Bioactive peptide for cell adhesion

Abstract

The invention is directed to a polypeptide derived from domain IV of the extracellular matrix protein perlecan that can selectively adhere cells, nucleic acids encoding the inventive polypeptide, vectors comprising the nucleic acids, devices comprising a scalffold coated with the inventive polypeptide, and methods of adhering cells to a scaffold using the inventive polypeptide.

Description

BACKGROUND OF THE INVENTION

[0003] The invention provides polypeptides derived from the perlecan core protein as coatings for scaffolds, such as implantable tissue scaffolds. The inventive coatings allow strong and selective cell adhesion to the scaffold. For example, the inventive polypeptides can be coated on matrices implanted in damaged tissue such as bone or cartilage to increase the adhesion of desirable biological materials to the repair site.

[0004] The inventive polypeptide is derived from the perlecan core protein. Perlecan is a heparan sulfate proteoglycan (Noonan, D. M. (1991) J. Biol. Chem. (266) 34: 22939-22947). The proteoglycan family contains more than 30 members that perform an assortment of biological functions and are widely distributed in basement membranes. Proteoglycans act as tissue organizers and as biological filters, affect cell growth, and have growth factor activities (Iozzo, R. V. (1998) Annu. Rev. Biochem. 67: 609-652). Perlecan, also known as HSPG2, is a constituent of all basement membranes and plays a role in cell adhesion, angiogenesis, cell proliferation, and tumor development (Sharma, B. (1998) J. Clin. Invest. (102) 8: 1599-1608). Perlecan consists of three heparan sulfate side chains attached to a large core protein consisting of five modular domains.

[0005] Perlecan Domains

[0006] Domain I contains a signal peptide and a unique 172 amino acid sequence that contains the heparan sulfate binding sites. Domain I has no internal repeats and is devoid of cysteine residues. This domain is enriched with acidic amino acid residues that facilitate the heparan sulfate attachment (Iozzo, R., supra). Domain II contains four cysteines and acidic amino acid rich repeats similar to those found in the low-density lipoprotein receptor (LDLr). Domain III contains cysteine-rich globular regions similar to the short arm of the laminin A chain. Domain IV is the largest and most repetitive domain because it contains 14 and 21 immunoglobulin repeats in the murine and human species, respectively (Iozzo, R., supra). Domain V contains three laminin type repeats and four repeats similar to epidermal growth factor. This domain is homologous to the globular terminus of the laminin A chain.

[0007] Rotary shadowing revealed perlecan to be a series of globules separated by rods creating the appearance of beads on a string, hence the name perlecan. Perlecan is derived from the Middle English “perle” meaning pearl and “can” signifying the posttranslational glycosaminoglycan modification (Noonan, D. M., supra).

[0008] Work by Cohen et al. showed that perlecan has multiple sites of transcription initiation, which suggests that the various transcripts observed with perlecan are more likely due to alternative splicing of internal exons than due to differential usage of polyadenylation sites (Cohen, I. (1993) Proc. Nat. Acad. Sci. 90: 10404-10408).

[0009] Cell Adhesion

[0010] Work by SundarRaj et al. showed that purified perlecan promoted the attachment of immortalized rat chondrocytes in vitro (SundarRaj, N. (1995) J. Cell Sci. 108 (Pt 7): 2663-2672). Chakravarti et al. studied an Arginine-Glycine-Aspartic Acid-Serine (“RGDS”) amino acid sequence located in domain III that was associated with cell adhesion (Chakravarti, S. (1995) J. Biol. Chem. (270) 1: 404-409). Chakravarti et al. produced domain III as a recombinant protein and evaluated its cell adhesion activity. Recombinant domain III coated on tissue culture dishes supported adhesion of a mouse mammary tumor cell line in a dose dependent manner. Forty percent of the cells attached at the maximum dose. Furthermore, all of the attachment could be abolished with synthetic RGDS peptide. Chakravarti et al. concluded that the RGDS sequence is the only binding site in their recombinant domain III protein.

[0011] Hayashi et al. studied full-length perlecan and reported a higher percentage attachment of cells than Chakravarti et al. reported with just domain III (Hayashi, K. (1992) J. Cell Biol. 119 (4): 945-959).

