Inhibition of retrovirus infection

Abstract

Methods and pharmaceutical compositions are provided to prevent retroviral infections of host cells. More particularly, the invention relates to prevention of HIV infection of human cells by serine leukocyte protease inhibitor (SLPI).

Description

This invention relates to the field of the treatment of retroviral infections and, more particularly, to the treatment of human immunodeficiency virus (HIV) infection and associated disease, including acquired immune deficiency syndrome (AIDS).

BACKGROUND OF THE INVENTION

Retroviral agents have been implicated in a number of diseases, including cancer, autoimmune disease and AIDS. Human immunodeficiency virus (HIV) infection causes chronic progressive depletion of CD4.sup.+ T lymphocytes (CD4.sup.+ cells) and infection of macrophages, resulting in acquired immune deficiency syndrome. Currently zidovudine (AZT), an analogue of thymidine, is the primary anti-viral drug used in the treatment of HIV infection, although two other agents with a similar mechanism of action, dideoxyinosine (ddI) and dideoxycytosine (ddC), are also used. Colley, T. P. et al., New Engl. J. Med. (1990) 322:1340-45; Fischl, M. A., et al., New Engl. J. Med. (1987) 317:185-91. These agents are effective in inhibiting viral replication, and can stabilize the CD4.sup.+ cell levels, but they are unable to eliminate one of the major viral reservoirs, HIV infected macrophages. Gartner, S., et al., Science (1986) 233:215-19. Severe toxicity, particularly involving HIV host bone marrow is also associated with higher doses of AZT treatment, and the beneficial effects of the drug in AIDS patients diminishes after prolonged therapy; HIV strains resistant to AZT also have been observed in treated patients. These findings have prompted the search for alternative drugs for the treatment of HIV infection, particularly agents with a different mechanism of action.

Human immunodeficiency virus type 1 (HIV-1), a retrovirus, is the etiologic cause of AIDS. The HIV-1 envelope glycoprotein, gp120, specifically binds to the CD4 receptor on T lymphocytes and on monocytes and macrophages. Although infection of T lymphocytes requires cellular proliferation and DNA synthesis, productive infection of monocytes can occur independently of cellular DNA synthesis (Weinberg, J. B., et al,. (1991) J. Exp. Med. 174:1477-82). When HIV-1 infects activated CD4.sup.+ lymphocytes, it is lethal, but infected monocytes are relatively resistant to destruction by the virus. Consequently, these cells, once infected with HIV-1, serve as long-lived reservoirs of the virus. Not only are these cells a source of replicating virus, but their virally-mediated dysfunction may contribute to increased susceptibility to opportunistic infections that are the hallmark of AIDS.

Because monocyte-macrophages serve as reservoirs for HIV-1, selective targeting of this population, in addition to T lymphocytes, warrants further consideration (Finberg, R. W., et al., Science 252:1703-05, 1991. Early reports from Fox's group (JADA 118:709-711, 1989) indicated that a component of human saliva blocks HIV replication. More recently, Hattori (FEBS Lett. 248:48-52, 1989) showed that an inhibitor of tryptase (a trypsin-like enzyme) can inhibit syncytia formation of T-cells induced by HIV.

In exploring various potential modulators of HIV-1 infection, we have recently identified an endogenous source of inhibitory activity which retards HIV-1 infection and/or replication.

The factor responsible for the antiviral activity is serine leukocyte protease inhibitor (SLPI). SLPI is a potent inhibitor of human leukocyte elastase, chymotrypsin, cathepsin G, and of human trypsin, and has been purified from parotid secretions (Thompson, R. C. and K. Ohlsson, (1986) Proc. Natl. Acad. Sci. USA, 83:6692-96; and U.S. Pat. No. 4,760,130, both of which are incorporated herein by reference). SLPI is now available through production by recombinant DNA techniques; U.S. patent application No. 07/712,354, filed Jun. 7, 1991, PCT application No. W086/03519, filed Dec. 4, 1985, and European patent application 85 905 953.7, filed Dec. 4, 1985, each of which are incorporated herein by reference).

The ability of SLPI and/or its derivatives and analogs to block HIV-1 infection and/or replication can provide the basis for therapeutic intervention in HIV-1 infection.

SUMMARY OF THE INVENTION

The present invention provides novel methods for preventing or treating retroviral infections of mammalian cells, particularly preventing infection of human cells with human immunodeficiency virus (HIV) and associated diseases, including acquired immune deficiency syndrome (AIDS).

Included within the scope of this invention are pharmaceutical compositions for treating retroviral infections, particularly HIV infections in a human, comprising serine leukocyte protease inhibitor (SLPI), or an analog or derivative thereof, and a pharmaceutically acceptable carrier.

The invention also includes a method for treating HIV infections in a human cell comprising administering thereto an effective amount of SLPI or an analog or derivative thereof.

BRIEF DESCRIPTION OF THE FIGURES

FIG. 1. SLPI blocks HIV replication in monocytes in a dose-dependent manner. Elutriated human monocytes were plated and exposed to HIV.+-.SLPI for one hour at 37.degree. C., washed, and incubated at 37.degree. C., drawing off supernatants and adding fresh medium every four days. The EC.sub.50 for this experiment was <0.1 .mu.g/ml (8.5 nM) with complete inhibition at 10 .mu.g/ml (850 nM).

FIG. 2. The SLPI inhibitory effect is long-lasting. At the 18-day time point, HIV is still 90% inhibited.

DETAILED DESCRIPTION OF THE INVENTION

The present invention provides methods for preventing retrovirus, particularly HIV infection of mammalian cells, particularly human cells, and associated diseases, including acquired immune deficiency syndrome (AIDS).

The term "pharmaceutically acceptable carrier" as used herein means a non-toxic, generally inert vehicle for the active ingredient, which does not adversely affect the ingredient or the patient to whom the formulation is administered.

The term "effective amount" as used herein means a predetermined amount of SLPI, or an analog or derivative thereof, sufficient to be effective against HIV in vivo.

According to the present invention, retroviral infections are treated by administering anti-retroviral agents in doses sufficient to diminish the effects of such infection. Retroviral infections are implicated in a number of diseases, including but not limited to cancer, autoimmune disease, and acquired immune deficiency syndrome. Human immunodeficiency virus infection is of particular interest according to the present invention.

A variety of anti-retroviral agents are known in the art. Most of these inhibit the activity of retroviral reverse transcriptase and include zidovudine (AZT), an analogue of thymidine, dideoxyinosine (ddI), and dideoxycytosine (ddC). Zidovudine is the primary anti-viral drug used in the treatment of HIV infection. Anti-retroviral agents are generally efficacious in a dose ranging from about 50 mg/day to about 1000 mg/day, more particularly from about 100 mg/day to about 500 mg/day, and in the case of zidovudine, specifically about 300 mg/day to about 500 mg/day. These agents are generally administered in oral formulations.

The protease inhibitors used in this invention can be prepared by means well known to those skilled in the art (see, e.g., U.S. Pat. No. 4,760,130; European patent application 85 905 953.7, PCT application WO86/03519, and U.S. patent application Ser. No. 07/712,354, supra). The disclosed protease inhibitors include secretory protease inhibitors comprising the amino acid sequence of naturally-occurring secretory leukocyte protease inhibitor or a substitution analog comprising the amino acid sequence (SEQ ID NO:4):

Gly-Lys-Ser-Phe-Lys-Ala-Gly-Val-Cys-Pro-Pro-Tyr-Lys-Lys-Pro-Gln-Cys-Leu-R2Glu-Cys-Gln-Ser-Asp-Trp-Gln-Cys-Pro-Gly-Lys-Lys-Arg-Cys-Cys-Pro-Asp-Thr-Cys-Gly-Ile-Lys-Cys-Leu-Asp-Pro-Val-Asp-Thr-Pro-Asn-Pro-Thr-Arg-Arg-Lys-Pro-Gly-Lys-Cys-Pro-Val-Thr-Tyr-Gly-Gln-Cys-R8Asp-Gly-Pro-Asn-Phe-Cys-Glu-R4Gly-R6 -Lys-Arg-Asp-Leu-Lys-Cys-Cys-R5Cys-Gly-Lys-Ser-Cys-Val-Ser-Pro-Val-Lys-R7 wherein R1 and R7 are the same or different and are selected from the group consisting of a substituted or unsubstituted amino acid residue or derivatives thereof; and R2, R3, R4, R5, R6, R8 and R9 are the same or different and are selected from the group consisting of methionine, valine, alanine, phenylalanine, tyrosine, tryptophan, lysine, glycine and arginine.

