The present invention relates generally to a method for detecting and quantifying bacterial endotoxin (lipopolysaccharide) using a chemically modified antibiotic. More particularly, the present invention is a method, which uses fluorescently labeled Polymyxin in a fluorescence polarization assay for bacterial endotoxin.
The present invention comprises a chemically modified antibiotic with high affinity to the endotoxin (lipopolysaccharide) component of certain bacteria. In particular, the preferred antibiotic includes all members of the class of antibiotic known as Polymyxin, which include Polymyxin B, D, E, F, Colistin and others. These antibiotics are peptides generally containing ten (10) amino acids and an alcohol. The various individual polymyxins contain different amino acid substitutions and different alcohols in certain locations. All classes however have a high binding affinity for endotoxin. For an endotoxin assay, a polymyxin is derivatized by the chemical addition of a fluorescent molecule. It is therefore an object of the present invention to introduce one or more fluorescent molecules to polymyxin by chemical addition in order to make polymyxin fluoresce without compromising endotoxin-binding affinity. Examples of fluorescent molecules used in this invention include, but are not limited to, fluorescein, 5-carboxy fluorescein, boron dipyrromethene, and tetramethylrhodamine.
When a fluorescent molecule is attached to polymyxin in a certain manner, the polymyxin retains its high affinity to bind endotoxin but also becomes visible when viewed with fluorescent light in a fluorometer. The assay, which comprises this invention, takes advantage of the polarization property of fluorescent molecules. That is when appropriate molecules are excited by a defined wavelength of light; the molecule is activated and emits light at a second defined wavelength (fluorescence). Such fluorescent molecules have the property of fluorescing in the 400-700 nm range. Further, if the excited light is polarized and the resulting emitted light is measured in the horizontal and vertical planes, a measure of the rate of optical rotation can be obtained (fluorescence polarization). The rate of optical rotation is inversely proportional to molecular volume, i.e. a smaller molecule will rotate faster than a larger one. Thus, in this invention, a relatively small molecule in solution, i.e. a fluorescently labeled polymyxin, will have a high rate of rotation. When this molecule binds to a relatively large molecule in solution, a namely bacterial endotoxin, the rotation will slow. Instruments exist to precisely measure fluorescence polarization.
All illustrations of the drawings are for the purpose of describing selected versions of the present invention and are not intended to limit the scope of the present invention.
This invention comprises a chemically modified antibiotic with high and specific affinity to the endotoxin (lipopolysaccharide) component of certain bacteria. In particular, the preferred antibiotic includes all members of the class of antibiotics known as polymyxin, which include polymyxin B1, B2, D2, E1, E2, F, M, Colistin and modifications thereof. The chemical structure of the polymyxin class is shown in
The present invention includes methods of detecting and quantifying bacterial endotoxin by using a tracer or a fluorescently labeled polymyxin wherein fluorescent tags include 4,4-difluoro-5,7-dimethyl-4-bora-3a,4a-diaza-s-indacene-3-pentanoic acid, succinimidyl ester (bodipy); 5/6-carboxyfluorescein succinimidyl ester (NHS-fluorescein); 5(6)-fluorescein isothiocyanate (FITC); 5-carboxy fluorescein; boron dipyrromethene; or tetramethyl rhodamine. The methods comprise steps in derivatizing polymyxin with fluorescent tag bodipy, NHS-fluorescein or FITC are specified hereinafter. The method of derivation varies depending on the fluorescent tag employed. The methods comprise mixing the fluorescently labeled polymyxin antibiotic with a bacterial endotoxin sample. Moreover, the methods comprise steps of measuring fluorescence of fluorescently labeled polymyxin antibiotic and the bacterial endotoxin by using a fluorescent polarization endotoxin assay. The generalized method of detecting endotoxin using fluorescence polarization technique is illustrated in
