Patent Application
20230181747
A sequence listing containing SEQ ID NOs: 1-5, created Apr. 27, 2021, 2 kB, is provided herewith in a computer-readable nucleotide/amino acid .txt file and is specifically incorporated by reference.
Small molecule therapeutics commonly used in the treatment of human diseases, such as cancer, often suffer from poor solubility and stability in aqueous solutions or blood.
Systems for improving drug delivery often rely on covalent-conjugation to carrier species or encapsulation by carrier species. Covalent conjugation generally involves attaching drugs via chemical bonds, such as esters and disulfides, that facilitate release. Covalent conjugation has received increasing interest because it confers the drug delivery system with enhanced stability during blood circulation. This approach not only precludes premature release of therapeutics, but also allows for specific stimuli-triggered drug release in diseased tissues. In the case of polymeric carriers, drugs are typically tethered as side chains via direct polymerization of drug-modified monomers or via post-polymerization modifications. In each case, a statistical average of drugs is incorporated per polymer chain because of the dispersity of the polymer, which limits controllability of therapeutic dosage.
Other issues with polymeric therapeutics include hydrophobicity, poor resistance to proteolysis, poor cellular uptake, or inconsistent or incomplete therapeutic attachment, thereby requiring extra purification steps and/or limiting controllability of drug dosage.
To overcome these issues and to prepare polymer-based drug delivery systems in a more precise and well-defined fashion, new approaches are needed. These issues, and others, are addressed by the polymers, and associated methods, disclosed herein, which include one or more therapeutic moieties.
Included herein are polymers that comprise one or more non-peptide therapeutic moieties, such as small molecule therapeutics. In certain embodiments, the polymers contain one non-peptide therapeutic moiety per polymer, optionally at the chain end of the polymer, providing for precise and accurate control of drug delivery and dosing. In certain embodiments, the polymers comprise peptide-containing side chains which increases cellular uptake. In certain embodiments, the polymers are positively charged, which further facilitates cellular uptake. In certain embodiments, the polymers are water soluble. A tunable range of compositions of these polymers are disclosed, including tunable compositions and distribution of the peptide moieties, the therapeutic moieties, and the charge, which in turn provides for tunability of characteristics such as cellular uptake, potency, cytotoxicity, and water-solubility. Also disclosed herein are methods for synthesizing these polymers and methods for treating patients using these polymers, or aqueous solutions comprising these polymers. In certain embodiments, the polymers are formed by ring-opening metathesis polymerization. In certain embodiments, the polymers and synthesis steps are free of drug-containing substituted or unsubstituted norbornene or norbornene derivative monomers, including but not limited to norbornenyl monomers. Applications of the polymers and methods disclosed herein include small molecule therapeutic delivery systems. For example, in embodiments, a peptide-containing polymer provided herein is a carrier for a non-peptide therapeutic (e.g., small molecule drug), whereby the peptide-containing polymer as a carrier provides for, facilitates, or improves (compared to providing said non-peptide therapeutic without the polymer as a carrier): stability of the non-peptide therapeutic in biological fluids and biological systems, cellular uptake of the non-peptide therapeutic, and accurate and reproducible dosing of the therapeutic. Advantages of the polymers and methods disclosed herein include: ability to incorporate a single drug moiety onto the end of a ROMP polymer; tunability of charge of the polymer for tunable cellular uptake; end-labelled and non-labelled polymers can be separated; drug-end-labelled polymers are can be dispersed as single chains in aqueous environments; the polymers show resistance to proteolysis; and the polymers show enhanced cellular internalization.
Aspects of the invention include a polymer comprising: a plurality of repeating units, each repeating unit comprising a polymer backbone group directly or indirectly covalently linked to one or two side chain moieties, the polymer being characterized by formula FX1: Q1-[M(Z)u]n-Q2 (FX1); wherein: n is an integer selected from the range of 2 to 1000; u is 1 or 2; each M is independently the polymer backbone group of one of the repeating units and each M is independently a ROMP-polymerized monomer; each Z is independently one of the one or two side chain moieties of a repeating unit and each Z independently comprises a peptide moiety or a non-peptide therapeutic moiety; wherein the polymer comprises a plurality of peptide moieties; each Z is independently directly or indirectly covalently attached to an M; each M is covalently attached to at least one other M and 100% of the ROMP-polymerized monomers are each individually attached to the one or two side chain moieties of the respective repeating unit; Q1 is a first polymer-terminating group; Q2 is a second polymer-terminating group; and at least one Z of the polymer comprises a non-peptide therapeutic moiety, Q1 comprises a non-peptide therapeutic moiety, and/or Q2 comprises a non-peptide therapeutic moiety. Aspects of the invention include a polymer comprising: a plurality of repeating units, each repeating unit comprising a polymer backbone group directly or indirectly covalently linked to one or two side chain moieties, the polymer being characterized by formula FX1: Q1-[M(Z)u]n-Q2 (FX1); wherein: n is an integer selected from the range of 2 to 1000; u is 1 or 2; each M is independently the polymer backbone group of one of the repeating units and each M is independently a ROMP-polymerized monomer; each Z is independently one of the one or two side chain moieties of a repeating unit and each Z independently comprises a peptide moiety or a non-peptide therapeutic moiety; wherein the polymer comprises a plurality of peptide moieties; each Z is independently directly or indirectly covalently attached to an M; each M is covalently attached to at least one other M and each M is independently directly or indirectly covalently attached to one or two of Z, such that 100% of the ROMP-polymerized monomers are each individually attached to one or two side chain moieties; Q1 is a first polymer-terminating group; Q2 is a second polymer-terminating group; and at least one Z of the polymer comprises a non-peptide therapeutic moiety, Q1 comprises a non-peptide therapeutic moiety, and/or Q2 comprises a non-peptide therapeutic moiety. Optionally in any of the polymers, methods, and liquid compositions disclosed herein, n and a fraction (“P”) of all side chain moieties in the polymer that are side chain moieties comprising a peptide moiety are selected to provide for cellular uptake. Optionally, cellular uptake refers to cellular uptake of or penetration of a biological by at least a portion of the polymer, the majority of the polymer, or the entirety of the polymer. Cellular uptake can be measured or quantified, such as via absorbance or fluorescence signal unique to a portion of the polymer (such as the drug) using different cellular assays, UV-Vis absorption spectroscopy, fluorescence spectroscopy, radio labeling, mass-spectroscopy, and/or inductively coupled plasma mass spectrometry. Preferably, in any of the polymers and methods disclosed herein, Q1 comprises a non-peptide therapeutic moiety and/or Q2 comprises a non-peptide therapeutic moiety. Optionally in any of the polymers, methods, and liquid compositions disclosed herein, Q1 comprises a non-peptide therapeutic moiety. Optionally in any of the polymers, methods, and liquid compositions disclosed herein, Q2 comprises a non-peptide therapeutic moiety. Optionally in any of the polymers, methods, and liquid compositions disclosed herein, only one of Q1 and Q2 comprises a non-peptide therapeutic moiety. Preferably, for some applications, in Preferably, for some applications, in any of the polymers, methods, and liquid compositions disclosed herein, each Z is independently a side chain moiety not comprising a non-peptide therapeutic moiety such that the polymer does not comprise a non-peptide therapeutic moiety between Q1 and Q2; and wherein Q1 and/or Q2 comprises a non-peptide therapeutic moiety. For example, optionally for some applications, a non-peptide therapeutic moiety is only at one or both of the polymer-terminating groups of the polymer. Preferably, for some applications, in any of the polymers, methods, and liquid compositions disclosed herein, only one of Q1 and Q2 comprises a therapeutic moiety and the polymer does not comprise a therapeutic moiety between Q1 and Q2 (such that the polymer comprises only one non-peptide therapeutic moiety). Optionally in any of the polymers, methods, and liquid compositions disclosed herein, each non-peptide therapeutic moiety is identical to each other non-peptide therapeutic moiety. Optionally in any of the polymers, methods, and liquid compositions disclosed herein, each Z is independently a side chain moiety comprising a peptide moiety. Optionally in any of the polymers, methods, and liquid compositions disclosed herein, each Z independently comprises a peptide moiety, a non-peptide therapeutic moiety, or a dye moiety. For clarity, each -[M(Z)u]— of a polymer characterized by formula FX1 independently corresponds to a repeating unit of the polymer.
Optionally in any of the polymers, methods, and liquid compositions disclosed herein, each peptide moiety of the polymer is identical to each other peptide moiety of the polymer. Optionally in any of the polymers, methods, and liquid compositions disclosed herein, the peptide comprises at least two peptide moieties; wherein the at least two peptide moieties include at least two unique peptide moieties. For example, optionally for some application, the polymer comprises at least two different peptide moieties or sequences. Optionally in any of the polymers, methods, and liquid compositions disclosed herein, the peptide comprises at least three peptide moieties; wherein the at least three peptide moieties include at least three unique peptide moieties. Optionally in any of the polymers, methods, and liquid compositions disclosed herein, at least one of the plurality of peptide moieties is a therapeutic peptide moiety. Optionally in any of the polymers, methods, and liquid compositions disclosed herein, the polymer comprises one, two, or more than two different therapeutic peptide moieties. Optionally in any of the polymers, methods, and liquid compositions disclosed herein, the polymer comprises one, two, or more than two different non-peptide therapeutic moieties. Optionally in any of the polymers, methods, and liquid compositions disclosed herein, at least one of the plurality of peptide moieties is a non-cell-penetrating peptide. Optionally in any of the polymers, methods, and liquid compositions disclosed herein, each peptide moiety of at least a majority of the plurality of peptide moieties is a non-cell-penetrating peptide. Optionally in any of the polymers, methods, and liquid compositions disclosed herein, cellular uptake of the polymer is provided by a combination of parameters n, P, and peptide moiety charge. Optionally in any of the polymers, methods, and liquid compositions disclosed herein, cellular uptake of the polymer is not (or, not necessarily) provided by a sequence of each individual peptide moiety. Optionally in any of the polymers, methods, and liquid compositions disclosed herein, at least one of the plurality of peptide moieties comprises a sequence having 80% or greater sequence homology of GGSGSGS (SEQ ID NO:1), GGSGSGE (SEQ ID NO:2), GGSGSGK (SEQ ID NO:3), GGSGSGR (SEQ ID NO:4), GGSGSGRR (SEQ ID NO:5), or a combination of these. Optionally in any of the polymers, methods, and liquid compositions disclosed herein, the polymer has a net positive charge. The presence of a positive charge can increase or otherwise enhance the therapeutic activity or function of the polymer, or portions thereof such as of the non-peptide therapeutic(s) and any therapeutic peptides, if present. The presence of a positive charge on the polymer can increase or otherwise enhance the therapeutic activity or function of the polymer, or portions thereof at least because of the enhanced or improved cellular uptake efficiency of the polymer due to the presence of the positive charge. Preferably, the net positive charge of the polymer is present at least when the polymer is exposed to physiological conditions, including normal physiological conditions. Preferably, any positive charge of the polymer is present at least when the polymer is exposed to physiological conditions, including normal physiological conditions. Optionally in any of the polymers, methods, and liquid compositions disclosed herein, at least one of the plurality of peptide moieties has a positive charge. Optionally in any of the polymers, methods, and liquid compositions disclosed herein, at least one side chain moiety Z comprises a positive charge. A positive charge of a peptide moiety can be present at any portion of the sequence of the peptide having the positive charge. A polymer including a positive charge can include cations that are not pH dependent. Optionally in any of the polymers, methods, and liquid compositions disclosed herein, each of a number of peptide moieties corresponding to at least 5% of the plurality of peptide moieties comprises a positive charge. Optionally in any of the polymers, methods, and liquid compositions disclosed herein, each peptide moiety of at least 5% of the plurality of peptide moieties comprises a positive charge. Optionally in any of the polymers, methods, and liquid compositions disclosed herein, each of a number of peptide moieties corresponding to at least 1%, at least 5%, at least 10%, optionally at least 20%, of the plurality of peptide moieties comprises a positive charge. Optionally in any of the polymers, methods, and liquid compositions disclosed herein, each peptide moiety having a positive charge has a sequence comprising at least one arginine (R) group and/or at least one lysine (K) group. Optionally in any of the polymers, methods, and liquid compositions disclosed herein, a cell uptake efficiency of the polymer is higher due to the presence of at least one positively charged peptide moiety, compared to a cell uptake efficiency of an equivalent polymer free of a positively charged group. Optionally in any of the polymers, methods, and liquid compositions disclosed herein, each of a number of peptide moieties corresponding to at least a fraction of the plurality of peptide moieties is a hydrophilic peptide such that the polymer is hydrophilic. Optionally in any of the polymers, methods, and liquid compositions disclosed herein, each of a number of peptide moieties corresponding to at least 30%, at least 50%, at least 75%, optionally at least 90%, of the plurality of peptide moieties is a hydrophilic peptide such that the polymer is hydrophilic. Optionally in any of the polymers, methods, and liquid compositions disclosed herein, each peptide moiety of the polymer is a hydrophilic peptide. Optionally in any of the polymers, methods, and liquid compositions disclosed herein, each peptide moiety comprises at least 2 amino acids. Optionally in any of the polymers, methods, and liquid compositions disclosed herein, each peptide moiety comprises at least 2 and less than or equal to 50 amino acids. Optionally in any of the polymers, methods, and liquid compositions disclosed herein, each peptide moiety is a branched polypeptide, a linear polypeptide or a cross-linked polypeptide. Optionally in any of the polymers, methods, and liquid compositions disclosed herein, the polymer is a brush polymer.
Preferably, for some applications, in any of the polymers, methods, and liquid compositions disclosed herein, each M is independently a ROMP-polymerized substituted or unsubstituted norbornene or a ROMP-polymerized substituted or unsubstituted oxanorbornene monomer. Preferably, for some applications, in any of the polymers, methods, and liquid compositions disclosed herein, each M is independently a ROMP-polymerized substituted or unsubstituted norbornene dicarboximide monomer. Preferably, for some applications, in any of the polymers, methods, and liquid compositions disclosed herein, the polymer is characterized by formula FX2a or FX2b:
wherein: each of L1 and L2 is independently a covalent linking group; each of Z, Z1, and Z2 is independently the side chain moiety; and w is 1 or 0. Preferably, for some applications, in any of the polymers, methods, and liquid compositions disclosed herein, each M covalently attached to one or two side chain moieties through a covalent linking group is characterized by formula FX3a, FX3b, FX3c, FX3d, FX3e, FX3f, FX3g, or FX3h:
wherein each of L3 and L4 is independently the covalent linking group; and wherein each of Z1 and Z2 is independently the side chain moiety. Preferably, for some applications, in any of the polymers, methods, and liquid compositions disclosed herein, each M covalently attached to one or two side chain moieties is characterized by formula FX3i, FX3j, FX3k, FX3l, FX3m, FX3n, FX3o, or FX3p:
wherein each of Z1 and Z2 is independently the side chain moiety. Optionally in any of the polymers, methods, and liquid compositions disclosed herein, each of L1, L2, L3, and L4 is independently selected from a single bond, an oxygen, and one or more substituted or substituted groups having an alkyl group, an alkenylene group, an arylene group, an alkoxy group, an acyl group, a carboxyl group, an aliphatic group, an amide group, an aryl group, an amine group, an ether group, a ketone group, an ester group, a triazole group, a diazole group, a pyrazole group, or combinations thereof. Optionally in any of the polymers, methods, and liquid compositions disclosed herein, each of L1, L2, L3, and L4 is independently selected from a single bond, —O—, C1-C10 alkyl, C2-C10 alkenylene, C3-C10 arylene, C1-C10 alkoxy, C1-C10 acyl and combinations thereof.