It is believed that minor alterations to the amino acid sequence at the C- and N-termini will not significantly alter the activity of the disclosed protease inhibitors. Specifically, substitution at the C- or N-terminus with a cyclized amino acid, for example, proline, is believed to result in a protease inhibitor having the desired serine protease inhibiting activity. Also, analogs of the disclosed protease inhibitors which have alterations at the C- or N-terminus, which alterations do not destroy the serine protease inhibitor properties of the analog, are included within the scope of the present invention.

The present invention relates to protease inhibitors which have been isolated in a purified form. Preferably, the serine protease inhibitors of the present invention are single-polypeptide-chain proteins which are substantially homologous to, and most preferably biologically equivalent to, the native serine protease inhibitor isolated from human parotid secretions. The native serine protease inhibitor is also referred to as the native parotid inhibitor. By "biologically equivalent" as used throughout the specification and claims, is meant that the compositions are capable of inhibiting the monocyte-derived or T-cell derived protease that is inhibited by SLPI, but not necessarily to the same degree. By "derivatives" as used throughout the ensuing specification and claims, is meant a degree of amino acid homology to the native parotid inhibitor, preferably in excess of 40%, most preferably in excess of 50%, with a particularly preferred group of proteins being in excess of 60% homologous with the native parotid inhibitor. The percentage homology, as above described, is calculated as the percentage of the components found in the smaller of the two sequences that may also be found in the larger of the two sequences, a component being understood as a sequence of four, contiguous amino acids.

One useful SLPI derivative is CLPI, a truncated SLPI molecule having only the last 60 amino acids of the native parotid inhibitor. These 60 amino acids are:

Leu Asp Pro Val Asp Thr Pro Asn Pro Thr Arg Arg Lys (SEQ. ID. NO.: 1)Pro Gly Lys Cys Pro Val Thr Tyr Gly Gln Cys Leu MetLeu Asn Pro Pro Asn Phe Cys Glu Met Asp Gly Gln CysLys Arg Asp Leu Lys Cys Cys Met Gly Met Cys Gly LysSer Cys Val Ser Pro Val Lys Ala.

The following nucleotide sequence has been used to encode the above 60 amino acid molecule:

CTG GAT CCT GTT GAC ACC CCA ACA CCA ACA AGG AGG AAG (SEQ. ID. NO.: 2)CCT GGG AAG TGC CCA GTG ACT TAT GGC CAA TGT TTG ATGCCT AAC CCC CCC AAT TTC TGT GAG ATG GAT GGC CAG TGCAAG CGT GAC TTG AAG TGT TGC ATG GGC ATG TGT GGG AAATCC TGC GTT TCC CCT GTG AAA GCT.

CLPI has been constructed by deleting from the SLPI gene the signal sequence and the nucleotides corresponding to the first 47 amino acids of the mature SLPI protein as described in U.S. patent application Ser. No. 07/712,354. CLPI can also be made by the method of Example 8 described in both PCT application WO86/03519 and European patent application 85 905 953.7. Although Example 8 in these two applications recites a method of making SLPI, this method can also be used to make CLPI. CLPI can be used to generate antibodies useful in purifying SLPI. Antibodies can be produced, for example, by the methods discussed in E. Harlow & D. Lane, Antibodies: A Laboratory Manual, pp. 92-114 (Cold Springs Harbor Laboratory, 1988).

By "analogs" as used herein, is meant any compound, including, for example, small organic compounds, that are functionally biologically equivalent to SLPI in inhibiting HIV infection. Such derivatives and analogs can be isolated by means well known to those skilled in the art, including using monocyte cells or T cells to screen for compounds that prevent SLPI from binding thereto. Analogs may also include specific SLPI muteins that have at least equivalent, and in some cases, greater activity than the native protein. Particularly useful SLPI muteins include substitution of the following amino acids at the residue position enumerated: Gly 20, Gly 72, Val 72, and Phe 72.

CLPI muteins are also within the scope of the invention. CLPI muteins which correspond to the SLPI muteins Gly 72, Val 72, and Phe 72 are herein referred to as Gly 25, Val 25, and Phe 25. Some contemplated CLPI muteins have the following amino acid sequence:

Leu Asp Pro Val Asp Thr Pro Asn Pro Thr Arg ArgLys Pro Gly Lys Cys Pro Val Thr Tyr Gly Gln CysR.sub.8 R.sub.3 R.sub.9 Asn Pro Pro Asn Phe Cys Glu R.sub.4 AspGly Gln Cys Lys Arg Asp Leu Lys Cys Cys R.sub.5 GlyR.sub.6 Cys Gly Lys Ser Cys Val Ser Pro Val Lys R.sub.7 wherein R7 is alanine, and R3, R4, R5, R6, and R8 are the same or different amino acids and one or more of R3, R4, R5, R6, and R8 may be methionine, valine, alanine, phenylalanine, tyrosine, tryptophan, lysine, glycine, or arginine. (SEQ. ID. NO.: 3) Analogs also include, for example, PEGylated forms of SLPI or CLPI which may have improved therapeutic characteristics over the native SLPI protein. Muteins which may be suitable for PEGylation include those having a cysteine residue at positions 13, 23, 52, 58, 68, and/or 75 of SLPI and at the corresponding sites 5, 11, 21, and 28 in CLPI. Preparation of cysteine muteins for PEGylation is described in PCT application WO 92/16221, filed Mar. 13, 1992, which is specifically incorporated herein by reference. A useful step in mutein production can include a refolding step in which cysteine is added to the solution containing the protein. The cysteine can aid in refolding and can bond to the substituted free cysteine in the mutein. One may also isolate from monocytes or T cells the SLPI inhibitable protein (SIP) from human monocyte cells or human T cells using standard biochemical techniques well known to those skilled in the art and purify proteins having proteolytic activity which is inhibited by SLPI. After purifying the protein (and, if necessary, sequencing it, cloning its gene, and expressing it in host cells, i.e., recombinantly producing SIP), one can screen for inhibitors of SIP by means well known to those skilled in the art. Alternatively, one can determine its structure and design inhibitors therefrom, also by means well known to those skilled in the art.

When SLPI, or an analog or derivative thereof (collectively, the "compounds"), is used to combat HIV infections in a mammal, the compound can be administered orally, parenterally, or locally, in a vehicle comprising one or more pharmaceutically acceptable carriers, the proportion of which is determined by the solubility and chemical nature of the compound, chosen route of administration and standard biological practice.

Pharmaceutical compositions containing the compounds of the present invention can be prepared. These compounds can be in a pharmaceutically-acceptable carrier to form the pharmaceutical compositions of the present invention. The term "pharmaceutically acceptable carrier" as used herein means a non-toxic, generally inert vehicle for the active ingredient, which does not adversely affect the ingredient or the patient to whom the composition is administered. Suitable vehicles or carriers can be found in standard pharmaceutical texts, for example, in Remington's Pharmaceutical Sciences, 16th ed., Mack Publishing Co., Easton, Pa. (1980), incorporated herein by reference. Such carriers include, for example, aqueous solutions such as bicarbonate buffers, phosphate buffers, Ringer's solution and physiological saline. In addition, the carrier can contain other pharmaceutically-acceptable excipients for modifying or maintaining the pH, osmolarity, viscosity, clarity, color, sterility, stability, rate of dissolution, or odor of the formulation.

The pharmaceutical compositions can be prepared by methods known in the art, including, by way of an example, the simple mixing of reagents. Those skilled in the art will know that the choice of the pharmaceutical carrier and the appropriate preparation of the composition depend on the intended use and mode of administration.

