This non-provisional application claims priority under 35 U.S.C. § 119 on Patent Application No. TW106107060 filed in Taiwan, Republic of China Mar. 3, 2017, the entire contents of which are hereby incorporated by reference in its entirety.
The present invention relates to an anti-endotoxin polypeptide. In particular, the present invention relates to an anti-endotoxin polypeptide with helicity structure, low hemolytic activity, and high salt resistance.
Antimicrobial peptides (AMPs) have been employed against bacterial infection in the innate defense systems of plants, insects, and animals. AMPs can target and disturb cell membrane, and hence cause the death of bacteria. The membrane lytic mechanism of AMPs makes them potential therapeutics for overcoming the antibiotic resistance.
Lipopolysaccharide (LPS, an endotoxin) is the major outer surface membrane components of gram-negative bacteria. A huge amount of LPS will be released into blood to stimulate immune response and cause sepsis when bacteria death. Human is extremely sensitive to LPS, which can cause a rise in body temperature even a very small amount of LPS (1-5 ng/kg body weight). The fever will be reduced after about 4 hours. If a patient is naturally infected with gram-negative bacteria, the fever will continue until the pathogens are completely killed because the bacteria continue to growth and release LPS. LPS can interact with macrophages to produce cytokines, such as IL-1, IL-6, and TFN-α. These cytokines signal the hypothalamus to increase the thermal set point and cause fever.
If the antibiotic for treating the bacterial infection does not have anti-endotoxin activity, it results in shock in the patients. Therefore, it is a challenge to kill bacteria and inhibit/neutralize endotoxin simultaneously to suppress overstimulation of the immune response. An anti-endotoxin agent for neutralizing LPS and suppress immune response is required.
It is therefore attempted by the applicant to deal with the above situation encountered in the prior art.
In view of the above-mentioned problem, the present invention provides an anti-endotoxin polypeptide.
The anti-endotoxin polypeptide of the invention can target and disturb bacterial outer membrane by electrostatic effect and hydrophobicity. This mechanism is different from small molecule antibiotics. The antimicrobial peptides are deemed to have potential therapeutics for overcoming antibiotic resistance, and may replace antibiotic treatment. However, many antimicrobial peptides only kill bacteria, but do not exhibit the activity to neutralize endotoxin. Thus, how to develop an antimicrobial peptide having one (Carboxy-terminus (C-terminus) or Amino-terminus (N-terminus)) amphipathic terminus and one hydrophobic terminus, and a single amino acid, peptide bound or peptide between the two termini to form the helical turn structures is an important issue. The antimicrobial peptide not only has antibacterial and anti-endotoxin activities, but also reduces over-stimulation of the immune response and inhibits inflammation. The antimicrobial peptide is safe for use and would not cause adverse reactions or side effects on organisms and humans.
The present invention provides an anti-endotoxin polypeptide having the formula (I)
A1-L-C1 (I)
Wherein,
A1 and C1 independently is a short peptide with an α-helix structure in termini of the formula (I), wherein one terminus represents amphipathic and the other represents hydrophobic;
L is an oligopeptide of 1-3 amino acids in length, and L is represented by G(Gly), P(Pro), GP(Gly-Pro), or AGP(Ala-Gly-Pro), and
the hydrophobicity of the hydrophobic terminal in the anti-endotoxin polypeptide is between about 0.425 and 0.765.
In one embodiment, the A1 and C1 independently is a short peptide of 6 to 12 amino acids.
In one embodiment, the A1 is an amphipathic short peptide.
In one embodiment, the C1 is a hydrophobic short peptide.
In one embodiment, the A1 and C1 are selected from a group consisting of KRIVQR (SEQ ID NO:7), KRIVQRIKDFLR (SEQ ID NO:8), IKDFLR (SEQ ID NO:9), RRWWRW (SEQ ID NO:10), and/or RRLVRI (SEQ ID NO:11).
In one embodiment, the A1 comprises KRIVQR (SEQ ID NO:7) or KRIVQRIKDFLR (SEQ ID NO:8).
In one embodiment, the C1 comprises IKDFLR (SEQ ID NO:9), RRWWRW (SEQ ID NO:10), or RRLVRI (SEQ ID NO:11).
In one embodiment, the anti-endotoxin polypeptide comprises aromatic amino acids.
In one embodiment, the anti-endotoxin polypeptide is linked to a lipopolysaccharide (LPS).
In one embodiment, the anti-endotoxin polypeptide has a high salt resistance.
