ISOLATED POLYNUCLEOTIDES AND POLYPEPTIDES, TRANSGENIC PLANTS COMPRISING SAME AND USES THEREOF IN IMPROVING ABIOTIC STRESS TOLERANCE, NITROGEN USE EFFICIENCY, BIOMASS, VIGOR OR YIELD OF PLANTS

FIELD AND BACKGROUND OF THE INVENTION

The present invention, in some embodiments thereof, relates to isolated polynucleotides and polypeptides, transgenic plants comprising same and uses thereof in improving abiotic stress tolerance, nitrogen use efficiency, biomass, vigor or yield of plants

Abiotic stress (ABST) is a collective term for numerous extreme environmental parameters such as drought, high or low salinity, high or low temperature/light, and nutrient imbalances. The major agricultural crops (corn, rice, wheat, canola and soybean) account for over half of total human caloric intake, giving their overall yield and quality vast importance. Abiotic stress causes more than 50% yield loss of the above mentioned major crops. Among the various abiotic stresses, drought is the major factor that limits crop productivity worldwide. Furthermore, drought is associated with increase susceptibility to various diseases. Abiotic-stress-induced dehydration or osmotic stress, in the form of reduced availability of water and disruption of turgor pressure, causes irreversible cellular damage. A water-limiting environment at various plant developmental stages may activate various physiological changes.

Water deficit, salinity and low/high temperatures are stresses that cause plant cellular dehydration, due to transpiration rate that exceeds water uptake. Drought is known to elicit a response in the plant that mainly affects root architecture, causing activation of plant metabolic pathways driven to maximize water assimilation. Improvement of root architecture, i.e. making branched and longer roots, allows the plant to reach water and nutrient/fertilizer deposits located deeper in the soil by an increase in soil coverage. Thus, genes governing enhancement of root architecture may be used to improve drought tolerance.

High salt levels, or salinity, of the soil acts similarly to drought; it prevents roots from extracting water and nutrients and thus reduces the availability of arable land and crop production worldwide, since none of the top five food crops can tolerate excessive salt. Salinity causes a water deficit which leads to osmotic stress (similar to freezing and drought stress) and critically damages biochemical processes. Large land areas throughout the world naturally have high salt levels and thus are currently uncultivable. In regions that rely heavily on agricultural production, soil salinity is a significant problem expected to worsen due to growing population and extreme climatic changes. Since salt accumulates in the upper soil layer where seeds are placed, and may interfere with their germination, salt tolerance is of particular importance early in a plant's lifecycle.

Temperature is a critical factor in germination of many crops. Seedlings as well as mature plants that are exposed to excess heat may experience heat shock, which may arise in various organs when transpiration is insufficient to overcome heat stress. Heat shock damages cellular structures and impairs membrane function and overall protein synthesis (except that of heat shock proteins). Heat stress often accompanies conditions of low water availability, such as drought, and the combined stress can fatally alter plant metabolism. Dehydration invokes survival strategies in plants that include structural (lower surface area) as well as cellular content (increase in oil and soluble material) modifications to prevent evaporation and water loss caused by heat, drought, or salinity.

There is great variability in responses to abiotic stress among different plant species, but differences also exist among varieties and cultivars within the same plant species. Certain plants are inherently more tolerant to abiotic stress than others, making their genotypes an attractive research subject for potential identification of drought associated genes. The response to any stress may involve both stress specific and common stress pathways, and drains energy from the plant, eventually resulting in lowered yield. Thus, distinguishing between the genes activated in each pathway and subsequent manipulation of only specific relevant genes could lead to a partial stress response without the parallel loss in yield.

With a growing world population, increasing demand for food, fuel and fiber, and a changing climate, agriculture faces unprecedented challenges. In general, shortage in water supply is one of the most severe global agricultural problems affecting plant growth and crop yield. To illustrate, large areas of cornfields in the United States may be affected by at least moderate drought in any given year. Excessive efforts are made to alleviate the harmful effects of desertification of the world's arable land. Farmers are seeking advanced, biotechnology-based solutions to enable them to obtain stable high yields and give them the potential to reduce irrigation costs or to grow crops in areas where potable water is a limiting factor. It should be noted that improved ABST will confer plants with improved vigor also under non-stress conditions, resulting in crops having improved biomass and/or yield.

Two major small RNA molecules, microRNAs (miRNAs) or small interfering RNAs (siRNAs), potently regulate specific down-regulation/silencing of a target gene, through RNA interference (RNAi). Both miRNAs and siRNAs are oligonucleotides (20-24 bps) processed from longer RNA precursors by Dicer-like ribonucleases, although the source of their precursors is different (i.e., local single RNA molecules with imperfect stem-loop structures for miRNA, and long, double-stranded precursors potentially from bimolecular duplexes for siRNA). Additional characteristics that differentiate miRNAs from siRNAs are their sequence conservation level between related organisms (high in miRNAs, low to non-existent in siRNAs), regulation of genes unrelated to their locus of origin (typical for miRNAs, infrequent in siRNAs) and the genetic requirements for their respective functions are somewhat dissimilar in many organisms. Despite all their differences, miRNAs and siRNAs are overall chemically and functionally similar and both are incorporated into silencing complexes, wherein they can guide post-transcriptional repression of multiple target genes, and thus function catalytically.

In contrast to the abundance of genes involved in the responses to abiotic stress in plants, there is limited information on small RNA molecules involved in plant response and adaptation to abiotic stress.

Related Background Art

WO 2011/067745

SUMMARY OF THE INVENTION

According to an aspect of some embodiments of the present invention there is provided a method of improving abiotic stress tolerance, nitrogen use efficiency, biomass, vigor or yield of a plant, the method comprising expressing within the plant an exogenous polynucleotide having a nucleic acid sequence at least 90% identical to SEQ ID NOs: 103, 101-102, 104-216, 223-227, 264-416, wherein said nucleic acid sequence is capable of regulating abiotic stress tolerance of the plant, thereby improving abiotic stress tolerance, nitrogen use efficiency, biomass, vigor or yield of the plant.

According to an aspect of some embodiments of the present invention there is provided a transgenic plant exogenously expressing a polynucleotide having a nucleic acid sequence at least 90% identical to SEQ ID NOs: 1-216, 223-227, 264-416, 615-626 or 639, wherein said nucleic acid sequence is capable of regulating abiotic stress tolerance of the plant.

According to some embodiments of the invention, said polynucleotide has a nucleic acid sequence selected from the group consisting of SEQ ID NOs: 1-216, 223-227, 264-416, 615-626 or 639.

According to some embodiments of the invention, said exogenous polynucleotide encodes a precursor of said nucleic acid sequence.

According to some embodiments of the invention, said precursor is at least 60% identical to SEQ ID NO: 217-222, 417-421 or 458-614.

According to some embodiments of the invention, said exogenous polynucleotide encodes a miRNA or a precursor thereof.

According to some embodiments of the invention, said exogenous polynucleotide encodes a siRNA.

According to some embodiments of the invention, said exogenous polynucleotide is selected from the group consisting of SEQ ID NO: 103, 101-102, 104-216, 217-222, 223-227, 264-416, 417-421 or 458-614.

According to an aspect of some embodiments of the present invention there is provided an isolated polynucleotide having a nucleic acid sequence at least 90% identical to SEQ ID NO: 16-113, 117-216, wherein said nucleic acid sequence is capable of regulating abiotic stress tolerance of a plant.

According to some embodiments of the invention, said nucleic acid sequence us as set forth in SEQ ID NO: 16-113, 117-216

According to some embodiments of the invention, said polynucleotide encodes a precursor of said nucleic acid sequence.

According to some embodiments of the invention, said polynucleotide encodes a miRNA or a precursor thereof.

According to some embodiments of the invention, said polynucleotide encodes a siRNA.

According to an aspect of some embodiments of the present invention there is provided a method of improving abiotic stress tolerance, nitrogen use efficiency, biomass, vigor or yield of a plant, the method comprising expressing within the plant an exogenous polynucleotide which downregulates an activity or expression of a gene encoding an RNAi molecule having a nucleic acid sequence at least 90% identical to a nucleic acid sequence selected from the group consisting of SEQ ID NOs: 1-100, 615-626 and 639, thereby improving abiotic stress tolerance, nitrogen use efficiency, biomass, vigor or yield of a plant.

According to an aspect of some embodiments of the present invention there is provided a transgenic plant exogenously expressing a polynucleotide which downregulates an activity or expression of a gene encoding an RNAi molecule having a nucleic acid sequence at least 90% identical to a nucleic acid sequence selected from the group consisting of SEQ ID NOs: 1-100, 615-626 and 639.

According to an aspect of some embodiments of the present invention there is provided an isolated polynucleotide which downregulates an activity or expression of a gene encoding an RNAi molecule having a nucleic acid sequence selected from the group consisting of SEQ ID NOs: 1-100, 615-626 and 639, 627-638 and 640.

According to some embodiments of the invention, said polynucleotide encodes a miRNA-Resistant Target as set forth in Tables 14-16.

According to some embodiments of the invention, said polynucleotide encoding miRNA-Resistant Target is as set forth in SEQ ID NO: 877-886, 893-913, 1226-1535.

According to some embodiments of the invention, said isolated polynucleotide encodes a target mimic as set forth in Tables 17-19.

According to some embodiments of the invention, said polynucleotide encoding said target mimic is as set forth in SEQ ID NO:1741-1815.

According to an aspect of some embodiments of the present invention there is provided a method of improving abiotic stress tolerance, nitrogen use efficiency, biomass, vigor or yield of a plant, the method comprising expressing within the plant an exogenous polynucleotide encoding a polypeptide having an amino acid sequence at least 80% homologous to SEQ ID NOs: 1861-1869, 1892-1915, 1921-1924, 1931-1939, 1952-1963, 2010-2014, 2327-2355, 2763-3040, 3044-3163, 3175-3269, 3313-3323, 3458-3944 or 3950-3969, wherein said polypeptide is capable of regulating abiotic stress tolerance of the plant, thereby improving abiotic stress tolerance, nitrogen use efficiency, biomass, vigor or yield of the plant.

According to an aspect of some embodiments of the present invention there is provided a transgenic plant exogenously expressing a polynucleotide encoding a polypeptide having an amino acid sequence at least 80% homologous to SEQ ID NOs: 1816-2014, 2183-2355, 2500-3969, wherein said polypeptide is capable of regulating nitrogen use efficiency of the plant.

According to an aspect of some embodiments of the present invention there is provided a nucleic acid construct comprising a polynucleotide encoding a polypeptide having an amino acid sequence at least 80% homologous to SEQ ID NOs: 1816-2014, 2183-2355, 2500-3969, wherein said polypeptide is capable of regulating abiotic stress tolerance of a plant, and wherein said polynucleotide is under a transcriptional control of a cis-acting regulatory element.

According to some embodiments of the invention, said polynucleotide is selected from the group consisting of SEQ ID NO: 2053-2061, 2080-2101, 2106-2109, 2111-2116, 2126-2136, 2178-2182, 2478-2499, 4185-4418, 4422-4527, 4539-4624, 4661-4670, 4787-5213 and 5219-5238.

According to some embodiments of the invention, said polypeptide is selected from the group consisting of SEQ ID NO: 1861-1869, 1892-1915, 1921-1924, 1931-1939, 1952-1963, 2010-2014, 2327-2355, 2763-3040, 3044-3163, 3175-3269, 3313-3323, 3458-3944 and 3950-3969.

According to an aspect of some embodiments of the present invention there is provided a method of improving abiotic stress tolerance, nitrogen use efficiency, biomass, vigor or yield of a plant, the method comprising expressing within the plant an exogenous polynucleotide which downregulates an activity or expression of a polypeptide having an amino acid sequence at least 80% homologous to SEQ ID NOs: 1816-1860, 1870-1891, 1916-1920, 1925-1930, 1940-1951, 1964-2009, 2183-2326, 2500-2762, 3041-3043, 3164-3174, 3270-3312, 3324-3457, 3945-3949, wherein said polypeptide is capable of regulating abiotic stress tolerance of the plant, thereby improving abiotic stress tolerance, nitrogen use efficiency, biomass, vigor or yield of the plant.

According to an aspect of some embodiments of the present invention there is provided a transgenic plant exogenously expressing a polynucleotide which downregulates an activity or expression of a polypeptide having an amino acid sequence at least 80% homologous to SEQ ID NOs: 1816-1860, 1870-1891, 1916-1920, 1925-1930, 1940-1951, 1964-2009, 2183-2326, 2500-2762, 3041-3043, 3164-3174, 3270-3312, 3324-3457, 3945-3979, wherein said polypeptide is capable of regulating abiotic stress tolerance of the plant.

According to an aspect of some embodiments of the present invention there is provided a nucleic acid construct comprising a polynucleotide which downregulates an activity or expression of a polypeptide having an amino acid sequence at least 80% homologous to SEQ ID NOs: 1816-1860, 1870-1891, 1916-1920, 1925-1930, 1940-1951, 1964-2009, 2183-2326, 2500-2762, 3041-3043, 3164-3174, 3270-3312, 3324-3457, 3945-3949, wherein said polypeptide is capable of regulating abiotic stress tolerance of a plant, said nucleic acid sequence being under the regulation of a cis-acting regulatory element.

According to some embodiments of the invention, said polynucleotide acts by a mechanism selected from the group consisting of sense suppression, antisense suppression, ribozyme inhibition, gene disruption.

According to some embodiments of the invention, said cis-acting regulatory element comprises a promoter.

According to some embodiments of the invention, said promoter comprises a tissue-specific promoter.

According to some embodiments of the invention, said tissue-specific promoter comprises a root specific promoter.

According to some embodiments of the invention, the method further comprises growing the plant under water deprivation conditions.

According to some embodiments of the invention, the method further comprises growing the plant under salinity stress.

According to some embodiments of the invention, the method further comprises growing the plant under high temperature stress.

According to some embodiments of the invention, the method further comprises growing the plant under abiotic stress.

According to some embodiments of the invention, said abiotic stress is selected from the group consisting of salinity, drought, water deprivation, flood, etiolation, low temperature, high temperature, heavy metal toxicity, anaerobiosis, nutrient deficiency, nutrient excess, atmospheric pollution and UV irradiation.

According to some embodiments of the invention, the plant is a dicotyledon.

According to some embodiments of the invention, the plant is a monocotyledon.

Unless otherwise defined, all technical and/or scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art to which the invention pertains. Although methods and materials similar or equivalent to those described herein can be used in the practice or testing of embodiments of the invention, exemplary methods and/or materials are described below. In case of conflict, the patent specification, including definitions, will control. In addition, the materials, methods, and examples are illustrative only and are not intended to be necessarily limiting.

BRIEF DESCRIPTION OF THE DRAWINGS

Some embodiments of the invention are herein described, by way of example only, with reference to the accompanying drawings. With specific reference now to the drawings in detail, it is stressed that the particulars shown are by way of example and for purposes of illustrative discussion of embodiments of the invention. In this regard, the description taken with the drawings makes apparent to those skilled in the art how embodiments of the invention may be practiced.

In the drawings:

FIG. 1 is a plasmid map of the binary vector pORE-E1, which can be used for plant transformation according to some embodiments of the present invention.

FIG. 2 is a schematic description of miRNA assay including two steps, stem-loop RT and real-time PCR. Stem-loop RT primers bind to at the 3′ portion of miRNA molecules and are reverse transcribed with reverse transcriptase. Then, the RT product is quantified using conventional TaqMan PCR that includes miRNA-specific forward primer and reverse primer. The purpose of tailed forward primer at 5′ is to increase its melting temperature (Tm) depending on the sequence composition of miRNA molecules (Slightly modified from Chen et al. 2005, Nucleic Acids Res 33(20):e179). FIGS. 3A-B are schematic illustrations of an artificial miRNA sequence design for predicted siRNA 55507 (SEQ ID NO: 102) on the backbone of ath-miR172a (SEQ ID NO: 453).

FIGS. 4A-B are schematic illustrations of an artificial miRNA sequence design for predicted siRNA 55937 (SEQ ID NO: 2) on the backbone of ath-miR319a (SEQ ID NO: 455).

DESCRIPTION OF SPECIFIC EMBODIMENTS OF THE INVENTION

Before explaining at least one embodiment of the invention in detail, it is to be understood that the invention is not necessarily limited in its application to the details set forth in the following description or exemplified by the Examples. The invention is capable of other embodiments or of being practiced or carried out in various ways.

A number of abnormal environment parameters such as drought, salinity, cold, freezing, high temperature, anoxia, high light intensity and nutrient imbalances etc. are collectively termed as abiotic stresses. Abiotic stresses lead to dehydration or osmotic stress through reduced availability of water for vital cellular functions and maintenance of turgor pressure. Stomata closure, reduced supply of CO₂and slower rate of biochemical reactions during prolonged periods of dehydration, high light intensity, high and low temperatures lead to high production of Reactive Oxygen Intermediates (ROI) in the chloroplasts causing irreversible cellular damage and photo inhibition.

Understanding the molecular mechanism for providing protection against biotic and abiotic stresses may lead to the identification of genes associated with stress tolerance. Optimum homeostasis is always a key to living organisms for adjusted environments.

While reducing the present invention to practice, the present inventors have uncovered dsRNA sequences that are differentially expressed in maize plants grown under abiotic stress conditions including, salt stress, heat stress and drought, versus maize plants grown under optimal conditions. Following extensive experimentation and screening the present inventors have identified double stranded RNA interfering (RNAi) molecules including siRNA and miRNA sequences that are upregulated or downregulated in roots and leaves, and suggest using same or sequences controlling same in the generation of transgenic plants having improved abiotic stress tolerance.

Each of the above mechanisms may affect water uptake as well as salt absorption and therefore embodiments of the invention further relate to enhancement of abiotic stress tolerance, nitrogen use efficiency, biomass, vigor or yield of the plant.

Thus, according to an aspect of the invention there is provided a method of improving abiotic stress tolerance, nitrogen use efficiency, biomass, vigor or yield of a plant, the method comprising expressing within the plant an exogenous polynucleotide having a nucleic acid sequence at least, 80%, 85%, 90%, 95% or even 100% identical to SEQ ID NOs: 101-216, 217-222, 223-227, 264-416 (Mature all upregulated sequences and homologs of Tables 1-8), wherein said nucleic acid sequence is capable of regulating abiotic stress tolerance of the plant, thereby improving abiotic stress tolerance, nitrogen use efficiency, biomass, vigor or yield of the plant

The phrase “abiotic stress” as used herein refers to any adverse effect on metabolism, growth, viability and/or reproduction of a plant. Abiotic stress can be induced by any of suboptimal environmental growth conditions such as, for example, water deficit or drought, flooding, freezing, low or high temperature, strong winds, heavy metal toxicity, anaerobiosis, high or low nutrient levels (e.g. nutrient deficiency), high or low salt levels (e.g. salinity), atmospheric pollution, high or low light intensities (e.g. insufficient light) or UV irradiation. Abiotic stress may be a short term effect (e.g. acute effect, e.g. lasting for about a week) or alternatively may be persistent (e.g. chronic effect, e.g. lasting for example 10 days or more). The present invention contemplates situations in which there is a single abiotic stress condition or alternatively situations in which two or more abiotic stresses occur.

According to an exemplary embodiment the abiotic stress refers to salinity.

According to another exemplary embodiment the abiotic stress refers to drought.

According to yet another exemplary embodiment the abiotic stress refers to high temperature.

As used herein the phrase “abiotic stress tolerance” or ABST refers to the ability of a plant to endure an abiotic stress without exhibiting substantial physiological or physical damage (e.g. alteration in metabolism, growth, viability and/or reproducibility of the plant).

It will be appreciated that since genes that affect abiotic stress tolerance often modulate any one of root architecture; plant metabolic pathways which may affect nitrogen absorption or localization; and plant surface permeability, it is also suggested that the biomolecular sequences (i.e., nucleic acid and amino acid sequences) of the present invention may also regulate nitrogen use efficiency of the plant.

As used herein the phrase “nitrogen use efficiency (NUE)” refers to a measure of crop production per unit of nitrogen fertilizer input. Fertilizer use efficiency (FUE) is a measure of NUE. Crop production can be measured by biomass, vigor or yield. The plant's nitrogen use efficiency is typically a result of an alteration in at least one of the uptake, spread, absorbance, accumulation, relocation (within the plant) and use of nitrogen absorbed by the plant. Improved abiotic stress tolerance or NUE is with respect to that of a non-transgenic plant (i.e., lacking the transgene of the transgenic plant) of the same species and of the same developmental stage and grown under the same conditions.

As used herein the phrase “nitrogen-limiting conditions” refers to growth conditions which include a level (e.g., concentration) of nitrogen (e.g., ammonium or nitrate) applied which is below the level needed for optimal plant metabolism, growth, reproduction and/or viability.

As used herein the term/phrase “biomass”, “biomass of a plant” or “plant biomass” refers to the amount (e.g., measured in grams of air-dry tissue) of a tissue produced from the plant in a growing season. An increase in plant biomass can be in the whole plant or in parts thereof such as aboveground (e.g. harvestable) parts, vegetative biomass, roots and/or seeds.

As used herein the term/phrase “vigor”, “vigor of a plant” or “plant vigor” refers to the amount (e.g., measured by weight) of tissue produced by the plant in a given time. Increased vigor could determine or affect the plant yield or the yield per growing time or growing area. In addition, early vigor (e.g. seed and/or seedling) results in improved field stand.

As used herein the term/phrase “yield”, “yield of a plant” or “plant yield” refers to the amount (e.g., as determined by weight or size) or quantity (e.g., numbers) of tissues or organs produced per plant or per growing season. Increased yield of a plant can affect the economic benefit one can obtain from the plant in a certain growing area and/or growing time.

According to an exemplary embodiment the yield is measured by cellulose content.

According to another exemplary embodiment the yield is measured by oil content.

According to another exemplary embodiment the yield is measured by protein content.

According to another exemplary embodiment, the yield is measured by seed number per plant or part thereof (e.g., kernel).

A plant yield can be affected by various parameters including, but not limited to, plant biomass; plant vigor; plant growth rate; seed yield; seed or grain quantity; seed or grain quality; oil yield; content of oil, starch and/or protein in harvested organs (e.g., seeds or vegetative parts of the plant); number of flowers (e.g. florets) per panicle (e.g. expressed as a ratio of number of filled seeds over number of primary panicles); harvest index; number of plants grown per area; number and size of harvested organs per plant and per area; number of plants per growing area (e.g. density); number of harvested organs in field; total leaf area; carbon assimilation and carbon partitioning (e.g. the distribution/allocation of carbon within the plant); resistance to shade; number of harvestable organs (e.g. seeds), seeds per pod, weight per seed; and modified architecture [such as increase stalk diameter, thickness or improvement of physical properties (e.g. elasticity)].

As used herein the term “improving” or “increasing” refers to at least about 2%, at least about 3%, at least about 4%, at least about 5%, at least about 10%, at least about 15%, at least about 20%, at least about 25%, at least about 30%, at least about 35%, at least about 40%, at least about 45%, at least about 50%, at least about 60%, at least about 70%, at least about 80%, at least about 90% or greater increase in nitrogen use efficiency, in tolerance to abiotic stress, in yield, in biomass or in vigor of a plant, as compared to a native or wild-type plants [i.e., plants not genetically modified to express the bio-molecules (e.g., polynucleotides) of the invention, e.g., a non-transformed plant of the same species and of the same developmental stage which is grown under the same growth conditions as the transformed plant].

Improved plant abiotic stress tolerance is translated in the field into harvesting similar quantities of yield, while growing on less than optimal conditions (e.g., salinity, heat, cold, drought etc.) or harvesting higher yield when growing under optimal growth conditions.

Improved plant nitrogen use efficiency is translated in the field into either harvesting similar quantities of yield, while implementing less fertilizers, or increased yields gained by implementing the same levels of fertilizers. Thus, improved NUE or FUE has a direct effect on plant yield in the field. Likewise, improved ABST refers to harvesting similar quantities of yield, while negating the need for growth under regulated conditions such as in a green-house or under irrigation.

The term “plant” as used herein encompasses whole plants, ancestors and progeny of the plants and plant parts, including seeds, shoots, stems, roots (including tubers), and isolated plant cells, tissues and organs. The plant may be in any form including suspension cultures, embryos, meristematic regions, callus tissue, leaves, gametophytes, sporophytes, pollen, and microspores.

As used herein the phrase “plant cell” refers to plant cells which are derived and isolated from disintegrated plant cell tissue or plant cell cultures.

As used herein the phrase “plant cell culture” refers to any type of native (naturally occurring) plant cells, plant cell lines and genetically modified plant cells, which are not assembled to form a complete plant, such that at least one biological structure of a plant is not present. Optionally, the plant cell culture of this aspect of the present invention may comprise a particular type of a plant cell or a plurality of different types of plant cells. It should be noted that optionally plant cultures featuring a particular type of plant cell may be originally derived from a plurality of different types of such plant cells.

Any commercially or scientifically valuable plant is envisaged in accordance with these embodiments of the invention. Plants that are particularly useful in the methods of the invention include all plants which belong to the super family Viridiplantae, in particular monocotyledonous and dicotyledonous plants including a fodder or forage legume, ornamental plant, food crop, tree, or shrub selected from the list comprising Acacia spp., Acer spp., Actinidia spp., Aesculus spp., Agathis australis, Albizia amara, Alsophila tricolor, Andropogon spp., Arachis spp, Areca catechu, Astelia fragrans, Astragalus cicer, Baikiaea plurijuga, Betula spp., Brassica spp., Bruguiera gymnorrhiza, Burkea africana, Butea frondosa, Cadaba farinosa, Calliandra spp, Camellia sinensis, Canna indica, Capsicum spp., Cassia spp., Centroema pubescens, Chacoomeles spp., Cinnamomum cassia, Coffea arabica, Colophospermum mopane, Coronillia varia, Cotoneaster serotina, Crataegus spp., Cucumis spp., Cupressus spp., Cyathea dealbata, Cyclonia oblonga, Cryptomeria japonica, Cymbopogon spp., Cynthea dealbata, Cyclonia oblonga, Dalbergia monetaria, Davallia divaricata, Desmodium spp., Dicksonia squarosa, Dibeteropogon amplectens, Dioclea spp, Dolichos spp., Dorycnium rectum, Echinochloa pyramidalis, Ehraffia spp., Eleusine coracana, Eragrestis spp., Erythrina spp., Eucalyptus spp., Euclea schimperi, Eulalia vi/losa, Pagopyrum spp., Feijoa sellowlana, Fragaria spp., Flemingia spp, Freycinetia banksli, Geranium thunbergii, GinAgo biloba, Glycine javanica, Gliricidia spp, Gossypium hirsutum, Grevillea spp., Guibourtia coleosperma, Hedysarum spp., Hemaffhia altissima, Heteropogon contoffus, Hordeum vulgare, Hyparrhenia rufa, Hypericum erectum, Hypeffhelia dissolute, Indigo incamata, Iris spp., Leptarrhena pyrolifolia, Lespediza spp., Lettuca spp., Leucaena leucocephala, Loudetia simplex, Lotonus bainesli, Lotus spp., Macrotyloma axillare, Malus spp., Manihot esculenta, Medicago saliva, Metasequoia glyptostroboides, Musa sapientum, Nicotianum spp., Onobrychis spp., Ornithopus spp., Oryza spp., Peltophorum africanum, Pennisetum spp., Persea gratissima, Petunia spp., Phaseolus spp., Phoenix canariensis, Phormium cookianum, Photinia spp., Picea glauca, Pinus spp., Pisum sativam, Podocarpus totara, Pogonarthria fleckii, Pogonaffhria squarrosa, Populus spp., Prosopis cineraria, Pseudotsuga menziesii, Pterolobium stellatum, Pyrus communis, Quercus spp., Rhaphiolepsis umbellata, Rhopalostylis sapida, Rhus natalensis, Ribes grossularia, Ribes spp., Robinia pseudoacacia, Rosa spp., Rubus spp., Salix spp., Schyzachyrium sanguineum, Sciadopitys vefficillata, Sequoia sempervirens, Sequoiadendron giganteum, Sorghum bicolor, Spinacia spp., Sporobolus fimbriatus, Stiburus alopecuroides, Stylosanthos humilis, Tadehagi spp, Taxodium distichum, Themeda triandra, Trifolium spp., Triticum spp., Tsuga heterophylla, Vaccinium spp., Vicia spp., Vitis vinifera, Watsonia pyramidata, Zantedeschia aethiopica, Zea mays, amaranth, artichoke, asparagus, broccoli, Brussels sprouts, cabbage, canola, carrot, cauliflower, celery, collard greens, flax, kale, lentil, oilseed rape, okra, onion, potato, rice, soybean, straw, sugar beet, sugar cane, sunflower, tomato, squash tea, maize, wheat, barley, rye, oat, peanut, pea, lentil and alfalfa, cotton, rapeseed, canola, pepper, sunflower, tobacco, eggplant, eucalyptus, a tree, an ornamental plant, a perennial grass and a forage crop. Alternatively algae and other non-Viridiplantae can be used for the methods of the present invention.

According to some embodiments of the invention, the plant used by the method of the invention is a crop plant including, but not limited to, cotton, Brassica vegetables, oilseed rape, sesame, olive tree, palm oil, banana, wheat, corn or maize, barley, alfalfa, peanuts, sunflowers, rice, oats, sugarcane, soybean, turf grasses, barley, rye, sorghum, sugar cane, chicory, lettuce, tomato, zucchini, bell pepper, eggplant, cucumber, melon, watermelon, beans, hibiscus, okra, apple, rose, strawberry, chile, garlic, pea, lentil, canola, mums, arabidopsis, broccoli, cabbage, beet, quinoa, spinach, squash, onion, leek, tobacco, potato, sugarbeet, papaya, pineapple, mango, Arabidopsis thaliana, and also plants used in horticulture, floriculture or forestry, such as, but not limited to, poplar, fir, eucalyptus, pine, an ornamental plant, a perennial grass and a forage crop, coniferous plants, moss, algae, as well as other plants listed in World Wide Web(dot) nationmaster(dot)com/encyclopedia/Plantae.

According to a specific embodiment of the present invention, the plant comprises corn.

According to a specific embodiment of the present invention, the plant comprises sorghum.

As used herein, the phrase “exogenous polynucleotide” refers to a heterologous nucleic acid sequence which may not be naturally expressed within the plant or which overexpression in the plant is desired. The exogenous polynucleotide may be introduced into the plant in a stable or transient manner, so as to produce a ribonucleic acid (RNA) molecule. It should be noted that the exogenous polynucleotide may comprise a nucleic acid sequence which is identical or partially homologous to an endogenous nucleic acid sequence of the plant.

As mentioned the present teachings are based on the identification of RNA interfering molecular sequences (dsRNA) which modulate abiotic stress tolerance of plants.

According to some embodiments of the present aspect of the invention, the exogenous polynucleotide encodes an RNA interfering molecule.

Since its initial implementation, remarkable progress has been made in plant genetic engineering, and successful enhancements of commercially important crop plants have been reported (e.g., corn, cotton, soybean, canola, tomato). RNA interference (RNAi) is a remarkably potent technique and has steadily been established as the leading method for specific down-regulation/silencing of a target gene, through manipulation of one of two small RNA molecules, microRNAs (miRNAs) or small interfering RNAs (siRNAs). Both miRNAs and siRNAs are oligonucleotides (20-24 bps, i.e., the mature molecule) processed from longer RNA precursors by Dicer-like ribonucleases, although the source of their precursors is different (i.e., local single RNA molecules with imperfect stem-loop structures for miRNA, and long, double-stranded precursors potentially from bimolecular duplexes for siRNA). Additional characteristics that differentiate miRNAs from siRNAs are their sequence conservation level between related organisms (high in miRNAs, low to non-existent in siRNAs), regulation of genes unrelated to their locus of origin (typical for miRNAs, infrequent in siRNAs) and the genetic requirements for their respective functions are somewhat dissimilar in many organisms (Jones-Rhoades et al., 2006, Ann Rev Plant Biol 57:19-53). Despite all their differences, miRNAs and siRNAs are overall chemically and functionally similar and both are incorporated into silencing complexes, wherein they can guide post-transcriptional repression of multiple target genes, and thus function catalytically. Thus, the exogenous polynucleotide encodes a dsRNA interfering molecule or a precursor thereof.

According to some embodiments the exogenous polynucleotide encodes a miRNA or a precursor thereof.

According to other embodiments the exogenous polynucleotide encodes a siRNA or a precursor thereof.

As used herein, the phrase “siRNA” (also referred to herein interchangeably as “small interfering RNA” or “silencing RNA”, is a class of double-stranded RNA molecules, 20-25 nucleotides in length. The most notable role of siRNA is its involvement in the RNA interference (RNAi) pathway, where it interferes with the expression of a specific gene.

The siRNA precursor relates to a long dsRNA structure (at least 90% complementarity) of at least 30 bp.

As used herein, the phrase “microRNA (also referred to herein interchangeably as “miRNA” or “miR”) or a precursor thereof” refers to a microRNA (miRNA) molecule acting as a post-transcriptional regulator. Typically, the miRNA molecules are RNA molecules of about 20 to 22 nucleotides in length which can be loaded into a RISC complex and which direct the cleavage of another RNA molecule, wherein the other RNA molecule comprises a nucleotide sequence essentially complementary to the nucleotide sequence of the miRNA molecule.

Typically, a miRNA molecule is processed from a “pre-miRNA” or as used herein a precursor of a pre-miRNA molecule by proteins, such as DCL proteins, present in any plant cell and loaded onto a RISC complex where it can guide the cleavage of the target RNA molecules.

Pre-microRNA molecules are typically processed from pri-microRNA molecules (primary transcripts). The single stranded RNA segments flanking the pre-microRNA are important for processing of the pri-miRNA into the pre-miRNA. The cleavage site appears to be determined by the distance from the stem-ssRNA junction (Han et al. 2006, Cell 125, 887-901, 887-901).

As used herein, a “pre-miRNA” molecule is an RNA molecule of about 100 to about 200 nucleotides, preferably about 100 to about 130 nucleotides which can adopt a secondary structure comprising a double stranded RNA stem and a single stranded RNA loop (also referred to as “hairpin”) and further comprising the nucleotide sequence of the miRNA (and its complement sequence) in the double stranded RNA stem. According to a specific embodiment, the miRNA and its complement are located about 10 to about 20 nucleotides from the free ends of the miRNA double stranded RNA stem. The length and sequence of the single stranded loop region are not critical and may vary considerably, e.g. between 30 and 50 nt in length. The complementarity between the miRNA and its complement need not be perfect and about 1 to 3 bulges of unpaired nucleotides can be tolerated. The secondary structure adopted by an RNA molecule can be predicted by computer algorithms conventional in the art such as mFOLD. The particular strand of the double stranded RNA stem from the pre-miRNA which is released by DCL activity and loaded onto the RISC complex is determined by the degree of complementarity at the 5′ end, whereby the strand which at its 5′ end is the least involved in hydrogen bounding between the nucleotides of the different strands of the cleaved dsRNA stem is loaded onto the RISC complex and will determine the sequence specificity of the target RNA molecule degradation. However, if empirically the miRNA molecule from a particular synthetic pre-miRNA molecule is not functional (because the “wrong” strand is loaded on the RISC complex), it will be immediately evident that this problem can be solved by exchanging the position of the miRNA molecule and its complement on the respective strands of the dsRNA stem of the pre-miRNA molecule. As is known in the art, binding between A and U involving two hydrogen bounds, or G and U involving two hydrogen bounds is less strong that between G and C involving three hydrogen bounds. Exemplary hairpin sequences are provided in Tables 1-8, below.

Naturally occurring miRNA molecules may be comprised within their naturally occurring pre-miRNA molecules but they can also be introduced into existing pre-miRNA molecule scaffolds by exchanging the nucleotide sequence of the miRNA molecule normally processed from such existing pre-miRNA molecule for the nucleotide sequence of another miRNA of interest. The scaffold of the pre-miRNA can also be completely synthetic. Likewise, synthetic miRNA molecules may be comprised within, and processed from, existing pre-miRNA molecule scaffolds or synthetic pre-miRNA scaffolds. Some pre-miRNA scaffolds may be preferred over others for their efficiency to be correctly processed into the designed microRNAs, particularly when expressed as a chimeric gene wherein other DNA regions, such as untranslated leader sequences or transcription termination and polyadenylation regions are incorporated in the primary transcript in addition to the pre-microRNA.

According to the present teachings, the dsRNA molecules may be naturally occurring or synthetic.

Basically, siRNA and miRNA behave the same. Each can cleave perfectly complementary mRNA targets and decrease the expression of partially complementary targets.

Thus, the present teachings contemplate expressing an exogenous polynucleotide having a nucleic acid sequence at least 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98% 99% or 100% identical to SEQ ID NOs. 101-216, 217-222, 223-227, 264-416 (Tables 1-8), provided that they regulate abiotic stress tolerance (e.g., heat stress, drought or salinity). Assays for testing the efficacy of transgenes on abiotic stress tolerance are further described hereinbelow.

Alternatively or additionally, the present teachings contemplate expressing an exogenous polynucleotide having a nucleic acid sequence at least 65%, 50%, 75%, 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98% 99% or 100% identical to SEQ ID NOs. 217-222, 417-421, 458-614 (hairpin sequences of Tables 1-8 representing the core maize genes which were upregulated), provided that they regulate abiotic stress tolerance (e.g., heat stress, drought or salinity).

Tables 1-8 below illustrate exemplary miRNA sequences and precursors thereof which over expression are associated with modulation of abiotic stress tolerance.

For example, dsRNA sequences which are up-regulated during salinity stress are listed in Tables 3, 4 and 7.

dsRNA sequences which are up-regulated during heat stress are listed in Tables 5 and 8.

dsRNA sequences which are up-regulated during drought are listed in Tables 1, 2 and 6.

Likewise, Tables 1-8 provide similarly acting siRNA sequences.

The present invention envisages the use of homologous and orthologous sequences of the above RNA interfering molecules. At the precursor level use of homologous sequences can be done to a much broader extend. Thus, in such precursor sequences the degree of homology may be lower in all those sequences not including the mature miRNA or siRNA segment therein.

As used herein, the phrase “stem-loop precursor” refers to a stem loop precursor RNA structure from which the miRNA can be processed. In the case of siRNA, the precursor is typically devoid of a stem-loop structure.

As used herein, a “pre-miRNA” molecule is an RNA molecule of about 100 to about 200 nucleotides, preferably about 100 to about 130 nucleotides which can adopt a secondary structure comprising a double stranded RNA stem and a single stranded RNA loop (also referred to as “hairpin”) and further comprising the nucleotide sequence of the miRNA (and its complement sequence) in the double stranded RNA stem. According to a specific embodiment, the miRNA and its complement are located about 10 to about 20 nucleotides from the free ends of the miRNA double stranded RNA stem. The length and sequence of the single stranded loop region are not critical and may vary considerably, e.g. between 30 and 50 nt in length. The complementarity between the miRNA and its complement need not be perfect and about 1 to 3 bulges of unpaired nucleotides can be tolerated. The secondary structure adopted by an RNA molecule can be predicted by computer algorithms conventional in the art such as mFOLD. The particular strand of the double stranded RNA stem from the pre-miRNA which is released by DCL activity and loaded onto the RISC complex is determined by the degree of complementarity at the 5′ end, whereby the strand which at its 5′ end is the least involved in hydrogen bonding between the nucleotides of the different strands of the cleaved dsRNA stem is loaded onto the RISC complex and will determine the sequence specificity of the target RNA molecule for degradation. However, if empirically the miRNA molecule from a particular synthetic pre-miRNA molecule is not functional (because the “wrong” strand is loaded on the RISC complex), it will be immediately evident that this problem can be solved by exchanging the position of the miRNA molecule and its complement on the respective strands of the dsRNA stem of the pre-miRNA molecule. As is known in the art, binding between A and U involving two hydrogen bonds, or G and U involving two hydrogen bonds is less strong than between G and C involving three hydrogen bonds.

Thus, according to a specific embodiment, the exogenous polynucleotide encodes a stem-loop precursor of the nucleic acid sequence. Such a stem-loop precursor can be at least about 60%, at least about 65%, at least about 70%, at least about 75%, at least about 80%, at least about 85%, at least about 90%, at least about 95% or more identical to SEQ ID NOs: 417-421, 458-614 (homolog precursors which are upregulated as in Tables 1-8), provided that it regulates abiotic stress tolerance (e.g., drought, salinity or heat stress).

Identity (e.g., percent identity) can be determined using any homology comparison software, including for example, the BlastN software of the National Center of Biotechnology Information (NCBI) such as by using default parameters.

According to some embodiments of the invention, the term “homology” or “homologous” refers to identity of two or more nucleic acid sequences; or identity of two or more amino acid sequences.

Homologous sequences include both orthologous and paralogous sequences. The term “paralogous” relates to gene-duplications within the genome of a species leading to paralogous genes. The term “orthologous” relates to homologous genes in different organisms due to ancestral relationship.

One option to identify orthologues in monocot plant species is by performing a reciprocal blast search. This may be done by a first blast involving blasting the sequence-of-interest against any sequence database, such as the publicly available NCBI database which may be found at: Hypertext Transfer Protocol://World Wide Web(dot) ncbi(dot)nlm(dot)nih(dot)gov. The blast results may be filtered. The full-length sequences of either the filtered results or the non-filtered results are then blasted back (second blast) against the sequences of the organism from which the sequence-of-interest is derived. The results of the first and second blasts are then compared. An orthologue is identified when the sequence resulting in the highest score (best hit) in the first blast identifies in the second blast the query sequence (the original sequence-of-interest) as the best hit. Using the same rational a paralogue (homolog to a gene in the same organism) is found. In case of large sequence families, the ClustalW program may be used [Hypertext Transfer Protocol://World Wide Web(dot)ebi(dot)ac(dot) uk/Tools/clustalw2/index(dot)html], followed by a neighbor-joining tree (Hypertext Transfer Protocol://en(dot)wikipedia(dot)org/wiki/Neighbor-joining) which helps visualizing the clustering.

The miRNA or precursor sequence can be provided to the plant as naked RNA or expressed from a nucleic acid expression construct, where it is operaly linked to a regulatory sequence.

Interestingly, while screening for RNAi regulatory sequences, the present inventors have identified a number of miRNA and siRNA sequences which have never been described before.

Thus, according to an aspect of the invention there is provided an isolated polynucleotide having a nucleic acid sequence at least 80%, 85% 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98% 99% or 100% identical to SEQ ID NO: 16-113, 117-216 (Tables 1-8 predicted dsRNA which are either upregulated or downregulated), wherein said nucleic acid sequence is capable of regulating abiotic stress tolerance of a plant (e.g., salinity, drought or heat stress).

According to a specific embodiment, the isolated polynucleotide encodes a stem-loop precursor of the nucleic acid sequence.

According to a specific embodiment, the stem-loop precursor is at least about 60%, at least about 65%, at least about 70%, at least about 75%, at least about 80%, at least about 85%, at least about 90%, at least about 95% or more identical to the precursor sequence, provided that it is capable of regulating abiotic stress tolerance of a plant (e.g., salinity, drought or heat stress).

According to a specific embodiment, the stem-loop precursor is selected from the group of precursor sequences of SEQ ID NOs: 101-113 and 117-216 (mature of predicted upregulated).

According to a specific embodiment, the stem-loop precursor is selected from the group of precursor sequences of SEQ ID NOs: 16-100.

As mentioned, the present inventors have also identified RNAi sequences which are down regulated under abiotic stress conditions (e.g., salinity, drought or heat stress).

Thus, according to an aspect of the invention there is provided a method of improving abiotic stress tolerance, nitrogen use efficiency, biomass, vigor or yield of a plant, the method comprising expressing within the plant an exogenous polynucleotide which downregulates an activity or expression of a gene encoding an RNAi molecule having a nucleic acid sequence at least 90% homologous to the sequence selected from the group consisting of SEQ ID NOs: 1-100, 615-626, 639 (Tables 1-8 MATURE DOWN-REGULATED), thereby improving, abiotic stress tolerance, nitrogen use efficiency, biomass, vigor or yield of a plant. Precursor hairpin sequences of those miRs are provided in SEQ ID NOs: 627-638 and 640 and homologous sequences (i.e., at least 60%, at least about 65%, at least about 70%, at least about 75%, at least about 80%, at least about 85%, at least about 90%, at least about 95% or more identical to the precursor sequence).

There are various approaches to down regulate RNAi sequences.

As used herein the term “down-regulation” refers to reduced activity or expression of the dsRNA (at least 10%, 20%, 30%, 50%, 60%, 70%, 80%, 90% or 100% reduction in activity or expression) as compared to its activity or expression in a plant of the same species and the same developmental stage not expressing the exogenous polynucleotide.

Nucleic acid agents that down-regulate miR activity include, but are not limited to, a target mimic, a micro-RNA resistant gene and a miRNA inhibitor.

The target mimic or micro-RNA resistant target is essentially complementary to the microRNA provided that one or more of following mismatches are allowed:

(a) a mismatch between the nucleotide at the 5′ end of the microRNA and the corresponding nucleotide sequence in the target mimic or micro-RNA resistant target;

(b) a mismatch between any one of the nucleotides in position 1 to position 9 of the microRNA and the corresponding nucleotide sequence in the target mimic or micro-RNA resistant target; or

(c) three mismatches between any one of the nucleotides in position 12 to position 21 of the microRNA and the corresponding nucleotide sequence in the target mimic or micro-RNA resistant target provided that there are no more than two consecutive mismatches.

The target mimic RNA is essentially similar to the target RNA modified to render it resistant to miRNA induced cleavage, e.g. by modifying the sequence thereof such that a variation is introduced in the nucleotide of the target sequence complementary to the nucleotides 10 or 11 of the miRNA resulting in a mismatch.

Alternatively, a microRNA-resistant target may be implemented. Thus, a silent mutation may be introduced in the microRNA binding site of the target gene so that the DNA and resulting RNA sequences are changed in a way that prevents microRNA binding, but the amino acid sequence of the protein is unchanged. Thus, a new sequence can be synthesized instead of the existing binding site, in which the DNA sequence is changed, resulting in lack of miRNA binding to its target.

Tables 14-19 below provide non-limiting examples of target mimics and target resistant sequences that can be used to down-regulate the activity of the miRs/siRNAs of the invention.

According to a specific embodiment, the target mimic or micro-RNA resistant target is linked to the promoter naturally associated with the pre-miRNA recognizing the target gene and introduced into the plant cell. In this way, the miRNA target mimic or micro-RNA resistant target RNA will be expressed under the same circumstances as the miRNA and the target mimic or micro-RNA resistant target RNA will substitute for the non-target mimic/micro-RNA resistant target RNA degraded by the miRNA induced cleavage.

Non-functional miRNA alleles or miRNA resistant target genes may also be introduced by homologous recombination to substitute the miRNA encoding alleles or miRNA sensitive target genes.

While further reducing the present invention to practice, the present inventors have uncovered through extensive experimentation and screening genes that are targeted by the dsRNA sequences of the present teachings and suggest overexpressing these genes or sequences controlling same in the generation of transgenic plants having improved agricultural traits.

