Patent Application
20120095188
The present invention relates to a reprogramming transcription factor recombinant protein in which a macromolecule transduction domain (MTD) is fused to a reprogramming transcription factor to obtain cell permeability. The present invention also relates to a polynucleotide which encodes said cell-permeable reprogramming transcription factor recombinant protein and an expression vector for said cell-permeable reprogramming transcription factor recombinant protein. Said cell-permeable reprogramming transcription factor recombinant protein can effectively increase the ability of reprogramming in a somatic cell, and thus can be useful in the establishment of an induced pluripotent stem cell (iPS cell).
Embryonic stem (ES) cells are “pluripotent stem cells” derived from the inner cell mass (ICM) of blastocyst stage embryos. They can differentiate into three primary germ layers, i.e., endoderm, mesoderm, and ectoderm, which develop into the human body. The endoderm gives rise to cells of the thyroid gland, cells of the lung, and pancreatic cells; the mesoderm develops into cardiac muscle cells, muscle cells, kidney cells, and blood cells; and the ectoderm gives rise to not only skin cells, nervous cells, and pigment cells but also reproductive cells, i.e., ovum and sperm. Since embryonic stem cells can differentiate into such various types of cells, they are expected to play an important role as a tool for treating incurable diseases.
Embryonic stem cells can be established by using cells from frozen human embryos or by a somatic cell nuclear transfer technique in which the nucleus of a somatic cell is transferred to a denucleated egg cell. However, these two methods have ethical issues in that cells derived from human embryos are used and a large number of human eggs are required. In addition, low efficiency of the nuclear transfer and potential risk of fatal genetic defects caused by cloning are also problematic.
Another method of establishing embryonic stem cells that avoids the use of human embryos and eggs is to reprogram human somatic cells with reprogramming transcription factors. In this regard, it was reported that 24 candidate genes which were involved in the maintenance of embryonic stem cells were selected, and among them, four genes (Oct4, Sox2, c-Myc, and Klf4) were found to induce reprogramming of cells when transferred into the cell via viral vectors (Yamanaka, Cell 126: 633-678, 2006). It was shown that these four retrovirally-delivered factors were expressed in mouse fibroblast cells and induced reprogramming of the somatic cells to generate induced pluripotent stem cells. In addition, another study showed that human somatic cells were successfully reprogrammed by delivering Oct4 and Sox2 from the four reprogramming transcription factors in combination with new factors, i.e., Lin28 and Nanog (Yu J, Science 318(5858): 1917-20, 2007). Thus, it can be appreciated that among the six transcription factors experimented above (Oct4, Sox2, c-Myc, Klf4, Nanog, and Lin28), Oct4 and Sox2 are indispensible for induction of reprogramming, while c-Myc, Klf4, Nanog, and Lin28 can be optionally used with the two primary transcription factors in various combinations and play an important role in the establishment of pluripotent stem cells and the reprogramming process. In addition, the aforementioned genes are essential for pluripotency and self-renewal, and the maintenance of undifferentiation in embryonic stem cells. Transcription factors expressed from these genes function to activate one another and induce differentiation while suppressing inhibitory genes for self-renewal.
Oct-4, also known as POU domain class V, is an octamer transcription factor belonging to the POU family. This protein is known to be expressed specifically in undifferentiated cells such as embryonic stem cells and embryonic tumor cells. Further, it plays a critical role in the maintenance of pluripotency of the stem cells. If the level of Oct-4 expression is within a normal range, the self-renewal and pluripotency of stem cells are maintained. However, an expression level of Oct-4 higher than the normal range causes the stem cells to differentiate into primitive endoderm and primitive mesoderm. On the contrary, a low expression level of Oct-4 leads the stem cells to develop into trophectoderm. Thus, Oct-4 is vital for regulating pluripotency of embryonic stem cells and cell differentiation. Oct-4 was also reported to interact with Sox2 to synergically increase expression of genes in the lower stream, i.e., Fgf4, Utf-1, Nanog, and Sox2.
The genes of the Sox family relate to unipotent stem cells as well as multipotent stem cells. Among them, Sox2 (SRY-type high mobility group box 2) transcription factor is a member of the Sox family comprising an HMG box DNA binding motif. Sox 2 is the only one, among 20 proteins of the Sox family, that plays an important role in maintaining the pluripotency of embryonic stem cells. Like Oct-4, if the expression of Sox2 is inhibited, differentiation is induced in mouse embryonic stem cells. Further, the Sox2-binding site, which is found in promoter regions of several lower-stream genes of Sox2, is often present adjacent to the Oct-4- or Nanog-binding site. Thus, the interaction between Sox2 and Oct-4 transcription factors enables the reprogrammed stem cells to maintain an undifferentiated state and to show characteristics of embryonic stem cells.
c-Myc, a helix-loop-helix/leucine zipper transcription factor, is an oncogene involved in various intracellular functions such as cell growth, differentiation, proliferation, apoptosis, and transformation into cancerous cells. c-Myc is a lower stream gene in a signal delivery mechanism by LIF(leukaemia inhibitory factor)/STAT3 and Wnt, which is a main mechanism for pluripotency maintenance. c-Myc transcription factor prevents the p21 gene from inhibiting cell proliferation by being activated by the Klf4 gene in the reprogrammed stem cells. In addition, c-Myc changes the structure of chromatin by binding to the Myc recognition site present on the genome and attracting the histone acetylase complex so that Oct-4 and Sox2 can successfully bind to the target genes.
Klf4 is a transcription factor belonging to the Kruppel-like factor (Klf) family. It was used in the production of murine and human reprogrammed stem cells by the Yamanaka group and the Jaenisch group. However, given that the Thomson group reported the establishment of human reprogrammed stem cells without Klf4, this transcription factor may not be essential for the production of human reprogrammed stem cells. Klf4 is characterized by its Kruppel-type zinc-finger and participates in inhibition of growth, thereby regulating a cell cycle. It was reported that Klf4, like c-Myc, is a lower-stream gene of STAT3 in embryonic stem cells, and its overexpression maintains Oct-4 expression, thereby inhibiting differentiation of mouse embryonic stem cells. In addition, Klf4, together with Sox2, is responsible for the regulation of expression of Lefty1, which is known as a lower-stream gene of Oct-4 in embryonic stem cells and inhibits the function of the p53 tumor suppressor gene. Thus, it is thought that Klf4 indirectly enhances the activity of Nanog, which is known as an embryo-specific gene and suppresses apoptosis induced by c-Myc to induce production of reprogrammed stem cells. It has been reported that Klf2, as well as Klf4, can be employed in the production of human reprogrammed stem cells. Further, other relevant genes, i.e., Klf1 and Klf5, can also be used in the production of human reprogrammed stem cells, although they may show lower efficiency than Klf4 or Klf2.
Nanog is an embryo-specific gene which does not act through the LIF/STAT3 mechanism. Like Oct-4 or Sox2, this independent transcription factor is involved in the maintenance of pluripotency of embryonic stem cells and suppresses GATA4 and GATA6 transcription factors responsible for differentiation into endoderm.
Lastly, LIN28, which is an mRNA-binding protein, is expressed in embryonic stem cells and embryonic tumor cells and is known to be involved in differentiation and proliferation. Although Nanog and LIN28 are not indispensible in the production of reprogrammed stem cells, the Thomson group demonstrated the establishment of reprogrammed stem cells using these two genes.
In many studies currently conducted to establish reprogrammed stem cells using the six reprogramming transcription factors, the key issue is in vivo transduction of the transcription factors. Thus, relevant techniques are being intensively studied. Among them, transduction with a virus vector is commonly used to deliver the reprogramming transcription factors. However, the viral vector transduction technique accompanies a side effect of tumor generation. It has been reported that when a retrovirus or lentivirus encoding any of the six reprogramming transcription factors (Oct4, Sox2, c-Myc, Klf4, Nanog, and Lin28) is inserted into a somatic gene, the gene is mutated due to integration of the external genes and the inserted c-Myc oncogene generates teratoma in 25% of the chimera generated from the reprogrammed cells.
Such a method of transducing a reprogramming transcription factor using a virus or plasmid is limited in cellular therapy due to possibilities of mutagenesis and oncogenesis. However, the method of transducing a cell-permeable reprogramming transcription factor using a protein transduction method is a safe method free of insertion of external genes. Accordingly, the inventors of the present invention aimed at producing a cell permeable reprogramming transcription factor (Cell Permeable CP-TFs) by fusing a “MTD” to a reprogramming transcription factor recombinant protein.
Meanwhile, small molecules of synthetic compounds or compounds existing in nature can be transported into cells, whereas macromolecules, such as proteins, peptides, and nucleic acids, cannot due to the large molecular weight. It is widely understood that macromolecules larger than 500 kDa are incapable of penetrating a plasma membrane, i.e., the lipid bilayer structure, of living cells. In order to overcome this problem, “macromolecule intracellular transduction technology (MITT)” was developed, which allows the delivery of therapeutically effective macromolecules into cells, thereby facilitating the development of new biomolecular drugs using peptides, proteins, and genetic materials per se. According to this technology, a target macromolecule is fused to a “hydrophobic MTD” and other various transporters to cells, and is synthesized or expressed and purified in the form of a recombinant protein. Then, it is administered to a subject and can be delivered to a target site rapidly and accurately where its therapeutic effect is effectively shown. See also Korean Patent Application No. 10-2009-7017564; U.S. patent application Ser. No. 12/524,935; Canada Patent Application No. 2,676,797; Chinese Patent Application No. 200880003468.9; Australia Patent Application No. 2008211854; India Patent Application No. 5079/CHENP/2009; European Patent Application No. 08712219.8; and Japanese Patent Application No. 2009-547177 (which claim priority based on U.S. Provisional Patent Application No. 60/887,060). As such, MTDs allow the transport of many impermeable materials into the cells by being fused to peptides, proteins, DNA, RNA, synthetic compounds, and the like.
Accordingly, the inventors of the present invention have developed reprogramming transcription factor recombinant proteins imparted with cell permeability by fusing six types of transcription factors (Nanog, Oct4, Sox2, Klf4, c-Myc, and Lin28) to MTDs. The inventors found that these recombinant proteins can maintain pluripotency, self-renewal, and the undifferentiated state of human somatic cells, thereby inducing reprogramming safely without insertion of exogenous genes, and contemplated the present invention.
The objective of the present invention is to provide a cell permeable reprogramming transcription factor recombinant protein which can be introduced into a cell with high efficiency and can induce pluripotency of somatic cells, whereby induced pluripotent stem cells are established.
