Patent Application
20210349078
This invention generally relates to the chemical analysis of biological material, including the testing involving biospecific ligand binding methods, such as immunological testing, the measuring or testing processes involving enzymes or microorganisms, compositions or test papers, processes for forming such compositions, or condition responsive control in microbiological or enzymological processes.
Synapses are formed, maintained, and repaired through the coordinated actions of three distinct cellular components. These components are the presynaptic and postsynaptic neuronal components and the synaptic glia. The presynaptic and postsynaptic regions can be identified morphologically and targeted molecularly at all stages of life and in a wide variety of conditions. Südhof (2018). By contrast, the identity and spatial distribution of synaptic glia necessary for the formation, differentiation, stability, and function of the synapse are poorly understood. Allen & Eroglu (2017); Ko & Robitaille (2015).
The slow progress in answering fundamental questions about synaptic glia can is primarily due to the lack of molecular tools with which to study them independently of other glial cells. Although several molecular markers recognize subsets of glial cells throughout the nervous system, none of these single markers are specific for synaptic glia. Jäkel & Dimou (2017).
There remains a need in the cell biomedical art for molecular tools to visualize, isolate, and manipulate the glia cells necessary for the formation, stability, and function of synapses.
The invention provides molecular tools to visualize, isolate, and manipulate the glial cells necessary for the formation, stability, and function of the synapse.
In one aspect, the invention provides a unique gene expression signature that distinguishes perisynaptic Schwann cells from all other Schwann cells.
In a first embodiment, the invention provides a method of visualizing the glial cells necessary for the formation, stability, and function of the synapse. Using a combinatorial approach and coëxpressing two different fluorescence proteins, each using a different promoter, a person having ordinary skill in the cell biomedical art can label only those glial cells associated with the neuromuscular synapse. In a second embodiment, the fluorescent proteins are green fluorescent proteins. In a third embodiment, the fluorescent proteins are green fluorescent protein and dsred, a red fluorescent protein variant. In a fourth embodiment, the promoters are NG2 promoter and S100β promoter.
In a fifth embodiment, the invention provides a method of isolating the glial cells necessary for the formation, stability, and function of the synapse. The isolation of these cells can be by any biomedical laboratory technique of cell sorting, such as by flow cytometry. This usefulness of this method of isolating results from the presence of the selectable markers simultaneously in perisynaptic Schwann cells. This method for distinguishing perisynaptic Schwann cells from all other Schwann cells enables the identification of genes expressed either preferentially or specifically in perisynaptic Schwann cells. As described in this specification, the inventors used fluorescence-activated cell sorting (FACS) to separately isolate perisynaptic Schwann cells. Glial cells expressing NG2 and S100β were isolated using fluorescence-activated cell sorting.
In another embodiment, the invention provides a method of isolating the glial cells necessary for the formation, stability, and function of the synapse by selecting for cells expressing one or more of the following genes: Ajap1, Col20a1, FoxD3, Nrxn1, PDGFa, Pdlim4, BChE, and NCAM1. The isolation of these cells can be by any biomedical laboratory technique of cell sorting, such as by flow cytometry.
In another embodiment, the invention provides a method of isolating the glial cells necessary for the formation, stability, and function of the synapse, where the cells express NG2, by selecting for cells further expressing one or more of the following genes: Ajap1, Col20a1, FoxD3, Nrxn1, PDGFa, Pdlim4, BChE, and NCAM1. The isolation of these cells can be by any biomedical laboratory technique of cell sorting, such as by flow cytometry.
In another embodiment, the invention provides a method of isolating the glial cells necessary for the formation, stability, and function of the synapse, where the cells express NG2 and S100β, by selecting for cells further expressing one or more of the following genes: Ajap1, Col20a1, FoxD3, Nrxn1, PDGFa, Pdlim4, BChE, and NCAM1. The isolation of these cells can be by any biomedical laboratory technique of cell sorting, such as by flow cytometry.
In a sixth embodiment, the invention provides a method of manipulating the glial cells necessary for the formation, stability, and function of the synapse. In a seventh embodiment, vectors active in the perisynaptic Schwann cells are used to introduce recombinant vectors that encode genes encoding secreted factors for gene therapy. In an eighth embodiment, vectors active in the perisynaptic Schwann cells are used to introduce recombinant vectors that encode a gene for a therapeutic ribonucleic acid polynucleotide (RNA), to introduce RNAs to treat various conditions that affect the neuromuscular system. In a ninth embodiment, vectors contain genes for detectable markers, e.g., fluorescent proteins, and are transmissible, and thus are useful for neuronal tracing in vivo or in vitro.
In a tenth embodiment, the invention provides an in vitro assay. The assay comprises perisynaptic Schwann cells isolated as described in this specification and cultured in a dish or other in vitro cell culture container. The assay can further include muscle cells, neurons, or both types of cells co-cultured in the dish or another in vitro cell culture container. The assay is useful for high-throughput and high-content drug discovery and testing.
In another embodiment, the invention provides an in vitro assay, where the assay comprises cells that coëxpress NG2 and SB100B, cultured in a dish or other in vitro cell culture container.
In another embodiment, the invention provides an in vitro assay, where the assay comprises cells that coëxpress NG2 and SB100B, cultured in a dish or other in vitro cell culture container, and wherein the cells further express one or more of the following genes: Ajap1, Col20a1, FoxD3, Nrxn1, PDGFa, Pdlim4, BChE, and NCAM1.
In an eleventh embodiment, the invention provides a method for the detection of agents that cause Schwann cells to stop proliferating and differentiate into perisynaptic Schwann cells. This method is useful for discovering and testing molecules to treat Schwannomas and other glial cancers, such as glioblastoma. This method is adaptable by a person having ordinary skill in the cell biomedical art for high-throughput screening (HTS).