Thus, according to an aspect of the invention there is provided a method of improving abiotic stress tolerance, nitrogen use efficiency, biomass, vigor or yield of a plant, the method comprising expressing within the plant an exogenous polynucleotide encoding a polypeptide having an amino acid sequence at least 80% homologous to SEQ ID NOs: 1861-1869, 1892-1915, 1921-1924, 1931-1939, 1952-1963, 2010-2014, 2327-2355, 2763-3040, 3044-3163, 3175-3269, 3313-3323, 3458-3944 or 3950-3969 (targets of down-regulated miRs of Tables 1-8), wherein said polypeptide is capable of regulating abiotic stress tolerance of the plant, thereby improving abiotic stress tolerance, nitrogen use efficiency, biomass, vigor or yield of the plant.

Generally, the tables provided in the Examples section are to be considered an integral part of the specification.

As used herein a “target gene” refers to a gene that is processed by microRNA or siRNA activity. Typically the gene encodes a polypeptide which expression is downregulated due to microRNA/siRNA processing.

Target genes are typically identified using the WMD3 website (http://wmd3dotweigelworlddotorg/).

As mentioned, the method of the present invention is performed by expressing within a plant an exogenous polynucleotide encoding a target gene of the RNA interfering molecules uncovered by the present inventors, as explained below.

As used herein, the phrase “expressing within the plant an exogenous polynucleotide” refers to upregulating the expression level of an exogenous polynucleotide within the plant e.g., by introducing the exogenous polynucleotide into a plant or plant cell and expressing by recombinant means, as described in detail hereinbelow.

As used herein “expressing” refers to expression at the mRNA level (e.g., in case the target gene expresses an mRNA product but no protein or in the case of expressing the dsRNA) or at the polypeptide level of the desired exogenous polynucleotide.

As used herein, the phrase “exogenous polynucleotide” refers to a heterologous nucleic acid sequence which may not be naturally expressed within the plant or which overexpression in the plant is desired (i.e., overexpression of an endogenous gene). The exogenous polynucleotide may be introduced into the plant in a stable or transient manner, so as to produce a ribonucleic acid (RNA) molecule and/or a polypeptide molecule. The exogenous polynucleotide may comprise a nucleic acid sequence which is identical or partially homologous to an endogenous nucleic acid sequence expressed within the plant.

The term “endogenous” as used herein refers to any polynucleotide or polypeptide which is present and/or naturally expressed within a plant or a cell thereof.

As used herein the term “polynucleotide” refers to a single or double stranded nucleic acid sequence which is isolated and provided in the form of an RNA sequence, a complementary polynucleotide sequence (cDNA), a genomic polynucleotide sequence (e.g. sequence isolated from a chromosome) and/or a composite polynucleotide sequences (e.g., a combination of the above). This term includes polynucleotides and/or oligonucleotides derived from naturally occurring nucleic acid molecules (e.g., RNA or DNA), synthetic polynucleotide and/or oligonucleotide molecules composed of naturally occurring bases, sugars, and covalent internucleoside linkages (e.g., backbone), as well as synthetic polynucleotides and/or oligonucleotides having non-naturally occurring portions, which function similarly to the respective naturally occurring portions.

The term “isolated” refers to at least partially separated from the natural environment e.g., from a plant cell.

Nucleic acid sequences of the polypeptides of some embodiments of the invention may be optimized for expression in a specific plant host. Examples of such sequence modifications include, but are not limited to, an altered G/C content to more closely approach that typically found in the plant species of interest, and the removal of codons atypically found in the plant species commonly referred to as codon optimization.

The phrase “codon optimization” refers to the selection of appropriate DNA nucleotides for use within a structural gene or fragment thereof that approaches codon usage within the plant of interest. Therefore, an optimized gene or nucleic acid sequence refers to a gene in which the nucleotide sequence of a native or naturally occurring gene has been modified in order to utilize statistically-preferred or statistically-favored codons within the plant. The nucleotide sequence typically is examined at the DNA level and the coding region optimized for expression in the plant species determined using any suitable procedure, for example as described in Sardana et al. (1996, Plant Cell Reports 15:677-681). In this method, the standard deviation of codon usage, a measure of codon usage bias, may be calculated by first finding the squared proportional deviation of usage of each codon of the native gene relative to that of highly expressed plant genes, followed by a calculation of the average squared deviation. The formula used is: 1 SDCU=n=1N[(Xn−Yn)/Yn]2/N, where Xn refers to the frequency of usage of codon n in highly expressed plant genes, where Yn to the frequency of usage of codon n in the gene of interest and N refers to the total number of codons in the gene of interest. A table of codon usage from highly expressed genes of dicotyledonous plants is compiled using the data of Murray et al. (1989, Nuc Acids Res. 17:477-498).

One method of optimizing the nucleic acid sequence in accordance with the preferred codon usage for a particular plant cell type is based on the direct use, without performing any extra statistical calculations, of codon optimization tables such as those provided on-line at the Codon Usage Database through the NIAS (National Institute of Agrobiological Sciences) DNA bank in Japan (www.kazusa.or.jp/codon/). The Codon Usage Database contains codon usage tables for a number of different species, with each codon usage table having been statistically determined based on the data present in Genbank.

By using the above tables to determine the most preferred or most favored codons for each amino acid in a particular species (for example, rice), a naturally-occurring nucleotide sequence encoding a protein of interest can be codon optimized for that particular plant species. This is effected by replacing codons that may have a low statistical incidence in the particular species genome with corresponding codons, in regard to an amino acid, that are statistically more favored. However, one or more less-favored codons may be selected to delete existing restriction sites, to create new ones at potentially useful junctions (5′ and 3′ ends to add signal peptide or termination cassettes, internal sites that might be used to cut and splice segments together to produce a correct full-length sequence), or to eliminate nucleotide sequences that may negatively effect mRNA stability or expression.

The naturally-occurring encoding nucleotide sequence may already, in advance of any modification, contain a number of codons that correspond to a statistically-favored codon in a particular plant species. Therefore, codon optimization of the native nucleotide sequence may comprise determining which codons, within the native nucleotide sequence, are not statistically-favored with regards to a particular plant, and modifying these codons in accordance with a codon usage table of the particular plant to produce a codon optimized derivative. A modified nucleotide sequence may be fully or partially optimized for plant codon usage provided that the protein encoded by the modified nucleotide sequence is produced at a level higher than the protein encoded by the corresponding naturally occurring or native gene. Construction of synthetic genes by altering the codon usage is described in for example PCT Patent Application 93/07278.

Target genes which are contemplated according to the present teachings are provided in the polynucleotide sequences encoding polypeptides which comprise amino acid sequences as set forth in SEQ ID NO:1816-2014, 2183-2355, 2501-3970. However the present teachings also relate to orthologs or homologs at least about 60%, at least about 65%, at least about 70%, at least about 75%, at least about 80%, at least about 85%, at least about 90%, or at least about 95% or more identical or similar to SEQ ID NO: 1816-2014, 2183-2355, 2500-3969. Parameters for determining the level of identity are provided hereinbelow.

Alternatively or additionally, target genes which are contemplated according to the present teachings are provided in the polynucleotide sequences which comprise nucleic acid sequences as set forth in SEQ ID NO: 2015-2182, 2356-2499, 3970-5236. However the present teachings also relate to orthologs or homologs at least about 60%, at least about 65%, at least about 70%, at least about 75%, at least about 80%, at least about 85%, at least about 90%, or at least about 95% or more identical or similar to SEQ ID NO: 2015-2182, 2356-2499, 3970-5236 (Tables 20-22).

Homology (e.g., percent homology, identity+similarity) can be determined using any homology comparison software, including for example, the TBLASTN software of the National Center of Biotechnology Information (NCBI) such as by using default parameters, when starting from a polypeptide sequence; or the tBLASTX algorithm (available via the NCBI) such as by using default parameters, which compares the six-frame conceptual translation products of a nucleotide query sequence (both strands) against a protein sequence database.

According to some embodiments of the invention, the term “homology” or “homologous” refers to identity of two or more nucleic acid sequences; or identity of two or more amino acid sequences.

As mentioned the present inventors have also identified genes which down-regulation may be done in order to improve their NUE, biomass, vigor, yield and abiotic stress tolerance.

Thus, according to an aspect of the invention there is provided a method of improving abiotic stress tolerance, nitrogen use efficiency, biomass, vigor or yield of a plant, the method comprising expressing within the plant an exogenous polynucleotide which downregulates an activity or expression of a polypeptide having an amino acid sequence at least 80%, 85%, 90%, 95%, or 100% homologous to SEQ ID NOs: 1816-1860, 1870-1891, 1916-1920, 1925-1930, 1940-1951, 1964-2009, 2183-2326, 2500-2762, 3041-3043, 3164-3174, 3270-3312, 3324-3457, 3945-3949 (targets of upregulated miRs shown in Tables 20-22), wherein said polypeptide is capable of regulating abiotic stress tolerance of the plant, thereby improving abiotic stress tolerance, nitrogen use efficiency, biomass, vigor or yield of the plant.

Down regulation of activity or expression is by at least 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90% or even complete (100%) loss of activity or expression. Assays for measuring gene expression can be effected at the protein level (e.g., Western blot, ELISA) or at the mRNA level such as by RT-PCR.

According to a specific embodiment the amino acid sequence of the target gene is as set forth in SEQ ID NOs: 1816-1860, 1870-1891, 1916-1920, 1925-1930, 1940-1951, 1964-2009, 2183-2326, 2500-2762, 3041-3043, 3164-3174, 3270-3312, 3324-3457, 3945-3949 (targets of upregulated miRs, Tables 20-22).

Alternatively or additionally, the amino acid sequence of the target gene is encoded by a polynucleotide sequence as set forth in SEQ ID NOs: 2015-2052, 2062-2079, 2102-2105, 2110, 2117-2125, 2137-2177, 2356-2477, 3970-4184, 4421-4421, 4528-4538, 4625-4660, 4671-4786, 5214-5218 (targets of upregulated miRs, Tables 20-22).

Examples of polynucleotide downregulating agents that inhibit (also referred to herein as inhibitors or nucleic acid agents) the expression of a target gene are given below.

1. Polynucleotide-Based Inhibition of Gene Expression.

It will be appreciated, that any of these methods when specifically referring to downregulating expression/activity of the target genes can be used, at least in part, to downregulate expression or activity of endogenous RNA molecules.

i. Sense Suppression/Cosuppression

In some embodiments of the invention, inhibition of the expression of target gene may be obtained by sense suppression or cosuppression. For cosuppression, an expression cassette is designed to express an RNA molecule corresponding to all or part of a messenger RNA encoding a target gene in the “sense” orientation. Over-expression of the RNA molecule can result in reduced expression of the native gene. Accordingly, multiple plant lines transformed with the cosuppression expression cassette are screened to identify those that show the greatest inhibition of target gene expression.

The polynucleotide used for cosuppression may correspond to all or part of the sequence encoding the target gene, all or part of the 5′ and/or 3′ untranslated region of a target transcript, or all or part of both the coding sequence and the untranslated regions of a transcript encoding the target gene. In some embodiments where the polynucleotide comprises all or part of the coding region for the target gene, the expression cassette is designed to eliminate the start codon of the polynucleotide so that no protein product will be transcribed.

Cosuppression may be used to inhibit the expression of plant genes to produce plants having undetectable protein levels for the proteins encoded by these genes. See, for example, Broin, et al., (2002) Plant Cell 15:1517-1532. Cosuppression may also be used to inhibit the expression of multiple proteins in the same plant. Methods for using cosuppression to inhibit the expression of endogenous genes in plants are described in Flavell, et al., (1995) Proc. Natl. Acad. Sci. USA 91:3590-3596; Jorgensen, et al., (1996) Plant Mol. Biol. 31:957-973; Johansen and Carrington, (2001) Plant Physiol. 126:930-938; Broin, et al., (2002) Plant Cell 15:1517-1532; Stoutjesdijk, et al., (2002) Plant Physiol. 129:1723-1731; Yu, et al., (2003) Phytochemistry 63:753-763; and U.S. Pat. Nos. 5,035,323, 5,283,185 and 5,952,657; each of which is herein incorporated by reference. The efficiency of cosuppression may be increased by including a poly-dt region in the expression cassette at a position 3′ to the sense sequence and 5′ of the polyadenylation signal. See, US Patent Publication Number 20020058815, herein incorporated by reference. Typically, such a nucleotide sequence has substantial sequence identity to the sequence of the transcript of the endogenous gene, optimally greater than about 65% sequence identity, more optimally greater than about 85% sequence identity, most optimally greater than about 95% sequence identity. See, U.S. Pat. Nos. 5,283,185 and 5,035,323; herein incorporated by reference.

Transcriptional gene silencing (TGS) may be accomplished through use of hpRNA constructs wherein the inverted repeat of the hairpin shares sequence identity with the promoter region of a gene to be silenced. Processing of the hpRNA into short RNAs which can interact with the homologous promoter region may trigger degradation or methylation to result in silencing. (Aufsatz, et al., (2002) PNAS 99(4):16499-16506; Mette, et al., (2000) EMBO J. 19(19):5194-5201)

ii. Antisense Suppression

In some embodiments of the invention, inhibition of the expression of the target gene may be obtained by antisense suppression. For antisense suppression, the expression cassette is designed to express an RNA molecule complementary to all or part of a messenger RNA encoding the target gene. Over-expression of the antisense RNA molecule can result in reduced expression of the native gene. Accordingly, multiple plant lines transformed with the antisense suppression expression cassette are screened to identify those that show the greatest inhibition of target gene expression.

The polynucleotide for use in antisense suppression may correspond to all or part of the complement of the sequence encoding the target gene, all or part of the complement of the 5′ and/or 3′ untranslated region of the target gene transcript, or all or part of the complement of both the coding sequence and the untranslated regions of a transcript encoding the target gene. In addition, the antisense polynucleotide may be fully complementary (i.e., 100% identical to the complement of the target sequence) or partially complementary (i.e., less than 100% identical to the complement of the target sequence) to the target sequence. Antisense suppression may be used to inhibit the expression of multiple proteins in the same plant. Furthermore, portions of the antisense nucleotides may be used to disrupt the expression of the target gene. Generally, sequences of at least 50 nucleotides, 100 nucleotides, 200 nucleotides, 300, 500, 550, 500, 550 or greater may be used. Methods for using antisense suppression to inhibit the expression of endogenous genes in plants are described, for example, in Liu, et al., (2002) Plant Physiol. 129:1732-1753 and U.S. Pat. No. 5,759,829, which is herein incorporated by reference. Efficiency of antisense suppression may be increased by including a poly-dt region in the expression cassette at a position 3′ to the antisense sequence and 5′ of the polyadenylation signal. See, US Patent Publication Number 20020058815.

iii. Double-Stranded RNA Interference

In some embodiments of the invention, inhibition of the expression of a target gene may be obtained by double-stranded RNA (dsRNA) interference. For dsRNA interference, a sense RNA molecule like that described above for cosuppression and an antisense RNA molecule that is fully or partially complementary to the sense RNA molecule are expressed in the same cell, resulting in inhibition of the expression of the corresponding endogenous messenger RNA.

Expression of the sense and antisense molecules can be accomplished by designing the expression cassette to comprise both a sense sequence and an antisense sequence. Alternatively, separate expression cassettes may be used for the sense and antisense sequences. Multiple plant lines transformed with the dsRNA interference expression cassette or expression cassettes are then screened to identify plant lines that show the greatest inhibition of target gene expression. Methods for using dsRNA interference to inhibit the expression of endogenous plant genes are described in Waterhouse, et al., (1998) Proc. Natl. Acad. Sci. USA 95:13959-13965, Liu, et al., (2002) Plant Physiol. 129:1732-1753, and WO 99/59029, WO 99/53050, WO 99/61631, and WO 00/59035;

iv. Hairpin RNA Interference and Intron-Containing Hairpin RNA Interference

In some embodiments of the invention, inhibition of the expression of one or more target gene may be obtained by hairpin RNA (hpRNA) interference or intron-containing hairpin RNA (ihpRNA) interference. These methods are highly efficient at downregulating the expression of endogenous genes. See, Waterhouse and Helliwell, (2003) Nat. Rev. Genet. 5:29-38 and the references cited therein.

For hpRNA interference, the expression cassette is designed to express an RNA molecule that hybridizes with itself to form a hairpin structure that comprises a single-stranded loop region and a base-paired stem. The base-paired stem region comprises a sense sequence corresponding to all or part of the endogenous messenger RNA encoding the gene whose expression is to be inhibited, and an antisense sequence that is fully or partially complementary to the sense sequence. Thus, the base-paired stem region of the molecule generally determines the specificity of the RNA interference. hpRNA molecules are highly efficient at inhibiting the expression of endogenous genes, and the RNA interference they induce is inherited by subsequent generations of plants. See, for example, Chuang and Meyerowitz, (2000) Proc. Natl. Acad. Sci. USA 97:5985-5990; Stoutjesdijk, et al., (2002) Plant Physiol. 129:1723-1731; and Waterhouse and Helliwell, (2003) Nat. Rev. Genet. 5:29-38. Methods for using hpRNA interference to inhibit or silence the expression of genes are described, for example, in Chuang and Meyerowitz, (2000) Proc. Natl. Acad. Sci. USA 97:5985-5990; Stoutjesdijk, et al., (2002) Plant Physiol. 129:1723-1731; Waterhouse and Helliwell, (2003) Nat. Rev. Genet. 5:29-38; Pandolfini, et al., BMC Biotechnology 3:7, and US Patent Publication Number 20030175965; each of which is herein incorporated by reference. A transient assay for the efficiency of hpRNA constructs to silence gene expression in vivo has been described by Panstruga, et al., (2003) Mol. Biol. Rep. 30:135-150, herein incorporated by reference.

ForihpRNA, the interfering molecules have the same general structure as for hpRNA, but the RNA molecule additionally comprises an intron that is capable of being spliced in the cell in which the ihpRNA is expressed. The use of an intron minimizes the size of the loop in the hairpin RNA molecule following splicing, and this increases the efficiency of interference. See, for example, Smith, et al., (2000) Nature 507:319-320. In fact, Smith, et al., show 100% suppression of endogenous gene expression using ihpRNA-mediated interference. Methods for using ihpRNA interference to inhibit the expression of endogenous plant genes are described, for example, in Smith, et al., (2000) Nature 507:319-320; Wesley, et al., (2001) Plant J. 27:581-590; Wang and Waterhouse, (2001) Curr. Opin. Plant Biol. 5:156-150; Waterhouse and Helliwell, (2003) Nat. Rev. Genet. 5:29-38; Helliwell and Waterhouse, (2003) Methods 30:289-295, and US Patent Publication Number 20030180955, each of which is herein incorporated by reference.

The expression cassette for hpRNA interference may also be designed such that the sense sequence and the antisense sequence do not correspond to an endogenous RNA. In this embodiment, the sense and antisense sequence flank a loop sequence that comprises a nucleotide sequence corresponding to all or part of the endogenous messenger RNA of the target gene. Thus, it is the loop region that determines the specificity of the RNA interference. See, for example, WO 02/00905, herein incorporated by reference.

v. Amplicon-Mediated Interference

Amplicon expression cassettes comprise a plant virus-derived sequence that contains all or part of the target gene but generally not all of the genes of the native virus. The viral sequences present in the transcription product of the expression cassette allow the transcription product to direct its own replication. The transcripts produced by the amplicon may be either sense or antisense relative to the target sequence (i.e., the messenger RNA for target gene). Methods of using amplicons to inhibit the expression of endogenous plant genes are described, for example, in Angell and Baulcombe, (1997) EMBO J. 16:3675-3685, Angell and Baulcombe, (1999) Plant J. 20:357-362, and U.S. Pat. No. 6,656,805, each of which is herein incorporated by reference.

vi. Ribozymes

In some embodiments, the polynucleotide expressed by the expression cassette of the invention is catalytic RNA or has ribozyme activity specific for the messenger RNA of target gene. Thus, the polynucleotide causes the degradation of the endogenous messenger RNA, resulting in reduced expression of the target gene. This method is described, for example, in U.S. Pat. No. 5,987,071, herein incorporated by reference.

2. Gene Disruption

In some embodiments of the present invention, the activity of a miRNA or a target gene is reduced or eliminated by disrupting the gene encoding the target polypeptide. The gene encoding the target polypeptide may be disrupted by any method known in the art. For example, in one embodiment, the gene is disrupted by transposon tagging. In another embodiment, the gene is disrupted by mutagenizing plants using random or targeted mutagenesis, and selecting for plants that have reduced response regulator activity.

Recombinant expression is effected by cloning the nucleic acid of interest (e.g., miRNA, target gene, silencing agent etc) into a nucleic acid expression construct under the expression of a plant promoter.

In other embodiments of the invention, synthetic single stranded nucleic acids are used as miRNA inhibitors. A miRNA inhibitor is typically between about 17 to 25 nucleotides in length and comprises a 5′ to 3′ sequence that is at least 90% complementary to the 5′ to 3′ sequence of a mature miRNA. In certain embodiments, a miRNA inhibitor molecule is 17, 18, 19, 20, 21, 22, 23, 24, or 25 nucleotides in length, or any range derivable therein. Moreover, a miRNA inhibitor has a sequence (from 5′ to 3′) that is or is at least 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 99.1, 99.2, 99.3, 99.4, 99.5, 99.6, 99.7, 99.8, 99.9 or 100% complementary, or any range derivable therein, to the 5′ to 3′ sequence of a mature miRNA, particularly a mature, naturally occurring miRNA.

As mentioned, the polynucleotide sequences of the invention can be provided to the plant as naked RNA or expressed from a nucleic acid expression construct, where it is operaly linked to a regulatory sequence.

According to a specific embodiment of the invention, there is provided a nucleic acid construct comprising a nucleic acid sequence encoding a miRNA or siRNA or a precursor thereof as described herein, said nucleic acid sequence being under a transcriptional control of a regulatory sequence such as a fiber-cell specific promoter.

Alternatively or additionally, there is provided a nucleic acid construct comprising a nucleic acid sequence encoding an inhibitor of the miRNA or siRNA sequences as described herein (e.g., target mimic, miR resistant target or miR inhibitor), said nucleic acid sequence being under a transcriptional control of a regulatory sequence such as a tissue (e.g., root) specific promoter.

An exemplary nucleic acid construct which can be used for plant transformation include, the pORE E2 binary vector (FIG. 1) in which the relevant polynucleotide sequence is ligated under the transcriptional control of a promoter.

A coding nucleic acid sequence is “operably linked” or “transcriptionally linked to a regulatory sequence (e.g., promoter)” if the regulatory sequence is capable of exerting a regulatory effect on the coding sequence linked thereto. Thus the regulatory sequence controls the transcription of the miRNA or precursor thereof.

The term “regulatory sequence”, as used herein, means any DNA, that is involved in driving transcription and controlling (i.e., regulating) the timing and level of transcription of a given DNA sequence, such as a DNA coding for a miRNA or siRNA, precursor or inhibitor of same. For example, a 5′ regulatory region (or “promoter region”) is a DNA sequence located upstream (i.e., 5′) of a coding sequence and which comprises the promoter and the 5′-untranslated leader sequence. A 3′ regulatory region is a DNA sequence located downstream (i.e., 3′) of the coding sequence and which comprises suitable transcription termination (and/or regulation) signals, including one or more polyadenylation signals.

For the purpose of the invention, the promoter is a plant-expressible promoter. As used herein, the term “plant-expressible promoter” means a DNA sequence which is capable of controlling (initiating) transcription in a plant cell. This includes any promoter of plant origin, but also any promoter of non-plant origin which is capable of directing transcription in a plant cell, i.e., certain promoters of viral or bacterial origin Thus, any suitable promoter sequence can be used by the nucleic acid construct of the present invention. According to some embodiments of the invention, the promoter is a constitutive promoter, a tissue-specific promoter or an inducible promoter (e.g. an abiotic stress-inducible promoter).

Suitable constitutive promoters include, for example, hydroperoxide lyase (HPL) promoter, CaMV 35S promoter (Odell et al, Nature 313:810-812, 1985); maize Ubi 1 (Christensen et al., Plant Sol. Biol. 18:675-689, 1992); rice actin (McElroy et al., Plant Cell 2:163-171, 1990); pEMU (Last et al, Theor. Appl. Genet. 81:581-588, 1991); CaMV 19S (Nilsson et al, Physiol. Plant 100:456-462, 1997); GOS2 (de Pater et al, Plant J November; 2(6):837-44, 1992); ubiquitin (Christensen et al, Plant MoI. Biol. 18: 675-689, 1992); Rice cyclophilin (Bucholz et al, Plant MoI Biol. 25(5):837-43, 1994); Maize H3 histone (Lepetit et al, MoI. Gen. Genet. 231: 276-285, 1992); Actin 2 (An et al, Plant J. 10(1); 107-121, 1996) and Synthetic Super MAS (Ni et al., The Plant Journal 7: 661-76, 1995). Other constitutive promoters include those in U.S. Pat. Nos. 5,659,026, 5,608,149; 5,608,144; 5,604,121; 5,569,597: 5,466,785; 5,399,680; 5,268,463; and 5,608,142.

Suitable tissue-specific promoters include, but not limited to, leaf-specific promoters [such as described, for example, by Yamamoto et al., Plant J. 12:255-265, 1997; Kwon et al., Plant Physiol. 105:357-67, 1994; Yamamoto et al., Plant Cell Physiol. 35:773-778, 1994; Gotor et al., Plant J. 3:509-18, 1993; Orozco et al., Plant MoI. Biol. 23:1129-1138, 1993; and Matsuoka et al., Proc. Natl. Acad. Sci. USA 90:9586-9590, 1993], seed-preferred promoters [e.g., from seed specific genes (Simon, et al., Plant MoI. Biol. 5. 191, 1985; Scofield, et al., J. Biol. Chem. 262: 12202, 1987; Baszczynski, et al., Plant MoI. Biol. 14: 633, 1990), Brazil Nut albumin (Pearson' et al., Plant MoI. Biol. 18: 235-245, 1992), legumin (Ellis, et al. Plant MoI. Biol. 10: 203-214, 1988), Glutelin (rice) (Takaiwa, et al., MoI. Gen. Genet. 208: 15-22, 1986; Takaiwa, et al., FEBS Letts. 221: 43-47, 1987), Zein (Matzke et al., Plant MoI Biol, 143)323-32 1990), napA (Stalberg, et al., Planta 199: 515-519, 1996), Wheat SPA (Albanietal, Plant Cell, 9: 171-184, 1997), sunflower oleosin (Cummins, et al, Plant MoI. Biol. 19: 873-876, 1992)], endosperm specific promoters [e.g., wheat LMW and HMW, glutenin-1 (MoI Gen Genet. 216:81-90, 1989; NAR 17:461-2), wheat a, b and g gliadins (EMBO3: 1409-15, 1984), Barley ltrl promoter, barley Bl, C, D hordein (Theor Appl Gen 98:1253-62, 1999; Plant J 4:343-55, 1993; MoI Gen Genet. 250:750-60, 1996), Barley DOF (Mena et al., The Plant Journal, 116(1): 53-62, 1998), Biz2 (EP99106056.7), Synthetic promoter (Vicente-Carbajosa et al., Plant J. 13: 629-640, 1998), rice prolamin NRP33, rice-globulin GIb-I (Wu et al., Plant Cell Physiology 39(8) 885-889, 1998), rice alpha-globulin REB/OHP-1 (Nakase et al. Plant MoI. Biol. 33: 513-S22, 1997), rice ADP-glucose PP (Trans Res 6:157-68, 1997), maize ESR gene family (Plant J 12:235-46, 1997), sorghum gamma-kafirin (PMB 32:1029-35, 1996); e.g., the Napin promoter], embryo specific promoters [e.g., rice OSH1 (Sato et al, Proc. Natl. Acad. Sci. USA, 93: 8117-8122), KNOX (Postma-Haarsma et al, Plant MoI. Biol. 39:257-71, 1999), rice oleosin (Wu et at, J. Biochem., 123:386, 1998)], and flower-specific promoters [e.g., AtPRP4, chalene synthase (chsA) (Van der Meer, et al., Plant MoI. Biol. 15, 95-109, 1990), LAT52 (Twell et al., MoI. Gen Genet. 217:240-245; 1989), apetala-3]. Also contemplated are root-specific promoters such as the ROOTP promoter described in Vissenberg K, et al. Plant Cell Physiol. 2005 January; 46(1):192-200.

The nucleic acid construct of some embodiments of the invention can further include an appropriate selectable marker and/or an origin of replication.

The nucleic acid construct of some embodiments of the invention can be utilized to stably or transiently transform plant cells. In stable transformation, the exogenous polynucleotide is integrated into the plant genome and as such it represents a stable and inherited trait. In transient transformation, the exogenous polynucleotide is expressed by the cell transformed but it is not integrated into the genome and as such it represents a transient trait.

When naked RNA or DNA is introduced into a cell, the polynucleotides may be synthesized using any method known in the art, including either enzymatic syntheses or solid-phase syntheses. These are especially useful in the case of short polynucleotide sequences with or without modifications as explained above. Equipment and reagents for executing solid-phase synthesis are commercially available from, for example, Applied Biosystems. Any other means for such synthesis may also be employed; the actual synthesis of the oligonucleotides is well within the capabilities of one skilled in the art and can be accomplished via established methodologies as detailed in, for example: Sambrook, J. and Russell, D. W. (2001), “Molecular Cloning: A Laboratory Manual”; Ausubel, R. M. et al., eds. (1994, 1989), “Current Protocols in Molecular Biology,” Volumes I-III, John Wiley & Sons, Baltimore, Md.; Perbal, B. (1988), “A Practical Guide to Molecular Cloning,” John Wiley & Sons, New York; and Gait, M. J., ed. (1984), “Oligonucleotide Synthesis”; utilizing solid-phase chemistry, e.g. cyanoethyl phosphoramidite followed by deprotection, desalting, and purification by, for example, an automated trityl-on method or HPLC.

There are various methods of introducing foreign genes into both monocotyledonous and dicotyledonous plants (Potrykus, L, Annu. Rev. Plant. Physiol, Plant. MoI. Biol. (1991) 42:205-225; Shimamoto et al., Nature (1989) 338:274-276).

The principle methods of causing stable integration of exogenous DNA into plant genomic DNA include two main approaches:

(i) Agrobacterium-mediated gene transfer (e.g., T-DNA using Agrobacterium tumefaciens or Agrobacterium rhizogenes); see for example, Klee et al. (1987) Annu. Rev. Plant Physiol. 38:467-486; Klee and Rogers in Cell Culture and Somatic Cell Genetics of Plants, Vol. 6, Molecular Biology of Plant Nuclear Genes, eds. Schell, J., and Vasil, L. K., Academic Publishers, San Diego, Calif. (1989) p. 2-25; Gatenby, in Plant Biotechnology, eds. Kung, S, and Arntzen, C. J., Butterworth Publishers, Boston, Mass. (1989) p. 93-112.

(ii) Direct DNA uptake: Paszkowski et al., in Cell Culture and Somatic Cell Genetics of Plants, Vol. 6, Molecular Biology of Plant Nuclear Genes eds. Schell, J., and Vasil, L. K., Academic Publishers, San Diego, Calif. (1989) p. 52-68; including methods for direct uptake of DNA into protoplasts, Toriyama, K. et al. (1988) Bio/Technology 6:1072-1074. DNA uptake induced by brief electric shock of plant cells: Zhang et al. Plant Cell Rep. (1988) 7:379-384. Fromm et al. Nature (1986) 319:791-793. DNA injection into plant cells or tissues by particle bombardment, Klein et al. Bio/Technology (1988) 6:559-563; McCabe et al. Bio/Technology (1988) 6:923-926; Sanford, Physiol. Plant. (1990) 79:206-209; by the use of micropipette systems: Neuhaus et al., Theor. Appl. Genet. (1987) 75:30-36; Neuhaus and Spangenberg, Physiol. Plant. (1990) 79:213-217; glass fibers or silicon carbide whisker transformation of cell cultures, embryos or callus tissue, U.S. Pat. No. 5,464,765 or by the direct incubation of DNA with germinating pollen, DeWet et al. in Experimental Manipulation of Ovule Tissue, eds. Chapman, G. P. and Mantell, S. H. and Daniels, W. Longman, London, (1985) p. 197-209; and Ohta, Proc. Natl. Acad. Sci. USA (1986) 83:715-719.

The Agrobacterium system includes the use of plasmid vectors that contain defined DNA segments that integrate into the plant genomic DNA. Methods of inoculation of the plant tissue vary depending upon the plant species and the Agrobacterium delivery system. A widely used approach is the leaf disc procedure which can be performed with any tissue explant that provides a good source for initiation of whole plant differentiation. See, e.g., Horsch et al. in Plant Molecular Biology Manual A5, Kluwer Academic Publishers, Dordrecht (1988) p. 1-9. A supplementary approach employs the Agrobacterium delivery system in combination with vacuum infiltration. The Agrobacterium system is especially viable in the creation of transgenic dicotyledonous plants.

According to a specific embodiment of the present invention, the exogenous polynucleotide is introduced into the plant by infecting the plant with a bacteria, such as using a floral dip transformation method (as described in further detail in Example 5, of the Examples section which follows).

There are various methods of direct DNA transfer into plant cells. In electroporation, the protoplasts are briefly exposed to a strong electric field. In microinjection, the DNA is mechanically injected directly into the cells using very small micropipettes. In microparticle bombardment, the DNA is adsorbed on microprojectiles such as magnesium sulfate crystals or tungsten particles, and the microprojectiles are physically accelerated into cells or plant tissues.

Following stable transformation plant propagation is exercised. The most common method of plant propagation is by seed. Regeneration by seed propagation, however, has the deficiency that due to heterozygosity there is a lack of uniformity in the crop, since seeds are produced by plants according to the genetic variances governed by Mendelian rules. Basically, each seed is genetically different and each will grow with its own specific traits. Therefore, it is preferred that the transformed plant be produced such that the regenerated plant has the identical traits and characteristics of the parent transgenic plant. For this reason it is preferred that the transformed plant be regenerated by micropropagation which provides a rapid, consistent reproduction of the transformed plants.

Micropropagation is a process of growing new generation plants from a single piece of tissue that has been excised from a selected parent plant or cultivar. The new generation plants which are produced are genetically identical to, and have all of the characteristics of, the original plant. Micropropagation allows mass production of quality plant material in a short period of time and offers a rapid multiplication of selected cultivars in the preservation of the characteristics of the original transgenic or transformed plant. The advantages of cloning plants are the speed of plant multiplication and the quality and uniformity of plants produced.

Micropropagation is a multi-stage procedure that requires alteration of culture medium or growth conditions between stages. Thus, the micropropagation process involves four basic stages: Stage one, initial tissue culturing; stage two, tissue culture multiplication; stage three, differentiation and plant formation; and stage four, greenhouse culturing and hardening. During stage one, initial tissue culturing, the tissue culture is established and certified contaminant-free. During stage two, the initial tissue culture is multiplied until a sufficient number of tissue samples are produced to meet production goals. During stage three, the tissue samples grown in stage two are divided and grown into individual plantlets. At stage four, the transformed plantlets are transferred to a greenhouse for hardening where the plants' tolerance to light is gradually increased so that it can be grown in the natural environment.

Although stable transformation is presently preferred, transient transformation of leaf cells, meristematic cells or the whole plant is also envisaged by the present invention.

Transient transformation can be effected by any of the direct DNA transfer methods described above or by viral infection using modified plant viruses.

Viruses that have been shown to be useful for the transformation of plant hosts include CaMV, Tobacco mosaic virus (TMV), brome mosaic virus (BMV) and Bean Common Mosaic Virus (BV or BCMV). Transformation of plants using plant viruses is described in U.S. Pat. No. 4,855,237 (bean golden mosaic virus; BGV), EP-A 67,553 (TMV), Japanese Published Application No. 63-14693 (TMV), EPA 194,809 (BV), EPA 278,667 (BV); and Gluzman, Y. et al., Communications in Molecular Biology: Viral Vectors, Cold Spring Harbor Laboratory, New York, pp. 172-189 (1988). Pseudovirus particles for use in expressing foreign DNA in many hosts, including plants are described in WO 87/06261. According to some embodiments of the invention, the virus used for transient transformations is avirulent and thus is incapable of causing severe symptoms such as reduced growth rate, mosaic, ring spots, leaf roll, yellowing, streaking, pox formation, tumor formation and pitting. A suitable avirulent virus may be a naturally occurring avirulent virus or an artificially attenuated virus. Virus attenuation may be effected by using methods well known in the art including, but not limited to, sub-lethal heating, chemical treatment or by directed mutagenesis techniques such as described, for example, by Kurihara and Watanabe (Molecular Plant Pathology 4:259-269, 2003), Galon et al. (1992), Atreya et al. (1992) and Huet et al. (1994).

Suitable virus strains can be obtained from available sources such as, for example, the American Type culture Collection (ATCC) or by isolation from infected plants. Isolation of viruses from infected plant tissues can be effected by techniques well known in the art such as described, for example by Foster and Tatlor, Eds. “Plant Virology Protocols From Virus Isolation to Transgenic Resistance (Methods in Molecular Biology (Humana Pr), VoI 81)”, Humana Press, 1998. Briefly, tissues of an infected plant believed to contain a high concentration of a suitable virus, preferably young leaves and flower petals, are ground in a buffer solution (e.g., phosphate buffer solution) to produce a virus infected sap which can be used in subsequent inoculations.

Construction of plant RNA viruses for the introduction and expression of non-viral exogenous polynucleotide sequences in plants is demonstrated by the above references as well as by Dawson, W. O. et al, Virology (1989) 172:285-292; Takamatsu et al. EMBO J. (1987) 6:307-311; French et al. Science (1986) 231:1294-1297; Takamatsu et al. FEBS Letters (1990) 269:73-76; and U.S. Pat. No. 5,316,931.

When the virus is a DNA virus, suitable modifications can be made to the virus itself. Alternatively, the virus can first be cloned into a bacterial plasmid for ease of constructing the desired viral vector with the foreign DNA. The virus can then be excised from the plasmid. If the virus is a DNA virus, a bacterial origin of replication can be attached to the viral DNA, which is then replicated by the bacteria. Transcription and translation of this DNA will produce the coat proteins which will encapsidate the viral DNA. If the virus is an RNA virus, the virus is generally cloned as a cDNA and inserted into a plasmid. The plasmid is then used to make all of the constructions. The RNA virus is then produced by transcribing the viral sequence of the plasmid and translation of the viral genes to produce the coat protein(s) which encapsidate the viral RNA.

In one embodiment, a plant viral nucleic acid is provided in which the native coat protein coding sequence has been deleted from a viral nucleic acid, a non-native plant viral coat protein coding sequence and a non-native promoter, preferably the subgenomic promoter of the non-native coat protein coding sequence, capable of expression in the plant host, packaging of the recombinant plant viral nucleic acid, and ensuring a systemic infection of the host by the recombinant plant viral nucleic acid, has been inserted. Alternatively, the coat protein gene may be inactivated by insertion of the non-native nucleic acid sequence within it, such that a protein is produced. The recombinant plant viral nucleic acid may contain one or more additional non-native subgenomic promoters. Each non-native subgenomic promoter is capable of transcribing or expressing adjacent genes or nucleic acid sequences in the plant host and incapable of recombination with each other and with native subgenomic promoters. Non-native (foreign) nucleic acid sequences may be inserted adjacent the native plant viral subgenomic promoter or the native and a non-native plant viral subgenomic promoters if more than one nucleic acid sequence is included. The non-native nucleic acid sequences are transcribed or expressed in the host plant under control of the subgenomic promoter to produce the desired products.

In a second embodiment, a recombinant plant viral nucleic acid is provided as in the first embodiment except that the native coat protein coding sequence is placed adjacent one of the non-native coat protein subgenomic promoters instead of a non-native coat protein coding sequence.

In a third embodiment, a recombinant plant viral nucleic acid is provided in which the native coat protein gene is adjacent its subgenomic promoter and one or more non-native subgenomic promoters have been inserted into the viral nucleic acid. The inserted non-native subgenomic promoters are capable of transcribing or expressing adjacent genes in a plant host and are incapable of recombination with each other and with native subgenomic promoters. Non-native nucleic acid sequences may be inserted adjacent the non-native subgenomic plant viral promoters such that the sequences are transcribed or expressed in the host plant under control of the subgenomic promoters to produce the desired product.

In a fourth embodiment, a recombinant plant viral nucleic acid is provided as in the third embodiment except that the native coat protein coding sequence is replaced by a non-native coat protein coding sequence.

The viral vectors are encapsidated by the coat proteins encoded by the recombinant plant viral nucleic acid to produce a recombinant plant virus. The recombinant plant viral nucleic acid or recombinant plant virus is used to infect appropriate host plants. The recombinant plant viral nucleic acid is capable of replication in the host, systemic spread in the host, and transcription or expression of foreign gene(s) (isolated nucleic acid) in the host to produce the desired sequence.

In addition to the above, the nucleic acid molecule of the present invention can also be introduced into a chloroplast genome thereby enabling chloroplast expression.

A technique for introducing exogenous nucleic acid sequences to the genome of the chloroplasts is known. This technique involves the following procedures. First, plant cells are chemically treated so as to reduce the number of chloroplasts per cell to about one. Then, the exogenous nucleic acid is introduced via particle bombardment into the cells with the aim of introducing at least one exogenous nucleic acid molecule into the chloroplasts. The exogenous nucleic acid is selected such that it is integratable into the chloroplast's genome via homologous recombination which is readily effected by enzymes inherent to the chloroplast. To this end, the exogenous nucleic acid includes, in addition to a gene of interest, at least one nucleic acid stretch which is derived from the chloroplast's genome. In addition, the exogenous nucleic acid includes a selectable marker, which serves by sequential selection procedures to ascertain that all or substantially all of the copies of the chloroplast genomes following such selection will include the exogenous nucleic acid. Further details relating to this technique are found in U.S. Pat. Nos. 4,945,050; and 5,693,507 which are incorporated herein by reference.

Regardless of the method of transformation, propagation or regeneration, the present invention also contemplates a transgenic plant exogenously expressing the polynucleotide of the invention.

According to a specific embodiment, the transgenic plant exogenously expresses a polynucleotide having a nucleic acid sequence at least 80%, 85%, 90%, 95% or even 100% identical to SEQ ID NOs: 1-216, 217-222, 223-227, 264-416, 417-421, 458-614, 615-626, 627-638, 639 or 640 (Tables 1-8), wherein said nucleic acid sequence is capable of regulating abiotic stress tolerance (e.g., salinity, heat stress or drought) of the plant.

According to further embodiments, the exogenous polynucleotide encodes a precursor of said nucleic acid sequence.

According to yet further embodiments, the stem-loop precursor is at least 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95% or even 100% identical to SEQ ID NO: 217-222, 417-421, 458-614, 627-638 or 640 (precursor sequences of Tables 1-8) but importantly comprises a sequence that is at least 90% identical to SEQ ID NOs: 1-216, 217-222, 223-227, 264-416, 615-626 or 639 (Tables 1-8 including all the mature sequences). More specifically the exogenous polynucleotide is selected from the group consisting of SEQ ID NO: 1-216, 217-222, 223-227, 264-416, 417-421, 458-614, 615-626, 627-638, 639 or 640.

Alternatively, there is provided a transgenic plant exogenously expressing a polynucleotide which downregulates an activity or expression of a gene encoding an RNAi molecule having a nucleic acid sequence selected from the group consisting of SEQ ID NOs: 1-100, 615-626, 627-638, 639 or 640.

More specifically, the transgenic plant expresses the nucleic acid agent of Tables 14-19. Even more specifically, to improve the agricultural traits of the transgenic plant, it expresses a nucleic acid agent of Tables 14, 15a, 16a and 17-19.

Also provided are transgenic plants over expressing the target gene of the invention such as exogenously expressing polypeptide sequences which comprise amino acid sequence selected from the group consisting of SEQ ID NOs: 1816-1860, 1870-1891, 1916-1920, 1925-1930, 1940-1951, 1964-2009, 2183-2326, 2500-2762, 3041-3043, 3164-3174, 3270-3312, 3324-3457, 3945-3949 (targets of upregulated dsRNAs of Tables 20-22) or homologs/orthologs of same (at least about 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95% or higher level of homology as described above).

Accordingly, the present teachings also contemplate nucleic acid expression constructs and plants which comprise the same expressing polynucleotide sequences at least about 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95% or higher level of identity to SEQ ID NOs: 2015-2052, 2062-2079, 2102-2105, 2110, 2117-2125, 2137-2177, 2355-2477, 3970-4184, 4419-4421, 4528-4539, 4625-4660, 4671-4786, 5214-5218 (targets of upregulated dsRNAs of Tables 20-22).

Also contemplated are transgenic plants which express any of the polynucleotide or polypeptide sequences of the present invention (SEQ ID NOs: 1-640, 877-886, 893-913, 932-1012, 1226-1535, 1617-5237 and homologs thereof). This is important for analyzing the significance of those sequences in regulating abiotic stress tolerance and biomass, NUE, vigor or yield.

Also contemplated are hybrids of the above described transgenic plants. A “hybrid plant” refers to a plant or a part thereof resulting from a cross between two parent plants, wherein one parent is a genetically engineered plant of the invention (transgenic plant expressing an exogenous RNAi sequence or a precursor thereof). Such a cross can occur naturally by, for example, sexual reproduction, or artificially by, for example, in vitro nuclear fusion. Methods of plant breeding are well-known and within the level of one of ordinary skill in the art of plant biology.

Since abiotic stress tolerance, nitrogen use efficiency as well as yield, vigor or biomass of the plant can involve multiple genes acting additively or in synergy (see, for example, in Quesda et al., Plant Physiol. 130:951-063, 2002), the invention also envisages expressing a plurality of exogenous polynucleotides in a single host plant to thereby achieve superior effect on abiotic stress tolerance, efficiency of nitrogen use, yield, vigor and biomass of the plant.

Expressing a plurality of exogenous polynucleotides in a single host plant can be effected by co-introducing multiple nucleic acid constructs, each including a different exogenous polynucleotide, into a single plant cell. The transformed cell can then be regenerated into a mature plant using the methods described hereinabove. Alternatively, expressing a plurality of exogenous polynucleotides in a single host plant can be effected by co-introducing into a single plant-cell a single nucleic-acid construct including a plurality of different exogenous polynucleotides. Such a construct can be designed with a single promoter sequence which can transcribe a polycistronic messenger RNA including all the different exogenous polynucleotide sequences. Alternatively, the construct can include several promoter sequences each linked to a different exogenous polynucleotide sequence.

The plant cell transformed with the construct including a plurality of different exogenous polynucleotides can be regenerated into a mature plant, using the methods described hereinabove.

Alternatively, expressing a plurality of exogenous polynucleotides can be effected by introducing different nucleic acid constructs, including different exogenous polynucleotides, into a plurality of plants. The regenerated transformed plants can then be cross-bred and resultant progeny selected for superior yield or fiber traits as described above, using conventional plant breeding techniques.

Expression of the miRNAs/siRNAs of the present invention or precursors thereof can be qualified using methods which are well known in the art such as those involving gene amplification e.g., PCR or RT-PCR or Northern blot or in-situ hybridization.

According to some embodiments of the invention, the plant expressing the exogenous polynucleotide(s) is grown under stress (abiotic) or normal conditions (e.g., biotic conditions and/or abiotic conditions with sufficient water, optimal temperature and salt). Such conditions, which depend on the plant being grown, are known to those skilled in the art of agriculture, and are further, described above. Examples 7-9 hereinbelow provides specific assays for measuring abiotic stress tolerance.