In one embodiment, it is envisioned that the compound and pharmaceutically acceptable carrier constitute a physiologically-compatible, slow-release formulation. The primary solvent in such a carrier can be either aqueous or non-aqueous in nature. In addition, the carrier can contain other pharmacologically-acceptable excipients for modifying or maintaining the pH, osmolarity, viscosity, clarity, color, sterility, stability, rate of dissolution, or odor of the formulation. Similarly, the carrier can contain still other pharmacologically-acceptable excipients for modifying or maintaining the stability, rate of dissolution, release, or absorption of the compound. Such excipients are those substances usually and customarily employed to formulate dosages for oral, parenteral or local administration in either unit dose or multi-dose form.

Once the pharmaceutical composition has been formulated, it can be stored in sterile vials as a solution, suspension, gel, emulsion, solid, or dehydrated or lyophilized powder. Such formulations can be stored either in a ready to use form or requiring reconstitution immediately prior to administration.

The manner of administering the formulations containing the compounds for systemic delivery can be via subcutaneous, intramuscular, intravenous, oral, intranasal, or vaginal or rectal suppository. Administration of the formulations containing the compounds for local delivery includes via intraarticular, intratracheal, or instillation or inhalations to the respiratory tract. Local administration via vaginal or rectal suppository or topical application is also contemplated. In addition it may be desirable to administer the compounds to specified portions of the alimentary canal either by oral administration of the compounds in an appropriate formulation or device.

For oral administration, the compound can be formulated in unit dosage forms such as capsules or tablets each containing a predetermined amount of the active ingredient, ranging from about 10 to 1000 mg, more preferably 10-200 mg per day per patient, even more preferably 20-200 mg per day per patient, in a pharmaceutically acceptable carrier. The compound can be formulated with or without pharmaceutically-acceptable carriers customarily used in the compounding of solid dosage forms. Preferably, the capsule or tablet is designed so that the active portion of the formulation is released at that point in the gastro-intestinal tract when bioavailability is maximized and pre-systemic degradation is minimized. Additional excipients can be included to facilitate absorption of the compound. Diluents, flavorings, low melting point waxes, vegetable oils, lubricants, suspending agents, tablet disintegrating agents, and binders can also be employed.

For parenteral administration, the compound is administered by either intravenous, subcutaneous or intramuscular injection, in compositions with pharmaceutically acceptable vehicles or carriers. For administration by injection, it is preferred to use the compound in solution in a sterile aqueous vehicle which may also contain other solutes such as buffers or preservatives as well as sufficient quantities of pharmaceutically acceptable salts or of glucose to make the solution isotonic. Subcutaneous injection is the preferred route of administration. Dosages are essentially the same as those set forth above for oral administration.

For local administration, the compound is preferably formulated to maximize the availability of the compound at the intended site of administration. Local administration of the compound at known or expected sites of entry or release of retrovirus into and from the body is particularly contemplated. For example, in consideration of the variety of mammalian sexual practices, topical administration of the compound to all orifices and interior or exterior genitalia is desirable. In addition, topical application to skin surfaces, and in particular to any skin interruptions such as cuts, abrasions, lesions, blisters and the like, is believed useful in preventing the exchange of retrovirus from one host to another. In one particularly useful embodiment, gloves containing the compounds formulated for local administration are prepared for those who come into contact with hosts or bodily fluids. Preferred dosages for local administration include those for which a local compound concentration of 1-10 ug/ml is achieved.

In the case of systemic administration, the specific dose is typically calculated according to the approximate body weight of the patient. On the other hand, for local administration, the specific dose is typically not a function of the patient's body weight. Other factors in determining the appropriate dosage can include the disease or condition to be treated or prevented, route of administration and the age, sex and medical condition of the patient. Generally, treatment is initiated with small dosages substantially less than the optimum dose of the compound. Thereafter, the dosage is increased by small increments until the optimum effect under the circumstances is reached.

In general, the compound is most desirably administered at a concentration level that will generally afford antivirally effective results without causing any harmful or deleterious side effects. It is desirable to maintain a blood level of the compound at a level sufficient to inhibit retrovirus infection of the host cell. This can be estimated by assaying the amount of compound that is effective in preventing retroviral infection of host cells, e.g., HIV into monocytes, in vitro, and then, using standard pharmacokinetic techniques, determining the amount of compound required to keep plasma level at the same inhibitory level, or up to 10-100 times more. In certain embodiments, the dosage and administration is designed to create a preselected concentration range of the compound in the patient's blood stream. Further refinement of the calculations necessary to determine the appropriate dosage for treatment involving each of the above mentioned formulations is routinely made by those of ordinary skill in the art and is within the ambit of tasks routinely performed by them without undue experimentation, especially in light of the dosage information and assays disclosed herein. These dosages may be ascertained through use of the established assays for determining dosages utilized in conjunction with appropriate dose-response data.

Although the formulations disclosed hereinabove are effective and relatively safe medications for treating HIV infections, the possible concurrent administration of these formulations with antibacterial or other antiviral medications or agents to obtain beneficial results is not excluded. Such other antiviral medications or agents include soluble CD4, zidovudine, dideoxycytidine, phosphonoformate, ribavarin, antiviral interferons (e.g. alpha-interferon or interleukin-2) or aerosol pentamidine. Particularly useful antibacterial agents include those which target sexually-transmitted pathogens or the opportunistic pathogens often associated with retroviral infection.

It should be noted that the compound formulations described herein may be used for veterinary as well as human applications and that the term "patient" should not be construed in a limiting manner. In the case of veterinary applications, the dosage ranges should be the same as specified above.

It is also possible to utilize the nucleic acid sequences for SLPI themselves as therapeutic agents. For example, gene transfer methodologies can be employed to transfer a coding sequence for SLPI or an analog thereof to the patient where the gene can be replicated and expressed in vivo. Particularly useful gene therapy methods are discussed in the published international application WO 93/00051, which is specifically incorporated herein by reference.

Compositions containing the compounds useful for storing or treating instruments, devices, or the like which contact hosts or bodily fluids are also within the scope of the invention. Nonlimiting examples of such instruments, devices, or the like include needles, speculums, scalpels, surgical clips, or other articles which might penetrate a host or contact bodily fluids. Preferably, the compositions neither adversely affect the activity of the compounds contained therein nor adversely react with the articles to be treated or stored. Such compositions can be prepared by methods known in the art particularly in light of the information contained herein.

The invention also includes a method for inhibiting retrovirus infection by blocking the function of a host cell enzyme, which enzyme function is necessary for retrovirus infection of the cell. As stated above, SLPI is a potent inhibitor of elastase, trypsin, cathepsin G, and chymotrypsin.

The host cell enzyme can be an elastase-like enzyme. The term "elastase-like enzyme" as used herein means a protease which cleaves at the carboxy-terminal side of amino acids with small to medium sized hydrophobic side chains such as leucine, isoleucine, valine, and alanine.

The host cell enzyme can also be a chymotrypsin-like enzyme. As used herein, the term "chymotrypsin-like enzyme" means a protease which cleaves at the carboxy-terminal side of amino acids with medium to large hydrophobic side chains, including for example, phenylalanine, tyrosine, trytophan, leucine, and isoleucine.

A trypsin-like enzyme can also be a host cell enzyme. The term "trypsin-like" enzyme as used herein means a protease which cleaves at the carboxy-terminal side of basic amino acids including, for example, lysine and arginine.

In addition, cathepsin G can also be a host cell enzyme.

The invention is exemplified by the following illustrative examples:

EXAMPLE 1

Peripheral blood monocytes (PBM) were isolated from healthy donors by elutriation, plated in culture dishes, and incubated for several days. SLPI was mixed with HIV (Bal) and applied to PBM for one hour at 37.degree. C. Cells were washed and incubated for additional time, with media changes and reverse transcriptase determinations on supernatants done every three days. We found that SLPI effectively blocks HIV replication at a concentration of 1 .mu.g/ml (FIG. 1). At concentrations.ltoreq.20 .mu.g/ml, SLPI inhibition is diminished. The inhibitory effect is long lasting, with significant inhibition seen out to 18 days (FIG. 2).

EXAMPLE 2

PBM were plated and incubated as in Example 1. SLPI was applied to cells for about one hour, cells were then washed, and treated with HIV. Medium was changed and assays done as in Example 1. We found that SLPI was more effective at blocking HIV when cells were pretreated with SLPI than when cells were treated with a mix of SLPI and HIV.