In order to achieve the objective above, the present invention provides a cell permeable reprogramming transcription factor recombinant protein by fusing a MTD to a reprogramming transcription factor. The recombinant protein can then introduce the reprogramming transcription factor into a cell with high efficiency.
The present invention also provides a polynucleotide encoding the cell permeable reprogramming transcription factor recombinant protein above.
The present invention further provides an expression vector comprising the polynucleotide above and a transformant prepared with such expression vector. In addition, the present invention provides a method of producing a cell permeable reprogramming transcription factor recombinant protein comprising culturing the transformant above.
Lastly, the present invention provides a cell permeable reprogramming transcription factor containing the cell permeable reprogramming transcription factor recombinant protein above as an active ingredient, which can establish induced pluripotent stem cells safely in a high yield.
The present invention provides cell permeable Nanog, Oct4, Sox2, Klf4, cMyc, and Lin28 recombinant proteins (CP-Nanog, CP-Oct4, CP-Sox2, CP-Klf4, CP-cMyc, and CP-Lin28) in which a MTD is fused to the reprogramming transcription factor, whereby the reprogramming transcription factor becomes cell permeable and can be introduced into a cell with high efficiency, and polynucleotides encoding the same.
The present invention uses proteins that acquired cell permeability by fusion of MTDs to Nanog, Oct4, Sox2, Klf4, cMyc, and Lin28 reprogramming transcription factors.
Among those, a recombinant protein in which a full length Nanog is fused to a nuclear localization sequence (NLS), i.e., NLS-Nanog (NNanog), has an amino acid sequence represented by SEQ ID NO: 20. NLS-Nanog can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 19.
The full length Nanog recombinant proteins prepared by using a JO-84 MTD (MTD84) may include the following:
NLS-MTD84-Nanog (NM84Nanog) has an amino acid sequence represented by SEQ ID NO: 22, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 21;
NLS-Nanog-MTD84 (NNanogM84) has an amino acid sequence represented by SEQ ID NO: 24, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 23; and
NLS-MTD84-Nanog-MTD84 (NM84NanogM84) has an amino acid sequence represented by SEQ ID NO: 26, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 25.
The full-length Nanog recombinant proteins prepared by using a JO-86 MTD (MTD86) may include the following:
NLS-MTD86-Nanog (NM86Nanog) has an amino acid sequence represented by SEQ ID NO: 28, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 27;
NLS-Nanog-MTD86 (NNanogM86) has an amino acid sequence represented by SEQ ID NO: 30, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 29; and
NLS-MTD86-Nanog-MTD86 (NM86NanogM86) has an amino acid sequence represented by SEQ ID NO: 32, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 31.
In addition, the Nanog recombinant protein described above may further comprise a His-tag for easy isolation and purification.
His-NLS-Nanog (HNNanog) has an amino acid sequence represented by SEQ ID NO: 34, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 33.
The full-length Nanog recombinant proteins prepared by using a JO-84 MTD (MTD84) may include the following:
His-NLS-MTD84-Nanog (HNM84Nanog) has an amino acid sequence represented by SEQ ID NO: 36, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 35;
His-NLS-Nanog-MTD84 (HNNanogM84) has an amino acid sequence represented by SEQ ID NO: 38, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 37; and
His-NLS-MTD84-Nanog-MTD84 (HNM84NanogM84) has an amino acid sequence represented by SEQ ID NO: 40, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 39.
The full-length Nanog recombinant proteins prepared by using a JO-86 MTD (MTD86) may include the following:
His-NLS-MTD86-Nanog (HNM86Nanog) has an amino acid sequence represented by SEQ ID NO: 42, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 41;
His-NLS-Nanog-MTD86 (HNNanogM86) has an amino acid sequence represented by SEQ ID NO: 44, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 43; and
His-NLS-MTD86-Nanog-MTD86 (HNM86NanogM86) has an amino acid sequence represented by SEQ ID NO: 46, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 45.
Further, His-NLS-MTD10-Nanog (HNM10Nanog) has an amino acid sequence represented by SEQ ID NO: 237, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 236.
The full-length Oct4 recombinant proteins fused to an NLS include NLS-Oct4 (NOct4), which has an amino acid sequence represented by SEQ ID NO: 48, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 47.
The full-length Oct4 recombinant proteins prepared by using a JO-84 MTD (MTD84) may include the following:
NLS-MTD84-Oct4 (NM84Oct4) has an amino acid sequence represented by SEQ ID NO: 50, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 49;
NLS-Oct4-MTD84 (NOct4M84) has an amino acid sequence represented by SEQ ID NO: 52, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 51; and
NLS-MTD84-Oct4-MTD84 (NM84Oct4M84) has an amino acid sequence represented by SEQ ID NO: 54, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 53.
The full-length Oct4 recombinant proteins prepared by using a JO-86 MTD (MTD86) may include the following:
NLS-MTD86-Oct4 (NM86Oct4) has an amino acid sequence represented by SEQ ID NO: 56, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 55;
NLS-Oct4MTD86 (NOct4M86) has an amino acid sequence represented by SEQ ID NO: 58, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 57; and
NLS-MTD86-Oct4-MTD86 (NM86Oct4M86) has an amino acid sequence represented by SEQ ID NO: 60, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 59.
In addition, the Oct4 recombinant protein described above may further comprise a His-tag for easy isolation and purification.
His-NLS-Oct4 (HNOct4) has an amino acid sequence represented by SEQ ID NO: 62, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 61.
The full-length Oct4 recombinant proteins prepared by using a JO-84 MTD (MTD84) may include the following:
His-NLS-MTD84-Oct4 (HNM84Oct4) has an amino acid sequence represented by SEQ ID NO: 64, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 63;
His-NLS-Oct4-MTD84 (HNOct4M84) has an amino acid sequence represented by SEQ ID NO: 66, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 65; and
His-NLS-MTD84-Oct4-MTD84 (HNM84Oct4M84) has an amino acid sequence represented by SEQ ID NO: 68, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 67.
The full-length Oct4 recombinant proteins prepared by using a JO-86 MTD (MTD86) may include the following:
His-NLS-MTD86-Oct4 (HNM86Oct4) has an amino acid sequence represented by SEQ ID NO: 70, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 69;
His-NLS-Oct4-MTD86 (HNOct4M86) has an amino acid sequence represented by SEQ ID NO: 72, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 71; and
His-NLS-MTD86-Oct4-MTD86 (HNM86Oct4M86) has an amino acid sequence represented by SEQ ID NO: 74, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 73.
Further, His-NLS-MTD52-Oct4 (HNM52Oct4) has an amino acid sequence represented by SEQ ID NO: 240, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 239.
The full-length Sox2 recombinant proteins fused to an NLS include NLS-Sox2 (NSox2), which has an amino acid sequence represented by SEQ ID NO: 76, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 75.
The full-length Sox2 recombinant proteins prepared by using a JO-84 MTD (MTD84) may include the following:
NLS-MTD84-Sox2 (NM84Sox2) has an amino acid sequence represented by SEQ ID NO: 78, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 77;
NLS-Sox2-MTD84 (NSox2M84) has an amino acid sequence represented by SEQ ID NO: 80, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 79; and
NLS-MTD84-Sox2-MTD84 (NM84Sox2M84) has an amino acid sequence represented by SEQ ID NO: 82, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 81.
The full-length Sox2 recombinant proteins prepared by using a JO-86 MTD (MTD86) may include the following:
NLS-MTD86-Sox2 (NM86Sox2) has an amino acid sequence represented by SEQ ID NO: 84, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 83;
NLS-Sox2-MTD86 (NSox2M86) has an amino acid sequence represented by SEQ ID NO: 86, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 85; and
NLS-MTD86-Sox2-MTD86 (NM86Sox2M86) has an amino acid sequence represented by SEQ ID NO: 88, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 87.
In addition, the Sox2 recombinant proteins described above may further comprise a His-tag for easy isolation and purification.
His-NLS-Sox2 (HNSox2) has an amino acid sequence represented by SEQ ID NO: 90, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 89.
The full-length Sox2 recombinant proteins prepared by using a JO-84 MTD (MTD84) may include the following:
His-NLS-MTD84-Sox2 (HNM84Sox2) has an amino acid sequence represented by SEQ ID NO: 92, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 91;
His-NLS-Sox2-MTD84 (HNSox2M84) has an amino acid sequence represented by SEQ ID NO: 94, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 93; and
His-NLS-MTD84-Sox2-MTD84 (HNM84Sox2M84) has an amino acid sequence represented by SEQ ID NO: 96, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 95.
The full-length Sox2 recombinant proteins prepared by using a JO-86 MTD (MTD86) may include the following:
His-NLS-MTD86-Sox2 (HNM86Sox2) has an amino acid sequence represented by SEQ ID NO: 98, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 97;
His-NLS-Sox2-MTD86 (HNSox2M86) has an amino acid sequence represented by SEQ ID NO: 100, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 99; and
His-NLS-MTD86-Sox2-MTD86 (HNM86Sox2M86) has an amino acid sequence represented by SEQ ID NO: 102, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 101.
Further, His-NLS-MTD181-Sox2 (HNM181Sox2) has an amino acid sequence represented by SEQ ID NO: 243, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 242.
The full length Klf4 recombinant proteins fused to an NLS include NLS-Klf4 (NKlf4), which has an amino acid sequence represented by SEQ ID NO: 104, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 103.
The full length Klf4 recombinant proteins prepared by using a JO-84 MTD (MTD84) may include the following:
NLS-MTD84-Klf4 (NM84Klf4) has an amino acid sequence represented by SEQ ID NO: 106, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 105;
NLS-Klf4-MTD84 (NKlf4M84) has an amino acid sequence represented by SEQ ID NO: 108, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 107; and
NLS-MTD84-Klf4-MTD84 (NM84Klf4M84) has an amino acid sequence represented by SEQ ID NO: 110, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 109.
The full length Klf4 recombinant proteins prepared by using a JO-86 MTD (MTD86) may include the following:
NLS-MTD86-Klf4 (NM86Klf4) has an amino acid sequence represented by SEQ ID NO: 112, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 111;
NLS-Klf4-MTD86 (NKlf4M86) has an amino acid sequence represented by SEQ ID NO: 114, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 113; and
NLS-MTD86-Klf4-MTD86 (NM86Klf4M86) has an amino acid sequence represented by SEQ ID NO: 116, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 115.
In addition, the Klf4 recombinant proteins described above may further comprise a His-tag for easy isolation and purification.
His-NLS-Klf4 (HNKlf4) has an amino acid sequence represented by SEQ ID NO: 118, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 117.