The present invention further provides a novel method for designing an antimicrobial peptide with an anti-endotoxin activity. One terminus (C-terminus or N-terminus) of the antimicrobial peptide has amphipathic, and another terminus has hydrophobic. A bent hinge is located between the two termini to produce the helical turn structures, and regular the anti-endotoxin activity of the antimicrobial peptide. AGP (Ala-Gly-Pro) or a peptide chain is inserted into an antimicrobial peptide to from turning points at both N/C-terminus of the antimicrobial peptide. Thus, the antimicrobial peptide is modified to have the anti-endotoxin activity. The hydrophobic end of the antimicrobial peptide is not limited to an amino acid. For example, it also may be a hydrophobic material (long carbon chains). The length of the antimicrobial peptide is not limited. In the present invention, the minimum size required to achieve this activity is 6 amino acids, and the anti-endotoxin activity can be regulated by adjusting the parameter of hydrophobic end. The modified antimicrobial peptides also have the antibacterial and anti-inflammatory activities.
In one embodiment, the anti-endotoxin polypeptide comprises KRIVQRIKDFLR (SEQ ID NO:1), RRWWRW (SEQ ID NO:2), KRIVQRAGPIKDFLR (SEQ ID NO:3), KRIVQRIKDFLRAGPIKDFLR (SEQ ID NO:4), KRIVQRIKDFLRAGPRRWWRW (SEQ ID NO:5), or KRIVQRIKDFLRAGPRRLVRI (SEQ ID NO:6).
In one embodiment, the hydrophobic terminus in the anti-endotoxin polypeptide is between about 0.425 and 0.765.
The present invention further provide a pharmaceutical composition, comprising anti-endotoxin polypeptide having the formula (I) of A1-L-C1 and a pharmaceutically acceptable carrier, wherein the A1 and C1 independently have α-helix structure, wherein one represents amphipathic and another represents hydrophobic; L is a oligopeptide of 1-3 amino acids in length and L be represented by G(Gly), P(Pro), GP(Gly-Pro), or AGP(Ala-Gly-Pro), and the hydrophobic terminus in the anti-endotoxin polypeptide is between about 0.425 and 0.765.
Detailed description of the invention is given in the following embodiments with reference to the accompanying drawings.
The patent or application file contains at least one drawing executed in color. Copies of this patent or patent application publication with color drawing(s) will be provided by the Office upon request and payment of the necessary fee.
The detailed description provided below in connection with the appended drawings is intended as a description of the present examples and is not intended to represent the only forms in which the present example may be constructed or utilized. The description sets forth the functions of the example and the sequence of steps for constructing and operating the example. However, the same or equivalent functions and sequences may be accomplished by different examples.
The present invention provides an anti-endotoxin polypeptide having the formula (I) A1-L-C1, wherein A1 and C1 independently is a short peptide with an α-helix structure in termini of the formula (I), L is a short peptide 1-3 amino acids in length of G(Gly), P(Pro), GP(Gly-Pro), or AGP(Ala-Gly-Pro).
The term “antimicrobial peptide” refers to the ability of a peptide to kill at least one bacterial species or inhibit growth of a microorganism. The antibacterial activity includes, but is not limited to anti-bacterial, anti-virus, and anti-fungal properties.
In the present invention, A1 and C1 are antimicrobial peptides as well known in the art or the fragments thereof, or A1 and C1 are N-terminus or C-terminus of an antimicrobial peptide. A1 and C1 independently is a short peptide with α-helix, wherein one represents amphipathic and another represents hydrophobic. In other word, if A1 is an amphipathic short peptide then C1 is a hydrophobic short peptide, if A1 is the hydrophobic short peptide then C1 is the amphipathic short peptide. In one embodiment, the antimicrobial peptide or anti-endotoxin polypeptide has about 2 to 100 amino acids, about 5 to 50 amino acids, about 6 to 25 amino acids, about 7 to 20 amino acids, preferably 6 to 12 amino acids.
In one embodiment, A1 and C1 include, but are not limited to KRIVQR (SEQ ID NO:7), KRIVQRIKDFLR (SEQ ID NO:8), IKDFLR (SEQ ID NO:9), RRWWRW (SEQ ID NO:10) and/or RRLVRI (SEQ ID NO:11).
The term “antibacterial activity” refers to the ability of a peptide of the invention to modify a function or metabolic process of a target microorganism, for example so as to at least partially affect replication, vegetative growth, toxin production, survival, viability in a quiescent state, or other attribute. In an embodiment, the term relates to inhibition of growth of a microorganism.