EXAMPLE 3

We have also demonstrated using essentially the same protocol as in Example 1, but substituting T-cells for monocytes, that SLPI is effective in inhibiting HIV replication in T-cells.

EXAMPLE 4

A human T-lymphocytic cell line (H-9) was maintained in suspension culture in RPMI 1640 with 10% fetal calf serum (FCS) and 200 micrograms per liter gentamicin. SLPI was added to the culture medium at a final concentration of 100 micrograms per milliliter. After 24 hours, cells were washed, inoculated for four hours with HIV strain IIIB, washed again, and resuspended at a density of 500,000 cells per milliliter. Media was supplemented and maintained with SLPI at a final concentration of 100 micrograms per milliliter immediately after resuspension (T=0) or 2 days after resuspension (T=2). Culture supernatant was collected and cultures were fed every 2 days. Supernatant collected 8 days after infection was assayed for reverse transcriptase activity by measuring uptake of tritiated thymidine onto a poly(rA)-oligo(dT) template.

As shown in Table 1, in SLPI pretreated cells, SLPI inhibited viral replication by approximately 62% and 54% when added immediately after infection and 2 days after infection, respectively.

TABLE 1______________________________________SLPI PRE-TREATED CELLS Negative Positive Control Control T = 0 T = 2______________________________________RT Activity (mean cpm) 955 86,205 32,594 39,554Standard Deviation .+-.330 .+-.9,676 .+-.7,220 .+-.8,737______________________________________

EXAMPLE 5

The experiment was performed as described in Example 4 except that 1000-fold concentrated HIV strain IIIB was incubated with 100 micrograms per milliliter SLPI for 6 hours on ice prior to inoculation. This HIV/SLPI mixture was diluted 1000-fold prior to the four hour inoculation.

As shown in Table 2, using SLPI pre-treated virus and cells, SLPI inhibited viral replication by approximately 64% and 26% when added immediately after infection and 2 days after infection, respectively.

TABLE 2______________________________________SLPI PRE-TREATED VIRUS AND CELLS Negative Positive Control Control T = 0 T = 2______________________________________RT Activity (mean cpm) 2,889 59,004 20,676 43,432Standard Deviation .+-.565 .+-.10,988 .+-.4,111 .+-.14,982______________________________________

EXAMPLE 6

The experiment was performed as in Example 5 except that cells were clean, i.e. not cultured with SLPI prior to inoculation. Using clean cells and SLPI pre-treated virus, SLPI inhibited viral replication by approximately 59% and 32% when added immediately after infection and 2 days after infection, respectively (Table 3).

TABLE 3______________________________________SLPI PRE-TREATED VIRUS Negative Positive Control Control T = 0 T = 2______________________________________RT Activity (mean cpm) 4,763 70,076 28,383 47,436Standard Deviation .+-.1,698 .+-.15,803 .+-.5,520 .+-.11,679______________________________________

EXAMPLE 7

The experiment was performed as in Examples 4-6 except that neither cells nor virus were exposed to SLPI prior to inoculation. Using clean cells and clean virus, SLPI inhibited viral replication by approximately 50% and 42% when added immediately after infection and 2 days after infection, respectively (Table 4). Table 5 shows the reverse transcriptase activity which was present in culture supernatant assayed 4, 6, and 8 days after infection.

TABLE 4______________________________________CLEAN CELLS AND VIRUS Negative Positive Control Control T = 0 T = 2______________________________________RT Activity (mean cpm) 531 79,356 38,969 46,004Standard Deviation .+-.186 .+-.17,497 .+-.7,700 .+-.8,492______________________________________ TABLE 5______________________________________CLEAN CELLS AND VIRUS Negative Positive T = 0 T = 2______________________________________Day 4 (mean cpm) 435 1,556 797 1,287Standard Deviation .+-.85 .+-.300 .+-.222 .+-.204Day 6 (mean cpm) 952 72,085 15,846 41,240Standard Deviation .+-.715 .+-.12,219 .+-.5,644 .+-.14,542Day 8 (mean cpm) 1,519 13,853 7,617 11,946Standard Deviation .+-.475 .+-.3,458 .+-.3,031 .+-.2,889______________________________________

EXAMPLE 8

The effect of different SLPI muteins on viral replication was also investigated. Clean H-9 cells were incubated with clean virus for 4 hours as in Example 7. After washing, cells were resuspended at a density of 500,000 cells per milliliter in media containing 30 micrograms per milliliter SLPI or the SLPI muteins shown in Table 6. Culture supernatant was assayed for reverse transcriptase activity 8 days later (Table 6).

TABLE 6__________________________________________________________________________ Negative Positive Wild Control Control Type Gly 20 Gly 72 Val 72 Lys 72 Phe 72__________________________________________________________________________RT Activity (mean cpm) 4,815 55,126 39,323 39,387 40,549 36,077 52,239 8,384Standard Deviation .+-.2,849 .+-.6,637 .+-.10,933 .+-.11,143 .+-.3,537 .+-.7,859 .+-.5,863 .+-.1,924__________________________________________________________________________

EXAMPLE 9

The experiment was performed as in Example 8 except that after inoculation, cells were resuspended in media containing 100 micrograms per milliliter SLPI or the Phe 72 mutein. Culture supernatant was assayed for reverse transcriptase activity 2, 4, 6, 8, and 10 days post-infection (Table 7). Tables 6 and 7 show that the effect of the Phe-72 mutein was particularly pronounced.

TABLE 7______________________________________ Negative Positive SLPI PHE-72______________________________________Day 2 (mean cpm) 1,386 995 897Standard Deviation .+-.914 .+-.246 .+-.472Day 4 (mean cpm) 1,356 1,087 1,380Standard Deviation .+-.370 .+-.414 .+-.442Day 6 (mean cpm) 1,142 2,103 1,526 748Standard Deviation .+-.389 .+-.498 .+-.508 .+-.243Day 8 (mean cpm) 77,931 25,241 3,491Standard Deviation .+-.9,779 .+-.8,339 .+-.1,086Day 10 (mean cpm) 21,431 12,499 2,239Standard Deviation .+-.1,890 .+-.3,495 .+-.444______________________________________

EXAMPLE 10

To determine the effect of SLPI alone, H-9 cell proliferation was evaluated by thymidine incorporation assays using 200,000 H-9 cells cultured with 100 micrograms per milliliter SLPI and without SLPI. Cultures were pulsed with media containing 2.5 microcuries of tritiated thymidine at day 0, 1, and 2; incorporated counts were measured on day 1, 2, and 3. As shown in Table 8, SLPI is not toxic to these cells.

TABLE 8______________________________________THYMIDINE UPTAKE (mean cpm)H-9 PROLIFERATION Day 1 Day 2 Day 3______________________________________Control (-SLPI) 20,860 67,401 53,326Standard Deviation .+-.581 .+-.2,529 .+-.3,783+SLPI 100 .mu.g/ml 20,437 61,892 54,592Standard Deviation .+-.1,503 .+-.216 .+-.2,781______________________________________

EXAMPLE 11

We also investigated inhibition of viral production from chronically infected cells using the promonocytic cell line U1. Suspension cultures of U1 were maintained in RPMI with 10% FCS and 200 micrograms per liter gentamicin. Cells were harvested, washed, and suspended at a density of 2.5 million cells per milliliter. Suspended cells were cultured overnight in media containing 100 or 200 micrograms per milliliter SLPI or media alone. Virus was induced by addition of 13-phorbol-12-myristate acetate (PMA) to a final concentration of 1 micromolar. After 48 hours, cell culture supernatant was assayed for reverse transcriptase activity as in Examples 4-9. As shown in Table 9, SLPI significantly inhibited viral production from these chronically infected cells.