Optionally in any of the polymers, methods, and liquid compositions disclosed herein, Q1 and/or Q2 is characterized by the formula FX4a or FX4b:
wherein: T is a non-peptide therapeutic moiety; and L6 is a covalent linking group selected from a single bond, an oxygen, and one or more substituted or substituted groups having an alkyl group, an alkenylene group, an arylene group, an alkoxy group, an acyl group, a carboxyl group, an aliphatic group, an amide group, an aryl group, an amine group, an ether group, a ketone group, an ester group, a triazole group, a diazole group, a pyrazole group, or combinations thereof. Optionally in any of the polymers, methods, and liquid compositions disclosed herein, L1 is characterized by the formula FX5a, FX5b, FX5c, FX5d, FX5e, FX5f, FX5g, or any combination thereof:
wherein: q is an integer selected from the range of 1 to 10; and L5 is a covalent linking group. The polymer of any one of claims 30-31, wherein Q1 and/or Q2 is characterized by the formula FX6a, FX6b, FX6c, or FX6d:
Optionally in any of the polymers, methods, and liquid compositions disclosed herein, each non-peptide therapeutic moiety of the polymer is identical to each other non-peptide therapeutic moiety of the polymer. Optionally in any of the polymers, methods, and liquid compositions disclosed herein, the polymer comprises at least two non-peptide therapeutic moieties; wherein the at least two non-peptide therapeutic moieties include at least two unique non-peptide therapeutic moieties. Optionally in any of the polymers, methods, and liquid compositions disclosed herein, the non-peptide therapeutic moiety is a therapeutic agent and is not a diagnostic agent. Optionally in any of the polymers, methods, and liquid compositions disclosed herein, the therapeutic moiety has a molecular weight selected from the range of 100 to 4500 Da. Optionally in any of the polymers, methods, and liquid compositions disclosed herein, the therapeutic moiety has a molecular weight selected from the range of 100 to 2000 Da, optionally less than 1000 Da, optionally less than 650 Da, optionally less than 500 Da, optionally selected from the range of 100 to 1000 Da. Preferably, but not necessarily, the non-peptide therapeutic is characterized (in the art) as a small molecule drug. Optionally in any of the polymers, methods, and liquid compositions disclosed herein, the non-peptide therapeutic moiety is a cell growth or proliferation inhibitory agent, an anti-inflammatory agent, an anti-tumor or anti-cancer agent, an anti-apoptotic agent, anti-diabetic agent, anti-obesity agent, anti-infective agent, anti-bacterial agent, anti-viral agent, an agent for promoting cell growth and differentiation, an agent for preventing pain, an agent for preventing or treating neural degeneration, an agent for promoting neurogenesis; an immunosuppressant agent, an immunostimulant agent, an MMP-inhibitor agent, a corticosteroid, an anti-angiogenic agent, a pro-angiogenic agent, an NSAID, paclitaxel, or any combination of these. Optionally in any of the polymers, methods, and liquid compositions disclosed herein, each non-peptide therapeutic moiety is therapeutically active when attached to the polymer and/or when released from the polymer. Optionally in any of the polymers, methods, and liquid compositions disclosed herein, each non-peptide therapeutic moiety is released from the polymer when the polymer is exposed to an acidic solution.
Optionally in any of the polymers, methods, and liquid compositions disclosed herein, the polymer is characterized by a polydispersity index less than 1.5. Optionally in any of the polymers, methods, and liquid compositions disclosed herein, the polymer exhibits no peptide cleavage after at least 3 hours of exposure to pronase. Optionally in any of the polymers, methods, and liquid compositions disclosed herein, the peptides on the polymer exhibit less than 25% of the proteolytic cleavage after at least 3 hours of exposure to normally proteolytic enzymes compared to the degradation observed for a linear peptide alone.
Aspects of the invention include a liquid composition comprising an aqueous plurality of polymers, each polymer being according to any one or any combination of the embodiments disclosed herein, wherein the therapeutic formulation is free of polymers that do not include the non-peptide therapeutic moiety. Optionally, each polymer of the aqueous plurality of polymers is individually solvated by water.
Optionally, the liquid composition being free of aggregates or particles having a plurality of polymers. Optionally, the liquid composition is a therapeutic formulation having a therapeutically effective concentration of the aqueous polymers.
Aspects of the invention include a liquid composition comprising: water; and a plurality of aqueous polymers, wherein aqueous polymer is independently solvated by water and each aqueous polymer independently comprises: a plurality of repeating units, each repeating unit comprising a polymer backbone group directly or indirectly covalently linked to one or two side chain moieties, the polymer being characterized by formula FX1: Q1-[M(Z)u]n-Q2 (FX1); wherein: n is an integer selected from the range of 2 to 1000; u is 1 or 2; each M is independently the polymer backbone group of one of the repeating units and each M is independently a ROMP-polymerized monomer; each Z is independently one of the one or two side chain moieties and each Z independently comprises a peptide moiety or a non-peptide therapeutic moiety; wherein the polymer comprises a plurality of peptide moieties; each Z is independently directly or indirectly covalently attached to an M; each M is covalently attached to at least one other M and each M is independently directly or indirectly covalently attached to one or two of Z, such that 100% of the ROMP-polymerized monomers are each individually attached to the respective one or two side chain moieties; Q1 is a first polymer-terminating group; Q2 is a second polymer-terminating group; and at least one Z comprises of the polymer a non-peptide therapeutic moiety, Q1 comprises a non-peptide therapeutic moiety, and/or Q2 comprises a non-peptide therapeutic moiety. Optionally, the concentration of the plurality of aqueous polymers is selected from the range of 1 pM to 1 M. Optionally, the liquid composition is a therapeutic formulation having a therapeutically effective concentration of the aqueous polymers. Preferably, the liquid composition is free of aggregates or particles having a plurality of polymers.
Aspects of the invention include a method of treating or managing a condition in a subject comprising: administering to a subject an effective amount of a polymer comprising: a plurality of repeating units, each repeating unit comprising a polymer backbone group directly or indirectly covalently linked to one or two side chain moieties, the polymer being characterized by formula FX1: Q1-[M(Z)u]n-Q2 (FX1); wherein: n is an integer selected from the range of 2 to 1000; u is 1 or 2; each M is independently the polymer backbone group of one of the repeating units and each M is independently a ROMP-polymerized monomer; each Z is independently one of the one or two side chain moieties and each Z independently comprises a peptide moiety or a non-peptide therapeutic moiety; wherein the polymer comprises a plurality of peptide moieties; each Z is independently directly or indirectly covalently attached to an M; each M is covalently attached to at least one other M and each M is independently directly or indirectly covalently attached to one or two of Z, such that 100% of the ROMP-polymerized monomers are each individually attached to the one or two side chain moieties of the respective repeating unit; Q1 is a first polymer-terminating group; Q2 is a second polymer-terminating group; and at least one Z comprises of the polymer a non-peptide therapeutic moiety, Q1 comprises a non-peptide therapeutic moiety, and/or Q2 comprises a non-peptide therapeutic moiety.
Aspects of the invention include a method of treating or managing a condition in a subject comprising: administering to the subject an effective amount of a liquid composition having water and a plurality of aqueous polymers; wherein each of the aqueous polymers independently comprises: a plurality of repeating units, each repeating unit comprising a polymer backbone group directly or indirectly covalently linked to one or two side chain moieties, the polymer being characterized by formula FX1: Q1-[M(Z)u]n-Q2 (FX1); wherein: n is an integer selected from the range of 2 to 1000; u is 1 or 2; each M is independently the polymer backbone group of one of the repeating unit and each M is independently a ROMP-polymerized monomer; each Z is independently one of the one or two side chain moieties and each Z independently comprises a peptide moiety or a non-peptide therapeutic moiety; wherein the polymer comprises a plurality of peptide moieties; each Z is independently directly or indirectly covalently attached to an M; each M is covalently attached to at least one other M and each M is independently directly or indirectly covalently attached to one or two of Z, such that 100% of the ROMP-polymerized monomers are each individually attached to the one or two side chain moieties of the respective repeating unit; Q1 is a first polymer-terminating group; Q2 is a second polymer-terminating group; and at least one Z comprises of the polymer a non-peptide therapeutic moiety, Q1 comprises a non-peptide therapeutic moiety, and/or Q2 comprises a non-peptide therapeutic moiety.
Optionally in any of the methods and liquid compositions disclosed herein, each aqueous polymer is independently solvated by water. Optionally in any of the methods and liquid compositions disclosed herein, the condition is myocardial ischemia, acute myocardial infarction, heart failure, rheumatoid arthritis, articular cartilage damage, acute and/or chronic epidermal wound, liver failure, nerve damage, acute brain injury, spinal disk injury, or any combination of these.
Aspects of the invention include a method for synthesizing a polymer, the method comprising steps of: ROMP-polymerizing of a plurality of monomers, each monomer being directly or indirectly covalently attached to at least one side chain moiety; terminating ROMP-polymerization using a chain termination agent, wherein the chain termination agent comprises a non-peptide therapeutic moiety; wherein the polymer comprises: a plurality of repeating units, each repeating unit comprising a polymer backbone group directly or indirectly covalently linked to one or two side chain moieties, the polymer being characterized by formula FX1: Q1-[M(Z)u]n-Q2 (FX1); wherein: n is an integer selected from the range of 2 to 1000; u is 1 or 2; each M is independently the polymer backbone group of one of the repeating units and each M is independently a ROMP-polymerized monomer; each Z is independently one of the one or two side chain moieties and each Z independently comprises a peptide moiety or a non-peptide therapeutic moiety; wherein the polymer comprises a plurality of peptide moieties; each Z is independently directly or indirectly covalently attached to an M; each M is covalently attached to at least one other M and each M is independently directly or indirectly covalently attached to one or two of Z, such that 100% of the ROMP-polymerized monomers are each individually attached to the one or two side chain moieties of the respective repeating unit; Q1 is a first polymer-terminating group; Q2 is a second polymer-terminating group; and Q1 comprises a non-peptide therapeutic moiety and/or Q2 comprises a non-peptide therapeutic moiety. Optionally, the chain termination agent is characterized by formula FX7a or FX7b:
wherein: r is 0 or 1; each of L1 and L2 is independent a covalent linker group selected from a single bond,
—O—, oxygen, C1-C10 alkyl, C2-C10 alkenylene, C3-C10 arylene, C1-C10 alkoxy, C1-C10 acyl, and one or more substituted or substituted groups having an alkyl group, an alkenylene group, an arylene group, an alkoxy group, an acyl group, a carboxyl group, an aliphatic group, an amide group, an aryl group, an amine group, an ether group, a ketone group, an ester group, a triazole group, a diazole group, a pyrazole group, or combinations thereof; and each of T1 and T2 is independently a non-peptide therapeutic moiety. Optionally, the chain termination agent is characterized by formula FX7c, FX7d, FX7e, FX7f, FX7g, FX7h, FX7i, or FX7j:
Optionally a method of synthesizing includes a step of making the chain termination agent. Optionally a method of synthesizing includes synthesizing a plurality of polymers and a step of purifying to remove at least a fraction of polymers not having the non-peptide therapeutic moiety, such that each of the plurality of polymers is independently the polymer. Optionally, the plurality of polymers are free of polymers not comprising the non-peptide therapeutic moiety.
Also include herein are polymers, liquid compositions, and methods according to any one of any combination of embodiments of polymers, liquid compositions, and methods disclosed herein.
Variants of the following peptide monomers are disclosed throughout the figures and description of the figures: GGSGSGS (SEQ ID NO:1), GGSGSGE (SEQ ID NO:2), GGSGSGK (SEQ ID NO:3), GGSGSGR (SEQ ID NO:4), GGSGSGRR (SEQ ID NO:5).
In general, the terms and phrases used herein have their art-recognized meaning, which can be found by reference to standard texts, journal references and contexts known to those skilled in the art. The following definitions are provided to clarify their specific use in the context of the invention.
The following abbreviations are used herein: MBHA refers to 4-methylbenzylhydrylamine; DMF refers to dimethylformaide; Acm refers to acetamidomethyl; TFA refers to trifluoroacetic acid; TIPS refers to triisopropyl silyl; RP-HPLC refers to reverse-phase high performance liquid chromatography; ESI-MS refers to electrospray ionization mass spectrometry; SEC-MALS refers to size-exclusion chromatography coupled with multiangle light scattering; and DP refers to degree of polymerization.
In an embodiment, a composition or compound of the invention is isolated or purified. In an embodiment, an isolated or purified compound is at least partially isolated or purified as would be understood in the art. In an embodiment, the composition or compound of the invention has a chemical purity of at least 95%, optionally for some applications at least 99%, optionally for some applications at least 99.9%, optionally for some applications at least 99.99%, and optionally for some applications at least 99.999% pure. The invention includes isolated and purified compositions of any of the polymers described herein.
As used herein, the term “polymer” refers to a molecule composed of repeating structural units connected by covalent chemical bonds often characterized by a number of repeating units, also referred to as base units (e.g., greater than or equal to 2 base units). As used herein, a term “polymer” is inclusive of an “oligomer” (i.e., an oligomer is a polymer; i.e., a polymer is optionally an oligomer). An “oligomer” refers to a molecule composed of repeating structural units, also referred to as base units, connected by covalent chemical bonds often characterized by a number of repeating units less such that the oligomer is a low molecular weight polymer. Preferably, but not necessarily, for example, an oligomer has equal to or less than 100 repeating units. Preferably, but not necessarily, for example, an oligomer has a lower molecular weight less than or equal to 10,000 Da. Oligomers may be the polymerization product of one or more monomer precursors. Polymerization of one or more monomers, or monomer precursors, resulting in formation of an oligomer may be referred to as oligomerization. An oligomer optionally includes 100 or less, 50 or less, 15 or less, 12 or less, 10 or less, or 5 or less repeating units (or, “base units”). An oligomer may be characterized has having a molecular weight of 10,000 Da or less, 5,000 Da or less, 1,000 Da or less, 500 Da or less, or 200 Da or less. A dimer, a trimer, a tetramer, or a pentamer is an oligomer having two, three, four, or five, respectively, repeating units, or base units. Polymers can have, for example, greater than 100 repeating units. Polymers can have, for example, a high molecular weight, such as greater than 10,000 Da, in some embodiments greater than or equal to 50,000 Da or greater than or equal to 100,000 Da. The term polymer includes homopolymers, or polymers consisting essentially of a single repeating monomer subunit. The term polymer also includes copolymers which are formed when two or more different types of monomers are linked in the same polymer. Copolymers may comprise two or more monomer subunits, and include random, block, brush, brush block, alternating, segmented, grafted, tapered and other architectures. Useful polymers include organic polymers or inorganic polymers that may be in amorphous, semi-amorphous, crystalline or semi-crystalline states. Polymer side chains capable of cross linking polymers (e.g., physical cross linking) may be useful for some applications. The invention provides polymers comprising therapeutic agents, such as brush polymers having at least a portion of the repeating units comprising side chains having therapeutic peptides and/or non-peptide therapeutic moieties. The polymers disclosed herein include one or more non-peptide therapeutic moieties.
Except where otherwise specified, the term “molecular weight” refers to an average molecular weight. Except where otherwise specified, the term “average molecular weight,” refers to number-average molecular weight. Number average molecular weight is defined as the total weight of a sample volume divided by the number of molecules within the sample. As is customary and well known in the art, peak average molecular weight and weight average molecular weight may also be used to characterize the molecular weight of the distribution of polymers within a sample.
The term “weight-average molecular weight” (Mw) refers to the average molecular weight defined as the sum of the products of the molecular weight of each polymer molecule (Mi) multiplied by its weight fraction (wi): Mw=ΣwiMi. As is customary and well known in the art, peak average molecular weight and number average molecular weight may also be used to characterize the molecular weight of the distribution of polymers within a sample.
A “polypeptide” or “oligopeptide” herein are used interchangeably and refer to a polymer of repeating structural units connected by a peptide bond. Typically, the repeating structural units of the polypeptide are amino acids including naturally occurring amino acids, non-naturally occurring amino acids, analogues of amino acids or any combination of these. The number of repeating structural units of a polypeptide, as understood in the art, are typically less than a “protein”, and thus the polypeptide often has a lower molecular weight than a protein. Peptides and peptide moieties, as used and described herein, comprise two or more amino acid groups connected via peptide bonds.
Amino acids and amino acid groups refer to naturally-occurring amino acids, unnatural (non-naturally occurring) amino acids, and/or combinations of these. Naturally-occurring amino acids are those encoded by the genetic code, as well as those amino acids that are later modified, e.g., hydroxyproline, γ-carboxyglutamate, and O-phosphoserine. Naturally-occurring α-amino acids include, without limitation, alanine (Ala), cysteine (Cys), aspartic acid (Asp), glutamic acid (Glu), phenylalanine (Phe), glycine (Gly), histidine (His), isoleucine (Ile), arginine (Arg), lysine (Lys), leucine (Leu), methionine (Met), asparagine (Asn), proline (Pro), glutamine (Gin), serine (Ser), threonine (Thr), valine (Val), tryptophan (Trp), tyrosine (Tyr), and combinations thereof. Stereoisomers of a naturally-occurring α-amino acids include, without limitation, D-alanine (D-Ala), D-cysteine (D-Cys), D-aspartic acid (D-Asp), D-glutamic acid (D-Glu), D-phenylalanine (D-Phe), D-histidine (D-His), D-isoleucine (D-Ile), D-arginine (D-Arg), D-lysine (D-Lys), D-leucine (D-Leu), D-methionine (D-Met), D-asparagine (D-Asn), D-proline (D-Pro), D-glutamine (D-Gln), D-serine (D-Ser), D-threonine (D-Thr), D-valine (D-Val), D-tryptophan (D-Trp), D-tyrosine (D-Tyr), and combinations thereof.
Unnatural (non-naturally occurring) amino acids include, without limitation, amino acid analogs, amino acid mimetics, synthetic amino acids, N-substituted glycines, and N-methyl amino acids in either the L- or D-configuration that function in a manner similar to the naturally-occurring amino acids. For example, “amino acid analogs” can be unnatural amino acids that have the same basic chemical structure as naturally-occurring amino acids (i.e., a carbon that is bonded to a hydrogen, a carboxyl group, an amino group) but have modified side-chain groups or modified peptide backbones, e.g., homoserine, norleucine, methionine sulfoxide, methionine methyl sulfonium. “Amino acid mimetics” refer to chemical compounds that have a structure that is different from the general chemical structure of an amino acid, but that functions in a manner similar to a naturally-occurring amino acid. Amino acids may be referred to herein by either the commonly known three letter symbols or by the one-letter symbols recommended by the IUPAC-IUB Biochemical Nomenclature Commission.