In the preferred method of derivatizing polymyxin with fluorescent tag bodipy, a preferred form of bodipy named water soluble succinyl ester of bodipy or 4,4-difluoro-5,7-dimethyl-4-bora-3a,4a-diaza-s-indacene-3-propionic acid, sulfosuccinimidyl ester is used. The method of preparing fluorescent tracer with bodipy is initiated by dissolving approximately 10 mg of polymyxin in 1 mL of 0.1M sodium bicarbonate buffer to create a polymyxin solution. The polymyxin solution is completely mixed and dissolved with the aid of a vortex. The polymyxin solution is then set aside. Next, a bodipy solution is created by dissolving 10 mg of bodipy in 1.0 mL of dimethylformamide (DMF) or dimethylsulfoxide (DMSO). The dissolution of 10 mg of bodipy in DMF or DMSO is preferably aided by utilization of a vortex. The polymyxin solution is mixed with the bodipy solution to initiate conjugation between the antibiotic polymyxin and the fluorescent tag bodipy. Then, 300-400 μL of the bodipy solution is added to the polymyxin solution while the polymyxin solution is being vortexed to create a bodipy-polymyxin solution. Varying the amount of bodipy solution added will result in more or less amino groups being labeled. Vortexing allows the polymyxin solution and the bodipy solution to mix well so high amount of byproducts may be yielded. After vortexing, the bodipy-polymyxin solution is incubated and continuously stirred for one hour at room temperature. Then, the bodipy-polymyxin solution is dialyzed in order for the unconjugated bodipy to be removed. The bodipy-polymyxin solution is then stored either as a refrigerated liquid or in a powder form. If stored as a refrigerated liquid, sodium azide is added as a preservative to the bodipy-polymyxin solution in order to prevent microbial contamination. In order to transform the bodipy-polymyxin solution into a powder form, lyophilizing is utilized. Lyophilizing or freeze-drying is a dehydration process used to preserve a perishable material or make the material more convenient for transport. Lyophilizing works by freezing the material and reducing the surrounding pressure to allow frozen water in material to transform directly from solid phase to gas phase. As a powder form, the bodipy-polymyxin solution may be reconstituted with an appropriate amount of water. The method of preparing fluorescent tracer with bodipy is illustrated in
The method of preparing the fluorescent tracer with NHS-fluorescein is initiated by dissolving approximately 10 mg of polymyxin in 1 mL of 0.1M sodium bicarbonate buffer in order to create a polymyxin solution. Then, a NHS-fluorescein solution is created by reconstituting 1 mg of powder NHS-fluorescein with 100 μL of DMF or DMSO. The act of weighing and transferring the powder NHS-fluorescein into DMF or DMSO is done immediately to protect NHS-fluorescein from moisture since powder NHS-fluorescein is hygroscopic and its ability to form derivatives degrades rapidly in the presence of moisture. Subsequently, the NHS-fluorescein solution is mixed with the polymyxin solution in order to create a NHS-fluorescein polymyxin solution. The amount of NHS-fluorescein solution to use for each reaction depends on the amount of the polymyxin solution to be labeled. By using the appropriate molar ratio of labeling reagent to polymyxin, the extent of conjugation can be controlled. When conjugating polymyxin with NHS-fluorescein, a 15-to-20-fold molar excess of the fluorescein is optimal; however, this ratio may be varied to alter the degree of labeling. The molar concentration of the NHS-fluorescein solution to be added to the polymyxin solution is at least 15 times the molar concentration of the polymyxin solution. The molar excess may be calculated by using the following equation:
molar excess=mL polymyxin*mg polymyxin*mmol polymyxin*15 mmol NHS-fluorescein
where the molecular weight of NHS-fluorescein is 473.4 and the molecular weight of polymyxin depends on the type of polymyxin used. In the preferred method, polymyxin B was used, therefore 1301.56 was used as the molecular weight for polymyxin. The NHS-fluorescein polymyxin solution is incubated at room temperature for one hour or on ice for two hours. Then, non-reacted NHS-fluorescein in the NHS-fluorescein polymyxin solution is removed by dialysis or gel filtration. The NHS-fluorescein polymyxin solution is then stored at 4 degrees Celsius until the NHS-fluorescein polymyxin solution is ready for use. Similarly to the bodipy-polymyxin solution, a final concentration of 0.1% of sodium azide is added as a preservative to the NHS-fluorescein polymyxin solution to prevent microbial contamination in the NHS-fluorescein polymyxin solution. The method of preparing the fluorescent tracer NHS-fluorescein includes utilizing 50 mM borate with a pH 8.5 as the optimal labeling buffer. Other non-amine-containing buffers include buffers with pH between 7-9 such as 20 mM sodium phosphate, 0.15 M NaCl, 20 mM HEPES and 100 mM carbonate/bicarbonate may be used. The method of preparing the fluorescent tracer with NHS-fluorescein is illustrated in