TABLE 9______________________________________ -PMA +PMA +PMA-PMA +SLPI +PMA +SLPI +SLPI-SLPI (200 .mu.g/ml) -SLPI (200 .mu.g/ml) (100 .mu.g/ml)______________________________________RT Activ- 1,052 994 5,052 2,864 2,648ity (meancpm)Standard .+-.352 .+-.447 .+-.2,053 .+-.403 .+-.374Deviation______________________________________

EXAMPLE 12

SLPI was shown to directly bind U937 cells, which are derived from a human monocyte cell line, and HuT78 cells, which are derived from a human T cell line. SLPI was radiolabelled with I-125, having a specific activity of 125 Curies per millimole, using the Bolton Hunter reagent. The labeled protein had normal anti-elastase and anti-trypsin activity. Activity against cathepsin G and chymotrypsin was not determined. Specific binding of radiolabelled SLPI ("*SLPI") was determined by mixing increasing concentrations of *SLPI with cells (10.sup.7 /ml), in the absence and presence of cold SLPI using the procedure set forth in Dripps et al., J. Biol. Chem., Vol. 266, No. 16, pp. 10331-10336 (1991), specifically incorporated herein by reference. A Scatchard plot of the data, shown in Tables 10 and 11, gave an apparent K.sub.D of 2 nM for U937 cells and HuT78 cells. This shows that SLPI binds with high affinity to U937 cells and that the binding is physiologically relevant based on the concentration of SLPI in body fluids. Kramps, J. A. et al., AM REV RESPIR DIS, Vol. 129, pp. 959-963 (1984), specifically incorporated herein by reference.

TABLE 10______________________________________HuT78 CELLS sites boundpM *SLPI specific cpm bound pM bound per free per cell______________________________________ 40 0 not done not done not done 80 30 0.75 0.0095 45 160 37 0.93 0.0058 56 320 101 2.53 0.0079 152 640 101 2.53 0.0039 1521280 303 7.6 0.0059 4582560 398 9.98 0.0039 6015120 538 13.5 0.0026 81310,240 1302 32.7 0.0032 197020,480 1210 30.3 0.0015 1825______________________________________ TABLE 11______________________________________U937 CELLS bound sites boundpM *SLPI specific cpm *SLPI (pM) bound per free per cell______________________________________ 40 380 9.5 0.311 572 80 543 13.6 0.205 819 160 1315 32.9 0.259 1,982 320 2621 65.7 0.258 3,957 640 4630 116.1 0.221 6,9931280 8650 217 0.204 13,0702560 13,500 339 0.153 20,4185120 15,124 379 0.080 22,82710,240 18,462 463 0.047 27,88620,480 18,769 471 0.024 28,368______________________________________

EXAMPLE 13

U937 cells were induced by 13-phorbol-12-myristate acetate ("PMA"). Hanson et al., J. Biol. Chem., Vol. 265, pp. 1524-1530 (1990); and Welgus et al., J. Clin. Invest., Vol. 77, pp. 1675-1681 (1986), specifically incorporated herein by reference, show that PMA induction of U937 cells reduces cathepsin G and elastase activity.

U937 cells at an initial concentration of 10,000 cells per ml were placed in two flasks. PMA was added to one flask at a final concentration of 25 ng per ml. After 48 hours, cells were harvested from both flasks. Using the method of Dripps et al., J. Biol. Chem., Vol. 266, No. 16, pp. 10331-10336 (1991), and labelling with I-125, having a specific activity of 91.5 Curries per millimole, the number of SLPI binding sites was determined. A Scatchard plot of the data in Tables 12 and 13 shows the number of SLPI binding sites in the PMA induced cells was reduced by 70%. In this experiment, the K.sub.d in non-induced cells was 1.1 lnM; The K.sub.d in PMA-induced cells was 1.0 nM. The reduction in the number of SLPI binding sites in the PMA-induced cells is consistent with SLPI binding to elastase and cathepsin G on the cell surface.

TABLE 12______________________________________U937 CELLS-MINUS PMA bound sites boundpM *SLPI specific cpm *SLPI (pM) bound per free per cell______________________________________ 80 400 37 0.860 2,229 320 1,077 101 0.461 6,083 640 2,213 207 0.478 12,4681280 4,234 396 0.448 23,8512560 6,340 593 0.301 35,7165120 7,989 748 0.171 45,05210,240 9,022 844 0.090 50,83420,480 9,783 915 0.047 55,110______________________________________ TABLE 13______________________________________U937 CELLS-PLUS PMA sites boundpM *SLPI specific cpm bound (pM) bound per free per cell______________________________________ 80 339 32 0.67 1,909 320 698 65 0.255 3,915 640 1,103 103 0.192 6,2041,280 1,391 130 0.113 7,8302,560 2,302 215 0.092 12,9495,120 1,442 135 0.027 8,13110,240 2,933 274 0.028 16,50320,480 2,725 255 0.0126 15,358______________________________________

EXAMPLE 14

The binding of SLPI to U937 and HuT78 cells was shown to be specific. *SLPI was competitively inhibited with cold SLPI to these intact cells using the procedure set forth in Dripps et al., J. Biol. Chem., Vol. 266, No. 30, pp. 20311-20315 (1991), specifically incorporated by reference. The percentage of *SLPI that was bound at various nanomolar concentrations of cold SLPI is set forth in Table 14. Specific binding was not inhibited by other basic proteins or other protease inhibitors at the concentrations listed in Table 15.

TABLE 14______________________________________COMPETITIVE INHIBITION OF *SLPI BINDINGSLPI (nM) % *SLPI BOUND (U937) % *SLPI BOUND (HuT78)______________________________________0.00 94 1000.024 100 880.078 101 900.25 92 690.80 77 622.6 55 568.2 24 not done26 12 3784 3.5 9.3270 0.00 0.00860 0.00 8.72750 0.50 not done______________________________________ TABLE 15______________________________________COMPETITION STUDY USING VARIOUS COMPOUNDSCOMPOUND CONCENTRATION COMMENTS______________________________________HPSTI 2.7 .mu.M INHIBITS TRYPSINbFGF 2.7 .mu.M STRONGLY BASIC PROTEINPMSF 10 mM INHIBITS TRYPSINBENZAMIDINE 10 mM INHIBITS TRYPSINAPROTININ 10 .mu.M INHIBITS TRYPSINLEUPEPTIN 10 .mu.M INHIBITS TRYPSINANTIPAIN 10 .mu.M INHIBITS TRYPSIN.alpha.-1-ANTITRYPSIN 10 .mu.M INHIBITS TRYPSIN AND ELASTASEPEPSTATIN A 10 .mu.M INHIBITS PEPSIN______________________________________

EXAMPLE 15

SLPI muteins were also shown to competitively inhibit SLPI binding to U937 cells and HuT78 cells using the procedure set forth in Example 14. (Dripps et al., J. Biol. Chem., Vol. 266, No. 30, pp. 20311-20315 (1991)). Table 16 shows the affinities, as expressed by dissociation constant, K.sub.d, of SLPI and of various SLPI muteins for U937 and for HuT78 cells, as estimated by the Cheng-Prusoff relationship. The Cheng-Prusoff relationship is set forth in Dripps et al., J. Biol. Chem., Vol. 266, No. 30, pp. 20311-20315 (1991). Tables 17 and 18 show the percentage of radiolabelled SLPI bound at various concentrations of cold SLPI and of SLPI muteins to U937 and HuT78 cells, respectively.

