461 Davidson et al. May 2009 A1
20090312313 Shimizu et al. Dec 2009 A1
20100022586 Govek et al. Jan 2010 A1
20100144639 Singer et al. Jun 2010 A1
20100234324 Eggenweiler et al. Sep 2010 A1
20110269758 Xiao et al. Nov 2011 A1
20120129877 Martinez et al. May 2012 A1
20120142929 Patel et al. Jun 2012 A1
20120238587 Lee et al. Sep 2012 A1
20130079342 Dransfield et al. Mar 2013 A1
20130345258 Bury et al. Dec 2013 A1
20140221402 Lu et al. Aug 2014 A1
20140221405 Scarborough et al. Aug 2014 A1
20140275129 Lee et al. Sep 2014 A1
20150057263 Brown et al. Feb 2015 A1
20150329498 Romero et al. Nov 2015 A1
20160060249 Casillas et al. Mar 2016 A1
20160101106 Werner Apr 2016 A1
20160108035 Peng et al. Apr 2016 A1
20160297775 Zhang Oct 2016 A1
20170174703 Wu et al. Jun 2017 A1
Foreign Referenced Citations (62)
Number Date Country
2417955 Jan 2003 CA
1083811 Mar 1994 CN
0326328 Aug 1989 EP
326329 Aug 1989 EP
0326329 Aug 1989 EP
326330 Aug 1989 EP
0414386 Feb 1991 EP
1409481 May 1992 EP
520722 Dec 1992 EP
566226 Oct 1993 EP
635498 Jan 1995 EP
635507 Sep 1999 EP
2268623 Jan 2011 EP
2445886 May 2012 EP
2522658 Nov 2012 EP
3012251 Apr 2016 EP
1990005523 May 1990 WO
1992017452 Oct 1992 WO
1992022533 Dec 1992 WO
9404526 Mar 1994 WO
1994004527 Mar 1994 WO
1996009294 Mar 1996 WO
1996039145 Dec 1996 WO
1997003069 Jan 1997 WO
1998013350 Apr 1998 WO
1998043960 Oct 1998 WO
9931072 Jun 1999 WO
2000068199 Nov 2000 WO
2000068200 Nov 2000 WO
2000068201 Nov 2000 WO
2001021596 Mar 2001 WO
2001046150 Jun 2001 WO
2002018375 Mar 2002 WO
2002020489 Mar 2002 WO
2003047582 Jun 2003 WO
2003047583 Jun 2003 WO
2003047584 Jun 2003 WO
2003047585 Jun 2003 WO
2003048159 Jun 2003 WO
2003053960 Jul 2003 WO
2003055866 Jul 2003 WO
2005058318 Jun 2005 WO
2006108059 Oct 2006 WO
2006121767 Nov 2006 WO
2007055513 May 2007 WO
2008024423 Feb 2008 WO
2009010139 Jan 2009 WO
2009024611 Feb 2009 WO
2009148659 Dec 2009 WO
2010018555 Feb 2010 WO
2010025451 Mar 2010 WO
2011014039 Feb 2011 WO
2011143444 Nov 2011 WO
WO2012090179 Jul 2012 WO
2013012915 Jan 2013 WO
2013074633 May 2013 WO
2014043437 Mar 2014 WO
2015079067 Jun 2015 WO
2015079251 Jun 2015 WO
2015106025 Jul 2015 WO
2015144001 Oct 2015 WO
2015155262 Oct 2015 WO
Non-Patent Literature Citations (57)
Entry
Chemical Reactions, Benha University Thesis, Chapter Synthesis of 4-(3H)-quinazolinones from Anthranilic Acid or its Derivatives.
Pubchem, CID 23631972, Jan. 3, 2008, pp. 1-11. Retrieved from the Internet <URL: https://pubchem.ncbi.nlm.nih.gov/compound/236319721972>; p. 3, formula.
Pubchem, CID 616883, Mar. 27, 2005, pp. 1-14. Retreived from the Internet <URL: https://pubchem.ncbi.nlm.nih.gov/compound/616883>; p. 4, formula.
Pubchem, CID 21002400, Dec. 5, 2007, pp. 1-10. Retreived from the internet <URL: https://pubchem.ncbi.nlm.nih.gov/compound/21002400>; p. 3, formula.
International Search Report and Written Opinion, from the International Searching Authority, dated Mar. 27, 2017.
Byju et al., Therapeutic Potential of Quinazoline and its Derivatives—A Review, International Journal of Institutional Pharmacy and Life Sciences 5(2): Mar.-Apr. 2015.
Ajani et al., Quinazoline Pharmacophore in Therapeutic Medicine, Bangladesh J Pharmacol 2016; 11: 716-733.
Alam et al., A Review: Recent Investigations on Quinazoline Scaffold, International Journal of Advance Research (2015), vol. 3, Issue 12, 1656-1664.
Wang et al., Quinazoline Derivatives: Synthesis and Bioactivities, Chemistry Central Journal 2013, 7:95.