The inventors developed molecular markers that enable a person having ordinary skill in the cell biomedical art to visualize, isolate, interrogate the transcriptome, and alter the molecular composition of perisynaptic Schwann cells (PSCs). With these tools, a cell biologist can determine which cellular and molecular determinants are vital for perisynaptic Schwann cell differentiation, maturation, and function at the neuromuscular junction. The invention enables the cell biologist to ascertain the contribution of perisynaptic Schwann cells to neuromuscular junction repair following injury, degeneration during healthy aging and the progression of neuromuscular diseases, such as Amyotrophic Lateral Sclerosis (ALS). This strategy of specifically labeling synaptic glia, using combinations of protein markers uniquely expressed in this cell type, enables an analysis not only perisynaptic Schwann cell function at the neuromuscular junction but also synapse-associated glia throughout the central nervous system (CNS). The inventors observed subsets of astrocytes in the brain that coëxpress both S100β and neuro-glia antigen-2 (NG2).
In another aspect, the invention provides a way to understand how the three cellular constituents of the synapse—neurons, muscle, and glia—communicate each other. The invention provides a tool, a glial bar code, for identifying this component of the synapse. The glial bar code is useful for studies of neuromuscular diseases, such as amyotrophic lateral sclerosis and spinal muscular atrophy.
The patent or application file contains at least one drawing executed in color. Copies of this patent or patent application publication with color drawings will be provided by the Office upon request and payment of the necessary fee.
These and other features, aspects, and advantages of the present invention will become better understood with reference to the following description, appended claims, and accompanying drawings where:
This invention enables the specific isolation of synaptic glia needed to reform the neuromuscular synapse in a dish. Because of this invention, a person having ordinary skill in the biomedical art can make in vitro cell culture assays to discover and test molecules for treating a variety of conditions. Several companies attempted to create neuromuscular synapses in a dish to speed the discovery of treatments for Amyotrophic Lateral Sclerosis (ALS), spinal muscular atrophy, muscular dystrophy, injuries to peripheral nerves and muscles, muscle wasting with aging and cachexia (cancer-related wasting), muscle-grafting for reconstructive surgery, Schwannomas, Charcot-Marie-Tooth disease, Guillain-Barre syndrome, the spectrum of Myasthenia Gravis, and for other insults that affect peripheral nerves and skeletal muscles.
The invention generally applies for discerning the functions of synaptic glia in the development, maintenance, and function of select synapses.
The invention provides a method of visualizing the glial cells necessary for the formation, stability, and function of the synapse. Using a combinatorial approach and coëxpressing two different fluorescence proteins, each using a different promoter, a person having ordinary skill in the biomedical art can label only those glial cells associated with the neuromuscular synapse.
The fluorescent proteins can be selected from the group of green fluorescent proteins (and its variants) and red fluorescent proteins (and its variants). See, Rodriguez et al. (2017).
The promoters can be an NG2 promoter or an S100β promoter. For the NG2 promoter to drive gene expression, see, e.g., Zhu, Bergles, & Nishiyama (2008) and Ampofo et al. (2017). For using S100β promoter to drive gene expression, see, e.g., Zuo et al. (2004).
The invention provides a method of isolating the glial cells necessary for the formation, stability, and function of the synapse. The inventors used a combinatorial gene expression approach to uncover markers specific for perisynaptic Schwann cells. The inventors found that perisynaptic Schwann cells can be identified by a combination of two different glial marker proteins, calcium-binding protein β (S100β) and neuro-glia antigen-2 (NG2). The method of isolating the glial cells. Other methods of cell sorting can be used instead for isolating the glial cells necessary for the formation, stability, and function of the synapse. There are three main methods used for cell sorting: single-cell sorting, fluorescent activated cell sorting, and magnetic-activated cell sorting.
The invention provides a method of manipulating the glial cells necessary for the formation, stability, and function of the synapse. Vectors active in the perisynaptic Schwann cells can introduce recombinant genes encoding secreted factors for gene therapy. A person having ordinary skill in the biomedical art can use any of several viral vector systems active in the perisynaptic Schwann cells, including those based on herpes simplex virus, adenovirus, adeno-associated virus, lentivirus, and Moloney leukemia virus can be used. See, Ruitenberg et al., From Bench to Bedside (Academic Press, 2006), pages 273-288. The vectors can be used instead to introduce recombinant vectors that encode a gene for a therapeutic ribonucleic acid polynucleotide (RNA). Treatments that target RNA or deliver it to cells fall into three broad categories, with hybrid approaches also emerging. Deweerdt (2019). To introduce RNAs to treat various conditions that affect the neuromuscular system, vectors that contain genes for detectable markers, e.g., fluorescent proteins, can be used for neuronal tracing in vivo or in vitro.
The assay comprises perisynaptic Schwann cells isolated as described in this specification and cultured in a dish or other in vitro cell culture container. The assay can further comprise muscle cells, neurons, or both types of cells co-cultured in the dish or another in vitro cell culture container. Alternatively, the cultured cells are cells that coëxpress NG2 and S100β, as described in this specification.
Method for the Discovery of Agents that Cause Schwann Cells to Stop Proliferating and Differentiate into Perisynaptic Schwann Cells
The assay is useful for high-throughput and high-content drug discovery and testing. The assay can be used for a method for the discovery of agents that cause Schwann cells to stop proliferating and differentiate into perisynaptic Schwann cells. This ability has implications for discovering and testing molecules to treat Schwannomas and other glial cancers, such as glioblastoma.
For convenience, the meaning of some terms and phrases used in the specification, examples, and appended claims, are listed below. Unless stated otherwise or implicit from context, these terms and phrases have the meanings below. These definitions are to aid in describing particular embodiments and are not intended to limit the claimed invention. Unless otherwise defined, all technical and scientific terms have the same meaning as commonly understood by a person having ordinary skill in the art to which this invention belongs. For any apparent discrepancy between the meaning of a term in the art and a definition provided in this specification, the meaning provided in this specification shall prevail.
Agent means a composition of matter not usually present or not present at the levels administered to a cell, tissue, or subject. An agent can be selected from the group consisting of polynucleotides, polypeptides, and small molecules. A library of agents is a starting part for high throughput screening.