According to some embodiments of the invention, the method further comprises growing the plant expressing the exogenous polynucleotide(s) under abiotic stress or nitrogen limiting conditions. Non-limiting examples of abiotic stress conditions include, water deprivation, drought, excess of water (e.g., flood, waterlogging), freezing, low temperature, high temperature, strong winds, heavy metal toxicity, anaerobiosis, nutrient deficiency, nutrient excess, salinity, atmospheric pollution, intense light, insufficient light, or UV irradiation, etiolation and atmospheric pollution.

Thus, the invention encompasses plants exogenously expressing the polynucleotide(s), the nucleic acid constructs of the invention.

Methods of determining the level in the plant of the RNA transcribed from the exogenous polynucleotide are well known in the art and include, for example, Northern blot analysis, reverse transcription polymerase chain reaction (RT-PCR) analysis (including quantitative, semi-quantitative or real-time RT-PCR) and RNA-m situ hybridization.

The sequence information and annotations uncovered by the present teachings can be harnessed in favor of classical breeding. Thus, sub-sequence data of those polynucleotides described above, can be used as markers for marker assisted selection (MAS), in which a marker is used for indirect selection of a genetic determinant or determinants of a trait of interest (e.g., tolerance to abiotic stress). Nucleic acid data of the present teachings (DNA or RNA sequence) may contain or be linked to polymorphic sites or genetic markers on the genome such as restriction fragment length polymorphism (RFLP), microsatellites and single nucleotide polymorphism (SNP), DNA fingerprinting (DFP), amplified fragment length polymorphism (AFLP), expression level polymorphism, and any other polymorphism at the DNA or RNA sequence.

Examples of marker assisted selections include, but are not limited to, selection for a morphological trait (e.g., a gene that affects form, coloration, male sterility or resistance such as the presence or absence of awn, leaf sheath coloration, height, grain color, aroma of rice); selection for a biochemical trait (e.g., a gene that encodes a protein that can be extracted and observed; for example, isozymes and storage proteins); selection for a biological trait (e.g., pathogen races or insect biotypes based on host pathogen or host parasite interaction can be used as a marker since the genetic constitution of an organism can affect its susceptibility to pathogens or parasites).

The polynucleotides described hereinabove can be used in a wide range of economical plants, in a safe and cost effective manner.

Plant lines exogenously expressing the polynucleotide of the invention can be screened to identify those that show the greatest increase of the desired plant trait.

Thus, according to an additional embodiment of the present invention, there is provided a method of evaluating a trait of a plant, the method comprising: (a) expressing in a plant or a portion thereof the nucleic acid construct; and (b) evaluating a trait of a plant as compared to a wild type plant of the same type; thereby evaluating the trait of the plant.

Thus, the effect of the transgene (the exogenous polynucleotide) on different plant characteristics may be determined any method known to one of ordinary skill in the art.

Thus, for example, tolerance to abiotic stress conditions may be compared in transformed plants {i.e., expressing the transgene) compared to non-transformed (wild type) plants exposed to the same stress conditions (e.g. water deprivation, salt stress e.g. salinity, suboptimal temperature, osmotic stress, and the like), using the following assays.

Methods of qualifying plants as being tolerant or having improved tolerance to abiotic stress or limiting nitrogen levels are well known in the art and are further described hereinbelow.

Fertilizer use efficiency—To analyze whether the transgenic plants are more responsive to fertilizers, plants are grown in agar plates or pots with a limited amount of fertilizer, as described, for example, in Yanagisawa et al (Proc Natl Acad Sci USA. 2004; 101:7833-8). The plants are analyzed for their overall size, time to flowering, yield, protein content of shoot and/or grain. The parameters checked are the overall size of the mature plant, its wet and dry weight, the weight of the seeds yielded, the average seed size and the number of seeds produced per plant. Other parameters that may be tested are: the chlorophyll content of leaves (as nitrogen plant status and the degree of leaf verdure is highly correlated), amino acid and the total protein content of the seeds or other plant parts such as leaves or shoots, oil content, etc. Similarly, instead of providing nitrogen at limiting amounts, phosphate or potassium can be added at increasing concentrations. Again, the same parameters measured are the same as listed above. In this way, nitrogen use efficiency (NUE), phosphate use efficiency (PUE) and potassium use efficiency (KUE) are assessed, checking the ability of the transgenic plants to thrive under nutrient restraining conditions.

Nitrogen use efficiency—To analyze whether the transgenic plants (e.g., Arabidopsis plants) are more responsive to nitrogen, plant are grown in 0.75-3 millimolar (mM, nitrogen deficient conditions) or 6-10 mM (optimal nitrogen concentration). Plants are allowed to grow for additional 25 days or until seed production. The plants are then analyzed for their overall size, time to flowering, yield, protein content of shoot and/or grain/seed production. The parameters checked can be the overall size of the plant, wet and dry weight, the weight of the seeds yielded, the average seed size and the number of seeds produced per plant. Other parameters that may be tested are: the chlorophyll content of leaves (as nitrogen plant status and the degree of leaf greenness is highly correlated), amino acid and the total protein content of the seeds or other plant parts such as leaves or shoots and oil content. Transformed plants not exhibiting substantial physiological and/or morphological effects, or exhibiting higher measured parameters levels than wild-type plants, are identified as nitrogen use efficient plants.

Nitrogen Use efficiency assay using plantlets—The assay is done according to Yanagisawa-S. et al. with minor modifications (“Metabolic engineering with Dof1 transcription factor in plants: Improved nitrogen assimilation and growth under low-nitrogen conditions” Proc. Natl. Acad. Sci. USA 101, 7833-7838). Briefly, transgenic plants which are grown for 7-10 days in 0.5×MS [Murashige-Skoog] supplemented with a selection agent are transferred to two nitrogen-limiting conditions: MS media in which the combined nitrogen concentration (NH₄NO₃and KNO₃) was 0.75 mM (nitrogen deficient conditions) or 6-15 mM (optimal nitrogen concentration). Plants are allowed to grow for additional 30-40 days and then photographed, individually removed from the Agar (the shoot without the roots) and immediately weighed (fresh weight) for later statistical analysis. Constructs for which only T1 seeds are available are sown on selective media and at least 20 seedlings (each one representing an independent transformation event) are carefully transferred to the nitrogen-limiting media. For constructs for which T2 seeds are available, different transformation events are analyzed. Usually, 20 randomly selected plants from each event are transferred to the nitrogen-limiting media allowed to grow for 3-4 additional weeks and individually weighed at the end of that period. Transgenic plants are compared to control plants grown in parallel under the same conditions. Mock-transgenic plants expressing the uidA reporter gene (GUS) under the same promoter or transgenic plants carrying the same promoter but lacking a reporter gene are used as control.

Nitrogen determination—The procedure for N (nitrogen) concentration determination in the structural parts of the plants involves the potassium persulfate digestion method to convert organic N to NO₃⁻ (Purcell and King 1996 Argon. J. 88:111-113, the modified Cd⁻ mediated reduction of NO₃⁻ to NO₂⁻ (Vodovotz 1996 Biotechniques 20:390-394) and the measurement of nitrite by the Griess assay (Vodovotz 1996, supra). The absorbance values are measured at 550 nm against a standard curve of NaNO₂. The procedure is described in details in Samonte et al. 2006 Agron. J. 98:168-176.

Tolerance to abiotic stress (e.g. tolerance to drought or salinity) can be evaluated by determining the differences in physiological and/or physical condition, including but not limited to, vigor, growth, size, or root length, or specifically, leaf color or leaf area size of the transgenic plant compared to a non-modified plant of the same species grown under the same conditions. Other techniques for evaluating tolerance to abiotic stress include, but are not limited to, measuring chlorophyll fluorescence, photosynthetic rates and gas exchange rates. Further assays for evaluating tolerance to abiotic stress are provided hereinbelow and in the Examples section which follows.

Drought tolerance assay—Soil-based drought screens are performed with plants overexpressing the polynucleotides detailed above. Seeds from control Arabidopsis plants, or other transgenic plants overexpressing nucleic acid of the invention are germinated and transferred to pots. Drought stress is obtained after irrigation is ceased. Transgenic and control plants are compared to each other when the majority of the control plants develop severe wilting. Plants are re-watered after obtaining a significant fraction of the control plants displaying a severe wilting. Plants are ranked comparing to controls for each of two criteria: tolerance to the drought conditions and recovery (survival) following re-watering.

Quantitative parameters of tolerance measured include, but are not limited to, the average wet and dry weight, growth rate, leaf size, leaf coverage (overall leaf area), the weight of the seeds yielded, the average seed size and the number of seeds produced per plant. Transformed plants not exhibiting substantial physiological and/or morphological effects, or exhibiting higher biomass than wild-type plants, are identified as drought stress tolerant plants

Salinity tolerance assay—Transgenic plants with tolerance to high salt concentrations are expected to exhibit better germination, seedling vigor or growth in high salt. Salt stress can be effected in many ways such as, for example, by irrigating the plants with a hyperosmotic solution, by cultivating the plants hydroponically in a hyperosmotic growth solution (e.g., Hoagland solution with added salt), or by culturing the plants in a hyperosmotic growth medium [e.g., 50% Murashige-Skoog medium (MS medium) with added salt]. Since different plants vary considerably in their tolerance to salinity, the salt concentration in the irrigation water, growth solution, or growth medium can be adjusted according to the specific characteristics of the specific plant cultivar or variety, so as to inflict a mild or moderate effect on the physiology and/or morphology of the plants (for guidelines as to appropriate concentration see, Bernstein and Kafkafi, Root Growth Under Salinity Stress In: Plant Roots, The Hidden Half 3rd ed. Waisel Y, Eshel A and Kafkafi U. (editors) Marcel Dekker Inc., New York, 2002, and reference therein).

For example, a salinity tolerance test can be performed by irrigating plants at different developmental stages with increasing concentrations of sodium chloride (for example 50 mM, 150 mM, 300 mM NaCl) applied from the bottom and from above to ensure even dispersal of salt. Following exposure to the stress condition the plants are frequently monitored until substantial physiological and/or morphological effects appear in wild type plants. Thus, the external phenotypic appearance, degree of chlorosis and overall success to reach maturity and yield progeny are compared between control and transgenic plants. Quantitative parameters of tolerance measured include, but are not limited to, the average wet and dry weight, growth rate, leaf size, leaf coverage (overall leaf area), the weight of the seeds yielded, the average seed size and the number of seeds produced per plant. Transformed plants not exhibiting substantial physiological and/or morphological effects, or exhibiting higher biomass than wild-type plants, are identified as abiotic stress tolerant plants.

Osmotic tolerance test—Osmotic stress assays (including sodium chloride and PEG assays) are conducted to determine if an osmotic stress phenotype was sodium chloride-specific or if it was a general osmotic stress related phenotype. Plants which are tolerant to osmotic stress may have more tolerance to drought and/or freezing. For salt and osmotic stress experiments, the medium is supplemented for example with 50 mM, 100 mM, 200 mM NaCl or 15%, 20% or 25% PEG.

Cold stress tolerance—One way to analyze cold stress is as follows. Mature (25 day old) plants are transferred to 4° C. chambers for 1 or 2 weeks, with constitutive light. Later on plants are moved back to greenhouse. Two weeks later damages from chilling period, resulting in growth retardation and other phenotypes, are compared between control and transgenic plants, by measuring plant weight (wet and dry), and by comparing growth rates measured as time to flowering, plant size, yield, and the like.

Heat stress tolerance—One way to measure heat stress tolerance is by exposing the plants to temperatures above 34° C. for a certain period. Plant tolerance is examined after transferring the plants back to 22° C. for recovery and evaluation after 5 days relative to internal controls (non-transgenic plants) or plants not exposed to neither cold or heat stress.

The biomass, vigor and yield of the plant can also be evaluated using any method known to one of ordinary skill in the art. Thus, for example, plant vigor can be calculated by the increase in growth parameters such as leaf area, fiber length, rosette diameter, plant fresh weight and the like per time.

As mentioned, the increase of plant yield can be determined by various parameters. For example, increased yield of rice may be manifested by an increase in one or more of the following: number of plants per growing area, number of panicles per plant, number of spikelets per panicle, number of flowers per panicle, increase in the seed filling rate, increase in thousand kernel weight (1000-weight), increase oil content per seed, increase starch content per seed, among others. An increase in yield may also result in modified architecture, or may occur because of modified architecture. Similarly, increased yield of soybean may be manifested by an increase in one or more of the following: number of plants per growing area, number of pods per plant, number of seeds per pod, increase in the seed filling rate, increase in thousand seed weight (1000-weight), reduce pod shattering, increase oil content per seed, increase protein content per seed, among others. An increase in yield may also result in modified architecture, or may occur because of modified architecture.

Thus, the present invention is of high agricultural value for increasing tolerance of plants to abiotic stress as well as promoting the yield, biomass and vigor of commercially desired crops.

According to another embodiment of the present invention, there is provided a food or feed comprising the plants or a portion thereof of the present invention.

In a further aspect the invention, the transgenic plants of the present invention or parts thereof are comprised in a food or feed product (e.g., dry, liquid, paste). A food or feed product is any ingestible preparation containing the transgenic plants, or parts thereof, of the present invention, or preparations made from these plants. Thus, the plants or preparations are suitable for human (or animal) consumption, i.e. the transgenic plants or parts thereof are more readily digested. Feed products of the present invention further include a oil or a beverage adapted for animal consumption.

It will be appreciated that the transgenic plants, or parts thereof, of the present invention may be used directly as feed products or alternatively may be incorporated or mixed with feed products for consumption. Furthermore, the food or feed products may be processed or used as is. Exemplary feed products comprising the transgenic plants, or parts thereof, include, but are not limited to, grains, cereals, such as oats, e.g. black oats, barley, wheat, rye, sorghum, corn, vegetables, leguminous plants, especially soybeans, root vegetables and cabbage, or green forage, such as grass or hay.

As used herein the term “about” refers to ±10%.

The terms “comprises”, “comprising”, “includes”, “including”, “having” and their conjugates mean “including but not limited to”.

The term “consisting of means “including and limited to”.

The term “consisting essentially of” means that the composition, method or structure may include additional ingredients, steps and/or parts, but only if the additional ingredients, steps and/or parts do not materially alter the basic and novel characteristics of the claimed composition, method or structure.

As used herein, the singular form “a”, “an” and “the” include plural references unless the context clearly dictates otherwise. For example, the term “a compound” or “at least one compound” may include a plurality of compounds, including mixtures thereof.

Throughout this application, various embodiments of this invention may be presented in a range format. It should be understood that the description in range format is merely for convenience and brevity and should not be construed as an inflexible limitation on the scope of the invention. Accordingly, the description of a range should be considered to have specifically disclosed all the possible subranges as well as individual numerical values within that range. For example, description of a range such as from 1 to 6 should be considered to have specifically disclosed subranges such as from 1 to 3, from 1 to 4, from 1 to 5, from 2 to 4, from 2 to 6, from 3 to 6 etc., as well as individual numbers within that range, for example, 1, 2, 3, 4, 5, and 6.

Whenever a numerical range is indicated herein, it is meant to include any cited numeral (fractional or integral) within the indicated range. The phrases “ranging/ranges between” a first indicate number and a second indicate number and “ranging/ranges from” a first indicate number “to” a second indicate number are used herein interchangeably and are meant to include the first and second indicated numbers and all the fractional and integral numerals therebetween.

As used herein the term “method” refers to manners, means, techniques and procedures for accomplishing a given task including, but not limited to, those manners, means, techniques and procedures either known to, or readily developed from known manners, means, techniques and procedures by practitioners of the chemical, pharmacological, biological, biochemical and medical arts.

It is appreciated that certain features of the invention, which are, for clarity, described in the context of separate embodiments, may also be provided in combination in a single embodiment. Conversely, various features of the invention, which are, for brevity, described in the context of a single embodiment, may also be provided separately or in any suitable subcombination or as suitable in any other described embodiment of the invention. Certain features described in the context of various embodiments are not to be considered essential features of those embodiments, unless the embodiment is inoperative without those elements.

Various embodiments and aspects of the present invention as delineated hereinabove and as claimed in the claims section below find experimental support in the following examples.

EXAMPLES

Reference is now made to the following examples, which together with the above descriptions illustrate some embodiments of the invention in a non limiting fashion.

Generally, the nomenclature used herein and the laboratory procedures utilized in the present invention include molecular, biochemical, microbiological and recombinant DNA techniques. Such techniques are thoroughly explained in the literature. See, for example, “Molecular Cloning: A laboratory Manual” Sambrook et al., (1989); “Current Protocols in Molecular Biology” Volumes I-III Ausubel, R. M., ed. (1994); Ausubel et al., “Current Protocols in Molecular Biology”, John Wiley and Sons, Baltimore, Md. (1989); Perbal, “A Practical Guide to Molecular Cloning”, John Wiley & Sons, New York (1988); Watson et al., “Recombinant DNA”, Scientific American Books, New York; Birren et al. (eds) “Genome Analysis: A Laboratory Manual Series”, Vols. 1-4, Cold Spring Harbor Laboratory Press, New York (1998); methodologies as set forth in U.S. Pat. Nos. 4,666,828; 4,683,202; 4,801,531; 5,192,659 and 5,272,057; “Cell Biology: A Laboratory Handbook”, Volumes I-III Cellis, J. E., ed. (1994); “Current Protocols in Immunology” Volumes I-III Coligan J. E., ed. (1994); Stites et al. (eds), “Basic and Clinical Immunology” (8th Edition), Appleton & Lange, Norwalk, Conn. (1994); Mishell and Shiigi (eds), “Selected Methods in Cellular Immunology”, W. H. Freeman and Co., New York (1980); available immunoassays are extensively described in the patent and scientific literature, see, for example, U.S. Pat. Nos. 3,791,932; 3,839,153; 3,850,752; 3,850,578; 3,853,987; 3,867,517; 3,879,262; 3,901,654; 3,935,074; 3,984,533; 3,996,345; 4,034,074; 4,098,876; 4,879,219; 5,011,771 and 5,281,521; “Oligonucleotide Synthesis” Gait, M. J., ed. (1984); “Nucleic Acid Hybridization” Hames, B. D., and Higgins S. J., eds. (1985); “Transcription and Translation” Hames, B. D., and Higgins S. J., Eds. (1984); “Animal Cell Culture” Freshney, R. I., ed. (1986); “Immobilized Cells and Enzymes” IRL Press, (1986); “A Practical Guide to Molecular Cloning” Perbal, B., (1984) and “Methods in Enzymology” Vol. 1-317, Academic Press; “PCR Protocols: A Guide To Methods And Applications”, Academic Press, San Diego, Calif. (1990); Marshak et al., “Strategies for Protein Purification and Characterization—A Laboratory Course Manual” CSHL Press (1996); all of which are incorporated by reference as if fully set forth herein. Other general references are provided throughout this document. The procedures therein are believed to be well known in the art and are provided for the convenience of the reader. All the information contained therein is incorporated herein by reference.

Example 1
Differential Expression of miRNAs in Maize Plant Under Optimal Versus Abiotic Stress Conditions

Experimental Procedures

Plant Material

Corn seeds were obtained from Galil seeds (Israel). Corn variety GSO308 was used in all experiments. Plants were grown at 24° C. under a 16 hr light: 8 hr dark regime.

Drought Induction

Salt Induction

For salinity induction, irrigation with regular water was substituted by irrigation with 300 mM NaCl solution in the stress group, for overall 2-3 irrigations in a period of four or six days.

Heat Induction

For induction of heat shock, the stress group plants were exposed to a high temperature (37° C.) for one hour.

For all stress analyses, tissue samples from both experimental groups are then used for RNA analysis, as described below.

Total RNA Extraction

Total RNA of leaf or root samples from four to eight biological repeats were extracted using the mirVana™ kit (Ambion, Austin, Tex.) by pooling 3-4 plants to one biological repeat. RNA samples from the two experimental groups of each assay were then loaded onto a microarray for small RNA expression comparison and subsequent identification of differential small RNAs, as described below.

Microarray Design

Custom microarrays were manufactured by Agilent Technologies by in situ synthesis. The first generation microarray consisted of a total of 13619 non-redundant DNA probes, the majority of which arose from deep sequencing data and included different small RNA molecules (i.e. miRNA, siRNA and predicted small RNA sequences), with each probe being printed once. An in-depth analysis of the first generation microarray, which included hybridization experiments as well as structure and orientation verifications on all its small RNAs, resulted in the formation of an improved, second generation, microarray. The second generation microarray consists of a total 4721 non-redundant DNA 45-nucleotide long probes for all known plant small RNAs, with 912 sequences (19.32%) from Sanger version 15 and the rest (3809), encompassing miRNAs (968=20.5%), siRNAs (1626=34.44%) and predicted small RNA sequences (1215=25.74%), from deep sequencing data accumulated by the inventors, with each probe being printed in triplicate. An additional microarray, consisting of 707 sequences from Sanger version 15 was also used in this invention.

Results

Wild type maize plants were allowed to grow at standard, optimal conditions or stress conditions for a period of time as specified above, at the end of which they were evaluated for stress tolerance. Three to four plants from each group were grouped as a biological repeat. Four to eight biological repeats were obtained for each group, and RNA was extracted from leaf or root tissue. The expression level of the maize small RNAs was analyzed by high throughput microarray to identify small RNAs that were differentially expressed between the experimental groups.

Tables 1-5 below present sequences that were found to be differentially expressed in corn grown under drought conditions (lasting four or six days) compared to optimal growth conditions. To clarify, the sequence of an up-regulated miRNA is induced under stress conditions and the sequence of a down-regulated miRNA is repressed under stress conditions.

TABLE 1

Differentially Expressed Small RNAs in Plants Growing

under Drought (4 days) versus Optimal Conditions.

Mature
Stem

Sequence/
Loop/

SEQ ID
SEQ ID

Leaf

Mir Name
NO:
NO:
Direction
4 d

Predicted folded 24-
101

up
2.65

nts-long seq 52214

Predicted folded 24-
1

down
2.64

nts-long seq 52255

Predicted siRNA 55507
102

up
4.82

Predicted siRNA 55629
103

up
4.97

Predicted siRNA 55869
104

up
2.23

Predicted siRNA 55937
2

down
2.93

Predicted siRNA 55979
105

up
2.58

Predicted siRNA 56759
106

up
2.22

Predicted siRNA 57049
107

up
2.14

Predicted siRNA 57283
108

up
2.52

Predicted siRNA 58170
3

down
2.22

Predicted zma mir 47934
4

down
2.16

Predicted zma mir 48043
109

up
2.04

Predicted zma mir 48120
5

down
7.44

Predicted zma mir 48193
110

up
3.19

Predicted zma mir 48408
6

down
3.58

Predicted zma mir 48451
7

down
2.69

Predicted zma mir 48462
8

down
3.4

Predicted zma mir 48514
111

up
2.2

Predicted zma mir 48520
9

down
2.12

Predicted zma mir 48669
10

down
2.78

Predicted zma mir 48682
11

down
3.11

Predicted zma mir 48841
12

down
4.52

Predicted zma mir 48966
13

down
3.02

Predicted zma mir 49156
14

down
2.08

Predicted zma mir 49199
15

down
2.04

Predicted zma mir 50109
112

up
2.18

Predicted zma mir 50425
113

up
2.31

tae-miR1125
114
217
up
2.07

TABLE 2

Differentially Expressed Small RNAs in Plants Growing

under Drought (6 days) versus Optimal Conditions.

Mature

Fold
Fold

Sequence/
Stem Loop/
old

Change
Change

Mir Name
SEQ ID NO:
SEQ ID NO:
numbers
Direction
Leaf 6 d
Root 6 d

ath-miR164c
115
218
218
up
1.94
1.51

osa-
116
219
219
up
3.69

miR2907a

Predicted
117

up
3.94

folded 24-

nts-long seq

52214

Predicted
16

down
2.95

folded 24-

nts-long seq

52255

Predicted
118

up
2.09

folded 24-

nts-long seq

52285

Predicted
119

up
2.99

folded 24-

nts-long seq

52953

Predicted
120

up
4.24

folded 24-

nts-long seq

53693

Predicted
121

up
9.27

siRNA 55507

Predicted
122

up
8.68

siRNA 55629

Predicted
123

up
2.93

siRNA 55775

Predicted
124

up
3.08

siRNA 55869

Predicted
17

down
2.82

siRNA 55937

Predicted
18

down
2.86

siRNA 56066

Predicted
125

up
2.69

siRNA 56759

Predicted
126

up
2.67

siRNA 57049

Predicted
127

up
3.91

siRNA 57283

Predicted
19

down
5.99

siRNA 58170

Predicted
128

up
2.73

siRNA 58574

Predicted
129

up
4.18

siRNA 60433

Predicted
20

down
2.47

zma mir

47934

Predicted
130

up
2.4

zma mir

48043

Predicted
21

down
9.3

zma mir

48120

Predicted
131

up
5.34

zma mir

48193

Predicted
22

down
3.23

zma mir

48408

Predicted
23

down
2.69

zma mir

48451

Predicted
24

down
5.49

zma mir

48462

Predicted
25

down
6.19

zma mir

48520

Predicted
26

down
2.98

zma mir

48653

Predicted
27

down
2.33

zma mir

48669

Predicted
28

down
2.86

zma mir

48682

Predicted
29

down
5.01

zma mir

48841

Predicted
30

down
2.54

zma mir

48966

Predicted
31

down
4.39

zma mir

49156

Predicted
32

down
2.8

zma mir

49199

sbi-miR164c
132
220
220
up
1.86

tae-miR1125
133
222
221
up
2.58

TABLE 3

Differentially Expressed Small RNAs in Plants Growing

under High Salt (4 days) versus Optimal Conditions

Fold

Change

SEQ ID

Leaf

Name Mir
NO:
Direction
4 d

folded 24-nts-long
33
down
2.34

Predicted seq 54187

siRNA 54673 Predicted
134
up
2.08

siRNA 54895 Predicted
135
up
2.17

siRNA 55242 Predicted
136
up
2.09

siRNA 55246 Predicted
137
up
2.64

siRNA 55344 Predicted
138
up
2.35

siRNA 55402 Predicted
139
up
2.46

siRNA 55909 Predicted
140
up
2.06

siRNA 56060 Predicted
141
up
2.31

siRNA 56305 Predicted
142
up
2.43

siRNA 56314 Predicted
143
up
2.31

siRNA 56506 Predicted
144
up
2.3

siRNA 56651 Predicted
145
up
2.42

siRNA 57169 Predicted
146
up
2.25

siRNA 57197 Predicted
147
up
2.15

siRNA 58212 Predicted
148
up
2.66

siRNA 59035 Predicted
149
up
6.12

siRNA 59453 Predicted
150
up
2.73

zma mir 47990 Predicted
34
down
2.69

zma mir 48459 Predicted
45 (35)
down
2.37

zma mir 48490 Predicted
151
up
3.12

zma mir 48753 Predicted
36
down
2.11

zma mir 48783 Predicted
152
up
2.35

zma mir 48824 Predicted
37
down
2.08

zma mir 48848 Predicted
38
down
2.06

zma mir 49575 Predicted
39
down
2.49

zma mir 49817 Predicted
40
down
2.8

zma mir 49855 Predicted
41
down
2.69

zma mir 49862 Predicted
52 (42)
down
2.16

zma mir 50145 Predicted
153
up
3.92

TABLE 4

Differentially Expressed Small RNAs in Plants Growing

under High Salt (6 days) versus Optimal Conditions

Fold

Change

SEQ ID

Leaf

Mir Name
NO:
Direction
6 d

Predicted folded 24-
43
down
2.2

nts-long seq 54187

Predicted siRNA 54673
154
up
5.57

Predicted siRNA 54895
155
up
6.11

Predicted siRNA 55242
156
up
5.91

Predicted siRNA 55246
157
up
6.3

Predicted siRNA 55344
158
up
8.56

Predicted siRNA 55402
159
up
4.96

Predicted siRNA 55909
160
up
2.58

Predicted siRNA 56060
161
up
2.95

Predicted siRNA 56305
162
up
4.66

Predicted siRNA 56314
163
up
5.97

Predicted siRNA 56506
164
up
5.98

Predicted siRNA 56651
165
up
5.5

Predicted siRNA 57169
166
up
5.52

Predicted siRNA 57197
167
up
3.98

Predicted siRNA 58212
168
up
3.29

Predicted siRNA 59035
169
up
8.47

Predicted siRNA 59453
170
up
2.12

Predicted zma mir 47990
44
down
4.22

Predicted zma mir 48459
45 (35)
down
3.21

Predicted zma mir 48490
171
up
2.71

Predicted zma mir 48753
46
down
3.3

Predicted zma mir 48783
172
up
2.69

Predicted zma mir 48824
47
down
2.17

Predicted zma mir 48848
48
down
2.38

Predicted zma mir 49575
49
down
2.07

Predicted zma mir 49817
50
down
3.26

Predicted zma mir 49855
51
down
3.01

Predicted zma mir 49862
52 (42)
down
2.88

Predicted zma mir 50145
173
up
3.66

TABLE 5

Differentially Expressed Small RNAs in Plants Growing

under Heat Shock (1 hour) versus Optimal Conditions

Fold

Change

SEQ ID

Leaf

Mir Name
NO:
Direction
1 hour

Predicted folded 24-
174
up
2.7

nts-long seq 50957

Predicted folded 24-
175
up
3.56

nts-long seq 51391

Predicted folded 24-
176
up
2.47

nts-long seq 51709

Predicted folded 24-
177
up
2.46

nts-long seq 52606

Predicted folded 24-
178
up
2.47

nts-long seq 52682

Predicted folded 24-
53
down
2.25

nts-long seq 52724

Predicted folded 24-
179
up
4.42

nts-long seq 53851

Predicted folded 24-
54
down
4.51

nts-long seq 53866

Predicted siRNA 54548
180
up
3.72

Predicted siRNA 54566
181
up
4.34

Predicted siRNA 54666
182
up
2.42

Predicted siRNA 54735
55
down
4.98

Predicted siRNA 55208
56
down
3.8

Predicted siRNA 55684
183
up
3.16

Predicted siRNA 55793
184
up
2.62

Predicted siRNA 55824
185
up
6.85

Predicted siRNA 55968
186
up
2.35

Predicted siRNA 56154
187
up
2.03

Predicted siRNA 56225
188
up
3.61

Predicted siRNA 56396
57
down
3.08

Predicted siRNA 56582
189
up
2.51

Predicted siRNA 56658
190
up
2.19

Predicted siRNA 56664
191
up
3.07

Predicted siRNA 56791
58
down
4.75

Predicted siRNA 56885
192
up
2.24

Predicted siRNA 57061
193
up
3.15

Predicted siRNA 57689
59
down
2.69

Predicted siRNA 58105
194
up
2.55

Predicted siRNA 58108
60
down
6.63

Predicted siRNA 58158
61
down
3.98

Predicted siRNA 58387
195
up
2.77

Predicted siRNA 58717
196
up
3.46

Predicted siRNA 58720
62
down
3.54

Predicted siRNA 58740
63
down
2.88

Predicted siRNA 59056
64
down
2.29

Predicted siRNA 59211
65
down
5.31

Predicted siRNA 59300
66
down
3.04

Predicted siRNA 59379
67
down
2.32

Predicted siRNA 59410
68
down
6.53

Predicted siRNA 59474
69
down
6.01

Predicted siRNA 59580
197
up
3.95

Predicted siRNA 59736
70
down
3.34

Predicted siRNA 59799
71
down
2.22

Predicted siRNA 59800
72
down
2

Predicted siRNA 59817
198
up
7.86

Predicted siRNA 59820
73
down
3.79

Predicted siRNA 59851
74
down
9.21

Predicted siRNA 59918
75
down
9.26

Predicted siRNA 59935
76
down
2.06

Predicted siRNA 59937
77
down
2.61

Predicted siRNA 59987
199
up
12.68

Predicted siRNA 60036
200
up
2.16

Predicted siRNA 60421
78
down
6.25

Predicted siRNA 60533
79
down
6.03

Predicted siRNA 60635
201
up
3.01

Predicted siRNA 60718
202
up
2.18

Predicted siRNA 60742
203
up
2.07

Predicted siRNA 60833
80
down
2.45

Predicted siRNA 60993
204
up
2.37

Predicted siRNA 61212
81
down
2.14

Predicted siRNA 61236
82
down
2.27

Predicted zma mir 47966
205
up
3.04

Predicted zma mir 48327
83
down
2.04

Predicted zma mir 48479
206
up
3.92

Predicted zma mir 48482
207
up
2.91

Predicted zma mir 48489
84
down
2.98

Predicted zma mir 48790
208
up
2.04

Predicted zma mir 48905
209
up
3.72

Predicted zma mir 49248
85
down
4.94

Predicted zma mir 49259
210
up
3.77

Predicted zma mir 49310
86
down
4.45

Predicted zma mir 49642
211
up
4.3

Predicted zma mir 49718
212
up
3.57

Predicted zma mir 49952
87
down
2.41

Predicted zma mir 50085
213
up
2.43

Predicted zma mir 50120
88
down
2.92

Predicted zma mir 50166
89
down
2.9

Predicted zma mir 50256
90
down
6.25

Predicted zma mir 50289
91
down
2.01

Predicted zma mir 50388
92
down
2.43

Predicted zma mir 50449
214
up
2.25

Predicted zma mir 50453
93
down
7.88

Predicted zma mir 50480
94
down
2.21

Predicted zma mir 50481
95
down
2.3

Predicted zma mir 50483
96
down
2.23

Predicted zma mir 50486
215
up
2.34

Predicted zma mir 50522
216
up
2.73

Predicted zma mir 50570
97
down
2.07

Predicted zma mir 50682
98
down
2.21

Predicted zma mir 50695
99
down
2.02

Predicted zma mir 50701
100
down
3.38

Example 2
Identification of Homologous and Orthologous Sequences of Differential Small RNAs Associated with Enhanced Abiotic Stress Tolerance

The small RNA sequences of the invention that were either down- or up-regulated under abiotic stress conditions were examined for homologous and orthologous sequences using the miRBase database (www.mirbase.org/) and the Plant MicroRNA Database (PMRD, http://bioinformatics.cau.edu.cn/PMRD). The mature miRNA sequences that are homologous or orthologous to the miRNAs of the invention (listed in Tables 1-5 above) are found using miRNA public databases, having at least 75% identity of the mature small RNA, and are summarized in Tables 6-8 below.

TABLE 6

Homologs of Small RNAs Listed in Tables 1-2 Above

(Differentially Expressed Under Drought Stress)

Homolog

Mature

Stem-loop

Mir
Sequence/
Mir
Homologs
Sequence/
Homolog
Sequence/

Name
SEQ ID NO:
Length
Names
SEQ ID NO:
Length
SEQ ID NO:
% Identity

Predicted
133
21
aly-
223
21
417
0.95

zma mir

miR168a*

50425

hvu-
224
24
418
0.95

miR168-3p

osa-
225
24
419
0.95

miR168a-

3p

zma-
226
20
420
0.9

miR168a*

zma-
227
20
421
0.95

miR168b*

osa-
116
22
osa-
264
22
458
1

miR2907a

miR2907b

osa-
265
22
459
1

miR2907c

osa-
266
22
460
1

miR2907d

ath-
115
21
aly-
267
21
461
0.95

miR164c

miR164a

aly-
268
21
462
0.95

miR164b

aly-
269
21
463
1

miR164c

ath-
270
21
464
0.95

miR164a

ath-
271
21
465
0.95

miR164b

bdi-
272
21
466
0.95

miR164a

bdi-
273
21
467
0.95

miR164b

bdi-
274
21
468
0.95

miR164c

bdi-
275
21
469
0.95

miR164d

bdi-
276
21
470
0.95

miR164e

bdi-
277
21
471
0.86

miR164f

bna-
278
21
472
0.95

miR164

bra-
279
21
473
0.95

miR164a

cav-
280
21
474
0.95

miR164

csi-miR164
281
21
475/605
0.95

ctr-miR164
282
21
476
0.95

far-
283
21
477
0.9

miR164a

far-
284
21
478
0.9

miR164b

gar-
285
21
479
0.86

miR164

ghr-
286
21
480
0.95

miR164

gma-
287
21
481
0.95

miR164

ini-miR164
288
21
482
0.9

mtr-
289
21
483
0.95

miR164a

mtr-
290
21
484
0.95

miR164b

mtr-
291
21
485
0.95

miR164c

mtr-
292
21
486
0.9

miR164d

osa-
293
21
487
0.95

miR164a

osa-
294
21
488
0.95

miR164b

osa-
295
21
489
0.9

miR164c

osa-
296
21
490
0.95

miR164d

osa-
297
21
491
0.95

miR164e

osa-
298
21
492
0.95

miR164f

ppl-
299
21
493
0.95

miR164

ptc-
300
21
494
0.95

miR164a

ptc-
301
21
495
0.95

miR164b

ptc-
302
21
496
0.95

miR164c

ptc-
303
21
497
0.95

miR164d

ptc-
304
21
498
0.95

miR164e

ptc-
305
21
499
0.9

miR164f

rco-
306
21
500
0.95

miR164a

rco-
307
21
501
0.95

miR164b

rco-
308
21
502
0.95

miR164c

rco-
309
21
503
0.9

miR164d

sbi-
310
21
504
0.95

miR164

sbi-
311
21
505
0.95

miR164b

sbi-
312
21
506
0.9

miR164c

sbi-
313
21
507
0.95

miR164d

sbi-
314
21
508
0.95

miR164e

tae-
315
21
509
0.95

miR164

tae-
316
21
510
0.95

miR164b

tcc-
317
21
511
0.95

miR164a

tcc-
318
21
512
0.95

miR164b

tcc-
319
21
513
0.9

miR164c

vvi-
320
21
514
0.95

miR164a

vvi-
321
21
515
0.9

miR164b

vvi-
322
21
516
0.95

miR164c

vvi-
323
21
517
0.95

miR164d

zma-
324
21
518
0.95

miR164a

zma-
325
21
519
0.95

miR164b

zma-
326
21
520
0.95

miR164c

zma-
327
21
521
0.95

miR164d

zma-
411
21
522/606
0.90/0.95

miR164e

zma-
412
21
523/607
0.95

miR164f

zma-
330
21
524/608
0.95

miR164g

zma-
413
21
525/609
0.95

miR164h

sbi-
132
21
aly-
332
21
526
0.86

miR164c

miR164a

aly-
333
21
527
0.86

miR164b

aly-
334
21
528
0.9

miR164c

ath-
335
21
529
0.86

miR164a

ath-
336
21
530
0.86

miR164b

ath-
337
21
531
0.9

miR164c

bdi-
338
21
532
0.86

miR164a

bdi-
339
21
533
0.86

miR164b

bdi-
340
21
534
0.86

miR164c

bdi-
341
21
535
0.86

miR164d

bdi-
342
21
536
0.86

miR164e

bdi-
343
21
537
0.76

miR164f

bna-
344
21
538
0.86

miR164

bra-
345
21
539
0.86

miR164a

cav-
346
21
540
0.86

miR164

csi-miR164
347
21
541/611
0.86

ctr-miR164
348
21
542
0.86

far-
349
21
543
0.81

miR164a

far-
350
21
544
0.81

miR164b

gar-
351
21
545
0.86

miR164

ghr-
352
21
546
0.86

miR164

gma-
353
21
547
0.86

miR164

ini-miR164
354
21
548
0.86

mtr-
355
21
549
0.86

miR164a

mtr-
356
21
550
0.86

miR164b

mtr-
357
21
551
0.86

miR164c

mtr-
358
21
552
0.81

miR164d

osa-
359
21
553
0.86

miR164a

osa-
360
21
554
0.86

miR164b

osa-
361
21
555
0.81

miR164c

osa-
362
21
556
0.86

miR164d

osa-
363
21
557
0.95

miR164e

osa-
364
21
558
0.86

miR164f

ppl-
365
21
559
0.86

miR164

ptc-
366
21
560
0.86

miR164a

ptc-
367
21
561
0.86

miR164b

ptc-
368
21
562
0.86

miR164c

ptc-
369
21
563
0.86

miR164d

ptc-
370
21
564
0.86

miR164e

ptc-
371
21
565
0.81

miR164f

rco-
372
21
566
0.86

miR164a

rco-
373
21
567
0.86

miR164b

rco-
374
21
568
0.86

miR164c

rco-
375
21
569
0.81

miR164d

sbi-
376
21
570
0.86

miR164

sbi-
377
21
571
0.86

miR164b

sbi-
378
21
572
0.86

miR164d

sbi-
379
21
573
0.86

miR164e

tae-
380
21
574
0.86

miR164

tae-
381
21
575
0.86

miR164b

tcc-
382
21
576
0.86

miR164a

tcc-
383
21
577
0.86

miR164b

tcc-
384
21
578
0.81

miR164c

vvi-
385
21
579
0.86

miR164a

vvi-
386
21
580
0.81

miR164b

vvi-
387
21
581
0.86

miR164c

vvi-
388
21
582
0.86

miR164d

zma-
389
21
583
0.86

miR164a

zma-
390
21
584
0.86

miR164b

zma-
391
21
585
0.86

miR164c

zma-
392
21
586
0.86

miR164d

zma-
414
21
587/611
1.00/0.86

miR164e

zma-
415
21
588/612
0.86

miR164f

zma-
395
21
589/613
0.86

miR164g

zma-
416
21
590/614
0.90/0.86

miR164h

Predicted
112
21
aly-
397
21
591
0.9

zma mir

miR827

50109

ath-
398
21
592
0.9

miR827

bdi-
399
21
593
1

miR827

csi-
400
21
594
0.95

miR827

ghr-
401
21
595
0.95

miR827a

ghr-
402
21
596
0.95

miR827b

ghr-
403
21
597
0.95

miR827c

osa-
404
21
598
0.86

miR827

osa-
405
21
599
1

miR827a

osa-
406
21
600
1

miR827b

ptc-
407
21
601
0.86

miR827

ssp-
408
21
602
1

miR827

tcc-
409
21
603
0.95

miR827

zma-
410
21
604
1

miR827

TABLE 7

Homologs of Small RNAs Listed in Tables 3-4 Above

(Differentially Expressed Under Salinity Stress)

Mature

Homolog

Stem Loop

Mir
Sequence/
Mir
Homologs
Sequence/
Homolog
Sequence/

Name
SEQ ID NO:
Length
Names
SEQ ID NO:
Length
SEQ ID NO:
% Identity

Predicted
52
21
bdi-
615
21
627
0.9

zma mir

miR528

49862

osa-
616
21
628
0.9

miR528

sbi-
617
21
629
0.9

miR528

ssp-
618
21
630
0.9

miR528

zma-
619
21
631
0.9

miR528a

zma-
620
21
632
0.9

miR528b

Predicted
45
21
bdi-
621
21
633
0.9

zma mir

miR528

48459

osa-
622
21
634
0.9

miR528

sbi-
623
21
635
0.9

miR528

ssp-
624
21
636
0.9

miR528

zma-
625
21
637
0.9

miR528a

zma-
626
21
638
0.9

miR528b

TABLE 8

Homologs of Small RNAs Listed in Table 5 Above (Differentially

Expressed Under Heat Shock Stress)

Stem Loop

Mir
Mature
Mir
Homologs
Sequence/
Homolog
Sequence/

Name
Sequence
Length
Names
SEQ ID NO:
Length
SEQ ID NO:
% Identity

Predicted
85
21
zma-
639
21
640
0.9

zma mir

miR398b*

49248

Example 3
Verification of Expression of Small RNA Molecules Associated with Abiotic Stress

Small RNAs that are potentially associated with improved abiotic or biotic stress tolerance are first identified by proprietary computational algorithms that analyze RNA expression profiles alongside publicly available gene and protein databases. A high throughput screening is performed on microarrays loaded with miRNAs that were found to be differential under multiple stress and optimal environmental conditions and in different plant tissues. Following identification of small RNA molecules potentially involved in maize abiotic stress tolerance using bioinformatics tools, the actual mRNA levels in an experiment are determined using reverse transcription assay followed by quantitative Real-Time PCR (qRT-PCR) analysis. RNA levels are compared between different tissues, developmental stages, growing conditions and/or genetic backgrounds incorporated in each experiment. A correlation analysis between mRNA levels in different experimental conditions/genetic backgrounds is applied and used as evidence for the role of the gene in the plant.

Experimental Procedures

Root and leaf samples are freshly excised from maize plants grown as described above on Murashige-Skoog (Duchefa). Experimental plants are grown either under optimal irrigation conditions, salt levels or temperatures to be used as a control group, or under stressful conditions of prolonged water deprivation, high salt concentrations and a heat shock treatment at a temperature higher than 34° C. to be used as stress-induced groups to assess the drought, salinity and heat shock tolerance, respectively, of control versus transgenic plants. Total RNA is extracted from the different tissues, using mirVana™ commercial kit (Ambion) following the protocol provided by the manufacturer. For measurement and verification of messenger RNA (mRNA) expression level of all genes, reverse transcription followed by quantitative real time PCR (qRT-PCR) is performed on total RNA extracted from each plant tissue (i.e., roots and leaves) from each experimental group as described above. To elaborate, reverse transcription is performed on 1 μg total RNA, using a miScript Reverse Transcriptase kit (Qiagen), following the protocol suggested by the manufacturer. Quantitative RT-PCR is performed on cDNA (0.1 ng/μl final concentration), using a miScript SYBR GREEN PCR (Qiagen) forward (based on the miR sequence itself) and reverse primers (supplied with the kit). All qRT-PCR reactions are performed in triplicates using an ABI7500 real-time PCR machine, following the recommended protocol for the machine. To normalize the expression level of miRNAs associated with enhanced NUE between the different tissues and growing conditions of the maize plants, normalizer miRNAs are selected and used for comparison. Normalizer miRNAs, which are miRNAs with unchanged expression level between tissues and growing conditions, are custom selected for each experiment. The normalization procedure consists of second-degree polynomial fitting to a reference data (which is the median vector of all the data—excluding outliers) as described by Rosenfeld et al (2008, Nat Biotechnol, 26(4):462-469). A summary of primers for the differential small RNA molecules that will be used in the qRT-PCR validation and analysis is presented in Tables 9-11 below.