“Block copolymers” are a type of copolymer comprising blocks or spatially segregated domains, wherein different domains comprise different polymerized monomers, for example, including at least two chemically distinguishable blocks. Block copolymers may further comprise one or more other structural domains, such as hydrophobic groups, hydrophilic groups, etc. In a block copolymer, adjacent blocks are constitutionally different, i.e. adjacent blocks comprise constitutional units derived from different species of monomer or from the same species of monomer but with a different composition or sequence distribution of constitutional units. Different blocks (or domains) of a block copolymer may reside on different ends or the interior of a polymer (e.g. [A][B]), or may be provided in a selected sequence ([A][B][A][B]). “Diblock copolymer” refers to block copolymer having two different polymer blocks. “Triblock copolymer” refers to a block copolymer having three different polymer blocks, including compositions in which two non-adjacent blocks are the same or similar. “Pentablock” copolymer refers to a copolymer having five different polymer including compositions in which two or more non-adjacent blocks are the same or similar.
“Polymer backbone group” refers to groups that are covalently linked to make up a backbone of a polymer, such as a block copolymer. Polymer backbone groups may be linked to side chain groups, such as polymer side chain groups. Some polymer backbone groups useful in the present compositions are derived from polymerization of a monomer selected from the group consisting of a substituted or unsubstituted, olefin, vinyl, acrylate, acrylamide, cyclic olefin, norbornene, norbornene anhydride, cyclooctene, cyclopentadiene, styrene and acrylate. Some polymer backbone groups useful in the present compositions are obtained from metal-free photoinduced reversible-deactivation radical polymerization (photo-RDRP), photo-electron transfer reversible addition-fragmentation transfer polymerization (PET-RAFT), and/or photoinitiated polymerization-induced self-assembly (photo-PISA). Polymer backbones may terminate (e.g., by coupling, disproportionation, or chain transfer) in a range of backbone terminating groups including, but not limited to, hydrogen, C1-C10 alkyl, C3-C10 cycloalkyl, C5-C10 aryl, C5-C10 heteroaryl, C1-C10 acyl, C1-C10 hydroxyl, C1-C10 alkoxy, C2-C10 alkenyl, C2-C10 alkynyl, C5-C10 alkylaryl, —CO2R30, —CONR31R32, —COR33, —SOR34, —OSR35, —SO2R36, —OR37, —SR38, —NR39R40, —NR41COR42, C1-C10 alkyl halide, phosphonate, phosphonic acid, silane, siloxane, acrylate, catechol, or any combinations thereof; wherein each of R30-R42 is independently hydrogen, C1-C10 alkyl or C5-C10 aryl. A polymer backbone may terminate in backbone terminating groups that is a portion or moiety from a chain transfer used during polymerization of the polymer. A backbone terminating group may be a polymer-terminating group. A “polymer-terminating group” is a group or moiety at a terminal end of a polymer and which terminates a polymer backbone.
As used herein, the term “chain transfer agent” refers to a compound that reacts with a growing polymer chain to interrupt growth and transfer the reactive species to a different compound (e.g., different polymer chain, monomer, or polymerizable monomer). The chain transfer agent can help regulate the average molecular weight of a polymer by terminating polymerization. The terms “chain transfer agent” and “chain termination agent” are intended to be equivalent and interchangeable. Exemplary chain transfer agents include, but are not limited to, compounds comprising a dimethoxybutene group (e.g., dimethoxybut-2-ene), a diphenoxybutene group (e.g., diphenoxybut-2-ene). Exemplary chain transfer agents include, but are not limited to, (Z)-6,6′-((4,4′-(but-2-ene-1,4-diylbis(oxy))bis(benzoyl))bis(azanediyl))dihexanoic acid and any compound characterized by formula FX7a, FX7b, FX7c, FX7d, FX7e, FX7f, FX7g, FX7h, FX7i, or FX7j.
““Polymer side chain group” refers to a group covalently linked (directly or indirectly) to a polymer backbone group that comprises a polymer side chain, optionally imparting steric properties to the polymer. In an embodiment, for example, a polymer side chain group is characterized by a plurality of repeating units having the same, or similar, chemical composition. A polymer side chain group may be directly or indirectly linked to the polymer backbone groups. In some embodiments, polymer side chain groups provide steric bulk and/or interactions that result in an extended polymer backbone and/or a rigid polymer backbone. Some polymer side chain groups useful in the present compositions include unsubstituted or substituted polypeptide groups. Some polymers useful in the present compositions comprise repeating units obtained via anionic polymerization, cationic polymerization, free radical polymerization, group transfer polymerization, a photopolymerization, a ring-opening polymerization, metal-free photoinduced reversible-deactivation radical polymerization (photo-RDRP), photo-electron transfer reversible addition-fragmentation transfer polymerization (PET-RAFT), and/or photoinitiated polymerization-induced self-assembly (photo-PISA). A polymer side chain may terminate in a wide range of polymer side chain terminating groups including hydrogen, C1-C10 alkyl, C3-C10 cycloalkyl, C5-C10 aryl, C5-C10 heteroaryl, C1-C10 acyl, C1-C10 hydroxyl, C1-C10 alkoxy, C2-C10 alkenyl, C2-C10 alkynyl, C5-C10 alkylaryl, —CO2R30, —CONR31R32, —COR33, —SOR34, —OSR35, —SO2R36, —OR37, —SR38, —NR39R40, —NR41COR42, C1-C10 alkyl halide, phosphonate, phosphonic acid, silane, siloxane acrylate, or catechol; wherein each of R30-R42 is independently hydrogen or C1-C5 alkyl.
As used herein, the term “brush polymer” refers to a polymer comprising repeating units each independently comprising a polymer backbone group directly or indirectly covalently linked to at least one polymer side chain group. A brush polymer may be characterized by brush density, which refers to the percentage of the repeating units in a brush polymer that comprise a polymer side chain group. Brush polymers of certain aspects are characterized by a brush density greater than or equal to 50% (e.g., greater than or equal to 60%, greater than or equal to 65%, greater than or equal to 70%, greater than or equal to 75%, greater than or equal to 80%, greater than or equal to 85%, or greater than or equal to 90%), optionally for some embodiments a density greater than or equal to 70%, or optionally for some embodiments a density greater than or equal to 90%. Brush polymers of certain aspects are characterized by a brush density selected from the range 50% to 100%, optionally some embodiments a density selected from the range of 75% to 100%, or optionally for some embodiments a density selected from the range of 90% to 100%.
The terms “monomer” or “polymerizable monomer” can be used interchangeably and refer to a monomer precursor capable of undergoing polymerization as described herein to form a polymer according to embodiments described herein. The term “polymerizable monomer” is also interchangeably referred to herein as a “monomer precursor.” Generally, the “monomer” or “polymerizable monomer” comprises an olefin capable of undergoing polymerization as described herein.
The term “ROMP-polymerized monomer” refers to a group or moiety resulting from or produced by ring opening metathesis polymerization (ROMP) of a ROMP-polymerizable monomer or monomeric group or moiety. A ROMP-polymerizable monomer or monomeric group comprises a strained olefin group and may be, but is not necessarily, a cyclic (including bicyclic, tricyclic, etc.) monomer or monomeric group. For example, a ROMP-polymerizable monomer or monomeric group may be or comprise a substituted or unsubstituted norbornene, cyclic olefin, bicyclic olefin, norbornene anhydride, cyclooctene, cyclopentadiene, or any combination of these. In embodiments, for example, a monomer comprising a cyclopentene and/or cycloheptene group may be ROMP-polymerized resulting in a ROMP-polymerized monomer having a cyclopentane and/or cycloheptane group.
The term “strained” in reference to a chemical species or group, such as a “strained olefin group”, refers to a chemical species or group that has a higher internal energy, due to strain, compared to a strain-free reference. Strain refers to a form of deformation. In an embodiment, strain refers to a compression or expansion of one or more bonds compared the lowest internal energy state equilibrium state of the bond. In an embodiment, a strain-free reference is the chemical species or group in its lowest internal energy equilibrium state.
The terms “monomer unit,” “repeating monomer unit,” “repeating unit,” and “polymerized monomer” can be used interchangeably and refer to a monomeric portion of a polymer described herein which is derived from or is a product of polymerization of one individual “monomer” or “polymerizable monomer.” Each individual monomer unit of a polymer is derived from or is a product of polymerization of one polymerizable monomer. Each individual “monomer unit” or “repeating unit” of a polymer comprises one (polymerized) polymer backbone group. For example, in a polymer that comprises monomer units X and Y arranged as X-Y-X-Y-X-Y-X-Y (where each X is identical to each other X and each Y is identical to each other Y), each X and each Y is independently can be referred to as a repeating unit or monomer unit.
As used herein, the term “degree of polymerization” refers to the average number of monomer units or repeating units per polymer chain. The term “degree of polymerization” may be used to characterized number of repeating units defining an entire polymer, a polymer block thereof, or a polymerized chain moiety thereof, such as a side chain moiety or a (poly)peptide moiety. For example, in embodiments, a degree of polymerization of a polymer defined by formula FX1 (Q1-[M(Z)u]n-Q2), refers to the average number of [M(Z)u] repeating monomer units. For example, a degree of polymerization of a peptide or polypeptide refers to the number of amino acids forming the peptide. For example, a peptide whose amino acid sequence consists of the sequence GGSGSGK (SEQ ID NO:3), has a degree of polymerization of 7 because the amino acid sequence GGSGSGK (SEQ ID NO:3) has 7 amino acids. Since the degree of polymerization can vary from polymer to polymer, the degree of polymerization is generally represented by an average which can be determined by, for example, gel permeation chromatography with a multi-angle light scattering detector (GPC-MALS). The degree of polymerization can be calculated by the number-average molecular weight of polymer (e.g., determined by GPC-MALS) dividing by the molar mass of the monomer.
As used herein, the terms “peptide density” and “peptide graft density” interchangeably refer to the percentage of monomer units in the polymer chain which have a peptide covalently linked thereto. The percentage is based on the overall sum of monomer units in the polymer chain. For example, for certain polymers described herein, each P1 is the polymer side chain comprising the peptide, each P2 is a polymer side chain having a composition different from that of P1, and each S is independently a repeating unit having a composition different from P1 and P2. Thus, the peptide density of P1, or percentage of monomer units comprising the peptide of P1 (i.e., P1 for this particular example) would be represented by the formula:
where each variable refers to the number of monomer units of that type in the polymer chain.
In an aspect, the polymer side chain groups can have any suitable spacing on the polymer backbone. Typically, the space between adjacent polymer side chain groups is from 3 angstroms to 30 angstroms, and optionally 5 to 20 angstroms and optionally 5 to 10 angstroms. By way of illustration, in certain embodiments having a brush density of 100%, the polymer side chain groups typically are spaced 6±5 angstroms apart on the polymer backbone. In some embodiments the brush polymer has a high a brush density (e.g. greater than 70%), wherein the polymer side chain groups are spaced 5 to 20 angstroms apart on the polymer backbone.
The terms “analog” and “analogue” are used interchangeably and are used in accordance with their plain ordinary meaning within Chemistry and Biology and refers to a chemical compound that is structurally similar to another compound (i.e., a so-called “reference” compound) but differs in composition, e.g., in the replacement of one atom by an atom of a different element, or in the presence of a particular functional group, or the replacement of one functional group by another functional group, or the absolute stereochemistry of one or more chiral centers of the reference compound, including isomers thereof. Accordingly, an analog is a compound that is similar or comparable in function and appearance but not in structure or origin to a reference compound. The analogue can be a natural analogue or a synthetic analogue. In embodiments, a peptide analogue has five or fewer substituted or unsubstituted amino acids, or derivatives thereof, that are different, removed, added, or any combination of these, with respect to the reference peptide.
The term “sequence homology” or “sequence identity” means the proportion of amino acid matches between two amino acid sequences. When sequence homology is expressed as a percentage, e.g., 50%, the percentage denotes the fraction of matches over the length of sequence that is compared to some other sequence. Gaps (in either of the two sequences) are permitted to maximize matching; for example, wherein gap lengths of 5 amino acids or less, optionally 3 amino acids or less, are usually used.
The term “fragment” refers to a portion, but not all of, a composition or material, such as a polypeptide composition or material. In an embodiment, a fragment of a polypeptide refers to 50% or more of the sequence of amino acids, optionally 70% or more of the sequence of amino acids and optionally 90% or more of the sequence of amino acids.
As used herein, the term “group” may refer to a functional group of a chemical compound. Groups of the present compounds refer to an atom or a collection of atoms that are a part of the compound. Groups of the present invention may be attached to other atoms of the compound via one or more covalent bonds. Groups may also be characterized with respect to their valence state. The present invention includes groups characterized as monovalent, divalent, trivalent, etc. valence states.
The term “moiety” refers to a group, such as a functional group, of a chemical compound or molecule. A moiety is a collection of atoms that are part of the chemical compound or molecule. The present invention includes moieties characterized as monovalent, divalent, trivalent, etc. valence states. Generally, but not necessarily, a moiety comprises more than one functional group. A “peptide moiety” is a moiety or group that comprises or consists of a peptide.
As used herein, the term “substituted” refers to a compound wherein one or more hydrogens is replaced by another functional group, provided that the designated atom's normal valence is not exceeded. An exemplary substituent includes, but is not limited to: a halogen or halide, an alkyl, a cycloalkyl, an aryl, a heteroaryl, an acyl, an alkoxy, an alkenyl, an alkynyl, an alkylaryl, an arylene, a heteroarylene, an alkenylene, a cycloalkenylene, an alkynylene, a hydroxyl (—OH), a carbonyl (RCOR′), a sulfide (e.g., RSR′), a phosphate (ROP(═O)(OH)2), an azo (RNNR′), a cyanate (ROCN), an amine (e.g., primary, secondary, or tertiary), an imine (RC(═NH)R′), a nitrile (RCN), a pyridinyl (or pyridyl), a diamine, a triamine, an azide, a diimine, a triimine, an amide, a diimide, or an ether (ROR′); where each of R and R′ is independently a hydrogen or a substituted or unsubstituted alkyl group, aryl group, alkenyl group, or a combination of these. Optional substituent functional groups are also described below. In some embodiments, the term substituted refers to a compound wherein each of more than one hydrogen is replaced by another functional group, such as a halogen group. For example, when the substituent is oxo (i.e., ═O), then two hydrogens on the atom are replaced. The substituent group can be any substituent group described herein. For example, substituent groups can include one or more of a hydroxyl, an amino (e.g., primary, secondary, or tertiary), an aldehyde, a carboxylic acid, an ester, an amide, a ketone, nitro, an urea, a guanidine, cyano, fluoroalkyl (e.g., trifluoromethane), halo (e.g., fluoro), aryl (e.g., phenyl), heterocyclyl or heterocyclic group (i.e., cyclic group, e.g., aromatic (e.g., heteroaryl) or non-aromatic where the cyclic group has one or more heteroatoms), oxo, or combinations thereof. Combinations of substituents and/or variables are permissible provided that the substitutions do not significantly adversely affect synthesis or use of the compound.
As used herein, the term “derivative” refers to a compound wherein an atom or functional group is replaced by another atom or functional group (e.g., a substituent function group as also described below), including, but not limited to: a hydrogen, a halogen or halide, an alkyl, a cycloalkyl, an aryl, a heteroaryl, an acyl, an alkoxy, an alkenyl, an alkynyl, an alkylaryl, an arylene, a heteroarylene, an alkenylene, a cycloalkenylene, an alkynylene, a hydroxyl (—OH), a carbonyl (RCOR′), a sulfide (e.g., RSR′), a phosphate (ROP(═O)(OH)2), an azo (RNNR′), a cyanate (ROCN), an amine (e.g., primary, secondary, or tertiary), an imine (RC(═NH)R′), a nitrile (RCN), a pyridinyl (or pyridyl), a diamine, a triamine, an azide, a diimine, a triimine, an amide, a diimide, or an ether (ROR′); where each of R and R′ is independently a hydrogen or a substituted or unsubstituted alkyl group, aryl group, alkenyl group, or a combination of these. Optional substituent functional groups are also described below. Preferably, the term “derivative” refers to a compound wherein one or two atoms or functional groups are independently replaced by another atom or functional group. Preferably, the term derivative does not refer to or include replacement of a chalcogen atom (S, Se) that is a member of a heterocyclic group. Preferably, the term derivative does not refer to or include replacement of a chalcogen atom (S, Se) nor a N (nitrogen) where the chalcogen atom and the N are members same heterocyclic group. Preferably, but not necessarily, the term derivative does not include breaking a ring structure, replacement of a ring member, or removal of a ring member.
Unless otherwise specified, the term “average molecular weight,” refers to number average molecular weight. Number average molecular weight is the defined as the total weight of a sample volume divided by the number of molecules within the sample. As is customary and well known in the art, peak average molecular weight and weight average molecular weight may also be used to characterize the molecular weight of the distribution of polymers within a sample.