The term “microorganism” herein refers broadly to bacteria, fungi, viruses, and protozoa. In particular, the term is applicable for a microorganism having a cellular or structural component of a lipid bilayer membrane. In one embodiment, the lipid bilayer is a cytoplasmic membrane. The bacteria, fungi, viruses, and protozoa as known in the art are generally encompassed.
The length and integrity of the N-terminus and/or C-terminus of the anti-endotoxin polypeptide are very important for the antibacterial activity, because the α-helical structures of the anti-endotoxin polypeptide display the antibacterial activity.
The anti-endotoxin peptides of the invention include, but are not limited to KRIVQRAGPIKDFLR (SEQ ID NO:3), KRIVQRIKDFLRAGPIKDFLR (SEQ ID NO:4), KRIVQRIKDFLRAGPRRWWRW (SEQ ID NO:5), or KRIVQRIKDFLRAGPRRLVRI (SEQ ID NO:6), preferably KRIVQRIKDFLRAGPRRWWRW (SEQ ID NO:5).
It shall be noted that the anti-endotoxin polypeptides of the invention have hydrophobic and aromatic amino acids. In one embodiment, the hydrophobicity of the hydrophobic terminus in the anti-endotoxin polypeptide is between about 0.425 and 0.765. In another embodiment, the anti-endotoxin polypeptides of the present invention have aromatic amino acids, such as phenylalanine, tryptophan and/or tyrosine.
The anti-endotoxin polypeptide display random structure in solutions or mammalian cells. The amphipathic structure of the anti-endotoxin polypeptide can be bound to LPS through charges to form an α-helix structure. The hydrophobic arm is inserted into LPS by hydrophobic interactions with lipid A region. Therefore, the blocked lipid A region and aggregated LPS vesicles wouldn't cause LPS-induced inflammation.
Additionally, the anti-endotoxin peptides of the present invention have a low hemolytic activity and a high salt resistance, simultaneously.
The present invention further provides a novel method for designing an antimicrobial peptide with an anti-endotoxin activity. One terminus (C-terminus or N-terminus) of the antimicrobial peptide has amphipathic, and another terminus has hydrophobic. A bent hinge is located between the two termini to produce the helical turn structures, and therefore, the anti-endotoxin activity of the polypeptide of the present invention can be regulated. AGP (Ala-Gly-Pro) or a peptide chain is inserted into two adjacent residues of an antimicrobial peptide to form turning points at both N/C-termini of the antimicrobial peptide. Thus, after modification, the antimicrobial peptide without the anti-endotoxin activity is changed to have the anti-endotoxin activity. The hydrophobic end of the antimicrobial peptide is not limited to an amino acid, may be a hydrophobic material (long carbon chains). The length of the antimicrobial peptide is also not limited. In the present invention, the minimum size required to achieve this activity is 6 amino acids, and the anti-endotoxin activity can be regulated by adjusting the parameter of hydrophobic end, which is related to the length of amino acids. The modified antimicrobial peptides also have the antibacterial and anti-inflammatory activities.
The present invention further provides a pharmaceutical composition comprises the anti-endotoxin polypeptide of the present invention and a pharmaceutically acceptable carrier.
The term “pharmaceutically acceptable carrier” as used herein means a pharmaceutically-acceptable material, composition or vehicle, such as a liquid or solid filler, diluent, excipient, solvent or encapsulating material, involved in carrying or transporting a anti-endotoxin polypeptide of the present invention from one location, body fluid, tissue, organ, or portion of the body, to another location, body fluid, tissue, organ, or portion of the body.
Some examples of materials which can serve as pharmaceutically-acceptable carriers include sugars, starches, cellulose, powdered tragacanth, malt, gelatin, talc, excipients, oils, glycols, polyols, esters, agar, buffering agents, alginic acid, pyrogen-free water, isotonic saline, Ringer's solution, ethyl alcohol, phosphate buffer solutions, other non-toxic compatible substances employed in pharmaceutical formulations.
Additional specific embodiments of the present invention include, but are not limited to the following:
Design of Anti-Endotoxin Peptide
In this embodiment, LPS-inactive α-helical peptide KR12 (SEQ ID NO:1) and WR6 (SEQ ID NO:2) were used as N-terminus and C-terminus, respectively to form the anti-endotoxin polypeptide of the present invention. The anti-endotoxin polypeptide of the present invention comprised KR15AGP (SEQ ID NO:3), KR12AGPKR6 (SEQ ID NO:4), KR12AGPWR6 (SEQ ID NO:5), and KR12AGPVR6 (SEQ ID NO:6) as shown in Table 1.