TABLE 9

Primers for qRT-PCR Analysis of small RNAs

Differentially Expressed in Drought

Primer Sequence/
Primer

miR Name
SEQ ID NO:
length
Tm

ath-miR164c
641
21
64

osa-miR2907a
642
20
67

Predicted folded 24-nts-long seq
643
24
66

52214

Predicted folded 24-nts-long seq
644
24
59

52255

Predicted folded 24-nts-long seq
645
24
64

52285

Predicted folded 24-nts-long seq
646
24
64

52953

Predicted folded 24-nts-long seq
647
24
62

53693

Predicted siRNA 55507
648
22
59

Predicted siRNA 55629
649
22
62

Predicted siRNA 55775
650
21
61

Predicted siRNA 55869
651
23
61

Predicted siRNA 55937
652
23
60

Predicted siRNA 55979
653
24
60

Predicted siRNA 56066
654
25
59

Predicted siRNA 56759
655
23
59

Predicted siRNA 57049
656
23
61

Predicted siRNA 57283
657
21
66

Predicted siRNA 58170
658
22
60

Predicted siRNA 58574
659
23
59

Predicted siRNA 60433
660
24
66

Predicted siRNA 60529
661
22
61

Predicted zma mir 47934
662
25
60

Predicted zma mir 48043
663
21
61

Predicted zma mir 48120
664
22
61

Predicted zma mir 48193
665
26
60

Predicted zma mir 48408
666
21
58

Predicted zma mir 48451
667
26
60

Predicted zma mir 48462
668
26
59

Predicted zma mir 48514
669
22
61

Predicted zma mir 48520
670
29
59

Predicted zma mir 48653
671
23
58

Predicted zma mir 48669
672
24
60

Predicted zma mir 48682
673
23
59

Predicted zma mir 48841
674
24
59

Predicted zma mir 48966
675
25
61

Predicted zma mir 49156
676
26
60

Predicted zma mir 49199
677
22
60

Predicted zma mir 50109
678
25
59

Predicted zma mir 50425
679
22
60

sbi-miR164c
680
21
58

tae-miR1125
682
24
66

TABLE 10

Primers for qRT-PCR Analysis of small RNAs

Differentially Expressed in Salt Stress

SEQ ID
Primer

miR Name
NO:
length
Tm

Predicted folded 24-nts-long seq
683
24
65

54187

Predicted siRNA 54673
684
24
63

Predicted siRNA 54895
685
23
59

Predicted siRNA 55242
686
21
63

Predicted siRNA 55246
687
27
60

Predicted siRNA 55344
688
22
60

Predicted siRNA 55402
689
23
60

Predicted siRNA 55909
690
24
63

Predicted siRNA 56060
691
22
59

Predicted siRNA 56305
692
21
62

Predicted siRNA 56314
693
23
59

Predicted siRNA 56506
694
26
59

Predicted siRNA 56651
695
22
64

Predicted siRNA 57169
696
24
64

Predicted siRNA 57197
697
25
59

Predicted siRNA 58212
698
18
60

Predicted siRNA 59035
699
22
61

Predicted siRNA 59453
700
18
60

Predicted zma mir 47990
701
26
59

Predicted zma mir 48459
702
23
61

Predicted zma mir 48490
703
25
59

Predicted zma mir 48753
704
24
59

Predicted zma mir 48783
705
24
60

Predicted zma mir 48824
706
22
60

Predicted zma mir 48848
707
23
60

Predicted zma mir 49575
708
21
59

Predicted zma mir 49817
709
22
59

Predicted zma mir 49855
710
27
59

Predicted zma mir 49862
711
21
60

Predicted zma mir 50145
712
24
60

TABLE 11

Primers for qRT-PCR Analysis of small RNAs

Differentially Expressed in Heat Stress

SEQ ID
Primer

miR Name
NO:
length
Tm

Predicted folded 24-nts-long seq
713
24
59

50957

Predicted folded 24-nts-long seq
714
24
64

51391

Predicted folded 24-nts-long seq
715
24
64

51709

Predicted folded 24-nts-long seq
716
24
65

52606

Predicted folded 24-nts-long seq
717
24
65

52682

Predicted folded 24-nts-long seq
718
24
66

52724

Predicted folded 24-nts-long seq
719
26
59

53851

Predicted folded 24-nts-long seq
720
24
64

53866

Predicted siRNA 54548
721
24
60

Predicted siRNA 54566
722
22
66

Predicted siRNA 54666
723
22
62

Predicted siRNA 54735
724
24
63

Predicted siRNA 55208
725
26
59

Predicted siRNA 55684
726
22
60

Predicted siRNA 55793
727
25
59

Predicted siRNA 55824
728
23
59

Predicted siRNA 55968
729
24
61

Predicted siRNA 56154
730
24
61

Predicted siRNA 56225
731
24
61

Predicted siRNA 56396
732
24
60

Predicted siRNA 56582
733
21
61

Predicted siRNA 56658
734
24
67

Predicted siRNA 56664
735
21
62

Predicted siRNA 56791
736
26
59

Predicted siRNA 56885
737
24
59

Predicted siRNA 57061
738
22
62

Predicted siRNA 57689
739
20
61

Predicted siRNA 58105
740
24
64

Predicted siRNA 58108
741
20
61

Predicted siRNA 58158
742
21
64

Predicted siRNA 58387
743
27
60

Predicted siRNA 58717
744
24
61

Predicted siRNA 58720
745
20
60

Predicted siRNA 58740
746
24
59

Predicted siRNA 59056
747
23
59

Predicted siRNA 59211
748
21
60

Predicted siRNA 59300
749
20
64

Predicted siRNA 59379
750
20
59

Predicted siRNA 59410
751
22
60

Predicted siRNA 59474
752
19
61

Predicted siRNA 59580
753
24
64

Predicted siRNA 59736
754
19
61

Predicted siRNA 59799
755
20
64

Predicted siRNA 59800
756
20
63

Predicted siRNA 59817
757
21
60

Predicted siRNA 59820
758
20
59

Predicted siRNA 59851
759
22
60

Predicted siRNA 59918
760
21
60

Predicted siRNA 59935
761
25
66

Predicted siRNA 59937
762
25
64

Predicted siRNA 59987
763
22
60

Predicted siRNA 60036
764
24
61

Predicted siRNA 60421
765
27
59

Predicted siRNA 60533
766
20
63

Predicted siRNA 60635
767
29
59

Predicted siRNA 60718
768
25
59

Predicted siRNA 60742
769
24
59

Predicted siRNA 60833
770
21
60

Predicted siRNA 60993
771
25
60

Predicted siRNA 61212
772
21
59

Predicted siRNA 61236
773
25
60

Predicted zma mir 47966
774
26
59

Predicted zma mir 48327
775
22
59

Predicted zma mir 48479
776
24
60

Predicted zma mir 48482
777
24
59

Predicted zma mir 48489
778
22
60

Predicted zma mir 48790
779
22
59

Predicted zma mir 48905
780
25
59

Predicted zma mir 49248
781
21
62

Predicted zma mir 49259
782
22
60

Predicted zma mir 49310
783
21
63

Predicted zma mir 49642
784
22
66

Predicted zma mir 49718
785
22
59

Predicted zma mir 49952
786
23
67

Predicted zma mir 50085
787
25
59

Predicted zma mir 50120
788
23
61

Predicted zma mir 50166
789
22
60

Predicted zma mir 50256
790
22
61

Predicted zma mir 50289
791
19
58

Predicted zma mir 50388
792
24
60

Predicted zma mir 50449
793
23
59

Predicted zma mir 50453
794
22
61

Predicted zma mir 50480
795
20
64

Predicted zma mir 50481
796
20
64

Predicted zma mir 50483
797
20
63

Predicted zma mir 50486
798
22
61

Predicted zma mir 50522
799
22
61

Predicted zma mir 50570
800
20
60

Predicted zma mir 50682
801
23
59

Predicted zma mir 50695
802
22
58

Predicted zma mir 50701
803
19
60

Alternative RT-PCR Validation Method of Selected microRNAs of the Invention

A novel microRNA quantification method has been applied using stem-loop RT followed by PCR analysis (Chen C, Ridzon D A, Broomer A J, Zhou Z, Lee D H, Nguyen J T, Barbisin M, Xu N L, Mahuvakar V R, Andersen M R, Lao K Q, Livak K J, Guegler K J. 2005, Nucleic Acids Res 33(20):e179; Varkonyi-Gasic E, Wu R, Wood M, Walton E F, Hellens R P. 2007, Plant Methods 3:12) (see FIG. 2). This highly accurate method allows the detection of less abundant miRNAs. In this method, stem-loop RT primers are used, which provide higher specificity and efficiency to the reverse transcription process. While the conventional method relies on polyadenylated (poly (A)) tail and thus becomes sensitive to methylation because of the susceptibility of the enzymes involved, in this novel method the reverse transcription step is transcriptspecific and insensitive to methylation. Reverse transcriptase reactions contained RNA samples including purified total RNA, 50 nM stem-loop RT primer (see Tables 12a-c, synthesized by Sigma), and using the SuperScript II reverse transcriptase (Invitrogen). A mix of up to 12 stem-loop RT primers may be used in each reaction, and the forward primers are such that the last 6 nucleotides are replaced with a GC rich sequence. For the PCR step, each miRNA has a custom forward primer, while only miRNAs exhibiting technical difficulties using the stem loop universal reverse primer (5′-GTGCAGGGTCCGAGGT-3′-SEQ ID NO: 228) get custom reverse primer as well. Note, SL-RT stands for stem loop reverse transcription, SL-F are the forward primers, SL-R are the reverse primers.

TABLE 12a

Stem Loop Reverse Transcriptase Primers for RT-PCR Validation

of Differential Mirs under Drought Stress

SEQ ID
Primer

Mir Name
Primer Name
NO:
Length

Predicted folded 24-
Pred zma 52255-SL-
804
51

nts-long seq 52255
RT

Pred zma 52255-SL-F
805
21

Predicted siRNA
Pred siRNA 55629-SL-
806
50

55629
RT

Pred siRNA 55629-SL-
807
20

F

Predicted siRNA
Pred zma 55775-SL-
808
50

55775
RT

Pred zma 55775-SL-F
809
21

Predicted siRNA
Pred zma 55869-SL-
810
50

55869
RT

Pred zma 55869-SL-F
811
21

Predicted siRNA
Pred zma 55937-SL-
812
50

55937
RT

Pred zma 55937-SL-F
813
20

Predicted siRNA
Pred zma 58170-SL-
814
50

58170
RT

Pred zma 58170-SL-F
815
19

Predicted zma mir
Pred zma 47934-SL-
816
50

47934
RT

Pred zma 47934-SL-F
817
22

Predicted zma mir
Pred zma 48043-SL-
818
50

48043
RT

Pred zma 48043-SL-F
819
21

Predicted zma mir
Pred zma mir 48193-
820
50

48193
SL-RT

Pred zma mir 48193-
821
22

SL-F

Pred zma 48193 -SL-R
822
24

Predicted zma mir
Pred zma 48408-SL-
823
50

48408
RT

Pred zma 48408-SL-F
824
21

TABLE 12b

Stem Loop Reverse Transcriptase Primers for RT-PCR Validation

of Differential Mirs under Salinity Stress

Primer

Sequence/
Primer

Mir Name
Primer Name
SEQ ID NO:
Length

Predicted siRNA
Pred zma 54895-
825
50

54895
SL-RT

Pred zma 54895-
826
22

SL-F

Predicted siRNA
Pred zma 55344-
827
50

55344
SL-RT

Pred zma 55344-
828
20

SL-F

Predicted siRNA
Pred zma 56506-
829
50

56506
SL-RT

Pred zma 56506-
830
24

SL-F

Predicted siRNA
Pred zma 59035-
831
19

59035
SL-F

Pred 59035-SL-RT
832
50

Predicted zma mir
Pred zma 47990-
833
50

47990
SL-RT

Pred zma 47990-
834
22

SL-F

Predicted zma mir
Pred zma 48459-
835
51

48459
SL-RT

Pred zma 48459-
836
18

SL-F

Predicted zma mir
Pred zma 49817-
837
51

49817
SL-RT

Pred zma 49817-
838
18

SL-F

Predicted zma mir
Pred zma 49855-
839
50

49855
SL-RT

Pred zma 49855-
840
21

SL-F

Predicted zma mir
Pred zma 49862-
841
18

49862
SL-F

Pred zma 49862-
842
51

SL-RT

Predicted zma mir
Pred zma 50145-
843
50

50145
SL-RT

Pred zma 50145-
844
20

SL-F

TABLE 12c

Stem Loop Reverse Transcriptase Primers for RT-PCR Validation

of Differential Mirs under Heat Shock Stress

Primer

Sequence/
Primer

Mir Name
Primer Name
SEQ ID NO:
Length

Predicted folded 24-nts-long
Pred zma 53851-
845
50

seq 53851
SL-RT

Pred zma 53851-
846
24

SL-F

Predicted folded 24-nts-long
Pred zma 53866-
847
51

seq 53866
SL-RT

Pred zma 53866-
848
23

SL-F

Predicted siRNA 54566
Pred zma 54566-
849
50

SL-RT

Pred zma 54566-
850
20

SL-F

Predicted siRNA 55824
Pred zma 55824-
851
50

SL-RT

Pred zma 55824-
852
20

SL-F

Predicted siRNA 58108
Pred zma 58108-
853
50

SL-RT

Pred zma 58108-
854
17

SL-F

Predicted siRNA 59817
Pred zma 59817-
855
50

SL-RT

Pred zma 59817-
856
19

SL-F

Predicted siRNA 59851
Pred zma 59851-
857
50

SL-RT

Pred zma 59851-
858
18

SL-F

Predicted siRNA 59918
Pred zma 59918-
859
50

SL-RT

Pred zma 59918-
860
20

SL-F

Predicted siRNA 59987
Pred zma 59987-
861
50

SL-RT

Pred zma 59987-
862
20

SL-F

Pred zma 59987-
863
24

SL-R

Predicted zma mir 48479
Pred zma 48479-
864
22

SL-F

Pred zma 48479-
865
50

SL-RT

Predicted zma mir 49248
Pred zma 49248-
866
50

SL-RT

Pred zma 49248-
867
19

SL-F

Predicted zma mir 49642
Pred zma 49642-
868
50

SL-RT

Pred zma 49642-
869
18

SL-F

Predicted zma mir 50256
Pred zma 50256-
870
50

SL-RT

Pred zma 50256-
871
20

SL-F

Predicted zma mir 50453
Pred zma 50453-
872
50

SL-RT

Pred zma 50453-
873
20

SL-F

Example 4
Results of RT-PCR Validation of Selected miRNAs of the Invention

An RT-PCR analysis was run on selected microRNAs of the invention, using the conventional and stem-loop RT primers as described in Tables 9-11 and 12a-c in Example 3 above. Total RNA was extracted from either leaf or root tissues of maize plants grown as described above, and was used as a template for RT-PCR analysis. Expression level and directionality of several up-regulated and down-regulated microRNAs that were found to be differential on the microarray analysis were verified. Results are summarized in Tables 13a-b below.

TABLE 13a

Summary of RT-PCR Verification Results on

Selected miRNAs using Conventional Method

Trait
miR Name
p-Value
Fold-change

Drought
Predicted folded 24-nts-
3.80E−03
1.82 (−)

long seq 52255

Predicted zma mir
1.50E−03
1.66 (+)

48043

Predicted siRNA
5.20E−03
1.51 (+)

55775

TABLE 13b

Summary of RT-PCR Verification Results on Selected

miRNAs using Stem Loop RT (Alternative) Method

Trait
miR Name
p-Value
Fold-change

Drought
Predicted folded 24-
3.30E−02
3.12 (−)

nts-long seq 52255

Predicted siRNA 55869
5.30E−02
2.00 (+)

Predicted siRNA 55629
2.70E−02
1.43 (+)

Salinity
Predicted zma mir 50145
4.20E−02
1.75 (+)

Predicted zma mir 49817
2.20E−03
3.28 (−)

Predicted zma mir 47990
5.10E−02
3.64 (−)

Predicted siRNA 54895
1.70E−04
3.98 (+)

Predicted siRNA 55344
7.40E−06
3.31 (+)

Predicted siRNA 56506
1.20E−03
2.17 (+)

Predicted zma mir 48459
1.50E−03
4.81 (−)

Heat Shock
Predicted siRNA 59987
1.20E−04
5.40 (+)

Predicted siRNA 54566
4.80E−02
1.52 (+)

Predicted siRNA 59851
7.60E−05
10.30 (−)

Predicted zma mir 50453
7.40E−05
7.24 (−)

Predicted folded 24-
6.50E−03
4.34 (−)

nts-long seq 53866

Example 5
Gene Cloning Strategies for miRNA and siRNA Molecules and Creation of Binary Vectors for Plant Expression

The best validated miRNA sequences are cloned into pORE-E1 binary vectors (FIG. 1) for the generation of transgenic plants. The full-length precursor sequence comprising the hairpin sequence of each selected miRNA, is synthesized by Genscript (USA). The resulting clone is digested with appropriate restriction enzymes and inserted into the Multi Cloning Site (MCS) of a similarly digested binary vector through ligation using T4 DNA ligase enzyme (Promega, Madison, Wis., USA).

In order to clone siRNA sequences, which have different secondary structures than those of miRNA sequences, a method of artificial microRNA (amiRNA) is implemented, where a plant miRNA precursor is modified to express a small RNA sequence that is not related to the original miRNA produced by the precursor. In this method, the mature siRNA sequence replaces the mature sequence of a specific known miRNA (e.g., miR172a and miR319a) but uses its hairpin backbone for amiRNA expression (Schwab et al., 2006, Plant Cell 18(5): 1121-1133). Moreover, the miRNA* sequences are altered such that both structural and energetic features of the miRNA precursor are retained. Examples for such artificial miRNA constructs using either miR172a (Arabidopsis mature sequence AGAAUCUUGAUGAUGCUGCAU SEQ ID NO: 453, stem loop UGCUGUGGCAUCAUCAAGAUUCACAUCUGUUGAUGGACGGUGGUGAUUC ACUCUCCACAAAGUUCUCUAUGAAAAUGAGAAUCUUGAUGAUGCUGCAU CGGC SEQ ID NO: 454) or miR319a (Arabidopsis mature sequence UUGGACUGAAGGGAGCUCCCU SEQ ID NO: 455, stem loop AGAGAGAGCUUCCUUGAGUCCAUUCACAGGUCGUGAUAUGAUUCAAUUA GCUUCCGACUCAUUCAUCCAAAUACCGAGUCGCCAAAAUUCAAACUAGAC UCGUUAAAUGAAUGAAUGAUGCGGUAGACAAAUUGGAUCAUUGAUUCUC UUUGAUUGGACUGAAGGGAGCUCCCUCU SEQ ID NO: 456), as a backbone are presented in FIGS. 3 and 4, respectively.

Example 6
Generation of Transgenic Model Plants Expressing the Abiotic Stress Associated Small RNAs

Arabidoposis thaliana transformation is performed using the floral dip procedure following a slightly modified version of the published protocol (Clough and Bent, 1998, Plant J 16(6): 735-43; and Desfeux et al., 2000, Plant Physiol 123(3): 895-904). Briefly, T0 Plants are planted in small pots filled with soil. The pots are covered with aluminum foil and a plastic dome, kept at 4° C. for 3-4 days, then uncovered and incubated in a growth chamber at 24° C. under 16 hr light: 8 hr dark cycles. A week prior to transformation all individual flowering stems are removed to allow for growth of multiple flowering stems instead. A single colony of Agrobacterium (GV3101) carrying the binary vectors (pORE-E1), harboring the miRNA hairpin sequences with additional flanking sequences both upstream and downstream of it, is cultured in LB medium supplemented with kanamycin (50 mg/L) and gentamycin (25 mg/L). Three days prior to transformation, each culture is incubated at 28° C. for 48 hrs, shaking at 180 rpm. The starter culture is split the day before transformation into two cultures, which are allowed to grow further at 28° C. for 24 hours at 180 rpm. Pellets containing the agrobacterium cells are obtained by centrifugation of the cultures at 5000 rpm for 15 minutes. The pellets are re-suspended in an infiltration medium (10 mM MgCl₂, 5% sucrose, 0.044 μM BAP (Sigma) and 0.03% Tween 20) prepared with double-distilled water.

Transformation of T0 plants is performed by inverting each plant into the agrobacterium suspension, keeping the flowering stem submerged for 5 minutes. Following inoculation, each plant is blotted dry for 5 minutes on both sides, and placed sideways on a fresh covered tray for 24 hours at 22° C. Transformed (transgenic) plants are then uncovered and transferred to a greenhouse for recovery and maturation. The transgenic T0 plants are grown in the greenhouse for 3-5 weeks until the seeds are ready, which are then harvested from plants and kept at room temperature until sowing.

Example 7
Selection of Transgenic Arabidopsis Plants Expressing the Abiotic Stress Genes According to Expression Level

Arabidopsis seeds are sown and Basta (Bayer) is sprayed for the first time on 1-2 weeks old seedlings, at least twice every few days. Only resistant plants, which are heterozygous for the transgene, survive. PCR on the genomic gene sequence is performed on the surviving seedlings using primers pORE-F2 (fwd, 5′-TTTAGCGATGAACTTCACTC-3′, SEQ ID NO: 457) and a custom designed reverse primer based on each small RNA sequence.

Example 8
Abiotic Stress Tolerance Assessments in Control and Transgenic Plants

Transgenic plants with tolerance to abiotic stress in the form of extreme deficiency in water, high salt concentrations, or heat shock are expected to exhibit better overall survival and growth compared to control non-transgenic plants. Since different plants vary considerably in their tolerance to drought, salinity and heat shock stresses, the duration of drought effected, concentration of salt applied and duration of exposure to high temperature, respectively, can be tailored to the specific plant cultivar or variety (for guidelines specifically to appropriate salt concentrations see, Bernstein and Kafkafi, Root Growth Under Salinity Stress In: Plant Roots, The Hidden Half 3rd ed. Waisel Y, Eshel A and Kafkafi U. (editors) Marcel Dekker Inc., New York, 2002).

Transgenic Arabidopsis plants are allowed to grow until seed production followed by an evaluation of their drought tolerance. Quantitative parameters of tolerance measured include, but are not limited to, the overall size and yield, average wet and dry weight, growth rate, leaf size, leaf coverage (overall leaf area), the weight of the seeds yielded, the average seed size and the number of seeds produced per plant. Under normal conditions, transgenic plants exhibit a phenotype equivalent or superior to that of the wild type plants. Following stress induction i.e., growth under stress, transformed plants not exhibiting substantial physiological and/or morphological effects, or exhibiting higher measured parameters levels compared to wild-type plants, are identified as abiotic stress tolerant plants.

Corn seeds were germinated and grown at 22° C. in soil under normal conditions for 3-4 weeks. Seedlings were then used for experimental assays of each of the following abiotic stresses: drought, salinity and heat shock. Generally, each stress assay includes an internal control group of plants that is continuously grown under optimal conditions. For drought induction, irrigation of the stress group was completely stopped for four or six days. For salinity induction, irrigation with regular water is substituted by irrigation with 300 mM NaCl solution in the stress group, for overall 2-3 irrigations in a period of four or six days. For induction of heat shock, the stress group plants are exposed to a high temperature (37° C.) for one hour. For all stress analyses, tissue samples from both experimental groups are then used for RNA analysis, as described below.

Soil-Based Drought Tolerance Assay

Screens are performed with transgenic plants over-expressing the differential small RNAs detailed above. Briefly, seeds from control Arabidopsis plants, or other transgenic plants over-expressing the small RNA molecule of the invention are germinated and transferred to pots. Drought stress is obtained after irrigation is ceased and the two plant types (transgenic and control plants) are compared when most control plants develop severe wilting, concurrently, rehydration of the plants is initiated at this point. Transgenic plants are ranked on two levels compared to controls: (1) tolerance to drought conditions, and (2) recovery (survival) following re-watering.

To illustrate and elaborate on the above drought tolerance assays of any given wild type plant compared to a corresponding transgenic plant (in which a drought-associated miRNA has been over-expressed), two different approaches are taken as follows:

Lethal drought stress—whereby wild type (used as a control) and transgenic plants (1-3 weeks old) are grown under prolonged extreme drought conditions (duration varies in accordance with plant species). Next, a recovery attempt is implemented during which plants are regularly irrigated and survival level is estimated in the two plant groups 1-2 days post irrigation initiation. While the control (wild type) plant is not expected to survive this extreme stress, the transgenic plant is expected to demonstrate some improved drought tolerance, usually within hours of re-hydration.

Non-lethal drought stress—whereby wild type (used as a control) and transgenic plants (1-3 weeks old) are grown under regular short-term cycles of drought and re-hydration steps, such that re-hydration is applied when general visible drought symptoms (e.g., evident decrease in turgor pressure of lower leaves) emerge in the experimental plants. This drought/irrigation alternating treatment continues until the flowering stage of the plants is reached, followed by an evaluation of dry matter weight. Both wild type and transgenic plants are expected to survive this non-lethal stress, however, measurable differences in drought tolerance are demonstrated by increased yield of the transgenic compared with the wild type plants.

Drought Tolerance Assay Using Sorbitol

Another assay designed to assess whether transgenic plants are more tolerant to drought or severe water deprivation, involves induction of an osmotic stress by the non-ionic osmolyte sorbitol (Mazel et al., 2004, Plant Physiol 134: 118-128). Control and transgenic plants are germinated and grown in plant-agar plates for 4 days, after which they are transferred to plates containing 500 mM sorbitol, to cause delayed growth. Following 7 days of stress treatment, control and transgenic plants are compared by measuring plant weight (wet and dry), yield, and by growth rates measured as time to flowering.

Methods for Salinity Tolerance Assessment

Osmotic stress assays, such as chloride and mannitol assays, are aimed to determine whether an osmotic stress phenotype is sodium chloride-specific or a result of a general osmotic stress. Plants which are tolerant to osmotic stress may also exhibit tolerance to drought and/or freezing. For salt and osmotic stress germination experiments, the medium is supplemented with 50, 100, or 200 mM NaCl or 100 mM, 200 mM NaCl, 400 mM mannitol.

Methods for Heat Stress Tolerance Assessment

Heat stress tolerance is achieved by exposing the plants to temperatures above 34° C. for a certain period, dependent on the plant and in accordance with the above-guidelines. Plant tolerance is examined after transferring the plants back to 22° C. for recovery and evaluation after 5 days relative to internal controls (non-transgenic plants) or plants not exposed to neither cold or heat stress.

Methods for Cold Stress Tolerance Assessment

To analyze cold stress, mature (25 day old) plants are transferred to 4° C. chambers for 1 or 2 weeks, with constitutive light. Next, plants are moved back to the greenhouse for 2 weeks to recover. Following the recovery period, chilling damages such as growth retardation are determined based on measurements of plant weight (wet and dry) and growth rates (e.g. time to flowering, plant size, yield, etc) taken on control and transgenic plants.

Example 9
Evaluating Changes in Root Architecture in Transgenic Plants

Many key traits in modern agriculture can be explained by changes in the root architecture of the plant. Root size and depth have been shown to logically correlate with drought tolerance and fertilizer use efficiency, since deeper and more branched root systems provide better coverage of the soil and can access water stored in deeper soil layers.

To test whether the transgenic plants produce a modified root structure, plants can be grown in agar plates placed vertically. A digital picture of the plates is taken every few days and the maximal length and total area covered by the plant roots are assessed. From every construct created, several independent transformation events are checked in replicates. To assess significant differences between root features, statistical test, such as a Student's t-test, is employed in order to identify enhanced root features and to provide a statistical value to the findings.

Example 10
Method for Generating Transgenic Maize Plants with Enhanced or Reduced Small RNA Regulation of Target Genes

Target prediction enables two contrasting strategies; an enhancement (positive) or a reduction (negative) of small RNA regulation. Both these strategies have been used in plants and have resulted in significant phenotype alterations. For complete in-vivo assessment of the phenotypic effects of the differential small RNAs of this invention, the inventors plan to implement both over-expression and down-regulation methods on the small RNA molecules found to associate with abiotic stress tolerance as listed in Tables 1-5. In the case of small RNAs that were up-regulated under abiotic stress conditions, an enhancement in abiotic stress tolerance can theoretically be achieved by maintaining their directionality, i.e. over-expressing them. Conversely, in the case of small RNAs that were down-regulated under abiotic stress conditions, enhancement in tolerance can be achieved by reduction of their regulation. Reduction of small RNA regulation of target genes can be accomplished in one of two approaches:

Expressing a miRNA-Resistant Target

In this method, silent mutations are introduced in the miRNA binding site of the target gene so that the DNA and resulting RNA sequences are changed to prevent miRNA binding, but the amino acid sequence of the protein is unchanged.

For design of miRNA-resistant target sequences for the small RNA molecules of the invention, optimization of the nucleic acid sequence in accordance with the preferred codon usage for a particular plant species is required. Tables such as those provided on-line at the Codon Usage Database through the NCBI (National Center for Biotechnology Information) webpage (Hypertext Transfer Protocol://World Wide Web (dot)ncbi(dot)nlm(dot)nih(dot)gov/Taxonomy/Utils/wprintgc(dot)cgi) were used. The Genbank database contains codon usage tables for a number of different species, with its Table 11 (The Bacterial, Archaeal and Plant Plastid Code) being the most relevant for plant species of this invention.

Expressing a Target-Mimic Sequence

Plant miRNAs usually lead to cleavage of their targeted gene, with this cleavage typically occurring between bases 10 and 11 of the miRNA. This position is therefore especially sensitive to mismatches between the miRNA and the target. It was found that expressing a DNA sequence that could potentially be targeted by a miRNA, but contains three extra nucleotides (ATC), and thus creating a bulge in a key position (between the two nucleotides that are predicted to hybridize with bases 10-11 of the miRNA), can inhibit the regulation of that miRNA on its native targets (Franco-Zorilla et al., 2007, Nat Genet. 39(8):1033-1037).

This type of sequence is referred to as a “target-mimic”. Inhibition of the miRNA regulation is presumed to occur through physically capturing the miRNA by the target-mimic sequence and titering-out the miRNA, thereby reducing its abundance. This method was used to reduce the amount and, consequentially, the regulation of miRNA 399 in Arabidopsis.

Tables 14-16 below present miRNA-resistant target examples and Tables 17-19 below present target mimic examples for differential (downregulated) miRNAs under drought, salinity and heat-shock stress, respectively.

TABLE 14

miRNA-Resistant Target Examples for miRNAs which

were Downregulated under Drought Stress.

Original
ORF
Mutated

Protein
Nucleotide
nucleotide
Nucleotide
NCBI Mir

Mir
Sequence/
Sequence/
seq/
Sequence/
Binding

name
SEQ ID NO:
SEQ ID NO:
SEQ ID NO:
SEQ ID NO:
Site

Predicted
874
875
876
877
1224-1245

siRNA

878
1224-1245

55937

879
1224-1245

880
1224-1245

881
1224-1245

882
1224-1245

883
1224-1245

884
1224-1245

885
1224-1245

886
1224-1245

TABLE 15a

miRNA-Resistant Target Examples for miRNAs which

were Downregulated under Salinity Stress.

Original
ORF
Mutated

Nucleotide
nucleotide
Nucleotide
NCBI Mir

Mir
Sequence/
seq/
Sequence/
Binding

name
SEQ ID NO:
SEQ ID NO:
SEQ ID NO:
Site

Predicted
887
890
893
100-120

zma mir

894
100-120

48459

895
100-120

896
100-120

897
100-120

898
100-120

899
100-120

900
100-120

901
100-120

902
100-120

Predicted
888
891
903
414-434

zma mir

904
414-434

48824

905
414-434

906
414-434

907
414-434

908
414-434

909
414-434

Predicted
889
892
910
515-535

zma mir

911
515-535

49862

912
515-535

913
515-535

TABLE 15b

miRNA-Resistant Target Examples for miRNAs which

were Upregulated under Salinity Stress

Original
ORF
Mutated

Nucleotide
nucleotide
Nucleotide
NCBI Mir

Mir
Sequence/
seq/
Sequence/
Binding

name
SEQ ID NO:
SEQ ID NO:
SEQ ID NO:
Site

Predicted
914
923
932
280-301

siRNA

933
280-301

56314

934
280-301

935
280-301

936
280-301

937
280-301

938
280-301

939
280-301

940
280-301

941
280-301

Predicted
915
924
942
176-193

siRNA

943
176-193

58212

944
176-193

945
176-193

916
925
946
970-987

947
970-987

948
970-987

949
970-987

950
970-987

951
970-987

952
970-987

917
926
953
1294-1311

954
1294-1311

955
1294-1311

956
1294-1311

957
1294-1311

958
1294-1311

959
1294-1311

960
1294-1311

961
1294-1311

962
1294-1311

918
927
963
183-200

964
183-200

965
183-200

966
183-200

967
183-200

968
183-200

969
183-200

970
183-200

971
183-200

972
183-200

919
928
973
130-147

974
130-147

975
130-147

976
130-147

977
130-147

978
130-147

979
130-147

980
130-147

981
130-147

982
130-147

Predicted
920
929
983
527-544

siRNA

984
527-544

59453

985
527-544

986
527-544

987
527-544

988
527-544

989
527-544

990
527-544

991
527-544

992
527-544

921
930
993
1165-1182

994
1165-1182

995
1165-1182

996
1165-1182

997
1165-1182

998
1165-1182

999
1165-1182

1000
1165-1182

1001
1165-1182

1002
1165-1182

922
931
1003
1135-1152

1004
1135-1152

1005
1135-1152

1006
1135-1152

1007
1135-1152

1008
1135-1152

1009
1135-1152

1010
1135-1152

1011
1135-1152

1012
1135-1152

TABLE 16a

miRNA-Resistant Target Examples for miRNAs which were Downregulated during Heat Shock.

Original
ORF
Mutated
NCBI

Mir
Homolog

Protein
Nucleotide
nucleotide
Nucleotide
Mir

Mir
sequence/
NCBI

Sequence/
Sequence/
seq/
Sequence/
Binding

name
SEQ ID NO:
Accession
Organism
SEQ ID NO:
SEQ ID NO:
SEQ ID NO:
SEQ ID NO:
Site

Predicted
59
ACR33787

Zea mays

1013
1084
1155

siRNA 57689

1226
822-839

1227
822-839

1228
822-839

1229
822-839

1230
822-839

ACF83391

Zea mays

1014
1085
1156

1231
575-592

1232
575-592

1233
575-592

1234
575-592

1235
575-592

Predicted
60
XP_002455452

Sorghum bicolor

1015
1086
1157

siRNA 58108

1236
617-634

1237
617-634

1238
617-634

1239
617-634

1240
617-634

NP_001132904

Zea mays

1016
1087
1158

1241
1540-1557

1242
1540-1557

1243
1540-1557

1244
1540-1557

1245
1540-1557

XP_002451348

Sorghum bicolor

1017
1088
1159

1246
1564-1581

1247
1564-1581

1248
1564-1581

NP_001143089

Zea mays

1018
1089
1160

1249
1528-1545

1250
1528-1545

1251
1528-1545

1252
1528-1545

1253
1528-1545

Predicted
61
ACL53547

Zea mays

1019
1090
1161

siRNA 58158

1254
1179-1199

1255
1179-1199

1256
1179-1199

1257
1179-1199

XP_002460562

Sorghum bicolor

1020
1091
1162

1258
1382-1402

1259
1382-1402

1260
1382-1402

1261
1382-1402

1262
1382-1402

ACN31936

Zea mays

1021
1092
1163

1263
1393-1413

1264
1393-1413

1265
1393-1413

1266
1393-1413

NP_001183878

Zea mays

1022
1093
1164

1267
1180-1200

1268
1180-1200

1269
1180-1200

1270
1180-1200

Predicted
64
NP_001169291

Zea mays

1023
1094
1165

siRNA 59056

1271
353-371

1272
353-371

1273
353-371

1274
353-371

XP_002437665

Sorghum bicolor

1024
1095
1166

1275
264-282

1276
264-282

1277
264-282

1278
264-282

1279
264-282

ACL52777

Zea mays

1025
1096
1167

1280
30-Dec

1281
30-Dec

1282
30-Dec

1283
30-Dec

1284
30-Dec

NP_001140626

Zea mays

1026
1097
1168

1285
328-346

1286
328-346

1287
328-346

1288
328-346

1289
328-346

NP_001143033

Zea mays

1027
1098
1169

1290
60-78

1291
60-78

1292
60-78

1293
60-78

1294
60-78

NP_001146570

Zea mays

1028
1099
1170

1295
1713-1731

1296
1713-1731

1297
1713-1731

1298
1713-1731

1299
1713-1731

Predicted
66
XP_002453411

Sorghum bicolor

1029
1100
1171

siRNA 59300

1300
2064-2083

NP_001144625

Zea mays

1030
1101
1172

1301
237-256

1302
237-256

1303
237-256

1304
237-256

1305
237-256

ADX60172

Zea mays

1031
1102
1173

1306
1838-1857

Predicted
67
XP_002464695

Sorghum bicolor

1032
1103
1174

siRNA 59379

1307
35-52

1308
35-52

1309
35-52

1310
35-52

Predicted
69
XP_002466400

Sorghum bicolor

1033
1104
1175

siRNA 59474

1311
278-296

1312
278-296

1313
278-296

1314
278-296

NP_001151137

Zea mays

1034
1105
1176

1315
597-615

1316
597-615

1317
597-615

1318
597-615

1319
597-615

ACG50012

Zea mays

1035
1106
1177

1320
41-59

1321
41-59

1322
41-59

1323
41-59

XP_002465546

Sorghum bicolor

1036
1107
1178

1324
387-405

1325
387-405

1326
387-405

1327
387-405

1328
387-405

NP_001149657

Zea mays

1037
1108
1179

1329
279-297

1330
279-297

1331
279-297

1332
279-297

Predicted
70
ACF84208

Zea mays

1038
1109
1180

siRNA 59736

1333
491-509

1334
491-509

1335
491-509

1336
491-509

1337
491-509

NP_001183626

Zea mays

1039
1110
1181

1338
225-243

1339
225-243

1340
225-243

1341
225-243

1342
225-243

Predicted
71
ACR34837

Zea mays

1040
1111
1182

siRNA 59799

1343
154-173

Predicted
72
NP_001132616

Zea mays

1041
1112
1183

siRNA 59800

1344
343-362

1345
343-362

1346
343-362

1347
343-362

1348
343-362

Predicted
75
XP_002458387

Sorghum bicolor

1042
1113
1184

siRNA 59918

1349
801-821

1350
801-821

1351
801-821

1352
801-821

1353
801 -821

Predicted zma
91
NP_001183850

Zea mays

1043
1114
1185

mir 50289

1354
1414-1432

1355
1414-1432

1356
1414-1432

1357
1414-1432

1358
1414-1432

NP_001168893

Zea mays

1044
1115
1186

1359
1395-1413

Predicted zma
94
NP_001147862

Zea mays

1045
1116
1187

mir 50480

1360
626-645

1361
626-645

1362
626-645

1363
626-645

1364
626-645

ACN27570

Zea mays

1046
1117
1188

1365
1304-1323

1366
1304-1323

1367
1304-1323

1368
1304-1323

NP_001151285

Zea mays

1047
1118
1189

1369
670-689

1370
670-689

1371
670-689

1372
670-689

1373
670-689

NP_001168251

Zea mays

1048
1119
1190

1374
458-477

1375
458-477

1376
458-477

1377
458-477

1378
458-477

ACN27595

Zea mays

1049
1120
1191

1379
858-877

1380
858-877

1381
858-877

1382
858-877

1383
858-877

NP_001159284

Zea mays

1050
1121
1192

1384
1743-1762

1385
1743-1762

1386
1743-1762

1387
1743-1762

1388
1743-1762

NP_001159342

Zea mays

1051
1122
1193

1389
1751-1770

1390
1751-1770

1391
1751-1770

1392
1751-1770

1393
1751-1770

NP_001146934

Zea mays

1052
1123
1194

1394
151-170

1395
151-170

1396
151-170

1397
151-170

XP_002449308

Sorghum bicolor

1053
1124
1195

1398
409-428

1399
409-428

1400
409-428

1401
409-428

1402
409-428

NP_001144625

Zea mays

1054
1125
1196

1403
237-256

1404
237-256

1405
237-256

1406
237-256

1407
237-256

NP_001151654

Zea mays

1055
1126
1197

1408
118-137

1409
118-137

1410
118-137

1411
118-137

1412
118-137

Predicted zma
95
NP_001140853

Zea mays

1056
1127
1198

mir 50481

1413
506-525

1414
506-525

1415
506-525

1416
506-525

1417
506-525

ACN35719

Zea mays

1057
1128
1199

1418
669-688

1419
669-688

1420
669-688

1421
669-688

1422
669-688

NP_001130351

Zea mays

1058
1129
1200

1423
1174-1193

1424
1174-1193

1425
1174-1193

1426
1174-1193

1427
1174-1193

ACF84329

Zea mays

1059
1130
1201

1428
223-242

1429
223-242

1430
223-242

1431
223-242

1432
223-242

XP_002463817

Sorghum bicolor

1060
1131
1202

1433
1298-1317

1434
1298-1317

1435
1298-1317

1436
1298-1317

XP_002465627

Sorghum bicolor

1061
1132
1203

1437
1990-2009

1438
1990-2009

1439
1990-2009

1440
1990-2009

1441
1990-2009

NP_001105211

Zea mays

1062
1133
1204

1442
911-930

1443
911-930

1444
911-930

1445
911-930

1446
911-930

NP_001158910

Zea mays

1063
1134
1205

1447
491-510

1448
491-510

1449
491-510

1450
491-510

ACF84241

Zea mays

1064
1135
1206

1451
1477-1496

1452
1477-1496

1453
1477-1496

1454
1477-1496

NP_001132755

Zea mays

1065
1136
1207

1455
591-610

1456
591-610

1457
591-610

1458
591-610

1459
591-610

NP_001144625

Zea mays

1066
1137
1208

1460
237-256

1461
237-256

1462
237-256

1463
237-256

1464
237-256

XP_002453372

Sorghum bicolor

1067
1138
1209

1465
26-45

1466
26-45

1467
26-45

1468
26-45

1469
26-45

Predicted zma
96
XP_002439337

Sorghum bicolor

1068
1139
1210

mir 50483

1470
592-611

ACF80701

Zea mays

1069
1140
1211

1471
897-916

1472
897-916

1473
897-916

1474
897-916

1475
897-916

XP_002455492

Sorghum bicolor

1070
1141
1212

1476
342-361

1477
342-361

1478
342-361

1479
342-361

1480
342-361

NP_001142046

Zea mays

1071
1142
1213

1481
360-379

1482
360-379

1483
360-379

1484
360-379

XP_002451328

Sorghum bicolor

1072
1143
1214

1485
1185-1204

1486
1185-1204

1487
1185-1204

1488
1185-1204

1489
1185-1204

NP_001142230

Zea mays

1073
1144
1215

1490
199-218

ACN26514

Zea mays

1074
1145
1216

1491
429-448

1492
429-448

1493
429-448

1494
429-448

1495
429-448

NP_001152292

Zea mays

1075
1146
1217

1496
230-249

1497
230-249

1498
230-249

1499
230-249

1500
230-249

ACF81426

Zea mays

1076
1147
1218

1501
690-709

1502
690-709

1503
690-709

1504
690-709

1505
690-709

NP_001141352

Zea mays

1077
1148
1219

1506
240-259

1507
240-259

1508
240-259

1509
240-259

1510
240-259

XP_002437204

Sorghum bicolor

1078
1149
1220

1511
447-466

1512
447-466

1513
447-466

1514
447-466

1515
447-466

NP_001141965

Zea mays

1079
1150
1221

1516
993-1012

1517
993-1012

1518
993-1012

1519
993-1012

1520
993-1012

NP_001130136

Zea mays

1080
1151
1222

1521
750-769

1522
750-769

1523
750-769

1524
750-769

1525
750-769

XP_002464517

Sorghum bicolor

1081
1152
1223

1526
345-364

1527
345-364

1528
345-364

1529
345-364

1530
345-364

NP_001147443

Zea mays

1082
1153
1224

1531
830-849

Predicted zma
98
ACG38830

Zea mays

1083
1154
1225

mir 50682

1532
561-580

1533
561-580

1534
561-580

1535
561-580

TABLE 16b

miRNA-Resistant Target Examples for miRNAs which were Upregulated during Heat Shock

Original
ORF
Mutated

Homolog

Protein
Nucleotide
nucleotide
Nucleotide
NCBI Mir

Mir

NCBI

Sequence/
Sequence/
seq/
Sequence/
Binding

name
SEQ ID NO:
Accession
Organism
SEQ ID NO:
SEQ ID NO:
SEQ ID NO:
SEQ ID NO:
Site

Predicted folded
177
NP_001169556

Zea mays

1536
1563
1590

24-nts-long

1617
1561-1584

seq 52606

1618
1561-1584

1619
1561-1584

1620
1561-1584

Predicted siRNA
181
NP_001152619

Zea mays

1537
1564
1591

54566

1621
837-858

1622
837-858

1623
837-858

1624
837-858

NP_001130342

Zea mays

1538
1565
1592

1625
212-233

1626
212-233

1627
212-233

1628
212-233

1629
212-233

Predicted siRNA
182
ACN33370

Zea mays

1539
1566
1593

54666

1630
207-228

1631
207-228

1632
207-228

1633
207-228

1634
207-228

ACR38139

Zea mays

1540
1567
1594

1635
680-701

1636
680-701

1637
680-701

NP_001141527

Zea mays

1541
1568
1595

1638
848-869

1639
848-869

1640
848-869

1641
848-869

1642
848-869

NP_001130841

Zea mays

1542
1569
1596

1643
327-348

1644
327-348

1645
327-348

1646
327-348

1647
327-348

NP_001183778

Zea mays

1543
1570
1597

1648
588-609

1649
588-609

1650
588-609

1651
588-609

1652
588-609

Predicted siRNA
183
NP_001150152

Zea mays

1544
1571
1598

55684

1653
231-252

1654
231-252

1655
231-252

1656
231-252

1657
231-252

NP_001146149

Zea mays

1545
1572
1599

1658
252-273

1659
252-273

1660
252-273

1661
252-273

1662
252-273

NP_001141527

Zea mays

1546
1573
1600

1663
846-867

1664
846-867

1665
846-867

1666
846-867

1667
846-867

Predicted siRNA
190
NP_001105185

Zea mays

1547
1574
1601

56658

1668
102-125

1669
102-125

1670
102-125

1671
102-125

1672
102-125

Predicted siRNA
192
NP_001147862

Zea mays

1548
1575
1602

56885

1673
1287-1308

1674
1287-1308

1675
1287-1308

1676
1287-1308

1677
1287-1308

XP_002467897

Sorghum bicolor

1549
1576
1603

1678
188-209

1679
188-209

1680
188-209

1681
188-209

1682
188-209

NP_001062056

Oryza sativa

1550
1577
1604

Japonica Group

1683
1145-1166

1684
1145-1166

1685
1145-1166

1686
1145-1166

1687
1145-1166

Predicted siRNA
203
NP_001131832

Zea mays

1551
1578
1605

60742

1688
542-563

1689
542-563

1690
542-563

1691
542-563

1692
542-563

Predicted siRNA
80
NP_001145763

Zea mays

1552
1579
1606

60833

1693
434-451

1694
434-451

1695
434-451

1696
434-451

1697
434-451

NP_001149387

Zea mays

1553
1580
1607

1698
673-690

1699
673-690

1700
673-690

1701
673-690

1702
673-690

Predicted zma
207
XP_002465048

Sorghum bicolor

1554
1581
1608

mir 48482

1703
380-401

1704
380-401

1705
380-401

1706
380-401

1707
380-401

Predicted zma
210
BAJ84854

Hordeum vulgare

1555
1582
1609

mir49259

subsp. vulgare

1708
456-477

1709
456-477

1710
456-477

1711
456-477

1712
456-477

Predicted zma
211
XP_002448827

Sorghum bicolor

1556
1583
1610

mir 49642

1713
129-150

ACN25803

Zea mays

1557
1584
1611

1714
1138-1159

1715
1138-1159

1716
1138-1159

1717
1138-1159

1718
1138-1159

ACO72994

Zea mays

1558
1585
1612

1719
174-195

1720
174-195

1721
174-195

1722
174-195

1723
174-195

Predicted zma
213
XP_002452943

Sorghum bicolor

1559
1586
1613

mir 50085

1724
820-840

1725
820-840

1726
820-840

1727
820-840

1728
820-840

NP_001150320

Zea mays

1560
1587
1614

1729
349-369

1730
349-369

XP_002436903

Sorghum bicolor

1561
1588
1615

1731
813-833

1732
813-833

1733
813-833

1734
813-833

1735
813-833

Predicted zma
215
ACN35534

Zea mays

1562
1589
1616

mir 50486

1736
352-373

1737
352-373

1738
352-373

1739
352-373

TABLE 17

Target Mimic Examples for miRNAs which were

Downregulated under Drought Stress.