The method of preparing the fluorescent tracer with FITC is initiated by dissolving 1 mg of polymyxin in 0.5 mL of 50 mM borate buffer with a pH 8.5 in order to create a polymyxin solution. The fluorescent tag FITC is dissolved in DMF at 10 mg/mL and mixed to complete dissolution to create a FITC solution. The FITC solution is added to the polymyxin solution with 15-to-20-fold molar excess of the FITC solution in a FITC polymyxin solution. The molar excess may be calculated by using the aforementioned equation used in calculating the molar excess of the NHS-fluorescein with a molecular weight 389.38 for FITC. The FITC polymyxin solution is thoroughly mixed. Subsequently, the FITC polymyxin solution is incubated for one hour at room temperature in dark ambience. The excess FITC is removed from the FITC polymyxin solution by hydrolyzing the FITC polymyxin solution through gel filtration, dialysis, or with a dye removal column. Consequently, the FITC polymyxin solution is stored at 4 degrees Celsius until the FITC polymyxin solution is ready for use. A final concentration of 0.1% of sodium azide is added as a preservative to the FITC polymyxin solution to prevent microbial contamination in the FITC polymyxin solution. The method of preparing the fluorescent tracer with FITC is illustrated in
The method of measuring fluorescence of the fluorescently labeled polymyxin antibiotic and bacterial endotoxin by using a fluorescent polarization endotoxin assay is initiated by diluting endotoxin in endotoxin-free distilled water to cover a range of concentrations from 0 Endotoxin Units (EU)/mL to 100 EU/mL in order to create a plurality of endotoxin samples. The plurality of endotoxin samples is evenly distributed into each of a plurality of cuvettes. Each of the plurality of cuvettes contains 3 mL of the plurality of endotoxin samples. Subsequently, 10 μL to 100 μL of fluorescently labeled polymyxin is added into each of the plurality of cuvettes. The concentration of tracer or fluorescently labeled polymyxin to add to a 3 mL volume of endotoxin sample in each of the plurality of cuvettes is calculated so that the final number of photons displayed in the parallel channel of the fluorescence polarization meter ranges from 6-8 millions. Consequently, the volume of tracer to add to 3 mL volume should be adjusted to range from 10 μL to a maximum of 100 μL. In order to measure accurate fluorescent signals, a noise signal is measured first. The noise signal may be obtained from measuring an endotoxin sample with water or buffer without the labeled polymyxin antibiotic using a fluorescence polarization instrument. The method to use the fluorescence polarization instrument is described in detail in U.S. Pat. No. 4,429,230. A fluorescent signal may be obtained from measuring a sample containing the fluorescently-labeled polymyxin antibiotic or tracer plus endotoxin in the fluorescence polarization instrument. Subsequently, the noise signal is subtracted from the fluorescent signal to obtain a plurality of fluorescence results or net photons.
The net photons obtained in each channel in the instrument are used to calculate polarization (mP) as illustrated in
net photons of sample=(2*G factor*(H) net perpendicular)+(V) net parallel
Polarization or mP of the sample is calculated by using the following formula:
mP=[((V) net parallel−(G factor*(H) net perpendicular))/((V) net parallel+(G factor*(H) net perpendicular))]*(1000)
Additionally, in order to find the net photons of a blank sample, the summation of (V) parallel or the sum of photons from sample without tracer in the vertical plane and (H) parallel or the sum of the photons from sample without tracer in horizontal plane is carried out as follows:
Photons of blank sample=(2*G factor*(H) perpendicular)+(V) parallel
A standard curve is generated by measuring the mP of a plurality of endotoxin samples with the following known concentrations 0, 1, 2, 5, 10, 25, 50, 100 EU/mL in pyrogen-free water or buffer. An example of a lower end standard curve is shown Table 1 below:
The standard curve generated by the data is shown in
correction factor=(temperature of sensor ° C.−temperature of fluid sample ° C.)*0.025
temperature corrected mP=(1+correction factor)*mP from step 2
corrected EU/mL=[(temperature corrected mP−y intercept of standard curve)/(slope of standard curve)]*(1000/#μL of sample)
Fluorescence results can also be displayed as PASS/FAIL depending on the cutoff for any given application. Generally, an mP increase from the “zero” point of greater than 10%-20% would indicate positive. In this system, such an increase would indicate an endotoxin concentration of approximately 0.25 EU. The method of performing the fluorescent polarization endotoxin assay is illustrated in
Although the invention has been explained in relation to its preferred embodiment, it is to be understood that many other possible modifications and variations can be made without departing from the spirit and scope of the invention as hereinafter claimed.
The current application claims a priority to the U.S. Provisional Patent application Ser. No. 61/470,736 filed on Apr. 1, 2011. The current application filed in U.S. Apr. 2, 2012 while Apr. 1, 2012 was on a weekend.
Number | Date | Country | |
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61470736 | Apr 2011 | US |