[0012] Hopf et al. assessed the protein-protein interaction between domain IV of mouse perlecan and fibronectin, nidogen-1, nidogen-2, laminin-1-nidogen-1 complex, fibulin-2, and collagen IV (Hopf, M (1999) Eur. J. Biochem. 259 (3): 917-925). Hopf et al. created two separate recombinant molecules from domain IV. One consisted of the IG 2-9 modules of domain IV and had a molecular weight of 100 kD (IV-1). The second consisted of the IG modules 10-15 and had a molecular weight of 66 kDa (IV-2). Hopf et al. found that there was strong protein-protein interaction between IV-1 and fibronectin, nidogen-1, nidogen-2 and the laminin-1-nidogen-1 complex, while the IV-2 fragment had a much more restricted protein-protein interaction with weaker binding to fibronectin and fibulin-2.

[0013] Scaffolding for Tissue Repair

[0014] Numerous skeletal and connective-tissue related disorders have been treated with engineered implants. For example, implants made of substrates such as ceramics, metals, polymers, and biological composites have been used to repair bone and tissue. Improved understanding of cellular and molecular events that occur at the interface between tissues and implants is beginning to allow new approaches to implant design. Preferably, implants are designed to elicit specific, clinically-desirable responses from living cells and tissues in a patient's body. For example, it is desirable for osteoblasts to rapidly deposit mineralized matrix on the surface of (or in close apposition to) newly implanted prostheses. The swift deposition of bone stabilizes the prosthesis and minimizes motion-induced damage to surgically traumatized tissue at the implantation site.

[0015] Anchorage-dependent cells (such as osteoblasts) must first adhere to a surface in order to perform subsequent cellular functions (e.g., proliferation, deposition of bone tissue, etc.). Because cell adhesion is needed for subsequent events, methods for promoting cell adhesion are of considerable interest. The effects on cell adhesion of peptides immobilized on the surfaces of substrates have been reported. Substrates have included polymers (Massia et al. (1991) J. Biomed. Natl. 25: 223-242) and dental/orthopedic implant materials such as Cobalt-Chromium-Molybdenum alloy (Mikos et al. (1994) Biomatls. Cell and Drug Delivery 331: 269-274). Adhesion-related peptides that have been attached to substrates have included integrin-binding peptides, such as those that contain the Arginine-Glycine-Aspartic Acid (RGD) sequence. U.S. Pat. No. 6,262,017 “Peptides for Altering Osteoblast Adhesion” issued Jul. 17, 2001 discloses polypeptide coatings for controlling osteoblast adhesion to implants.

[0016] Although it is known that perlecan is involved in cell adhesion, the intact molecule is too large to exploit commercially as a cellular adhesive. Its size does not allow for efficient and cost effective commercial production. The present invention avoids this problem and meets the needs of the art by providing a small molecule with strong and selective cell adhesion properties.

BRIEF SUMMARY OF THE INVENTION

[0017] The invention is directed to a polypeptide of less than 3,700 amino acids, preferably less than 700 amino acids, and still more preferably of less than 100 amino acids that can selectively adhere cells, nucleic acids encoding the inventive polypeptide, vectors comprising the nucleic acids, devices comprising a scaffold coated with the inventive polypeptide, and methods of adhering cells to a scaffold using the inventive polypeptide.

BRIEF DESCRIPTION OF THE DRAWINGS

[0018] FIG. 1 depicts the 10T{fraction (1/2)} cell adhesion at various concentrations of substrates.

[0019] FIGS. 2 and 3 are photographs that show 10T½ cells plated on plastic coated with the polypeptide of SEQ ID NO: 1.

[0020] FIG. 4 is a bar graph depicting cell adhesion for the HES cell line on scaffolding coated with various substrates.

[0021] FIG. 5 is a bar graph depicting cell adhesion for the HS27a cell line on scaffolding coated with various substrates.

[0022] FIG. 6 is a bar graph depicting cell adhesion for the HS5 cell line on scaffolding coated with various substrates.

[0023] FIG. 7 is a bar graph depicting cell adhesion for the PC3 cell line on scaffolding coated with various substrates.

[0024] FIG. 8 is a photomicrograph showing HES cells attached and spreading on substrate coated with the polypeptide of SEQ ID NO:1.

[0025] FIG. 9 is a photomicrograph showing HES cell attachment on a substrate coated with the polypeptide of SEQ ID NO:4.

[0026] FIG. 10 is a photomicrograph showing PC3 cell attachment on a substrate coated with the polypeptide of SEQ ID NO:1.

