Patent Application
20190010227
The present invention relates to humanization of anti-Epidermal Growth Factor Receptor (EGFR) antibodies and applications of using the same for treating cancers and other human diseases.
EGF receptor belongs to a family of erbB genes and its amplification and overexpression have been observed in a high percentage of primary human carcinomas of epithelial origin including cancers of the breast, colon, lung, head and neck, kidney, prostate and bladder, and played very important roles in cancer progression. It has been shown that anti-EGFR antibodies can block the binding of EGF to EGFR and the signal transduction in the cells, inhibit tumor progression in cancer patients. Several monoclonal anti-EGFR antibodies have proven effective in treatment of human patients in clinic. In 2005, Erbitux, a humanized mouse anti-EGFR monoclonal antibody was launched as the therapy for head and neck cancer by ImClone. In 2009, another humanized anti-EGFR monoclonal antibody was launched in China for the same indication by a Chinese Biopharmaceutical.
This invention is about the humanization of another mouse anti-EGFR monoclonal antibody, designed as clone LA22, which binds to different epitopes from the one recognized by Erbitux. It has been reported previously that once binds to the EGFR on the tumor cell surface, in the absence or presence of EGF, LA22 will internalize rather quickly, and can be an ideal candidate for antibody drug conjugate.
The present invention provides the humanized anti-EGFR antibodies and methods of using the same for suppressing the growth of tumor cells and for treating cancers of epithelial origin. In one aspect, the present invention features EGFR-binding molecules and their DNA and amino acid sequences. Each molecule comprises the CDRs from mouse anti-EGFR monoclonal antibody LA22 and the FRs and Fcs from different human origins. In one embodiment, an EGFR-binding molecule of the present invention is a monoclonal antibody conjugated with a cytotoxic agent.
The present invention features EGFR-binding molecules are humanized anti-EGFR monoclonal antibodies with the amino acid sequences from the variable regions (Fv) of mouse anti-EGFR LA22 antibody, and the constant regions (Fc) of human IgGs. The Fv amino acid sequence of heavy chain of mouse monoclonal antibody LA22 is shown in SEQ ID NO.1 and the Fv amino acid sequence of light chain of mouse monoclonal antibody LA22 is shown in SEQ ID NO.2. The humanization is using the human FRs to replace the mouse FRs.
The present invention also provides one example of using the Fc amino acid sequence of human IgG1 to replace the Fc amino acid sequence of mouse LA22 first, then to modify the FRs amino acid sequences of mouse LA22 with various human FRs amino acid sequences to obtain humanized antibodies with good affinity to EGFR and high biological activity.
The present invention features humanized anti-EGFR antibodies with one of the amino acid sequences of heavy chains shown in SEQ ID NO. 7˜11, and one of the amino acid sequences of light chains shown in SEQ ID NO. 12˜14.
The present invention features humanized anti-EGFR antibodies with any one of the amino acid sequences of heavy chains shown in SEQ ID NO. 7˜11, and the amino acid sequences of light chain shown in SEQ ID NO. 14 (light chain h2).
The present invention features humanized anti-EGFR antibodies with the amino acid sequences of heavy chains shown in SEQ ID NO. 10 (heavy chain H3), and any of the amino acid sequences of light chains shown in SEQ ID NO. 12˜14.
Furthermore, the present invention features humanized anti-EGFR antibody with the amino acid sequences of heavy chain shown in SEQ ID NO. 10 (heavy chain H3), and the amino acid sequence of light chain shown in SEQ ID NO. 14 (light chain h2).
The present invention features humanized anti-EGFR antibodies with one of the DNA sequences of heavy chains shown in SEQ ID NO.15˜19, and one of the DNA sequences of light chains shown in SEQ ID NO. 20˜22.
Furthermore, the present invention features humanized anti-EGFR antibody with the DNA sequence of heavy chain shown in SEQ ID NO. 18 (heavy chain H3), and the DNA sequence of light chain shown in SEQ ID NO. 22 (light chain h2).
The present invention features the expression plasmid containing the humanized anti-EGFR antibody sequences.
The present invention also covers the plasmid, the host cells containing the humanized anti-EGFR antibody sequences.
The invention also provides humanized anti-EGFR antibodies for treatment of human diseases targeting EGFR.
The EGFR-binding molecules or antibodies of the present invention can be used to kill or inhibit the growth of cancer cells. These methods comprise contacting cancer cells with an EGFR-binding molecule or antibody of the present invention.
In addition, the EGFR-binding molecules or antibodies of the present invention can be used to treat cancers. These methods comprise administrating an effective amount of an EGFR-binding molecule or antibody of the present invention to a subject in need thereof. Cancers or cancer cells amenable to the present invention include those of epithelial origin.