Comprises and Comprising shall be interpreted as referring to elements, components, or steps in a non-exclusive manner, indicating that the referenced elements, components, or steps can be present, used, or combined with other elements, components, or steps. The singular terms A, An, and The include plural referents unless context indicates otherwise. Similarly, the word Or should cover And unless the context indicates otherwise. The abbreviation E.g. is used to indicate a non-limiting example and is synonymous with the term: for example.
dsRed is a variant of red fluorescent protein (RFP), a fluorophore originally isolated from Discosoma (hence the name DsRed). Other variants are now available that fluoresce orange, red, and far-red. Different variants of red fluorescent protein can be used in this invention, including mFruits (mCherry, mOrange, mRaspberry), mKO, TagRFP, mKate, mRuby, FusionRed, mScarlet, and DsRed-Express.
Flow Cytometry is a biomedical laboratory technique used to detect and measure the physical and chemical characteristics of a population of cells or particles. There are three major methods used for cell sorting: single-cell sorting, fluorescent activated cell sorting, and magnetic-activated cell sorting. The flow cytometry technology has applications in many fields, including molecular biology, pathology, immunology, virology, plant biology, and marine biology. Flow cytometry is routinely used in basic research, clinical practice, and clinical trials.
Fluorescence-Activated Cell Sorting (FACS) is a form of flow cytometry that sorts cells according to fluorescent markers in the cell. FACS is useful as a biomedical laboratory technique for establishing cell lines carrying a transgene, enriching for cells in a specific cell cycle phase, or studying the transcriptome, or genome, or proteome, of a whole population on a single-cell level. Fluorescence-activated cell sorting (FACS) can be performed with a Sony SH800 Cell Sorter (Sony Biotechnology, San Jose, Calif., USA). Sorting gates can be set at the lowest fluorescence threshold at which the sorted cell population was 100% pure and confirmed with dsRed and GFP qPCR. See
GFP (Green Fluorescent Protein) is a protein from the jellyfish Aequorea victoria that naturally exhibits bright green fluorescence when exposed to light in the blue to ultraviolet range. GFP is an excellent tool in the biomedical art because of its ability to form an internal chromophore requiring no accessory cofactors, gene products, enzymes, or substrates other than molecular oxygen. GFP gene expression is a reporter of expression, which demonstrates a proof of concept that a gene can be expressed throughout an organism, in selected organs, or cells of interest. GFP can be introduced into animals or other species through transgenic techniques and maintained in their genome and that of their offspring. The term GFP also includes similar fluorescent proteins from other cnidarians, such as the sea pansy (Renilla reniformis). Many variants of GFP known in the biomedical art fluoresce in many other colors, including blue fluorescent protein (EBFP, EBFP2, Azurite, mKalama1), cyan fluorescent protein (ECFP, Cerulean, CyPet, mTurquoise2), and yellow fluorescent protein derivatives (YFP, Citrine, Venus, YPet). BFP derivatives (except mKalama1) contain the Y66H substitution. Variants such as yellow fluorescent protein (YFP) and cyan fluorescent protein (CFP) were discovered in cnidarian species.
High-Throughput Screening (HTS) is a method for scientific experimentation especially used in drug discovery and relevant to the fields of biology and chemistry. Using robotics, data processing/control software, liquid handling devices, and sensitive detectors, high-throughput screening allows a researcher to quickly conduct millions of chemical, genetic, or pharmacological tests. Through this process, a person having ordinary skill in the biomedical art can rapidly identify active compounds, antibodies, or genes that modulate a particular biomolecular pathway. The results provide starting points for drug design and for understanding the noninteraction or function of a particular location.
NG2 is neuron-glial antigen 2 (NG2), also known as chondroitin sulfate proteoglycan 4 or melanoma-associated chondroitin sulfate proteoglycan (MCSP) has the biomedical art-recognized meaning of a chondroitin sulfate proteoglycan that, in humans, is encoded by the CSPG4 gene. NG2 is a marker protein of oligodendrocyte progenitor cells (OPCs). Nishiyama et al., The Journal of Cell Biology, 114 (2), 359-71 (July 1991). NG2 is present in subsets of Schwann cells besides astrocytes, oligodendrocytes, pericytes, and endothelial cells. Dimou & Gallo, GLIA, vol. 63 1429-1451 (2015).
Perisynaptic Schwann cells (PSCs, also known as terminal Schwann cells or teloglia) are specialized, non-myelinating, synaptic glial cells of the peripheral nervous system (PNS) found at neuromuscular junctions (NMJ). Perisynaptic Schwann cells function in synaptic transmission, synaptogenesis, and nerve regeneration. See Armati, The Biology of Schwann Cells (Cambridge University Press, 2007). They participate in synapse development, function, maintenance, and repair. Perisynaptic Schwann cells of the neuromuscular junction can be readily identified by their unique morphology and presence at the synapse. Ko & Robitaille, Cold Spring Harb. Perspect. Biol., 7 (2015). The study of perisynaptic Schwann cells has relied on an anatomy-based approach, because the identities of cell-specific perisynaptic Schwann cell molecular markers remain elusive. This limited approach has precluded the ability to isolate and genetically manipulate perisynaptic Schwann cells in a cell specific manner.
S100β (S100 calcium-binding protein β) has the biomedical art-recognized meaning of a member of the S-100 protein family. S100β is glial-specific and is expressed primarily by astrocytes, but not all astrocytes express S100β. S100β is present in all Schwann cells. For using S100β promoter to drive gene expression, see, e.g., Zuo et al., The Journal of Neuroscience, 24(49), 10999-11009 (Dec. 8, 2004).
The Glial Cells Necessary for the Formation, Stability, and Function of the Neuromuscular Junction, are known in the biomedical art as perisynaptic Schwann cells (PSCs) at a peripheral synapse.