Bulge in

Target Binding

Mir Sequence/
Sequence/

Mir Name
SEQ ID NO:
SEQ ID NO:

Predicted folded 24-nts-long seq
1
1741

52255

Predicted siRNA 55937
2
1742

Predicted siRNA 56066
18
1743

Predicted siRNA 58170
3
1744

Predicted zma mir 47934
4
1745

Predicted zma mir 48120
5
1746

Predicted zma mir 48408
6
1747

Predicted zma mir 48451
7
1748

Predicted zma mir 48462
8
1749

Predicted zma mir 48520
9
1750

Predicted zma mir 48653
26
1751

Predicted zma mir 48669
10
1752

Predicted zma mir 48682
11
1753

Predicted zma mir 48841
12
1754

Predicted zma mir 48966
13
1755

Predicted zma mir 49156
14
1756

Predicted zma mir 49199
15
1757

TABLE 18

Target Mimic Examples for miRNAs which

were Downregulated during Salt Stress.

Bulge in

Target Binding

Mir Sequence/
Sequence/

Mir Name
SEQ ID NO:
SEQ ID NO:

Predicted folded 24-nts-long seq
33
1758

54187

Predicted zma mir 47990
34
1759

Predicted zma mir 48459
35
1760

Predicted zma mir 48753
36
1761

Predicted zma mir 48824
37
1762

Predicted zma mir 48848
38
1763

Predicted zma mir 49575
39
1764

Predicted zma mir 49817
40
1765

Predicted zma mir 49855
41
1766

Predicted zma mir 49862
42
1767

TABLE 19

Target Mimic Examples for miRNAs which

were Downregulated during Heat Shock

Bulge in

Target Binding

Mir Sequence/
Sequence/

Mir Name
SEQ ID NO:
SEQ ID NO:

Predicted folded 24-nts-long seq
53
1768

52724

Predicted folded 24-nts-long seq
54
1769

53866

Predicted siRNA 54735
55
1770

Predicted siRNA 55208
56
1771

Predicted siRNA 56396
57
1772

Predicted siRNA 56791
58
1773

Predicted siRNA 57689
59
1774

Predicted siRNA 58108
60
1775

Predicted siRNA 58158
61
1776

Predicted siRNA 58720
62
1777

Predicted siRNA 58740
63
1778

Predicted siRNA 59056
64
1779

Predicted siRNA 59211
65
1780

Predicted siRNA 59300
66
1781

Predicted siRNA 59379
67
1782

Predicted siRNA 59410
68
1783

Predicted siRNA 59474
69
1784

Predicted siRNA 59736
70
1785

Predicted siRNA 59799
71
1786

Predicted siRNA 59800
72
1787

Predicted siRNA 59820
73
1788

Predicted siRNA 59851
74
1789

Predicted siRNA 59918
75
1790

Predicted siRNA 59935
76
1791

Predicted siRNA 59937
77
1792

Predicted siRNA 60421
78
1793

Predicted siRNA 60533
79
1794

Predicted siRNA 60833
80
1795

Predicted siRNA 61212
81
1796

Predicted siRNA 61236
82
1797

Predicted zma mir 48327
83
1798

Predicted zma mir 48489
84
1799

Predicted zma mir 49248
85
1800

Predicted zma mir 49310
86
1801

Predicted zma mir 49952
87
1802

Predicted zma mir 50120
88
1803

Predicted zma mir 50166
89
1804

Predicted zma mir 50256
90
1805

Predicted zma mir 50289
91
1806

Predicted zma mir 50388
92
1807

Predicted zma mir 50453
93
1808

Predicted zma mir 50480
94
1809

Predicted zma mir 50481
95
1810

Predicted zma mir 50483
96
1811

Predicted zma mir 50570
97
1812

Predicted zma mir 50682
98
1813

Predicted zma mir 50695
99
1814

Predicted zma mir 50701
100
1815

Example 11
Target Gene Identification Using Bioinformatic Tools

Homologous or orthologous genes to the genes of interest in maize and/or Arabidopsis are found through a proprietary tool that analyzes publicly available genomic as well as expression and gene annotation databases from multiple plant species. Homologous and orthologous protein and nucleotide sequences of target genes of the small RNA sequences of the invention, were found using BLAST having at least 70% identity on at least 60% of the entire master gene length, and are summarized in Table 6-8 below.

TABLE 20

Targets of small RNAs listed in Tables 1 and 2 above

Mir
Homolog
Nucleotide

Mir
Binding
NCBI
NCBI GI

Protein
Nucleotide

name
Position
Accession
number
Annotation
Identity
Organism
seq id no:
seq id no:

ath-miR164c
758-778
CAH56057
60098047
hypothetical protein [Zea mays]
1

Zea mays

1816
2015

XP_002441978
242083105
hypothetical protein SORBIDRAFT_08g006330
0.793296

Sorghum bicolor

1817
2016

[Sorghum bicolor] &gt:gi|241942671|gb|EES15816.1|

hypothetical protein SORBIDRAFT_08g006330

[Sorghum bicolor]

EAZ00836
54362548
hypothetical protein OsI_22867 [Oryza sativa Indica
0.701117

Oryza sativa

1818

Group]

Indica Group

NP_001057578
115467957
Os06g0344900 [Oryza sativa Japonica Group]
0.703911

Oryza sativa

1819
2017

&gt:gi|54291113|dbj|BAD61787.1| putative NAM

Japonica Group

[Oryza sativa Japonica Group]

&gt:gi|113595618|dbj|BAF19492.1| Os06g0344900

[Oryza sativa Japonica Group]

671-691
ADX60129
323388648
NAC transcription factor [Zea mays]
1

Zea mays

1820
2018

ACF86180
194704191
unknown [Zea mays]
1

Zea mays

1821
2019

NP_001148231
226507011
NAC domain-containing protein 21/22 [Zea mays]
0.956364

Zea mays

1822
2020

&gt:gi|195616832|gb|ACG30246.1| NAC domain-

containing protein 21/22 [Zea mays]

XP_002443999
242078460
hypothetical protein SORBIDRAFT_07g005610
0.854545

Sorghum bicolor

1823
2021

[Sorghum bicolor] &gt:gi|241940349|gb|EES13494.1|

hypothetical protein SORBIDRAFT_07g005610

[Sorghum bicolor]

409-429
NP_00116879
293334660
hypothetical protein LOC100382594 [Zea mays]
1

Zea mays

1824
2022

&gt:gi|223973065|gb|ACN30720.1| unknown [Zea mays]

XP_002463116
242050743
hypothetical protein SORBIDRAFT_02g038150
0.944532

Sorghum bicolor

1825
2023

[Sorghum bicolor] &gt:gi|241926493|gb|EER99637.1|

hypothetical protein SORBIDRAFT_02g038150

[Sorghum bicolor]

NP_001060161
115473124
Os07g0592200 [Oryza sativa Japonica Group]
0.852615

Oryza sativa

1826
2024

&gt:gi|29027762|dbj|BAC65898.1| putative CND41,

Japonica Group

chloroplast nucleoid DNA binding protein

[Oryza sativa Japonica Group]

&gt:gi|113611697|dbj|BAF22075.1| Os07g0592200

[Oryza sativa Japonica Group]

EEE67511
54398660
hypothetical protein OsJ_24961 [Oryza sativa Japonica
0.852615

Oryza sativa

1827

Group]

Japonica Group

EEC82371
54362548
hypothetical protein OsI_26705 [Oryza sativa Indica
0.85103

Oryza sativa

1828

Group]

Indica Group

BAK03251
326511103
predicted protein [Hordeum vulgare subsp. vulgare]
0.806656

Hordeum vulgare

1829
2025

subsp. vulgare

BAK02500
326501421
predicted protein [Hordeum vulgare subsp. vulgare]
0.805071

Hordeum vulgare

1830
2026

subsp. vulgare

854-874
ACG42560
195646183
CUC2 [Zea mays]
1

Zea mays

1831
2027

XP_002452517
242062455
hypothetical protein SORBIDRAFT_04g027290
0.843902

Sorghum bicolor

1832
2028

[Sorghum bicolor] &gt:gi|241932348|gb|EES05493.1|

hypothetical protein SORBIDRAFT_04g027290

[Sorghum bicolor]

953-973
ACN28126
223948084
unknown [Zea mays]
1

Zea mays

1833
2029

NP_001132469
212723361
hypothetical protein LOC100193925 [Zea mays]
0.922652

Zea mays

1834
2030

&gt:gi|194694468|gb|ACF81318.1| unknown [Zea mays]

ACG34790
195625919
hypothetical protein [Zea mays]
0.911602

Zea mays

1835
2031

XP_002455261
242052230
hypothetical protein SORBIDRAFT_03g007360
0.737569

Sorghum bicolor

1836
2032

[Sorghum bicolor] &gt:gi|241927236|gb|EES00381.1|

hypothetical protein SORBIDRAFT_03g007360

[Sorghum bicolor]

osa-miR2907a
205-226
XP_002448756
242077639
hypothetical protein SORBIDRAFT_06g032630
1

Sorghum bicolor

1837
2033

[Sorghum bicolor] &gt:gi|241939939|gb|EES13084.1|

hypothetical protein SORBIDRAFT_06g032630

[Sorghum bicolor]

NP_001143260
226499897
hypothetical protein LOC100275789 [Zea mays]
0.797468

Zea mays

1838
2034

&gt:gi|195616738|gb|ACG30199.1| hypothetical

protein [Zea mays]

NP_001143008
226500337
hypothetical protein LOC100275471 [Zea mays]
0.794304

Zea mays

1839
2035

&gt:gi|195612812|gb|ACG28236.1| hypothetical

protein [Zea mays]

797-818
XP_002458417
242058542
hypothetical protein SORBIDRAFT_03g033100
1

Sorghum bicolor

1840
2036

[Sorghum bicolor] &gt:gi|241930392|gb|EES03537.1|

hypothetical protein SORBIDRAFT_03g033100

[Sorghum bicolor]

NP_001151156
226529416
LOC100284789 [Zea mays]
0.852518

Zea mays

1841
2037

&gt:gi|195644686|gb|ACG41811.1| phosphatase

phospho1 [Zea mays]

ACG25081
195606501
phosphatase phospho1 [Zea mays]
0.848921

Zea mays

1842
2038

NP_001130133
212275705
hypothetical protein LOC100191227 [Zea mays]
0.845324

Zea mays

1843
2039

&gt:gi|194688368|gb|ACF78268.1| unknown [Zea mays]

&gt:gi|195606422|gb|ACG25041.1| phosphatase

phospho1 [Zea mays]

&gt:gi|195606828|gb|ACG25244.1| phosphatase

phospho1 [Zea mays]

BAJ95704
326507253
predicted protein [Hordeum vulgare subsp. vulgare]
0.78777

Hordeum vulgare

1844
2040

subsp. vulgare

BAJ88911
326525728
predicted protein [Hordeum vulgare subsp. vulgare]
0.784173

Hordeum vulgare

1845
2041

subsp. vulgare

EAY75640
54362548
hypothetical protein OsI_03545 [Oryza sativa Indica
0.780576

Oryza sativa

1846

Group]

Indica Group

ABI95993
115361862
acid phosphatase [Oryza sativa Japonica Group]
0.773381

Oryza sativa

1847
2042

Japonica Group

NP_001044089
115439618
Os01g0720400 [Oryza sativa Japonica Group]
0.773381

Oryza sativa

1848
2043

&gt:gi|18461219|dbj|BAB84416.1| phosphatase-like

Japonica Group

[Oryza sativa Japonica Group]

&gt:gi|113533620|dbj|BAF06003.1| Os01g0720400

[Oryza sativa Japonica Group]

Predicted
264-285
XP_002462124
242048755
hypothetical protein SORBIDRAFT_02g019550
1

Sorghum bicolor

1849
2044

siRNA 55507

[Sorghum bicolor] &gt:gi|241925501|gb|EER98645.1|

hypothetical protein SORBIDRAFT_02g019550

[Sorghum bicolor]

NP_001132708
212720661
hypothetical protein LOC100194191 [Zea mays]
0.880952

Zea mays

1850
2045

&gt:gi|194695164|gb|ACF81666.1| unknown

[Zea mays]

Predicted
399-420
AAA33496
293901

Zea mI [Zea mays]
1

Zea mays

1851
2046

siRNA 55629

2HCZ_X

Chain X, Crystal Structure Of Expb1 (Zea M 1), A
0.973822

Zea mays

1852

Beta-Expansin And Group-1 Pollen Allergen From Maize

765-786
NP_001105209
162460197
expansin-B9 precursor [Zea mays]
1

Zea mays

1853
2047

&gt:gi|115502389|sp|Q07154.2|EXPB9_MAIZE

RecName: Full = Expansin-B9; AltName: Full = Beta-

expansin-1b; AltName: Full = Pollen allergen Zea m 1;

AltName: Full = ZmEXPB9; AltName: Allergen = Zea m

1; Flags: Precursor &gt:gi|28630919|gb|AAO45607.1|

beta-expansin 9 protein [Zea mays]

P58738

RecName: Full=Expansin-B1; AltName: Full=Allergen
0.977695

Zea mays

1854

Zea m 1d; AltName: Full=Beta-expansin-1a; AltName:

Full = Pollen allergen Zea m 1; AltName:

Full = ZmEXPB1; AltName: Allergen = Zea m 1; Flags:

Precursor &gt:gi|28630923|gb|AAO45608.1| beta-

expansin 1 protein [Zea mays]

&gt:gi|224035093|gb|ACN36622.1| unknown [Zea mays]

AAK56124
14193760
beta-expansin 1 [Zea mays]
0.973978

Zea mays

1855
2048

ACF86930
194705691
unknown [Zea mays]
0.97026

Zea mays

1856
2049

ACA23876
168419913
Pas n 1 allergen precursor [Paspalum notatum]
0.836431

Paspalum notatum

1857
2050

XP_002467539
242040288
hypothetical protein SORBIDRAFT_01g029840
0.802974

Sorghum bicolor

1858
2051

[Sorghum bicolor] &gt:gi|241921393|gb|EER94537.1|

hypothetical protein SORBIDRAFT_01g029840

[Sorghum bicolor]

NP_001065305
115483269
Os10g0548600 [Oryza sativa Japonica Group]
0.732342

Oryza sativa

1859
2052

&gt:gi|75232354|sp|Q7XCG7.1|EXPB9_ORYSJ

Japonica Group

RecName: Full = Expansin-B9; AltName: Full = Beta-

expansin-9; AltName: Full = OsEXPB9; AltName:

Full = OsaEXPb1.6; Flags: Precursor

&gt:gi|8118437|gb|AAF72990.1|AF261277_1 beta-

expansin [Oryza sativa]

&gt:gi|13876539|gb|AAK43515.1|AC020666_25 beta-

expansin [Oryza sativa Japonica Group]

&gt:gi|31433387|gb|AAP54906.1| Beta-expansin 1a

precursor, putative, expressed [Oryza sativa Japonica

Group] &gt:gi|33338561|gb|AAQ13902.1| pollen

allergen [Oryza sativa]

&gt:gi|113639837|dbj|BAF27142.1| Os10g0548600

[Oryza sativa Japonica Group]

&gt:gi|125575604|gb|EAZ16888.1| hypothetical protein

OsJ_32365 [Oryza sativa Japonica Group]

&gt:gi|215704498|dbj|BAG93932.1| unnamed protein

product [Oryza sativa Japonica Group]

EAY79426
54362548
hypothetical protein OsI_34559 [Oryza sativa Indica
0.728625

Oryza sativa

1860

Group]

Indica Group

Predicted
1289-1310
XP_002445918
242082298
hypothetical protein SORBIDRAFT_07g028020
1

Sorghum bicolor

1861
2053

siRNA 55937

[Sorghum bicolor] &gt:gi|241942268|gb|EES15413.1|

hypothetical protein SORBIDRAFT_07g028020

[Sorghum bicolor]

AAY89657
68303941
beta 1,2-xylosyltransferase [Zea mays]
0.926499

Zea mays

1862
2054

NP_001105845
162464153
Beta-1,2-xylosyltransferase [Zea mays]
0.914894

Zea mays

1863
2055

&gt:gi|83715789|emb|CAJ47425.1| Beta-1,2-

xylosyltransferase [Zea mays]

CAI11448
55956967
beta-2-xylosyltransferase [Saccharum officinarum]
0.870406

Saccharum officinarum

1864
2056

CAJ47422
83715782
Beta-1,2-xylosyltransferase [Sorghum bicolor]
0.831721

Sorghum bicolor

1865
2057

NP_001062177
115477161
Os08g0503800 [Oryza sativa Japonica Group]
0.808511

Oryza sativa

1866
2058

&gt:gi|42408140|dbj|BAD09279.1| putative beta 1,2-

Japonica Group

xylosyltransferase [Oryza sativa Japonica Group]

&gt:gi|113624146|dbj|BAF24091.1| Os08g0503800

[Oryza sativa Japonica Group]

BAJ90540
326495835
predicted protein [Hordeum vulgare subsp. vulgare]
0.775629

Hordeum vulgare

1867
2059

subsp. vulgare

CAJ47421
83715780
Beta-1,2-xylosyltransferase [Hordeum vulgare]
0.783366

Hordeum vulgare

1868
2060

1225-1246
ACG29798
195615935
beta-2-xylosyltransferase [Zea mays]
1

Zea mays

1869
2061

Predicted
336-356
XP_002465700
242036610
hypothetical protein SORBIDRAFT_01g044050
1

Sorghum bicolor

1870
2062

siRNA 57283

[Sorghum bicolor] &gt:gi|241919554|gb|EER92698.1|

hypothetical protein SORBIDRAFT_01g044050

[Sorghum bicolor]

NP_001105083
162463855
serine acetyltransferase2 [Zea mays]
0.877814

Zea mays

1871
2063

&gt:gi|25991549|gb|AAN76865.1|AF453838_1 satase

isoform II [Zea mays]

EAY88901
54362548
hypothetical protein OsI_10380 [Oryza sativa Indica
0.794212

Oryza sativa

1872

Group]

Indica Group

NP_001049265
297600483
Os03g0196600 [Oryza sativa Japonica Group]
0.800643

Oryza sativa

1873
2064

&gt:gi|122224506|sp|Q10QH1.1|SAT4_ORYSJ

Japonica Group

RecName: Full = Probable serine acetyltransferase 4;

AltName: Full = OsSERAT2; 2

&gt:gi|108706662|gb|ABF94457.1| satase isoform II,

putative, expressed [Oryza sativa Japonica Group]

&gt:gi|255674283|dbj|BAF11179.2| Os03g0196600

[Oryza sativa Japonica Group]

BAJ93017
326523692
predicted protein [Hordeum vulgare subsp. vulgare]
0.784566

Hordeum vulgare

1874
2065

subsp. vulgare

NP_001049193
297600437
Os03g0185000 [Oryza sativa Japonica Group]
0.752412

Oryza sativa

1875
2066

&gt:gi|223635827|sp|Q0DUI1.2|SAT3_ORYSJ

Japonica Group

RecName: Full = Probable serine acetyltransferase 3;

AltName: Full = OsSERAT2; 1

&gt:gi|108706556|gb|ABF94351.1| satase isoform II,

putative [Oryza sativa Japonica Group]

&gt:gi|255674260|dbj|BAF11107.2| Os03g0185000

[Oryza sativa Japonica Group]

647-667
XP_002452644
242062709
hypothetical protein SORBIDRAFT_04g029800
1

Sorghum bicolor

1876
2067

[Sorghum bicolor] &gt:gi|241932475|gb|EES05620.1|

hypothetical protein SORBIDRAFT_04g029800

[Sorghum bicolor]

ACN27676
223947184
unknown [Zea mays]
0.979592

Zea mays

1877
2068

NP_001151821
226506715
px19-like protein [Zea mays]
0.97449

Zea mays

1878
2069

&gt:gi|195649987|gb|ACG44461.1| px19-like protein

[Zea mays]

BAJ98658
326498460
predicted protein [Hordeum vulgare subsp. vulgare]
0.857143

Hordeum vulgare

1879
2070

&gt:gi|326526295|dbj|BAJ97164.1| predicted protein

subsp. vulgare

[Hordeum vulgare subsp. vulgare]

NP_001047936
115448312
Os02g0717900 [Oryza sativa Japonica Group]
0.862245

Oryza sativa

1880
2071

&gt:gi|45735865|dbj|BAD12899.1| unknown protein

Japonica Group

[Oryza sativa Japonica Group]

&gt:gi|113537467|dbj|BAF09850.1| Os02g0717900

[Oryza sativa Japonica Group]

&gt:gi|125540909|gb|EAY87304.1| hypothetical protein

OsI_08707 [Oryza sativa Indica Group]

&gt:gi|215697545|dbj|BAG91539.1| unnamed protein

product [Oryza sativa Japonica Group]

EAZ24403
54398660
hypothetical protein OsJ_08158 [Oryza sativa Japonica
0.852041

Oryza sativa

1881

Group]

Japonica Group

77-97
XP_002459575
242043407
hypothetical protein SORBIDRAFT_02g006870
1

Sorghum bicolor

1882
2072

[Sorghum bicolor] &gt:gi|241922952|gb|EER96096.1|

hypothetical protein SORBIDRAFT_02g006870

[Sorghum bicolor]

CAH39852
74473394
putative protein kinase [Zea mays]
0.927063

Zea mays

1883
2073

&gt:gi|238015268|gb|ACR38669.1| unknown

[Zea mays]

CAH55606
76057830
putative protein kinase [Zea mays]
0.915547

Zea mays

1884
2074

NP_001105820
162461746
putative protein kinase [Zea mays]
0.888676

Zea mays

1885
2075

&gt:gi|74473391|emb|CAH39850.1| putative protein

kinase [Zea mays]

NP_001064960
115482733
Os10g0497600 [Oryza sativa Japonica Group]
0.882917

Oryza sativa

1886
2076

&gt:gi|78708852|gb|ABB47827.1| Protein kinase

Japonica Group

domain containing protein, expressed [Oryza sativa

Japonica Group] &gt:gi|113639569|dbj|BAF26874.1|

Os10g0497600 [Oryza sativa Japonica Group]

&gt:gi|215736900|dbj|BAG95829.1| unnamed protein

product [Oryza sativa Japonica Group]

XP_002440368
242089070
hypothetical protein SORBIDRAFT_09g030440
0.879079

Sorghum bicolor

1887
2077

[Sorghum bicolor] &gt:gi|241945653|gb|EES18798.1|

hypothetical protein SORBIDRAFT_09g030440

[Sorghum bicolor]

CAH39851
74473392
putative protein kinase [Zea mays]
0.886756

Zea mays

1888
2078

EEC67247
54362548
hypothetical protein OsI_34186 [Oryza sativa Indica
0.884837

Oryza sativa

1889

Group]

Indica Group

ACR36632
238011193
unknown [Zea mays]
0.884837

Zea mays

1890
2079

&gt:gi|238013118|gb|ACR37594.1| unknown

[Zea mays]

EEE51214
54398660
hypothetical protein OsJ_32036 [Oryza sativa Japonica
0.882917

Oryza sativa

1891

Group]

Japonica Group

Predicted
0-19
ACG30934
195618207
60S ribosomal protein L19-3 [Zea mays]
1

Zea mays

1892
2080

siRNA 58170

&gt:gi|195635187|gb|ACG37062.1| 60S ribosomal

protein L19-3 [Zea mays]

&gt:gi|223973915|gb|ACN31145.1| unknown

[Zea mays]

XP_002453326
242064073
hypothetical protein SORBIDRAFT_04g003890
0.961353

Sorghum bicolor

1893
2081

[Sorghum bicolor] &gt:gi|241933157|gb|EES06302.1|

hypothetical protein SORBIDRAFT_04g003890

[Sorghum bicolor]

XP_002458037
242057782
hypothetical protein SORBIDRAFT_03g025960
0.94686

Sorghum bicolor

1894
2082

[Sorghum bicolor] &gt:gi|241930012|gb|EES03157.1|

hypothetical protein SORBIDRAFT_03g025960

[Sorghum bicolor]

NP_001150484
226499705
60S ribosomal protein L19-3 [Zea mays]
0.942029

Zea mays

1895
2083

&gt:gi|195639566|gb|ACG39251.1| 60S ribosomal

protein L19-3 [Zea mays]

&gt:gi|238006088|gb|ACR34079.1| unknown

[Zea mays]

ACF82857
194697545
unknown [Zea mays]
0.932367

Zea mays

1896
2084

NP_001148813
226503680
60S ribosomal protein L19-3 [Zea mays]
0.922705

Zea mays

1897
2085

&gt:gi|195622310|gb|ACG32985.1| 60S ribosomal

protein L19-3 [Zea mays]

EAY90757
54362548
hypothetical protein OsI_12360 [Oryza sativa Indica
0.913043

Oryza sativa

1898

Group]

Indica Group

AAP05800
29837750
putative ribosomal protein L19 [Oryza sativa Japonica
0.903382

Oryza sativa

1899
2086

Group] &gt:gi|50399976|gb|AAT76364.1| putative

Japonica Group

ribosomal protein L19 [Oryza sativa Japonica Group]

&gt:gi|108709489|gb|ABF97284.1| 60S ribosomal

protein L19-3, putative, expressed [Oryza sativa

Japonica Group] &gt:gi|125586925|gb|EAZ27589.1|

hypothetical protein OsJ_11537 [Oryza sativa Japonica

Group]

NP_001050051
115452900
Os03g0337800 [Oryza sativa Japonica Group]
0.874396

Oryza sativa

1900
2087

&gt:gi|108708037|gb|ABF95832.1| 60S ribosomal

Japonica Group

protein L19-1, putative, expressed [Oryza sativa

Japonica Group] &gt:gi|113548522|dbj|BAF11965.1|

Os03g0337800 [Oryza sativa Japonica Group]

&gt:gi|125543790|gb|EAY89929.1| hypothetical protein

OsI_11477 [Oryza sativa Indica Group]

&gt:gi|125586185|gb|EAZ26849.1| hypothetical protein

OsJ_10765 [Oryza sativa Japonica Group]

&gt:gi|215734967|dbj|BAG95689.1| unnamed protein

product [Oryza sativa Japonica Group]

&gt:gi|215765261|dbj|BAG86958.1| unnamed protein

product [Oryza sativa Japonica Group]

NP_001136706
219362984
hypothetical protein LOC100216841 [Zea mays]
0.884058

Zea mays

1901
2088

&gt:gi|194696712|gb|ACF82440.1| unknown

[Zea mays]

98-117
EEC83614
54362548
hypothetical protein OsI_29322 [Oryza sativa Indica
1

Oryza sativa

1902

Group]

Indica Group

NP_001061858
115476523
Os08g0430700 [Oryza sativa Japonica Group]
0.994937

Oryza sativa

1903
2089

&gt:gi|38175475|dbj|BAD01172.1| putative UVB-

Japonica Group

resistance protein UVR8 [Oryza sativa Japonica Group]

&gt:gi|113623827|dbj|BAF23772.1| Os08g0430700

[Oryza sativa Japonica Group]

&gt:gi|215734996|dbj|BAG95718.1| unnamed protein

product [Oryza sativa Japonica Group]

&gt:gi|222640598|gb|EEE68730.1| hypothetical protein

OsJ_27407 [Oryza sativa Japonica Group]

NP_001141854
226495690
hypothetical protein LOC100273996 [Zea mays]
0.868354

Zea mays

1904
2090

&gt:gi|194706180|gb|ACF87174.1| unknown [Zea mays]

BAJ86407
326506177
predicted protein [Hordeum vulgare subsp. vulgare]
0.868354

Hordeum vulgare

1905
2091

subsp. vulgare

XP_002283479
225451992
PREDICTED: hypothetical protein [Vitis vinifera]
0.78481

Vitis vinifera

1906
2092

&gt:gi|296087299|emb|CBI33673.3| unnamed protein

product [Vitis vinifera]

XP_002329325
224127629
predicted protein [Populus trichocarpa]
0.777215

Populus trichocarpa

1907
2093

&gt:gi|222870779|gb|EEF07910.1| predicted protein

[Populus trichocarpa]

XP_002516745
255551397
Ran GTPase binding protein, putative [Ricinus communis]
0.767089

Ricinus communis

1908
2094

&gt:gi|223544118|gb|EEF45643.1| Ran

GTPase binding protein, putative [Ricinus communis]

ADE76711
294462323
unknown [Picea sitchensis]
0.886076

Picea sitchensis

1909
2095

XP_002873752
297811736
regulator of chromosome condensation family protein
0.764557

Arabidopsis lyrata

1910
2096

[Arabidopsis lyrata subsp. lyrata]

subsp. lyrata

&gt:gi|297319589|gb|EFH50011.1| regulator of

chromosome condensation family protein

[Arabidopsis lyrata subsp. lyrata]

82-101
NP_001169682
293336964
hypothetical protein LOC100383563 [Zea mays]
1

Zea mays

1911
2097

&gt:gi|224030677|gb|ACN34414.1| unknown [Zea mays]

&gt:gi|224030857|gb|ACN34504.1| unknown

[Zea mays]

NP_001047275
115446990
Os02g0588500 [Oryza sativa Japonica Group]
0.741036

Oryza sativa

1912
2098

&gt:gi|46806229|dbj|BAD17453.1| putative GPI-

Japonica Group

anchored protein [Oryza sativa Japonica Group]

&gt:gi|113536806|dbj|BAF09189.1| Os02g0588500

[Oryza sativa Japonica Group]

&gt:gi|125582687|gb|EAZ23618.1| hypothetical protein

OsJ_07316 [Oryza sativa Japonica Group]

190-209
XP_002452366
242062153
hypothetical protein SORBIDRAFT_04g024440
1

Sorghum bicolor

1913
2099

[Sorghum bicolor] &gt:gi|241932197|gb|EES05342.1|

hypothetical protein SORBIDRAFT_04g024440

[Sorghum bicolor]

105-124
NP_001140994
226507777
hypothetical protein LOC100273073 [Zea mays]
1

Zea mays

1914
2100

&gt:gi|194702086|gb|ACF85127.1| unknown

[Zea mays]

NP_197108
186523277
regulator of chromosome condensation repeat-
0.77892

Arabidopsis thaliana

1915
2101

containing protein [Arabidopsis thaliana]

&gt:gi|9755650|emb|CAC01803.1| UVB-resistance

protein-like [Arabidopsis thaliana]

&gt:gi|114213505|gb|ABI54335.1| At5g16040

[Arabidopsis thaliana]

&gt:gi|332004857|gb|AED92240.1| regulator of

chromosome condensation repeat-containing protein

[Arabidopsis thaliana]

Predicted
804-827
XP_002451473
242060367
hypothetical protein SORBIDRAFT_04g002490
1

Sorghum bicolor

1916
2102

siRNA 60433

[Sorghum bicolor] &gt:gi|241931304|gb|EES04449.1|

hypothetical protein SORBIDRAFT_04g002490

[Sorghum bicolor]

NP_001168856
293336630
hypothetical protein LOC100382661 [Zea mays]
0.875

Zea mays

1917
2103

&gt:gi|223973357|gb|ACN30866.1| unknown

[Zea mays]

EEC72413
54362548
hypothetical protein OsI_05713 [Oryza sativa Indica
0.810897

Oryza sativa

1918

Group] &gt:gi|222622105|gb|EEE56237.1| hypothetical

Indica Group

protein OsJ_05240 [Oryza sativa Japonica Group]

NP_001045780
115444000
Os02g0129900 [Oryza sativa Japonica Group]
0.785256

Oryza sativa

1919
2104

&gt:gi|41053058|dbj|BAD07988.1| hypothetical protein

Japonica Group

[Oryza sativa Japonica Group]

&gt:gi|113535311|dbj|BAF07694.1| Os02g0129900

[Oryza sativa Japonica Group]

BAJ92423
326516535
predicted protein [Hordeum vulgare subsp. vulgare]
0.791667

Hordeum vulgare

1920
2105

&gt:gi|326523493|dbj|BAJ92917.1| predicted protein

subsp. vulgare

[Hordeum vulgare subsp. vulgare]

Predicted
840-861
XP_002456624
242054956
hypothetical protein SORBIDRAFT_03g039630
1

Sorghum bicolor

1921
2106

zma mir

[Sorghum bicolor] &gt:gi|241928599|gb|EES01744.1|

47934

hypothetical protein SORBIDRAFT_03g039630

[Sorghum bicolor]

NP_001149037
226528422
protein phosphatase 2C [Zea mays]
0.876214

Zea mays

1922
2107

&gt:gi|195624162|gb|ACG33911.1| protein phosphatase

2C [Zea mays]

NP_001044788
115441016
Os01g0846300 [Oryza sativa Japonica Group]
0.742718

Oryza sativa

1923
2108

&gt:gi|75285811|sp|Q5N9N2.1|P2C09_ORYSJ

Japonica Group

RecName: Full = Probable protein phosphatase 2C 9;

Short = OsPP2C09 &gt:gi|56784698|dbj|BAD81824.1|

putative protein phosphatase 2C [Oryza sativa Japonica

Group] &gt:gi|113534319|dbj|BAF06702.1|

Os01g0846300 [Oryza sativa Japonica Group]

&gt:gi|218189363|gb|EEC71790.1| hypothetical protein

OsI_04415 [Oryza sativa Indica Group]

&gt:gi|222619530|gb|EEE55662.1| hypothetical protein

OsJ_04060 [Oryza sativa Japonica Group]

BAK01548
326489128
predicted protein [Hordeum vulgare subsp. vulgare]
0.73301

Hordeum vulgare

1924
2109

subsp. vulgare

Predicted
2885-2905
AAL76004
18568260
putative gag-pol polyprotein [Zea mays]
1

Zea mays

1925

zma mir
2677-2697
AAN40030
23928433
putative gag-pol polyprotein [Zea mays]
1

Zea mays

1926

48043
2926-2946
AAN40035
23928433
putative gag-pol polyprotein [Zea mays]
1

Zea mays

1927

2425-2445
AAL66760
18254408
putative gag protein [Zea mays]
1

Zea mays

1928

114-134
AAL75488
46200524
putative pol protein [Zea mays]
1

Zea mays

1929

225-245
AAD09018
4185305
polyprotein [Zea mays]
1

Zea mays

1930
2110

Predicted
102-122
NP_001169451
293335512
hypothetical protein LOC100383322 [Zea mays]
1

Zea mays

1931
2111

zma mir

&gt:gi|224029469|gb|ACN33810.1| unknown

48408

[Zea mays]

EEC68244
54362548
hypothetical protein OsI_36259 [Oryza sativa Indica
0.856471

Oryza sativa

1932

Group]

Indica Group

NP_001067969
115485650
Os11g0514800 [Oryza sativa Japonica Group]
0.851765

Oryza sativa

1933
2112

&gt:gi|77551091|gb|ABA93888.1| expressed protein

Japonica Group

[Oryza sativa Japonica Group]

&gt:gi|113645191|dbj|BAF28332.1| Os11g0514800

[Oryza sativa Japonica Group]

&gt:gi|125577286|gb|EAZ18508.1| hypothetical protein

OsJ_34037 [Oryza sativa Japonica Group]

&gt:gi|215686713|dbj|BAG88966.1| unnamed protein

product [Oryza sativa Japonica Group]

&gt:gi|215708828|dbj|BAG94097.1| unnamed protein

product [Oryza sativa Japonica Group]

35-55
XP_002463174
242050859
hypothetical protein SORBIDRAFT_02g039100
1

Sorghum bicolor

1934
2113

[Sorghum bicolor] &gt:gi|241926551|gb|EER99695.1|

hypothetical protein SORBIDRAFT_02g039100

[Sorghum bicolor]

NP_001150845
226504299
DGCR14 protein [Zea mays]
0.873727

Zea mays

1935
2114

&gt:gi|195642346|gb|ACG40641.1| DGCR14 protein

[Zea mays]

BAJ99113
326502969
predicted protein [Hordeum vulgare subsp. vulgare]
0.843177

Hordeum vulgare

1936
2115

subsp. vulgare

EAZ01087
54362548
hypothetical protein OsI_23114 [Oryza sativa Indica
0.830957

Oryza sativa

1937

Group]

Indica Group

NP_001057711
115468223
Os06g0502900 [Oryza sativa Japonica Group]
0.835031

Oryza sativa

1938
2116

&gt:gi|52076439|dbj|BAD45267.1| putative ES2 protein

Japonica Group

[Oryza sativa Japonica Group]

&gt:gi|113595751|dbj|BAF19625.1| Os06g0502900

[Oryza sativa Japonica Group]

&gt:gi|215737222|dbj|BAG96151.1| unnamed protein

product [Oryza sativa Japonica Group]

&gt:gi|215767859|dbj|BAH00088.1| unnamed protein

product [Oryza sativa Japonica Group]

EAZ37129
54398660
hypothetical protein OsJ_21470 [Oryza sativa Japonica
0.775967

Oryza sativa

1939

Group]

Japonica Group

Predicted
63-84
NP_001148466
226493425
protein phosphatase 2C [Zea mays]
1

Zea mays

1940
2117

zma mir

&gt:gi|195619560|gb|ACG31610.1| protein phosphatase

48514

2C [Zea mays]

NP_001042103
115434689
Os01g0164600 [Oryza sativa Japonica Group]
0.787234

Oryza sativa

1941
2118

&gt:gi|75164086|sp|Q942P9.1|P2C01_ORYSJ

Japonica Group

RecName: Full = Probable protein phosphatase 2C 1;

Short = OsPP2C01 &gt:gi|15528748|dbj|BAB64790.1|

putative senescence-associated protein [Oryza sativa

Japonica Group] &gt:gi|21327992|dbj|BAC00581.1|

putative senescence-associated protein [Oryza sativa

Japonica Group] &gt:gi|113531634|dbj|BAF04017.1|

Os01g0164600 [Oryza sativa Japonica Group]

&gt:gi|125569151|gb|EAZ10666.1| hypothetical protein

OsJ_00496 [Oryza sativa Japonica Group]

EAY72662
54362548
hypothetical protein OsI_00528 [Oryza sativa Indica
0.787234

Oryza sativa

1942

Group]

Indica Group

BAJ94449
326494659
predicted protein [Hordeum vulgare subsp. vulgare]
0.784195

Hordeum vulgare

1943
2119

subsp. vulgare

54-75
XP_002438740
242096499
hypothetical protein SORBIDRAFT_10g025330
1

Sorghum bicolor

1944
2120

[Sorghum bicolor] &gt:gi|241916963|gb|EER90107.1|

hypothetical protein SORBIDRAFT_10g025330

[Sorghum bicolor]

ACG29270
195614879
amino acid permease [Zea mays]
0.952479

Zea mays

1945
2121

NP_001130863
212274856
hypothetical protein LOC100191967 [Zea mays]
0.952479

Zea mays

1946
2122

&gt:gi|194690296|gb|ACF79232.1| unknown [Zea mays]

&gt:gi|194707684|gb|ACF87926.1| unknown [Zea mays]

&gt:gi|224029673|gb|ACN33912.1| unknown [Zea mays]

NP_001058189
115469179
Os06g0644700 [Oryza sativa Japonica Group]
0.867769

Oryza sativa

1947
2123

&gt:gi|51535520|dbj|BAD37439.1| amino acid

Japonica

transporter-like protein [Oryza sativa Japonica Group]

Group

&gt:gi|113596229|dbj|BAF20103.1| Os06g0644700

[Oryza sativa Japonica Group]

EAZ01859
54362548
hypothetical protein OsI_23880 [Oryza sativa Indica
0.873967

Oryza sativa

1948

Group]

Indica Group

BAJ85749
326495305
predicted protein [Hordeum vulgare subsp. vulgare]
0.845041

Hordeum vulgare

1949
2124

subsp. vulgare

BAJ95660
326507165
predicted protein [Hordeum vulgare subsp. vulgare]
0.797521

Hordeum vulgare

1950
2125

subsp. vulgare

EEE66107
54398660
hypothetical protein OsJ_22140 [Oryza sativa Japonica
0.743802

Oryza sativa

1951

Group]

Japonica Group

Predicted
1615-1636
NP_001130670
212275146
hypothetical protein LOC100191773 [Zea mays]
1

Zea mays

1952
2126

zma mir

&gt:gi|194689790|gb|ACF78979.1| unknown

48669

[Zea mays]

ACL54094
219887438
unknown [Zea mays]
0.940397

Zea mays

1953
2127

XP_002438836
242096691
hypothetical protein SORBIDRAFT_10g026920
0.763797

Sorghum bicolor

1954
2128

[Sorghum bicolor] &gt:gi|241917059|gb|EER90203.1|

hypothetical protein SORBIDRAFT_10g026920

[Sorghum bicolor]

Predicted
416-437
AAL76004
18568260
putative gag-pol polyprotein [Zea mays]
1

Zea mays

1955

zma mir
1232-1253
XP_002449124
242067694
hypothetical protein SORBIDRAFT_05g005470
1

Sorghum bicolor

1956
2129

48682

[Sorghum bicolor] &gt:gi|241934967|gb|EES08112.1|

hypothetical protein SORBIDRAFT_05g005470

[Sorghum bicolor]

ACG29168
195614675
aldehyde dehydrogenase, dimeric NADP-preferring
0.916318

Zea mays

1957
2130

[Zea mays]

NP_001168661
293331192
hypothetical protein LOC100382449 [Zea mays]
0.90795

Zea mays

1958
2131

&gt:gi|223950009|gb|ACN29088.1| unknown

[Zea mays]

NP_001148092
226509003
aldehyde dehydrogenase, dimeric NADP-preferring
0.914226

Zea mays

1959
2132

[Zea mays] &gt:gi|195615734|gb|ACG29697.1|

aldehyde dehydrogenase, dimeric NADP-preferring

[Zea mays]

ACF85700
194703231
unknown [Zea mays]
0.912134

Zea mays

1960
2133

NP_001065921
115484518
Os11g0186200 [Oryza sativa Japonica Group]
0.803347

Oryza sativa

1961
2134

&gt:gi|62954909|gb|AAY23278.1| aldehyde

Japonica Group

dehydrogenase, putative [Oryza sativa Japonica Group]

&gt:gi|108864076|gb|ABA91775.2| aldehyde

dehydrogenase family protein, expressed [Oryza sativa

Japonica Group] &gt:gi|113644625|dbj|BAF27766.1|

Os11g0186200 [Oryza sativa Japonica Group]

&gt:gi|215737694|dbj|BAG96824.1| unnamed protein

product [Oryza sativa Japonica Group]

&gt:gi|215737793|dbj|BAG96923.1| unnamed protein

product [Oryza sativa Japonica Group]

&gt:gi|218185391|gb|EEC67818.1| hypothetical protein

OsI_35395 [Oryza sativa Indica Group]

&gt:gi|222615645|gb|EEE51777.1| hypothetical protein

OsJ_33226 [Oryza sativa Japonica Group]

AAX96338
45860991
aldehyde dehydrogenase, putative [Oryza sativa
0.803347

Oryza sativa

1962
2135

Japonica Group]

Japonica Group

BAK01937
326492306
predicted protein [Hordeum vulgare subsp. vulgare]
0.763598

Hordeum vulgare

1963
2136

subsp. vulgare

Predicted
1977-1997
ADU32889
315493433
embryonic flower 1 protein [Eulaliopsis binata]
1

Eulaliopsis binata

1964
2137

zma mir

ABC69154
85062576
EMF-like [Zea mays]
0.923445

Zea mays

1965
2138

50109

NP_001105530
162461707
VEF family protein [Zea mays]
0.934609

Zea mays

1966
2139

&gt:gi|29569111|gb|AAO84022.1| VEF family protein

[Zea mays] &gt:gi|60687422|gb|AAX35735.1|

embryonic flower 2 [Zea mays]

ABB77210
82469918
EMF2 [Dendrocalamus latiflorus]
0.805423

Dendrocalamus latiflorus

1967
2140

AAX78232
62275660
embryonic flower 2 [Triticum aestivum]
0.797448

Triticum aestivum

1968
2141

NP_001062825
115478459
Os09g0306800 [Oryza sativa Japonica Group]
0.757576

Oryza sativa

1969
2142

&gt:gi|255678755|dbj|BAF24739.2| Os09g0306800

Japonica Group

[Oryza sativa Japonica Group]

BAD36510
51091694
putative VEF family protein [Oryza sativa Japonica
0.757576

Oryza sativa

1970

Group]

Japonica Group

ADU32890
315493435
embryonic flower 2 protein [Eulaliopsis binata]
0.757576

Eulaliopsis binata

1971
2143

BAJ99275
326503299
predicted protein [Hordeum vulgare subsp. vulgare]
0.76874

Hordeum vulgare

1972
2144

subsp. vulgare

BAD99131
66796110
HvEMF2b [Hordeum vulgare]
0.770335

Hordeum vulgare

1973
2145

1748-1768
NP_001105530
162461707
VEF family protein [Zea mays]
1

Zea mays

1974
2146

&gt:gi|29569111|gb|AAO84022.1| VEF family protein

[Zea mays] &gt:gi|60687422|gb|AAX35735.1|

embryonic flower 2 [Zea mays]

580-600
XP_002454482
242066385
hypothetical protein SORBIDRAFT_04g031920
1

Sorghum bicolor

1975
2147

[Sorghum bicolor] &gt:gi|241934313|gb|EES07458.1|

hypothetical protein SORBIDRAFT_04g031920

[Sorghum bicolor]

ACN30672
223972968
unknown [Zea mays]
0.942529

Zea mays

1976
2148

NP_001183461
308044322
hypothetical protein LOC100501893 [Zea mays]
0.941092

Zea mays

1977
2149

&gt:gi|238011698|gb|ACR36884.1| unknown

[Zea mays]

Q6EPQ3

RecName: Full = SPX domain-containing membrane
0.87069

Oryza sativa

1978

protein Os02g45520

Japonica Group

&gt:gi|306756291|sp|A2X8A7.2|SPXM1_ORYSI

RecName: Full = SPX domain-containing membrane

protein OsI_08463 &gt:gi|50252990|dbj|BAD29241.1|

SPX (SYG1/Pho81/XPR1) domain-containing protein-

like [Oryza sativa Japonica Group]

&gt:gi|50253121|dbj|BAD29367.1| SPX

(SYG1/Pho81/XPR1) domain-containing protein-like

[Oryza sativa Japonica Group]

BAJ95234
326502341
predicted protein [Hordeum vulgare subsp. vulgare]
0.83477

Hordeum vulgare

1979
2150

subsp. vulgare

CAD41659
38605939
OSJNBa0019K04.6 [Oryza sativa Japonica Group]
0.808908

Oryza sativa

1980

&gt:gi|25591348|gb|EAZ31698.1| hypothetical protein

Japonica Group

OsJ_15847 [Oryza sativa Japonica Group]

NP_001053611
115460021
Os04g0573000 [Oryza sativa Japonica Group]
0.808908

Oryza sativa

1981
2151

&gt:gi|306756012|sp|B8AT51.1|SPXM2_ORYSI

Japonica Group

RecName: Full = SPX domain-containing membrane

protein OsI_17046

&gt:gi|306756288|sp|Q0JAW2.2|SPXM2_ORYSJ

RecName: Full = SPX domain-containing membrane

protein Os04g0573000

&gt:gi|215694614|dbj|BAG89805.1| unnamed protein

product [Oryza sativa Japonica Group]