The full length Klf4 recombinant proteins prepared by using a JO-84 MTD (MTD84) may include the following:
His-NLS-MTD84-Klf4 (HNM84Klf4) has an amino acid sequence represented by SEQ ID NO: 120, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 119;
His-NLS-Klf4-MTD84 (HNKlf4M84) has an amino acid sequence represented by SEQ ID NO: 122, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 121; and
His-NLS-MTD84-Klf4-MTD84 (HNM84Klf4M84) has an amino acid sequence represented by SEQ ID NO: 124, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 123.
The full length Klf4 recombinant proteins prepared by using a JO-86 MTD (MTD86) may include the following:
His-NLS-MTD86-Klf4 (HNM86Klf4) has an amino acid sequence represented by SEQ ID NO: 126, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 125;
His-NLS-Klf4-MTD86 (HNKlf4M86) has an amino acid sequence represented by SEQ ID NO: 128, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 127; and
His-NLS-MTD86-Klf4-MTD86 (HNM86Klf4M86) has an amino acid sequence represented by SEQ ID NO: 130, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 129.
Further, His-NLS-MTD173-Klf4 (HNM173Klf4) has an amino acid sequence represented by SEQ ID NO: 246, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 245.
The full length cMyc recombinant proteins fused to a NLS include NLS-cMyc (NcMyc), which has an amino acid sequence represented by SEQ ID NO: 132, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 131.
The full length cMyc recombinant proteins prepared by using a JO-84 MTD (MTD84) may include the following:
NLS-MTD84-cMyc (NM84cMyc) has an amino acid sequence represented by SEQ ID NO: 134, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 133;
NLS-cMyc-MTD84 (NcMycM84) has an amino acid sequence represented by SEQ ID NO: 136, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 135; and
NLS-MTD84-cMyc-MTD84 (NM84cMycM84) has an amino acid sequence represented by SEQ ID NO: 138, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 137.
The full length cMyc recombinant proteins prepared by using a JO-86 MTD (MTD86) may include the following:
NLS-MTD86-cMyc (NM86cMyc) has an amino acid sequence represented by SEQ ID NO: 140, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 139;
NLS-cMyc-MTD86 (NcMycM86) has an amino acid sequence represented by SEQ ID NO: 142, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 141; and
NLS-MTD86-cMyc-MTD86 (NM86cMycM86) has an amino acid sequence represented by SEQ ID NO: 144, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 143.
In addition, the cMyc recombinant proteins described above may further comprise a His-tag for easy isolation and purification.
His-NLS-cMyc (HNcMyc) has an amino acid sequence represented by SEQ ID NO: 146, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 145.
The full length the cMyc recombinant proteins prepared by using a JO-84 MTD (MTD84) may include the following:
His-NLS-MTD84-cMyc (HNM84cMyc) has an amino acid sequence represented by SEQ ID NO: 148, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 147;
His-NLS-cMyc-MTD84 (HNcMycM84) has an amino acid sequence represented by SEQ ID NO: 150, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 149; and
His-NLS-MTD84-cMyc-MTD84 (HNM84cMycM84) has an amino acid sequence represented by SEQ ID NO: 152, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 151.
The full length cMyc recombinant proteins prepared by using a JO-86 MTD (MTD86) may include the following:
His-NLS-MTD86-cMyc (HNM86cMyc) has an amino acid sequence represented by SEQ ID NO: 154, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 153;
His-NLS-cMyc-MTD86 (HNcMycM86) has an amino acid sequence represented by SEQ ID NO: 156, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 155; and
His-NLS-MTD86-cMyc-MTD86 (HNM86cMycM86) has an amino acid sequence represented by SEQ ID NO: 158, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 157.
Further, His-NLS-MTD145-cMyc (HNM145cMyc) has an amino acid sequence represented by SEQ ID NO: 249, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 248.
The full length Lin28 recombinant proteins fused to an NLS may include NLS-Lin28 (NLin28), which has an amino acid sequence represented by SEQ ID NO: 160, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 159.
The full length Lin28 recombinant proteins prepared by using a JO-84 MTD (MTD84) may include the following:
NLS-MTD84-Lin28 (NM84Lin28) has an amino acid sequence represented by SEQ ID NO: 162, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 161;
NLS-Lin28-MTD84 (NLin28M84) has an amino acid sequence represented by SEQ ID NO: 164, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 163; and
NLS-MTD84-Lin28-MTD84 (NM84Lin28M84) has an amino acid sequence represented by SEQ ID NO: 166, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 165.
The full length Lin28 recombinant proteins prepared by using a JO-86 MTD (MTD86) may include the following:
NLS-MTD86-Lin28 (NM86Lin28) has an amino acid sequence represented by SEQ ID NO: 168, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 167;
NLS-Lin28-MTD86 (NLin28M86) has an amino acid sequence represented by SEQ ID NO: 170, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 169; and
NLS-MTD86-Lin28-MTD86 (NM86Lin28M86) has an amino acid sequence represented by SEQ ID NO: 172, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 171.
In addition, the Lin28 recombinant proteins described above may further comprise a His-tag for easy isolation and purification.
His-NLS-Lin28 (HNLin28) has an amino acid sequence represented by SEQ ID NO: 174, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 173.
The full length Lin28 recombinant proteins prepared by using a JO-84 MTD (MTD84) may include the following:
His-NLS-MTD84-Lin28 (HNM84Lin28) has an amino acid sequence represented by SEQ ID NO: 176, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 175;
His-NLS-Lin28-MTD84 (HNLin28M84) has an amino acid sequence represented by SEQ ID NO: 178, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 177; and
His-NLS-MTD84-Lin28-MTD84 (HNM84Lin28M84) has an amino acid sequence represented by SEQ ID NO: 180, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 179.
The full length the Lin28 recombinant proteins prepared by using a JO-86 MTD (MTD86) may include the following:
His-NLS-MTD86-Lin28 (HNM86Lin28) has an amino acid sequence represented by SEQ ID NO: 182, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 181;
His-NLS-Lin28-MTD86 (HNLin28M86) has an amino acid sequence represented by SEQ ID NO: 184, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 183; and
His-NLS-MTD86-Lin28-MTD86 (HNM86Lin28M86) has an amino acid sequence represented by SEQ ID NO: 186, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 185.
Further, His-NLS-MTD132-Lin28 (HNM132Lin28) has an amino acid sequence represented by SEQ ID NO: 252, and can be encoded by, for example, a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 251.
The present invention is characterized by providing a reprogramming transcription factor, which is a macromolecule incapable of being introduced into a cell, with cell permeability by fusing it to a specific macromolecule transduction domain (hereinafter, “MTD”) by MITT. Thus, the reprogramming transcription factor can be transported into a cell with high efficiency. The MTD may be fused to either one or both termini of the reprogramming transcription factor. MITT utilizing a hydrophobic polypeptide MTD derived from a secreted protein enables a cargo protein to penetrate through cell membranes by treatment of the protein only. Thus, the protein can be delivered into the nucleus.
Using this effect, reprogramming transcription factors that are not expressed in somatic cells can be delivered into cells. Thus, induced pluripotent stem cells can be safely established without insertion of exogenous genetic materials, such as viruses and plasmids, as in prior art.
The present invention has developed cell permeable reprogramming transcription factor recombinant proteins that are constructed by fusing each of the reprogramming transcription factors to a peptide domain capable of transporting a macromolecule into a cell, i.e., MTD.
The term “cell permeable reprogramming transcription factor recombinant protein” used herein refers to a covalently linked complex comprising an MTD and the reprogramming transcription factor, where they are linked by genetic fusion or chemical coupling. The term “genetic fusion” used herein refers to a linear, covalent linkage of proteins generated through genetic expression of a polynucleotide (DNA sequence) molecule encoding the proteins.
Nanog, a transcription factor capable of reprogramming somatic cells having a nucleotide sequence represented by SEQ ID NO: 1 and an amino acid sequence represented by SEQ ID NO: 2, maintains pluripotency of embryonic cells and inhibits differentiation of cells into an endoderm. This reprogramming transcription factor is composed of a domain consisting of amino acid residues 1 to 306 of the amino acid sequence of SEQ ID NO: 2.
Oct4, a transcription factor capable of reprogramming somatic cells having a nucleotide sequence represented by SEQ ID NO: 3 and an amino acid sequence represented by SEQ ID NO: 4, maintains pluripotency and regulates self-renewal of stem cells. This reprogramming transcription factor is composed of a domain consisting of amino acid residues 1 to 361 of the amino acid sequence of SEQ ID NO: 4.
Sox2, a transcription factor capable of reprogramming somatic cells having a nucleotide sequence represented by SEQ ID NO: 5 and an amino acid sequence represented by SEQ ID NO: 6, maintains pluripotency and regulates the undifferentiated state of stem cells. This reprogramming transcription factor is composed of a domain consisting of amino acid residues 1 to 318 of the amino acid sequence of SEQ ID NO: 6.
Klf4 is a transcription factor capable of reprogramming somatic cells having a nucleotide sequence represented by SEQ ID NO: 7 and an amino acid sequence represented by SEQ ID NO: 8. This reprogramming transcription factor induces reprogramming by inhibiting proliferation and regulating cell cycle. Klf4 is composed of a domain consisting of amino acid residues 1 to 471 of the amino acid sequence of SEQ ID NO: 8.
cMyc is a transcription factor capable of reprogramming somatic cells having a nucleotide sequence represented by SEQ ID NO: 9 and an amino acid sequence represented by SEQ ID NO: 10. This reprogramming transcription factor induces reprogramming by regulating cell growth, proliferation, apoptosis, and cell cycle. cMyc is composed of a domain consisting of amino acid residues 1 to 456 of the amino acid sequence of SEQ ID NO: 10.
Lin28 is a transcription factor capable of reprogramming somatic cells having a nucleotide sequence represented by SEQ ID NO: 11 and an amino acid sequence represented by SEQ ID NO: 12. This reprogramming transcription factor functions to regulate differentiation and proliferation of stem cells. Lin28 is composed of a domain consisting of amino acid residues 1 to 210 of the amino acid sequence of SEQ ID NO: 12.
As the MTD capable of being fused to the six types of reprogramming transcription factors, a cell permeable peptide having a nucleotide sequence represented by SEQ ID NO: 15 and an amino acid sequence represented by SEQ ID NO: 16 may be used.
As the MTD capable of being fused to the six types of reprogramming transcription factors, a cell permeable peptide having a nucleotide sequence represented by SEQ ID NO: 17 and an amino acid sequence represented by SEQ ID NO: 18 may be used.