Neuronal Tracing or Neuron Reconstruction is a biomedical technique used to determine the pathway of the neurites or neuronal processes, the axons and dendrites, of a neuron. From a sample preparation viewpoint, neuronal tracing can be some of the following: anterograde tracing for labeling from the cell body to synapse; retrograde tracing for labeling from the synapse to cell body; viral neuronal tracing for a technique which can label in either direction; manual tracing of neuronal imagery; and other genetic neuron labeling techniques.
Neuromuscular Junction (NMJ) has the biomedical art-recognized meaning of a tripartite synapse comprised of an α-motor neuron (the presynapse), extrafusal muscle fiber (the postsynapse), and specialized synaptic glia called perisynaptic Schwann cells (PSCs) or terminal Schwann cells. Due to its large size and accessibility, extensive research of the neuromuscular junction has been essential to the discovery of the fundamental mechanisms that govern synaptic function, including the concepts of neurotransmitter release, quantal transmission, and active zones, among others.
Guidance from Materials and Methods
A person having ordinary skill in the biomedical art can use these materials and methods as guidance to predictable results when making and using the invention:
Mice. SOD1G93A98 (see Gurney et al. (1994)), S100β-GFP (B6;D2-Tg(S100β-EGFP)1Wjt/J) (see Zuo et al. (2004)) and NG2-dsRed mice (Tg(Cspg4-DsRed.T1)1Akik/J) (see Zhu, Bergles, & Nishiyama (2008)) were obtained from Jackson Labs (Bar Harbor, Me., USA) and crossed to generate S100β-GFP;NG2-dsRed mice. Offspring were genotyped using Zeiss LSM900 to check for fluorescent labels. SOD1G93A mice were crossed with S100β-GFP;NG2-dsRed mice to generate S100β-GFP;NG2-dsRed;SOD1G93A mice. Postnatal mice older than nine days of age were anesthetized and immediately perfused with 4% paraformaldehyde (PFA) overnight. Pups were anesthetized by isoflurane and euthanized by cervical dislocation before muscle dissociation. Adult mice were anesthetized using CO2 and then perfused transcardially with ten ml of 0.1 M phosphate-buffered saline (PBS), followed by twenty-five ml of ice-cold 4% PFA in 0.1 M phosphate-buffered saline (pH 7.4). All experiments were carried out under NIH guidelines and animal protocols approved by the Brown University and Virginia Tech Institutional Animal Care and Use Committee.
Fibular nerve crush. Adult S100β-GFP;NG2-dsRed mice were anesthetized with a mixture of ketamine (100 mg/kg) and xylazine (10 mg/kg) delivered intraperitoneally. The fibular nerve was crushed at its intersection with the lateral tendon of the gastrocnemius muscle using fine forceps, as described by Dalkin et al. (2016). Mice were monitored for two hours after surgery and administered buprenorphine (0.05-0.010 mg/kg) at twelve-hour intervals during recovery.
Immunohistochemistry and neuromuscular junction visualization. For neuro-glia antigen-2 (NG2) immunohistochemistry (IHC), muscles were incubated in blocking buffer (5% lamb serum, 3% BSA, 0.5% Triton X-100 in phosphate-buffered saline) at room temperature for two hours, incubated with anti-NG2 antibody (commercially available Millipore Sigma, St. Louis, Mo., USA) diluted at 1:250 in blocking buffer overnight at 4° C., washed three times with 0.1M phosphate-buffered saline for five minutes. Muscles were then incubated with 1:1000 Alexa Fluor-488 conjugated anti-guinea pig antibody (A-11008, Invitrogen, Carlsbad, Calif., USA) and 1:1000 Alexa Fluor-555 conjugated α-bungarotoxin (fBTX; Invitrogen, Carlsbad, Calif., USA, B35451) in blocking buffer for two hours at room temperature and washed there times with 0.1M phosphate-buffered saline for five minutes. For all other neuromuscular junction visualization, muscles were incubated in Alexa Fluor-647 conjugated α-bungarotoxin (fBTX; Invitrogen, Carlsbad, Calif., USA, B35450) at 1:1000 and 4′,6-Diamidino-2-Phenylindole, Dihydrochloride (DAPI; D1306, ThermoFisher, Waltham, Mass., USA) at 1:1000 in 0.1M phosphate-buffered saline at 4° C. overnight. Muscles were then washed with 0.1M phosphate-buffered saline three times for five minutes each. Muscles were whole mounted using Vectashield (H-1000, Vector Labs, Burlingame, Calif., USA) and 24×50-1.5 cover glass (ThermoFisher, Waltham, Mass., USA).
Confocal microscopy of perisynaptic Schwann cells and neuromuscular junctions. A person having ordinary skill in the biomedical art can take images with a Zeiss LSM700, Zeiss LSM 710, or Zeiss LSM 900 confocal light microscope (Carl Zeiss, Jena, Germany) with a 20× air objective (0.8 numerical aperture), 40× oil immersion objective (1.3 numerical aperture), or 63× oil immersion objective (1.4 numerical aperture) using the Zeiss Zen Black software. Optical slices within the z-stack were taken at 1.00 μm or 2.00 μm intervals. High-resolution images were acquired using the Zeiss LSM 900 with Airyscan under the 63× oil immersion objective in super-resolution mode. Optical slices within the z-stack were 0.13 μm with a frame size of 2210×2210 pixels. Images were collapsed into a two-dimensional maximum intensity projection for analysis.
Image analysis. Neuromuscular junction size: To quantify the area of neuromuscular junctions, the area of the region occupied by nAChRs, labeled by fBTX, can be measured using ImageJ software. At least 100 nAChRs were analyzed for several fragments, individual nicotinic acetylcholine receptor (nAChR) clusters, from each muscle to represent a single mouse. At least three animals per age group were analyzed to generate the described data.