&gt:gi|218195403|gb|EEC77830.1| hypothetical protein

OsI_17046 [Oryza sativa Indica Group]

&gt:gi|255675707|dbj|BAF15525.2| Os04g0573000

[Oryza sativa Japonica Group]

CAH66957
116309919
OSIGBa0147H17.5 [Oryza sativa Indica Group]
0.806034

Oryza sativa

1982
2152

Indica Group

XP_002446964
242074055
hypothetical protein SORBIDRAFT_06g025950
0.784483

Sorghum bicolor

1983
2153

[Sorghum bicolor] &gt:gi|241938147|gb|EES11292.1|

hypothetical protein SORBIDRAFT_06g025950

[Sorghum bicolor]

XP_002282540
225426756
PREDICTED: hypothetical protein [Vitis vinifera]
0.721264

Vitis vinifera

1984
2154

&gt:gi|297742609|emb|CBI34758.3| unnamed protein

product [Vitis vinifera]

965-985
XP_002462548
242049607
hypothetical protein SORBIDRAFT_02g027920
1

Sorghum bicolor

1985
2155

[Sorghum bicolor] &gt:gi|241925925|gb|EER99069.1|

hypothetical protein SORBIDRAFT_02g027920

[Sorghum bicolor]

NP_001145770
226498793
hypothetical protein LOC100279277 [Zea mays]
0.881919

Zea mays

1986
2156

&gt:gi|219884365|gb|ACL52557.1| unknown

[Zea mays]

ACN34477
224030802
unknown [Zea mays]
0.852399

Zea mays

1987
2157

NP_001145176
226530255
hypothetical protein LOC100278416 [Zea mays]
0.852399

Zea mays

1988
2158

&gt:gi|195652339|gb|ACG45637.1| hypothetical

protein [Zea mays]

1075-1095
NP_001130294
212274814
hypothetical protein LOC100191388 [Zea mays]
1

Zea mays

1989
2159

&gt:gi|194688768|gb|ACF78468.1| unknown

[Zea mays]

NP_001062638
115478085
Os09g0135400 [Oryza sativa Japonica Group]
0.786982

Oryza sativa

1990
2160

&gt:gi|47848428|dbj|BAD22285.1| putative

Japonica Group

octicosapeptide/Phox/Bem1p (PB1) domain-containing

protein [Oryza sativa Japonica Group]

&gt:gi|113630871|dbj|BAF24552.1| Os09g0135400

[Oryza sativa Japonica Group]

sbi-miR164c
161-181
AAL83928
19070614
D-type cyclin [Zea mays]
1

Zea mays

1991
2161

ACL54102
219887454
unknown [Zea mays]
0.974359

Zea mays

1992
2162

XP_002444532
242079526
hypothetical protein SORBIDRAFT_07g023350
0.720513

Sorghum bicolor

1993
2163

[Sorghum bicolor] &gt:gi|241940882|gb|EES14027.1|

hypothetical protein SORBIDRAFT_07g023350

[Sorghum bicolor]

NP_001152238
226502938
cyclin delta-2 [Zea mays]
0.702564

Zea mays

1994
2164

&gt:gi|195654177|gb|ACG46556.1|

cyclin delta-2 [Zea mays]

467-487
ACN31118
223973860
unknown [Zea mays]
1

Zea mays

1995
2165

347-367
XP_002460244
242044745
hypothetical protein SORBIDRAFT_02g025260
1

Sorghum bicolor

1996
2166

[Sorghum bicolor] &gt:gi|241923621|gb|EER96765.1|

hypothetical protein SORBIDRAFT_02g025260

[Sorghum bicolor]

ACG44940
195650944
uncharacterized ACR [Zea mays]
0.904145

Zea mays

1997
2167

NP_001130182
212275603
hypothetical protein LOC100191276 [Zea mays]
0.904145

Zea mays

1998
2168

&gt:gi|194688486|gb|ACF78327.1| unknown

[Zea mays]

BAK00654
326524541
predicted protein [Hordeum vulgare subsp. vulgare]
0.740933

Hordeum vulgare

1999
2169

subsp. vulgare

BAJ99672
326512633
predicted protein [Hordeum vulgare subsp. vulgare]
0.738342

Hordeum vulgare

2000
2170

subsp. vulgare

NP_001063233
115479278
Os09g0428900 [Oryza sativa Japonica Group]
0.725389

Oryza sativa

2001
2171

&gt:gi|50726497|dbj|BAD34105.1| VirR/VirH-like

Japonica Group

protein [Oryza sativa Japonica Group]

&gt:gi|113631466|dbj|BAF25147.1| Os09g0428900

[Oryza sativa Japonica Group]

&gt:gi|215704829|dbj|BAG94857.1| unnamed protein

product [Oryza sativa Japonica Group]

EEE69749
54398660
hypothetical protein OsJ_29445
0.725389

Oryza sativa

2002

[Oryza sativa Japonica Group]

Japonica Group

EEC84614
54362548
hypothetical protein OsI_31450 [Oryza sativa Indica
0.735751

Oryza sativa

2003

Group]

Indica Group

357-377
ACN25505
223942842
unknown [Zea mays]
1

Zea mays

2004
2172

NP_001147770
226503046
NAC domain protein NAC5 [Zea mays]
0.979885

Zea mays

2005
2173

&gt:gi|195613638|gb|ACG28649.1| NAC domain

protein NAC5 [Zea mays]

XP_002452340
242062101
hypothetical protein SORBIDRAFT_04g023990
0.83046

Sorghum bicolor

2006
2174

[Sorghum bicolor] &gt:gi|241932171|gb|EES05316.1|

hypothetical protein SORBIDRAFT_04g023990

[Sorghum bicolor]

450-470
NP_001130182
212275603
hypothetical protein LOC100191276 [Zea mays]
1

Zea mays

2007
2175

&gt:gi|194688486|gb|ACF78327.1| unknown [Zea

mays]

XP_002460244
242044745
hypothetical protein SORBIDRAFT_02g025260
0.838095

Sorghum bicolor

2008
2176

[Sorghum bicolor] &gt:gi|241923621|gb|EER96765.1|

hypothetical protein SORBIDRAFT_02g025260

[Sorghum bicolor]

320-340
ACF87609
194707049
unknown [Zea mays]
1

Zea mays

2009
2177

TABLE 21

Targets of small RNAs listed in Tables 3 and 4 above

Mir
Homolog
Nucleotide

Mir
Binding
NCBI
NCBI

Protein
Nucleotide

name
Position
Accession
GI number
Annotation
Identity
Organism
seq id no:
seq id no:

Predicted
1161-1184
NP_001169815
293337028
hypothetical protein LOC100383707 [Zea mays]
1

Zea mays

2183
2356

folded

&gt:gi|224031809|gb|ACN34980.1| unknown [Zea mays]

24-nts-long

seq 54187

Predicted
448-469
XP_002456346
242054400
hypothetical protein SORBIDRAFT_03g034380
1

Sorghum

2184
2357

siRNA

[Sorghum bicolor] &gt:gi|241928321|gb|EES01466.1|

bicolor

54895

hypothetical protein SORBIDRAFT_03g034380

[Sorghum bicolor]

NP_001168171
293333303
hypothetical protein LOC100381924 [Zea mays]
0.948753

Zea mays

2185
2358

&gt:gi|223946473|gb|ACN27320.1| unknown [Zea mays]

BAK02879
326504983
predicted protein [Hordeum vulgare subsp. vulgare]
0.858726

Hordeum

2186
2359

vulgare

subsp.

vulgare

NP_001044228
115439896
Os01g0746200 [Oryza sativa Japonica Group]
0.855956

Oryza

2187
2360

&gt:gi|21902047|dbj|BAC05596.1| putative

sativa

nucleoporin Nup75 [Oryza sativa Japonica Group]

Japonica

&gt:gi|13533759|dbj|BAF06142.1|Os01g0746200

Group

[Oryza sativa Japonica Group]

EEE55373
54398660
hypothetical protein OsJ_03432 [Oryza sativa Japonica
0.822715

Oryza

2188

Group]

sativa

Japonica

Group

BAD87530
21902027
putative nucleoporin Nup75 [Oryza sativa Japonica
0.709141

Oryza

2189

Group]

sativa

Japonica

Group

EEC71467
54362548
hypothetical protein OsI_03713 [Oryza sativa Indica
0.732687

Oryza

2190

Group]

sativa

Indica

Group

Predicted
207-227
NP_001169431
293335380
hypothetical protein LOC100383302 [Zea mays]
1

Zea mays

2191
2361

siRNA

&gt:gi|224029331|gb|ACN33741.1| unknown [Zea mays]

55242

Predicted
1392-1415
XP_002468341
242041892
hypothelical protein SORBIDRAFT_01g044140
1

Sorghum

2192
2362

siRNA

[Sorghum bicolor] &gt:gi|241922195|gb|EER95339.1|

bicolor

55246

hypothetical protein SORBIDRAFT_01g044140

[Sorghum bicolor]

NP_001151876
226503834
membrane protein [Zea mays]
0.81

Zea mays

2193
2363

&gt:gi|195650527|gb|ACG44731.1| membrane protein

[Zea mays]

ACR36360
238010649
unknown [Zea mays]
0.81137

Zea mays

2194
2364

NP_001148205
226506697
membrane protein [Zea mays]
0.857881

Zea mays

2195
2365

&gt:gi|195616684|gb|ACG30172.1| membrane protein

[Zea mays]

1356-1379
ACN34728
224031304
unknown [Zea mays]
1

Zea mays

2196
2366

Predicted
18-38
XP_002463627
242032464
hypothetical protein SORBIDRAFT_01g003230
1

Sorghum

2197
2367

siRNA

[Sorghum bicolor] &gt:gi|241917481|gb|EER90625.1|

bicolor

55402

hypothetical protein SORBIDRAFT_01g003230

[Sorghum bicolor]

NP_001151779
226493505
CRAL/TRIO domain containing protein [Zea mays]
0.93038

Zea mays

2198
2368

&gt:gi|95649633|gb|ACG44284.1| CRAL/TRIO

domain containing protein [Zea mays]

&gt:gi|223945249|gb|ACN26708.1| unknown [Zea mays]

&gt:gi|224028997|gb|ACN33574.1| unknown

[Zea mays]

NP_001151588
226492275
CRAL/TRIO domain containing protein [Zea mays]
0.92827

Zea mays

2199
2369

&gt:gi|195647970|gb|ACG43453.1| CRAL/TRIO

domain containing protein [Zea mays]

ACN25417
223942666
unknown [Zea mays]
0.93038

Zea mays

2200
2370

&gt:gi|223946125|gb|ACN27146.1| unknown [Zea mays]

NP_001051723
115456244
Os03g0820900 [Oryza sativa Japonica Group]
0.78481

Oryza

2201
2371

&gt:gi|29124131|gb|AAO65872.1| unknown protein

sativa

[Oryza sativa Japonica Group]

Japonica

&gt:gi|108711795|gb|ABF99590.1| CRAL/TRIO

Group

domain containing protein, expressed

[Oryza sativa Japonica Group]

&gt:gi|108711796|gb|ABF99591.1|

CRAL/TRIO domain containing protein, expressed

[Oryza sativa Japonica Group]

&gt:gi|113550194|dbj|BAF13637.1| Os03g0820900

[Oryza sativa Japonica Group]

&gt:gi|215704136|dbj|BAG92976.1| unnamed protein

product [Oryza sativa Japonica Group]

BAK03907
326519964
predicted protein [Hordeum vulgare subsp. vulgare]
0.759494

Hordeum

2202
2372

vulgare

subsp.

vulgare

Predicted
2164-2185
XP_002453411
242064243
hypothetical protein SORBIDRAFT_04g005580
1

Sorghum

2203
2373

siRNA

[Sorghum bicolor] &gt:gi|241933242|gb|EES06387.1|

bicolor

56314

hypothetical protein SORBIDRAFT_04g005580

[Sorghum bicolor]

NP_001104863
162460461
response regulator 9 [Zea mays]
0.939778

Zea mays

2204
2374

&gt:gi|14189890|dbj|BAB55874.1| response regulator

9 [Zea mays]

ADX60157
323388704
ARR-B transcription factor [Zea mays]
0.939778

Zea mays

2205
2375

NP_001046097
115444634
Os02g0182100 [Oryza sativa Japonica Group]
0.743265

Oryza

2206
2376

&gt:gi|49388028|dbj|BAD25144.1| putative response

sativa

regulator 9 [Oryza sativa Japonica Group]

Japonica

&gt:gi|113535628|dbj|BAF08011.1| Os02g0182100

Group

[Oryza sativa Japonica Group]

&gt:gi|118790764|tpd|FAA00257.1| TPA: response

regulator [Oryza sativa Japonica Group]

&gt:gi|215713506|dbj|BAG94643.1| unnamed protein

product [Oryza sativa Japonica Group]

&gt:gi|222622313|gb|EEE56445.1| hypothetical protein

OsJ_05635 [Oryza sativa Japonica Group]

EAY84742
54362548
hypothetical protein OsI_06112 [Oryza sativa Indica
0.740095

Oryza

2207

Group]

sativa

Indica

Group

BAJ94963
326500593
predicted protein [Hordeum vulgare subsp. vulgare]
0.719493

Hordeum

2208
2377

vulgare

subsp.

vulgare

366-387
XP_002463544
242032298
hypothetical protein SORBIDRAFT_01g001720
1

Sorghum

2209
2378

[Sorghum bicolor] &gt:gi|241917398|gb|EER90542.1|

bicolor

hypothetical protein SORBIDRAFT_01g001720

[Sorghum bicolor]

NP_001146073
226508205
hypothetical protein LOC100279605 [Zea mays]
0.916342

Zea mays

2210
2379

&gt:gi|219885573|gb|ACL53161.1| unknown [Zea mays]

AAX96076
45430072
diphthamide biosynthesis protein 2 [Oryza sativa
0.774319

Oryza

2211

Japonica Group] &gt:gi|77549704|gb|ABA92501.1|

sativa

diphthamide biosynthesis protein 2 containing protein,

Japonica

expressed [Oryza sativa Japonica Group]

Group

&gt:gi|125576808|gb|EAZ18030.1| hypothetical

protein OsJ_33577 [Oryza sativa Japonica Group]

NP_001067661
297611609
Os11g0265600 [Oryza sativa Japonica Group]
0.762646

Oryza

2212
2380

&gt:gi|255679981|dbj|BAF28024.2| Os11g0265600

sativa

[Oryza sativa Japonica Group]

Japonica

Group

BAJ96431
326516877
predicted protein [Hordeum vulgare subsp. vulgare]
0.743191

Hordeum

2213
2381

vulgare

subsp.

vulgare

Predicted
836-853
NP_001044108
115439656
Os01g0723600 [Oryza sativa Japonica Group]
1

Oryza

2214
2382

siRNA

&gt:gi|68571765|sp|Q8S2E5.1|KPRS3_ORYSJ

sativa

58212

RecName: Full = Ribose-phosphate pyrophosphokinase

Japonica

3, chloroplastic; AltName: Full = Phosphoribosyl

Group

pyrophosphate synthase 3; Flags: Precursor

&gt:gi|20160549|dbj|BAB89498.1| putative

phosphoribosyl pyrophosphate synthase [Oryza sativa

Japonica Group] &gt:gi|113533639|dbj|BAF06022.1|

Os01g0723600 [Oryza sativa Japonica Group]

&gt:gi|215766650|dbj|BAG98878.1| unnamed protein

product [Oryza sativa Japonica Group]

EAY75668
54362548
hypothetical protein OsI_03574 [Oryza sativa Indica
0.9511

Oryza

2215

Group]

sativa Indica

Group

XP_002456270
242054248
hypothetical protein SORBIDRAFT_03g033270
0.843521

Sorghum

2216
2383

[Sorghum bicolor] &gt:gi|241928245|gb|EES01390.1|

bicolor

hypothetical protein SORBIDRAFT_03g033270

[Sorghum bicolor]

EAZ13389
54398660
hypothetical protein OsJ_03307 [Oryza sativa Japonica
0.784841

Oryza

2217

Group]

sativa

Japonica

Group

BAJ93948
326488558
predicted protein [Hordeum vulgare subsp. vulgare]
0.770171

Hordeum

2218
2384

vulgare

subsp.

vulgare

NP_001144250
226496474
hypothetical protein LOC100277120 [Zea mays]
0.721271

Zea mays

2219
2385

&gt:gi|95639012|gb|ACG38974.1| hypothetical

protein [Zea mays]

174-191
XP_002439476
242087286
hypothetical protein SORBIDRAFT_09g007410
1

Sorghum

2220
2386

[Sorghum bicolor] &gt:gi|241944761|gb|EES17906.1|

bicolor

hypothetical protein SORBIDRAFT_09g007410

[Sorghum bicolor]

NP_001130714
212274518
hypothetical protein LOC100191818 [Zea mays]
0.974522

Zea mays

2221
2387

&gt:gi|195621524|gb|ACG32592.1| ubiquitin-

conjugating enzyme E2 16 [Zea mays]

&gt:gi|195638874|gb|ACG38905.1| ubiquitin-

conjugating enzyme E2 16 [Zea mays]

&gt:gi|224035185|gb|ACN36668.1| unknown [Zea mays]

ACF79042
194689915
unknown [Zea mays]
0.968153

Zea mays

2222
2388

&gt:gi|224033341|gb|ACN35746.1| unknown [Zea mays]

NP_001047515
115447470
Os02g0634800 [Oryza sativa Japonica Group]
0.961783

Oryza

2223
2389

&gt:gi|49387540|dbj|BAD25096.1| putative ubiquitin-

sativa

conjugating enzyme E2 [Oryza sativa Japonica Group]

Japonica

&gt:gi|49388188|dbj|BAD25314.1| putative ubiquitin-

Group

conjugating enzyme E2 [Oryza sativa Japonica Group]

&gt:gi|113537046|dbj|BAF09429.1| Os02g0634800

[Oryza sativa Japonica Group]

&gt:gi|215765381|dbj|BAG87078.1| unnamed protein

product [Oryza sativa Japonica Group]

NP_001150370
226529098
ubiquitin-conjugating enzyme E2 16 [Zea mays]
0.961783

Zea mays

2224
2390

&gt:gi|195638722|gb|ACG38829.1| ubiquitin-

conjugating enzyme E2 16 [Zea mays]

&gt:gi|223944475|gb|ACN26321.1| unknown [Zea

mays]

XP_002284068
225429994
PREDICTED: hypothetical protein isoform 2 [Vitis vinifera]
0.942675

Vitis

2225
2391

&gt:gi|225429997|ref|XP_002284062.1|

vinifera

PREDICTED: hypothetical protein isoform 1 [Vitis vinifera]

&gt:gi|296081873|emb|CBI20878.3| unnamed

protein product [Vitis vinifera]

ADV04064
317159578
protein binding/ubiquitin-protein ligase 4 [Hevea brasiliensis]
0.923567

Hevea

2226
2392

brasiliensis

ACA24139
168472726
ubiquitin-conjugating enzyme [Lolium temulentum]
0.936306

Lolium

2227
2393

temulentum

XP_002872181
297808594
predicted protein [Arabidopsis lyrata subsp. lyrata]
0.929936

Arabidopsis

2228
2394

&gt:gi|297836036|ref|XP_002885900.1| hypothetical

lyrata

protein ARALYDRAFT_899617 [Arabidopsis lyrata

subsp.

subsp. lyrata] &gt:gi|297318018|gb|EFH48440.1|

lyrata

predicted protein [Arabidopsis lyrata subsp. lyrata]

&gt:gi|297331740|gb|EFH62159.1| hypothetical

protein ARALYDRAFT_899617 [Arabidopsis lyrata

subsp. lyrata]

NP_568476
145358439
putative ubiquitin-conjugating enzyme E2 21
0.929936

Arabidopsis

2229
2395

[Arabidopsis thaliana]

thaliana

&gt:gi|79328676|ref|NP_001031939.1| putative

ubiquitin-conjugating enzyme E2 21 [Arabidopsis thaliana]

&gt:gi|75330089|sp|Q8LGF7.1|PEX4_ARATH

RecName: Full = Protein PEROXIN-4; Short = AtPEX4;

AltName: Full = Probable ubiquitin-conjugating enzyme

E2 21; AltName: Full = Ubiquitin carrier protein 21

&gt:gi|21536556|gb|AAM60888.1| E2, ubiquitin-

conjugating enzyme, putative [Arabidopsis thaliana]

&gt:gi|66354452|gb|AAY44861.1| ubiquitinating

enzyme [Arabidopsis thaliana]

&gt:gi|98961101|gb|ABF59034.1| At5g25760

[Arabidopsis thaliana]

&gt:gi|332006099|gb|AED93482.1| putative ubiquitin-

conjugating enzyme E2 21 [Arabidopsis thaliana]

&gt:gi|332006100|gb|AED93483.1| putative ubiquitin-

conjugating enzyme E2 21 [Arabidopsis thaliana]

53-70
XP_002443820
242078102
hypothetical protein SORBIDRAFT_07g002770
1

Sorghum

2230
2396

[Sorghum bicolor]

bicolor

&gt:gi|18481702|gb|AAL73524.1|AF466200_3

tryptophan synthase beta-subunit [Sorghum bicolor]

&gt:gi|241940170|gb|EES13315.1| hypothetical protein

SORBIDRAFT_07g002770 [Sorghum bicolor]

P43284

RecName: Full = Tryptophan synthase beta chain 2,
0.834034

Zea mays

2231

chloroplastic; AltName: Full = Orange pericarp 2; Flags:

Precursor &gt:gi|168574|gb|AAA33491.1| tryptophan

synthase beta-subunit [Zea mays]

EAZ05512
54362548
hypothetical protein OsI_27728 [Oryza sativa Indica
0.848739

Oryza

2232

Group]

sativa

Indica

Group

P43283

RecName: Full = Tryptophan synthase beta chain 1;
0.802521

Zea mays

2233

AltName: Full = Orange pericarp 1

&gt:gi|168572|gb|AAA33490.1| tryptophan synthase

beta-subunit [Zea mays]

ADZ04637
325260807
hypothetical protein [Oryza glaberrima]
0.848739

Oryza

2234
2397

glaberrima

XP_002281484
225461049
PREDICTED: hypothetical protein [Vitis vinifera]
0.752101

Vitis

2235
2398

vinifera

CBI23954
270256979
unnamed protein product [Vitis vinifera]
0.752101

Vitis

2236
2399

vinifera

NP_200292
145359253
tryptophan synthase beta chain [Arabidopsis thaliana]
0.754202

Arabidopsis

2237
2400

&gt:gi|136251|sp|P14671.1|TRPB1_ARATH

thaliana

RecName: Full = Tryptophan synthase beta chain 1,

chloroplastic; Flags: Precursor

&gt:gi|14194117|gb|AAK56253.1|AF367264_1

AT5g54810/MBG8_7 [Arabidopsis thaliana]

&gt:gi|166892|gb|AAA32878.1| tryptophan synthase

beta subunit [Arabidopsis thaliana]

&gt:gi|9758261|dbj|BAB08760.1| tryptophan synthase

beta chain 1 precursor [Arabidopsis thaliana]

&gt:gi|21592983|gb|AAM64932.1| tryptophan synthase

beta chain 1 precursor [Arabidopsis thaliana]

&gt:gi|22137210|gb|AAM91450.1|

AT5g54810/MBG8_7 [Arabidopsis thaliana]

&gt:gi|110742593|dbj|BAE99210.1| tryptophan

synthase beta chain 1 precursor [Arabidopsis thaliana]

&gt:gi|332009160|gb|AED96543.1| tryptophan

synthase beta chain [Arabidopsis thaliana]

BAD83779
57157620
tryptophan synthase beta subunit [Polygonum tinctorium]
0.747899

Polygonum

2238
2401

tinctorium

1275-1292
ACF84664
194701159
unknown [Zea mays]
1

Zea mays

2239
2402

NP_001132166
239049858
hypothetical protein LOC100193588 [Zea mays]
0.961303

Zea mays

2240
2403

&gt:gi|238908670|gb|ACF80898.2| unknown [Zea mays]

XP_002463588
242032386
hypothetical protein SORBIDRAFT_01g002540
0.847251

Sorghum

2241
2404

[Sorghum bicolor] &gt:gi|241917442|gb|EER90586.1|

bicolor

hypothetical protein SORBIDRAFT_01g002540

[Sorghum bicolor]

NP_001142611
226501615
hypothetical protein LOC100274879 [Zea mays]
0.796334

Zea mays

2242
2405

&gt:gi|195607300|gb|ACG25480.1| hypothetical

protein [Zea mays]

193-210
ADX60181
323388752
NLP transcription factor [Zea mays]
1

Zea mays

2243
2406

NP_001151037
226532035
RWP-RK domain containing protein [Zea mays]
0.996979

Zea mays

2244
2407

&gt:gi|195643826|gb|ACG41381.1| RWP-RK domain

containing protein [Zea mays]

ACF82353
194696537
unknown [Zea mays]
0.996979

Zea mays

2245
2408

XP_002448339
242076805
hypothetical protein SORBIDRAFT_06g025420
0.912387

Sorghum

2246
2409

[Sorghum bicolor] &gt:gi|241939522|gb|EES12667.1|

bicolor

hypothetical protein SORBIDRAFT_06g025420

[Sorghum bicolor]

191-208
XP_002442705
242084559
hypothetical protein SORBIDRAFT_08g001540
1

Sorghum

2247
2410

[Sorghum bicolor] &gt:gi|241943398|gb|EES16543.1|

bicolor

hypothetical protein SORBIDRAFT_08g001540

[Sorghum bicolor]

ACN27961
223947754
unknown [Zea mays]
0.954268

Zea mays

2248
2411

&gt:gi|223950179|gb|ACN29173.1| unknown [Zea mays]

&gt:gi|224030475|gb|ACN34313.1| unknown

[Zea mays]

ACN33779
224029406
unknown [Zea mays]
0.882622

Zea mays

2249
2412

NP_001148977
226508337
LOC100282597 [Zea mays]
0.881098

Zea mays

2250
2413

&gt:gi|195623744|gb|ACG33702.1| alpha-N-

arabinofuranosidase A precursor [Zea mays]

EEC67598
54362548
hypothetical protein OsI_34967 [Oryza sativa Indica
0.890244

Oryza

2251

Group]

sativa

Indica

Group

NP_001065660
115483996
Os11g0131900 [Oryza sativa Japonica Group]
0.890244

Oryza

2252
2414

&gt:gi|108863956|gb|ABA91355.2| Alpha-L-

sativa

arabinofuranosidase C-terminus family protein,

Japonica

expressed [Oryza sativa Japonica Group]

Group

&gt:gi|108863957|gb|ABG22345.1| Alpha-L-

arabinofuranosidase C-terminus family protein,

expressed [Oryza sativa Japonica Group]

&gt:gi|108863958|gb|ABG22346.1| Alpha-L-

arabinofuranosidase C-terminus family protein,

expressed [Oryza sativa Japonica Group]

&gt:gi|13644364|dbj|BAF27505.1| Os11g0131900

[Oryza sativa Japonica Group]

&gt:gi|215694468|dbj|BAG89431.1| unnamed protein

product [Oryza sativa Japonica Group]

&gt:gi|222615454|gb|EEE51586.1| hypothetical protein

OsJ_32826 [Oryza sativa Japonica Group]

AAK21880
13398413
arabinoxylan arabinofuranohydrolase isoenzyme
0.873476

Hordeum

2253
2415

AXAH-II [Hordeum vulgare]

vulgare

NP_001066062
115487149
Os12g0128700 [Oryza sativa Japonica Group]
0.875

Oryza

2254
2416

&gt:gi|77553575|gb|ABA96371.1| Alpha-L-

sativa

arabinofuranosidase C-terminus family protein,

Japonica

expressed [Oryza sativa Japonica Group]

Group

&gt:gi|108862132|gb|ABA96370.2| Alpha-L

arabinofuranosidase C-terminus family protein,

expressed [Oryza sativa Japonica Group]

&gt:gi|113648569|dbj|BAF29081.1| Os12g0128700

[Oryza sativa Japonica Group]

EEC68793
54362548
hypothetical protein OsI_37345 [Oryza sativa Indica
0.875

Oryza

2255

Group]

sativa

Indica

Group

EEE52698
54398660
hypothetical protein OsJ_35098 [Oryza sativa Japonica
0.855183

Oryza

2256

Group]

sativa

Japonica

Group

39-56
XP_002460589
242045435
hypothetical protein SORBIDRAFT_02g031360
1

Sorghum

2257
2417

[Sorghum bicolor]

bicolor

&gt:gi|241923966|gb|EER97110.1|

hypothetical protein SORBIDRAFT_02g031360

[Sorghum bicolor]

NP_001170202
293335825
hypothetical protein LOC100384152 [Zea mays]
0.932534

Zea mays

2258
2418

&gt:gi|74011495|ref|XP_548544.2| PREDICTED:

similar to solute carrier family 15, member 4 [Canis

familiaris] &gt:gi|224034265|gb|ACN36208.1|

unknown [Zea mays]

1336-1353
XP_002448678
242077483
hypothetical protein SORBIDRAFT_06g031350
1

Sorghum

2259
2419

[Sorghum bicolor] &gt:gi|241939861|gb|EES13006.1|

bicolor

hypothetical protein SORBIDRAFT_06g031350

[Sorghum bicolor]

ACV84254
258618872
LOX6 [Sorghum bicolor]
0.986711

Sorghum

2260
2420

bicolor

NP_001105976
162463393
lipoxygenase6 [Zea mays]
0.864895

Zea
mays

2261
2421

&gt:gi|84626289|gb|ABC59689.1| lipoxygenase [Zea

mays] &gt:gi|223949113|gb|ACN28640.1| unknown

[Zea mays] &gt:gi|224030589|gb|ACN34370.1|

unknown [Zea mays]

&gt:gi|238009650|gb|ACR35860.1| unknown [Zea mays]

ACL5319
219885648
unknown [Zea mays]
0.844961

Zea
mays

2262
2422

&gt:gi|224030301|gb|ACN34226.1| unknown [Zea mays]

&gt:gi|224030481|gb|ACN34316.1| unknown

[Zea mays]

165-182
NP_001145144
226499907
hypothetical protein LOC100278375 [Zea mays]
1

Zea
mays

2263
2423

&gt:gi|195651893|gb|ACG45414.1| hypothetical

protein [Zea mays]

XP_002444131
242078724
hypothetical protein SORBIDRAFT_07g009350
0.875

Sorghum

2264
2424

[Sorghum bicolor] &gt:gi|241940481|gb|EES13626.1|

bicolor

hypothetical protein SORBIDRAFT_07g009350

[Sorghum bicolor]

560-577
NP_001169179
293336717
hypothetical protein LOC100383029 [Zea mays]
1

Zea mays

2265
2425

&gt:gi|223975337|gb|ACN31856.1| unknown [Zea mays]

XP_002463802
242032814
hypothetical protein SORBIDRAFT_01g006430
0.816964

Sorghum

2266
2426

[Sorghum bicolor] &gt:gi|241917656|gb|EER90800.1|

bicolor

hypothetical protein SORBIDRAFT_01g006430

[Sorghum bicolor]

1379-1396
XP_002458253
242058214
hypothetical protein SORBIDRAFT_03g029970
1

Sorghum

2267
2427

[Sorghum bicolor] &gt:gi|241930228|gb|EES03373.1|

bicolor

hypothetical protein SORBIDRAFT_03g029970

[Sorghum bicolor]

NP_001105776
162457954
inorganic phosphate transporter 6 [Zea mays]
0.927798

Zea mays

2268
2428

&gt:gi|60677369|emb|CAH25731.1| phosphate

transporter [Zea mays]

&gt:gi|65335927|gb|AAY42390.1| inorganic phosphate

transporter 6 [Zea mays]

&gt:gi|221047212|gb|ACL98053.1| inorganic

phosphate transporter 6 [Zea mays]

NP_001043759
115438958
Os01g0657100 [Oryza sativa Japonica Group]
0.799639

Oryza

2269
2429

&gt:gi|75306389|sp|Q94DB8.1|PT111_ORYSJ

sativa

RecName: Full = Inorganic phosphate transporter 1-11;

Japonica

Short = OsPT11; Short = OsPht1; 11; AltName:

Group

Full = H(+)/Pi cotransporter

&gt:gi|5290037|dbj|BAB63731.1| putative phosphate

transport protein PT1 [Oryza sativa Japonica Group]

&gt:gi|23600435|gb|AAN39041.1| high affinity

phosphate transporter 11 [Oryza sativa Japonica Group]

&gt:gi|23600477|gb|AAN39052.1| putative

phosphate transporter OsPT11 [Oryza sativa Japonica

Group] &gt:gi|113533290|dbj|BAF05673.1|

Os01g0657100 [Oryza sativa Japonica Group]

&gt:gi|125527126|gb|EAY75240.1| hypothetical

protein OsI_03128 [Oryza sativa Indica Group]

&gt:gi|125571445|gb|EAZ12960.1| hypothetical

protein OsJ_02880 [Oryza sativa Japonica Group]

AAM14592
20162452
phosphate transporter [Oryza sativa Indica Group]
0.799639

Oryza

2270
2430

sativa

Indica

Group

38-55
ACL54346
219887942
unknown [Zea mays]
1

Zea mays

2271
2431

NP_001144869
226528390
hypothetical protein LOC100277964 [Zea mays]
1

Zea mays

2272
2432

&gt:gi|195648236|gb|ACG43586.1| hypothetical

protein [Zea mays]

XP_002464507
242034224
hypothetical protein SORBIDRAFT_01g019820
0.820738

Sorghum

2273
2433

[Sorghum bicolor] &gt:gi|241918361|gb|EER91505.1|

bicolor

hypothetical protein SORBIDRAFT_01g019820

[Sorghum bicolor]

241-258
XP_002446139
242072405
hypothetical protein SORBIDRAFT_06g002240
1

Sorghum

2274
2434

[Sorghum bicolor] &gt:gi|241937322|gb|EES10467.1|

bicolor

hypothetical protein SORBIDRAFT_06g002240

[Sorghum bicolor]

ACN34366
224030580
unknown [Zea mays]
0.936508

Zea mays

2275
2435

NP_001147785
226500959
amino acid permease [Zea mays]
0.924162

Zea mays

2276
2436

&gt:gi|195613758|gb|ACG28709.1| amino acid

permease [Zea mays]

XP_002453115
242063651
hypothetical protein SORBIDRAFT_04g000290
0.742504

Sorghum

2277
2437

[Sorghum bicolor] &gt:gi|241932946|gb|EES06091.1|

bicolor

hypothetical protein SORBIDRAFT_04g000290

[Sorghum bicolor]

XP_002438439
242095897
hypothetical protein SORBIDRAFT_10g019640
0.724868

Sorghum

2278
2438

[Sorghum bicolor] &gt:gi|241916662|gb|EER89806.1|

bicolor

hypothetical protein SORBIDRAFT_10g019640

[Sorghum bicolor]

NP_001045585
115443610
Os02g0101000 [Oryza sativa Japonica Group]
0.705467

Oryza

2279
2439

&gt:gi|41053220|dbj|BAD08181.1| putative amino acid

sativa

transport protein [Oryza sativa Japonica Group]

Japonica

Group

&gt:gi|113535116|dbj|BAF07499.1| Os02g0101000

[Oryza sativa Japonica Group]

&gt:gi|215704334|dbj|BAG93768.1| unnamed protein

product [Oryza sativa Japonica Group]

&gt:gi|218189857|gb|EEC72284.1| hypothetical

protein OsI_05452 [Oryza sativa Indica Group]

&gt:gi|222621988|gb|EEE56120.1| hypothetical protein

OsJ_04987 [Oryza sativa Japonica Group]

NP_001136459
219362430
hypothetical protein LOC100216569 [Zea mays]
0.717813

Zea mays

2280
2440

&gt:gi|94695786|gb|ACF81977.1| unknown

[Zea mays]

110-127
ACG28457
195613253
chlorophyll a-b binding protein 8 [Zea mays]
1

Zea mays

2281
2441

&gt:gi|238013956|gb|ACR38013.1| unknown

[Zea mays]

ABJ99590
116519120
type III chlorophyll a/b-binding protein [Lycoris aurea]
0.861423

Lycoris

2282
2442

aurea

ABJ99591
116519124
type III chlorophyll a/b-binding protein [Lycoris aurea]
0.853933

Lycoris

2283
2443

aurea

1609235A

chlorophyll a/b binding protein
0.835206

Solanum

2284

lycopersicum

P27522

RecName: Full = Chlorophyll a-b binding protein 8,
0.835206

Solanum

2285

chloroplastic; AltName: Full = LHCI type III CAB-8;

lycopersicum

Flags: Precursor &gt:gi|19182|emb|CAA33330.1| Type

III chlorophyll a/b-binding protein [Solanum lycopersicum]

XP_002273201
225436256
PREDICTED: hypothetical protein [Vitis vinifera]
0.816479

Vitis

2286
2444

vinifera

BAD25284
49388136
putative chlorophyll a/b-binding protein type III
0.827715

Oryza

2287
2445

precursor [Oryza sativa Japonica Group]

sativa

&gt:gi|49388341|dbj|BAD25451.1| putative

Japonica

chlorophyll a/b-binding protein type III precursor

Group

[Oryza sativa Japonica Group]

&gt:gi|125538483|gb|EAY84878.1| hypothetical

protein OsI_06243 [Oryza sativa Indica Group]

&gt:gi|125581168|gb|EAZ22099.1| hypothetical

protein OsJ_05758 [Oryza sativa Japonica Group]

&gt:gi|215678980|dbj|BAG96410.1| unnamed protein

product [Oryza sativa Japonica Group]

&gt:gi|215679371|dbj|BAG96511.1| unnamed protein

product [Oryza sativa Japonica Group]

&gt:gi|215686386|dbj|BAG87647.1| unnamed protein

product [Oryza sativa Japonica Group]

&gt:gi|215737482|dbj|BAG96612.1| unnamed protein

product [Oryza sativa Japonica Group]

&gt:gi|215737505|dbj|BAG96635.1| unnamed protein

product [Oryza sativa Japonica Group]

&gt:gi|215737512|dbj|BAG96642.1| unnamed protein

product [Oryza sativa Japonica Group]

&gt:gi|215737560|dbj|BAG96690.1| unnamed protein

product [Oryza sativa Japonica Group]

&gt:gi|215737570|dbj|BAG96700.1| unnamed protein

product [Oryza sativa Japonica Group]

&gt:gi|215737580|dbj|BAG96710.1| unnamed protein

product [Oryza sativa Japonica Group]

&gt:gi|215737621|dbj|BAG96751.1| unnamed protein

product [Oryza sativa Japonica Group]

&gt:gi|215737634|dbj|BAG96764.1| unnamed protein

product [Oryza sativa Japonica Group]

&gt:gi|215737653|dbj|BAG96783.1| unnamed protein

product [Oryza sativa Japonica Group]

&gt:gi|215737729|dbj|BAG96859.1| unnamed protein

product [Oryza sativa Japonica Group]

&gt:gi|215737785|dbj|BAG96915.1| unnamed protein

product [Oryza sativa Japonica Group]

&gt:gi|215765646|dbj|BAG87343.1| unnamed protein

product [Oryza sativa Japonica Group]

&gt:gi|215767462|dbj|BAG99690.1| unnamed protein

product [Oryza sativa Japonica Group]

XP_002888084
297840404
hypothetical protein ARALYDRAFT_475174
0.805243

Arabidopsis

2288
2446

[Arabidopsis lyrata subsp. lyrata]

lyrata

&gt:gi|297333925|gb|EFH64343.1| hypothetical

subsp.

protein ARALYDRAFT_475174 [Arabidopsis lyrata

lyrata

subsp. lyrata]

NP_176347
30696581
light-harvesting complex I chlorophyll a/b binding
0.801498

Arabidopsis

2289
2447

protein 3 [Arabidopsis thaliana]

thaliana

&gt:gi|334183551|ref|NP_001185280.1| light-

harvesting complex I chlorophyll a/b binding protein 3

[Arabidopsis thaliana]

&gt:gi|4585882|gb|AAD25555.1|AC005850_12PSI

type III chlorophyll a/b-binding protein [Arabidopsis thaliana]

&gt:gi|16649019|gb|AAL24361.1| PSI type

III chlorophyll a/b-binding protein [Arabidopsis thaliana]

&gt:gi|20260044|gb|AAM13369.1| PSI type

III chlorophyll a/b-binding protein [Arabidopsis thaliana]

&gt:gi|332195725|gb|AEE33846.1| light-

harvesting complex I chlorophyll a/b binding protein 3

[Arabidopsis thaliana]

&gt:gi|332195727|gb|AEE33848.1| light-harvesting

complex I chlorophyll a/b binding protein 3

[Arabidopsis thaliana]

XP_002321218
224131949
light-harvesting complex I protein Lhca3 [Populus
0.805243

Populus

2290
2448

trichocarpa] &gt:gi|118485656|gb|ABK94678.1|

trichocarpa

unknown [Populus trichocarpa]

&gt:gi|222861991|gb|EEE99533.1| light-harvesting

complex I protein Lhca3 [Populus trichocarpa]

211-228
NP_001145838
226500499
hypothetical protein LOC100279347 [Zea mays]
1

Zea mays

2291
2449

&gt:gi|219884649|gb|ACL52699.1| unknown

[Zea mays]

437-454
NP_001060945
115474696
Os08g0135900 [Oryza sativa Japonica Group]
1

Oryza

2292
2450

&gt:gi|38636821|dbj|BAD03061.1| putative tryptophan

sativa

synthase beta-subunit [Oryza sativa Japonica Group]

Japonica

&gt:gi|46390803|dbj|BAD16309.1| putative tryptophan

Group

synthase beta-subunit [Oryza sativa Japonica Group]

&gt:gi|113622914|dbj|BAF22859.1| Os08g0135900

[Oryza sativa Japonica Group]

&gt:gi|125602115|gb|EAZ41440.1| hypothetical

protein OsJ_25962 [Oryza sativa Japonica Group]

&gt:gi|215704181|dbj|BAG93021.1| unnamed protein

product [Oryza sativa Japonica Group]

O50046

RecName: Full = Tryptophan synthase beta chain 2,
0.753715

Camptotheca

2293

chloroplastic; Flags: Precursor

acuminata

&gt:gi|2792520|gb|AAB97087.1| tryptophan synthase

beta subunit [Camptotheca acuminata ]

&gt:gi|2801771|gb|AAB97526.1| tryptophan synthase

beta [Camptotheca acuminata]

NP_194437
186514016
tryptophan synthase beta chain [Arabidopsis thaliana]
0.745223

Arabidopsis

2294
2451

&gt:gi|1174779|sp|P25269.2|TRBP2_ARATH

thaliana

RecName: Full = Tryptophan synthase beta chain 2,

chloroplastic; Flags: Precursor

&gt:gi|166894|gb|AAA32879.1| tryptophan synthase

beta-subunit [Arabidopsis thaliana]

&gt:gi|4490703|emb|CAB38837.1| tryptophan synthase

beta-subunit (TSB2) [Arabidopsis thaliana]

&gt:gi|7269560|emb|CAB79562.1| tryptophan synthase

beta-subunit (TSB2) [Arabidopsis thaliana]

&gt:gi|21536585|gb|AAM60917.1| tryptophan synthase

beta-subunit TSB2 [Arabidopsis thaliana]

&gt:gi|27808592|gb|AAO24576.1| At4g27070

[Arabidopsis thaliana]

&gt:gi|110736231|dbj|BAF00086.1| tryptophan

synthase beta-subunit [Arabidopsis thaliana]

&gt:gi|332659896|gb|AEE85296.1| tryptophan

synthase beta chain [Arabidopsis thaliana]

671-688
XP_002459719
242043695
hypothetical protein SORBIDRAFT_02g009320
1

Sorghum

2295
2452

[Sorghum bicolor] &gt:gi|241923096|gb|EER96240.1|

bicolor

hypothetical protein SORBIDRAFT_02g009320

[Sorghum bicolor]

NP_001148038
226505789
PVR3-like protein [Zea mays]
0.788462

Zea mays

2296
2453

&gt:gi|195615460|gb|ACG29560.1| PVR3-like protein

[Zea mays]

237-254
ACN28677
223949186
unknown [Zea mays]
1

Zea mays

2297
2454

CAE00460
66346994
branched-chain amino acid aminotransferase
0.761787

Hordeum

2298
2455

[Hordeum vulgare subsp. vulgare]

vulgare

subsp.

vulgare

NP_001049461
297600593
Os03g0231600 [Oryza sativa Japonica Group]
0.771712

Oryza

2299
2456

&gt:gi|27311239|gb|AAO00685.1| Unknown protein

sativa

[Oryza sativa Japonica Group]

Japonica

&gt:gi|27356673|gb|AAO06962.1| Putative branched-

Group

chain amino acid aminotransferase [Oryza sativa

Japonica Group] &gt:gi|108706990|gb|ABF94785.1|

Branched-chain-amino-acid aminotransferase 5,

chloroplast precursor, putative, expressed [Oryza sativa

Japonica Group] &gt:gi|113547932|dbj|BAF11375.1|

Os03g0231600 [Oryza sativa Japonica Group]

&gt:gi|125542999|gb|EAY89138.1| hypothetical

protein OsI_10629 [Oryza sativa Indica Group]

&gt:gi|215740973|dbj|BAG97468.1| unnamed protein

product [Oryza sativa Japonica Group]

&gt:gi|215767850|db;|BAH00079.1| unnamed protein

product [Oryza sativa Japonica Group]

ABF94786
108705663
Branched-chain-amino-acid aminotransferase 5,
0.771712

Oryza

2300

chloroplast precursor, putative, expressed [Oryza sativa

sativa

Japonica Group]

Japonica

Group

EEE58645
54398660
hypothetical protein OsJ_10024 [Oryza sativa Japonica
0.74938

Oryza

2301

Group]

sativa

Japonica

Group

237-254
NP_001147646
226510491
branched-chain-amino-acid aminotransferase [Zea
1

Zea mays

2302
2457

mays] &gt:gi|195612830|gb|ACG28245.1| branched-

chain-amino-acid aminotransferase [Zea mays]

ABF94786
108705663
Branched-chain-amino-acid aminotransferase 5,
0.754854

Oryza

2303

chloroplast precursor, putative, expressed [Oryza sativa

sativa

Japonica Group]

Japonica

Group

130-147
XP_002467798
242040806
hypothetical protein SORBIDRAFT_01g034300
1

Sorghum

2304
2458

[Sorghum bicolor] &gt:gi|241921652|gb|EER94796.1|

bicolor

hypothetical protein SORBIDRAFT_01g034300

[Sorghum bicolor]

ACG35330
195626999
cytochrome P450 CYP709H1 [Zea mays]
0.897004

Zea mays

2305
2459

BAJ94885
326498044
predicted protein [Hordeum vulgare subsp. vulgare]
0.807116

Hordeum

2306
2460

vulgare

subsp.

vulgare

26-Sep
NP_001150615
226531913
photoperiod responsive protein [Zea mays]
1

Zea mays

2307
2461

&gt:gi|195640592|gb|ACG39764.1| photoperiod

responsive protein [Zea mays]

BAK02161
326497152
predicted protein [Hordeum vulgare subsp. vulgare]
0.79955

Hordeum

2308
2462

vulgare

subsp.