As the MTD capable of being fused to the Nanog reprogramming transcription factor, a cell permeable peptide having a nucleotide sequence represented by SEQ ID NO: 223 and an amino acid sequence represented by SEQ ID NO: 224 may be used.
As the MTD capable of being fused to the Oct4 reprogramming transcription factor, a cell permeable peptide having a nucleotide sequence represented by SEQ ID NO: 225 and an amino acid sequence represented by SEQ ID NO: 226 may be used.
As the MTD capable of being fused to the Sox2 reprogramming transcription factor, a cell permeable peptide having a nucleotide sequence represented by SEQ ID NO: 233 and an amino acid sequence represented by SEQ ID NO: 234 may be used.
As the MTD capable of being fused to the Klf4 reprogramming transcription factor, a cell permeable peptide having a nucleotide sequence represented by SEQ ID NO: 231 and an amino acid sequence represented by SEQ ID NO: 232 may be used.
As the MTD capable of being fused to the cMyc reprogramming transcription factor, a cell permeable peptide having a nucleotide sequence represented by SEQ ID NO: 229 and an amino acid sequence represented by SEQ ID NO: 230 may be used.
As the MTD capable of being fused to the Lin28 reprogramming transcription factor, a cell permeable peptide having a nucleotide sequence represented by SEQ ID NO: 227 and an amino acid sequence represented by SEQ ID NO: 228 may be used.
MTDs having any one of the amino acid sequences represented by SEQ ID NOS: 16, 18, 224, 226, 228, 230, 232, or 234 described above are cell permeable polypeptides capable of mediating the transport of a biologically active molecule, such as a polypeptide, a protein domain, or a full-length protein, across the cell membrane.
The MTDs according to the present invention are designed to include a hydrophobic region having cell membrane-targeting activity by forming a helix which is derived from a signal peptide comprising three regions, i.e., an N-terminal region, a hydrophobic region, and a C-terminal region containing a secreted protein cleavage site. These MTDs can directly penetrate the cell membrane, while avoiding any cell damage, and deliver a target protein into a cell for it to exhibit its desired function.
The MTDs having any one of the amino acid sequences represented by SEQ ID NOS: 16, 18, 224, 226, 228, 230, 232, or 234 to be fused to the reprogramming transcription factors according to the present invention are summarized in Table 1 below.
Streptomyces
coelicolor
Mycobacterium
bovis
Streptomyces
coelicolor
Homo sapiens
Streptomyces
coelicolor
Streptomyces
coelicolor
Neisseria
meningitidis
The cell permeable reprogramming transcription factor recombinant proteins according to the present invention may have a structure where one of the eight MTDs above is fused to either one or both termini of the reprogramming transcription factor, and optionally, a nuclear localization sequence (NLS) derived from SV40 large T antigen or a histidine-tag (His-Tag) affinity domain can be fused to one terminus of this fused construct for easy purification.
The NLS that can be fused to the reprogramming transcription factors may include, but is not limited to, a polypeptide having an amino acid sequence represented by SEQ ID NO: 14 or encoded by a nucleotide represented by SEQ ID NO: 13. Any known NLS may be used.
In one embodiment of the present invention, one of the following MTDs is used for fusion with a reprogramming transcription factor: a JO-84 MTD having the amino acid sequence represented by SEQ ID NO: 16, which is derived from Streptomyces coelicolor (hereinafter, “MTD84”); a JO-86 MTD having the amino acid sequence represented by SEQ ID NO: 18, which is a secreted protein derived from Mycobacterium bovis (hereinafter, “MTD86”); a JO-10 MTD having the amino acid sequence represented by SEQ ID NO: 224, which is derived from Streptomyces coelicolor (hereinafter, “MTD10”); a JO-52 MTD having the amino acid sequence represented by SEQ ID NO: 226, which is derived from Homo Sapiens (hereinafter, “MTD52”); a JO-132 MTD having the amino acid sequence represented by SEQ ID NO: 228, which is derived from Streptomyces coelicolor (hereinafter, “MTD132”); a JO-145 MTD having the amino acid sequence represented by SEQ ID NO: 230, which is derived from Homo Sapiens Elastin (hereinafter, “MTD145”); a JO-173 MTD having the amino acid sequence represented by SEQ ID NO: 232, which is derived from Streptomyces coelicolor (hereinafter, “MTD173”); and a JO-181 MTD having the amino acid sequence represented by SEQ ID NO: 234, which is derived from Neisseria meningitidis (hereinafter, “MTD181”).
In a preferred embodiment of the present invention, two full-length forms of reprogramming transcription factor recombinant proteins using a JO-84 MTD or a JO-86 MTD are designed for each MTD.
Referring to
1) His-NLS-MTD84-Nanog (HNM84Nanog), wherein His-NLS and a JO-84 MTD are fused to the N-terminus of Nanog;
2) His-NLS-Nanog-MTD84 (HNNanogM84), wherein His-NLS is fused to the N-terminus and a JO-84 MTD is fused to the C-terminus of Nanog;
3) His-NLS-MTD84-Nanog-MTD84 (HNM84NanogM84), wherein His-NLS-JO-84 MTD is fused to the N-terminus and a JO-84 MTD is fused to the C-terminus of Nanog;
4) His-NLS-MTD86-Nanog (HNM86Nanog), wherein His-NLS and a JO-86 MTD are fused to the N-terminus of Nanog;
5) His-NLS-Nanog-MTD86 (HNNanogM86), wherein His-NLS is fused to the N-terminus and a JO-86 MTD is fused to the C-terminus of Nanog;
6) His-NLS-MTD86-Nanog-MTD86 (HNM86NanogM86), wherein His-NLS-JO-86 MTD is fused to the N-terminus and a JO-86 MTD is fused to the C-terminus of Nanog; or
7) His-NLS-MTD10-Nanog (HNM10Nanog), wherein His-NLS-JO-10 MTD is fused to the N-terminus of Nanog.
Optionally, the recombinant proteins 1) to 7) above may not include His-Tag.
Referring to
1) His-NLS-MTD84-Oct4 (HNM84Oct4), wherein His-NLS and JO-84 MTD are fused to the N-terminus of Oct4;
2) His-NLS-Oct4-MTD84 (HNOct4M84), wherein His-NLS is fused to the N-terminus and a JO-84 MTD is fused to the C-terminus of Oct4;
3) His-NLS-MTD84-Oct4-MTD84 (HNM84Oct4M84), wherein His-NLS-JO-84 MTD is fused to the N-terminus and a JO-84 MTD is fused to the C-terminus of Oct4;
4) His-NLS-MTD86-Oct4 (HNM86Oct4), wherein His-NLS and a JO-86 MTD are fused to the N-terminus of Oct4;
5) His-NLS-Oct4-MTD86 (HNOct4M86), wherein His-NLS is fused to the N-terminus and a JO-86 MTD is fused to the C-terminus of Oct4;
6) His-NLS-MTD86-Oct4-MTD86 (HNM86Oct4M86), wherein His-NLS-JO-86 MTD is fused to the N-terminus and a JO-86 MTD is fused to the C-terminus of Oct4; or
7) His-NLS-MTD52-Oct4 (HNM52Oct4), wherein His-NLS and a JO-52 MTD are fused to the N-terminus of Oct4.
Optionally, the recombinant proteins 1) to 7) above may not include His-Tag.
Referring to
1) His-NLS-MTD84-Sox2 (HNM84Sox2), wherein a His-NLS and a JO-84 MTD are fused to the N-terminus of Sox2;
2) His-NLS-Sox2-MTD84 (HNSox2M84), wherein a His-NLS is fused to the N-terminus and a JO-84 MTD is fused to the C-terminus of Sox2;
3) His-NLS-MTD84-Sox2-MTD84 (HNM84Sox2M84), wherein a His-NLS-JO-84 MTD is fused to the N-terminus and a JO-84 MTD is fused to the C-terminus of Sox2;
4) His-NLS-MTD86-Sox2 (HNM86Sox2), wherein a His-NLS and a JO-86 MTD are fused to the N-terminus of Sox2;
5) His-NLS-Sox2-MTD86 (HNSox2M86), wherein a His-NLS is fused to the N-terminus and a JO-86 MTD is fused to the C-terminus of Sox2;
6) His-NLS-MTD86-Sox2-MTD86 (HNM86Sox2M86), wherein a His-NLS-JO-86 MTD is fused to the N-terminus and a JO-86 MTD is fused to the C-terminus of Sox2; or
7) His-NLS-MTD181-Sox2 (HNM181Sox2), wherein a His-NLS is fused to the N-terminus and a JO-181 MTD is fused to the C-terminus of Sox2.
Optionally, the recombinant proteins 1) to 7) above may not include His-Tag.
Referring to
1) His-NLS-MTD84-Klf4 (HNM84Klf4), wherein a His-NLS and a JO-84 MTD are fused to the N-terminus of Klf4;
2) His-NLS-Klf4-MTD84 (HNKlf4M84), wherein a His-NLS is fused to the N-terminus and a JO-84 MTD is fused to the C-terminus of Klf4;
3) His-NLS-MTD84-Klf4-MTD84 (HNM84Klf4M84), wherein a His-NLS-JO-84 MTD is fused to the N-terminus and a JO-84 MTD is fused to the C-terminus of Klf4;
4) His-NLS-MTD86-Klf4 (HNM86Klf4), wherein a His-NLS and a JO-86 MTD are fused to the N-terminus of Klf4;
5) His-NLS-Klf4-MTD86 (HNKlf4M86), wherein a His-NLS is fused to the N-terminus and a JO-86 MTD is fused to the C-terminus of Klf4;
6) His-NLS-MTD86-Klf4-MTD86 (HNM86Klf4M86), wherein a His-NLS-JO-86 MTD is fused to the N-terminus and a JO-86 MTD is fused to the C-terminus of Klf4; or
7) His-NLS-MTD173-Klf4 (HNM173Klf4), wherein a His-NLS and a JO-173 MTD are fused to the N-terminus of Klf4.
Optionally, the recombinant proteins 1) to 7) above may not include His-Tag.