Chandrika et al., Synthesis Leading to Novel 2,4,6 Trisubstituted Quinazoline Derivatives, their Antibacterial and Cytotoxic Activity against THP-1, HL-60 and A375 Cell Lines, Indian Journal of Chemistry, vol. 48B, Jun. 2009, 840-847.
El-Azab et al., Design, Synthesis and Biologica Evaluation of novel Quinazoline Derivatives as Potential Antitumor Agents: Molecular Docking Study, European Journal of Medicinal Chemistry, vol. 45, Issue 9, Sep. 2010, 4188-4198.
Chao et al., Substituted Isoquinolines and Quinazolines as Potential Antiinflammatory Agents. Synthesis and Biological Evaluation of Inhibitors of Tumor Necrosis Factor α, Journal of Medicinal Chemistry, 1999, 42 (19), 3860-3873.
German et al., Use of Gyrase Resistance Mutants to Guide Selection of 8-Methoxy-Quinazoline-2,4-Diones, American Society for Microbiology, vol. 52, No. 11, Nov. 2008, 3915-3921.
Naga Raju et al., Quinazoline: Unique and Versatile Pharmacophore in the field or Cancer, Indo American Journal of Pharmaceutical Sciences, 2015, vol. 2 (4), 827-832.
Asif, Chemical Characteristics, Synthetic Methods, and Biological Potential of Quinazoline and Quinazolinone Derivatives, International Journal of Medicinal Chemistry, vol. 2014, Article ID 395637.
Jafari et al. Quinazolinone and Quinazoline Derivatives: Recent Structures with Potent Antimicrobial and Cytotoxic Activities, Research in Pharmaceutical Sciences, Jan.-Feb. 2016: 11(1): 1-14.
Xu, Synthesis and Antifungal Activity of Novel s-Substituted 6-fluoro-4-alkyl(aryl)thioquinazoline Derivatives, Bioorganic & Medicinal Chemistry 15, Mar. 2007, 3768-3774.
Babu, Synthesis, Characterization and Biological Evaluation of Novel Tri Substituted Quinazoline-isatin Mannich Basses Bearing Morpholine and Biphenyl Moieties, Hetrocyclic Letters, May-Jul. 2015, vol. 5, No. 3, 395-411.
Al-Salahi, Synthesis of Novel 2-Alkoxy(aralkoxy)-4H-[1,2,4]triazolo[1,5-a] quinazolin-5-ones and Derivatives, University of Hamburg, Jan. 23, 2009.
El-Sakka et al., Synthesis and Biological Activity of Nitrogen Heterocycles From Anthranilic Acid Derivative, Oriental Journal of Chemistry, May 6, 2009, vol. 25(2), 287-294.
Prajapati et al., Synthesis and Preliminary in-vitro Cytotoxic Activity of Morpholino Propoxy Quinazoline Derivatives, International Journal of ChemTech Research, Jan.-Mar. 2014, vol. 6, No. 1, 547-555.
Diab et al., Radiation Dosimetric Properties of New Oxa-, Thiadiazole, Triazole, International Journal of Physics and Research, Dec. 2013, vol. 3, Issue 5, 11-20.
Aman et al., QSAR Study of Quinazoline Derivatives as Inhibitor of Epidermal Growth Factor Receptor-Tyrosine Kinase (EGFR-TK), 3rd International Conference on Computation for Science and Technology, Nov. 30, 2014.
Chandrika et al., Quinazoline Derivatives with Potent Anti-Inflammatory and Anti-Allergic Activities, Int. J. Chem. Sci., 2008, 6(3), 1119-1146.
Manjula et al., Medicinal and Biological Significance of Quinazoline: A Highly Important Scaffold for Drug Discovery: A Review, International Journal of Pharma and Bio Sciences, Jan.-Mar. 2011, vol. 2, Issue 1, 780-809.
Connolly, Synthesis of Quinazolinones and Quinazolines, Tetrahedron 61, Jun. 2005, Report No. 737, 10153-10202.
Jantova et al., In Vitro Antibacterial Activity of Ten Series of Substituted Quinazolines, Biologia, Bratislava, 2004, 59/6, 741-752.
Barclay et al., Quinolines as Chemotherapeutic Agents for Leishmaniasis, Griffith University, 2013.
Selvam et al., Quinazoline Marketed Drugs—A Review, Research in Pharmacy, 2011, 1(1), 1-21.
Wan et al., Synthesis, Antiviral Bioactivity of Novel 4-Thioquinazoline Derivatives Containing Chalcone Moiety, Molecules, Jun. 2015, 20, 11861-11874.
El-Hashash et al., Synthesis and Evaluation of New 2,3- and 2,4-Disubstituted Quinazoline Derivatives as Potential Antibacterial and Antifungal Agents, Scholars Research Library, Der Pharma Chemica, 2011, 3(6), 147-159.
Sahu et al., In Silico Screening, Synthesis and In Vitro Evaluation of Some Quinazolinone Derivatives as Dihydrofolate Reductase Inhibitors for Anticancer Activity, International Journal of Pharmacy and Pharmaceutical Sciences, Mar. 2014, vol. 6, Issue 5, 193-199.