As is customary and well known in the art, hydrogen atoms in formulas presented throughout herein, such as, but not limited to formulas FX3a, FX3b, FX3c, FX3d, FX3e, FX3f, FX3g, and FX3h are not always explicitly shown, for example, hydrogen atoms bonded to the carbon atoms of aromatic, heteroaromatic, and alicyclic rings are not always explicitly shown in formulas presented herein. The structures provided herein, for example in the context of the description of formulas just listed and schematics and structures in the drawings, are intended to convey to one of reasonable skill in the art the chemical composition of compounds of the methods and compositions of the invention, and as will be understood by one of skill in the art, the structures provided do not indicate the specific positions and/or orientations of atoms and the corresponding bond angles between atoms of these compounds.
As used herein, the terms “alkylene” and “alkylene group” are used synonymously and refer to a divalent group derived from an alkyl group as defined herein. The invention includes compounds having one or more alkylene groups. Alkylene groups in some compounds function as linking and/or spacer groups. Compounds of the invention may have substituted and/or unsubstituted C1-C20 alkylene, C1-C10 alkylene and C1-C5 alkylene groups, for example, as one or more linking groups (e.g. L1-L2).
As used herein, the terms “cycloalkylene” and “cycloalkylene group” are used synonymously and refer to a divalent group derived from a cycloalkyl group as defined herein. The invention includes compounds having one or more cycloalkylene groups. Cycloalkyl groups in some compounds function as linking and/or spacer groups. Compounds of the invention may have substituted and/or unsubstituted C3-C20 cycloalkylene, C3-C10 cycloalkylene and C3-C5 cycloalkylene groups, for example, as one or more linking groups (e.g. L1-L2).
As used herein, the terms “arylene” and “arylene group” are used synonymously and refer to a divalent group derived from an aryl group as defined herein. The invention includes compounds having one or more arylene groups. In some embodiments, an arylene is a divalent group derived from an aryl group by removal of hydrogen atoms from two intra-ring carbon atoms of an aromatic ring of the aryl group. Arylene groups in some compounds function as linking and/or spacer groups. Arylene groups in some compounds function as chromophore, fluorophore, aromatic antenna, dye and/or imaging groups. Compounds of the invention include substituted and/or unsubstituted C3-C30 arylene, C3-C20 arylene, C3-C10 arylene and C1-C5 arylene groups, for example, as one or more linking groups (e.g. L1-L2).
As used herein, the terms “heteroarylene” and “heteroarylene group” are used synonymously and refer to a divalent group derived from a heteroaryl group as defined herein. The invention includes compounds having one or more heteroarylene groups. In some embodiments, a heteroarylene is a divalent group derived from a heteroaryl group by removal of hydrogen atoms from two intra-ring carbon atoms or intra-ring nitrogen atoms of a heteroaromatic or aromatic ring of the heteroaryl group.
Heteroarylene groups in some compounds function as linking and/or spacer groups. Heteroarylene groups in some compounds function as chromophore, aromatic antenna, fluorophore, dye and/or imaging groups. Compounds of the invention include substituted and/or unsubstituted C3-C30 heteroarylene, C3-C20 heteroarylene, C1-C10 heteroarylene and C3-C5 heteroarylene groups, for example, as one or more linking groups (e.g. L1-L2).
As used herein, the terms “alkenylene” and “alkenylene group” are used synonymously and refer to a divalent group derived from an alkenyl group as defined herein. The invention includes compounds having one or more alkenylene groups. Alkenylene groups in some compounds function as linking and/or spacer groups. Compounds of the invention include substituted and/or unsubstituted C2-C20 alkenylene, C2-C10 alkenylene and C2-C5 alkenylene groups, for example, as one or more linking groups (e.g. L1-L2).
As used herein, the terms “cycloalkenylene” and “cycloalkenylene group” are used synonymously and refer to a divalent group derived from a cycloalkenyl group as defined herein. The invention includes compounds having one or more cycloalkenylene groups. Cycloalkenylene groups in some compounds function as linking and/or spacer groups. Compounds of the invention include substituted and/or unsubstituted C3-C20 cycloalkenylene, C3-C10 cycloalkenylene and C3-C5 cycloalkenylene groups, for example, as one or more linking groups (e.g. L1-L2).
As used herein, the terms “alkynylene” and “alkynylene group” are used synonymously and refer to a divalent group derived from an alkynyl group as defined herein. The invention includes compounds having one or more alkynylene groups. Alkynylene groups in some compounds function as linking and/or spacer groups. Compounds of the invention include substituted and/or unsubstituted C2-C20 alkynylene, C2-C10 alkynylene and C2-C5 alkynylene groups, for example, as one or more linking groups (e.g. L1-L2).
As used herein, the term “halo” refers to a halogen group such as a fluoro (—F), chloro (—Cl), bromo (—Br), iodo (—I) or astato (—At).
The term “heterocyclic” refers to ring structures containing at least one other kind of atom, in addition to carbon, in the ring. Examples of such heteroatoms include nitrogen, oxygen and sulfur. Heterocyclic rings include heterocyclic alicyclic rings and heterocyclic aromatic rings. Examples of heterocyclic rings include, but are not limited to, pyrrolidinyl, piperidyl, imidazolidinyl, tetrahydrofuryl, tetrahydrothienyl, furyl, thienyl, pyridyl, quinolyl, isoquinolyl, pyridazinyl, pyrazinyl, indolyl, imidazolyl, oxazolyl, thiazolyl, pyrazolyl, pyridinyl, benzoxadiazolyl, benzothiadiazolyl, triazolyl and tetrazolyl groups. Atoms of heterocyclic rings can be bonded to a wide range of other atoms and functional groups, for example, provided as substituents.
The term “carbocyclic” refers to ring structures containing only carbon atoms in the ring. Carbon atoms of carbocyclic rings can be bonded to a wide range of other atoms and functional groups, for example, provided as substituents.
The term “alicyclic ring” refers to a ring, or plurality of fused rings, that is not an aromatic ring. Alicyclic rings include both carbocyclic and heterocyclic rings.
The term “aromatic ring” refers to a ring, or a plurality of fused rings, that includes at least one aromatic ring group. The term aromatic ring includes aromatic rings comprising carbon, hydrogen and heteroatoms. Aromatic ring includes carbocyclic and heterocyclic aromatic rings. Aromatic rings are components of aryl groups.
The term “fused ring” or “fused ring structure” refers to a plurality of alicyclic and/or aromatic rings provided in a fused ring configuration, such as fused rings that share at least two intra ring carbon atoms and/or heteroatoms.
As used herein, the term “alkoxyalkyl” refers to a substituent of the formula alkyl-O-alkyl.
As used herein, the term “polyhydroxyalkyl” refers to a substituent having from 2 to 12 carbon atoms and from 2 to 5 hydroxyl groups, such as the 2,3-dihydroxypropyl, 2,3,4-trihydroxybutyl or 2,3,4,5-tetrahydroxypentyl residue.
As used herein, the term “polyalkoxyalkyl” refers to a substituent of the formula alkyl-(alkoxy)n-alkoxy wherein n is an integer from 1 to 10, preferably 1 to 4, and more preferably for some embodiments 1 to 3.
Amino acids include glycine, alanine, valine, leucine, isoleucine, methionine, proline, phenylalanine, tryptophan, asparagine, glutamine, glycine, serine, threonine, serine, rhreonine, asparagine, glutamine, tyrosine, cysteine, lysine, arginine, histidine, aspartic acid and glutamic acid. As used herein, reference to “a side chain residue of a natural α-amino acid” specifically includes the side chains of the above-referenced amino acids. Peptides are comprised of two or more amino acids connected via peptide bonds.
Alkyl groups include straight-chain, branched and cyclic alkyl groups. Alkyl groups include those having from 1 to 30 carbon atoms. Alkyl groups include small alkyl groups having 1 to 3 carbon atoms. Alkyl groups include medium length alkyl groups having from 4-10 carbon atoms. Alkyl groups include long alkyl groups having more than 10 carbon atoms, particularly those having 10-30 carbon atoms. The term cycloalkyl specifically refers to an alky group having a ring structure such as ring structure comprising 3-30 carbon atoms, optionally 3-20 carbon atoms and optionally 2-10 carbon atoms, including an alkyl group having one or more rings. Cycloalkyl groups include those having a 3-, 4-, 5-, 6-, 7-, 8-, 9- or 10-member carbon ring(s) and particularly those having a 3-, 4-, 5-, 6-, or 7-member ring(s). The carbon rings in cycloalkyl groups can also carry alkyl groups. Cycloalkyl groups can include bicyclic and tricycloalkyl groups. Alkyl groups are optionally substituted. Substituted alkyl groups include among others those which are substituted with aryl groups, which in turn can be optionally substituted. Specific alkyl groups include methyl, ethyl, n-propyl, iso-propyl, cyclopropyl, n-butyl, s-butyl, t-butyl, cyclobutyl, n-pentyl, branched-pentyl, cyclopentyl, n-hexyl, branched hexyl, and cyclohexyl groups, all of which are optionally substituted. Substituted alkyl groups include fully halogenated or semihalogenated alkyl groups, such as alkyl groups having one or more hydrogens replaced with one or more fluorine atoms, chlorine atoms, bromine atoms and/or iodine atoms. Substituted alkyl groups include fully fluorinated or semifluorinated alkyl groups, such as alkyl groups having one or more hydrogens replaced with one or more fluorine atoms. An alkoxy group is an alkyl group that has been modified by linkage to oxygen and can be represented by the formula R—O and can also be referred to as an alkyl ether group. Examples of alkoxy groups include, but are not limited to, methoxy, ethoxy, propoxy, butoxy and heptoxy. Alkoxy groups include substituted alkoxy groups wherein the alky portion of the groups is substituted as provided herein in connection with the description of alkyl groups. As used herein MeO— refers to CH3O—. Compositions of some embodiments of the invention comprise alkyl groups as terminating groups, such as polymer backbone terminating groups and/or polymer side chain terminating groups.
Alkenyl groups include straight-chain, branched and cyclic alkenyl groups. Alkenyl groups include those having 1, 2 or more double bonds and those in which two or more of the double bonds are conjugated double bonds. Alkenyl groups include those having from 2 to 20 carbon atoms. Alkenyl groups include small alkenyl groups having 2 to 3 carbon atoms. Alkenyl groups include medium length alkenyl groups having from 4-10 carbon atoms. Alkenyl groups include long alkenyl groups having more than 10 carbon atoms, particularly those having 10-20 carbon atoms. Cycloalkenyl groups include those in which a double bond is in the ring or in an alkenyl group attached to a ring. The term cycloalkenyl specifically refers to an alkenyl group having a ring structure, including an alkenyl group having a 3-, 4-, 5-, 6-, 7-, 8-, 9- or 10-member carbon ring(s) and particularly those having a 3-, 4-, 5-, 6- or 7-member ring(s). The carbon rings in cycloalkenyl groups can also carry alkyl groups. Cycloalkenyl groups can include bicyclic and tricyclic alkenyl groups. Alkenyl groups are optionally substituted. Substituted alkenyl groups include among others those which are substituted with alkyl or aryl groups, which groups in turn can be optionally substituted. Specific alkenyl groups include ethenyl, prop-1-enyl, prop-2-enyl, cycloprop-1-enyl, but-1-enyl, but enyl, cyclobut-1-enyl, cyclobut-2-enyl, pent-1-enyl, pent-2-enyl, branched pentenyl, cyclopent-1-enyl, hex-1-enyl, branched hexenyl, cyclohexenyl, all of which are optionally substituted. Substituted alkenyl groups include fully halogenated or semihalogenated alkenyl groups, such as alkenyl groups having one or more hydrogens replaced with one or more fluorine atoms, chlorine atoms, bromine atoms and/or iodine atoms. Substituted alkenyl groups include fully fluorinated or semifluorinated alkenyl groups, such as alkenyl groups having one or more hydrogen atoms replaced with one or more fluorine atoms. Compositions of some embodiments of the invention comprise alkenyl groups as terminating groups, such as polymer backbone terminating groups and/or polymer side chain terminating groups.
Aryl groups include groups having one or more 5-, 6- or 7-member aromatic rings, including heterocyclic aromatic rings. The term heteroaryl specifically refers to aryl groups having at least one 5-, 6- or 7-member heterocyclic aromatic rings. Aryl groups can contain one or more fused aromatic rings, including one or more fused heteroaromatic rings, and/or a combination of one or more aromatic rings and one or more nonaromatic rings that may be fused or linked via covalent bonds. Heterocyclic aromatic rings can include one or more N, O, or S atoms in the ring. Heterocyclic aromatic rings can include those with one, two or three N atoms, those with one or two O atoms, and those with one or two S atoms, or combinations of one or two or three N, O or S atoms. Aryl groups are optionally substituted. Substituted aryl groups include among others those which are substituted with alkyl or alkenyl groups, which groups in turn can be optionally substituted. Specific aryl groups include phenyl, biphenyl groups, pyrrolidinyl, imidazolidinyl, tetrahydrofuryl, tetrahydrothienyl, furyl, thienyl, pyridyl, quinolyl, isoquinolyl, pyridazinyl, pyrazinyl, indolyl, imidazolyl, oxazolyl, thiazolyl, pyrazolyl, pyridinyl, benzoxadiazolyl, benzothiadiazolyl, and naphthyl groups, all of which are optionally substituted. Substituted aryl groups include fully halogenated or semihalogenated aryl groups, such as aryl groups having one or more hydrogens replaced with one or more fluorine atoms, chlorine atoms, bromine atoms and/or iodine atoms. Substituted aryl groups include fully fluorinated or semifluorinated aryl groups, such as aryl groups having one or more hydrogens replaced with one or more fluorine atoms. Aryl groups include, but are not limited to, aromatic group-containing or heterocyclic aromatic group-containing groups corresponding to any one of the following: benzene, naphthalene, naphthoquinone, diphenylmethane, fluorene, anthracene, anthraquinone, phenanthrene, tetracene, tetracenedione, pyridine, quinoline, isoquinoline, indoles, isoindole, pyrrole, imidazole, oxazole, thiazole, pyrazole, pyrazine, pyrimidine, purine, benzimidazole, furans, benzofuran, dibenzofuran, carbazole, acridine, acridone, phenanthridine, thiophene, benzothiophene, dibenzothiophene, xanthene, xanthone, flavone, coumarin, azulene or anthracycline. As used herein, a group corresponding to the groups listed above expressly includes an aromatic or heterocyclic aromatic group, including monovalent, divalent and polyvalent groups, of the aromatic and heterocyclic aromatic groups listed herein are provided in a covalently attached configuration in the compounds of the invention at any suitable point of attachment. In embodiments, aryl groups contain between 5 and 30 carbon atoms. In embodiments, aryl groups contain one aromatic or heteroaromatic six-membered ring and one or more additional five- or six-membered aromatic or heteroaromatic ring. In embodiments, aryl groups contain between five and eighteen carbon atoms in the rings. Aryl groups optionally have one or more aromatic rings or heterocyclic aromatic rings having one or more electron donating groups, electron withdrawing groups and/or targeting ligands provided as substituents. Compositions of some embodiments of the invention comprise aryl groups as terminating groups, such as polymer backbone terminating groups and/or polymer side chain terminating groups.
Arylalkyl groups are alkyl groups substituted with one or more aryl groups wherein the alkyl groups optionally carry additional substituents and the aryl groups are optionally substituted. Specific alkylaryl groups are phenyl-substituted alkyl groups, e.g., phenylmethyl groups. Alkylaryl groups are alternatively described as aryl groups substituted with one or more alkyl groups wherein the alkyl groups optionally carry additional substituents and the aryl groups are optionally substituted. Specific alkylaryl groups are alkyl-substituted phenyl groups such as methylphenyl. Substituted arylalkyl groups include fully halogenated or semihalogenated arylalkyl groups, such as arylalkyl groups having one or more alkyl and/or aryl groups having one or more hydrogens replaced with one or more fluorine atoms, chlorine atoms, bromine atoms and/or iodine atoms. Compositions of some embodiments of the invention comprise arylalkyl groups as terminating groups, such as polymer backbone terminating groups and/or polymer side chain terminating groups.
As to any of the groups described herein which contain one or more substituents, it is understood that such groups do not contain any substitution or substitution patterns which are sterically impractical and/or synthetically non-feasible. Optional substitution of alkyl groups includes substitution with one or more alkenyl groups, aryl groups or both, wherein the alkenyl groups or aryl groups are optionally substituted. Optional substitution of alkenyl groups includes substitution with one or more alkyl groups, aryl groups, or both, wherein the alkyl groups or aryl groups are optionally substituted. Optional substitution of aryl groups includes substitution of the aryl ring with one or more alkyl groups, alkenyl groups, or both, wherein the alkyl groups or alkenyl groups are optionally substituted.