[0027] FIG. 11 is a photomicrograph showing PC3 cell attachment on a substrate coated with the polypeptide of SEQ ID NO:4.

[0028] FIG. 12 is a photomicrograph showing HS27a cell attachment on a substrate coated with the polypeptide of SEQ ID NO:1.

[0029] FIG. 13 is a photomicrograph showing HS27a cell attachment on a substrate coated with the polypeptide of SEQ ID NO:4.

DETAILED DESCRIPTION

[0030] The present invention concerns a polypeptide derived from perlecan that facilitates cell adhesion. The adhesive polypeptide has the following amino acid sequence: TWSKGGHLRPGIVQSG (SEQ. ID. NO.: 1) and is hereinafter referred to as the adhesive polypeptide. The adhesive polypeptide is derived from domain IV of the perlecan protein. The perlecan domains are disclosed in Noonan D M et al., “The Complete Sequence of Perlecan . . . ”, J. Biol. Chem. 266:34, pp. 22939-47 (Dec. 5, 1991), which is hereby incorporated by reference herein in its entirety.

[0031] Adhesion of cells to scaffolds such as those used in tissue engineering for cartilage and bone repair, stents, or bone prosthetic devices is facilitated by coating the scaffold with the peptides of the invention. The inventive peptide coating supports rapid formation of adhesion plaques or focal adhesions of mesenchymal stem cells. The peptide also may be attached to a solid support, such as a gel column, and used to extract or purify proteins or cells that preferentially bind to the peptide. For example, such a separation may be useful for identifying cell receptors by affinity chromatography.

[0032] Preferably, the scaffold is made of a polymer, a biologically derived material, ceramic, metal, or combinations thereof, that is biologically inert and physiologically compatible with mammalian tissues. The scaffold material preferably does not induce an inflammatory response. The scaffold also preferably is capable of associating with the adhesive peptide at sufficient levels to satisfy the intended objective, e.g., increased cell adhesion at the scaffold. The scaffold preferably can bind the adhesive peptide either covalently or non-covalently, such as by electrostatic charge or hydrophobic or hydrophilic interactions.

[0033] Preferred polymers are polyamides, polypeptides, polyesters, polycarbonates, polyurethanes, polyacetals, polysaccharides, and polyolefins. Specific examples of such polymers include silicone rubber, polyurethane rubber, polyethylene, polyvinyl chloride, poly (hydroxyethyl methacrylate), poly (methyl methacrylate), poly (ethyleneterephthalate), polypropylene, polystyrene, poly (tetrafluoroethylene), polyglycolic acid, cellulose, ethylcellulose, methycellulose, dextran, carboxymethylcellulose, hyaluronic acid, hydroxypropylmethylcellulose, nylon, collagen, and collagen-GAG. Preferred polymers include expanded polytetrafluoroethylene composed of two polymers and having nine billion pores per square inch. Additionally, the scaffold can be a copolymer, composite or blend of the above polymers.

[0034] The polymer may have other materials embedded in it, such as carbon fibers or carbon nanotubes. For example, the polymer may be comprised of carbon fibers embedded in a polyurethane-poly(L-lactide matrix). Additional scaffold materials are disclosed in Sweigart, M. A. (2001) Tissue Engineering 7:2: 111-128, which is hereby incorporated herein by reference in its entirety. Additional scaffold materials are known to those skilled in the art.

[0035] Preferred biologically derived materials are matrices comprised of collagen sponge, cortical bone chips, cancellous bone chips, cortico-cancellose bone chips, hydroxyapatite or like ceramics, bioactive glass, growth factors and demineralized bone, which are imbedded or suspended in a carrier material. The carrier material is preferably a fibrin-containing composition that coagulates, collagen formulations, hydroxylapatite, pleuronic polymers, synthetic or natural polymers, carboxymethylcellulose, gelatin, or combinations thereof. More preferably, the carrier is gelatin derived from human or animal tissue. Other preferred biologically derived materials are mammalian tissues, such as perichondral tissue and periosteal tissue.