Referring to
1) His-NLS-MTD84-cMyc (HNM84cMyc), wherein a His-NLS and a JO-84 MTD are fused to the N-terminus of cMyc;
2) His-NLS-cMyc-MTD84 (HNcMycM84), wherein a His-NLS is fused to the N-terminus and a JO-84 MTD is fused to the C-terminus of cMyc;
3) His-NLS-MTD84-cMyc-MTD84 (HNM84cMycM84), wherein a His-NLS-JO-84 MTD is fused to the N-terminus and a JO-84 MTD is fused to the C-terminus of cMyc;
4) His-NLS-MTD86-cMyc (HNM86cMyc), wherein a His-NLS and a JO-86 MTD are fused to the N-terminus of cMyc,
5) His-NLS-cMyc-MTD86 (HNcMycM86), wherein a His-NLS is fused to the N-terminus and a JO-86 MTD is fused to the C-terminus of cMyc,
6) His-NLS-MTD86-cMyc-MTD86 (HNM86cMycM86), wherein a His-NLS-JO-86 MTD is fused to the N-terminus and a JO-86 MTD is fused to the C-terminus of cMyc, or
7) His-NLS-MTD145-cMyc (HNM145cMyc), wherein a His-NLS and a JO-145 MTD are fused to the N-terminus of cMyc.
Optionally, the recombinant proteins 1) to 7) above may not include His-Tag.
Referring to
1) His-NLS-MTD84-Lin28 (HNM84Lin28), wherein His-NLS and a JO-84 MTD are fused to the N-terminus of Lin28;
2) His-NLS-Lin28-MTD84 (HNLin28M84), wherein a His-NLS is fused to the N-terminus and a JO-84 MTD is fused to the C-terminus of Lin28;
3) His-NLS-MTD84-Lin28-MTD84 (HNM84Lin28M84), wherein a His-NLS-JO-84 MTD is fused to the N-terminus and a JO-84 MTD is fused to the C-terminus of Lin28;
4) His-NLS-MTD86-Lin28 (HNM86Lin28), wherein a His-NLS and a JO-86 MTD are fused to the N-terminus of Lin28;
5) His-NLS-Lin28-MTD86 (HNLin28M86), wherein a His-NLS is fused to the N-terminus and a JO-86 MTD is fused to the C-terminus of Lin28;
6) His-NLS-MTD86-Lin28-MTD86 (HNM86Lin28M86), wherein a His-NLS-JO-86 MTD is fused to the N-terminus and a JO-86 MTD is fused to the C-terminus of Lin28; or
7) His-NLS-MTD132-Lin28 (HNM132Lin28), wherein a His-NLS and a JO-132 MTD are fused to the N-terminus of Lin28.
Optionally, the recombinant proteins 1) to 7) above may not include His-Tag.
As a control for the cell permeable Nanog recombinant proteins, His-NLS-Nanog (HNNanog), wherein only NLS and a histidine-tag are fused to Nanog without any MTDs, is prepared. This control protein has an amino acid sequence represented by SEQ ID NO: 34 and can be encoded by a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 33.
As a control for the cell permeable Oct4 recombinant proteins, His-NLS-Oct4 (HNOct4), wherein only NLS and a histidine-tag are fused to Oct4 without any MTDs, is prepared. This control protein has an amino acid sequence represented by SEQ ID NO: 62 and can be encoded by a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 61.
As a control for the cell permeable Sox2 recombinant proteins, His-NLS-Sox2 (HNSox2), wherein only NLS and a histidine-tag are fused to Sox2 without any MTDs, is prepared. This control protein has an amino acid sequence represented by SEQ ID NO: 90 and can be encoded by a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 89.
As a control for the cell permeable Klf4 recombinant proteins, His-NLS-Klf4 (HNKlf4), wherein only NLS and a histidine-tag are fused to Klf4 without any MTDs, is prepared. This control protein has an amino acid sequence represented by SEQ ID NO: 118 and can be encoded by a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 117.
As a control for the cell permeable cMyc recombinant proteins, His-NLS-cMyc (HNcMyc), wherein only NLS and a histidine-tag are fused to cMyc without any MTDs, is prepared. This control protein has an amino acid sequence represented by SEQ ID NO: 146 and can be encoded by a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 145.
As a control for the cell permeable Lin28 recombinant proteins, His-NLS-Lin28 (HNLin28), wherein only NLS and a histidine-tag are fused to Lin28 without any MTDs, is prepared. This control protein has an amino acid sequence represented by SEQ ID NO: 174 and can be encoded by a polynucleotide having a nucleotide sequence represented by SEQ ID NO: 173.
Further, the present invention provides a recombinant expression vector comprising the polynucleotide encoding the cell permeable reprogramming transcription factor recombinant proteins described above, and a transformant prepared with this expression vector.
The term “recombinant expression vector” as used herein is a vector capable of expressing a target protein or a target RNA in a suitable host cell, and refers to a genetic construct comprising necessary regulatory elements operably linked to an insert gene such that the insert can be properly expressed.
As used herein, the term “operably linked” means that a nucleotide sequence encoding a target protein or a target RNA is functionally linked to regulatory elements in a manner that allows for the expression of the nucleotide sequence. For example, a promoter can be operably linked to a nucleotide sequence encoding a target protein or RNA to influence the expression of the nucleotide sequence. An operable linkage with an recombinant expression vector can be achieved by conventional gene recombinant techniques known in the art, while site-specific DNA cleavage and ligation are carried out by using conventional enzymes.
The expression vectors that can be used in the present invention may include, but are not limited to, plasmid vectors, cosmid vectors, bacteriophage vectors, viral vectors, etc. Suitable expression vectors may include a signal sequence or a leader sequence for membrane targeting or secretion, as well as regulatory sequences such as a promoter, an operator, an initiation codon, a termination codon, a polyadenylation signal, an enhancer, and the like. It can be prepared in various ways depending on the desired purpose. The promoter may be constitutive or inducible. Further, the expression vector may include one or more selection markers for screening a host cell containing the expression vector. In the case of a replicable expression vector, it may include a nucleotide sequence of the origin of replication.
The recombinant expression vector according to the present invention as constructed above may be, for example, pET28a(+)-HNM86Nanog, pET28a(+)-HNM86Oct4, pET28a(+)-HNM86Sox2M86, pET28a(+)-HNM86Klf4M86, pET28a(+)-HNM86cMyc. In the recombinant expression vector encoding the cell permeable reprogramming transcription factor recombinant proteins according to the present invention, a polynucleotide encoding HM86Nanog where a JO-86 MTD is fused to the N-terminus of Nanog; HM86Oct4 where a JO-86 MTD is fused to the N-terminus of Oct4; HM86Sox2M86 where a JO-86 MTD is fused to the N-terminus and the C-terminus of Sox2; HM86Klf4M86 where a JO-86 MTD is fused to the N-terminus and the C-terminus of Klf4; or HM86cMyc where a JO-86 MTD is fused to the N-terminus of cMyc is inserted in the NdeI restriction site within the multiple cloning sites (MCS) of a pET-28a(+) vector (Novagen, Germany).
In one embodiment of the present invention, the nucleotide sequence of the present invention is cloned into a pET-28a(+) vector (Novagen, Germany) having a His-Tag sequence so that the six cell permeable reprogramming transcription factor recombinant proteins have 6 histidine tags, which facilitate purification, expressed at the N-terminus.
The six cell permeable reprogramming transcription factor recombinant proteins expressed in the recombinant expression vector above have a structure where any one of JO-10 MTD, JO-52 MTD, JO-84 MTD, JO-86 MTD, JO-132 MTD, JO-145 MTD, JO-173 MTD, or JO-181 MTD is fused to either one or both termini of the recombinant proteins, and a His-Tag and/or NLS are linked to the N-terminus thereof.
The present invention further provides a transformant that is obtained by transforming a host cell with the recombinant expression vector above. Host cells suitable for the present invention may preferably be E. coli. E. coli may be transformed with the recombinant expression vector of the present invention, for example, pET28a(+)-HNM86Nanog comprising a polynucleotide encoding HM86Nanog in which a JO-86 MTD is fused to the N-terminus of the Nanog. The transformant thus obtained can be used to produce the cell permeable reprogramming transcription factor recombinant protein in large amounts. Any method of introducing a nucleic acid into a host cell may be used for the transformation. Any transformation techniques well known in the art may be used. Preferably, the methods may include, but are not limited to, microprojectile bombardment, electroporation, calcium phosphate (CaHPO4) precipitation, calcium chloride (CaCl2) precipitation, PEG-mediated fusion, microinjection, and liposome-mediated method.
In a preferred embodiment of the present invention, E. coli DH5α was transformed with the recombinant protein expression vectors prepared as described above, where NLS and JO-86 MTD are fused to the six reprogramming transcription factors. The transformant containing pET28a(+)-HNM86Oct4 was deposited with the Korean Collection for Type Cultures (KCTC), Korea Research Institute of Bioscience and Biotechnology (KRIBB), on Feb. 17, 2010 as Deposit No. KCTC11640BP. E. coli DH5α was transformed with the recombinant expression vectors comprising pET28a(+)-HNM10Nanog including JO-10 MTD, pET28a(+)-HNM181Sox2 including JO-181 MTD, pET28a(+)-HNM86cMyc including JO-86 MTD, pET28a(+)-HNM173Klf4 including JO-173 MTD, and pET28a(+)-HNM132Lin28 including JO-132 MTD to obtain transformants, respectively. These transformants were deposited with the Korean Collection for Type Cultures (KCTC), Korea Research Institute of Bioscience and Biotechnology (KRIBB), on Mar. 10, 2010 as Deposit Nos. KCTC11660BP, KCTC11659BP, KCTC11661BP, KCTC11662BP, and KCTC11663BP, respectively.
The present invention also provides a method of producing six kinds of cell permeable reprogramming transcription factor recombinant proteins comprising culturing the transformant.
The production method above is carried out by culturing the transformant in a suitable medium under suitable conditions so that a polynucleotide encoding the cell permeable reprogramming transcription factor recombinant protein of the present invention can be expressed. The method above is well known in the art and, for example, may be carried out by inoculating a transformant in a suitable medium for growing the transformant, performing a subculture, transferring the same to a main culture medium, culturing it under suitable conditions, for example, in the presence of isopropyl-β-D-thiogalactoside (IPTG), a gene expression inducer, thereby inducing the expression of the recombinant protein. After the culture is completed, it is possible to recover a substantially pure recombinant protein from the culture solution above. The term “substantially pure” means that the recombinant protein of the present invention and the polynucleotide encoding the same are essentially free of other proteins derived from the host cell.
The recombinant protein obtained above may be recovered by various isolation and purification methods known in the art. Conventionally, cell lysates are centrifuged to remove cell debris and impurities, and then subject to precipitation by, for example, salting out (ammonium sulfate precipitation or sodium phosphate precipitation) or solvent precipitation (protein-containing fragment precipitation using acetone, ethanol, etc.). Further, dialysis, electrophoresis, and various column chromatographies may be performed. With respect to chromatography, ion exchange chromatography, gel permeation chromatography, HPLC, reverse phase HPLC, affinity column chromatography, and ultrafiltration may be used alone or in combination (Maniatis et al., Molecular Cloning: A Laboratory Manual, Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y., 1982; Sambrook et al., Molecular Cloning: A Laboratory Manual, 2d Ed., Cold Spring Harbor Laboratory Press, 1989; Deutscher, M., Guide to Protein Purification Methods Enzymology vol. 182. Academic Press. Inc., San Diego, Calif., 1990).