Optional substituents for any alkyl, alkenyl and aryl group includes substitution with one or more of the following substituents, among others:
halogen, including fluorine, chlorine, bromine or iodine;
pseudohalides, including —CN;
—COOR where R is a hydrogen or an alkyl group or an aryl group and more specifically where R is a methyl, ethyl, propyl, butyl, or phenyl group all of which groups are optionally substituted;
—COR where R is a hydrogen or an alkyl group or an aryl group and more specifically where R is a methyl, ethyl, propyl, butyl, or phenyl group all of which groups are optionally substituted;
—CON(R)2 where each R, independently of each other R, is a hydrogen or an alkyl group or an aryl group and more specifically where R is a methyl, ethyl, propyl, butyl, or phenyl group all of which groups are optionally substituted; and where R and R can form a ring which can contain one or more double bonds and can contain one or more additional carbon atoms;
—OCON(R)2 where each R, independently of each other R, is a hydrogen or an alkyl group or an aryl group and more specifically where R is a methyl, ethyl, propyl, butyl, or phenyl group all of which groups are optionally substituted; and where R and R can form a ring which can contain one or more double bonds and can contain one or more additional carbon atoms;
—N(R)2 where each R, independently of each other R, is a hydrogen, or an alkyl group, or an acyl group or an aryl group and more specifically where R is a methyl, ethyl, propyl, butyl, phenyl or acetyl group, all of which are optionally substituted; and where R and R can form a ring which can contain one or more double bonds and can contain one or more additional carbon atoms;
—SR, where R is hydrogen or an alkyl group or an aryl group and more specifically where R is hydrogen, methyl, ethyl, propyl, butyl, or a phenyl group, which are optionally substituted;
—SO2R, or —SOR where R is an alkyl group or an aryl group and more specifically where R is a methyl, ethyl, propyl, butyl, or phenyl group, all of which are optionally substituted;
—OCOOR where R is an alkyl group or an aryl group;
—SO2N(R)2 where each R, independently of each other R, is a hydrogen, or an alkyl group, or an aryl group all of which are optionally substituted and wherein R and R can form a ring which can contain one or more double bonds and can contain one or more additional carbon atoms; and
—OR where R is H, an alkyl group, an aryl group, or an acyl group all of which are optionally substituted. In a particular example R can be an acyl yielding —OCOR″ where R″ is a hydrogen or an alkyl group or an aryl group and more specifically where R″ is methyl, ethyl, propyl, butyl, or phenyl groups all of which groups are optionally substituted.
Specific substituted alkyl groups include haloalkyl groups, particularly trihalomethyl groups and specifically trifluoromethyl groups. Specific substituted aryl groups include mono-, di-, tri, tetra- and pentahalo-substituted phenyl groups; mono-, di-, tri-, tetra-, penta-, hexa-, and hepta-halo-substituted naphthalene groups; 3- or 4-halo-substituted phenyl groups, 3- or 4-alkyl-substituted phenyl groups, 3- or 4-alkoxy-substituted phenyl groups, 3- or 4-RCO-substituted phenyl, 5- or 6-halo-substituted naphthalene groups. More specifically, substituted aryl groups include acetylphenyl groups, particularly 4-acetylphenyl groups; fluorophenyl groups, particularly 3-fluorophenyl and 4-fluorophenyl groups; chlorophenyl groups, particularly 3-chlorophenyl and 4-chlorophenyl groups; methylphenyl groups, particularly 4-methylphenyl groups; and methoxyphenyl groups, particularly 4-methoxyphenyl groups.
As to any of the above groups which contain one or more substituents, it is understood that such groups do not contain any substitution or substitution patterns which are sterically impractical and/or synthetically non-feasible.
Certain compounds of the present invention possess asymmetric carbon atoms (optical or chiral centers) or double bonds; the enantiomers, racemates, diastereomers, tautomers, geometric isomers, stereoisometric forms that may be defined, in terms of absolute stereochemistry, as (R)- or (S)- or, as
Many of the molecules disclosed herein contain one or more ionizable groups. Ionizable groups include groups from which a proton can be removed (e.g., —COOH) or added (e.g., amines) and groups that can be quaternized (e.g., amines). All possible ionic forms of such molecules and salts thereof are intended to be included individually in the disclosure herein. With regard to salts of the compounds herein, one of ordinary skill in the art can select from among a wide variety of available counterions that are appropriate for preparation of salts of this invention for a given application. In specific applications, the selection of a given anion or cation for preparation of a salt can result in increased or decreased solubility of that salt.
As used herein, the term “isomers” refers to compounds having the same number and kind of atoms, and hence the same molecular weight, but differing in respect to the structural arrangement or configuration of the atoms. Isomers include structural isomers and stereoisomers such as enantiomers.
The term “tautomer,” as used herein, refers to one of two or more structural isomers which exist in equilibrium and which are readily converted from one isomeric form to another. It will be apparent to one skilled in the art that certain compounds of this invention may exist in tautomeric forms, all such tautomeric forms of the compounds being within the scope of the invention.
Unless otherwise stated, structures depicted herein are also meant to include all stereochemical forms of the structure; i.e., the R and S configurations for each asymmetric center. Therefore, single stereochemical isomers as well as enantiomeric and diastereomeric mixtures of the present compounds are within the scope of the invention.
Unless otherwise stated, structures depicted herein are also meant to include compounds which differ only in the presence of one or more isotopically enriched atoms. For example, compounds having the present structures except for the replacement of a hydrogen by a deuterium or tritium, or the replacement of a carbon by 13C- or 14C-enriched carbon are within the scope of this invention.
The compounds of the present invention may also contain unnatural proportions of atomic isotopes at one or more of the atoms that constitute such compounds. For example, the compounds may be radiolabeled with radioactive isotopes, such as for example tritium (3H), iodine-125 (125I), or carbon-14 (14C). All isotopic variations of the compounds of the present invention, whether radioactive or not, are encompassed within the scope of the present invention.
The symbol “” denotes the point of attachment of one or more chemical moieties, one or more functional groups, one or more atoms, one or more ions, an unpaired electron, or one or more other chemical species to the represented molecule, compound, or chemical formula. For example, in the formula
“X” represents a molecule or compound, the symbol “” denotes a point of attachment of one or more chemical moieties, one or more functional groups, one or more atoms, one or more ions, an unpaired electron, or one or more other chemical species to X (where X corresponds to the represented molecule, compound, or chemical formula) via covalent bonding, wherein the covalent bonding can be any feasible covalent bond, including, but not limited to, a single bond, a double bond, or a triple bond. As an illustrative example, in the moiety
the carbon labeled “1” has point of attachment which can be a double bond to another species, such a double bond to an oxygen, or two single bonds to two independent species, such as two distinct single bonds each to a hydrogen. As another illustrative example, when two points of attachment are shown on a single atom of a molecule, such as in the moiety
where the carbon labeled “1” has two points of attachment shown, the shown points of attachment on the same single atom (e.g., carbon 1), can be interpreted as representing either a preferable embodiment of two distinct bonds to that same single atom (e.g., two hydrogens bonded to carbon 1) or an optional embodiment of a single point of attachment to said same single atom (e.g., the two points of attachment on carbon 1 can optionally be consolidated as representing one double to carbon 1, such as a double bond to oxygen). As used herein, the various functional groups represented will be understood to have a point of attachment at the functional group having the hyphen or dash (-) or a dash used in combination with an asterisk (*). In the case of —CH2CH2CH3, it will be understood that the point of attachment is the CH2 group at the far left. If a group is recited without an asterisk or a dash, then the attachment point is indicated by the plain and ordinary meaning” of the recited group.
Where substituent groups are specified by their conventional chemical formulae, written from left to right, they equally encompass the chemically identical substituents that would result from writing the structure from right to left, e.g., —CH20- is equivalent to —OCH2—.
Where used, a bond represented by “” (a squiggly or wavy line) refers to a bond having any angle or geometry, such as in the case of a chemical species exhibiting stereochemistry such as chirality. For example, the compound characterized by formula (FX100):
may correspond to one or more compounds, such as those characterized by the formulas (FX100a), (FX100b), (FX100c), and (FX100d):
It must also be noted that a bond represented as a non-wavy or non-squiggly line, such as a “”, may exhibit more than one stereochemical configuration, such as chirality. In other words, the compound characterized by formula (FX100e):
may correspond to one or more compounds, such as those characterized by the formulas (FX100a), (FX100b), (FX100c), and (FX100d).
When referring to a material, such as a polymer, being aqueous, the term “aqueous” refers to said material being dispersed, dissolved, or otherwise solvated by water. An “aqueous solution” refers to a solution that comprises water as solvent and one or more solute species dispersed, dissolved, or otherwise solvated by the water. Optionally, but not necessarily, an aqueous solution or an aqueous solvent includes 20 vol. % or less, optionally 15 vol. % or less, optionally 10 vol. % or less, preferably 5 vol. % or less, of a non-aqueous or organic solvent.
The terms “treating” or “treatment” refers to any indicia of success in the treatment or amelioration of an injury, disease, pathology or condition, including any objective or subjective parameter such as abatement; remission; diminishing of symptoms or making the injury, pathology or condition more tolerable to a subject, such as a patient in need of treatment; slowing in the rate of degeneration or decline; making the final point of degeneration less debilitating; improving a subject's physical or mental well-being. The treatment or amelioration of symptoms can be based on objective or subjective parameters; including the results of a physical examination, neuropsychiatric exams, and/or a psychiatric evaluation. The term “treating,” and conjugations thereof, include prevention of an injury, pathology, condition, or disease.
An “effective amount” is an amount sufficient to accomplish a stated purpose (e.g. achieve the effect for which it is administered, treat a disease, reduce enzyme activity, increase enzyme activity, reduce transcriptional activity, increase transcriptional activity, reduce one or more symptoms of a disease or condition). An example of an “effective amount” is an amount sufficient to contribute to the treatment, prevention, or reduction of a symptom or symptoms of a disease, which could also be referred to as a “therapeutically effective amount.” A “reduction” of a symptom or symptoms (and grammatical equivalents of this phrase) means decreasing of the severity or frequency of the symptom(s), or elimination of the symptom(s). A “prophylactically effective amount” of a drug is an amount of a drug that, when administered to a subject, will have the intended prophylactic effect, e.g., preventing or delaying the onset (or reoccurrence) of an injury, disease, pathology or condition, or reducing the likelihood of the onset (or reoccurrence) of an injury, disease, pathology, or condition, or their symptoms. The full prophylactic effect does not necessarily occur by administration of one dose, and may occur only after administration of a series of doses. Thus, a prophylactically effective amount may be administered in one or more administrations. An “activity decreasing amount,” as used herein, refers to an amount of antagonist (inhibitor) required to decrease the activity of an enzyme or protein (e.g. transcription factor) relative to the absence of the antagonist. An “activity increasing amount,” as used herein, refers to an amount of agonist (activator) required to increase the activity of an enzyme or protein (e.g. transcription factor) relative to the absence of the agonist. A “function disrupting amount,” as used herein, refers to the amount of antagonist (inhibitor) required to disrupt the function of an enzyme or protein (e.g. transcription factor) relative to the absence of the antagonist. A “function increasing amount,” as used herein, refers to the amount of agonist (activator) required to increase the function of an enzyme or protein (e.g. transcription factor) relative to the absence of the agonist. The exact amounts will depend on the purpose of the treatment, and will be ascertainable by one skilled in the art using known techniques (see, e.g., Lieberman, Pharmaceutical Dosage Forms (vols. 1-3, 1992); Lloyd, The Art, Science and Technology of Pharmaceutical Compounding (1999); Pickar, Dosage Calculations (1999); and Remington: The Science and Practice of Pharmacy, 20th Edition, 2003, Gennaro, Ed., Lippincott, Williams & Wilkins).
As defined herein, the term “inhibition”, “inhibit”, “inhibiting” and the like in reference to a protein-inhibitor (e.g. antagonist) interaction means negatively affecting (e.g. decreasing) the activity or function of the protein relative to the activity or function of the protein in the absence of the inhibitor. In some embodiments inhibition refers to reduction of a disease or symptoms of disease. In some embodiments, inhibition refers to a reduction in the activity of a signal transduction pathway or signaling pathway. Thus, inhibition includes, at least in part, partially or totally blocking stimulation, decreasing, preventing, or delaying activation, or inactivating, desensitizing, or down-regulating signal transduction or enzymatic activity or the amount of a protein.
As defined herein, the term “activation”, “activate”, “activating” and the like in reference to a protein-activator (e.g. agonist) interaction means positively affecting (e.g. increasing) the activity or function of the protein
The term “modulator” refers to a composition that increases or decreases the level of a target molecule or the function of a target molecule.
“Patient”, “subject”, or “subject in need thereof” refers to a living organism suffering from or prone to a disease or condition that can be treated by administration of a compound or pharmaceutical composition, as provided herein. Non-limiting examples include humans, other mammals, bovines, rats, mice, dogs, monkeys, goat, sheep, cows, deer, and other non-mammalian animals. In some embodiments, a patient is human. In some embodiments, a patient is a mammal. In some embodiments, a patient is a mouse. In some embodiments, a patient is an experimental animal. In some embodiments, a patient is a rat. In some embodiments, a patient is a test animal.
“Pharmaceutically acceptable excipient” and “pharmaceutically acceptable carrier” refer to a substance that aids the administration of an active agent to and absorption by a subject and can be included in the compositions of the present invention without causing a significant adverse toxicological effect on the patient. Non-limiting examples of pharmaceutically acceptable excipients include water, NaCl, normal saline solutions, lactated Ringer's, normal sucrose, normal glucose, binders, fillers, disintegrants, lubricants, coatings, sweeteners, flavors, salt solutions (such as Ringer's solution), alcohols, oils, gelatins, carbohydrates such as lactose, amylose or starch, fatty acid esters, hydroxymethycellulose, polyvinyl pyrrolidine, and colors, and the like. Such preparations can be sterilized and, if desired, mixed with auxiliary agents such as lubricants, preservatives, stabilizers, wetting agents, emulsifiers, salts for influencing osmotic pressure, buffers, coloring, and/or aromatic substances and the like that do not deleteriously react with the compounds of the invention. One of skill in the art will recognize that other pharmaceutical excipients are useful in the present invention.
The term “preparation” is intended to include the formulation of the active compound with encapsulating material as a carrier providing a capsule in which the active component with or without other carriers, is surrounded by a carrier, which is thus in association with it. Similarly, cachets and lozenges are included. Tablets, powders, capsules, pills, cachets, and lozenges can be used as solid dosage forms suitable for oral administration.
As used herein, the term “administering” means oral administration, administration as a suppository, topical contact, intravenous, parenteral, intraperitoneal, intramuscular, intralesional, intrathecal, intracranial, intranasal or subcutaneous administration, or the implantation of a slow-release device, e.g., a mini-osmotic pump, to a subject. Administration is by any route, including parenteral and transmucosal (e.g., buccal, sublingual, palatal, gingival, nasal, vaginal, rectal, or transdermal). In embodiments, administration includes direct administration to a tumor. Parenteral administration includes, e.g., intravenous, intramuscular, intra-arteriole, intradermal, subcutaneous, intraperitoneal, intraventricular, and intracranial. Other modes of delivery include, but are not limited to, the use of liposomal formulations, intravenous infusion, transdermal patches, etc. By “co-administer” it is meant that a composition described herein is administered at the same time, just prior to, or just after the administration of one or more additional therapies (e.g. anti-cancer agent or chemotherapeutic). The compound of the invention can be administered alone or can be coadministered to the patient. Coadministration is meant to include simultaneous or sequential administration of the compound individually or in combination (more than one compound or agent). Thus, the preparations can also be combined, when desired, with other active substances (e.g. to reduce metabolic degradation). The compositions of the present invention can be delivered by transdermally, by a topical route, formulated as applicator sticks, solutions, suspensions, emulsions, gels, creams, ointments, pastes, jellies, paints, powders, and aerosols. Oral preparations include tablets, pills, powder, dragees, capsules, liquids, lozenges, cachets, gels, syrups, slurries, suspensions, etc., suitable for ingestion by the patient. Solid form preparations include powders, tablets, pills, capsules, cachets, suppositories, and dispersible granules. Liquid form preparations include solutions, suspensions, and emulsions, for example, water or water/propylene glycol solutions. The compositions of the present invention may additionally include components to provide sustained release and/or comfort. Such components include high molecular weight, anionic mucomimetic polymers, gelling polysaccharides and finely-divided drug carrier substrates. These components are discussed in greater detail in U.S. Pat. Nos. 4,911,920; 5,403,841; 5,212,162; and 4,861,760. The entire contents of these patents are incorporated herein by reference in their entirety for all purposes. The compositions of the present invention can also be delivered as microspheres for slow release in the body. For example, microspheres can be administered via intradermal injection of drug-containing microspheres, which slowly release subcutaneously (see Rao, J. Biomater Sci. Polym. Ed. 7:623-645, 1995; as biodegradable and injectable gel formulations (see, e.g., Gao Pharm. Res. 12:857-863, 1995); or, as microspheres for oral administration (see, e.g., Eyles, J. Pharm. Pharmacol. 49:669-674, 1997). In another embodiment, the formulations of the compositions of the present invention can be delivered by the use of liposomes which fuse with the cellular membrane or are endocytosed, i.e., by employing receptor ligands attached to the liposome, that bind to surface membrane protein receptors of the cell resulting in endocytosis. By using liposomes, particularly where the liposome surface carries receptor ligands specific for target cells, or are otherwise preferentially directed to a specific organ, one can focus the delivery of the compositions of the present invention into the target cells in vivo. (See, e.g., Al-Muhammed, J. Microencapsul. 13:293-306, 1996; Chonn, Curr. Opin. Biotechnol. 6:698-708, 1995; Ostro, Am. J. Hosp. Pharm. 46:1576-1587, 1989).