Cells associated with neuromuscular junctions: Cell bodies were visualized via GFP or dsRed signal or both. The cell bodies were confirmed as being cell bodies by a DAPI+ nucleus. The area of each cell body was measured by tracing the outline of the entire cell body using the freehand tool in ImageJ. To quantify the number of cells associated with neuromuscular junctions, the number of cell bodies directly adjacent to each neuromuscular junction was counted. Every cell that overlapped with or directly abutted the fBTX signal was considered adjacent to the neuromuscular junction. At least three animals per age group were analyzed to generate the represented data. Cells were examined in at least 100 neuromuscular junctions from each muscle to represent an individual mouse.
The spacing of perisynaptic Schwann cells at neuromuscular junctions: A person having ordinary skill in the biomedical art can identify neuromuscular junctions via fBTX signal. Perisynaptic Schwann cells were identified by the colocalization of GFP, dsRed, and DAPI signal besides their location at neuromuscular junctions. The area of each perisynaptic Schwann cell and the neuromuscular junction was measured. The linear distance from the center of each perisynaptic Schwann cell soma to the center of the nearest perisynaptic Schwann cell soma at a single neuromuscular junction was measured. The distances were then separated into five μm bins and plotted in a histogram. All linear measurements were made using the line tool in the ImageJ software. At least 100 neuromuscular junctions were analyzed from each muscle to represent an individual mouse.
Muscle dissociation and fluorescence-activated cell sorting. Diaphragm, pectoralis, forelimb and hindlimb muscles were collected from p15-p21 S100β-GFP;NG2-dsRed mice. After removal of connective tissue and fat, muscles were cut into five mm2 pieces with forceps and digested in two mg/mL collagenase II (Worthington Chemicals, Lakewood, N.J., USA) for one hour at 37° C. Muscles were further dissociated by mechanical trituration in Dulbecco's modified eagle medium (Life Technologies, Carlsbad, Calif., USA) containing 10% horse serum (Life Technologies, Carlsbad, Calif., USA) and passed through a 40 μm filter to generate a single-cell suspension. Excess debris was removed from the suspension by centrifugation in 4% BSA followed by second centrifugation in 40% Optiprep solution (Sigma-Aldrich, St. Louis, Mo., USA) from which the interphase was collected. Cells were diluted in FACS buffer containing 1 mM EDTA, 25 mM Hepes, 1% heat-inactivated fetal bovine serum (Life Technologies, Carlsbad, Calif., USA), in Ca2+/Mg2+ free 1× Dulbecco's phosphate-buffered saline (Life Technologies, Carlsbad, Calif., USA).
FACS can be performed with a Sony SH800 Cell Sorter (Sony Biotechnology, San Jose, Calif., USA). Representative fluorescence intensity gates for sorting of S100β-GFP+, NG2-dsRed+ and S100β-GFP+;NG2-dsRed+ cells are provided in
RNA-seq and qPCR. RNA was isolated from S100β-GFP+, NG2-dsRed+, or S100β-GFP+/NG2-dsRed+ cells following fluorescence-activated cell sorting (FACS) with the PicoPure RNA Isolation Kit (ThermoFisher, Waltham, Mass., USA). The maximum number of cells that could be collected by FACS following dissociation of muscles collected from one mouse was a single replicate. On average, a single replicate consisted of 7,500 cells. Genewiz performed RNA seq on twelve replicates per cell type. Following sequencing, data were trimmed for both adaptor and quality using a combination of ea-utils and Btrim. Shapiro et al. (2007); Peng et al. (2010). Sequencing reads were aligned to the genome using Tophat2/HiSat223 Sequencing reads were counted via HTSeq. QC summary statistics were examined to identify any problematic samples (e.g., total read counts, quality and base composition profiles (+/− trimming), raw fastq formatted data files, aligned files (bam and text file containing sample alignment statistics), and count files (HTSeq text files). Following successful alignment, mRNA differential expression was determined using contrasts of and tested for significance using the Benjamini-Hochberg corrected Wald Test in the R-package DESeq225. Failed samples were identified by visual inspection of pairs plots and removed from further analysis resulting in the following number of replicates for each cell type: NG2-dsRed+, 10; S100β-GFP+, 7; NG2-dsRed+/S100β-GFP+, 9. Functional and pathway analysis was performed using Ingenuity Pathway Analysis (QIAGEN Inc.). Confirmation of expression of genes identified by RNA-seq was performed on six additional replicates of each cell type using quantitative reverse transcriptase PCR (qPCR). Reverse transcription was performed with iScript (Bio-Rad, Hercules, Calif.). The reverse transcription step was followed by a preamplification PCR step with SsoAdvanced PreAmp Supermix (Bio-Rad) pSrior to qPCR using iTAQ SYBR Green and a CFX Connect Real-Time PCR System (Bio-Rad). Relative expression was normalized to 18S using the 2−ΔΔCT method.
Statistics. A person having ordinary skill in the biomedical art can use unpaired t-test or one-way ANOVA with Bonferroni post hoc analysis for statistical evaluation. The data are expressed as the mean±standard error (SE), and p<0.05 was considered statistically significant. The number of replicates is RNA seq, 7-10 replicates; qPCR, six replicates; all other analyses, three replicates. Statistical analyses were performed using GraphPad Prism8 and R. The data values and p-values are reported within this specification.
RNA-seq and qPCR methods: RNA was isolated from S100β-GFP+, NG2-dsRed+, or S100β-GFP+/NG2-dsRed+ cells following FACS with the PicoPure RNA Isolation Kit (ThermoFisher). The maximum number of cells that could be collected by FACS following dissociation of muscles collected from one mouse was a single replicate. On average, a single replicate consisted of 7,500 cells. RNA seq was performed by Genewiz on 12 replicates per cell type.
After sequencing, data can be trimmed for both adaptor and quality using a combination of ea-utils and Btrim (see Aronesty (2013); Kong (2011)). Sequencing reads were aligned to the genome using HiSat2 (see Kim et al, (2019)) and counted via HTSeq (see Anders et al. (2015)). QC summary statistics can be examined to identify any problematic samples (e.g. total read counts, quality and base composition profiles (+/− trimming), raw fastq formatted data files, aligned files (bam and text file containing sample alignment statistics), and count files (HTSeq text files).