Furthermore, the present invention also features pharmaceutical compositions comprising an EGFR-binding molecule or antibody of the present invention.
The present invention provides the primer sequences for light and heavy chains as follow:
The present invention provides the method of humanization of anti-EGFR monoclonal antibody, including:
Total RNA was extracted from hybridoma cells of mouse anti-EGFR monoclonal antibody LA22, then reverse transcribed into the cDNA using VH1FOR and VK1FOR as the primers for variable regions of heavy chain and light chain to obtain the cDNAs library. Use this cDNA library as the template for PCR amplification with the primers VH1FOR and VH1BACK for heavy chain variable region of mouse monoclonal antibody LA22, and primers VK1FOR and VK1BACK for the light chain variable region. Purify the PCR products of interested, perform subcloning and transformed into competent cells, then screening positive clones by DNA sequencing.
Once the variable region sequences confirmed, chemically synthesize both the variable sequences with artificially added restriction enzyme sites (Kpn I and Xho I for light chain variable region, KpnI and AgeI for heavy chain variable region), ligate to vector pJH16-H39E3.L1kappa and pJH16 to obtain the expression plasmids for heavy chain and light chain chimeric antibody. Screen for positive clones after transformation by sequencing and restriction enzyme digestions.
Using the known human antibody frame works (FRs) as the replacing sequences for the mouse LA22's, together with 3D modeling and immunogenicity prediction softwares, we designed 5 humanized heavy chain variable region sequences (amino acid sequences are shown in SEQ ID NO.7˜11, the nucleotide sequence as shown in SEQ ID NO.15˜19) and 3 humanized light chain variable region sequences (amino acid sequences are shown in SEQ ID NO.12˜14, the nucleotide sequence as shown in SEQ ID NO.20 to 22).
Chemically synthesize both the rariable sequences with artificially added restriction enzyme sites (Kpn I and Xho I for light chain variable region, KpnI and AgeI for heavy chain variable region), ligate to vector pJH16-H39E3.L1kappa and pJH16 to obtain the expression plasmids for heavy chain and light chain humanized antibodies. Screen for positive clones after transformation by sequencing and restriction enzyme digestions.
Co-transfection of the heavy and light chain chimeric antibody expression plasmids generated the mouse/human IgG1 chimeric anti-EGFR monoclonal antibody. Co-transfection of different combinations of the chimeric/humanized light and heavy chain expression plasmids produced 30 different humanized anti-EGFR monoclonal antibodies with different expression levels and affinities for EGFR.
The invention presents the humanized anti-EGFR antibodies which bind to different epitope and inhibit the tumor formation in a different way than Erbitux. In combination with Ervitux, the new humanized antiEGFR antibodies may increase the efficacy to treat cancers. Most importantly, once bound to the surface EGFR, these new anti-EGFR antibodies internalize rather quickly, which made them ideal candidate for antibody drug conjugation and other biotherapy. The invention also features method of humanization which leads to 90% of the amino acid sequences are human sequence, and significantly reduce the risk of human anti-mouse immunogenicity. The present invention also demonstrated that the humanized anti-EGFR antibodies have the affinity to EGFR in the range of 2.3 nM, which is very similar to the mouse anti-EGFR monoclonal antibody LA22.
The drawings are provided for illustration, not limitation.
It should be understood that the above-described embodiments and the following examples are given by way of illustration, not limitation. Various changes and modifications within the scope of the present invention will become apparent to those skilled in the art from the present description.
Unless specified, all the techniques used are common practices and can be performed by skilled personnel. All of the materials and reagents can be purchased commercially.
Monoclonal antibody LA22 is described in U.S. Pat. No. 5,459,061. The hybridoma LA22 is deposited at ATCC. We used a 5′RACE (Rapid amplification of cDNA ends) method to obtain the DNA sequences of the variable regions of the light and heavy chains of anti-EGFR mouse mAb LA22. The primers used in the reactions as shown below:
First, VH1FOR and VK1FOR were used to obtain the cDNA library from LA22, then VH1FOR+VH1BACK were used as the pair to PCR clone out the sequence of the variable region of the heavy chain, and VK1FOR+VK1BACK for the light chain. The PCR products were subject to DNA sequencing to obtain the gene sequences.