vulgare

XP_002446455
242073037
hypothetical protein SORBIDRAFT_06g016300
0.837838

Sorghum

2309
2463

[Sorghum bicolor] &gt:gi|241937638|gb|EES10783.1|

bicolor

hypothetical protein SORBIDRAFT_06g016300

[Sorghum bicolor]

NP_001052772
115458343
Os04g0418500 [Oryza sativa Japonica Group]
0.759009

Oryza

2310
2464

&gt:gi|38605834|emb|CAE02914.3|

sativa

OSJNBb0108J11.6 [Oryza sativa Japonica Group]

Japonica

&gt:gi|113564343|dbj|BAF14686.1| Os04g0418500

Group

[Oryza sativa Japonica Group]

NP_001047062
115446564
Os02g0540700 [Oryza sativa Japonica Group]
0.70045

Oryza

2311
2465

&gt:gi|50251283|dbj|BAD28063.1| putative

sativa

photoperiod responsive protein [Oryza sativa Japonica

Japonica

Group] &gt:gi|113536593|dbj|BAF08976.1|

Group

Os02g0540700 [Oryza sativa Japonica Group]

EAY86195
54362548
hypothetical protein OsI_07571 [Oryza sativa Indica
0.70045

Oryza

2312

Group]

sativa

Indica

Group

Predicted
553-570
NP_001105321
162460315
homologue of Arabidopsis gene AGAMOUS [Zea mays]
1

Zea mays

2313
2466

siRNA

&gt:gi|309574|gb|AAA02933.1| homologue of

59453

Arabidopsis gene AGAMOUS [Zea mays]

1821-1838
NP_001130613
212274880
hypothetical protein LOC100191712 [Zea mays]
1

Zea mays

2314
2467

&gt:gi|194689638|gb|ACF78903.1| unknown

[Zea mays]

XP_002437583
242094185
hypothetical protein SORBIDRAFT_10g029780
0.935018

Sorghum

2315
2468

[Sorghum bicolor] &gt:gi|241915806|gb|EER88950.1|

bicolor

hypothetical protein SORBIDRAFT_10g029780

[Sorghum bicolor]

BAJ87739
326511450
predicted protein [Hordeum vulgare subsp. vulgare]
0.797834

Hordeum

2316
2469

vulgare

subsp.

vulgare

NP_001058556
115469913
Os06g0712300 [Oryza sativa Japonica Group]
0.790614

Oryza

2317
2470

&gt:gi|53792883|dbj|BAD54060.1| putative JD1

sativa

[Oryza sariva Japonica Group]

Japonica

&gt:gi|113596596|dbj|BAF20470.1| Os06g0712300

Group

[Oryza sativa Japonica Group]

EEC81300
54362548
hypothetical protein OsI_24436 [Oryza sativa Indica
0.787004

Oryza

2318

Group]

sativa

Indica

Group

EEE66342
54398660
hypothetical protein OsJ_22632 [Oryza sativa Japonica
0.725632

Oryza

2319

Group]

sativa

Japonica

Group

1068-1085
NP_001159145
259490077
hypothetical protein LOC100304227 [Zea mays]
1

Zea mays

2320
2471

&gt:gi|223942267|gb|ACN25217.1| unknown

[Zea mays]

65-82
ACN25589
223943010
unknown [Zea mays]
1

Zea mays

2321
2472

NP_001149752
226531311
receptor-like protein kinase RK20-1 [Zea mays]
1

Zea mays

2322
2473

&gt:gi|195631560|gb|ACG36675.1| receplor-like

protein kinase RK20-1 [Zea mays]

NP_001140883
226532087
hypothetical protein LOC100272959 [Zea mays]
1

Zea mays

2323
2474

&gt:gi|194701580|gb|ACF84874.1| unknown

[Zea mays]

XP_002462965
242050441
hypothetical protein SORBIDRAFT_02g035450
0.738617

Sorghum

2324
2475

[Sorghum bicolor] &gt:gi|241926342|gb|EER99486.1|

bicolor

hypothetical protein SORBIDRAFT_02g035450

[Sorghum bicolor]

XP_002462964
242050439
hypothetical protein SORBIDRAFT_02g035440
0.74199

Sorghum

2325
2476

[Sorghum bicolor] &gt:gi|241926341|gb|EER99485.1|

bicolor

hypothetical protein SORBIDRAFT_02g035440

[Sorghum bicolor]

BAJ96500
326517015
predicted protein [Hordeum vulgare subsp. vulgare]
0.706577

Hordeum

2326
2477

vulgare

subsp.

vulgare

Predicted
787-808
EEC67667
54362548
hypothetical protein OsI_35091 [Oryza sativa Indica
1

Oryza

2327

zma

Group]

sativa

mir

Indica

47990

Group

NP_001065737
115484150
Os11g0146700 [Oryza sativa Japonica Group]
0.98741

Oryza

2328
2478

&gt:gi|108863991|gb|ABA91466.2| expressed protein

sativa

[Oryza sativa Japonica Group]

Japonica

&gt:gi|113644441|dbj|BAF27582.1| Os11g0146700

Group

[Oryza sativa Japonica Group]

&gt:gi|215704119|dbj|BAG92959.1| unnamed protein

product [Oryza sativa Japonica Group]

&gt:gi|222615514|gb|EEE51646.1| hypothetical protein

OsJ_32953 [Oryza sativa Japonica Group]

XP_002441707
242082563
hypothetical protein SORBIDRAFT_08g001030
0.839928

Sorghum

2329
2479

[Sorghum bicolor] &gt:gi|241942400|gb|EES15545.1|

bicolor

hypothetical protein SORBIDRAFT_08g001030

[Sorghum bicolor]

EAY82236
54362548
hypothetical protein OsI_37441 [Oryza sativa Indica
0.890288

Oryza

2330

Group]

sativa

Indica

Group

NP_001105988
162458579
putative splicing factor [Zea mays]
0.841727

Zea mays

2331
2480

&gt:gi|134035227|gb|ABO47657.1| putative splicing

factor [Zea mays] &gt:gi|134035229|gb|ABO47658.1|

putative splicing factor [Zea mays]

ACG42564
195646191
hypothetical protein [Zea mays]
0.838129

Zea mays

2332
2481

NP_001066137
297612660
Os12g0143400 [Oryza sativa Japonica Group]
0.877698

Oryza

2333
2482

&gt:gi|77553658|gb|ABA96454.1| expressed protein

sativa

[Oryza sativa Japonica Group]

Japonica

&gt:gi|125578472|gb|EAZ19618.1| hypothetical

Group

protein OsJ_35195 [Oryza sativa Japonica Group]

&gt:gi|255670045|dbj|BAF29156.2| Os12g0143400

[Oryza sativa Japonica Group]

BAJ86249
326503485
predicted protein [Hordeum vulgare subsp. vulgare]
0.827338

Hordeum

2334
2483

vulgare

subsp.

vulgare

XP_002274576
225444598
PREDICTED: hypothetical protein isoform 1 [Vitis
0.733813

Vitis

2335
2484

vinifera] &gt:gi|297738505|emb|CBI27750.3| unnamed

vinifera

protein product [Vitis vinifera]

Predicted
222-242
XP_002456622
242054952
hypothetical protein SORBIDRAFT_03g039570
1

Sorghum

2336
2485

zma

[Sorghum bicolor] &gt:gi|241928597|gb|EES01742.1|

bicolor

mir

hypothetical protein SORBIDRAFT_03g039570

48459

[Sorghum bicolor]

ACG47007
195655078
L-ascorbate oxidase precursor [Zea mays]
0.939551

Zea mays

2337
2486

NP_001105921
162463583
putative laccase [Zea mays]
0.915371

Zea mays

2338
2487

&gt:gi|84618783|emb|CAJ30497.1| putative laccase

[Zea mays]

NP_001105874
162461267
putative laccase [Zea mays]
0.721934

Zea mays

2339
2488

&gt:gi|84618777|emb|CAJ30498.1| putative laccase

[Zea mays]

Q0DHL5

RecName: Full = Putative laccase-11; AltName:
0.715026

Oryza

2340

Full = Benzenediol: oxygen oxidoreductase 11;

sativa

AltName: Full = Diphenol oxidase 11; AltName:

Japonica

Full = Urishiol oxidase 11

Group

&gt:gi|222631843|gb|EEE63975.1| hypothetical protein

OsJ_18801 [Oryza sativa Japonica Group]

XP_002441216
242090766
hypothetical protein SORBIDRAFT_09g022460
0.71848

Sorghum

2341
2489

[Sorghum bicolor]

bicolor

&gt:gi|241946501|gb|EES19646.1|

hypothetical protein SORBIDRAFT_09g022460

[Sorghum bicolor]

Predicted
493-513
NP_001151803
226532099
tubulin--tyrosine ligase-like protein 12 [Zea mays]
1

Zea mays

2342
2490

zma

&gt:gi|195649775|gb|ACG44355.1| tubulin--tyrosine

mir

ligase-like protein 12 [Zea mays]

48824

NP_001049155
115451108
Os03g0179000 [Oryza sativa Japonica Group]
0.833716

Oryza

2343
2491

&gt:gi|108706494|gb|ABF94289.1| Tubulin-tyrosine

sativa

ligase family protein, expressed [Oryza sativa Japonica

Japonica

Group] &gt:gi|113547626|dbj|BAF11069.1|

Group

Os03g0179000

[Oryza sativa Japonica Group]

EEE58434
54398660
hypothetical protein OsJ_09642 [Oryza sativa Japonica
0.833716

Oryza

2344

Group]

sativa

Japonica

Group

ACN32043
223975710
unknown [Zea mays]
0.821101

Zea mays

2345
2492

BAJ96002
326512041
predicted protein [Hordeum vulgare subsp. vulgare]
0.811927

Hordeum

2346
2493

vulgare

subsp.

vulgare

EEC74627
54362548
hypothetical protein OsI_10249 [Oryza sativa Indica
0.794725

Oryza

2347

Group]

sativa

Indica

Group

AAO13468
26665711
Hypothetical protein [Oryza sativa Japonica Group]
0.787844

Oryza

2348

sativa

Japonica

Group

ABF94288
108705663
Tubulin-tyrosine ligase family protein, expressed
0.744266

Oryza

2349

[Oryza sativa Japonica Group]

sativa

Japonica

Group

Predicted
639-659
XP_002436323
242091665
hypothetical protein SORBIDRAFT_10g000450
1

Sorghum

2350
2494

zma

[Sorghum bicolor] &gt:gi|241914546|gb|EER87690.1|

bicolor

mir

hypothetical protein SORBIDRAFT_10g000450

49862

[Sorghum bicolor]

NP_001056548
115465897
Os06g0104100 [Oryza sativa Japonica Group]
0.847682

Oryza

2351
2495

&gt:gi|24413977|dbj|BAC22228.1| unknown protein

sativa

[Oryza sativa Japonica Group]

Japonica

&gt:gi|113594588|dbj|BAF18462.1| Os06g0104100

Group

[Oryza sativa Japonica Group]

&gt:gi|215766729|dbj|BAG98957.1| unnamed protein

product [Oryza sativa Japonica Group]

&gt:gi|218197401|gb|EEC79828.1| hypothetical

protein OsI_21284 [Oryza sativa Indica Group]

&gt:gi|222634813|gb|EEE64945.1| hypothetical protein

OsJ_19819 [Oryza sativa Japonica Group]

BAK06666
326504749
predicted protein [Hordeum vulgare subsp. vulgare]
0.847682

Hordeum

2352
2496

vulgare

subsp.

vulgare

NP_001151045
226532945
phytoene synthase [Zea mays]
0.86755

Zea mays

2353
2497

&gt:gi|195643862|gb|ACG41399.1| phytoene synthase

[Zea mays]

ACF84120
194700071
unknown [Zea mays]
0.768212

Zea mays

2354
2498

&gt:gi|224028481|gb|ACN33316.1| unknown [Zea

mays] &gt:gi|224033023|gb|ACN35587.1| unknown

[Zea mays]

NP_001132196
212722785
hypothetical protein LOC100193624 [Zea mays]
0.768212

Zea mays

2355
2499

&gt:gi|194692646|gb|ACF80407.1| unknown [Zea mays]

&gt:gi|194693728|gb|ACF80948.1| unknown

[Zea mays] &gt:gi|224035777|gb|ACN36964.1|

unknown [Zea mays]

&gt:gi|238014538|gb|ACR38304.1| unknown [Zea mays]

TABLE 22

Targets of small RNAs listed in Table 5 above

Mir
Homolog
Nucleotide

Mir
Binding
NCBI
NCBI

Protein
Nucleotide

name
Position
Accession
GI number
Annotation
Identity
Organism
seq id no:
seq id no:

Predicted

XP_848677
74013161
PREDICTED: similar to Retrovirus-related Pol
1

Canis familiaris

2500
3970

folded 24-

polyprotein from transposon 297 [Canis familiaris]

nts-long

seq 51391

AAL66751
18254408
putative gag-pol precursor [Zea mays]
0.79257

Zea mays

2501

&gt:gi|33113975|gb|AAP94597.1| putative gag-pol

precursor [Zea mays]

AAL75982
18568234
putative prpol [Zea mays]
0.806811

Zea mays

2502

Predicted
215-238
XP_002465068
242035346
hypothetical protein SORBIDRAFT_01g031560
1

Sorghum bicolor

2503
3971

folded 24-

[Sorghum bicolor]

nts-long

&gt:gi|241918922|gb|EER92066.1|

seq 52606

hypothetical protein SORBIDRAFT_01g031560

[Sorghum bicolor]

NP_001147458
226528231
LOC100281067 [Zea mays]
0.847599

Zea mays

2504
3972

&gt:gi|195611562|gb|ACG27611.1| indole-3-acetate

beta-glucosyltransferase [Zea mays]

BAK04808
326529722
predicted protein
0.73904

Hordeum vulgare subsp. vulgare
2505
3973

[Hordeum vulgare subsp. vulgare]

372-395
NP_001169556
293331934
hypothetical protein LOC100383435 [Zea mays]
1

Zea mays

2506
3974

&gt:gi|224030083|gb|ACN34117.1|

unknown [Zea mays]

ACN35262
224032372
unknown [Zea mays]
1

Zea mays

2507
3975

XP_002438139
242095297
hypothetical protein SORBIDRAFT_10g008670
0.85906

Sorghum bicolor

2508
3976

[Sorghum bicolor]

&gt:gi|241916362|gb|EER89506.1|

hypothetical protein SORBIDRAFT_10g008670

[Sorghum bicolor]

211-234
XP_002468043
242041296
hypothetical protein SORBIDRAFT_01g038540
1

Sorghum bicolor

2509
3977

[Sorghum bicolor]

&gt:gi|241921897|gb|EER95041.1|

hypothetical protein SORBIDRAFT_01g038540

[Sorghum bicolor]

CAC13988
10880264
phosphoinositide-specific phospholipase C
0.906621

Digitaria sanguinalis

2510
3978

[Digitaria sanguinalis]

ACF87551
194706933
unknown [Zea mays]
0.879457

Zea mays

2511
3979

EEE58849
54398660
hypothetical protein OsJ_10440
0.842105

Oryza sativa Japonica Group
2512

[Oryza sativa Japonica Group]

EEC75018
54362548
hypothetical protein OsI_11098
0.83871

Oryza sativa Indica Group
2513

[Oryza sativa Indica Group]

NP_001049792
297600758
Os03g0289300 [Oryza sativa Japonica Group]
0.842105

Oryza sativa Japonica Group
2514
3980

&gt:gi|255674423|dbj|BAF11706.2| Os03g0289300

[Oryza sativa Japonica Group]

NP_001130371
212275184
hypothetical protein LOC100191466 [Zea mays]
0.726655

Zea mays

2515
3981

&gt:gi|194688956|gb|ACF78562.1|

unknown [Zea mays]

ABF95389
108705663
phosphoinositide-specific phospholipase C, putative,
0.711375

Oryza sativa Japonica Group
2516
3982

expressed [Oryza sativa Japonica Group]

XP_002463446
242051403
hypothetical protein SORBIDRAFT_02g044010
0.721562

Sorghum bicolor

2517
3983

[Sorghum bicolor]

&gt:gi|241926823|gb|EER99967.1|

hypothetical protein SORBIDRAFT_02g044010

[Sorghum bicolor]

48-71
ACG39668
195640399
hypothetical protein [Zea mays]
1

Zea mays

2518
3984

NP_001130595
212276329
hypothetical protein LOC100191694 [Zea mays]
0.987562

Zea mays

2519
3985

&gt:gi|194689586|gb|ACF78877.1| unknown

[Zea mays]

XP_002460510
242045277
hypothetical protein SORBIDRAFT_02g029650
0.930348

Sorghum bicolor

2520
3986

[Sorghum bicolor]

&gt:gi|241923887|gb|EER97031.1|

hypothetical protein SORBIDRAFT_02g029650

[Sorghum bicolor]

NP_001063644
115480100
Os09g0512700 [Oryza sativa Japonica Group]
0.776119

Oryza sativa Japonica Group
2521
3987

&gt:gi|113631877|dbj|BAF25558.1| Os09g0512700

[Oryza sativa Japonica Group]

&gt:gi|215765318|dbj|BAG87015.1| unnamed protein

product [Oryza sativa Japonica Group]

EAZ09731
54362548
hypothetical protein OsI_32019
0.773632

Oryza sativa Indica Group
2522

[Oryza sativa Indica Group]

BAK01473
326532193
predicted protein [Hordeum vulgare subsp. vulgare]
0.701493

Hordeum vulgare subsp. vulgare
2523
3988

Predicted
968-991
NP_001168323
293337020
hypothetical protein LOC100382090 [Zea mays]
1

Zea mays

2524
3989

folded 24-

&gt:gi|223947455|gb|ACN27811.1|

nts-long

unknown [Zea mays]

seq 52682

XP_002447163
242074453
hypothetical protein SORBIDRAFT_06g029640
0.881423

Sorghum bicolor

2525
3990

[Sorghum bicolor]

&gt:gi|241938346|gb|EES11491.1|

hypothetical protein SORBIDRAFT_06g029640

[Sorghum bicolor]

BAK03641
326515455
predicted protein [Hordeum vulgare subsp. vulgare]
0.758893

Hordeum vulgare subsp. vulgare
2526
3991

CAH68069
90399260
H0105C05.5 [Oryza sativa Indica Group]
0.768775

Oryza sativa Indica Group
2527
3992

CAI44640
58532108
OSJNBb0015D13.11 [Oryza sativa Japonica Group]
0.768775

Oryza sativa Japonica Group
2528
3993

&gt:gi|125549861|gb|EAY95683.1| hypothetical

protein OsI_17548 [Oryza sativa Indica Group]

EAZ32093
54398660
hypothetical protein OsJ_16284
0.766798

Oryza sativa Japonica Group
2529

[Oryza sativa Japonica Group]

604-627
NP_001146934
226505051
ovate protein [Zea mays]
1

Zea mays

2530
3994

&gt:gi|195605346|gb|ACG24503.1| ovate protein

[Zea mays]

Predicted
130-151
XP_002441411
242091156
hypothetical protein SORBIDRAFT_09g026210
1

Sorghum bicolor

2531
3995

siRNA

[Sorghum bicolor]

54566

&gt:gi|241946696|gb|EES19841.1|

hypothetical protein SORBIDRAFT_09g026210

[Sorghum bicolor]

NP_001130268
212276204
hypothetical protein LOC100191362 [Zea mays]
0.956863

Zea mays

2532
3996

&gt:gi|194688708|gb|ACF78438.1| unknown

[Zea mays]

&gt:gi|195639384|gb|ACG39160.1|

seed maturation protein [Zea mays]

&gt:gi|19886847|gb|ACL53798.1| unknown

[Zea mays]

NP_001056102
115465004
Os05g0526400 [Oryza sativa Japonica Group]
0.854902

Oryza sativa Japonica Group
2533
3997

&gt:gi|52353496|gb|AAU44062.1| unknown protein

[Oryza sativa Japonica Group]

&gt:gi|113579653|dbj|BAF18016.1| Os05g0526400

[Oryza sativa Japonica Group]

&gt:gi|215737410|dbj|BAG96540.1| unnamed protein

product [Oryza sativa Japonica Group]

&gt:gi|215768410|dbj|BAH00639.1| unnamed protein

product [Oryza sativa Japonica Group]

&gt:gi|222632297|gb|EEE64429.1| hypothetical

protein OsJ_19273 [Oryza sativa Japonica Group]

EAY98759
54362548
hypothetical protein OsI_20691
0.839216

Oryza sativa Indica Group
2534

[Oryza sativa Indica Group]

NP_001149653
226529556
LOC100283279 [Zea mays]
0.827451

Zea mays

2535
3998

&gt:gi|195629032|gb|ACG36248.1| seed

maturation protein [Zea mays]

&gt:gi|223975305|gb|ACN31840.1| unknown

[Zea mays]

BAJ89699
326487429
predicted protein
0.792157

Hordeum vulgare subsp. vulgare
2536
3999

[Hordeum vulgare subsp. vulgare]

NP_001130478
212274956
hypothetical protein LOC100191576 [Zea mays]
0.811765

Zea mays

2537
4000

&gt:gi|194689240|gb|ACF78704.1| unknown

[Zea mays]

&gt:gi|194700430|gb|ACF84299.1| unknown

[Zea mays]

&gt:gi|195657175|gb|ACG48055.1| seed

maturation protein [Zea mays]

&gt:gi|238007632|gb|ACR34851.1| unknown

[Zea mays]

EAY75742
54362548
hypothetical protein OsI_03655
0.807843

Oryza sativa Indica Group
2538

[Oryza sativa Indica Group]

NP_001044177
115439794
Os01g0736900 [Oryza sativa Japonica Group]
0.8

Oryza sativa Japonica Group
2539
4001

&gt:gi|20160502|dbj|BAB89453.1| putative 24 kDa

seed maturation protein [Oryza sativa Japonica Group]

&gt:gi|113533708|dbj|BAF06091.1| Os01g0736900

[Oryza sativa Japonica Group]

&gt:gi|215694473|dbj|BAG89426.1| unnamed protein

product [Oryza sativa Japonica Group]

&gt:gi|215768164|dbj|BAH00393.1| unnamed protein

product [Oryza sativa Japonica Group]

74-95
ACG32549
195621437
seed maturation protein [Zea mays]
1

Zea mays

2540
4002

151-172
XP_002463496
242032202
hypothetical protein SORBIDRAFT_01g000790
1

Sorghum bicolor

2541
4003

[Sorghum bicolor]

&gt:gi|241917350|gb|EER90494.1|

hypothetical protein SORBIDRAFT_01g000790

[Sorghum bicolor]

NP_001144754
226493369
hypothetical protein LOC100277804 [Zea mays]
0.882834

Zea mays

2542
4004

&gt:gi|195646528|gb|ACG42732.1| hypothetical

protein [Zea mays]

NP_001051933
115456664
Os03g0853900 [Oryza sativa Japonica Group]
0.722071

Oryza sativa Japonica Group
2543
4005

&gt:gi|29126338|gb|AAO66530.1| putative p21

C-terminal-binding protein (alternative splicing

products) [Oryza sativa Japonica Group]

&gt:gi|108712161|gb|ABF99956.1| expressed protein

[Oryza sativa Japonica Group]

&gt:gi|113550404|dbj|BAF13847.1| Os03g0853900

[Oryza sativa Japonica Group]

&gt:gi|125546494|gb|EAY92633.1| hypothetical

protein OsI_14377 [Oryza sativa Indica Group]

&gt:gi|125588683|gb|EAZ29347.1| hypothetical

protein OsJ_13413 [Oryza sativa Japonica Group]

&gt:gi|215737372|dbj|BAG96301.1| unnamed protein

product [Oryza sativa Japonica Group]

BAK02069
326492571
predicted protein [Hordeum vulgare subsp. vulgare]
0.722071

Hordeum vulgare subsp. vulgare
2544
4006

&gt:gi|326505672|dbj|BAJ95507.1| predicted protein

[Hordeum vulgare subsp. vulgare]

842-863
NP_001152619
226506333
lactoylglutathione lyase [Zea mays]
1

Zea mays

2545
4007

&gt:gi|195658267|gb|ACG48601.1|

lactoylglutathione lyase [Zea mays]

NP_001149571
226500125
lactoylglutathione lyase [Zea mays]
0.77027

Zea mays

2546
4008

&gt:gi|194700264|gb|ACF84216.1| unknown

[Zea mays]

&gt:gi|195628124|gb|ACG35892.1|

lactoylglutathione lyase [Zea mays]

XP_002439371
242087076
hypothetical protein SORBIDRAFT_09g005270
0.752252

Sorghum bicolor

2547
4009

[Sorghum bicolor]

&gt:gi|241944656|gb|EES17801.1|

hypothetical protein SORBIDRAFT_09g005270

[Sorghum bicolor]

23-Feb
XP_002466636
242038482
hypothetical protein SORBIDRAFT_01g011390
1

Sorghum bicolor

2548
4010

[Sorghum bicolor]

&gt:gi|241920490|gb|EER93634.1|

hypothetical protein SORBIDRAFT_01g011390

[Sorghum bicolor]

NP_001105326
162460990
indole-3-acetate beta-glucosyltransferase [Zea mays]
0.833333

Zea mays

2549
4011

&gt:gi|2501499|sp|Q41819.1|IABG_MAIZE

RecName: Full = Indole-3-acetate beta-

glucosyltransferase; AltName: Full = (Uridine 5&apos:-

diphosphate-glucose: indol-3-ylacetyl)-beta-D-glucosyl

transferase; AltName: Full = IAA-Glu synthase

&gt:gi|548195|gb|AAA59054.1| IAA-glu synthetase

[Zea mays]

213-234
NP_001130342
212276285
hypothetical protein LOC100191437 [Zea mays]
1

Zea mays

2550
4012

&gt:gi|194688890|gb|ACF78529.1| unknown

[Zea mays]

256-277
ABF01001
93211179
lipoxygenase [Zea mays]
1

Zea mays

2551
4013

ABF01002
93211181
lipoxygenase [Zea mays]
0.887293

Zea mays

2552
4014

NP_001105981
162464185
lipoxygenase11 [Zea mays]
0.886188

Zea mays

2553
4015

&gt:gi|84626299|gb|ABC59694.1|

lipoxygenase [Zea mays]

ACL53739
219886728
unknown [Zea mays]
0.80663

Zea mays

2554
4016

ACN33257
224028362
unknown [Zea mays]
0.798895

Zea mays

2555
4017

BAK01953
326492338
predicted protein
0.733702

Hordeum vulgare subsp. vulgare
2556
4018

[Hordeum vulgare subsp. vulgare]

Q8GSM2

RecName: Full = Lipoxygenase 2.3, chloroplastic;
0.731492

Hordeum vulgare subsp. vulgare
2557

AltName: Full = LOX2: Hv: 3; Flags: Precursor

&gt:gi|25809278|emb|CAD45187.1| lipoxygenase 2

[Hordeum vulgare subsp. vulgare]

NP_001046180
115444800
Os02g0194700 [Oryza sativa Japonica Group]
0.710497

Oryza sativa Japonica Group
2558
4019

&gt:gi|49388109|dbj|BAD25240.1| putative

Lipoxygenase 2.3, chloroplast precursor

[Oryza sativa Japonica Group]

&gt:gi|113535711|dbj|BAF08094.1|

Os02g0194700 [Oryza sativa Japonica Group]

1784-1805
XP_002461846
242048199
hypothetical protein SORBIDRAFT_02g009170
1

Sorghum bicolor

2559
4020

[Sorghum bicolor]

&gt:gi|241925223|gb|EER98367.1|

hypothetical protein SORBIDRAFT_02g009170

[Sorghum bicolor]

NP_001183207
308081147
hypothetical protein LOC100501591 [Zea mays]
0.853949

Zea mays

2560
4021

&gt:gi|238010066|gb|ACR36068.1| unknown

[Zea mays]

BAC84446
50508886
putative receptor-type protein kinase LRK1
0.731744

Oryza sativa Japonica Group
2561

[Oryza sativa Japonica Group]

&gt:gi|50509358|dbj|BAD30821.1|

putative receptor-type protein kinase LRK1

[Oryza sativa Japonica Group]

EAZ03505
54362548
hypothetical protein OsI_25645
0.721311

Oryza sativa Indica Group
2562

[Oryza sativa Indica Group]

NP_001175142
297725556
Os07g0283125 [Oryza sativa Japonica Group]
0.722802

Oryza sativa Japonica Group
2563
4022

&gt:gi|125599841|gb|EAZ39417.1| hypothetical

protein OsJ_23853 [Oryza sativa Japonica Group]

&gt:gi|255677673|dbj|BAH93870.1| Os07g0283125

[Oryza sativa Japonica Group]

257-278
NP_001105980
162464002
lipoxygenase10 [Zea mays]
1

Zea mays

2564
4023

&gt:gi|84626297|gb|ABC59693.1| lipoxygenase

[Zea mays]

Predicted
216-237
NP_001131499
212720749
hypothetical protein LOC100192836 [Zea mays]
1

Zea mays

2565
4024

siRNA

&gt:gi|194691702|gb|ACF79935.1| unknown

54666

[Zea mays]

XP_002465188
242035586
hypothetical protein SORBIDRAFT_01g033660
0.710594

Sorghum bicolor

2566
4025

[Sorghum bicolor]

&gt:gi|241919042|gb|EER92186.1|

hypothetical protein SORBIDRAFT_01g033660

[Sorghum bicolor]

37-58
XP_002465922
242037054
hypothetical protein SORBIDRAFT_01g048270
1

Sorghum bicolor

2567
4026

[Sorghum bicolor]

&gt:gi|241919776|gb|EER92920.1|

hypothetical protein SORBIDRAFT_01g048270

[Sorghum bicolor]

NP_001149726
226502948
60S ribosomal protein L5-1 [Zea mays]
0.900662

Zea mays

2568
4027

&gt:gi|195629822|gb|ACG36552.1| 60S

ribosomal protein L5-1 [Zea mays]

ACR38045
238014019
unknown [Zea mays]
0.89404

Zea mays

2569
4028

NP_001151284
226510053
60S ribosomal protein L5-1 [Zea mays]
0.887417

Zea mays

2570
4029

&gt:gi|195645524|gb|ACG42230.1| 60S

ribosomal protein L5-1 [Zea mays]

BAJ89012
326527920
predicted protein
0.887417

Hordeum vulgare subsp. vulgare
2571
4030

[Hordeum vulgare subsp. vulgare]

A2WXX3

RecName: Full = 60S ribosomal protein L5-1
0.857616

Oryza sativa Indica Group
2572

&gt:gi|218189527|gb|EEC71954.1| hypothetical

protein OsI_04779 [Oryza sativa Indica Group]

NP_001045083
115441606
Os01g0896800 [Oryza sativa Japonica Group]
0.857616

Oryza sativa Japonica Group
2573
4031

&gt:gi|122222375|sp|Q0JGY1.1|RL51_ORYSJ

RecName: Full = 60S ribosomal protein L5-1

&gt:gi|56785265|dbj|BAD82174.1| putative ribosomal

protein L5 [Oryza sativa Japonica Group]

&gt:gi|113534614|dbj|BAF06997.1| Os01g0896800

[Oryza sativa Japonica Group]

&gt:gi|169244415|gb|ACA50481.1| 60S ribosomal

protein L5 [Oryza sativa Japonica Group]

&gt:gi|215737756|dbj|BAG96886.1| unnamed protein

product [Oryza sativa Japonica Group]

BAD82173
22093582
putative ribosomal protein L5
0.854305

Oryza sativa Japonica Group
2574

[Oryza sativa Japonica Group]

&gt:gi|169244413|gb|ACA50480.1| 60S

ribosomal protein L5 [Oryza sativa Japonica Group]

&gt:gi|218189526|gb|EEC71953.1| hypothetical

protein OsI_04778 [Oryza sativa Indica Group]

&gt:gi|222619675|gb|EEE55807.1| hypothetical

protein OsJ_04400 [Oryza sativa Japonica Group]

BAC06273
21952828
putative 60S ribosomal protein L5
0.847682

Oryza sativa Japonica Group
2575

[Oryza sativa Japonica Group]

&gt:gi|125572963|gb|EAZ14478.1|

hypothetical protein OsJ_04401

[Oryza sativa Japonica Group]

Q8L4L4

RecName: Full = 60S ribosomal protein L5-2
0.844371

Oryza sativa Japonica Group
2576

&gt:gi|313103586|pdb|3IZ5|Q Chain Q, Localization

Of The Large Subunit Ribosomal Proteins Into A 5.5

A Cryo-Em Map Of Triticum Aestivum Translating

80s Ribosome &gt:gi|315113258|pdb|3IZR|Q Chain

Q, Localization Of The Large Subunit Ribosomal

Proteins Into A 5.5 A Cryo-Em Map Of

Triticum Aestivum Translating 80s Ribosome

&gt:gi|21952857|dbj|BAC06272.1| putative 60S

ribosomal protein L5 [Oryza sativa Japonica Group]

292-313
NP_001136748
219362396
hypothetical protein LOC100216889 [Zea mays]
1

Zea mays

2577
4032

&gt:gi|194696888|gb|ACF82528.1| unknown

[Zea mays]

XP_002441226
242090786
hypothetical protein SORBIDRAFT_09g022730
0.738806

Sorghum bicolor

2578
4033

[Sorghum bicolor]

&gt:gi|241946511|gb|EES19656.1|

hypothetical protein SORBIDRAFT_09g022730

[Sorghum bicolor]

376-397
XP_002436516
242092051
hypothetical protein SORBIDRAFT_10g004010
1

Sorghum bicolor

2579
4034

[Sorghum bicolor]

&gt:gi|241914739|gb|EER87883.1|

hypothetical protein SORBIDRAFT_10g004010

[Sorghum bicolor]

NP_001145738
226529448
hypothetical protein LOC100279245 [Zea mays]
0.920388

Zea mays

2580
4035

&gt:gi|219884233|gb|ACL52491.1| unknown

[Zea mays]

NP_001159047
259490760
hypothetical protein LOC100304073 [Zea mays]
0.904854

Zea mays

2581
4036

&gt:gi|195644974|gb|ACG41955.1| hypothetical

protein [Zea mays]

EEC80051
54362548
hypothetical protein OsI_21754
0.786408

Oryza sativa Indica Group
2582

[Oryza sativa Indica Group]

EEE65126
54398660
hypothetical protein OsJ_20196
0.782524

Oryza sativa Japonica Group
2583

[Oryza sativa Japonica Group]

362-383
NP_001149452
226510424
LOC100283078 [Zea mays]
1

Zea mays

2584
4037

&gt:gi|195627344|gb|ACG35502.1|

lipopolysaccharide-modifying protein

[Zea mays]

XP_002443683
242077828
hypothetical protein SORBIDRAFT_07g000280
0.726667

Sorghum bicolor

2585
4038

[Sorghum bicolor]

&gt:gi|241940033|gb|EES13178.1|

hypothetical protein SORBIDRAFT_07g000280

[Sorghum bicolor]

211-232
ACN33370
224028588
unknown [Zea mays]
1

Zea mays

2586
4039

XP_002447369
242074865
hypothetical protein SORBIDRAFT_06g033830
0.865526

Sorghum bicolor

2587
4040

[Sorghum bicolor]

&gt:gi|241938552|gb|EES11697.1|

hypothetical protein SORBIDRAFT_06g033830

[Sorghum bicolor]

CAB53491
5777612
CAA303718.1 protein [Oryza sativa]
0.735941

Oryza sativa

2588
4041

&gt:gi|90399023|emb|CAJ86143.1| H0701F11.9

[Oryza sativa Indica Group]

&gt:gi|116311977|emb|CAJ86335.1| H0814G11.2

[Oryza sativa Indica Group]

EAY96137
54362548
hypothetical protein OsI_18016
0.718826

Oryza sativa Indica Group
2589

[Oryza sativa Indica Group]

EEE61953
54398660
hypothetical protein OsJ_16714
0.706601

Oryza sativa Japonica Group
2590

[Oryza sativa Japonica Group]

128-149
XP_002451458
242060337
hypothetical protein SORBIDRAFT_04g002290
1

Sorghum bicolor

2591
4042

[Sorghum bicolor]

&gt:gi|241931289|gb|EES04434.1|

hypothetical protein SORBIDRAFT_04g002290

[Sorghum bicolor]

NP_001146328
226493387
hypothetical protein LOC100279904 [Zea mays]
0.824798

Zea mays

2592
4043

&gt:gi|219886655|gb|ACL53702.1| unknown

[Zea mays]

544-565
XP_002454331
242066083
hypothetical protein SORBIDRAFT_04g028790
1

Sorghum bicolor

2593
4044

[Sorghum bicolor]

&gt:gi|241934162|gb|EES07307.1|

hypothetical protein SORBIDRAFT_04g028790

[Sorghum bicolor]

NP_001057318
115467437
Os06g0256900 [Oryza sativa Japonica Group]
0.875

Oryza sativa Japonica Group
2594
4045

&gt:gi|75253245|sp|Q652F9.1|GUN17_ORYSJ

RecName: Full = Endoglucanase 17; AltName:

Full = Endo-1,4-beta glucanase 17; AltName:

Full = OsGLU13; Flags: Precursor

&gt:gi|52077266|dbj|BAD46308.1|

putative endo-1,4-beta-glucanase precursor

[Oryza sativa Japonica Group]

&gt:gi|113595358|dbj|BAF19232.1|

Os06g0256900 [Oryza sativa Japonica Group]

&gt:gi|125596749|gb|EAZ36529.1| hypothetical

protein OsJ_20865 [Oryza sativa Japonica Group]

NP_001048033
115448506
Os02g0733300 [Oryza sativa Japonica Group]
0.890873

Oryza sativa Japonica Group
2595
4046

&gt:gi|75225300|sp|Q6Z2J3.1|GUN6_ORYSJ

RecName: Full = Endoglucanase 6; AltName:

Full = Endo-1,4-beta glucanase 6; AltName:

Full = OsCel9E; Flags: Precursor

&gt:gi|46390665|dbj|BAD16147.1|

putative endo-1,4-beta-glucanase

[Oryza sativa Japonica Group]

&gt:gi|113537564|dbj|BAF09947.1| Os02g0733300

[Oryza sativa Japonica Group]

&gt:gi|215704889|dbj|BAG94917.1| unnamed protein

product [Oryza sativa Japonica Group]

&gt:gi|215740598|dbj|BAG97254.1| unnamed protein

product [Oryza sativa Japonica Group]

ACG39876
195640815
endoglucanase 1 precursor [Zea mays]
0.934524

Zea mays

2596
4047

BAJ85886
326495579
predicted protein
0.853175

Hordeum vulgare subsp. vulgare
2597
4048

[Hordeum vulgare subsp. vulgare]

BAK01727
326489492
predicted protein
0.823413

Hordeum vulgare subsp. vulgare
2598
4049

[Hordeum vulgare subsp. vulgare]

ACN25509
223942850
unknown [Zea mays]
0.801587

Zea mays

2599
4050

NP_001136728
219363410
hypothetical protein LOC100216867 [Zea mays]
0.81746

Zea mays

2600
4051

&gt:gi|194699722|gb|ACF83945.1| unknown

[Zea mays]

778-799
XP_002437997
242095013
hypothetical protein SORBIDRAFT_10g006130
1

Sorghum bicolor

2601
4052

[Sorghum bicolor]

&gt:gi|241916220|gb|EER89364.1|

hypothetical protein SORBIDRAFT_10g006130

[Sorghum bicolor]

AAK73111
166008041
serine threonine kinase 1 [Zea mays]
0.93593

Zea mays

2602

&gt:gi|145309042|gb|ABP57732.1| Tassel serine

threonine kinase 1 [Zea mays]

ACA21852
168251061
serine threonine kinase 1 [Zea mays]
0.896985

Zea mays

2603

EEE65245
54398660
hypothetical protein OsJ_20418
0.815327

Oryza sativa Japonica Group
2604

[Oryza sativa Japonica Group]

BAK06108
326499234
predicted protein
0.802764

Hordeum vulgare subsp. vulgare
2605
4053

[Hordeum vulgare subsp. vulgare]

EAY99981
54362548
hypothetical protein OsI_21985
0.762563

Oryza sativa Indica Group
2606

[Oryza sativa Indica Group]

103-124
XP_002468218
242041646
hypothetical protein SORBIDRAFT_01g041990
1

Sorghum bicolor

2607
4054

[Sorghum bicolor]

&gt:gi|241922072|gb|EER95216.1|

hypothetical protein SORBIDRAFT_01g041990

[Sorghum bicolor]

NP_001150369
226490909
LOC100283999 [Zea mays]
0.962085

Zea mays

2608
4055

&gt:gi|195638716|gb|ACG38826.1|

maf-like protein CV_0124

[Zea mays]

BAJ91214
326505949
predicted protein
0.914692

Hordeum vulgare subsp. vulgare
2609
4056

[Hordeum vulgare subsp. vulgare]

ABF94776
108705663
Maf family protein, putative, expressed
0.914692

Oryza sativa Japonica Group
2610
4057

[Oryza sativa Japonica Group]

EEC74808
54362548
hypothetical protein OsI_10622
0.881517

Oryza sativa Indica Group
2611

[Oryza sativa Indica Group]

&gt:gi|222624509|gb|EEE58641.1|

hypothetical protein OsJ_10016

[Oryza sativa Japonica Group]

556-577
NP_001170197
293334350
hypothetical protein LOC100384147 [Zea mays]
1

Zea mays

2612
4058

&gt:gi|224034241|gb|ACN36196.1| unknown

[Zea mays]

XP_002468612
242042434
hypothetical protein SORBIDRAFT_01g048980
0.928846

Sorghum bicolor

2613
4059

[Sorghum bicolor]

&gt:gi|241922466|gb|EER95610.1|

hypothetical protein SORBIDRAFT_01g048980

[Sorghum bicolor]

NP_001048804
115450406
Os03g0123300 [Oryza sativa Japonica Group]
0.857692

Oryza sativa Japonica Group
2614
4060

&gt:gi|108705924|gb|ABF93719.1| Fizzy-related

protein, putative, expressed

[Oryza sativa Japonica Group]

&gt:gi|113547275|dbj|BAF10718.1|

Os03g0123300 [Oryza sativa Japonica Group]

&gt:gi|215697879|dbj|BAG92072.1| unnamed protein

product [Oryza sativa Japonica Group]

AAN74839
24942863
Putative cell cycle switch protein
0.851923

Oryza sativa Japonica Group
2615
4061

[Oryza sativa Japonica Group]

BAK01604
326489240
predicted protein
0.778846

Hordeum vulgare subsp. vulgare
2616
4062

[Hordeum vulgare subsp. vulgare]

1689-1710
ACN35345
224032538
unknown [Zea mays]
1

Zea mays

2617
4063

40-61
ACR35596
238009121
unknown [Zea mays]
1

Zea mays

2618
4064

NP_001167964
293337176
hypothetical protein LOC100381680 [Zea mays]
0.723005

Zea mays

2619
4065

&gt:gi|223945177|gb|ACN26672.1| unknown

[Zea mays]

135-156
XP_002437370
242093759
hypothetical protein SORBIDRAFT_10g025700
1

Sorghum bicolor

2620
4066

[Sorghum bicolor]

&gt:gi|241915593|gb|EER88737.1|

hypothetical protein SORBIDRAFT_10g025700

[Sorghum bicolor]

NP_001169745
293337166
hypothetical protein LOC100383626 [Zea mays]
0.957878

Zea mays

2621
4067

&gt:gi|224031377|gb|ACN34764.1| unknown

[Zea mays]

EEC81091
54362548
hypothetical protein OsI_23922
0.840874

Oryza sativa Indica Group
2622

[Oryza sativa Indica Group]

NP_001058222
115469245
Os06g0650600 [Oryza sativa Japonica Group]
0.840874

Oryza sativa Japonica Group
2623
4068

&gt:gi|51534986|dbj|BAD38110.1| endomembrane

protein 70-like [Oryza sativa Japonica Group]

&gt:gi|113596262|dbj|BAF20136.1| Os06g0650600

[Oryza sativa Japonica Group]

&gt:gi|215694831|dbj|BAG90022.1| unnamed protein

product [Oryza sativa Japonica Group]

ACG29725
195615789
transmembrane 9 superfamily protein member
0.806552

Zea mays

2624
4069

4 [Zea mays]

NP_001146016
226492185
hypothetical protein LOC100279547 [Zea mays]
0.803432

Zea mays

2625
4070

&gt:gi|219885331|gb|ACL53040.1| unknown

[Zea mays]

XP_002437369
242093757
hypothetical protein SORBIDRAFT_10g025690
0.809672

Sorghum bicolor

2626
4071

[Sorghum bicolor]

&gt:gi|241915592|gb|EER88736.1|

hypothetical protein SORBIDRAFT_10g025690

[Sorghum bicolor]

XP_002445411
242081284
hypothetical protein SORBIDRAFT_07g016310
0.798752

Sorghum bicolor

2627
4072

[Sorghum bicolor]

&gt:gi|241941761|gb|EES14906.1|

hypothetical protein SORBIDRAFT_07g016310

[Sorghum bicolor]

NP_001130383
212275585
hypothetical protein LOC100191479 [Zea mays]
0.794072

Zea mays

2628
4073

&gt:gi|194688986|gb|ACF78577.1| unknown

[Zea mays]

&gt:gi|195614790|gb|ACG29225.1|

transmembrane 9 superfamily protein member 2

precursor [Zea mays]

XP_002529382
255576994
Endosomal P24A protein precursor, putative
0.792512

Ricinus communis

2629
4074

[Ricinus communis]

&gt:gi|223531130|gb|EEF32978.1|

Endosomal P24A protein precursor, putative

[Ricinus communis]

698-719
ACR38139
238014207
unknown [Zea mays]
1

Zea mays

2630
4075

ACG26030
195608399
homeobox domain containing protein
0.987302

Zea mays

2631
4076

[Zea mays]

XP_002465335
242035880
hypothetical protein SORBIDRAFT_01g036670
0.873016

Sorghum bicolor

2632
4077

[Sorghum bicolor]

&gt:gi|241919189|gb|EER92333.1|

hypothetical protein SORBIDRAFT_01g036670

[Sorghum bicolor]

NP_001049985
115452768
Os03g0325600 [Oryza sativa Japonica Group]
0.704762

Oryza sativa Japonica Group
2633
4078

&gt:gi|122247076|sp|Q10M29.1|WOX6_ORYSJ

RecName: Full = WUSCHEL-related homeobox 6;

AltName: Full = OsWOX6

&gt:gi|108707914|gb|ABF95709.1| Homeobox

domain containing protein, expressed

[Oryza sativa Japonica Group]

&gt:gi|113548456|dbj|BAF11899.1|

Os03g0325600 [Oryza sativa Japonica Group]

A2XG77

RecName: Full = WUSCHEL-related homeobox 6;
0.704762

Oryza sativa Indica Group
2634

AltName: Full = OsWOX6

&gt:gi|125543698|gb|EAY89837.1|

hypothetical protein OsI_11385

[Oryza sativa Indica Group]

328-349
NP_001130841
212276171
hypothetical protein LOC100191945 [Zea mays]
1

Zea mays

2635
4079

&gt:gi|194690250|gb|ACF79209.1| unknown

[Zea mays]

&gt:gi|195636434|gb|ACG37685.1|

hypothetical protein [Zea mays]