Lynch et al., 4-Aminoquinolines as Antimalarial Drugs, Trinity Student Scientific Review vol. II, 2016 Edition, 196-211.
Rudrapal et al., Novel 4-Aminoquinoline Analogues as Antimalarial Agents: A Review, Scholars Research Library, Der Phamacia Letter, 2011, 3(3), 29-36.
Kuldeep et al., Review of Synthesis Schemes of Some Biological Active Quinolines, International Journal of Pharmacotherapy, 2015, 5(2), 75-79.
Odingo et al., Synthesis and Evaluation of the 2,4-Diaminoquinazoline Series as Anti-Tubercular Agents, Biorganic & Medicinal Chemistry 22 (2014) 6965-6979.
Dassonville-Klimpt et al., Mefloquine Derivatives : Synthesis, Mechanisms of Action, Antimicrobial Activities, Universite de Picardie Jule Verne, 2011.
Xie et al., Synthesis of Nitrogen-Containing Heterocycles Using Nitro Compounds as Building Blocks: Part I: Synthesis of 3-Substituted Azepanes. Part II: Synthesis of 1-Azoniapropellanes as Phase Transfer Catalysts, University of Illinois at Urbana-Champaign, 2010.
Viart et al., Synthesis and Structure-Activity Relationship of Liposomal Substrates for Phospholipase A(2), Absracts of Papers of the American Chemical Society, 2011, 242, Medi 344.
Dow et al., Utility of Alkylaminoquinolinyl Methanols as New Antimalarial Drugs, Antimicrobial Agents and Chemotherapy, Dec. 2006, vol. 50, No. 12, 4132-4143.
Marella et al., Quinoline: A Versatile Heterocyclic, King Saud University, Saudi Pharmaceutical Journal, Mar. 2012, 21-12.
Poonan et al., A Review on Biological Activities of Quinoline Derivatives, Journal of Management Inforrmaton Technology and Engineering, Jun. 2016, vol. 2, Issue 1, 1-14.
Yang, Discovery of Selective Histone Deacetylase 6 Inhibitors Using the Quinazoline as the Cap for the Treatment of Cancer, Journal of Medical Chemistry, Oct. 2015, 59(4), 1455-1470.
Duan, Synthesis and Evaluation of (2-(4-Methoxyphenyl)-4-quinolinyl) (2-piperidinyl)methanol (NSC23925) Isomers to Reverse Multidrug Resistance in Cancer, Journal of Medicinal Chemistry, Mar. 2012, 55, 3113-3121.
Pubchem, CID 21002494, Retrieved from the Internet <URL: https://pubchem.ncbi.nlm.nih.gov/compound/21002494#section-Chemical-Vendors>.
Pubchem, CID 44428806, Retrieved from the Internet <URL: https://pubchem.ncbi.nlm.nih.gov/compound/4428806#section=Top>.
Guidechem, 4(3H)-Quinazolinethione,2-methyl-(CAS No. 6484-28-2), Retrieved from the Internet <URL: http://guidechem.com/reference/dic-168980>.
Shah, Synthesis and Biological Evaluation of Certain Nitrogen and Sulfur Based Bioactive Scaffolds, Gujarat University Thesis, Chapter 1, 2014.
ChemFuture Catalog Products 2010, ChemFuture PharmaTech (China) Ltd.
4-(furan-2-ylmethylsulfanyl)quinazoline, Henan Coreychem Co.,Ltd, 2012, Retrieved from the internet <URL: http://coreychem.com/PRODUCTS/Phamaceutical_intermediates/2015/05231/195760.html>.
Pubchem, CID 7160394, Retrieved from the Internet <URL: https://pubchem.ncbi.nlm.nih.gov/compound/7160394#section-Top>.
Pubchem, CID 60329852, Retrieved from the Internet <URL: https://pubchem.ncbi.nlm.nih.gov/compound/60329852#section=2D-Structure>.
Chemspider, 6-Fluoro-4-(tetrahydro-2H-pyran-4-ylsulfanyl)quinazoline, Royal Society of Chemistry, 2015, Retrieved from the internet <URL http://www.chemspider.com/Chemical-Structure.30132867.html?rid=9a2b8938-1827-42ad>.
Harsora, Synthesis, Characterization and Antimicrobial Screening of Some Bio-active Heterocyclic Compounds, Maharaja Krishnakumarsinhji Bhavnagar University Thesis, Jan. 2011, Part I, 26-88.
Kumar, Studies on Diversity Oriented synthesis of Bioactive Compounds, Jawaharlal Nehru University Thesis, Jun. 2009, Chaper 1, 1-27.
PubChem, CID 88934329, retrieved from the Internet <URL: https://pubchem.ncbi.nlm.nih.gov/compound/88934329> (record date, Feb. 13, 2015).
Supplementary European Search Report in European Application No. 16854245.4, dated Mar. 19, 2019.
Related Publications (1)
Number Date Country
20170210759 A1 Jul 2017 US
Provisional Applications (1)
Number Date Country
62237342 Oct 2015 US
Continuation in Parts (1)
Number Date Country
Parent PCT/US2016/055561 Oct 2016 US
Child 15480220 US