After successful alignment, mRNA differential expression can be determined using contrasts of and tested for significance using the Benjamini-Hochberg corrected Wald Test in the R-package DESeq2 (see Love et al. (2014)). Failed samples were identified by visual inspection of pairs plots and removed from further analysis resulting in the following number of replicates for each cell type: NG2-dsRed+, 10; S100β-GFP+, 7; NG2-dsRed+;S100β-GFP+, 9. Functional and pathway analysis was performed using Ingenuity Pathway Analysis (QIAGEN Inc. Confirmation of expression of genes identified by RNA-seq was performed on 6 additional replicates of each cell type using quantitative reverse transcriptase PCR (qPCR). Reverse transcription was performed with iScript (Bio-Rad, Hercules, Calif.) and was followed by a preamplification PCR step with SsoAdvanced PreAmp Supermix (Bio-Rad) before qPCR using iTAQ SYBR Green and a CFX Connect Real Time PCR System (Bio-Rad). Relative expression was normalized to 18S using the 2−ΔΔCT method.
TABLE 1 lists the primers used for cDNA preamplification and qPCR.
The following EXAMPLES are provided to illustrate the invention and should not be considered to limit its scope.
The inventors explored the possibility that synaptic glia can be distinguished by unique combinations of glial cell markers, determined by a cell-specific pattern of gene expression. Synaptic glia of both the central (CNS) and peripheral (PNS) nervous systems are generally thought in the biomedical art to provide structural, functional, and trophic support to the synapse. The inability to selectively visualize and target perisynaptic Schwann cells remains an obstacle to understanding the cellular and molecular rules that govern their differentiation and function at neuromuscular junctions during development, following injury, in old age, and diseases, such as ALS.
To facilitate visualization of perisynaptic Schwann cells, the inventors created a transgenic mouse line (called S100β-GFP;NG2-dsRed; see
The inventors found a select subset of glia specifically at the neuromuscular junction-positive for both S100β-GFP+ and NG2-dsRed+ (yellow cells in
Thus, the inventors discovered a unique combination of markers with which to readily identify and study the synaptic glia of the neuromuscular junction in a manner previously impossible.
To determine the time when perisynaptic Schwann cells acquire specific characteristics during development, the inventors determined the earliest time point at which both S100β-GFP and NG2-dsRed were coëxpressed in perisynaptic Schwann cells. The inventors examined neuromuscular junctions in the extensor digitorum longus muscle of S100β-GFP;NG2-dsRed mice at several embryonic (E) and postnatal (P) stages. See Zhu, Bergles, & Nishiyama (2008). This analysis revealed that neuromuscular junctions associate exclusively with S100β-GFP+ cells at least until E18. See
To confirm that dsRed expression from the NG2 promoter denotes the temporal and spatial transcriptional control of the NG2 gene, the inventors found NG2 protein present at postnatal but not embryonic neuromuscular junctions. See
Previous studies relied solely on a combination of anatomical location and Schwann cell markers to make inferences about the number and spatial arrangement of perisynaptic Schwann cells at neuromuscular junctions. See Love & Thompson (1998); and Brill et al. (2013). These studies could miss important relationships between perisynaptic Schwann cells and the neuromuscular junction, particularly early in development, when perisynaptic Schwann cell appearance could not be easily discerned. Monk et al. (2015).
The inventors generated color and grayscale photographic images of perisynaptic Schwann cells at (A) E15, (B) E18, (C) P0, (D) P6, (E) P9, (F) P21, and (G) adult. The inventors also generated photographic images of cells at neuromuscular junctions express neuro-glia antigen-2 (NG2) in adults. The immunohistochemical labeling of neuro-glia antigen-2 (NG2) revealed that GFP+ cells at neuromuscular junctions do not express neuro-glia antigen-2 (NG2) in E18 mice. GFP+ cells at neuromuscular junctions do express neuro-glia antigen-2 (NG2) in adult mice.
The inventors reexamined the number of perisynaptic Schwann cells at developing and adult neuromuscular junctions in the extensor digitorum longus muscle of S100β-GFP;NG2-dsRed mice. The inventors found that the number of perisynaptic Schwann cells rapidly increased from P0 to P9. See
A closer examination by the inventors revealed that the number of perisynaptic Schwann cells varies across neuromuscular junctions of different sizes and in different muscle types. Their density remains unchanged. See
This method for distinguishing perisynaptic Schwann cells from all other Schwann cells enables the identification of genes either preferentially or specifically expressed in perisynaptic Schwann cells. The inventors used fluorescence-activated cell sorting (FACS) to separately isolate perisynaptic Schwann cells, single-labeled S100β-GFP+ Schwann cells, and single-labeled NG2-dsRed+ cells from juvenile S100β-GFP;NG2-dsRed transgenic mice. See
The inventors found 567 genes enriched in perisynaptic Schwann cells not previously recognized to be associated with perisynaptic Schwann cells, glial cells, or synapses using Ingenuity Pathway Analysis (IPA). See TABLE 3. Many of these genes encoded secreted and transmembrane proteins. See
TABLE 3 lists perisynaptic Schwann cell-enriched genes. The inventors identified these listed genes in RNA seq analyses with a minimum copy count of five in perisynaptic Schwann cells. The listed genes also display at least a four-fold increase in expression and a p-value of less than 0.05 in perisynaptic Schwann cells versus both S100β-GFP+ cells and NG2-dsRed+ cells.
The inventors evaluated whether the S100β-GFP;NG2-dsRed mouse line is a reliable model to study perisynaptic Schwann cells and their functions at neuromuscular junctions. In healthy young adult muscle, the inventors observed the same number of perisynaptic Schwann cells at neuromuscular junctions in the extensor digitorum longus muscle of S100β-GFP and S100β-GFP;NG2-dsRed mice. See
The inventors next assessed whether S100β-GFP;NG2-dsRed mice can also be used to study perisynaptic Schwann cells at degenerating and regenerating neuromuscular junctions. The inventors first examined expression of NG2-dsRed and S100β-GFP after crushing the fibular nerve. See Dalkin et al. (2016). In this injury model, motor axons completely retract within one day and return to reinnervate vacated postsynaptic sites by seven days post-injury in young adult mice. Similar to healthy uninjured extensor digitorum longus muscles, NG2-dsRed and S100β-GFP coëxpressed exclusively in perisynaptic Schwann cells at 4-day and 7-day post-injury.