[0036] The invention also concerns isolated nucleic acid molecules comprising a nucleotide sequence of less than 11,000 nucleotides in length and preferably of less than 2,100 nucleotides in length and encoding the adhesive polypeptide of the invention or biologically active portions thereof, as well as nucleic acid fragments suitable as primers or hybridization probes for the detection of nucleic acid encoding the adhesive polypeptide (e.g., mRNA). In particularly preferred embodiments, the isolated nucleic acid molecule consists of less than 11,000 nucleotides in length, and preferably less than 2,100 nucleotides and comprises the nucleotide sequence of acatggagcaaagtcgggggacacctacggcctggcatcgtgcaaagcgga (SEQ ID NO:3) (which is the mouse cDNA) or the nucleotide sequence of acatggagcaaagttggagggcacctgcggccaggcattgtgcagagcgga (SEQ ID NO:2) (which is the human cDNA), or a complement of either of these. In other particularly preferred embodiments, the isolated nucleic acid molecule of the invention comprises a nucleotide sequence of less than 11,000 nucleotides in length, and preferably of less than 2,100 nucleotides in length, which encodes naturally occurring allelic variants, genetically altered variants and non-human homologues of the adhesive peptides described herein. Such nucleic acid molecules are identifiable as containing a nucleotide sequence of sixty or less nucleotides that is able to hybridize to or which is at least about 60-65%, preferably at least about 70-75%, more preferably at least about 80-85%, and even more preferably at least about 90-95% or more homologous to the nucleotide sequence shown in SEQ ID NO:2 or SEQ ID NO:3.

[0037] To determine the percent homology of two amino acid sequences or of two nucleic acid sequences, the sequences are aligned for optimal comparison purposes (e.g., gaps can be introduced in the sequence of one polypeptide or nucleic acid for optimal alignment with the other polypeptide or nucleic acid). The amino acid residues or nucleotides at corresponding amino acid positions or nucleotide positions are then compared. When a position in one sequence is occupied by the same amino acid residue or nucleotide as the corresponding position in the other sequence, then the molecules are homologous at that position (i.e., as used herein amino acid or nucleic acid “homology” is equivalent to amino acid or nucleic acid “identity”). The percent homology between the two sequences is a function of the number of identical positions shared by the sequences (i.e., % homology=# of identical positions/total # of positions.times. 100).

[0038] In other embodiments, the nucleic acid is less than 11,000 nucleotides in length, and preferably less than 2,100 nucleotides in length, and encodes a polypeptide that is at least about 70-75%, still more preferably at least about 80-85%, still more preferably at least about 90-95%, and most preferably 100% homologous to the amino acid sequence of SEQ ID NO:1. In another preferred embodiment the nucleic acid molecule is less than 11,000 nucleotides in length and preferably less than 2,100 nucleotides in length and encodes a polypeptide comprising at least 15 contiguous amino acids of SEQ ID NO:1. In addition to naturally-occurring allelic variants of the adhesive polypeptide sequence that may exist in the population, the skilled artisan will further appreciate that changes can be introduced by mutation into the nucleotide sequence of SEQ ID NO:2 or SEQ. ID. NO:3, thereby leading to changes in the amino acid sequence of the encoded adhesive polypeptide, without altering the functional ability of the adhesive polypeptide. For example, nucleotide substitutions leading to amino acid substitutions at “non-essential” amino acid residues can be made in the sequence of SEQ ID NO:2 or SEQ. ID. NO:3. A “non-essential” amino acid residue is a residue that can be altered from the wild-type sequence of the adhesive polypeptide (e.g., the sequence of SEQ ID NO:1) without altering the activity, whereas an “essential” amino acid residue is required for adhesive activity.

[0039] In another embodiment, the nucleic acid molecule is less than 11,000 nucleotides in length, and preferably less than 2,100 nucleotides in length and encodes a polypeptide or portion thereof wherein the polypeptide or portion thereof includes an amino acid sequence which is sufficiently homologous to the amino acid sequence of SEQ ID NO:1, e.g., sufficiently homologous to an amino acid sequence of SEQ ID NO:1 such that the polypeptide or portion thereof maintains an adhesive activity, such as the types of adhesive activity disclosed herein.

[0040] Another aspect of the invention pertains to vectors, e.g., recombinant expression vectors, containing the nucleic acid molecules of the invention and host cells into which such vectors have been introduced. In one embodiment, such a host cell is used to produce an adhesive polypeptide by culturing the host cell in a suitable medium. If desired, the adhesive polypeptide can then be isolated from the medium or the host cell.