Briefly, the total RNA from 1×107 LA22 hybridoma cells was extracted using Qiagen RNeasykit. Following the instruction of 5′-RACEkit from Transgen, VH1FOR and VK1FOR were used to obtain the cDNA library. The reaction was carried out first at 42° C., 30 min, then 85° C. for 5 min. VH1FOR+VH1BACK were used as the pair to PCR clone out the sequence of the variable region of the heavy chain, and VK1FOR+VK1BACK for the light chain. 37 cycles of PCR reactions were carried out. PCR products from different reaction were separated by agarose gel and the bands at the expected sizes (320 bp for light chain and 360 bp for heavy chain) were cut-out, extracted and cloned into pEASY-T1 (Transgen) vector. After the transfection, the DH5α E. Coli cells were seeded on IPTGIX-gal plates, 8 clones from each transfection were picked, expanded and sent out to GeneWiz for DNA sequencing.
The VH cDNA sequence of mouse LA22 is shown in SEQ ID NO.3, and VL cDNA in SEQ ID NO.4. The translated amino acid sequences for VH and VL of mouse LA22 are shown in SEQ ID NO.1-2.
According the nucleotide sequences of the monoclonal antibody LA22 heavy and light chain variable regions, the restriction sites of Kpn I and Xho I for the light chain and Kpn I with Age I for the heavy chain were added in the gene synthesis. The genes were inserted into pUC57 vectors containing constant regions of light chain kappa and heavy chain IgG1 respectively by GeneWiz. The plasmids and the expression vectors (pJH16-H39E3.L1kappa and pJH16) were subjected to enzyme digestions at 37 C overnight. Results of digestions of pUC57-LA22 light, heavy chain, and the expression vectors are shown in
The VL and VH of anti-EGFR mouse monoclonal antibody LA22 were humanized as shown below.
The CDRs of mouse monoclonal antibody were grafted onto human antibody variable regions to replace the CDRs of human antibodies, so the humanized antibodies will keep the antigen-binding specificity of mouse monoclonal antibody, while reducing its heterologous to human. Principle of the method is that the mouse antibody FR(s) was only replaced with human FR(s) at the regions with clear differences, using the amino acid similar with the human antibody surface residues for replacement on the basis of maintaining the activity of the antibody and reducing the heterologous. In addition, the replaced section should be limited and try to avoid the replacements which have impact on side chain size, charge, hydrophobicity, or may form hydrogen bonds thus affecting the antibody complementarity determining region (CDR) residues conformation.
This invention provides 5 humanized heavy chains designed as HO-LA22, H1-LA22, H2-LA22, H3-LA22, H4-LA22. The amino acid sequences are shown in SEQ ID NO.7˜11, the nucleotide sequences are shown in SEQ ID NO.15˜19. The invention also features 3 humanization light chains designed as h0-LA22, h1-LA22, h2-LA22. The amino acid sequences are shown in SEQ ID NO.12˜14, the nucleotide sequence are shown in SEQ ID NO.20˜22.
Add the restriction sites of KpnI and XhoI to the 3 humanized light chain variable region sequences obtained in Example 3, and the restriction sites of KpnI and AgeI to the 5 humanized heavy chain variable region sequences. All the light and heavy chain variable region sequences were inserted into the vector pUC57. Cut the heavy chain variable region sequences from the vector pUC57 and inserted into the corresponding sites of the expression vector pJH16 using the restriction sites of KpnI and AgeI. Cut the light chain variable region sequences from the vector pUC57 and inserted into the corresponding sites of the expression vector pJH16-H39E3.L1kappa using the restriction sites of KpnI and XhoI, to obtain the humanized recombinant monoclonal antibody heavy and light chain expression plasmids. The results of the light chain and heavy chain digestion are shown in
According the nucleotide sequences of the humanized monoclonal antibody LA22 heavy and light chain variable regions, the restriction sites of Kpn I and Xho I for the light chains and Kpn I with Age I for the heavy chains were added in the gene synthesis. The genes were inserted into pUC57 vectors containing constant regions of light chain kappa and heavy chain IgG1 respectively by GeneWiz. The plasmids and the expression vectors (pJH16-H39E3.L1kappa and pJH16) were subjected to enzyme digestions at 37 C overnight. Results of digestions of pUC57-LA22 light, heavy chain, and the expression vectors are shown in
Cut the gels containing the fragments of ho/h1/h2-LA22 with the expected size of 430 bp in lane 1˜4 shown in
The pJH16-LA22 heavy chain and light chain chimeric antibody expression vector constructed in Example 2 and the pJH16-LA22 heavy chain and light chain humanized antibody expression vector constructed in Example 4 were transformed into E. coli DH5a and cultured in 100 ml LB medium following a conventional method. Plasmid DNA were harvested from the cultures using a Qiagen Plasmid DNA UltraPure Purification kit. The purified plasmid DNAs were co-transfected into CHO or 293F cells (purchased from Invitrogen) using the Invitrogen liposome transfection kit, following the manufacturer's operating instructions.