As used herein, the term “conjugated” when referring to two moieties means the two moieties are bonded, wherein the bond or bonds connecting the two moieties may be covalent or non-covalent. In embodiments, the two moieties are covalently attached to each other (e.g. directly or through a covalently attached intermediary). In embodiments, the two moieties are non-covalently attached (e.g. through ionic bond(s), van der waal's bond(s)/interactions, hydrogen bond(s), polar bond(s), or combinations or mixtures thereof).
The term “non-peptide therapeutic moiety” refers to a therapeutic moiety that is not a peptide or a polypeptide having at least 2 amino acids. A “therapeutic moiety” refers to a chemical moiety that: (i) can function as a therapeutic agent (or perform a therapeutic function), such as for a treatment when administered to or otherwise provided to a patient or subject; and (ii) is covalently attached to host or carrier compound or molecule, such as a polymer according to any of the embodiments disclosed herein. A therapeutic moiety is optionally a monovalent moiety. The therapeutic moiety is a therapeutic agent that is a therapeutically or pharmaceutically active therapeutic agent when attached to the polymer, when released from the polymer (such as via a chemical reaction), or both. A therapeutic agent is capable of treating or managing a condition, such as a disease, in a living patient or subject, such as a human or animal. A non-peptide therapeutic moiety is optionally a small molecule having a molecular weight below 4500 Da, optionally below 2000 Da, optionally below 1000 Da. Unless otherwise stated, a peptide or polypeptide of the invention can be a therapeutic peptide, which is a therapeutic moiety that is or that comprises a peptide or polypeptide. Optionally the term “peptide” can refer to a polypeptide.
Optionally in any of the polymers, methods, and liquid compositions disclosed herein, n and a fraction (“P”) of all side chain moieties in the polymer that are side chain moieties comprising a peptide moiety are selected to provide for cellular uptake. Optionally, cellular uptake refers to cellular uptake of or penetration of a biological by at least a portion of the polymer, the majority of the polymer, or the entirety of the polymer. Cellular uptake can be measured or quantified, such as via absorbance or fluorescence signal unique to a portion of the polymer (such as the drug) using different cellular assays, UV-Vis absorption spectroscopy, fluorescence spectroscopy, radio labeling, mass-spectroscopy, and/or inductively coupled plasma mass spectrometry. Optionally in any of the polymers, methods, and liquid compositions disclosed herein, at least one of the plurality of peptide moieties is a non-cell-penetrating peptide. Optionally in any of the polymers, methods, and liquid compositions disclosed herein, each peptide moiety of at least a majority of the plurality of peptide moieties is a non-cell-penetrating peptide. Optionally in any of the polymers, methods, and liquid compositions disclosed herein, the polymer has a net positive charge. Preferably, the net positive charge of the polymer is present at least when the polymer is exposed to physiological conditions, including normal physiological conditions. Preferably, any positive charge of the polymer is present at least when the polymer is exposed to physiological conditions, including normal physiological conditions. Preferably in any of the polymers, methods, and liquid compositions disclosed herein, at least one of the plurality of peptide moieties has a positive charge. The presence of a positive charge can increase or otherwise enhance the therapeutic activity or function of the polymer, or portions thereof such as of the non-peptide therapeutic(s) and any therapeutic peptides, if present. In embodiments, the presence of a positive charge on the polymer can increase or otherwise enhance the therapeutic activity or function of the polymer, or portions thereof at least because of the enhanced or improved cellular uptake efficiency of the polymer due to the presence of the positive charge. Preferably, polymers disclosed herein can penetrate or be taken up by a biological cell even when any, a majority, or even when all of the peptide sequences on said polymer do not correspond to cell-penetrating peptides. This is because peptide sequences that are not cell-penetrating peptides but that have at least a single positive charge are able to enter cells (cellular uptake) once polymerized as a high density brush of peptides, wherein, in contrast, the monomeric peptide alone would be unable to enter the cell. See also Blum, et al. (“Activating peptides for cellular uptake via polymerization into high density brushes.” A. P. Blum, J. K. Kammeyer and N. C. Gianneschi, Chem. Sci., 2016, 7, 989-994), which is incorporated herein by reference in its entirety to the extent not inconsistent herewith.
The term “cellular uptake” refers to any process or mechanism that results in a molecule, peptide, therapeutic agent, compound, polymer, or portion thereof, or material being transported either actively of passively across the cellular membrane of a biological cell.
The terms “cell” and “biological cell” are used interchangeably are refer to a cell carrying out metabolic or other function sufficient to preserve or replicate its genomic DNA. A cell can be identified by well-known methods in the art including, for example, presence of an intact membrane, staining by a particular dye, ability to produce progeny or, in the case of a gamete, ability to combine with a second gamete to produce a viable offspring. Cells may include prokaryotic and eukaryotic cells. Prokaryotic cells include but are not limited to bacteria. Eukaryotic cells include but are not limited to yeast cells and cells derived from plants and animals, for example mammalian, insect (e.g., spodoptera) and human cells. A “viable cell” is a living biological cell.
The term “pharmaceutically acceptable salts” is meant to include salts of the active compounds that are prepared with relatively nontoxic acids or bases, depending on the particular substituents found on the compounds described herein. When compounds of the present invention contain relatively acidic functionalities, base addition salts can be obtained by contacting the neutral form of such compounds with a sufficient amount of the desired base, either neat or in a suitable inert solvent. Examples of pharmaceutically acceptable base addition salts include sodium, potassium, calcium, ammonium, organic amino, or magnesium salt, or a similar salt. When compounds of the present invention contain relatively basic functionalities, acid addition salts can be obtained by contacting the neutral form of such compounds with a sufficient amount of the desired acid, either neat or in a suitable inert solvent. Examples of pharmaceutically acceptable acid addition salts include those derived from inorganic acids like hydrochloric, hydrobromic, nitric, carbonic, monohydrogencarbonic, phosphoric, monohydrogenphosphoric, dihydrogenphosphoric, sulfuric, monohydrogensulfuric, hydriodic, or phosphorous acids and the like, as well as the salts derived from relatively nontoxic organic acids like acetic, propionic, isobutyric, maleic, malonic, benzoic, succinic, suberic, fumaric, lactic, mandelic, phthalic, benzenesulfonic, p-tolylsulfonic, citric, tartaric, methanesulfonic, and the like. Also included are salts of amino acids such as arginate and the like, and salts of organic acids like glucuronic or galactunoric acids and the like (see, e.g., Berge et al., Journal of Pharmaceutical Science 66:1-19 (1977)). Certain specific compounds of the present invention contain both basic and acidic functionalities that allow the compounds to be converted into either base or acid addition salts. Other pharmaceutically acceptable carriers known to those of skill in the art are suitable for the present invention. Salts tend to be more soluble in aqueous or other protonic solvents that are the corresponding free base forms. In other cases, the preparation may be a lyophilized powder in 1 mM-50 mM histidine, 0.1%-2% sucrose, 2%-7% mannitol at a pH range of 4.5 to 5.5, that is combined with buffer prior to use.
Thus, the compounds of the present invention may exist as salts, such as with pharmaceutically acceptable acids. The present invention includes such salts. Examples of such salts include hydrochlorides, hydrobromides, sulfates, methanesulfonates, nitrates, maleates, acetates, citrates, fumarates, tartrates (e.g., (+)-tartrates, (−)-tartrates, or mixtures thereof including racemic mixtures), succinates, benzoates, and salts with amino acids such as glutamic acid. These salts may be prepared by methods known to those skilled in the art.
The neutral forms of the compounds are preferably regenerated by contacting the salt with a base or acid and isolating the parent compound in the conventional manner. The parent form of the compound differs from the various salt forms in certain physical properties, such as solubility in polar solvents.
In addition to salt forms, the present invention provides compounds, which are in a prodrug form. Prodrugs of the compounds described herein are those compounds that readily undergo chemical changes under physiological conditions to provide the compounds of the present invention. Additionally, prodrugs can be converted to the compounds of the present invention by chemical or biochemical methods in an ex vivo environment. For example, prodrugs can be slowly converted to the compounds of the present invention when placed in a transdermal patch reservoir with a suitable enzyme or chemical reagent.
Certain compounds of the present invention can exist in unsolvated forms as well as solvated forms, including hydrated forms. In general, the solvated forms are equivalent to unsolvated forms and are encompassed within the scope of the present invention. Certain compounds of the present invention may exist in multiple crystalline or amorphous forms. In general, all physical forms are equivalent for the uses contemplated by the present invention and are intended to be within the scope of the present invention.
As used herein, the term “salt” refers to acid or base salts of the compounds used in the methods of the present invention. Illustrative examples of acceptable salts are mineral acid (hydrochloric acid, hydrobromic acid, phosphoric acid, and the like) salts, organic acid (acetic acid, propionic acid, glutamic acid, citric acid and the like) salts, quaternary ammonium (methyl iodide, ethyl iodide, and the like) salts.
The term “substantially” refers to a property, condition, or value that is within 20%, 10%, within 5%, within 1%, optionally within 0.1%, or is equivalent to a reference property, condition, or value. The term “substantially equal”, “substantially equivalent”, or “substantially unchanged”, when used in conjunction with a reference value describing a property or condition, refers to a value that is within 20%, within 10%, optionally within 5%, optionally within 1%, optionally within 0.1%, or optionally is equivalent to the provided reference value. For example, a diameter is substantially equal to 100 nm (or, “is substantially 100 nm”) if the value of the diameter is within 20%, optionally within 10%, optionally within 5%, optionally within 1%, within 0.1%, or optionally equal to 100 nm. The term “substantially greater”, when used in conjunction with a reference value describing a property or condition, refers to a value that is at least 1%, optionally at least 5%, optionally at least 10%, or optionally at least 20% greater than the provided reference value. The term “substantially less”, when used in conjunction with a reference value describing a property or condition, refers to a value that is at least 1%, optionally at least 5%, optionally at least 10%, or optionally at least 20% less than the provided reference value. As used herein, the term “about” means a range of values including the specified value, which a person of ordinary skill in the art would consider reasonably similar to the specified value. In embodiments, about means within a standard deviation using measurements generally acceptable in the art. In embodiments, about means a range extending to +/−10% of the specified value. In embodiments, about means the specified value. In embodiments, the terms “about” and “substantially” are interchangeable and have identical means. For example, a particle having a size of about 1 μm may have a size is within 20%, optionally within 10%, optionally within 5%, optionally within 1%, optionally within 0.1%, or optionally equal to 1 μm.
Additional useful background information, terminology (to the extent not inconsistent with the terms as defined herein), and embodiments (to the extent not inconsistent with the embodiments described herein) may be found in International Patent Publication No. WO 2021/030326 A1, filed Aug. 11, 2020 (Gianneschi, et al.; PCT/US2020/045729), which is incorporated herein by reference in its entirety to the extent not inconsistent herewith.
In the following description, numerous specific details of the devices, device components and methods of the present invention are set forth in order to provide a thorough explanation of the precise nature of the invention. It will be apparent, however, to those of skill in the art that the invention can be practiced without these specific details.
Without wishing to be bound by any particular theory, there may be discussion herein of beliefs or understandings of underlying principles relating to the devices and methods disclosed herein. It is recognized that regardless of the ultimate correctness of any mechanistic explanation or hypothesis, an embodiment of the invention can nonetheless be operative and useful.
Small molecule therapeutics commonly used in the treatment of human diseases such as cancer often suffer from poor solubility and stability in blood. Systems for improving drug delivery often rely on covalent-conjugation to or encapsulation by carriers. In the case of polymeric carriers therapeutics are often incorporated directly as a monomer or through a post polymerization conjugation reaction and result in systems with a statistical average of the therapeutic. To address these issues a polymer-drug conjugate was designed and synthesized by ring-opening metathesis polymerization incorporating a single drug moiety on the chain end of a water-soluble polymer. A chain termination agent containing Paclitaxel (PTX) for ROMP was designed and synthesized then used to add a single PTX moiety to the end of water soluble peptide based ROMP polymers with different overall charges. Polymers end-labelled by PTX could be separated from unlabeled polymers and polymers carrying positive charges were shown to have greater cytotoxicity compared with the neutral and negatively charged polymers.
Applications of the polymers and methods disclosed herein include small molecule therapeutic delivery systems. Advantages of the polymers and methods disclosed herein include: ability to incorporate a single drug moiety onto the end of a ROMP polymer; tunability of charge of the polymer for tunable cellular uptake; end-labelled and non-labelled polymers can be separated; drug-end-labelled polymers are can be dispersed as single chains in aqueous environments; the polymers show resistance to proteolysis; and the polymers show enhanced cellular internalization.
According to certain embodiments disclosed herein, a paclitaxel chain termination agent was used to add a single drug moiety to the end of a number of peptide containing polymers with different overall charges that were synthesized by ROMP. Polymers end-labelled with the drug were separated from the un-labelled polymers by HPLC. Drug-terminated peptide brush polymers carrying positive charges exhibited enhanced cell uptake and cytotoxicity as compared to their neutral and negatively charged analogues.
According to certain embodiments disclosed herein, a Paclitaxel chain termination agent (III,
To assess the utility of labelling ROMP polymers with a single PTX moiety, peptide brush polymers are presented. A series of peptides bearing different charges and number of charges were synthesized, including GGSGSGS (SEQ ID NO:1), GGSGSGE (SEQ ID NO:2), GGSGSGK (SEQ ID NO:3), GGSGSGR (SEQ ID NO:4), GGSGSGRR (SEQ ID N0:5). These amino acid sequences were anchored with a carboxylic acid-functionalized norbornenes through solid phase peptide synthesis (
ROMP of peptide monomers was conducted in the presence of a modified 2nd generation Grubbs catalyst (
The polymers successfully labelled with PTX could be separated from unlabelled polymers by reverse phase HPLC due to the difference in hydrophobicity. The three main peaks were further identified by MALDI-TOF mass spectroscopy as polymers without dye or drug, polymers with drug only, and polymers with both dye and drug (
According to certain embodiments disclosed herein, the cytotoxicity of polymer-drug conjugates was assessed in A549 lung carcinoma cells. All peptide brush polymers without paclitaxel exhibited no toxicity, showing near 100% cell viability after incubation for 3 days, indicative of excellent cytocompatibility of peptide brush polymers (
Experimental methods, according to certain embodiments disclosed herein:
Peptide monomers were synthesized on a Biotage Alstra peptide synthesizer. Analytical RP-HPLC analysis was performed on a Waters Symmetry column (150×4.60 mm) using a Waters 1525 Binary HPLC pump equipped with Waters 2998 Photodiode Array Detector. Peptide monomers were purified on a Semi-Prep RP-HPLC using a Waters SunFire column (250×19 mm). The solvent system for both HPLC instruments consists of 0.1% TFA in water (buffer A) and 0.1% TFA in acetonitrile (buffer B). 1H and 13C NMR spectra were recorded on a Bruker 400 MHz NMR spectrometer. Chemical shifts were reported in ppm relative to the residual solvent peak or TMS peak. ESI-MS spectra were performed on a LCQ-Advantage mass spectrometer. MALDI-TOF-MS spectra were performed on a Bruker Ultraflextreme mass spectrometer. MALDI-TOF-MS spectra of polymers were performed using a matrix solution of 2,5-dihydroxybenzoic acid in 1:3 water:acetonitrile with 0.1% TFA (30 mg/ml), and polymer solutions in water (1 mg/ml). The solutions were mixed in a 10:1 ratio (matrix:polymer). Absorbance at 570 nm was measured in 96 well plates using a TECAN Spark 10M microplate reader. Flow cytometry measurements were performed using a BD Accuri C6 Plus.
Experimental, according to certain embodiments disclosed herein:
Synthesis of (Z)-6,6′-((4,4′-(but-2-ene-1,4-diylbis(oxy))bis(benzoyl))bis(azanediyl))dihexanoic acid (II): To a solution of (I) (182.4 mg, 1.0 equiv.) in 10 mL DMF, HATU (472 mg, 2.2 equiv.) and DIPEA (450 μL, 4.6 equiv.) were added. The mixture was stirred at room temperature for 30 minutes. To the mixture 6-Aminocaproic acid methyl ester hydrochloride (237 mg, 2.3 equiv.) and DIPEA (240 μL, 2.5 equiv.) were added. The reaction was stirred for another 48 hours and then concentrated to dryness. The residue was resuspended in CH2Cl2 and washed by water (×1) and HCl (aq) (1M) (×3). The organic layer was collected and dried by Na2SO4, filtered and concentrated. The obtained solid was then purified by flash chromatography (4:1 Ethyl Acetate:Petroleum Ether) to give dimethyl 6,6′-((4,4′-(but-2-ene-1,4-diylbis(oxy))bis(benzoyl))bis(azanediyl))(Z)-dihexanoate as a white solid.
To a container charged with dimethyl 6,6′-((4,4′-(but-2-ene-1,4-diylbis(oxy))bis(benzoyl))bis(azanediyl))(Z)-dihexanoate (100.6 mg, 1 equiv.) was added 4:1 MeOH:H2O (100 mL) containing LiOH (85.4 mg, 20.6 equiv.). The mixture was stirred at 35° C. for 6 h and then MeOH was removed by rotary evaporation until a white precipitate formed. The mixture was diluted by water and acidified with HCl (conc.). The resulting white solid was collected by vacuum filtration, washed with water and dried under vacuum.