[0041] The invention also includes adhesive polypeptides of less than 3,700 amino acids in length and preferably of less than 700 amino acids, still more preferably of less than 100 amino acids, and comprising an amino acid sequence having at least about 70-75%, still more preferably at least about 80-85%, still more preferably at least about 90%, and most preferably 100% homology to the amino acid sequence of SEQ ID NO:1. In another preferred embodiment, the polypeptides have conservative amino acid substitutions at one or more predicted non-essential amino acid residues. A “conservative amino acid substitution” is one in which the amino acid residue is replaced with an amino acid residue having a similar side chain. Families of amino acid residues having similar side chains have been defined in the art. These families include amino acids with basic side chains (e.g., lysine, arginine, histidine), acidic side chains (e.g., aspartic acid, glutamic acid), uncharged polar side chains (e.g., glycine, asparagine, glutamine, serine, threonine, tyrosine, cysteine), non-polar side chains (e.g., alanine, valine, leucine, isoleucine, proline, phenylalanine, methionine, tryptophan), beta-branched side chains (e.g., threonine, valine, isoleucine) and aromatic side chains (e.g., tyrosine, phenylalanine, tryptophan, histidine). Thus, a predicted nonessential amino acid residue in the adhesive polypeptide is preferably replaced with another amino acid residue from the same side chain family. Preferably, the polypeptide maintains the ability to adhere cells, particularly to adhere cells capable of differentiating into connective tissue cells such as bone, cartilage, tendon, ligament and so forth. Preferably, if the polypeptide is naturally occurring, it is isolated for purposes of the invention.

[0042] In one embodiment, the biologically active portion of the adhesive polypeptide of SEQ ID NO:1 includes a domain or motif, preferably a domain or motif which has adhesive activity. Alternatively, the adhesive polypeptide can be of less than 3,700 amino acids in length, and preferably of less than 700 amino acids in length and comprise an amino acid sequence which is encoded by a nucleotide sequence which contains a sequence of about sixty nucleotides or less that is at least about 80-85%, and more preferably at least about 90-95%, and more preferably 100% homologous to the nucleotide sequence of SEQ ID NO:2 or SEQ ID NO:3, such as the allelic variants and non-human and non-mouse homologues of the adhesive polypeptides described herein as well as genetically altered variants generated by recombinant DNA methodologies. It is also preferred that the adhesive polypeptide have one or more of the adhesive activities described herein.

[0043] In another preferred embodiment, the polypeptide comprises the amino acid sequence of SEQ ID NO:1 and has less than 3,700 amino acids, more preferably less than 2,500 amino acids, more preferably less than 700 amino acids, even more preferably less than 500 amino acids, and still more preferably less than 100 amino acids. The polypeptide of the invention may be glycosylated or phosphorylated, such as at the serine or threonine residues. Also preferred is a polypeptide of a molecular weight of less than 100 kDa, preferably of less than 4 kDa, still more preferably of less than 2 kDa, comprised of the polypeptide of SEQ ID NO:1.

[0044] In another preferred embodiment, the inventive polypeptides are selectively adhesive for certain cell types. For example, the polypeptides exhibit cellular specificity for undifferentiated fibroblasts (such as multipotent mouse mesenchymal stem cells, also called 10 T½), and epithelia-derived cell lines (such as human epithelial cells from the uterine wall (“HES”) and prostate cancer cells (“PC3”)).

[0045] The adhesive polypeptide of the invention may be synthesized in various ways, such as by chemical synthesis or recombinant production. It is within the knowledge and skill of one in the art to prepare the polypeptides and nucleic acids of the invention.

[0046] The polypeptides of the invention can be operatively linked to a linker or carrier material. The linker or carrier attaches to the scaffold, allowing increased mobility for the adhesive polypeptide attached to the free end of the linker.

[0047] Preferred linkers include bovine serum albumin (BSA), fibronectin, fragments of fibronectin, collagen, fragments of collagen, and polymers, such as polyamides, polypeptides, polyesters, polycarbonates, polyurethanes, polyacetals, polysaccharides, and polyolefins. Of the polypeptide linkers, preferred are polylysine and polyalanine.

[0048] The adhesive polypeptides may be attached to the linker either covalently or non-covalently. Other linkers are readily apparent to those of skill in the art.