Meanwhile, the recombinant protein expressed in the transformant transformed with the recombinant expression vector can be separated into a soluble fraction and an insoluble fraction according to the characteristics of the proteins during protein purification. If the majority of the expressed recombinant proteins are present in the soluble fraction, the recombinant protein can easily be isolated and purified according to the method described above. However, when the majority of the expressed recombinant proteins are present in the insoluble fraction, i.e., as inclusion bodies, the recombinant proteins can be solubilized using polypeptide denaturing agents, e.g., urea or surfactants, and then, centrifuged, followed by various treatments, such as dialysis, electrophoresis, and column chromatography for purification. Since there is a risk of losing the recombinant protein's activity due to structural modifications caused by solutions containing polypeptide denaturing agents, the process of purifying the recombinant protein from the insoluble fraction requires desalting and refolding steps. Namely, the desalting and refolding steps can be performed by dialysis and dilution with a solution that does not include a polypeptide denaturing agent or by centrifugation with a filter. Further, if the salt concentration of a solution used for the purification of a recombinant protein from a soluble fraction is high, such desalting and refolding steps may also be performed.
In one embodiment of the present invention, if it is confirmed that the cell permeable reprogramming transcription factor recombinant proteins of the present invention are present in the insoluble fraction as inclusion bodies, in order to purify the recombinant protein from the insoluble fraction, the insoluble fraction may be dissolved in a lysis buffer containing a non-ionic surfactant such as Triton X-100, subjected to ultrasonification, and then centrifuged to separate the precipitate. The resulting precipitate may be dissolved in a buffer containing a denaturing agent, such as urea, and centrifuged to separate the supernatant. The recombinant protein of the present invention, which is obtained by dissolving the insoluble fraction to the maximum extent with urea, was purified by means of a histidine-binding protein purification kit and subjected to dialysis, for example, by using an amicon filter for salt removal and protein refolding, thereby obtaining the purified recombinant protein of the present invention.
Further, the present invention provides a composition comprising the six cell permeable reprogramming transcription factor proteins described above. The composition according to the present invention is capable of establishing induced pluripotent stem cells when treated on somatic cells free of any reprogramming transcription factor.
This composition is capable of inducing pluripotency and self-renewal in a cell while maintaining the undifferentiated state of the cell by introducing a cell permeable reprogramming transcription factor into the nucleus of the cell with high efficiency. In addition, the composition can be usefully employed to induce reprogramming of somatic cells by activating genes specifically expressed in stem cells, thereby enabling establishment of induced pluripotent stem cells which are similar to embryonic stem cells.
Hereinafter, the embodiments of the present invention will be described in more detail with reference to the following examples. However, the examples are only provided for purposes of illustration and are not to be construed as limiting the scope of the invention.
In order to prepare gene constructs of the above-described recombinant proteins, polymerase chain reactions (PCRs) were carried out using a primer pair specifically designed for each construct and human Nanog, Oct4, Sox2, Klf4, c-Myc, and Lin28 cDNAs as a template.
The forward and reverse primers for amplifying HNNanog have nucleotide sequences represented by SEQ ID NOS: 187 and 188, respectively;
Those for amplifying HNM84Nanog have nucleotide sequences represented by SEQ ID NOS: 189 and 188, respectively;
Those for amplifying HNNanogM84 have nucleotide sequences represented by SEQ ID NOS: 187 and 190, respectively;
Those for amplifying HNM84NanogM84 have nucleotide sequences represented by SEQ ID NOS: 189 and 190, respectively;
Those for amplifying HNM86Nanog have nucleotide sequences represented by SEQ ID NOS: 191 and 188, respectively;
Those for amplifying HNNanogM86 have nucleotide sequences represented by SEQ ID NOS: 187 and 192, respectively;
Those for amplifying HNM86NanogM86 have nucleotide sequences represented by SEQ ID NOS: 191 and 192, respectively;
Those for amplifying HNOct4 have nucleotide sequences represented by SEQ ID NOS: 193 and 194, respectively;
Those for amplifying HN M84Oct4 have nucleotide sequences represented by SEQ ID NOS: 195 and 194, respectively;
Those for amplifying HNOct4M84 have nucleotide sequences represented by SEQ ID NOS: 193 and 190, respectively;
Those for amplifying HNM84Oct4M84 have nucleotide sequences represented by SEQ ID NOS: 195 and 196, respectively;
Those for amplifying HNM86Oct4 have nucleotide sequences represented by SEQ ID NOS: 197 and 194, respectively;
Those for amplifying HNOct4M86 have nucleotide sequences represented by SEQ ID NOS: 193 and 198, respectively;
Those for amplifying HNM86Oct4M86 have nucleotide sequences represented by SEQ ID NOS: 197 and 198, respectively;
Those for amplifying HNSox2 have nucleotide sequences represented by SEQ ID NOS: 199 and 200, respectively;
Those for amplifying HNM84Sox2 have nucleotide sequences represented by SEQ ID NOS: 201 and 200, respectively;
Those for amplifying HNSox2M84 have nucleotide sequences represented by SEQ ID NOS: 199 and 202, respectively;
Those for amplifying HNM84Sox2M84 have nucleotide sequences represented by SEQ ID NOS: 201 and 202, respectively;
Those for amplifying HNM86Sox2 have nucleotide sequences represented by SEQ ID NOS: 203 and 200, respectively;
Those for amplifying HNSox2M86 have nucleotide sequences represented by SEQ ID NOS: 199 and 204, respectively;
Those for amplifying HNM86Sox2M86 have nucleotide sequences represented by SEQ ID NOS: 203 and 204, respectively;
Those for amplifying HNKlf4 have nucleotide sequences represented by SEQ ID NOS: 205 and 206, respectively;
Those for amplifying HNM84Klf4 have nucleotide sequences represented by SEQ ID NOS: 207 and 206, respectively;
Those for amplifying HNKlf4M84 have nucleotide sequences represented by SEQ ID NOS: 205 and 208, respectively;
Those for amplifying HNM84Klf4M84 have nucleotide sequences represented by SEQ ID NOS: 207 and 208, respectively;
Those for amplifying HNM86Klf4 have nucleotide sequences represented by SEQ ID NOS: 209 and 206, respectively;
Those for amplifying HNKlf4M86 have nucleotide sequences represented by SEQ ID NOS: 205 and 210, respectively;
Those for amplifying HNM86Klf4M86 have nucleotide sequences represented by SEQ ID NOS: 209 and 210, respectively;
Those for amplifying HNcMyc have nucleotide sequences represented by SEQ ID NOS: 211 and 212, respectively;
Those for amplifying HNM84cMyc have nucleotide sequences represented by SEQ ID NOS: 213 and 212, respectively;
Those for amplifying HNcMycM84 have nucleotide sequences represented by SEQ ID NOS: 211 and 214, respectively;
Those for amplifying HNM84cMycM84 have nucleotide sequences represented by SEQ ID NOS: 213 and 214, respectively;
Those for amplifying HNM86cMyc have nucleotide sequences represented by SEQ ID NOS: 215 and 212, respectively;
Those for amplifying HNcMycM86 have nucleotide sequences represented by SEQ ID NOS: 211 and 216, respectively;
Those for amplifying HNM86cMycM86 have nucleotide sequences represented by SEQ ID NOS: 215 and 216, respectively;
Those for amplifying HNLin28 have nucleotide sequences represented by SEQ ID NOS: 217 and 218, respectively;
Those for amplifying HNM84Lin28 have nucleotide sequences represented by SEQ ID NOS: 219 and 218, respectively;
Those for amplifying HNLin28M84 have nucleotide sequences represented by SEQ ID NOS: 217 and 220, respectively;
Those for amplifying HNM84Lin28M84 have nucleotide sequences represented by SEQ ID NOS: 219 and 220, respectively;
Those for amplifying HNM86Lin28 have nucleotide sequences represented by SEQ ID NOS: 221 and 218, respectively;
Those for amplifying HNLin28M86 have nucleotide sequences represented by SEQ ID NOS: 217 and 222, respectively; and
Those for amplifying HNM86Lin28M86 have nucleotide sequences represented by SEQ ID NOS: 221 and 222, respectively.
The PCRs above were carried out in a 100 μl final volume reaction mixture containing 100 ng of human Nanog, Oct4, Sox2, Klf4, c-Myc, or Lin28 cDNAs as a template, 0.2 mM (final concentration) of a dNTP mixture (dGTP, dATP, dTTP, and dCTP, each at 2 mM), 0.5 μM of primers, 10 μl of a 10× Taq buffer, and 0.5 μl of Taq polymerase (Takara, Japan). The PCR reactions were performed 30 cycles at 95° C. for 45 seconds, 67° C. for 45 seconds, and 72° C. for 45 seconds after the initial denaturation at 95° C. for 2 minutes, followed by the final amplification at 72° C. for 5 minutes. After the reaction was completed, the amplified products were confirmed by electrophoresis on a 0.8% agarose gel.
After recovering the amplified recombinant fragments from the agarose gel, each recombinant fragment was extracted and purified using a commonly used kit (QIAquick Gel extraction kit, Qiagen, USA). The extracted fragments were inserted into a pGEM-T Easy vector (Promega, USA) and E. coli DH5α competent cells were transformed with the pGEM-T Easy vector in which an MTD-fused Nanog, Oct4, Sox2, Klf4,c-Myc, or Lin28 recombinant protein gene fragment was subcloned. The cells were plated onto an LB medium supplemented with 50 μg/ml ampicillin and cultured at 37° C. overnight. The transformed E. coli was screened and inoculated in the LB medium again to obtain pGEM-T Easy vectors in which a Nanog, Oct4, Sox2, Klf4,c-Myc, or Lin28 recombinant protein gene was inserted. As a result, a large amount of vectors were obtained.
The recombinant fragment-inserted pGEM-T Easy vectors were treated by an NdeI restriction enzyme (Enzynomics, Korea) to isolate the recombinant fragments. The isolated recombinant fragments were subjected to 0.8% agarose gel electrophoresis. As a result, the successful subcloning of each recombinant fragment into the vector was confirmed.