Synthesis of PTX-containing chain transfer agent (III): To a solution of (3) (60.1 mg, 1 equiv.), paclitaxel (260.2 mg, 3 equiv.) and DMAP (2.65 mg, 0.2 equiv.) in 4:1 DCM:DMF (10 mL) in a 0° C. ice bath was added DCC (53.8 mg, 2.4 equiv.) slowly. The reaction was stirred for 30 minutes and then the ice bath was removed and the reaction was stirred for another 8 h. The mixture was filtered and washed with water (×1) and HCl (aq) (1M) (×2), then dried (Na2SO4), filtered and concentrated to dryness. The white crude material was purified by flash chromatography (3:1 Ethyl Acetate:Petroleum Ether to 100% Ethyl Acetate).
Synthesis of peptide monomers: Peptide monomers were synthesized via standard FMOC-based solid phase peptide synthesis using Rink Amide MBHA resin. FMOC was deprotected using a solution of 20% piperidine in DMF. Amino acid couplings were carried out using HBTU and DIPEA (resin/amino acid/HBTU/DIPEA 1:3:2.95:6) for 45 mins. Norbornenyl-glycine (1.2 equiv.) coupling was carried out using HATU (1.15 equiv.) and DIPEA (2.4 equiv.) for 6 hrs. The final peptide monomers were cleaved from the resin using a mixture of TFA/H2O/TIPS (95:2.5:2.5) for 2 hrs and precipitated from cold ether. The crude products were further purified by semi-prep HPLC using UV-Vis detector at 214 nm.
Synthesis of polymers: To stirred solutions of peptide monomers (10 equiv., 0.03 mmol/L) in DMF-d7 (0.5 mL) were added modified 2rd Generation Grubbs initiator (1 equiv.) in a small volume of DMF-d7. The polymerizations were stirred for 4 to 5 h, after which a solution of the dye monomer (0.2 equiv.) in a small volume DMF-d7 was added to the reactions and left to stir for 1 hour. To each reaction PTX-containing chain transfer agent (4) in a small volume of dry DMF (2 equiv.) was added. After 12 h, ethyl vinyl ether was added to ensure full termination. The polymers were precipitated into a cold 1:2 dichloromethane:ether solution (×3) and then purified by RP-HPLC with the UV-Vis detector monitoring at 214 nm. Each peak obtained from HPLC was characterized by MALDI-TOF-MS.
Cytotoxicity Assay: The cytotoxicity of all polymers was assessed using the MTT metabolic assay. A549 cells were plated at a density of 2,000 cells/well in a 96-well plate 18 hrs prior to treatment. Materials at 10× the desired concentration (with respect to polymer) were diluted with PBS, added to the appropriate wells, and the plates incubated for 4 hrs at 37° C. Following incubation, the materials were removed, cells were washed twice with PBS, supplemented with 100 μL Ham's F-12K media, and incubated for an additional 48 or 72 hrs.
De Geest and coworkers developed a paclitaxel-containing chain transfer agent for reversible addition-fragmentation polymerization to prepare well-defined terminal drug-labeled polymers. The resulting polymers contained one drug per modified polymer chain end; although it must be noted that not all chain ends contained a drug moiety because of inherent features of the RAFT mechanism including the use of initiators. These polymers also formed micellar structures with the drug in the core of the micelles.
To the best of our knowledge no other groups are working on chain terminating agents for functionalizing ROMP polymers of peptides.
The invention can be further understood by the following non-limiting examples.
Included in this section are certain embodiments of polymers and methods disclosed herein, including preparation of paclitaxel-terminated peptide brush polymers wherein cell uptake and toxicity are tunable based on peptide sequence. Synthesis was enabled using a new paclitaxel-containing chain termination agent for ring-opening metathesis polymerization (ROMP). Importantly, reverse phase HPLC could be used to efficiently separate peptide brush polymers consisting of one fluorophore and one terminal paclitaxel from crude polymer mixtures. These purified terminally-modified polymers showed greater potency than the original mixtures. Drug-terminated peptide brush polymers carrying positive charges exhibited enhanced cell uptake and cytotoxicity as compared to their neutral and negatively charged analogues.
The loading of therapeutics to and within carriers is achieved by either physical encapsulation or covalent conjugation.1-4 The latter generally involves attaching drugs via chemical bonds, such as esters and disulfides, that facilitate release.5,6 Covalent conjugation has received increasing interest because it confers the drug delivery system with enhanced stability during blood circulation. This approach not only precludes premature release of therapeutics, but also allows for specific stimuli-triggered drug release in diseased tissues.7-9 In the case of polymeric carriers, drugs are typically tethered as side chains via direct polymerization of drug-modified monomers or via post-polymerization modifications.2 In each case, a statistical average of drugs is incorporated per polymer chain because of the inherent dispersity of the polymer. To overcome this issue and to prepare polymer-based drug delivery systems in a more precise and well-defined fashion, new approaches are needed.10
Recently, De Geest and coworkers developed a paclitaxel-containing chain transfer agent for reversible addition-fragmentation polymerization to prepare well-defined terminal drug-labeled polymers. The resulting polymers contained one drug per modified polymer chain end; although it must be noted that not all chain ends contained a drug moiety because of inherent features of the RAFT mechanism including the use of initiators.11-13 The resulting polymers spontaneously assembled, with the hydrophobic drug at the core, anchoring the amphiphilic molecules as micelles.14-17
Contemplated herein are water soluble peptide-based polymers that are resistant to proteolysis and capable of cell internalization.18-22 These polymers can be tuned in terms of aggregated state and overall charge. Indeed, when dispersed as individual chains, we have shown that the polymers avoid macrophage uptake,18 a drawback inherent to nanoparticle formulations.23 Inspired by the concept of the chain end-modified polymers by De Geest and our observations regarding the benefits of single-chain polymers,18 here we designed a polymer-drug conjugate with one drug residing on a water-soluble polymer chain end and an easily adjustable overall charge. The goal was to incorporate a drug to water soluble polymers via ring-opening metathesis polymerization (ROMP),5,24 where only a single drug per polymer chain was introduced. As such, the design employed herein avoids drug-containing norbornene monomers. We designed and synthesized a new paclitaxel-containing chain termination agent for ROMP (
Paclitaxel serves as a potent anticancer agent used in the treatment of many solid tumors. However, its poor solubility in aqueous solution poses a long-lasting challenge in clinical applications.16,25 In view of this, chemical modifications of paclitaxel involving the attachment of hydrophilic moieties to the drug have been extensively investigated. Specifically, the relatively high reactivity of the 2′-hydroxyl group in paclitaxel allows for selective conjugation with carboxylic functionalities through formation of an ester bond,26 which is cleavable in the presence of esterases or acidic environment facilitating drug release. In our design, a chain termination agent that contains two carboxylic acids was conjugated to paclitaxel through the 2′-hydroxyl, generating a new chain termination agent consisting of two drugs. This agent can be used to terminate ROMP and attach the drug covalently to the polynorbornene chain end. It is worth noting that a linker based on six methylene carbons was added between the termination agent and drug to overcome steric hinderance and increase the overall synthetic efficiency (
An important property governing the efficacy of nanomedicines is their ability to enter cells, which governs their bioactivity towards cell organelles.18,19,27,28 Since the cell membrane is negatively charged, we contemplated that positively charged peptide brush polymers would possess a higher performance in cell penetration than their neutral and negatively charged analogues. To verify this, a series of peptides bearing different charges and number of charges were synthesized, including GGSGSGS (SEQ ID NO:1), GGSGSGE (SEQ ID NO:2), GGSGSGK (SEQ ID NO:3), GGSGSGR (SEQ ID NO:4), GGSGSGRR (SEQ ID NO:5). These amino acid sequences were anchored with a carboxylic acid-functionalized norbornenes through solid phase peptide synthesis (
ROMP of peptide monomers was conducted in the presence of a modified 2nd generation Grubbs catalyst (
We contemplated that successfully drug end-capped peptide brush polymers would be more hydrophobic than polymers without drug. Similarly, Du Prez et al. demonstrated the utilization of HPLC in separating polymers of different hydrophobicity.29 The neutral version of drug end-capped peptide brush polymers consisting of amino acid sequence GGSGSGS (denoted as poly(GGSGSGS)) was assessed by HPLC (
aMn = ΣNiMi/ΣNi
bMw = ΣNiMi2/ΣNiMi
cThe Mn (peak 3) of each polymer was determined by the average molecular weight and portion of each part.
To evaluate the in vitro bioactivity of peptide brush polymer-drug conjugates carrying different charges, we performed a flow cytometry assay to quantify cellular uptake efficiency (
The stability of drug delivery systems serves as a basis for enhancing half-life of therapeutic cargos during the course of delivery to targeted areas. To evaluate the stability of peptide brush polymers, positively charged poly(GGSGSGK) and its single peptide analogue GGSGSGK were treated with pronase, a robust proteolytic enzyme isolated from the extracellular fluid of Streptomyces griseus. RP-HPLC and MALDI-TOF mass spectroscopy were used to quantify the cleavage of peptides (
In summary of the embodiments discussed above, we have developed a new approach to generate well-defined drug-terminated peptide brush polymers via ROMP. This was enabled by employing a paclitaxel-modified chain terminating agent which could subsequently act as a tag to enable facile separations by reverse phase HPLC. We note that at least 50% of polymer chain ends were conjugated with the drug. This less than stoichiometric yield is likely due to the livingness of ROMP under the investigated conditions. In this study, a simple and non-functional core amino acid sequence GGSGSG was used as a proof-of-concept peptide building block from which charge could be varied. We contemplate that this approach allows for the incorporation of a wide variety of functional peptides, including tumor-targeting and therapeutic peptides, enabling synergistic therapy with the terminal drug. In addition, we demonstrated that HPLC could be used to efficiently purify terminally-labeled polymers away from mixtures and unmodified polymers, yielding the appropriate control polymers and increasing the efficiency of the drug carrier with respect to paclitaxel.
Included in this section are certain embodiments of polymers and methods disclosed herein.
1. General Methods: All reagents were purchased from commercial sources and used without further purification. A549 lung carcinoma cells were obtained from subcultures of cells from ATCC. Sealed ampules of DMF-d7 (Sigma-Aldrich) were degassed before use. Norbornenyl-glycine was prepared as described1. Modified 2nd Generation Grubbs Ruthenium initiator (IMesH2)(C5H5N)2(Cl)2Ru═CHPh was prepared as described2. Polymerizations were performed in a glove box. Peptide monomers were synthesized on a Biotage Alstra peptide synthesizer. Analytical RP-HPLC analysis was performed on a Waters Symmetry column (150×4.60 mm) using a Waters 1525 Binary HPLC pump equipped with Waters 2998 Photodiode Array Detector. Peptide monomers were purified on a Semi-Prep RP-HPLC using a Waters SunFire column (250×19 mm). The solvent system for both HPLC instruments consists of 0.1% TFA in water (buffer A) and 0.1% TFA in acetonitrile (buffer B). 1H and 13C NMR spectra were recorded on a Bruker 400 MHz NMR spectrometer. Chemical shifts were reported in ppm relative to the residual solvent peak or TMS peak. ESI-MS spectra were performed on a LCQ-Advantage mass spectrometer. MALDI-TOF-MS spectra were performed on a Bruker Ultraflextreme mass spectrometer. MALDI-TOF-MS spectra of polymers were performed using a matrix solution of 2,5-dihydroxybenzoic acid in 1:3 water:acetonitrile with 0.1% TFA (30 mg/ml), and polymer solutions in water (1 mg/ml). The solutions were mixed in a 10:1 ratio (matrix:polymer). DLS measurements were performed on a Wyatt DynaPro NanoStar. Absorbance at 570 nm was measured in 96 well plates using a TECAN Spark 10M microplate reader. Flow cytometry measurements were performed using a BD Accuri C6 Plus. Confocal images were taken on a Nikon TI-E+A1 microscope (Nikon, Japan).
2. Experimental:
2.1. Synthesis of PTX-Containing Chain Transfer Agent:
(I). Synthesis of dimethyl 6,6′-((4,4′-(but-2-ene-1,4-diylbis(oxy))bis(benzoyl))bis(azanediyl))(Z)-dihexanoate (2) (Z)-4,4′-(but-2-ene-1,4-diylbis(oxy))dibenzoic acid (1) was prepared as previously described.3 To a solution of (1) (182.4 mg, 1.0 equiv.) in 10 mL DMF, HATU (472 mg, 2.2 equiv.) and DIPEA (450 μL, 4.6 equiv.) were added. The mixture was stirred at room temperature for 30 minutes. To the mixture 6-Aminocaproic acid methyl ester hydrochloride (237 mg, 2.3 equiv.) and DIPEA (240 μL, 2.5 equiv.) were added. The reaction was stirred for another 48 hours and then concentrated to dryness. The residue was resuspended in CH2Cl2 and washed by water (×1) and HCl (aq) (1M) (×3). The organic layer was collected and dried by Na2SO4, filtered and concentrated. The obtained solid was then purified by flash chromatography (4:1 Ethyl Acetate:Petroleum Ether) to give the product as a white solid. 1H NMR (400 MHz, CDCl3): δ (ppm) 1.39 (m, 4H, 2×CH2), 1.63 (m, 8H, 4×CH2), 2.31 (t, 4H, 2×CH2), 3.41 (t, 4H, 2×CH2), 3.65 (s, 6H, 2×CH3), 4.70 (d, 4H, 2×CH2), 5.92 (t, 2H, 2×CH), 6.88 (d, 4H, 4×Ar), 7.73 (d, 4H, 4×Ar). 13C NMR (101 MHz, CDCl3): 24.45, 26.41, 29.29, 33.85, 39.59, 51.50, 64.35, 114.39, 127.45, 128.37, 128.77, 160.74, 167.03, 174.09. ESI-MS (+): m/z 605.28 [M+Na]+.
(II). Synthesis of (Z)-6,6′-((4,4′-(but-2-ene-1,4-diylbis(oxy))bis(benzoyl))bis(azanediyl))dihexanoic acid (3): To a container charged with (2) (100.6 mg, 1 equiv.) was added 4:1 MeOH:H2O (100 mL) containing LiOH (85.4 mg, 20.6 equiv.). The mixture was stirred at 35° C. for 6 h and then MeOH was removed by rotary evaporation until a white precipitate formed. The mixture was diluted by water and acidified with HCl (conc.). The resulting white solid was collected by vacuum filtration, washed with water and dried under vacuum. 1H NMR (400 MHz, MeOD): δ (ppm) 1.42 (m, 4H, 2×CH2), 1.64 (m, 8H, 4×CH2), 2.31 (t, 4H, 2×CH2), 3.36 (m, 4H, 2×CH2), 4.78 (d, 4H, 2×CH2), 5.92 (t, 2H, 2×CH), 6.99 (d, 4H, 4×Ar), 7.78 (d, 4H, 4×Ar). 13C NMR (101 MHz, MeOD): 25.79, 27.60, 30.26, 34.85, 40.79, 65.49, 115.46, 128.24, 129.52, 130.10, 162.58, 169.82, 177.55. ESI-MS (−): m/z 553.16 [M−H]−.
(III). Synthesis of PTX-containing chain transfer agent (4):
To a solution of (3) (60.1 mg, 1 equiv.), paclitaxel (260.2 mg, 3 equiv.) and DMAP (2.65 mg, 0.2 equiv.) in 4:1 DCM:DMF (10 mL) in a 0° C. ice bath was added DCC (53.8 mg, 2.4 equiv.) slowly. The reaction was stirred for 30 minutes and then the ice bath was removed and the reaction was stirred for another 8 h. The mixture was filtered and washed with water (×1) and HCl (aq) (1M) (×2), then dried (Na2SO4), filtered and concentrated to dryness. The white crude material was purified by flash chromatography (3:1 Ethyl Acetate:Petroleum Ether to 100% Ethyl Acetate). 1H NMR (500 MHz, CDCl3): δ (ppm) 1.12 (s, 6H, 2×CH3), 1.19 (s, 6H, 2×CH3), 1.37 (m, 4H, 2×CH2), 1.56-1.67 (m, 14H, 4×CH2, 2×CH3), 1.78 (s, 2H, 2×OH), 1.87 (m, 2H, CH2), 1.92 (s, 6H, 2×CH3), 2.07-2.12 (dd, 2H, CH2), 2.21 (s, 6H, 2×CH3), 2.29-2.34 (dd, 2H, CH2), 2.42 (m, 10H, 2×CH3, 2×CH2), 2.54 (m, 4H, CH2, 2×OH), 3.29-3.41 (m, 4H, 2×CH2), 3.80 (d, 2H, 2×CH), 4.18-4.31 (dd, 4H, 2×CH2), 4.44 (t, 2H, 2×CH), 4.69 (d, 4H, 2×CH2), 4.96 (d, 2H, 2×CH), 5.50 (d, 2H, 2×CH), 5.67 (d, 2H, 2×CH), 5.91 (t, 2H, 2×CH), 5.94-5.97 (dd, 2H, 2×CH), 6.16-6.21 (m, 4H, 4×CH), 6.29 (s, 2H, 2×NH), 6.89 (d, 4H, 4×Ar), 7.15 (t, 2H, 2×NH), 7.32 (m, 2H, 2×Ar), 7.36 (t, 4H, 4×Ar), 7.40 (d, 8H, 8×Ar), 7.46 (t, 2H, 2×Ar), 7.51 (t, 4H, 4×Ar), 7.61 (t, 2H, 2×Ar), 7.67 (d, 4H, 4×Ar), 7.74 (d, 4H, 4×Ar), 8.12 (d, 4H, 4×Ar). 13C NMR (101 MHz, CDCl3): 9.73, 14.92, 21.15, 22.19, 22.77, 24.37, 26.11, 26.85, 29.23, 29.80, 33.70, 35.68, 39.69, 43.27, 45.73, 53.18, 58.56, 64.45, 71.88, 72.17, 74.16, 75.21, 75.72, 76.53, 79.09, 81.13, 84.56, 114.56, 126.89, 127.26, 127.40, 128.26, 128.62, 128.74, 128.81, 128.85, 129.14, 129.38, 130.30, 132.04, 132.89, 133.77, 133.82, 137.08, 142.78, 160.92, 167.02, 167.22, 167.45, 168.46, 169.93, 171.29, 172.83, 203.92. MALDI-TOF-MS (+): m/z 2249.08 [M+Na]+.