TABLE 16______________________________________AFFINITIES OF SLPI AND SLPI MUTEINS FOR U937AND HuT78 CELLSMUTEIN SLPI GLY 72 GLY 20 LYS 72 PHE 72 VAL 72______________________________________K.sub.d (nM) 2 400 3.5 2.5 2 30U937K.sub.d (nM) 2 200 13 200 3 9HuT78______________________________________ TABLE 17__________________________________________________________________________COMPETITION STUDY USING SLPI MUTEINS% *SLPI BOUND TO U937 CELLS AT VARIOUS CONCENTRATIONS OF(COMPETITORS) % *SLPI % *SLPI % *SLPI % *SLPI % *SLPI % *SLPInM BOUND BOUND BOUND BOUND BOUND BOUNDCOMPETITOR (SLPI) (GLY72) (GLY20) (LYS72) (PHE72) (VAL72)__________________________________________________________________________0 109 131 130 117 94 950.024 111 116 110 116 not done not done0.078 111 118 117 113 not done not done0.25 106 120 110 103 not done not done0.80 78 116 91 86 77 902.6 46 115 not done 71 51 808.2 22 117 49 39 22 7826 11 112 28 21 not done not done84 7 101 11 10 4 48270 5 75 6 6 not done not done860 4 53 5 5 not done not done2750 4 28 5 4 5 8__________________________________________________________________________ TABLE 18__________________________________________________________________________COMPETITION STUDY USING SLPI MUTEINS% *SLPI BOUND TO HuT78 CELLS AT VARIOUS CONCENTRATIONSOF (COMPETITORS) % *SLPI % *SLPI % *SLPI % *SLPI % *SLPI % *SLPInM BOUND BOUND BOUND BOUND BOUND BOUNDCOMPETITOR (SLPI) (LYS72) (GLY72) (GLY20) (PHE72) (VAL72)__________________________________________________________________________0 100 100 100 100 100 1000.80 79 105 108 109 69 932.6 76 118 105 91 90 968.2 57 116 85 103 57 8184 27 86 110 50 36 432750 0 34 28 7 1 14__________________________________________________________________________

EXAMPLE 16

SLPI and SLPI muteins were shown were shown to bind plasma membranes derived from U937 cells. Membranes were prepared as follows. Cells treated with a 10 mM NaCl solution were disrupted in a cell homogenizer. The plasma membrane fraction was enriched using a 41% sucrose step gradient. The membrane band was isolated and washed three times in phosphate buffered saline. Competitive binding, using the competitors set forth in Tables 19 and 20, to these membranes was performed as in Example 14 except that specific complexes were captured using the filtering procedure of Slack, J. et al., Biotechniques, Vol. 7, pp. 1132-1138 (1989), specifically incorporated herein by reference.

The affinities (K.sub.d), as estimated by the Cheng-Prusoff relationship, for SLPI, SLPI muteins, gp120, alpha-1 protease inhibitor (".alpha.-1-PI"), and aprotinin are shown in Table 19. The percentage of radiolabelled SLPI that was bound at various concentrations of cold SLPI or SLPI muteins is shown in Table 20. These results show that gp120 can compete with SLPI binding to its target. .alpha.-1-PI and aprotinin can also compete but at reduced affinities. Since gp120 can be a substrate for the host cell enzyme, the ability of gp120 to compete can be hampered by its being cleaved.

TABLE 19______________________________________AFFINITIES OF SLPI AND SLPI MUTEINS FOR U937 MEMBRANESCOMPOUND K.sub.d (nM)______________________________________SLPI 2PHE 72 1GLY 72 5GLY 20 5LYS 72 5VAL 72 10gp120 4001-PIha. 1,000APROTININ 10,000______________________________________ TABLE 20__________________________________________________________________________CPM *SLPI BOUND AT VARIOUS CONCENTRATIONS OF COMPETITORCOMPETITOR(nM) 0 0.800 2.56 8.20 83.9 268 2750__________________________________________________________________________SLPI 18700 14753 10969 5709 2068 not done 1682LYS72 18700 14194 12213 7615 3497 3235 5008GLY72 18700 14716 11994 7206 3711 2840 1785PHE72 18700 12419 8919 4257 1662 2585 1537VAL72 18700 14023 11616 9238 3381 1737 923GLY72 18700 14036 11337 7298 3944 2531 1433GLY20 18700 14915 11390 7395 2486 1620 1501bFGF 18700 14010 13480 14464 14967 14354 14710LYSOZYME 18700 15190 14659 15012 15477 14884 15948__________________________________________________________________________

EXAMPLE 17

The binding sites on U937 and HuT78 cells for the Phe72 mutein were characterized. Membranes from U937 and Hut78 cells, prepared as described in Example 16, were treated with 0.25% CHAPS detergent and centrifuged, dialyzed in 20 mM potassium phosphate, pH5.5, 0.25% CHAPS, and chromatographed on monoS column, and eluted with a linear salt gradient. Fractions were analyzed by their ability to bind to immobilized the Phe72 mutein on a BIAcore instrument. The BIAcore analytical system is available from Pharmacia Biosensor AB, Uppsala, Sweden. See, Nature, Vol. 361, pp. 186-187 (1993), specifically incorporated herein by reference.

From solubilized U937 membrane monoS fractions, 4 peaks of binding activity to the Phe72 mutein were seen; peak 1 was from the monoS column flowthrough, peak 2 and 3 comigrated on monoS with purified human neutrophil elastase ("HNE") obtained from Calbiochem, San Diego, Calif. Peak 4 appears to be cathepsin G based on comparison with the monoS profile of cathepsin G appearing in Maison, C. M. et al., Journal of Immunology, Vol. 147, pp. 921-926 (1991), specifically incorporated herein by reference.

From HuT78 membranes, 1 peak of binding activity to the Phe72 mutein was seen. This peak coeluted on monos with the second peak of activity from U937 membranes.

Using reducing SDS-PAGE, Western blot analysis of these active peaks showed that peaks 2 and 3 from U937 and the single peak from Hut78 contain a 30 kDa protein that reacts with an anti-elastase polyclonal antibody obtained from Calbiochem.

Affinity chromatography of CHAPS solubilized U937 membranes on a Phe72 SLPI mutein affinity column, prepared using NHS-activated Superose, PC 3.2/2 obtained from Pharmacia Biotech Inc., Piscataway, N.J., resulted in isolation of a doublet of proteins with the same mobility on reducing SDS-PAGE as active peaks 2 and 3. NHS-activated Superose, PC 3.2/2 is described at page 8 in the Pharmacia Biotech Inc. Biotechnology Products Catalog 1994.

EXAMPLE 18

SLPI and SLPI muteins were shown to inhibit proteolysis of the HIV-1 envelope protein, gp120, by human neutrophil elastase ("HNE"). As stated above, gp120 specifically binds to the CD4 receptor on T lymphocytes and on monocytes and macrophages.

Inhibition of HNE proteolytic cleavage of gp120 was shown as follows. The gp120 (400 nM), obtained from American Bio-Technologies, Cambridge, Mass., was incubated with increasing HNE (0.1 to 100 nM) concentrations. Incubation at 37.degree. for 30 min, with 10 nM HNE yielded primarily 2 bands on Western blot, using reducing SDS-PAGE and probing with an anti-gp120 polyclonal antibody from American Bio-Technologies. The bands had an approximate molecular weight of 50 kDa and 70 kDa. This limited HNE proteolysis was inhibited by an anti-V3 loop monoclonal antibody (0.2 to 4 .mu.M), also obtained from American Bio-Technologies, and by SLPI and SLPI muteins Phe72, Gly72, and Lys72 (0.1 to 100 nM). The IC50 of Lys72 appeared to be higher than that of SLPI or the other SLPI muteins. This is consistent with the observation that the Lys72 mutein is less effective in inhibiting HIV replication than wild type SLPI, the Phe72, and Gly72 muteins. (See Table 6, Example 8, above).

Purified soluble CD4 (400 nM), obtained from American Bio-Technologies, did not inhibit this cleavage.

gp120 (400 nM) was also incubated at 37.degree. for 30 min, with 10 nM cathepsin G and yielded different bands. This suggests that cathepsin G does not cleave gp120 in the V3 loop.

EXAMPLE 19

Radiolabelled SLPI ("*SLPI") was shown to bind to elutriated human peripheral blood monocytes ("PBM"). SLPI was radiolabelled using Na.sup.125 I, obtained from ICN, 2727 Campus Dr., Irving, Calif. 92715, and Iodogen, obtained from Pierce, Rockford, Ill., according to the manufacturers' directions. Radiolabelling yielded 1.3 microcuries per microgram of SLPI. PBM (20.times.10.sup.6) in 1 ml Dulbecco's-modified Eagle's medium ("DMEM") were incubated with 0.6 nM to 13.2 nM *SLPI for 1 hour at 37.degree. C. Cells were then pelleted and washed 3 times with phosphate buffered saline ("PBS"). Cell pellets were resuspended in Laemmli sample buffer and the samples applied to a 14% polyacrylamide gels under reducing conditions. Gels were analyzed using a phosphor imager to detect .sup.125 I emission.