The pGEM-T Easy vectors in which a Nanog, Oct4, Sox2, Klf4, c-Myc, or Lin28 recombinant protein gene was inserted were digested with NdeI at 37° C. for 2 hours to obtain the recombinant fragment for each vector. After recovering the recombinant fragments from the agarose gel, each recombinant fragment was extracted and purified using a commonly used kit (QIAquick Gel extraction kit, Qiagen, USA) Meanwhile, an expression vector comprising a His-Tag and a T7 promoter, pET-28a(+) (Novagen, USA) was digested with NdeI under the same conditions above. Each of the recombinant fragments obtained above was admixed with the digested pET-28a(+) vector. With the addition of a T4 DNA ligase (Takara, Japan), the mixture was subjected to ligation at 16° C. for 12 hours. E. coli DH5α supercompetent cells were transformed to obtain the recombinant protein expression vectors.
The recombinant fragment-inserted pET-28a(+) vectors were treated by an NdeI restriction enzyme to isolate the recombinant fragments and the isolated recombinant fragments were subjected to 0.8% agarose gel electrophoresis. As a result, the successful subcloning of each recombinant fragment into the vector was confirmed.
The recombinant protein expression vectors thus obtained were designated as pET28a(+)-HNNanog, pET28a(+)-HNM84Nanog, pET28a(+)-HNNanogM84, pET28a(+)-HNM84NanogM84, pET28a(+)-HNM86Nanog, pET28a(+)-HNNanogM86, pET28a(+)-HNM86NanogM86, pET28a(+)-HNOct4, pET28a(+)-HNM84Oct4, pET28a(+)-HNOct4M84, pET28a(+)-HNM84Oct4M84, pET28a(+)-HNM86Oct4, pET28a(+)-HNOct4M86, pET28a(+)-HNM86Oct4M86, pET28a(+)-HNSox2, pET28a(+)-HNM84Sox2, pET28a(+)-HNSox2M84, pET28a(+)-HNM84Sox2M84, pET28a(+)-HNM86Sox2, pET28a(+)-HNSox2M86, pET28a(+)-HNM86Sox2M86, pET28a(+)-HNKlf4, pET28a(+)-HNM84Klf4, pET28a(+)-HNKlf4M84, pET28a(+)-HNM84Klf4M84, pET28a(+)-HNM86Klf4, pET28a(+)-HNKlf4M86, pET28a(+)-HNM86Klf4M86, pET28a(+)-HNcMyc, pET28a(+)-HNM84cMyc, pET28a(+)-HNcMycM84, pET28a(+)-HNM84cMycM84, pET28a(+)-HNM86cMyc, pET28a(+)-HNcMycM86, pET28a(+)-HNM86cMycM86, pET28a(+)-HNLin28, pET28a(+)-HNM84Lin28, pET28a(+)-HNLin28M84, pET28a(+)-HNM84Lin28M84, pET28a(+)-HNM86Lin28, pET28a(+)-HN Lin28M86, and pET28a(+)-HNM86Lin28M86, respectively.
E. coli BL21 CodonPlus (DE3) was transformed with each of the following recombinant expression vectors, i.e., pET28a(+)-HNNanog, pET28a(+)-HNM84Nanog, pET28a(+)-HNNanogM84, pET28a(+)-HNM84NanogM84, pET28a(+)-HNM86Nanog, pET28a(+)-HNNanogM86, pET28a(+)-HNM86NanogM86, pET28a(+)-HNM10Nanog, pET28a(+)-HNOct4, pET28a(+)-HNM84Oct4, pET28a(+)-HNOct4M84, pET28a(+)-HNM84Oct4M84, pET28a(+)-HNM86Oct4, pET28a(+)-HNOct4M86, pET28a(+)-HNM86Oct4M86, pET28a(+)-HNM52Oct4, pET28a(+)-HNSox2, pET28a(+)-HNM84Sox2, pET28a(+)-HNSox2M84, pET28a(+)-HNM84Sox2M84, pET28a(+)-HNM86Sox2, pET28a(+)-HNSox2M86, pET28a(+)-HNM86Sox2M86, pET28a(+)-HNM181Sox2, pET28a(+)-HNKlf4, pET28a(+)-HNM84Klf4, pET28a(+)-HNKlf4M84, pET28a(+)-HNM84Klf4M84, pET28a(+)-HNM86Klf4, pET28a(+)-HNKlf4M86, pET28a(+)-HNM86Klf4M86, pET28a(+)-HNM173Klf4, pET28a(+)-HNcMyc, pET28a(+)-HNM84cMyc, pET28a(+)-HNcMycM84, pET28a(+)-HNM84cMycM84, pET28a(+)-HNM86cMyc, pET28a(+)-HNcMycM86, pET28a(+)-HNM86cMycM86, pET28a(+)-HNM145cMyc, pET28a(+)-HNLin28, pET28a(+)-HNM84Lin28, pET28a(+)-HNLin28M84, pET28a(+)-HNM84Lin28M84, pET28a(+)-HNM86Lin28, pET28a(+)-HN Lin28M86, pET28a(+)-HNM86Lin28M86, and pET28a(+)-HNM132Lin28, by a heat shock method. The transformants were cultured in an LB medium containing 50 μg/ml of kanamycin. Thereafter, E. coli transformed with DNA encoding the recombinant protein was inoculated in 25 ml of an LB medium and cultured at 37° C. overnight, and then inoculated again in 1 L of an LB medium and cultured at 37° C. until the optical density OD600 reached 0.6 to 0.7. To the culture was added 0.65 mM isopropyl-β-D-thiogalactoside (IPTG) as a protein expression inducer, followed by incubation at 37° C. for an additional 3 hours. This culture was centrifuged at 4° C. at a speed of 4,000×g for 20 minutes to remove the supernatant and bacterial cells were harvested. The harvested bacterial cells were suspended in a lysis buffer (100 mM NaH2PO4, 10 mM Tris-HCl, 8 M urea, pH 8.0) and the suspension was subject to sonication to disrupt the cells. The cell lysates were centrifuged at a speed of 14,000×g for 15 minutes to separate the insoluble fraction from the soluble fraction. The soluble and insoluble fractions thus obtained were loaded on an SDS-PAGE gel separately to analyze the protein expression profile and the degree of expression.
As shown in
Since the cell permeable reprogramming transcription factor recombinant proteins according to the present invention are present in the insoluble fraction as inclusion bodies, 8 M urea was used as a strong denaturing agent to separate these proteins from the insoluble fraction.
First, the BL21 CodonPlus (DE3) strains transformed with each of the expression vectors of the present invention were cultured in 1 L of an LB medium as described in Example 1 above. Each culture solution was centrifuged to harvest the bacterial cells. The obtained bacterial cells were gently suspended in 20 ml of a lysis buffer (100 mM NaH2PO4, 10 mM Tris-HCl, 8 M urea, pH 8.0) carefully so as to avoid forming bubbles, and homogenized at a low temperature using an ultrasonic homogenizer equipped with a microtip to destruct the cells. Here, the power was set at 25% the maximum power, while a 45 second sonication followed by a 10 second pause was repeated for 7 minutes. The sufficiently lysed inclusion bodies were centrifuged at 4° C. at a speed of 4,000×g for 20 minutes to remove the cell precipitate and recover the supernatant. The recovered supernatant was loaded onto an Ni-NTA agarose resin where nickel (Ni) was added on nitrilotriacetic acid agarose. The Ni-NTA agarose was used after equilibration by washing with a lysis buffer prior to use. The supernatant was allowed to absorb onto the resin while slowly stirring using a rotary shaker for at least 8 hours at 4° C. The resin absorbed with the inclusion bodies containing the recombinant protein was centrifuged at 4° C. at a speed of 1,000 rpm for 5 minutes to remove the reaction solution and then washed with a washing buffer (100 mM NaH2PO4, 10 mM Tris-HCl, 8 M urea, pH 6.3) five times to remove the non-specifically absorbed materials. Onto the washed resin was loaded an elution buffer (100 mM HaH2PO4, 10 mM Tris-HCl, 8 M urea, pH 4.5) in a volume that is twice the resin volume under acidic conditions of pH 4.0, followed by stirring in a shaker for 2 hours or at least 8 hours to elute the protein. In order to analyze the purity of the eluted protein, electrophoresis was carried out on a 12% SDS-PAGE gel, and subsequently, the gel was stained with Coomassie Brilliant Blue R with gentle shaking, and de-stained with a de-staining solution until the band of the target protein could be seen clearly.
As a result, as shown in
Since the recombinant proteins of the present invention purified from the insoluble fraction above were denatured with 8 M urea, a strong denaturing agent, a refolding process was carried out to convert them to an active form as described below:
First, the purified recombinant proteins were subjected to dialysis using a refolding buffer (0.55 M Guanidine HCl, 0.88 M L-arginine, 50 mM Tris-HCl, 150 mM NaCl, 1 mM EDTA, 100 mM NDSB, 2 mM glutathione oxidized, and 1 mM glutathione reduced) at 4° C. for at least 72 hours to remove the denaturing agent. By doing so, the recombinant proteins were reactivated, namely, refolded. The refolding buffer in the container was changed every 24 hours. Thereafter, the activated recombinant proteins were dialyzed in a dialysis tubing (Snakeskin pleated, PIERCE) using a DMEM (Dulbecco's Modified Eagle Medium) containing 1% penicillin/streptomycin at 4° C. for 9 hours while stirring. The medium in the tubing was replaced every 3 hours. The cell permeable reprogramming transcription factor recombinant proteins thus refolded were used in the following experiments.
Human dermal fibroblast (HDF) cells were cultured to carry out induction of the reprogrammed stem cells. For an initial 7 days, the cells were cultured at 37° C. in a humidified atmosphere of 5% CO2 in an HDF medium (M106 (Cascade Biologic™)+LSGS (Cascade Biologic™)), and for a subsequent 14 days, the HDF medium was exchanged with a human embryonic stem cell medium (DMEM/F12 (HyClone®) supplemented with 20% KSR (GIBCO®), 2 mM L-glutamin (GIBCO®), 2 mM MEM Non Essential Amino Acid (GIBCO®), 0.1 mM β-mercaptoethanol (GIBCO®), and 0.1% penicillin/streptomycin (GIBCO®)). The cells were treated with the five cell permeable reprogramming transcription factor recombinant proteins at a concentration of 1 μM, and the cells treated with the MTD-free reprogramming transcription factor recombinant proteins at the same concentration were used as a control group. The treatment was conducted for 16 days, while the media and proteins were changed everyday. 16 days after the treatment, the total number of colonies formed was 23 and these colonies were used in examining the formation of reprogrammed stem cells.