[0049] The adhesive polypeptides of the invention, or portions or fragments thereof, can be used to prepare anti-adhesive polypeptide antibodies. Accordingly, the invention also provides an antigenic peptide which comprises at least 8 amino acid residues of the amino acid sequence shown in SEQ ID NO:1 and encompasses an epitope of the adhesive polypeptide such that an antibody raised against the peptide forms a specific immune complex with the adhesive polypeptide. Preferably, the antigenic peptide comprises at least 10 amino acid residues, more preferably at least 15 amino acid residues, even more preferably 17 amino acid residues. The invention further provides an antibody that specifically binds the adhesive polypeptide. In one embodiment, the antibody is monoclonal. In another embodiment, the antibody is coupled to a detectable substance. In yet another embodiment, the antibody is incorporated into a pharmaceutical composition comprising the antibody and a pharmaceutically acceptable carrier. The antibodies of the invention can be used inter alia to screen for the presence of the adhesive polypeptide in biological samples.

[0050] Another aspect of the invention pertains to methods for detecting the presence of the adhesive polypeptide, or allelic variants thereof, in a biological sample. In a preferred embodiment, the methods involve contacting a biological sample (e.g., a cartilage or smooth muscle cell sample) with a compound or an agent capable of detecting the adhesive polypeptide or the mRNA encoding the adhesive polypeptide such that the presence of the adhesive polypeptide is detected in the biological sample.

[0051] The peptides of the present invention have a variety of uses. In one application, the peptides are attached covalently or electrostatically to scaffolds used for bone repair and reconstruction. The scaffold may be coated with the peptide of the invention and the coated scaffold then contacted with bone cell precursors (mesenchymal stem cells from bone marrow, periosteum, endosteum, etc.) before implantation. Alternatively, the scaffold may be coated with the adhesive polypeptide and then implanted, such that the polypeptide adheres to naturally occurring cells in vivo. The peptide-coated scaffolds also may be used in treating tooth and jaw defects in cases of trauma, bone loss, tooth loss, and gum disease. The peptide-coated scaffolds also are useful in treating cartilage defects such as those which result from rheumatoid arthritis, osteoarthritis and trauma. Cells useful for seeding in such circumstances are chondroblasts and chondrocytes and cartilage cell precursors such as the cell precursors described above in connection with bone. The scaffolds also may be used to repair defects and damage in skin, muscle and other soft tissues such as results from trauma, burns, ulcers (diabetic ulcers, pressure sores, venus, stasis ulcers, etc.). In this case, peptide-coated scaffolds can be seeded with, for example, dermal fibroblasts, keratinocytes, and skeletal muscle cells. Likewise, damage to visceral organs including liver damage, heart attack damage, and damage resulting from intestinal cancer or intestinal ulcer may be treated with the peptide-coated scaffolds of the invention. In these instances, the peptide-coated scaffolds can be seeded with cells such as hepatocytes, cardiac muscle cells, intestinal cells, etc.

[0052] The invention is also directed to devices for implantation in a mammal comprising a scaffold coated with one or more of the inventive polypeptides. Preferably the device comprises a scaffold attached to a linker to which one of the inventive polypeptides has been attached.

[0053] The invention also pertains to in vitro culture of cells with the purpose of creating tissue constructs for repairing tissues and organs in vivo. The scaffolds may be used to promote tissue culture of committed cells and/or differentiation of precursor cells. Thus, the scaffolds of the invention can be used in virtually all instances when it is desirable to provide a substrate for the growth of cells onto or into a tissue replaceable matrix. Scaffolds can also be used with autografts, allografts, and xenografts associated with bone grafts, cartilage grafts, and joint resurfacing implants.

[0054] The terms “peptide”, “polypeptide”, and “protein” are used interchangeably herein.

[0055] As used herein, the term “nucleic acid molecule” is intended to include DNA molecules (e.g., cDNA or genomic DNA) and RNA molecules (e.g., mRNA) and analogs of the DNA or RNA generated using nucleotide analogs.

[0056] The nucleic acid molecule can be single-stranded or double-stranded, but preferably is double-stranded DNA. An “isolated” nucleic acid molecule is one that is separated from other nucleic acid molecules that are present in the natural source of the nucleic acid. Preferably, an “isolated” nucleic acid is free of sequences which naturally flank the nucleic acid (i.e., sequences located at the 5′ and 3′ ends of the nucleic acid) in the genomic DNA of the organism from which the nucleic acid is derived. Moreover, an “isolated” nucleic acid molecule, such as a cDNA molecule, can be substantially free of other cellular material, or culture medium when produced by recombinant techniques, or chemical precursors or other chemicals when chemically synthesized.