The inventors next crossed the SOD1G93A mouse line (see Gurney et al. (1994)), which is a model of ALS shown to exhibit significant degeneration of neuromuscular junctions (see Moloney et al. (2014)), with S100β-GFP;NG2-dsRed mice and examined the expression pattern of NG2-dsRed and S100β-GFP in the extensor digitorum longus during the symptomatic stage (P120). NG2-dsRed and S100β-GFP coëxpressed only in perisynaptic Schwann cells in the extensor digitorum longus of P120 SOD1G93A;S100β-GFP;NG2-dsRed mice.
Accordingly, this genetic labeling approach can confidently be used to study the synaptic glia of the neuromuscular junction in a manner previously not possible in healthy and stressed neuromuscular junctions.
The inventors analyzed NG2 expression in S100β-GFP+ Schwann cells during the course of neuromuscular junction development in the extensor digitorum longus muscle of S100β-GFP;NG2-dsRed mice. See
Perisynaptic Schwann cells might upregulate NG2 during development to restrict motor axon growth at the neuromuscular junction. See Filous et al. (2014). Induced NG2 expression during neuromuscular junction development along with the constant presence of S100β-GFP+ cells (S100β-GFP+ or S100β-GFP+;NG2-dsRed+) and absence of single labeled NG2-dsRed+ cells at neuromuscular junctions at every observed developmental time point strongly support previous studies indicating that perisynaptic Schwann cells originate from Schwann cells. See Lee et al. (2017).
To gain insights into the rules that govern the distribution of perisynaptic Schwann cells at neuromuscular junctions, the inventors compared perisynaptic Schwann cell density in the relationship between NG2 expression and perisynaptic Schwann cell differentiation, soleus, and diaphragm muscles to determine if perisynaptic Schwann cell density is similar across muscles with varying neuromuscular junction sizes, fiber types and functional demands. The inventors observed similar perisynaptic Schwann cell densities in each muscle type, suggesting that the number of perisynaptic Schwann cells directly correlates with the size of the neuromuscular junction and not the functional characteristics or fiber type composition of the muscles with which they are associated.
Immunostaining showed that NG2, which the inventors identified as a PSC-enriched gene by RNA-Seq, is concentrated at the neuromuscular junction. The inventors showed that NG2 is specifically expressed by S100β-GFP+ perisynaptic Schwann cells but not myelinating S100β-GFP+ Schwann cells. Thus, the combined expression of S100β and NG2 is a unique molecular marker of perisynaptic Schwann cells in skeletal muscle. Thus, NG2 is a marker of differentiated perisynaptic Schwann cells. The inventors showed that Schwann cells induce expression of NG2 shortly after the cells arrive at the neuromuscular junction during maturation of the synapse. However, the means by which the induced expression of NG2 is part of a program to establish or further specify perisynaptic Schwann cell identity in Schwann cells at the neuromuscular junction, through activation of the NG2 promoter, remains to be determined.
The inventors used FACS to isolate S100β-GFP+;NG2-dsRed+ perisynaptic Schwann cells from skeletal muscle to analyze perisynaptic Schwann cell transcriptome. This analysis reveals expression of several genes that were previously implicated in modulation of synaptic activity, synaptic pruning, and synaptic maintenance by perisynaptic Schwann cells. The inventors identified several genes that are highly expressed in perisynaptic Schwann cells but not Schwann cells or NG2+ cells. The inventors verified several of these with qPCR and immunohistochemistry. This analysis shows a unique gene expression signature that distinguishes perisynaptic Schwann cells from all other Schwann cells.
While the function of the majority of genes found enriched in perisynaptic Schwann cells at the neuromuscular synapse remains to be determined, many function in neuronal circuits in the central nervous system and in cell-cell communication. This is the case for NG2, which terminates axonal growth in glial scars in the spinal cord. See Filous et al. (2014). Therefore, NG2 can be used by perisynaptic Schwann cells to tile, and thus occupy unique territories, and prevent motor axons from developing sprouts that extend beyond the postsynaptic partner. The inventors found that the NG2 promoter is active in some perisynaptic Schwann cells at P0, a time when motor axon nerve endings at neuromuscular junctions undergo rapid morphological changes. See Sanes & Lichtman (1999); Sanes & Lichtman (2001). The progressive activation of the NG2 promoter in perisynaptic Schwann cells is complete by P9, which coincides with the elimination of extra numeral axons innervating the same postsynaptic site in mice. See Sanes & Lichtman (1999); Sanes & Lichtman (2001). Perisynaptic Schwann cells might use NG2 to promote the maturation of the presynaptic region and thus the neuromuscular junction. Perisynaptic Schwann cells might use NG2 to repel each other as they tile during development to occupy unique territories at the neuromuscular junction. See Brill et al. (2011).
The inventors next examined the spatial distribution of perisynaptic Schwann cells at the neuromuscular junction using the Nearest Neighbor (NN) analysis. This analysis measures the linear distance between neighboring cells to determine the regularity of spacing (see Wassle & Riemann (1978); Cook (1996)), quantified using the regularity index. Randomly distributed groups of cells yield a nearest neighbor regularity index (NNRI) of 1.91 while those with nonrandom, regularly ordered distributions yield higher NNRI values. See Reese & Keeley (2015).
The spacing of perisynaptic Schwann cells yielded high NNRI values and thus maintained ordered, non-random distributions at neuromuscular junctions in adult mouse extensor digitorum longus muscle. This ordered distribution was maintained regardless of the overall number of perisynaptic Schwann cells at a given neuromuscular junction. These observations are in accord with a published study indicating that perisynaptic Schwann cells occupy distinct territories at adult neuromuscular junctions. See Brill et al. (2011). Presynaptic, postsynaptic, or PSC-PSC mechanisms of communication can dictate the spatial distribution of perisynaptic Schwann cells.