A total of 20 different combinations of light and heavy chain plasmids were co-transfected into 293F cells. 3 days later, the culture supernatant was harvested and added to the 96 well plates pre-coated with EGFR. Preliminary evaluated the EGFR binding activity of antibody secreted using indirect ELISA (Table 1).
Stable Expression
CHO cells was electro-transfected and selected under MTX pressure (purchased from Sigma) in the selective Opti-CHO medium (purchased from Invitrogen). Three selecting gradients were set as 50 nM, 100 nM and 250 nM. After each round, the expression levels of IgG in the culture supernatants on Day 7 were examined using sandwich ELISA method. When the process was complete, limiting dilution was performed for monoclonal cloning. Cells were seeded at 96-well plate and cultured at 37° C. 5% CO2. 14 days later, 50 μl of supernatant was collected for antibody production testing using sandwich ELISA method. Clones with better expressing results were selected for further expansion. The results showed that the combinations of different heavy chains with light chain h2 and stable expression was observed but with different levels (Table 2).
Antibody purification: Used a Protein A affinity chromatography column to purify the culture supernatant of the five stable cell lines and obtained the present invention of humanized monoclonal antibodies. The results of SDS-PAGE show that the product purity is greater than 90% (
1. Biacore assay. To test the affinity between human epidermal factor receptor (EGFR) and the present invention of humanized anti-EGFR antibody using BIAcore system which is based on the surface plasmon resonance technique, the chip was coated with ECD of rec. EGFR. As shown in Table 3, the binding ability of mLA22 is 2 nM, and hLA22 is 2.3 nM, both reached 10−9, indicating that some of the humanized anti-EGFR antibodies in the present invention have the same affinities as the mouse anti-EGFR antibody.
2. Flow cytometric analysis. A431 cells, a human epidermoid carcinoma cell line (ATCC No. CRL-1551), were incubated with 20 μg/ml of mLA22 or hLA22 at 4° C. 60 minutes later, FITC-labeled anti-mouse or anti-human secondary antibody (Jackson Lab) were added and incubated at 4° C. for 60 min, and then subjected to flow cytometry. The results showed that mLA22 and hLA22 (the combination of light chain h2 and heavy chain H3) bind to the EGFR on live A431 cell surface in a very similar intensities (
3. Cell ELISA assay A431 cells were seeded at 20,000 cells/well of 96-well plate in DMEM-10% FBS and incubated at 37° C. 5% CO2. 24 hours later, discard the medium. After two washes with PBS and blocking with 5% skim-milk/PBS for 1 h, wells were incubated with different concentration of mLA22 and hLA22 in 5% skim-milk-PBS for another one hour. After two washes with PBS, wells were then incubated with HRP-conjugated goat anti-mouse IgG secondary antibodies or HRP-conjugated goat anti-human IgG secondary antibodies (Jackson Lab) in 5% skim-milk-PBS for 1 h at room temperature. After washes with PBS, HRP substrate 3, 3′, 5, 5′-tetramethylbenzidine (TMB) solution was added. The reaction was stopped with stop solution (0.1M H2504) and absorbance was measured at 450 nm with a microplate reader. The results showed that mLA22 and hLA22 bind to the EGFR expressed on A431 cell surface and saturated at 4 μg/ml, indicating that the present invention of humanized antibody hLA22 h2H3 has the same affinity as mLA22 (
4. Tumor cell proliferation inhibition test A431 cells were seeded at 20,000 cells/well of 96-well plate in DMEM-10% FBS and incubated at 37° C. 5% CO2. 4 hours later, discard the medium and added 100 μl/well of different concentration of mLA22 and hLA22 in serum free DMEM at 37° C. 5% CO2. Four days later, the cell numbers in each well were determined by MTT assay.
Tumor cell growth inhibition rate (%)=(DMEM containing no antibody treated cells number−antibody treated cells number)÷DMEM containing no antibody treated cells number×100%
As shown in
The invention features humanized anti-EGFR antibodies which have 90% of the amino acid sequences from human, with affinity to EGFR in the range of 2.3 nM, which is very similar to the mouse anti-EGFR monoclonal antibody. Once bound to the surface EGFR, these new anti-EGFR antibodies internalize rather quickly, which made them ideal candidate for antibody drug conjugation and other biotherapy. Humanization will significantly reduce the risk of human anti-mouse immunogenicity, extend its half-life and increase the efficacy of the biological drugs.
| Number | Date | Country | Kind |
|---|---|---|---|
| 201410083224.3 | Mar 2014 | CN | national |
| Filing Document | Filing Date | Country | Kind |
|---|---|---|---|
| PCT/CN2015/131855 | 3/6/2015 | WO | 00 |