2.2. Synthesis of Dye Monomer:
(I) Synthesis of 6-hydroxyhexyl bicyclo[2.2.1]hept-5-ene-2-carboxylate (5): To a solution of 5-Norbornene-2-carboxylic acid (102.1 mg, 1 equiv.), hexane-1,6-diol (360.3 mg, 4.1 equiv.) and DMAP (9.0 mg, 0.1 equiv.) in 1 mL DCM, was slowly added a solution of DCC (198.2 mg, 1.3 equiv.) in 1 mL DCM at 0° C. in an ice bath. The reaction was stirred for 30 minutes and then ice bath was removed and the reaction left to stir for another 6 h. The mixture was filtered, washed with HCl (aq) (1M) (×3), then dried (Na2SO4), filtered and concentrated. The crude material was further purified by flash column (4:1 Petroleum Ether:Ethyl Acetate). 1H NMR (400 MHz, CDCl3): δ (ppm) 1.34-1.42 (m, 5H, 2×CH2, CH2), 1.52 (dd, 1H, CH2), 1.58 (m, 2H, 1×CH2), 1.66 (m, 2H, 1×CH2), 1.89-1.94 (m, 2H, 1×CH2), 2.20-2.24 (m, 1H, 1×CH), 2.92 (s, 1H, 1×CH), 3.03 (s, 1H, 1×CH), 3.63 (t, 2H, 1×CH2), 4.09 (t, 2H, 1×CH2), 6.10-6.15 (m, 2H, 2×CH). 13C NMR (101 MHz, CDCl3): 25.47, 25.82, 28.75, 30.39, 32.65, 41.70, 43.29, 46.42, 46.68, 62.75, 64.49, 135.82, 138.09, 176.46. ESI-MS (+): m/z 261.06 [M+Na]+.
(II) Synthesis of dye monomer (6): To a solution of (5) (50.2 mg, 1 equiv.), rhodamine B (121.6 mg, 1.2 equiv.) and DMAP (2.6 mg, 0.1 equiv.) in 1 mL of DCM, was added slowly a solution of DCC (56.8 mg, 1.3 equiv.) in 0.5 mL of DCM at 0° C. in an ice bath. The reaction was stirred for 30 minutes and then ice bath was removed, and the reaction left to stir for another 6 hrs. The mixture was filtered and further purified by flash chromatography (40:1 CH2Cl2:MeOH to 20:1 CH2Cl2:MeOH) and Semi-Prep RP-HPLC (65-90% buffer B). 1H NMR (400 MHz, CDCl3): δ (ppm) 1.19-1.33 (m, 17H, 2×CH2, 4×CH3, CH2), 1.44-1.57 (m, 6H, 2×CH2, CH, CH), 1.88 (m, 1H, CH2), 2.18 (m, 1H, 1×CH), 2.90 (s, 1H, 1×CH), 2.99 (s, 1H, 1×CH), 3.60 (q, 8H, 4×CH2), 4.02 (s, 4H, 2×CH2), 6.10 (d, 2H, 2×CH), 6.81 (s, 4H, Ar), 7.06 (d, 2H, Ar), 7.30 (d, 1H, Ar), 7.72-7.81 (m, 2H, Ar), 8.28 (d, 1H, Ar). 13C NMR (101 MHz, CDCl3): 12.32, 25.26, 28.03, 28.30, 30.13, 41.42, 42.99, 45.83, 46.14, 46.42, 63.99, 65.37, 96.20, 113.37, 113.81, 117.26, 129.90, 130.04, 130.20, 131.09, 132.80, 133.25, 135.49, 137.88, 155.36, 157.61, 158.91, 159.68, 160.06, 164.95, 176.11. ESI-MS (+): m/z 663.29 [M+H]+.
2.3. Synthesis of Peptide Monomers:
Peptide monomers were synthesized via standard FMOC-based solid phase peptide synthesis using Rink Amide MBHA resin. FMOC was deprotected using a solution of 20% piperidine in DMF. Amino acid couplings were carried out using HBTU and DIPEA (resin/amino acid/HBTU/DIPEA 1:3:2.95:6) for 45 mins. Norbornenyl-glycine (1.2 equiv.) coupling was carried out using HATU (1.15 equiv.) and DIPEA (2.4 equiv.) for 6 hrs. The final peptide monomers were cleaved from the resin using a mixture of TFA/H2O/TIPS (95:2.5:2.5) for 2 hrs and precipitated from cold ether. The crude products were further purified by semi-prep HPLC using UV-Vis detector at 214 nm.
2.4. Synthesis of Polymers:
To stirred solutions of peptide monomers (10 equiv., 0.03 mmol/L) in DMF-d7 (0.5 mL) were added modified 2rd Generation Grubbs initiator (1 equiv.) in a small volume of DMF-d7. The polymerizations were stirred for 4 to 5 h, after which a solution of the dye monomer (0.2 equiv.) in a small volume DMF-d7 was added to the reactions and left to stir for 1 hour. To each reaction PTX-containing chain transfer agent (4) in a small volume of dry DMF (2 equiv.) was added. After 12 h, ethyl vinyl ether was added to ensure full termination. The polymers were precipitated into a cold 1:2 dichloromethane:ether solution (×3) and then purified by RP-HPLC with the UV-Vis detector monitoring at 214 nm. Each peak obtained from HPLC was characterized by MALDI-TOF-MS.
2.5. In Vitro Analyses:
2.5.1. Cell Culture:
A549 lung carcinoma cells were cultured in Ham's F-12k medium, supplemented with 10% fetal bovine serum and 1% antibiotics, and maintained at 37° C. in 5% CO2.
2.5.2. Cellular Uptake Studies:
By flow cytometry: Cells were plated at a density of 100,000 cells per well in a 24-well plate 16 hrs before treatment. Polymeric materials at 10× the desired concentration (with respect to polymer) were diluted with PBS, added to the appropriate wells, and the plates incubated for 4 hrs at 37° C. The media was then removed and the cells washed twice with PBS. Cells that were incubated with polymers bearing positive charge (poly(GGSGSGK)-Dye-PTX/poly(GGSGSGR)-Dye-PTX/poly(GGSGSGRR)-Dye-PTX) were then incubated with heparin (0.5 mg/mL−1 in PBS) for five minutes (×3) and rinsed twice with PBS to remove any un-internalized polymer adhered to the cell surface. The cells were subsequently dissociated from the culture plate by treatment with trypsin for 5 minutes, followed by media addition and PBS. The cells were transferred to centrifuge tubes and centrifuged at 1000 rpm to form a cell pellet. The supernatant was discarded, cells resuspended in PBS, and centrifuged again. The final obtained cell pellets were resuspended in a small volume of PBS containing 1% FBS and analyzed by flow cytometry (10,000 gated events on three separate cultures per condition).
By confocal microscopy: Cells were plated at a density of 50,000 cells in glass bottom plates and incubated for 18 hrs before treatment. 4 μM Poly(GGSGSGRR)-Dye-PTX and poly(GGSGSGS)-Dye-PTX were added to each plate, followed by incubation for 4 hrs. After that, the media was removed and the cells were washed twice with PBS. Cells treated with poly(GGSGSGRR)-Dye-PTX were incubated with heparin (0.5 mg/mL-1 in PBS) for five minutes (×3) and rinsed twice with PBS. Diluted hoechest 33342 staining solution for live cells was then add to the wells for 10 minutes. The cells were gently washed with PBS for three times and 4% paraformaldehyde was added to fix the cells. After 10 minutes, the fixation solution was removed and cells washed three times with PBS.
2.5.3. Cytotoxicity Assays:
The cytotoxicity of all polymers was assessed using the MTT metabolic assay. A549 cells were plated at a density of 2,000 cells/well in a 96-well plate 18 hrs prior to treatment. Materials at 10× the desired concentration (with respect to polymer) were diluted with PBS, added to the appropriate wells, and the plates incubated for 4 hrs at 37° C. Following incubation, the materials were removed, cells were washed twice with PBS, supplemented with 100 μL Ham's F-12K media, and incubated for an additional 48 or 72 hrs.
2.5.4 Proteolytic Degradation Assays:
Monomer Nor-GGSGSGK and polymer Poly(GGSGSGK) (50 μM, with respect to peptide concentration) were treated with pronase (0.35 U/mL) in DPBS at 37° C. After treatment, the enzyme was heat denatured at 65° C. for 15 min.
All references cited throughout this application, for example patent documents including issued or granted patents or equivalents; patent application publications; and non-patent literature documents or other source material; are hereby incorporated by reference herein in their entireties, as though individually incorporated by reference, to the extent each reference is at least partially not inconsistent with the disclosure in this application (for example, a reference that is partially inconsistent is incorporated by reference except for the partially inconsistent portion of the reference).
The terms and expressions which have been employed herein are used as terms of description and not of limitation, and there is no intention in the use of such terms and expressions of excluding any equivalents of the features shown and described or portions thereof, but it is recognized that various modifications are possible within the scope of the invention claimed. Thus, it should be understood that although the present invention has been specifically disclosed by preferred embodiments, exemplary embodiments and optional features, modification and variation of the concepts herein disclosed may be resorted to by those skilled in the art, and that such modifications and variations are considered to be within the scope of this invention as defined by the appended claims. The specific embodiments provided herein are examples of useful embodiments of the present invention and it will be apparent to one skilled in the art that the present invention may be carried out using a large number of variations of the devices, device components, methods steps set forth in the present description. As will be obvious to one of skill in the art, methods and devices useful for the present methods can include a large number of optional composition and processing elements and steps.
When a group of substituents is disclosed herein, it is understood that all individual members of that group and all subgroups are disclosed separately. When a Markush group or other grouping is used herein, all individual members of the group and all combinations and subcombinations possible of the group are intended to be individually included in the disclosure. Additionally, unless otherwise specified, all isotopic variants of compounds disclosed herein are intended to be encompassed by the disclosure. For example, it will be understood that any one or more hydrogens in a molecule disclosed can be replaced with deuterium or tritium. Isotopic variants of a molecule are generally useful as standards in assays for the molecule and in chemical and biological research related to the molecule or its use. Methods for making such isotopic variants are known in the art. Specific names of compounds are intended to be exemplary, as it is known that one of ordinary skill in the art can name the same compounds differently.
It must be noted that as used herein and in the appended claims, the singular forms “a”, “an”, and “the” include plural reference unless the context clearly dictates otherwise. Thus, for example, reference to “a cell” includes a plurality of such cells and equivalents thereof known to those skilled in the art, and so forth. As well, the terms “a” (or “an”), “one or more” and “at least one” can be used interchangeably herein. It is also to be noted that the terms “comprising”, “including”, and “having” can be used interchangeably. The expression “of any of claims XX-YY” (wherein XX and YY refer to claim numbers) is intended to provide a multiple dependent claim in the alternative form, and in some embodiments is interchangeable with the expression “as in any one of claims XX-YY.”
Unless defined otherwise, all technical and scientific terms used herein have the same meanings as commonly understood by one of ordinary skill in the art to which this invention belongs. Although any methods and materials similar or equivalent to those described herein can be used in the practice or testing of the present invention, the preferred methods and materials are now described. Nothing herein is to be construed as an admission that the invention is not entitled to antedate such disclosure by virtue of prior invention.
Whenever a range is given in the specification, for example, a temperature range, a time range, or a composition or concentration range, all intermediate ranges and subranges, as well as all individual values included in the ranges given are intended to be included in the disclosure. As used herein, ranges specifically include the values provided as endpoint values of the range. For example, a range of 1 to 100 specifically includes the end point values of 1 and 100. It will be understood that any subranges or individual values in a range or subrange that are included in the description herein can be excluded from the claims herein.
As used herein, “comprising” is synonymous with “including,” “containing,” or “characterized by,” and is inclusive or open-ended and does not exclude additional, unrecited elements or method steps. As used herein, “consisting of” excludes any element, step, or ingredient not specified in the claim element. As used herein, “consisting essentially of” does not exclude materials or steps that do not materially affect the basic and novel characteristics of the claim. In each instance herein any of the terms “comprising”, “consisting essentially of” and “consisting of” may be replaced with either of the other two terms.
One of ordinary skill in the art will appreciate that starting materials, biological materials, reagents, synthetic methods, purification methods, analytical methods, assay methods, and biological methods other than those specifically exemplified can be employed in the practice of the invention without resort to undue experimentation. All art-known functional equivalents, of any such materials and methods are intended to be included in this invention. The terms and expressions which have been employed are used as terms of description and not of limitation, and there is no intention that in the use of such terms and expressions of excluding any equivalents of the features shown and described or portions thereof, but it is recognized that various modifications are possible within the scope of the invention claimed. Thus, it should be understood that although the present invention has been specifically disclosed by preferred embodiments and optional features, modification and variation of the concepts herein disclosed may be resorted to by those skilled in the art, and that such modifications and variations are considered to be within the scope of this invention as defined by the appended claims.
All references, including publications, patent applications, and patents, cited herein are hereby incorporated by reference to the same extent as if each reference were individually and specifically indicated to be incorporated by reference and were set forth in its entirety herein.
The use of the terms “a” and “an” and “the” and “at least one” and similar referents in the context of describing the invention (especially in the context of the following claims) are to be construed to cover both the singular and the plural, unless otherwise indicated herein or clearly contradicted by context. The use of the term “at least one” followed by a list of one or more items (for example, “at least one of A and B”) is to be construed to mean one item selected from the listed items (A or B) or any combination of two or more of the listed items (A and B), unless otherwise indicated herein or clearly contradicted by context. The terms “comprising,” “having,” “including,” and “containing” are to be construed as open-ended terms (i.e., meaning “including, but not limited to,”) unless otherwise noted. Recitation of ranges of values herein are merely intended to serve as a shorthand method of referring individually to each separate value falling within the range, unless otherwise indicated herein, and each separate value is incorporated into the specification as if it were individually recited herein. All methods described herein can be performed in any suitable order unless otherwise indicated herein or otherwise clearly contradicted by context. The use of any and all examples, or exemplary language (e.g., “such as”) provided herein, is intended merely to better illuminate the invention and does not pose a limitation on the scope of the invention unless otherwise claimed. No language in the specification should be construed as indicating any non-claimed element as essential to the practice of the invention.
The term “and/or” is used herein, in the description and in the claims, to refer to a single element alone or any combination of elements from the list in which the term and/or appears. In other words, a listing of two or more elements having the term “and/or” is intended to cover embodiments having any of the individual elements alone or having any combination of the listed elements. For example, the phrase “element A and/or element B” is intended to cover embodiments having element A alone, having element B alone, or having both elements A and B taken together. For example, the phrase “element A, element B, and/or element C” is intended to cover embodiments having element A alone, having element B alone, having element C alone, having elements A and B taken together, having elements A and C taken together, having elements B and C taken together, or having elements A, B, and C taken together.
Preferred embodiments of this invention are described herein, including the best mode known to the inventors for carrying out the invention. Variations of those preferred embodiments may become apparent to those of ordinary skill in the art upon reading the foregoing description. The inventors expect skilled artisans to employ such variations as appropriate, and the inventors intend for the invention to be practiced otherwise than as specifically described herein. Accordingly, this invention includes all modifications and equivalents of the subject matter recited in the claims appended hereto as permitted by applicable law. Moreover, any combination of the above-described elements in all possible variations thereof is encompassed by the invention unless otherwise indicated herein or otherwise clearly contradicted by context.
This application claims the benefit of priority to U.S. Provisional Patent Application No. 63/018,991, filed May 1, 2020, which is hereby incorporated by reference in its entirety, and this application also incorporates by reference in its entirety, to the extent not inconsistent herewith, each of the following applications: U.S. Non-Provisional application Ser. No. 15/502,166 filed Aug. 10, 2015, and U.S. Non-Provisional application Ser. No. 15/329,526 filed Jul. 28, 2015.
| Filing Document | Filing Date | Country | Kind |
|---|---|---|---|
| PCT/US21/29829 | 4/29/2021 | WO |
| Number | Date | Country | |
|---|---|---|---|
| 63018991 | May 2020 | US |