AGP was inserted into two adjacent residues of KR12 to form KR15AGP. KR12AGPKR6, KR12AGPWR6, and KR12AGPVR6 employed KR12 as the amphipathic N-terminal α-helix structure, and three kinds of α-helix structures at C-terminus were used to estimate the hydrophobic effect of the anti-endotoxin (
Antibacterial Activity and Salt Resistance
The antibacterial activities were determined by the standard broth microdilution method of National Committee for Clinical Laboratory Standards with the MH and LYM broth. MH or LYM broth with 50, 100, 200, or 300 mM NaCl (containing 5.4 mM KCl, 5.6 mM Na2HPO4, 0.5 mM MgSO4, and 1.0 mM sodium citrate, 0.4 mg of ZnCl2, 2.0 mg of FeCl3.6H2O, 0.1 mg of CuSO4.5H2O, 0.1 mg of MnSO4.H2O, 0.1 mg of Na2B4O7.10H2O, 700 mg of amino acid mixtures without tryptophan (Clontech), and 20 mg of L-Tryptophan, 2% vitamin mixture (100×, Sigma) and glucose at final concentration of 2%) were used to serially dilute the anti-endotoxin polypeptide of the present invention to obtain anti-endotoxin polypeptide solutions with a concentration ranging from 3,200 to 100 μg/mL.
1 μL of peptide solutions were mixed with 99 μL inoculums (5×105 CFU/mL) in polypropylene 96-well plates, respectively. The turbidity at OD600 nm was determined by ELISA plate reader (Thermo Max, Molecular Devices, Sunnyvale, Calif.). The absorbance of culture medium and inoculum without peptides were used as the negative and positive control, respectively. The minimum inhibitory concentration (MIC) values were converted to a color scale and displayed using the Tree View Program. All peptides were tested in triplicate. Referring to
KR12AGPWR6 displayed superior antibacterial activities against gram-positive and negative bacteria in high salt conditions (MIC=about 2-4 μg/mL). KR12AGPVR6 also showed high activities under low NaCl condition, but lost its activities at 200 mM NaCl. Compared to other bacteria strain, KR12AGPKR6, KR12AGPWR6, and KR12AGPVR6 were more effective to Acinetobacter sp.
Overall, the degree of antibacterial activities and salt resistances of anti-endotoxin polypeptide were KR12AGPWR6>KR12AGPKR6>KR12AGPVR6>KR15AGP.
Binding and Neutralization of Peptide to Endotoxin
The abilities of the anti-endotoxin polypeptides to bind and neutralize LPS were assessed using Limulus Amebocyte Lysate (LAL) assay (Cape Cod Inc, East Falmouth, Mass., USA). 25 μL of different peptide concentration (128, 64, 32, 16, and 8 μg/mL) were mixed with 25 μL CSE (Control Standard Endotoxin) (5EU) in a 96-well plate, and 50 μL of Pyrochrome® reagent was added to wells immediately. The absorbance at 405 nm was measured by microplate reader at 37° C. for 25 minutes.
Referring to
Cytotoxicity Test
In this embodiment, the cytotoxicity was evaluated by MTT assay. J744A.1 cells were seeded in a 96-well plate with 104 cells/100 μL/well and incubated for 24 hours. After removing the medium, 100 μL of fresh medium containing anti-endotoxin polypeptide (2 to 64 μg/mL) was added to the wells. After 24 hours incubation, the fresh medium with 0.5 mg/mL MTT was added and incubated for 3 hours. After the medium/MTT was removed, DMSO was added at 100 μL for dissolving the formazan crystal. Cell survival rate was calculated by measuring the absorbance at 450 nm using Multi-labeled Microplate Reader (VICTOR 3).
Referring to
Peptide-Induced Permeabilization of Large Unilamellar Vesicles
In this embodiment, the large unilamellar vesicles (LUVs) of POPC/LPS (POPC:LPS=12.5:1 mol/mol), POPC/cholesterol (POPC:cholesterol=2:1 mol/mol), and POPC:POPG (POPC:POPG=3:1 mol/mol) were prepared by the extrusion method with Avanti small-volume extrusion apparatus (Avanti Polar Lipid). Calcein-filed LUVs were prepared by calcein-containing buffer (70 mM calcein and 10 mM Tris at pH 7.4). Peptide-induced calcein leakages were measured by Perkin-Elmer luminescence spectrofluorimeter at excitation and emission wavelengths of 496 and 515 nm, respectively. Leakage is expressed as a percentage relative to the total amount of dye released by addition of 100 mg/mL of Triton X-100, which represented 100% leakage (the maximum fluorescence intensity).