[0057] An “isolated” peptide, polypeptide or protein is one that is separated from other polypeptides that are present in the natural source of the polypeptide.

[0058] As used herein, the term “hybridizes under stringent conditions” is intended to describe conditions for hybridization and washing under which nucleotide sequences at least 60% homologous to each other typically remain hybridized to each other. Preferably, the conditions are such that sequences at least about 65%, more preferably at least about 70%, and even more preferably at least about 75% or more homologous to each other typically remain hybridized to each other. Such stringent conditions are known to those skilled in the art and can be found in Current Protocols in Molecular Biology, John Wiley & Sons, N.Y. (1989), 6.3.1-6.3.6. A preferred, non-limiting example of stringent hybridization conditions are hybridization in 6× sodium chloride/sodium citrate (SSC) at about 45° C., followed by washing in 0.2×SSC, 0.1% SDS at 50°-65° C. Preferably, an isolated nucleic acid molecule of the invention that hybridizes under stringent conditions to the complement of the sequence of SEQ ID NO:2 or SEQ ID NO:3 corresponds to a naturally-occurring nucleic acid molecule.

EXAMPLES

Example 1

[0059] FIG. 1 shows the results of studies comparing adhesion of multipotent mouse mesenchymal stem cells, 10T½, to uncoated plastic and to plastic coated with various substrates. Adhesion is measured by the cell proliferation assay CellTiter 96® AQueous Non-Radioactive Cell Proliferation Assay (MTS) sold by Promega, Inc. The CellTiter 96® AQueous Non-Radioactive Cell Proliferation Assay is a calorimetric method for determining the number of viable cells in proliferation, cytotoxicity or chemosensitivity assays. The CellTiter 96® AQueous Assay is composed of solutions of a tetrazolium compound (3-(4,5-dimethylthiazol-2-yl)-5-(3-carboxymethoxyphenyl)-2-(4-sulfophenyl)-2H-tetrazolium, inner salt; MTS) and an electron coupling reagent (phenazine methosulfate) PMS. MTS is bioreduced by cells into a formazan that is soluble in tissue culture medium. The absorbance of the formazan at 490 nm can be measured directly from 96 well assay plates without additional processing. The conversion of MTS into the aqueous soluble formazan is accomplished by dehydrogenase enzymes found in metabolically active cells. The quantity of formazan product as measured by the amount of 490 nm absorbance is directly proportional to the number of living cells in culture.

[0060] No adhesion to uncoated plastic occurred during the 30 minute time period of this study. BSA (bovine serum albumin) and poly-L-lysine (PLL) were used as coating controls. Collagen I, a known adhesive protein substrate for these cells, served as positive control. Six synthetic peptides were conjugated to BSA and the conjugate coated onto plastic and tested for adhesion. A peptide fragment of osteopoentin (“OPN”) that contained an RGD sequence failed to support adhesion. Synthetic peptides of 15-20 amino acids (without heparin sulfate attachment) from perlecan domains I, II, III, IV and V were tested and the results are shown in FIG. 1 under PLN1, PLN2, PLN3, PLN4, and PLN5 respectively. PLN4 represented a polypeptide of the amino acid sequence identified as SEQ ID NO:1. Five synthetic peptides of comparable length in amino acids failed to support adhesion (OPN, PLN1, 2, 3, 5). PLN4 provided an adhesion support comparable to collagen I.

[0061] FIGS. 2 and 3 are photomicrographs showing cellular adhesion of 10 T½ cells to plastic coated with BSA conjugated to the polypeptide of SEQ ID NO:1. The photomicrographs show that adhesion is followed by focal adhesion formation. Cell binding activity to the surface coated with the polypeptide of SEQ ID NO:1 was consistent in repeat experiments and consistently strong.