In order to confirm that the colonies were reprogrammed stem cells, alkaline phosphatase (AP) staining was carried out (Sigma). Undifferentiated embryonic stem cells are characterized by a high expression level of alkaline phosphatase. Alkaline phosphatase (AP) is not only found in many organs in the body but also in the cytoplasm of an embryonic stem cell. The presence of AP can be detected by being stained in red. A capsule of Fast Blue RR salt in the alkaline phosphatase staining kit was dissolved in water to prepare a diazonium salt solution.
Naphthol AS-MX Phosphate Alkaline Solution was added to the diazonium salt solution to prepare an alkaline staining mixture. The cells in the 6-well plate were fixed with a fixative solution for about 30 seconds and rinsed gently with water for 45 seconds. With addition of the alkaline staining mixture, the cells were incubated at room temperature for 30 minutes while making sure the samples were not exposed to sunlight. Upon completion of the incubation, the cells were washed with water. Counterstaining was performed on these cells with a Mayer's Hematoxylin solution for 10 minutes and then rinsed with water for 2 minutes. Thereafter, staining was evaluated microscopically after covering the cells with a mounting solution.
As a result, as shown in
Colonies of the induced pluripotent stem cells were obtained by treating human dermal fibroblast cells (HDF) with the cell permeable recombinant proteins described in Example 3. The colonies were scrapped by using a capillary glass tube which had been bent into a ring shape by heating with an alcohol lamp. The successful removal of the colonies was confirmed under a stereomicroscope. The colonies were loaded for adhesion onto the 8-well chamber slides (chamber slide, NUNC) on which human dermal fibroblast cells were plated. After 1 day of stabilization, the medium was removed from the chamber slide and rinsed twice with PBS (phosphate buffered saline; WelGENE). The colonies were fixed in 2% paraformaldehyde (JUNSEI) for 20 minutes, washed twice with PBS again, and treated with 0.1% Triton X-100 for 5 minutes to make the cell membranes permeable. After rinsing with PBS twice, the cells were treated with 2% BSA (bovine serum albumin; Sigma)/PBS at room temperature for 1 hour to block non-specific protein binding. Thereafter, the colonies were treated with primary antibodies (diluted 1:1000 in 2% BSA/PBS) overnight in a refrigerator at 4° C. The primary antibodies used against Nanog and Oct4 were anti-Nanog antibody (abcam) and anti-Oct4 antibody (abcam), respectively. The colonies were washed twice with PBS upon completion of the reaction and then treated with secondary antibodies (diluted 1:500 with 2% BSA/PBS) at room temperature for 1 hour. The secondary Nanog and Oct4 antibodies used were Alexa Fluor® 488 goat anti-rabbit IgG (Alexa) and Alexa Fluor® 546 rabbit anti-goat IgG (Alexa), respectively. After rinsing the colonies with PBS three times, the nuclei were stained with 300 nM DAPI (4,6-diamidino-2-phenylindole, Sigma) at room temperature for 5 minutes in darkness. The colonies were washed with PBS three times. A mounting medium (VECTOR) was mounted thereon, and after 15 minutes, a laser scanning confocal microscopy with a Nomarski filter was used for observation. The original shape of cells and fluorescence were examined for Nanog excited at 488 nm and for Oct4 excited at 546 nm.
As a result, as shown in
The colonies that were confirmed to have an undifferentiated state by AP staining in Example 4 were treated with trypsin/EDTA (T/E, Invitrogen) at 37° C. for 3 minutes to disaggregate into single cells. The cells were washed with PBS supplemented with 0.1% BSA twice and treated with Fc Blocker CD16/32 (Fc Blocker, BD Pharmingen) for 10 minutes to block non-specific binding of the Fc region to the FcR on the cell surface. The treated cells were washed with PBS supplemented with 0.1% BSA twice, and stained on ice with TRA-1-60 (Tumor Rejection Antigen, BD bioscience), at a concentration of 1 μg/1×106 for 20 minutes, FTTC (fluorescein-5-isothiocyanate)-labeled SSEA-4 (Stage Specific Embryonic Antigen-4) antibody (BD bioscience), and PE (Phycoerythrin)-labeled SSEA-3 antibody (Stage Specific Embryonic Antigen-3) antibody (BD bioscience). Then, the cells were washed with PBS (Welgene) supplemented with 0.1% BSA twice. The prepared cells were analyzed with Calibur flow cytometry (Beckton-Dickinson, CA) using the CellQuest Pro cytometric analysis software (CellQuest Pro, BD).
As a result, as shown in
In
As a result, as shown in
RT-PCR was performed to confirm whether the induced reprogrammed stem cells described above showed an increased expression level of stem cell marker genes. RNAs were extracted from cells using a Trizol (iNTRON), and 5 μg of RNA was subjected to reverse transcription (Roche). A PCR was performed to examine the difference in expression levels of stem cell marker genes between the cDNAs from the group treated with the cell permeable reprogramming transcription factor recombinant proteins to induce reprogramming and those from the control group not treated with the recombinant proteins. A total of 14 genes were used as marker genes: Oct4, Nanog, LEFTB, Klf4, cMyc, EBAF, UTF1, CD9, ESG1, IFITM1, GAL, BRIX, and REX1. Further, for the control group, GAPDH was used as it is universally expressed in all types of cells. The PCR reaction was repeated 30-35 cycles at 95° C. for 1 minute, 55° C. for 1 minute, and 72° C. for 1 minute. Electrophoresis was carried out with the PCR product on an agarose gel.
As shown in
Human dermal fibroblast (HDF) cells were cultured to carry out induction of the reprogrammed stem cells. As shown in
Colonies of the induced pluripotent stem cell colony obtained by treating human dermal fibroblast cells (HDF) with the cell permeable recombinant proteins described in Example 7 were loaded for adhesion onto the 8-well chamber slides (NUNC) on which mouse dermal fibroblast cells were plated. After 1 day of stabilization, the medium was removed from the chamber slide and the slides were rinsed twice with PBS (WelGENE). The colonies were fixed in 2% paraformaldehyde (JUNSEI) for 20 minutes, washed twice with PBS again, and treated with 0.1% Triton X-100 for 5 minutes to make the cell membranes permeable. After rinsing with PBS twice, the colonies were treated with 2% BSA (Sigma)/PBS at room temperature for 1 hour to block non-specific protein binding.
Thereafter, the colonies were treated with primary antibodies (diluted 1:1,000 in 2% BSA/PBS) overnight in a refrigerator at 4° C. The primary antibodies used were anti-Nanog antibody (abcam) and anti-Oct4 antibody (abcam). The colony was washed twice with PBS upon completion of the reaction and then treated with secondary antibodies (diluted 1:500 with 2% BSA/PBS) at room temperature for 1 hour. The secondary antibodies used against Nanog and Oct4 were Alexa Fluor® 488 goat anti-rabbit IgG (Alexa) and Alexa Fluor® 546 rabbit anti-goat IgG (Alexa), respectively. After rinsing with PBS three times, the nuclei were stained with 300 nM DAPI (Sigma) at room temperature for 5 minutes in darkness. The colonies were washed with PBS three times. A mounting medium (VECTOR) was mounted on the slides, and after 15 minutes, a laser scanning confocal microscopy with a Nomarski filter was used for observation. The original shape of cells and fluorescence were examined for Nanog excited at 488 nm and for Oct4 excited at 546 nm.
As a result, as shown in
The colonies that were confirmed to have an undifferentiated state by AP staining in the Example above were treated with trypsin/EDTA (T/E, Invitrogen) at 37° C. for 3 minutes to disaggregate into single cells. The cells were washed with PBS supplemented with 0.1% BSA twice and treated with Fc Blocker CD16/32 (Fc Blocker, BD Pharmingen) for 10 minutes to block non-specific binding of the Fc region to the FcR on the cell surface. The treated cells were washed with PBS (phosphate buffered saline) supplemented with 0.1% BSA twice, and stained on ice with TRA-1-60 (Tumor Rejection Antigen, BD bioscience), at a concentration of 1 μg/1×106 for 20 minutes, FTTC (fluorescein-5-isothiocyanate)-labeled SSEA-4 (Stage Specific Embryonic Antigen-4) antibody (BD bioscience), and PE (Phycoerythrin)-labeled SSEA-3 antibody (Stage Specific Embryonic Antigen-3) antibody (BD bioscience). Then, the cells were washed with PBS (Welgene) supplemented with 0.1% BSA twice. The prepared cells were analyzed with Calibur flow cytometry (Beckton-Dickinson, CA) using the CellQuest Pro cytometric analysis software (CellQuest Pro, BD).
As a result, as shown in
In
As a result, as shown in
E. coli BL21 CodonPlus (DE3) was transformed with any of the following expression vectors, i.e., pET28a(+)-HNM10Nanog, pET28a(+)-HNM52Oct4, pET28a(+)-HNM181Sox2, pET28a(+)-HNM173Klf4, pET28a(+)-HNM145cMyc, and pET28a(+)-HNM132Lin28, in which a codon-optimized recombinant protein synthesized by Genscript was subcloned by a heat shock method, followed by incubation in an LB medium containing 50 μg/ml of kanamycin. Thereafter, the transformant was inoculated in 25 ml of an LB medium and cultured at 37° C. overnight. Then, the culture was inoculated again in 1 l of an LB medium and incubated at 37° C. until the optical density OD600 reached 0.6 to 0.7. To the culture was added 0.65 mM IPTG as a protein expression inducer, and the culture was incubated at 37° C. for additional 3 hours. This culture was centrifuged at 4° C. at a speed of 4,000×g for 20 minutes to remove the supernatant and the bacterial cells were harvested. The harvested cells were suspended in a lysis buffer (100 mM NaH2PO4, 10 mM Tris-HCl, 8 M urea, pH 8.0) and the suspension was subjected to sonication to disrupt the cells. The cell lysates were centrifuged at a speed of 14,000×g for 15 minutes to separate the insoluble fraction from the soluble fraction. The soluble and insoluble fractions thus obtained were loaded on an SDS-PAGE gel separately to analyze the protein expression profile and the degree of expression.
As a result, as shown in
The cell permeable reprogramming transcription factor recombinant proteins according to the present invention can introduce reprogramming transcription factors into a nucleus of a cell with high efficiency. The recombinant protein of the present invention can solve the problems of prior art caused by insertion of exogenous genes and is useful in the establishment of induced pluripotent stem cells with high efficiency.
| Filing Document | Filing Date | Country | Kind | 371c Date |
|---|---|---|---|---|
| PCT/KR2010/001559 | 3/12/2010 | WO | 00 | 10/17/2011 |
| Number | Date | Country | |
|---|---|---|---|
| 61159461 | Mar 2009 | US |