The degree of leakage induced by various concentrations of polypeptides was estimated by: % leakage=(F−F0)/(Fr−F0)×100%, wherein the F0 is the initial fluorescence intensity observed without peptide, and Fr is the fluorescence intensity of 100% leakage.
Referring to
Circular Dichroism Spectroscopy
In this embodiment, the circular dichroism (CD) spectra were recorded with an AVIV 202 spectropolarimeter after calibration with d-10-camphorsulfonic acid to determine the secondary structure of the peptides. The peptides were diluted with phosphate buffer to a concentration of 60 mM to 1 mM, and scanned wavelength from 190 to 260 nm.
Referring to
LPS Aggregation
The LPS molecule were dissolved in chloroform:methanol (2:1) then the stock solution was sonicated at 40° C. for 20 minutes and then kept at 4° C. overnight. The stock solution were diluted to 25 μM by using 20 mM sodium phosphate buffer with 150 mM sodium chloride and then at 4° C. overnight for use. Peptide concentration was diluted to 8 or 16 μg/mL. After the LPS solution was interacted with the peptide solution, the particle size and distribution analysis was measured by dynamic light scattering in Malvern Zetasizer ZS (Malvern, UK).
Referring to
Inhibition of Endotoxin-Induced Inflammatory
J744A.1 cells (3×105 cells) were seeded in a 24-well plate and incubated for 24 hours. Cells were washed by PBS and LPS (E. coli 026:B6 (SIGMA, 150 ng/mL)) and the anti-endotoxin polypeptide of the present invention (2-32 μg/mL) were added to the wells. After 24 hours treatment, culture supernatant was harvested and centrifuged at 1,000 rpm for 10 minutes. 50 μL of culture supernatant was mixed with 50 μL Griess reagent (SIGMA) in a 96-well plate and incubated at room temperature for 10 minutes. The absorbance at 540 nm was measured and the NO concentration was calculated. Additionally, the concentration of TNF-α in the culture supernatant was evaluated using ELISA kits (eBiosciences).
Referring to
Mouse Model of Endotoxemia
5-week old male C57BL/6 mice were purchased from National Laboratory Animal Center (Taiwan). Mice were divided into three groups (five in each group) with intraperitoneal (i.p.) injection of (a) 18 mg/kg of body weight E. coli O26:B6 LPS, (b) 18 mg/kg body weight LPS plus 10 mg/kg peptide, and (c) no treatment. Blood was collected via tail vein 1.5 hours after injection. Whole blood was centrifuged at 3,000 rpm at 4° C. for 10 minutes. After 24 hours, all mice were sacrificed. The lungs were removed and fixed in 4% formaldehyde buffer, and deparaffinized in UltraClear buffer (J. K. Baker) and graded ethanol. Histology of lung sections was performed by hematoxylin and eosin (H&E) staining. Tissue images were captured using light microscope (Eclipse E400, Nikon) with digital microscopy camera (AxioCam ICc 5, ZEISS).
Referring to
The present invention provides an anti-endotoxin polypeptide having the formula (I) A1-L-C1, wherein one terminus of the peptide is amphipathic and another terminus is hydrophobic. A bent hinge is located between the two terminuses as “L” of formula (I) to produce the helical turn structures, and therefore, the anti-endotoxin activity of the peptide of the invention can be regulated. As mentioned above, for example, when “L” is AGP, the anti-endotoxin peptides not only have anti-endotoxin activity, but also have anti-bacteria and anti-inflammation activities. Actually, the present invention is not limited to AGP, “L” of formula (I) may be selected from G(Gly), P(Pro), or GP(Gly-Pro). Similar to AGP, all these peptides also have the activities of anti-endotoxin and anti-bacteria, and significantly decrease inflammation, such as the angeiorrhagia due to increased vascular permeability caused by inflammation. Since the test results of G(Gly), P(Pro), or GP(Gly-Pro) are similar to that of AGP, it is not necessary to go into details here.
Although the present invention has been described in considerable detail with reference to certain embodiments thereof, other embodiments are possible. Therefore, the spirit and scope of the appended claims should not be limited to the description of the embodiments contained herein.
It will be apparent to those skilled in the art that various modifications and variations can be made to the embodiments described herein without departing from the spirit and scope of the claimed subject matter. Thus it is intended that the specification cover the modifications and variations of the various embodiments described herein provided such modification and variations come within the scope of the appended claims and their equivalents.
Number | Date | Country | Kind |
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106107060 A | Mar 2017 | TW | national |
Number | Name | Date | Kind |
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20020146406 | Mayo | Oct 2002 | A1 |
Number | Date | Country | |
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20180251492 A1 | Sep 2018 | US |