Example 2

[0062] Cell Adhesion Assay

[0063] Concentrated stocks of rat-tail type I collagen were diluted to designated concentrations in 0.02 N acetic acid and coated overnight on Maxisorp® 96 well plates at room temperature (RT). Poly-L-lysine (PLL), heat-denatured bovine serum albumin (BSA), the peptide of SEQ ID NO:1 conjugated to BSA (indicated in FIGS. 4-7 as “PLN4”) and a scrambled peptide from domain IV of perlecan having the amino acid sequence TGKSVGGSLIWPVRGQH (SEQ ID NO:4) conjugated to BSA (indicated in FIGS. 4-7 as “PLN4*) were diluted in 1× phosphate buffer saline (PBS) and also coated overnight on Maxisorp® 96 well plates at RT. The following day, the plates were washed three times with 1× PBS to remove any residue and blocked with 1% heat-denatured BSA for 1 hr at 37° C. Following blocking, plates were washed once with 1× PBS. Cells from various cell lines were harvested with 0.5 mM EDTA and collected by centrifugation. Pelleted cells were resuspended in serum-free RPMI 1640 and plated at a concentration of 2.5*104 cells per 100 μl. Cells were allowed to attach to the wells for 1 hr at 37° C. Next, the wells were washed once with 1% heat-denatured BSA to remove any unattached cells. Cell adhesion was quantified as in Example 1, using the CellTiter 96® AQueous Assay (MTS) from Promega, Inc. The cells were incubated with MTS for 3 hr at 37° C. Following incubation, an Elisa plate reader measured the optical density.

[0064] Amino acid sequence specificity of the adhesive properties of the polypeptide of SEQ ID NO:1 was confirmed by the observation that cell attachment and spreading did not occur using the scrambled peptide of SEQ ID NO:4 (indicated as PLN4* in FIGS. 4-7). In addition to sequence specificity, adhesion to the peptide of SEQ ID NO:1 was shown to be cell type-specific. FIGS. 4-13 show the results of adhesion tests following the above-described protocol using HES, HS27a, HS5, and PC3 cells. The two epithelia-derived cell lines, HES and PC3, showed the best adhesion and rapid focal adhesion formation of these four cell types. Well differentiated mesenchymal cells such as marrow stromal cells HS27a and HS5 did not bind to the peptide. The best adhesion of the cell types reported herein was shown with 10 T½ cells, reported in FIG. 1 and Example 1.

Claims

1. A polypeptide of less than 3,700 amino acids comprising the amino acid sequence of SEQ ID NO:1.

2. A nucleotide sequence which encodes the polypeptide of claim 1.

3. The polypeptide of claim 1, wherein the polypeptide has less than 700 amino acids.

4. A polypeptide having a molecular weight of less than 100 kDa and comprising the amino acid sequence of SEQ ID NO:1.

5. A nucleic acid encoding the polypeptide of claim 4.

6. A polypeptide of less than 2,100 amino acids and comprising an amino acid sequence that has at least about 80% homology or more to the amino acid sequence of SEQ ID NO:1.

7. The polypeptide of claim 6, wherein the polypeptide has at least 90% homology or more to the amino acid sequence of SEQ ID NO:1.

8. A polypeptide consisting essentially of the amino acid sequence of SEQ ID NO:1.

9. A nucleic acid of less than 11,000 nucleotides in length that encodes a polypeptide having the amino acid sequence of SEQ ID NO:1.

10. The nucleic acid of claim 9, wherein the nucleic acid is less than 2,100 nucleotides in length.

11. A nucleic acid encoding a polypeptide, the polypeptide consisting essentially of the amino acid sequence of SEQ ID NO:1.

12. A nucleic acid-molecule comprising a nucleotide sequence selected from the group consisting of: a) a nucleotide sequence of less than 2,100 nucleotides in length comprising the sequence of SEQ ID NO:3; and b) a nucleotide sequence of less than 2,100 nucleotides in length comprising the sequence of SEQ ID NO:2.

13. A composition comprising the polypeptide of claim 1 and a carrier material.

14. The composition of claim 13 wherein the carrier material is bovine serum albumin, fibronectin, one or more fragments of fibronectin, collagen, one or more fragments of collagen, or a polymer.

15. A device for implantation in a mammal comprising a scaffold coated with the polypeptide of claim 1, the polypeptide optionally attached to the scaffold by a carrier material.

16. The device of claim 15 wherein the scaffold comprises a polymer, a biologically derived material, ceramic, metal, or combinations thereof.

17. A method of adhering cells to a scaffold comprising coating the scaffold with the polypeptide of claim 1 and adding cells to the coated support such that cell adhesion occurs.

18. The method of claim 17, wherein the cells are from epithelia-derived cell lines.