The ability to distinguish perisynaptic Schwann cells from all other Schwann cells makes it possible to identify genes that are either preferentially-expressed or specifically-expressed in perisynaptic Schwann cells. The inventors used fluorescence-activated cell sorting (FACS) to separately isolate double labeled S100β-GFP+;NG2-dsRed+ perisynaptic Schwann cells, single-labeled S100β-GFP+ Schwann cells, and single-labeled NG2-dsRed+ cells (including α-SMA pericytes and Tuj1+ precursor cells (see Birbrair et al. (2013b)) from juvenile (P15-P22) S100β-GFP;NG2-dsRed transgenic mice. We then used RNA-Sequencing (RNA Seq) to compare the transcriptional profile of perisynaptic Schwann cells with the other two groups. See
Cross-referencing the transcriptomic data with a list of genes compiled from previously published studies showed enrichment or functions in perisynaptic Schwann cells. This analysis identified twenty-seven genes expressed in isolated S100β-GFP+;NG2-dsRed+ perisynaptic Schwann cells that were previously shown to be associated with perisynaptic Schwann cells. See TABLE 4. These included genes involved in detection and modulation of synaptic activity such as adenosine (Robitaille (1995)); Rochon et al. (2001)), P2Y (Robitaille (1995); Heredia et al. (2018); Darabid et al. (2018), acetylcholine (Robitaille et al. (1997); Petrov et al. (2014); Wright et al. (2009) and glutamate receptors (Pinard et al. (2003), Butyrylcholinesterase (BChE) (Petrov et al. (2014), and L-type calcium channels (Robitaille et al., 1996). Additionally, genes involved in neuromuscular junction development, synaptic pruning, and maintenance including agrin, 2′,3′-cyclic nucleotide 3′ phosphodiesterase (CNP) (Georgiou & Charlton (1999)), Erb-b2 receptor tyrosine kinase 2 (Erbb2) (Trachtenberg & Thompson (1996); Morris et al. (1999); Woldeyesus et al. (1999)), Erbb3 (Trachtenberg & Thompson (1996); Riethmacher et al. (1997)) GRB2-associated protein 1 (Gab1) (Park et al. (2017), myelin-associated glycoprotein (MAG) (Georgiou & Charlton (1999)), and myelin protein zero (Mpz) (Georgiou & Charlton (1999)) were detected in perisynaptic Schwann cells.
Quantitative PCR (qPCR) to validate preferential expression of select genes in perisynaptic Schwann cells. The inventors obtained RNA from S100β-GFP+;NG2-dsRed+ perisynaptic Schwann cells, single-labeled S100β-GFP+ Schwann cells, and single-labeled NG2-dsRed+ cells isolated using FACS from juvenile S100β-GFP;NG2-dsRed transgenic mice. The inventors examined eight genes identified by RNA seq as being highly enriched in perisynaptic Schwann cells. These genes included the identified Ajap1, Col20a1, FoxD3, Nrxn1, PDGFa, and Pdlim4 genes and other genes previously shown to be enriched in perisynaptic Schwann cells. See
Specific compositions and methods of combinatorial use of markers to isolate synaptic glia to generate synapses in a dish for high-throughput and high-content drug discovery and testing have been described. The detailed description in this specification is illustrative and not restrictive or exhaustive. The detailed description is not intended to limit the disclosure to the precise form disclosed. Other equivalents and modifications besides those already described are possible without departing from the inventive concepts described in this specification, as a person having ordinary skill in the biomedical art can recognize. When the specification or claims recite method steps or functions in order, alternative embodiments may perform the functions in a different order or substantially concurrently. The inventive subject matter, therefore, shall not be restricted except in the spirit of the disclosure.
When interpreting the disclosure, all terms shall be interpreted in the broadest possible manner consistent with the context. Unless otherwise defined, all technical and scientific terms used in this specification have the same meaning as commonly understood by a person having ordinary skill in the biomedical art. This invention is not limited to the particular methodology, protocols, reagents, and the like described in this specification and, as such, can vary in practice. The terminology used in this specification is not intended to limit the scope of the invention, which is defined solely by the claims.
All patents and publications cited throughout this specification are expressly incorporated by reference to disclose and describe the materials and methods that might be used with the technologies described in this specification. The publications discussed are provided solely for their disclosure before the filing date. They shall not be construed as an admission that the inventors may not antedate such disclosure under prior invention or for any other reason. If there is an apparent discrepancy between a previous patent or publication and the description provided in this specification, the present specification (including any definitions) and claims shall control. All statements as to the date or representation as to the contents of these documents are based on the information available to the applicants and constitute no admission as to the correctness of the dates or contents of these documents. The dates of publication provided in this specification may differ from the actual publication dates. If there is an apparent discrepancy between a publication date provided in this specification and the actual publication date supplied by the publisher, the actual publication date shall control.
When a range of values is provided, each intervening value, to the tenth of the unit of the lower limit, unless the context dictates otherwise, between the upper and lower limit of that range and any other stated or intervening value in that range of values.
A person having ordinary skill in the biomedical art can use these patents, patent applications, and scientific references as guidance to predictable results when making and using the invention:
This invention claims priority under 35 U.S.C. 119(e) to the provisional patent application U.S. Ser. No. 63/013,344, titled “Combinatorial use of markers to isolate synaptic glia to generate synapses in a dish for high-throughput and high-content drug discovery and testing” and filed on Apr. 21, 2020, the entire contents of which are hereby incorporated herein by reference.
This invention was made with government support under Grant Numbers R01 AG055545 and R21 NS106313 awarded by the National Institutes of Health. The government has certain rights in the invention.
| Number | Date | Country | |
|---|---|---|---|
| 63013344 | Apr 2020 | US |