Alternatively, PBM (12.times.10.sup.6) in 1 ml DMEM were incubated for 30 minutes at 4.degree. C. with increasing amounts of *SLPI. Cells were layered onto a 20% sucrose cushion and centrifuged 4 times in an Eppendorf microfuge. Cell pellets were removed and analyzed for gamma emission. Nonspecific binding, determined by including a 1000-fold excess of unlabelled SLPI was subtracted from total binding to give specific binding.

*SLPI binding was dose dependent and saturable at approximately 0.5 micrograms/ml *SLPI. The *SLPI concentration required for half-maximal binding to PBM was determined to be approximately 10 nM. This value (10 nM) is similar to the K.sub.d of *SLPI for U937 cells (see Examples 12 and 13).

In addition, *SLPI was crosslinked to PBM. PBM (4.times.10.sup.6) in 200 .mu.l DMEM were incubated at 37.degree. C. for 1 hour with 1.5 .mu.M *SLPI. Cells were spun down and washed 3 times at room temperature with PBS and resuspended in 100 .mu.l PBS. Either 0.5mM DSS or 0.5mM BS.sup.3, were added for 30 minutes at room temperature. DSS is an organic crosslinking agent; BS.sup.3 is a water soluble crosslinking agent. Both cross-linking agents were obtained from Pierce, Rockford, Ill., After incubation with the crosslinking agent, the cells were spun down and resuspended in Laemmli sample buffer and analyzed on a 4-15% gradient polyacrylamide gel under reducing conditions. Gels were dried and emission analyzed using a phosphor imager. Control samples for cross-linking consisted of *SLPI and cross-linking agent without monocytes.

In gels of crosslinked monocytes, using either cross-linking agent, one major crosslinked band appeared. This band was not seen in the control samples. Under reducing and nonreducing conditions, the molecular weight of the band was approximately 30 kDa. This molecular weight is consistent with the binding of SLPI (12 kDa) to elastase (25 kDa).

EXAMPLE 20

Using antibody staining, elastase was shown to be present on the surface of human monocytes. Purified rabbit polyclonal antibody to human neutrophil elastase ("Anti-HNE") was obtained from Calbiochem, LaJolla, Calif. Anti-HNE was conjugated to fluorescein isothiocyanate ("FITC") using the procedure set forth in Current Protocols in Immunology, 5.3.2-5.3.3, Coligan et al. eds. (1993), specifically incorporated herein by reference. Elutriated human monocytes were stained with either FITC-conjugated IgG (control antibody), FITC-conjugated anti-HNE ("FITC-anti-HNE"), or FITC-conjugated antibody against the monocyte marker, CD14. Control IgG antibody and FITC-conjugated anti-CD14 antibody were obtained from Becton Dickinson, San Jose, Calif.

The cells (0.5.times.10.sup.6 in 50 .mu.l buffer) stained positive in a dose-related manner using 1 .mu.g/ml-50 .mu.g/ml anti-HNE. Staining by the anti-CD14 antibody confirmed that the cells were monocytes. No staining was seen with the control IgG.

EXAMPLE 21

In cross-linking experiments, SLPI did not directly interact with HIV-1. In separate experiments, approximately equal amounts of HIV-1 strains IIIB or BAL were incubated with 1 .mu.M radiolabelled SLPI (*SLPI) in 200 .mu.DMEM for 1 hour at 37.degree. C. After 1 hour, crosslinking reagent DSS (see Example 19) was added and incubation continued for 30 minutes at room temperature. Incubation was stopped by addition of Laemmli sample buffer. No attempt was made to remove free *SLPI from virus. Samples were applied to a 12% polyacrylamide gel run under reducing conditions. In a parallel sample, 2 .mu.M *SLPI was crosslinked in the absence of virus. The volume of the parallel sample that was loaded on the gel was 5 times larger than the volume of the virus-containing samples. Gels were dried and analyzed using a phosphor imager to detect .sup.125 I emission. No crosslinked products were detected in the viral samples. Only free *SLPI was observed. In the parallel sample, multiple crosslinked bands (SLPI crosslinked to itself) were seen.

EXAMPLE 22

SLPI was shown to neither activate nor inhibit monocyte activation by lipopolysaccharide ("LPS"). Elutriated human monocytes (5.times.10.sup.6 /ml in DMEM with 10% human serum) were incubated overnight at 37.degree. C., in the presence of 5% CO.sub.2 with:

(1) medium alone (control); (2) 1 .mu.g/ml LPS; (3) SLPI at 1 .mu.g/ml, 10 .mu.g/ml, or 100 .mu.g/ml; or (4) 1 .mu.g/ml LPS plus SLPI at 10 .mu.g/ml or 100 .mu.g/ml. After overnight incubation, the cells from each of the seven groups were divided into 4 aliquots and stained using FITC-conjugated antibodies against three cell surface antigens and an FITC-conjugated IgG as a control. The three surface antigens probed were: (1) interleukin 2 receptor (IL-2R); (2) CD4; and 3) CD14.

The stained cells were analyzed by fluorescence-activated cell sorting ("FACS") and the results are shown in Table 21. The percent of cells labelled was calculated by percent labelled with specific antibody minus percent labelled with non-specific control antibody.

Control cells stained negative for IL-2R, which is a marker for cell activation. Control cells stained slightly positive for CD4 and positive for CD14, a monocyte marker.

Cells incubated overnight with LPS were activated, as demonstrated by positive IL-2R staining. In the LPS-activated cells, the CD4 staining disappeared and CD14 remained positive.

Cells incubated with SLPI in the absence of LPS stained negative for IL-2R. Thus, SLPI did not activate the monocytes. Cells incubated with SLPI and LPS, however, stained positive for IL-2R. Thus, SLPI did not interfere with LPS activation of monocytes.

TABLE 21______________________________________FACS ANALYSIS OF SLPI EFFECT ON MONOCYTECELL SURFACE ANTIGENSCELL TREATMENT IL-2R CD4 CD14______________________________________CONTROL neg. 28.3% 93%LPS (1 .mu.g) 124% neg. 131%SLPI (1 .mu.g) neg. 30.5% 87.9%SLPI (10 .mu.g) neg. 27.4% 115%SLPI (100 .mu.g) neg. 32.2% 104%LPS (1 .mu.g) 132.2% neg. 104.5%+SLPI (10 .mu.g)LPS (1 .mu.g) 131.2% neg. 137%+SLPI (100 .mu.g)______________________________________

The foregoing description of the invention is exemplary for purposes of illustration and explanation. It should be understood that various modifications can be made without departing from the spirit and scope of the invention. Accordingly, the following claims are intended to be interpreted to embrace all such modifications.

__________________________________________________________________________# SEQUENCE LISTING- (1) GENERAL INFORMATION:- (iii) NUMBER OF SEQUENCES: 4- (2) INFORMATION FOR SEQ ID NO:1:- (i) SEQUENCE CHARACTERISTICS:#acids (A) LENGTH: 60 amino (B) TYPE: amino acid (C) STRANDEDNESS: single (D) TOPOLOGY: linear- (ii) MOLECULE TYPE: protein#ID NO:1: (xi) SEQUENCE DESCRIPTION: SEQ- Leu Asp Pro Val Asp Thr Pro Asn - # Pro Thr Arg Arg Lys Pro GlyLys# 15- Cys Pro Val Thr Tyr Gly Gln Cys - # Leu Met Leu Asn Pro Pro AsnPhe# 30- Cys Glu Met Asp Gly Gln Cys Lys - # Arg Asp Leu Lys Cys Cys MetGly# 45- Met Cys Gly Lys Ser Cys Val Ser - # Pro Val Lys Ala# 60- (2) INFORMATION FOR SEQ ID NO:2:- (i) SEQUENCE CHARACTERISTICS:#pairs (A) LENGTH: 180 base (B) TYPE: nucleic acid (C) STRANDEDNESS: single (D) TOPOLOGY: linear- (ii) MOLECULE TYPE: DNA (genomic)#ID NO:2: (xi) SEQUENCE DESCRIPTION: SEQ- CTGGATCCTG TTGACACCCC AACACCAACA AGGAGGAAGC CTGGGAAGTG CC - #CAGTGACT 60- TATGGCCAAT GTTTGATGCC TAACCCCCCC AATTTCTGTG AGATGGATGG CC - #AGTGCAAG 120- CGTGACTTGA AGTGTTGCAT GGGCATGTGT GGGAAATCCT GCGTTTCCCC TG - #TGAAAGCT 180- (2) INFORMATION FOR SEQ ID NO:3:- (i) SEQUENCE CHARACTERISTICS:#acids (A) LENGTH: 60 amino (B) TYPE: amino acid (C) STRANDEDNESS: single (D) TOPOLOGY: linear- (ii) MOLECULE TYPE: protein#ID NO:3: (xi) SEQUENCE DESCRIPTION: SEQ- Leu Asp Pro Val Asp Thr Pro Asn - # Pro Thr Arg Arg Lys Pro GlyLys# 15- Cys Pro Val Thr Tyr Gly Gln Cys - # Xaa Xaa Xaa Asn Pro Pro AsnPhe# 30- Cys Glu Xaa Asp Gly Gln Cys Lys - # Arg Asp Leu Lys Cys Cys XaaGly# 45- Xaa Cys Gly Lys Ser Cys Val Ser - # Pro Val Lys Xaa# 60- (2) INFORMATION FOR SEQ ID NO:4:- (i) SEQUENCE CHARACTERISTICS:#acids (A) LENGTH: 107 amino (B) TYPE: amino acid (C) STRANDEDNESS: single (D) TOPOLOGY: linear- (ii) MOLECULE TYPE: protein#ID NO:4: (xi) SEQUENCE DESCRIPTION: SEQ- Xaa Gly Lys Ser Phe Lys Ala Gly - # Val Cys Pro Pro Lys Lys SerAla# 15- Gln Cys Leu Xaa Tyr Lys Lys Pro - # Glu Cys Gln Ser Asp Trp GlnCys# 30- Pro Gly Lys Lys Arg Cys Cys Pro - # Asp Thr Cys Gly Ile Lys CysLeu# 45- Asp Pro Val Asp Thr Pro Asn Pro - # Thr Arg Arg Lys Pro Gly LysCys# 60- Pro Val Thr Tyr Gly Gln Cys Xaa - # Xaa Xaa Asn Pro Pro Asn PheCys# 80- Glu Xaa Asp Gly Gln Cys Lys Arg - # Asp Leu Lys Cys Cys Xaa GlyXaa# 95- Cys Gly Lys Ser Cys Val Ser Pro - # Val Lys Xaa# 105__________________________________________________________________________

Claims

1. An in vitro method for inhibiting retrovirus infection of CD4.sup.+ cells in a composition containing said cells comprising contacting said composition with an amount of a secretory leukocyte protease inhibitor sufficient to inhibit retrovirus infection of said cells, wherein said secretory leukocyte protease inhibitor comprises the amino acid sequence of a naturally-occurring secretory leukocyte protease inhibitor or a substitution analog comprising the amino acid sequence (SEQ ID NO:4):

Gly-Lys-Ser-Phe-Lys-Ala-Gly-Val-Cys-Pro-Pro-Tyr-Lys-Lys-Pro-Gln-Cys-Leu-R2Glu-Cys-Gln-Ser-Asp-Trp-Gln-Cys-Pro-Gly-Lys-Lys-Arg-Cys-Cys-Pro-Asp-Thr-Cys-Gly-Ile-Lys-Cys-Leu-Asp-Pro-Val-Asp-Thr-Pro-Asn-Pro-Thr-Arg-Arg-Lys-Pro-Gly-Lys-Cys-Pro-Val-Thr-Tyr-Gly-Gln-Cys-R8Asp-Gly-Pro-Asn-Phe-Cys-Glu-R4Gly-R6 -Lys-Arg-Asp-Leu-Lys-Cys-Cys-R5Cys-Gly-Lys-Ser-Cys-Val-Ser-Pro-Val-Lys-R7

wherein

R1 and R7 are the same or different and are selected from the group consisting of serine, alanine, or a substituted or unsubstituted amino acid residue:

R2, R3, R4, R5 and R6 are the same or different and are selected from the group consisting of methionine, valine, alanine, phenylalanine, tyrosine, tryptophan, lysine, glycine and arginine: and

R8 and R9 are the same or different and are selected from the group consisting of methionine, valine, alanine, phenylalanine, tyrosine, tryptophan, lysine, glycine, leucine and arginine.

2. The method according to claim 1, wherein the retrovirus is a human immunodeficiency deficiency virus (HIV).

3. The method according to claim 2, wherein the HIV is HIV-1.

4. The method of claim 1, wherein said secretory leukocyte protease inhibitor is used in combination with one or more antiviral or antibacterial agents.

5. The method of claim 1, wherein said substitution analog has phenylalanine at position R8.

6. The method of claim 1, wherein said substitution analog has glycine at position R2.

7. The method of claim 1, wherein said substitution analog has glycine at R8.

8. The method of claim 1, wherein said substitution analog has valine at position R8.

9. The method of claim 1, wherein said secretory leukocyte protease inhibitor is covalently-linked to polyethylene glycol.

10. The method of claim 1, wherein said cells are monocytes.

11. The method of claim 1, wherein said cells are T cells.

12. The method of claim 1, wherein each of R1 and R7 is a substituted or unsubstituted amino acid residue and R1 and R7 are the same or different.

13. A method for treating retrovirus infection comprising treating a patient with an amount of a secretory leukocyte protease inhibitor sufficient to inhibit retrovirus infection of CD4.sup.+ cells, wherein said secretory leukocyte protease inhibitor comprises the amino acid sequence of a naturally-occurring secretory leukocyte protease inhibitor or a substitution analog comprising the amino acid sequence (SEQ ID NO:4):

Gly-Lys-Ser-Phe-Lys-Ala-Gly-Val-Cys-Pro-Pro-Tyr-Lys-Lys-Pro-Gln-Cys-Leu-R2Glu-Cys-Gln-Ser-Asp-Trp-Gln-Cys-Pro-Gly-Lys-Lys-Arg-Cys-Cys-Pro-Asp-Thr-Cys-Gly-Ile-Lys-Cys-Leu-Asp-Pro-Val-Asp-Thr-Pro-Asn-Pro-Thr-Arg-Arg-Lys-Pro-Gly-Lys-Cys-Pro-Val-Thr-Tyr-Gly-Gln-Cys-R8Asp-Gly-Pro-Asn-Phe-Cys-Glu-R4Gly-R6 -Lys-Arg-Asp-Leu-Lys-Cys-Cys-R5Cys-Gly-Lys-Ser-Cys-Val-Ser-Pro-Val-Lys-R7

wherein

R1 and R7 are the same or different and are selected from the group consisting of serine, alanine or a substituted or unsubstituted amino acid residue;

R2, R3, R4, R5 and R6 are the same or different and are selected from the group consisting of methionine, valine, alanine, phenylalanine, tyrosine, tryptophan, lysine, glycine and arginine; and

R8 and R9 are the same or different and are selected from the group consisting of methionine, valine, alanine, phenylalanine, tyrosine, tryptophan, lysine, glycine, leucine and arginine.

14. The method according to claim 13, wherein the retrovirus is a human immunodeficiency virus (HIV).

15. The method according to claim 14, wherein the HIV is HIV-1.

16. The method of claim 13, wherein said secretory leukocyte protease inhibitor is administered intraperitoneally.

17. The method of claim 13, wherein said secretory leukocyte protease inhibitor is administered intravenously.

18. The method of claim 13, wherein said secretory leukocyte protease inhibitor is administered subcutaneously.

19. The method according to claim 13, wherein said substitution analog has phenylalanine at position R8.

20. The method according to claim 13, wherein said substitution analog has glycine at position R2.

21. The method according to claim 13, wherein said substitution analog has glycine at position R8.

22. The method according to claim 13, wherein said substitution analog has valine at position R8.

23. The method according to claim 13, further comprising administering at least one additional antiviral or antibacterial agent.

24. The method according to claim 13, wherein said secretory leukocyte protease inhibitor is covalently linked to polyethylene glycol.

25. The method of claim 13, wherein each of R1 and R7 is a substituted or unsubstituted amino acid residue and R1 and R7 are the same or different.