&gt:gi|195640568|gb|ACG39752.1| hypothetical

protein [Zea mays]

NP_001144387
226531256
hypothetical protein LOC100277315 [Zea mays]
0.891304

Zea mays

2636
4080

&gt:gi|195641390|gb|ACG40163.1| hypothetical

protein [Zea mays]

EEE67740
54398660
hypothetical protein OsJ_25431
0.791925

Oryza sativa Japonica Group
2637

[Oryza sativa Japonica Group]

EAZ05000
54362548
hypothetical protein OsI_27180
0.785714

Oryza sativa Indica Group
2638

[Oryza sativa Indica Group]

BAC15474
22775614
unknown protein [Oryza sativa Japonica Group]
0.782609

Oryza sativa Japonica Group
2639
4081

&gt:gi|50510136|dbj|BAD31101.1| unknown protein

[Oryza sativa Japonica Group]

BAJ85816
326495439
predicted protein
0.742236

Hordeum vulgare subsp. vulgare
2640
4082

[Hordeum vulgare subsp. vulgare]

BAJ87777
326513515
predicted protein
0.742236

Hordeum vulgare subsp. vulgare
2641
4083

[Hordeum vulgare subsp. vulgare]

259-280
XP_002465189
242035588
hypothetical protein SORBIDRAFT_01g033670
1

Sorghum bicolor

2642
4084

[Sorghum bicolor]

&gt:gi|241919043|gb|EER92187.1|

hypothetical protein SORBIDRAFT_01g033670

[Sorghum bicolor]

589-610
AAV64214
55741072
stk [Zea mays]
1

Zea mays

2643
4085

EEC74143
54362548
hypothetical protein OsI_09217
0.707953

Oryza sativa Indica Group
2644

[Oryza sativa Indica Group]

NP_001048340
115449120
Os02g0787200 [Oryza sativa Japonica Group]
0.706649

Oryza sativa Japonica Group
2645
4086

&gt:gi|47497167|dbj|BAD19215.1| putative serine

threonine kinase [Oryza sativa Japonica Group]

&gt:gi|47497752|dbj|BAD19852.1| putative serine

threonine kinase [Oryza sativa Japonica Group]

&gt:gi|113537871|dbj|BAF10254.1| Os02g0787200

[Oryza sativa Japonica Group]

89-110
NP_001147835
226528692
lectin-like receptor kinase 7 [Zea mays]
1

Zea mays

2646
4087

&gt:gi|195614030|gb|ACG28845.1| lectin-like

receptor kinase 7 [Zea mays]

XP_002463621
242032452
hypothetical protein SORBIDRAFT_01g003030
0.860704

Sorghum bicolor

2647
4088

[Sorghum bicolor]

&gt:gi|241917475|gb|EER90619.1|

hypothetical protein SORBIDRAFT_01g003030

[Sorghum bicolor]

169-190
XP_002467786
242040782
hypothetical protein SORBIDRAFT_01g034030
1

Sorghum bicolor

2648
4089

[Sorghum bicolor]

&gt:gi|241921640|gb|EER94784.1|

hypothetical protein SORBIDRAFT_01g034030

[Sorghum bicolor]

NP_001141138
226530821
hypothetical protein LOC100273224 [Zea mays]
0.903353

Zea mays

2649
4090

&gt:gi|194702834|gb|ACF85501.1| unknown

[Zea mays]

NP_001141473
226499929
hypothetical protein LOC100273583 [Zea mays]
0.90927

Zea mays

2650
4091

&gt:gi|194704720|gb|ACF86444.1| unknown

[Zea mays]

BAK05639
326491078
predicted protein
0.745562

Hordeum vulgare subsp. vulgare
2651
4092

[Hordeum vulgare subsp. vulgare]

NP_001050230
115453258
Os03g0378000 [Oryza sativa Japonica Group]
0.755424

Oryza sativa Japonica Group
2652
4093

&gt:gi|108708445|gb|ABF96240.1| GDA1/CD39

family protein, expressed

[Oryza sativa Japonica Group]

&gt:gi|113548701|dbj|BAF12144.1|

Os03g0378000 [Oryza sativa Japonica Group]

&gt:gi|215704674|dbj|BAG94302.1| unnamed protein

product [Oryza sativa Japonica Group]

EEC75360
54362548
hypothetical protein OsI_11798
0.751479

Oryza sativa Indica Group
2653

[Oryza sativa Indica Group]

EEE59145
54398660
hypothetical protein OsJ_11044
0.749507

Oryza sativa Japonica Group
2654

[Oryza sativa Japonica Group]

178-199
XP_002463998
242033206
hypothetical protein SORBIDRAFT_01g010290
1

Sorghum bicolor

2655
4094

[Sorghum bicolor]

&gt:gi|241917852|gb|EER90996.1|

hypothetical protein SORBIDRAFT_01g010290

[Sorghum bicolor]

NP_001151626
226498593
atypical receptor-like kinase MARK [Zea mays]
0.873563

Zea mays

2656
4095

&gt:gi|195648190|gb|ACG43563.1| atypical

receptor-like kinase MARK [Zea mays]

NP_001105207
162459880
atypical receptor-like kinase MARK [Zea mays]
0.906609

Zea mays

2657
4096

&gt:gi|37778684|gb|AAO83390.1| atypical

receptor-like kinase MARK [Zea mays]

AAK18840
13249436
putative receptor kinase
0.760057

Oryza sativa Japonica Group
2658
4097

[Oryza sativa Japonica Group]

&gt:gi|108710729|gb|ABF98524.1| atypical

receptor-like kinase MARK, putative, expressed

[Oryza sativa Japonica Group]

376-397
NP_001146675
226530240
hypothetical protein LOC100280275 [Zea mays]
1

Zea mays

2659
4098

&gt:gi|219888259|gb|ACL54504.1| unknown

[Zea mays]

ACN28169
223948170
unknown [Zea mays]
0.727083

Zea mays

2660
4099

1237-1258
NP_001131617
239048016
hypothetical protein LOC100192969 [Zea mays]
1

Zea mays

2661
4100

&gt:gi|238908597|gb|ACF80108.2| unknown

[Zea mays]

EAZ00403
54362548
hypothetical protein OsI_22418
0.869565

Oryza sativa Indica Group
2662

[Oryza sativa Indica Group]

NP_001136728
219363410
hypothetical protein LOC100216867 [Zea mays]
0.804348

Zea mays

2663
4101

&gt:gi|194699722|gb|ACF83945.1| unknown

[Zea mays]

72-93
XP_002438795
242096609
hypothetical protein SORBIDRAFT_10g026410
1

Sorghum bicolor

2664
4102

[Sorghum bicolor]

&gt:gi|241917018|gb|EER90162.1|

hypothetical protein SORBIDRAFT_10g026410

[Sorghum bicolor]

NP_001146201
226533323
hypothetical protein LOC100279771 [Zea mays]
0.931174

Zea mays

2665
4103

&gt:gi|219886163|gb|ACL53456.1| unknown

[Zea mays]

EAZ01968
54362548
hypothetical protein OsI_24000
0.717949

Oryza sativa Indica Group
2666

[Oryza sativa Indica Group]

BAD45848
47169781
putative microtubule-associated protein
0.717949

Oryza sativa Japonica Group
2667
4104

[Oryza sativa Japonica Group]

&gt:gi|52077384|dbj|BAD46424.1|

putative microtubule-associated protein

[Oryza sativa Japonica Group]

&gt:gi|125598116|gb|EAZ37896.1| hypothetical

protein OsJ_22246 [Oryza sativa Japonica Group]

&gt:gi|215695188|dbj|BAG90379.1|

unnamed protein product [Oryza sativa Japonica Group]

778-799
NP_001183778
308081574
hypothetical protein LOC100502371 [Zea mays]
1

Zea mays

2668
4105

&gt:gi|18092335|gb|AAL59227.1|AF448416_5 serine

threonine kinase [Zea mays]

35-56
XP_002437861
242094741
hypothetical protein SORBIDRAFT_10g003930
1

Sorghum bicolor

2669
4106

[Sorghum bicolor]

&gt:gi|241916084|gb|EER89228.1|

hypothetical protein SORBIDRAFT_10g003930

[Sorghum bicolor]

ACN31616
223974856
unknown [Zea mays]
0.891008

Zea mays

2670
4107

NP_001168581
293337218
hypothetical protein LOC100382365 [Zea mays]
0.899183

Zea mays

2671
4108

&gt:gi|223944685|gb|ACN26426.1| unknown

[Zea mays]

&gt:gi|223949323|gb|ACN28745.1|

unknown [Zea mays]

EEE65121
54398660
hypothetical protein OsJ_20187
0.825613

Oryza sativa Japonica Group
2672

[Oryza sativa Japonica Group]

BAJ90380
326494221
predicted protein [Hordeum vulgare subsp. vulgare]
0.803815

Hordeum vulgare subsp. vulgare
2673
4109

&gt:gi|326494274|dbj|BAJ90406.1| predicted protein

[Hordeum vulgare subsp. vulgare]

ABL11233
118725124
UCW116, putative lipase
0.803815

Hordeum vulgare subsp. vulgare
2674
4110

[Hordeum vulgare subsp. vulgare]

NP_001141565
226507421
hypothetical protein LOC100273681 [Zea mays]
0.779292

Zea mays

2675
4111

&gt:gi|194705086|gb|ACF86627.1| unknown

[Zea mays]

ACG38031
195637125
alpha-L-fucosidase 2 precursor [Zea mays]
0.779292

Zea mays

2676
4112

XP_002453668
242064757
hypothetical protein SORBIDRAFT_04g010100
0.760218

Sorghum bicolor

2677
4113

[Sorghum bicolor]

&gt:gi|241933499|gb|EES06644.1|

hypothetical protein SORBIDRAFT_04g010100

[Sorghum bicolor]

NP_001056858
115466517
Os06g0157000 [Oryza sativa Japonica Group]
0.757493

Oryza sativa Japonica Group
2678
4114

&gt:gi|113594898|dbj|BAF18772.1| Os06g0157000

[Oryza sativa Japonica Group]

Predicted
214-235
NP_001131499
212720749
hypothetical protein LOC100192836 [Zea mays]
1

Zea mays

2679
4115

siRNA

&gt:gi|494691702|gb|ACF79935.1| unknown

55684

[Zea mays]

275-296
NP_001150152
226497009
LOC100283781 [Zea mays]
1

Zea mays

2680
4116

&gt:gi|195637168|gb|ACG38052.1| cathepsin B-like

cysteine proteinase 3 precursor [Zea mays]

ACY38050
262217336
cathepsin B [Dactylis glomerata]
0.786744

Dactylis glomerata

2681
4117

BAG90919
32978477
unnamed protein product
0.789625

Oryza sativa Japonica Group
2682
4118

[Oryza sativa Japonica Group]

CAQ00112
194352767
papain-like cysteine proteinase
0.743516

Hordeum vulgare subsp. vulgare
2683
4119

[Hordeum vulgare subsp. vulgare]

&gt:gi|326488519|dbj|BAJ93928.1| predicted

protein [Hordeum vulgare subsp. vulgare]

&gt:gi|326508126|dbj|BAJ99330.1| predicted

protein [Hordeum vulgare subsp. vulgare]

CAC83720
40643249
cathepsin B [Hordeum vulgare subsp. vulgare]
0.74928

Hordeum vulgare subsp. vulgare
2684
4120

&gt:gi|326494236|dbj|BAJ90387.1| predicted

protein [Hordeum vulgare subsp. vulgare]

&gt:gi|326499864|dbj|BAJ90767.1| predicted

protein [Hordeum vulgare subsp. vulgare]

BAJ90118
326490901
predicted protein [Hordeum vulgare subsp. vulgare]
0.737752

Hordeum vulgare subsp. vulgare
2685
4121

&gt:gi|326508404|dbj|BAJ99469.1| predicted

protein [Hordeum vulgare subsp. vulgare]

&gt:gi|326514912|dbj|BAJ99817.1| predicted

protein [Hordeum vulgare subsp. vulgare]

CAA46810
21692
cathepsin B [Triticum aestivum]
0.73487

Triticum aestivum

2686
4122

CAA46811
21698
cathepsin B [Triticum aestivum]
0.717579

Triticum aestivum

2687
4123

260-281
NP_001146149
226505901
hypothetical protein LOC100279718 [Zea mays]
1

Zea mays

2688
4124

&gt:gi|219885973|gb|ACL53361.1| unknown

[Zea mays]

XP_002463310
242051131
hypothetical protein SORBIDRAFT_02g041560
0.802419

Sorghum bicolor

2689
4125

[Sorghum bicolor]

&gt:gi|241926687|gb|EER99831.1|

hypothetical protein SORBIDRAFT_02g041560

[Sorghum bicolor]

654-675
NP_001143915
226500557
hypothetical protein LOC100276723 [Zea mays]
1

Zea mays

2690
4126

&gt:gi|195629462|gb|ACG36372.1| hypothetical

protein [Zea mays]

XP_002458638
242058984
hypothetical protein SORBIDRAFT_03g037170
0.948171

Sorghum bicolor

2691
4127

[Sorghum bicolor]

&gt:gi|241930613|gb|EES03758.1|

hypothetical protein SORBIDRAFT_03g037170

[Sorghum bicolor]

NP_001144570
226528574
hypothetical protein LOC100277579 [Zea mays]
0.838415

Zea mays

2692
4128

&gt:gi|195643964|gb|ACG41450.1| hypothetical

protein [Zea mays]

EAY76156
54362548
hypothetical protein OsI_04089
0.844512

Oryza sativa Indica Group
2693

[Oryza sativa Indica Group]

NP_001044532
115440504
Os01g0800300 [Oryza sativa Japonica Group]
0.844512

Oryza sativa Japonica Group
2694
4129

&gt:gi|19570984|dbj|BAB86411.1| unknown

protein [Oryza sativa Japonica Group]

&gt:gi|20804736|dbj|BAB92422.1| unknown

protein [Oryza sativa Japonica Group]

&gt:gi|113534063|dbj|BAF06446.1| Os01g0800300

[Oryza sativa Japonica Group]

&gt:gi|215704187|dbj|BAG93027.1| unnamed protein

product [Oryza sativa Japonica Group]

&gt:gi|215704815|dbj|BAG94843.1| unnamed protein

product [Oryza sativa Japonica Group]

&gt:gi|215704819|dbj|BAG94847.1| unnamed protein

product [Oryza sativa Japonica Group]

&gt:gi|215741020|dbj|BAG97515.1| unnamed protein

product [Oryza sativa Japonica Group]

BAK06822
326513163
predicted protein
0.783537

Hordeum vulgare subsp. vulgare
2695
4130

[Hordeum vulgare subsp. vulgare]

XP_002457313
242056334
hypothetical protein SORBIDRAFT_03g005440
0.759146

Sorghum bicolor

2696
4131

[Sorghum bicolor]

&gt:gi|241929288|gb|EES02433.1|

hypothetical protein SORBIDRAFT_03g005440

[Sorghum bicolor]

13-34
XP_002465221
242035652
hypothetical protein SORBIDRAFT_01g034400
1

Sorghum bicolor

2697
4132

[Sorghum bicolor]

&gt:gi|241919075|gb|EER92219.1|

hypothetical protein SORBIDRAFT_01g034400

[Sorghum bicolor]

ACF85210
194702251
unknown [Zea mays]
0.970696

Zea mays

2698
4133

&gt:gi|223942479|gb|ACN25323.1|

unknown [Zea mays]

NP_001050195
115453188
Os03g0369800 [Oryza sativa Japonica Group]
0.879121

Oryza sativa Japonica Group
2699
4134

&gt:gi|12039356|gb|AAG46143.1|AC082644_25

putative vesicle soluble NSF attachment protein

receptor [Oryza sativa Japonica Group]

&gt:gi|108708370|gb|ABF96165.1| Novel plant

SNARE 11, putative, expressed

[Oryza sativa Japonica Group]

&gt:gi|113548666|dbj|BAF12109.1|

Os03g0369800 [Oryza sativa Japonica Group]

&gt:gi|125586400|gb|EAZ27064.1| hypothetical

protein OsJ_10993 [Oryza sativa Japonica Group]

&gt:gi|215694052|dbj|BAG89251.1| unnamed protein

product [Oryza sativa Japonica Group]

EAY90177
54362548
hypothetical protein OsI_11742
0.879121

Oryza sativa Indica Group
2700

[Oryza sativa Indica Group]

AAU94636
53829386
SNARE 12 [Oryza sativa Japonica Group]
0.875458

Oryza sativa Japonica Group
2701
4135

EEE67665
54398660
hypothetical protein OsJ_25287
0.791209

Oryza sativa Japonica Group
2702

[Oryza sativa Japonica Group]

XP_002461096
242046449
hypothetical protein SORBIDRAFT_02g040620
0.802198

Sorghum bicolor

2703
4136

[Sorghum bicolor]

&gt:gi|241924473|gb|EER97617.1|

hypothetical protein SORBIDRAFT_02g040620

[Sorghum bicolor]

NP_001151516
226502489
novel plant SNARE 11 [Zea mays]
0.798535

Zea mays

2704
4137

&gt:gi|195647358|gb|ACG43147.1|

novel plant SNARE 11 [Zea mays]

&gt:gi|219887387|gb|ACL54068.1|

unknown [Zea mays]

NP_001060402
115473606
Os07g0637400 [Oryza sativa Japonica Group]
0.791209

Oryza sativa Japonica Group
2705
4138

&gt:gi|23237830|dbj|BAC16405.1| vesicle soluble

NSF attachment protein receptor-like

protein [Oryza sativa Japonica Group]

&gt:gi|113611938|dbj|BAF22316.1| Os07g0637400

[Oryza sativa Japonica Group]

&gt:gi|215695299|dbj|BAG90490.1| unnamed protein

product [Oryza sativa Japonica Group]

AAU94637
53829388
SNARE 13 [Oryza sativa Japonica Group]
0.791209

Oryza sativa Japonica Group
2706
4139

295-316
AAX11351
59895950
cathepsin B-like cysteine protease
1

Oryza sativa Japonica Group
2707
4140

[Oryza sativa Japonica Group]

&gt:gi|125551767|gb|EAY97476.1|

hypothetical protein OsI_19406

[Oryza sativa Indica Group]

&gt:gi|215694023|dbj|BAG89222.1| unnamed

protein product [Oryza sativa Japonica Group]

&gt:gi|215712372|dbj|BAG94499.1| unnamed

protein product [Oryza sativa Japonica Group]

&gt:gi|215765382|dbj|BAG87079.1| unnamed

protein product [Oryza sativa Japonica Group]

&gt:gi|222631058|gb|EEE63190.1| hypothetical

protein OsJ_17999 [Oryza sativa Japonica Group]

BAJ90198
326492683
predicted protein
0.726257

Hordeum vulgare subsp. vulgare
2708
4141

[Hordeum vulgare subsp. vulgare]

554-575
NP_001170197
293334350
hypothetical protein LOC100384147 [Zea mays]
1

Zea mays

2709
4142

&gt:gi|224034241|gb|ACN36196.1| unknown

[Zea mays]

526-547
NP_001106022
162461199
putative growth-regulating factor 3 [Zea mays]
1

Zea mays

2710
4143

&gt:gi|146008369|gb|ABQ01216.1| putative

growth-regulating factor 3 [Zea mays]

ACG42410
195645883
atGRF5 [Zea mays]
0.9825

Zea mays

2711
4144

XP_002454651
242066723
hypothetical protein SORBIDRAFT_04g034800
0.805

Sorghum bicolor

2712
4145

[Sorghum bicolor]

&gt:gi|241934482|gb|EES07627.1|

hypothetical protein SORBIDRAFT_04g034800

[Sorghum bicolor]

NP_001048288
115449016
Os02g0776900 [Oryza sativa Japonica Group]
0.725

Oryza sativa Japonica Group
2713
4146

&gt:gi|51039831|tpg|DAA05205.1| TPA_exp:

growth-regulating factor 1

[Oryza sativa (japonica cultivar-group)]

&gt:gi|113537819|dbj|BAF10202.1|

Os02g0776900 [Oryza sativa Japonica Group]

AAF17567
6573148
growth-regulating factor 1 [Oryza sativa]
0.7275

Oryza sativa

2714
4147

&gt:gi|125541338|gb|EAY87733.1| hypothetical

protein OsI_09149 [Oryza sativa Indica Group]

NP_001106027
162461967
putative growth-regulating factor 9 [Zea mays]
0.7125

Zea mays

2715
4148

&gt:gi|146008476|gb|ABQ01222.1| putative

growth-regulating factor 9 [Zea mays]

257-278
XP_002465189
242035588
hypothetical protein SORBIDRAFT_01g033670
1

Sorghum bicolor

2716
4149

[Sorghum bicolor]

&gt:gi|241919043|gb|EER92187.1|

hypothetical protein SORBIDRAFT_01g033670

[Sorghum bicolor]

Predicted
247-270
NP_001105185
162463524
sigma factor protein [Zea mays]
1

Zea mays

2717
4150

siRNA

&gt:gi|20159761|gb|AAM12034.1|

56658

sigma factor protein [Zea mays]

ACN32028
223975680
unknown [Zea mays]
0.924296

Zea mays

2718
4151

XP_002440362
242089058
hypothetical protein SORBIDRAFT_09g030350
0.727113

Sorghum bicolor

2719
4152

[Sorghum bicolor]

&gt:gi|241945647|gb|EES18792.1|

hypothetical protein SORBIDRAFT_09g030350

[Sorghum bicolor]

Predicted
170-191
NP_001147862
226497613
LOC100281472 [Zea mays]
1

Zea mays

2720
4153

siRNA

&gt:gi|195614188|gb|ACG28924.1|

56885

transparent testa 12 protein [Zea mays]

BAJ87592
326511155
predicted protein [Hordeum vulgare subsp. vulgare]
0.778468

Hordeum vulgare subsp. vulgare
2721
4154

&gt:gi|326521392|dbj|BAJ96899.1| predicted

protein [Hordeum vulgare subsp. vulgare]

483-504
XP_002467897
242041004
hypothetical protein SORBIDRAFT_01g036050
1

Sorghum bicolor

2722
4155

[Sorghum bicolor]

&gt:gi|241921751|gb|EER94895.1|

hypothetical protein SORBIDRAFT_01g036050

[Sorghum bicolor]

NP_001146010
226508499
hypothetical protein LOC100279541 [Zea mays]
0.945342

Zea mays

2723
4156

&gt:gi|219885317|gb|ACL53033.1|

unknown [Zea mays]

&gt:gi|223944401|gb|ACN26284.1|

unknown [Zea mays]

Q8VXB5

RecName: Full = Putative potassium transporter 8;
0.880745

Oryza sativa Japonica Group
2724

AltName: Full = OsHAK8

&gt:gi|108708033|gb|ABF95828.1|

Potassium transporter 2, putative, expressed

[Oryza sativa Japonica Group]

&gt:gi|125586181|gb|EAZ26845.1|

hypothetical protein OsJ_10761

[Oryza sativa Japonica Group]

EAY89924
54362548
hypothetical protein OsI_11472
0.879503

Oryza sativa Indica Group
2725

[Oryza sativa Indica Group]

NP_001060637
115474076
Os07g0679000 [Oryza sativa Japonica Group]
0.807453

Oryza sativa Japonica Group
2726
4157

&gt:gi|75232649|sp|Q7XIV8.1|HAK9_ORYSJ

RecName: Full = Probable potassium transporter 9;

AltName: Full = OsHAK9

&gt:gi|18250702|emb|CAD20999.1| putative potasium

transporter [Oryza sativa Japonica Group]

&gt:gi|33146437|dbj|BAC79545.1|

putative potassium transporter

[Oryza sativa Japonica Group]

&gt:gi|113612173|dbj|BAF2255.1| Os07g0679000

[Oryza sativa Japonica Group]

&gt:gi|125559610|gb|EAZ05146.1| hypothetical

protein OsI_27340 [Oryza sativa Indica Group]

BAE93160
91204711
potassium transporter [Phragmites australis]
0.804969

Phragmites australis

2727
4158

BAE93159
91204709
potassium transporter [Phragmites australis]
0.803727

Phragmites australis

2728
4159

BAE93158
91204707
potassium transporter [Phragmites australis]
0.807453

Phragmites australis

2729
4160

EAZ41092
54398660
hypothetical protein OsJ_25584
0.781366

Oryza sativa Japonica Group
2730

[Oryza sativa Japonica Group]

BAJ87873
326513707
predicted protein [Hordeum vulgare subsp. vulgare]
0.762733

Hordeum vulgare subsp. vulgare
2731
4161

&gt:gi|326525935|dbj|BAJ93144.1| predicted

protein [Hordeum vulgare subsp. vulgare]

378-399
XP_002438701
242096421
hypothetical protein SORBIDRAFT_10g024660
1

Sorghum bicolor

2732
4162

[Sorghum bicolor]

&gt:gi|241916924|gb|EER90068.1|

hypothetical protein SORBIDRAFT_10g024660

[Sorghum bicolor]

NP_001147472
226504515
potassium transporter 10 [Zea mays]
0.937805

Zea mays

2733
4163

&gt:gi|195611632|gb|ACG27646.1|

potassium transporter 10 [Zea mays]

BAK03495
326515163
predicted protein
0.831707

Hordeum vulgare subsp. vulgare
2734
4164

[Hordeum vulgare subsp. vulgare]

CAD21000
18250703
putative potasium transporter
0.820732

Oryza sativa Japonica Group
2735
4165

[Oryza sativa Japonica Group]

NP_001058116
115469033
Os06g0625900 [Oryza sativa Japonica Group]
0.828049

Oryza sativa Japonica Group
2736
4166

&gt:gi|62900352|sp|Q67VS5.1|HAK10_ORYSJ

RecName: Full = Potassium transporter 10;

AltName: Full = OsHAK10

&gt:gi|18250690|emb|CAD20993.1|

putative potasium transporter

[Oryza sativa Japonica Group]

&gt:gi|51535727|dbj|BAD37744.1|

putative potassium transporter KUP3p

[Oryza sativa Japonica Group]

&gt:gi|113596156|dbj|BAF20030.1|

Os06g0625900 [Oryza sativa Japonica Group]

CAN75895
123699834
hypothetical protein VITISV_038658
0.7

Vitis vinifera

2737

[Vitis vinifera]

402-423
XP_002463387
242051285
hypothetical protein SORBIDRAFT_02g042930
1

Sorghum bicolor

2738
4167

[Sorghum bicolor]

&gt:gi|241926764|gb|EER99908.1|

hypothetical protein SORBIDRAFT_02g042930

[Sorghum bicolor]

NP_001141423
226503931
hypothetical protein LOC100273533 [Zea mays]
0.934343

Zea mays

2739
4168

&gt:gi|194704534|gb|ACF86351.1|

unknown [Zea mays]

&gt:gi|223945057|gb|ACN26612.1|

unknown [Zea mays]

&gt:gi|223948037|gb|ACN28102.1|

unknown [Zea mays]

31-52
ABA95869
108862058
protein kinase family protein, putative, expressed
1

Oryza sativa Japonica Group
2740

[Oryza sativa Japonica Group]

&gt:gi|215769321|dbj|BAH01550.1| unnamed protein

product [Oryza sativa Japonica Group]

EEE52818
54398660
hypothetical protein OsJ_35327
0.956848

Oryza sativa Japonica Group
2741

[Oryza sativa Japonica Group]

EEC68910
54362548
hypothetical protein OsI_37582
0.840525

Oryza sativa Indica Group
2742

[Oryza sativa Indica Group]

NP_001151569
226498197
ATP binding protein [Zea mays]
0.840525

Zea mays

2743
4169

&gt:gi|195647818|gb|ACG43377.1|

ATP binding protein [Zea mays]

ACR35824
238009577
unknown [Zea mays]
0.838649

Zea mays

2744
4170

NP_001141661
239047296
hypothetical protein LOC100273787 [Zea mays]
0.836773

Zea mays

2745
4171

&gt:gi|238908867|gb|ACF86813.2|

unknown [Zea mays]

BAJ91271
326506063
predicted protein [Hordeum vulgare subsp. vulgare]
0.78424

Hordeum vulgare subsp. vulgare
2746
4172

BAJ88388
326522683
predicted protein [Hordeum vulgare subsp. vulgare]
0.78424

Hordeum vulgare subsp. vulgare
2747
4173

NP_001152374
226504771
ATP binding protein [Zea mays]
0.705441

Zea mays

2748
4174

&gt:gi|195655683|gb|ACG47309.1|

ATP binding protein [Zea mays]

XP_002449038
242067522
hypothetical protein SORBIDRAFT_05g003840
0.716698

Sorghum bicolor

2749
4175

[Sorghum bicolor]

&gt:gi|241934881|gb|EES08026.1|

hypothetical protein SORBIDRAFT_05g003840

[Sorghum bicolor]

819-840
EEE68876
54398660
hypothetical protein OsJ_27688
1

Oryza sativa Japonica Group
2750

[Oryza sativa Japonica Group]

EEC83753
54362548
hypothetical protein OsI_29621
0.997436

Oryza sativa Indica Group
2751

[Oryza sativa Indica Group]

132-153
XP_002441141
242090616
hypothetical protein SORBIDRAFT_09g021160
1

Sorghum bicolor

2752
4176

[Sorghum bicolor]

&gt:gi|241946426|gb|EES19571.1|

hypothetical protein SORBIDRAFT_09g021160

[Sorghum bicolor]

NP_001105120
162461887
potassium channel protein ZMK2 [Zea mays]
0.906921

Zea mays

2753
4177

&gt:gi|5830781|emb|CAB54856.1| potassium

channel protein ZMK2 [Zea mays]

NP_001147796
226503366
potassium channel AKT2/3 [Zea mays]
0.896181

Zea mays

2754
4178

&gt:gi|195613792|gb|ACG28726.1| potassium

channel AKT2/3 [Zea mays]

XP_002441145
242090624
hypothetical protein SORBIDRAFT_09g021210
0.872315

Sorghum bicolor

2755
4179

[Sorghum bicolor]

&gt:gi|241946430|gb|EES19575.1|

hypothetical protein SORBIDRAFT_09g021210

[Sorghum bicolor]

XP_002441143
242090620
hypothetical protein SORBIDRAFT_09g021190
0.874702

Sorghum bicolor

2756
4180

[Sorghum bicolor]

&gt:gi|241946428|gb|EES19573.1|

hypothetical protein SORBIDRAFT_09g021190

[Sorghum bicolor]

Q75HP9

RecName: Full = Potassium channel AKT2
0.791169

Oryza sativa Japonica Group
2757

&gt:gi|46391141|gb|AAS90668.1| putative potassium

channel protein [Oryza sativa Japonica Group]

&gt:gi|222631670|gb|EEE63802.1| hypothetical

protein OsJ_18626 [Oryza sativa Japonica Group]

EAY98139
54362548
hypothetical protein OsI_20054
0.791169

Oryza sativa Indica Group
2758

[Oryza sativa Indica Group]

ABE99811
93138732
inwardly rectifying potassium channel
0.74821

Hordeum vulgare

2759
4181

AKT2 [Hordeum vulgare]

&gt:gi|326499398|dbj|BAJ86010.1| predicted

protein [Hordeum vulgare subsp. vulgare]

BAJ86681
326507875
predicted protein
0.747017

Hordeum vulgare subsp. vulgare
2760
4182

[Hordeum vulgare subsp. vulgare]

BAJ96949
326523876
predicted protein
0.747017

Hordeum vulgare subsp. vulgare
2761
4183

[Hordeum vulgare subsp. vulgare]

1374-1395
NP_001062056
115476919
Os08g0480000 [Oryza sativa Japonica Group]
1

Oryza sativa Japonica Group
2762
4184

&gt:gi|42408579|dbj|BAD09756.1| putative ripening

regulated protein [Oryza sativa Japonica Group]

&gt:gi|113624025|dbj|BAF23970.1| Os08g0480000

[Oryza sativa Japonica Group]

&gt:gi|215695384|dbj|BAG90575.1| unnamed protein

product [Oryza sativa Japonica Group]

Predicted
213-230
ACR33787
237908822
cytochrome P450 monooxygenase [Zea mays]
1

Zea mays

2763
4185

siRNA

57689

XP_002456213
242054134
hypothetical protein SORBIDRAFT_03g032220
0.790262

Sorghum bicolor

2764
4186

[Sorghum bicolor]

&gt:gi|241928188|gb|EES01333.1|

hypothetical protein SORBIDRAFT_03g032220

[Sorghum bicolor]

EAY75509
54362548
hypothetical protein OsI_03409
0.70412

Oryza sativa Indica Group
2765

[Oryza sativa Indica Group]

NP_001172524
297720324
Os01g0701300 [Oryza sativa Japonica Group]
0.705993

Oryza sativa Japonica Group
2766
4187

&gt:gi|255673594|dbj|BAH91254.1| Os01g0701300

[Oryza sativa Japonica Group]

809-826
XP_002439318
242086970
hypothetical protein SORBIDRAFT_09g004290
1

Sorghum bicolor

2767
4188

[Sorghum bicolor]

&gt:gi|241944603|gb|EES17748.1|

hypothetical protein SORBIDRAFT_09g004290

[Sorghum bicolor]

NP_001132852
212721551
hypothetical protein LOC100194344 [Zea mays]
0.989362

Zea mays

2768
4189

&gt:gi|195606262|gb|ACG24961.1|

60S ribosomal protein L18 [Zea mays]

&gt:gi|195625914|gb|ACG34787.1|

60S ribosomal protein L18 [Zea mays]

&gt:gi|195640242|gb|ACG39589.1|

60S ribosomal protein L18 [Zea mays]

&gt:gi|238006204|gb|ACR34137.1| unknown

[Zea mays]

NP_001054688
115462176
Os05g0155100 [Oryza sativa Japonica Group]
0.968085

Oryza sativa Japonica Group
2769
4190

&gt:gi|54291850|gb|AAV32218.1|

cytoplasmic ribosomal protein L18

[Oryza sativa Japonica Group]

&gt:gi|113578239|dbj|BAF16602.1| Os05g0155100

[Oryza sativa Japonica Group]

&gt:gi|125550901|gb|EAY96610.1| hypothetical

protein OsI_18515 [Oryza sativa Indica Group]

&gt:gi|149392184|gb|ABR25945.1|

60S ribosomal protein 118

[Oryza sativa Indica Group]

&gt:gi|215692755|dbj|BAG88175.1| unnamed protein

product [Oryza sativa Japonica Group]

&gt:gi|215767982|dbj|BAH00211.1| unnamed protein

product [Oryza sativa Japonica Group]

&gt:gi|222630251|gb|EEE62383.1| hypothetical

protein OsJ_17172 [Oryza sativa Japonica Group]

BAJ90421
326494303
predicted protein
0.925532

Hordeum vulgare subsp. vulgare
2770
4191

[Hordeum vulgare subsp. vulgare]

&gt:gi|326527807|dbj|BAJ88976.1| predicted

protein [Hordeum vulgare subsp. vulgare]

3IZ5_R

Chain R, Localization Of The Large Subunit
0.920213

Triticum aestivum

2771

Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of

Triticum Aestivum Translating 80s Ribosome

&gt:gi|315113257|pdb|3IZR|R Chain R, Localization

Of The Large Subunit Ribosomal Proteins Into A 5.5

A Cryo-Em Map Of Triticum Aestivum Translating

80s Ribosome &gt:gi|57471708|gb|AAW50985.1|

ribosomal protein L18 [Triticum aestivum]

XP_002461201
242046909
hypothetical protein SORBIDRAFT_02g042750
0.93617

Sorghum bicolor

2772
4192

[Sorghum bicolor]

&gt:gi|241924578|gb|EER97722.1|

hypothetical protein SORBIDRAFT_02g042750

[Sorghum bicolor]

XP_002465302
242035814
hypothetical protein SORBIDRAFT_01g035860
0.941489

Sorghum bicolor

2773
4193

[Sorghum bicolor]

&gt:gi|241919156|gb|EER92300.1|

hypothetical protein SORBIDRAFT_01g035860

[Sorghum bicolor]

NP_001131538
212721317
hypothetical protein LOC100192878 [Zea mays]
0.93617

Zea mays

2774
4194

&gt:gi|195606022|gb|ACG24841.1|

60S ribosomal protein L18 [Zea mays]

&gt:gi|195620212|gb|ACG31936.1|

60S ribosomal protein L18 [Zea mays]

NP_001050069
115452936
Os03g0341100 [Oryza sativa Japonica Group]
0.909574

Oryza sativa Japonica Group
2775
4195

&gt:gi|108708066|gb|ABF95861.1|

60S ribosomal protein L18, putative, expressed

[Oryza sativa Japonica Group]

&gt:gi|113548540|dbj|BAF11983.1|

Os03g0341100 [Oryza sativa Japonica Group]

&gt:gi|218192805|gb|EEC75232.1| hypothetical

protein OsI_11506 [Oryza sativa Indica Group]

&gt:gi|222624903|gb|EEE59035.1| hypothetical

protein OsJ_10788 [Oryza sativa Japonica Group]

NP_001060617
115474036
Os07g0674700 [Oryza sativa Japonica Group]
0.898936

Oryza sativa Japonica Group
2776
4196

&gt:gi|34393858|dbj|BAC83538.1| putative

cytoplasmic ribosomal protein L18

[Oryza sativa Japonica Group]

&gt:gi|50509811|dbj|BAD31974.1|

putative cytoplasmic ribosomal protein L18

[Oryza sativa Japonica Group]

&gt:gi|113612153|dbj|BAF22531.1| Os07g0674700

[Oryza sativa Japonica Group]

&gt:gi|125559582|gb|EAZ05118.1| hypothetical

protein OsI_27311 [Oryza sativa Indica Group]

&gt:gi|215694724|dbj|BAG89915.1| unnamed protein

product [Oryza sativa Japonica Group]

&gt:gi|222637674|gb|EEE67806.1| hypothetical

protein OsJ_25556 [Oryza sativa Japonica Group]

562-579
XP_002445227
242080916
hypothetical protein SORBIDRAFT_07g006330
1

Sorghum bicolor

2777
4197

[Sorghum bicolor]

&gt:gi|241941577|gb|EES14722.1|

hypothetical protein SORBIDRAFT_07g006330

[Sorghum bicolor]

NP_001168868
293333741
hypothetical protein LOC100382673 [Zea mays]
0.920875

Zea mays

2778
4198

&gt:gi|223973427|gb|ACN30901.1| unknown

[Zea mays]

NP_001131176
212721253
hypothetical protein LOC100192484 [Zea mays]
0.914141

Zea mays

2779
4199

&gt:gi|194690786|gb|ACF79477.1| unknown

[Zea mays]

EEC83121
54362548
hypothetical protein OsI_28280
0.787879

Oryza sativa Indica Group
2780

[Oryza sativa Indica Group]

NP_001061275
115475356
Os08g0224200 [Oryza sativa Japonica Group]
0.786195

Oryza sativa Japonica Group
2781
4200

&gt:gi|38636667|dbj|BAD02987.1| putative

Rubisco subunit binding-protein beta subunit

[Oryza sativa Japonica Group]

&gt:gi|113623244|dbj|BAF23189.1|

Os08g0224200 [Oryza sativa Japonica Group]

&gt:gi|215715262|dbj|BAG95013.1| unnamed

protein product [Oryza sativa Japonica Group]

EEE68253
54398660
hypothetical protein OsJ_26460
0.740741

Oryza sativa Japonica Group
2782

[Oryza sativa Japonica Group]

544-561
ACF83391
194698613
unknown [Zea mays]
1

Zea mays

2783
4201

NP_001105647
162458977
LOC542653 [Zea mays]
0.993569

Zea mays

2784
4202

&gt:gi|28950670|gb|AAO63267.1|

legumin-like protein [Zea mays]

ACG36012
195628363
legumin-like protein [Zea mays]
0.987138

Zea mays

2785
4203

XP_002440480
242089294
hypothetical protein SORBIDRAFT_09g001680
0.874598

Sorghum bicolor

2786
4204

[Sorghum bicolor]

&gt:gi|241945765|gb|EES18910.1|

hypothetical protein SORBIDRAFT_09g001680

[Sorghum bicolor]

NP_001150066
226498887
legumin-like protein [Zea mays]
0.881029

Zea mays

2787
4205

&gt:gi|195607700|gb|ACG25680.1|

legumin-like protein [Zea mays]

&gt:gi|195636432|gb|ACG37684.1|

legumin-like protein [Zea mays]

&gt:gi|224033321|gb|ACN35736.1|

unknown [Zea mays]

NP_001105062
162459029
legumin-like protein [Zea mays]
0.893891

Zea mays

2788
4206

&gt:gi|28950668|gb|AAO63266.1|

legumin-like protein [Zea mays]

ACG36544
195629805
legumin-like protein [Zea mays]
0.890675

Zea mays

2789
4207

BAJ94492
326494745
predicted protein
0.85209

Hordeum vulgare subsp. vulgare
2790
4208

[Hordeum vulgare subsp. vulgare]

&gt:gi|326511543|dbj|BAJ91916.1| predicted

protein [Hordeum vulgare subsp. vulgare]

NP_001054469
115461738
Os05g0116000 [Oryza sativa Japonica Group]
0.784566

Oryza sativa Japonica Group
2791
4209

&gt:gi|52353520|gb|AAU44086.1| putative

legumin [Oryza sativa Japonica Group]

&gt:gi|55168333|gb|AAV44198.1| putative

legumin [Oryza sativa Japonica Group]

&gt:gi|113578020|dbj|BAF16383.1| Os05g0116000

[Oryza sativa Japonica Group]

&gt:gi|125550596|gb|EAY96305.1| hypothetical

protein OsI_18204 [Oryza sativa Indica Group]

&gt:gi|215764963|dbj|BAG86660.1| unnamed

protein product [Oryza sativa Japonica Group]

&gt:gi|215768422|dbj|BAH00651.1| unnamed

protein product [Oryza sativa Japonica Group]

EEE62108
54398660
hypothetical protein OsJ_16892
0.78135

Oryza sativa Japonica Group
2792

[Oryza sativa Japonica Group]

849-866
XP_002458930
242059568
hypothetical protein SORBIDRAFT_03g042880
1

Sorghum bicolor

2793
4210

[Sorghum bicolor]

&gt:gi|241930905|gb|EES04050.1|

hypothetical protein SORBIDRAFT_03g042880

[Sorghum bicolor]

NP_001169575
293331910
hypothetical protein LOC100383455 [Zea mays]
0.900249

Zea mays

2794
4211

&gt:gi|224030179|gb|ACN34165.1| unknown

[Zea mays]

EEC71972
54362548
hypothetical protein OsI_04809
0.869077

Oryza sativa Indica Group
2795

[Oryza sativa Indica Group]

NP_001045108
115441656
Os01g0901000 [Oryza sativa Japonica Group]
0.86409

Oryza sativa Japonica Group
2796
4212

&gt:gi|56784865|dbj|BAD82105.1| putative

bg55 [Oryza sativa Japonica Group]

&gt:gi|113534639|dbj|BAF07022.1| Os01g0901000

[Oryza sativa Japonica Group]

&gt:gi|215715204|dbj|BAG94955.1| unnamed

protein product [Oryza sativa Japonica Group]

BAB90523
20161598
B1065G12.5 [Oryza sativa Japonica Group]
0.814214

Oryza sativa Japonica Group
2797
4213

BAK03281
326512747
predicted protein
0.837905

Hordeum vulgare subsp. vulgare
2798
4214

[Hordeum vulgare subsp. vulgare]

EEE55827
54398660
hypothetical protein OsJ_04433
0.820449

Oryza sativa Japonica Group
2799

[Oryza sativa Japonica Group]

1153-1170
NP_001151583
226492901
WRKY74 - superfamily of TFs having WRKY and
1

Zea mays

2800
4215

zinc finger domains [Zea mays]

&gt:gi|195647918|gb|ACG43427.1| WRKY74 -

superfamily of TFs having WRKY and zinc

finger domains [Zea mays]

XP_002460068
242044393
hypothetical protein SORBIDRAFT_02g022280
0.774834

Sorghum bicolor

2801
4216

[Sorghum bicolor]

&gt:gi|241923445|gb|EER96589.1|

hypothetical protein SORBIDRAFT_02g022280

[Sorghum bicolor]

Predicted
822-839
XP_002455452
242052612
hypothetical protein SORBIDRAFT_03g011010
1

Sorghum bicolor

2802
4217

siRNA

[Sorghum bicolor]

58108

&gt:gi|63087720|emb|CAI93175.1|

glycosyltransferase [Sorghum bicolor]

&gt:gi|241927427|gb|EES00572.1| hypothetical

protein SORBIDRAFT_03g011010

[Sorghum bicolor]

NP_001105783
162459421
glycosyltransferase [Zea mays]
0.876471

Zea mays

2803
4218

&gt:gi|63087722|emb|CAI93176.1|

glycosyltransferase [Zea mays]

285-302
NP_001132904
212723947
hypothetical protein LOC100194403 [Zea mays]
1

Zea mays

2804
4219

&gt:gi|194695716|gb|ACF81942.1| unknown

[Zea mays]

AEF30550
333385002
serine/threonine protein kinase Stpk-B
0.77037

Triticum aestivum

2805
4220

[Triticum aestivum]

AEF30549
333385000
serine/threonine protein kinase Stpk-D
0.762963

Triticum aestivum

2806
4221

[Triticum aestivum]

BAJ93188
326526022
predicted protein
0.762963

Hordeum vulgare subsp. vulgare
2807
4222

[Hordeum vulgare subsp. vulgare]

AEF30546
333384994
serine/threonine protein kinase Stpk-V
0.760494

Dasypyrum villosum

2808
4223

[Dasypyrum villosum]

&gt:gi|333384997|gb|AEF30547.1|

serine/threonine protein kinase Stpk-V

[Dasypyrum villosum]

AEF30548
333384998
serine/threonine protein kinase Stpk-A
0.760494

Triticum aestivum

2809
4224

[Triticum aestivum]

NP_001045995
115444430
Os02g0165100 [Oryza sativa Japonica Group]
0.745679

Oryza sativa Japonica Group
2810
4225

&gt:gi|49388058|dbj|BAD25172.1| putative receptor

protein kinase PERK [Oryza sativa Japonica Group]

&gt:gi|49388415|dbj|BAD25548.1| putative receptor

protein kinase PERK [Oryza sativa Japonica Group]

&gt:gi|113535526|dbj|BAF07909.1| Os02g0165100

[Oryza sativa Japonica Group]

&gt:gi|215694876|dbj|BAG90067.1| unnamed

protein product [Oryza sativa Japonica Group]

EEE56371
54398660
hypothetical protein OsJ_05508
0.74321

Oryza sativa Japonica Group
2811

[Oryza sativa Japonica Group]

677-694
EEE56138
54398660
hypothetical protein OsJ_05018
1

Oryza sativa Japonica Group
2812

[Oryza sativa Japonica Group]

NP_001045614
115443668
Os02g0104700 [Oryza sativa Japonica Group]
0.98829

Oryza sativa Japonica Group
2813
4226

&gt:gi|75131025|sp|Q6YPG5.1|NOS_ORYSJ

RecName: Full = Putative nitric oxide synthase

&gt:gi|40363768|dbj|BAD06278.1| putative

GTPase [Oryza sativa Japonica Group]

&gt:gi|41052546|dbj|BAD07538.1| putative

GTPase [Oryza sativa Japonica Group]

&gt:gi|113535145|dbj|BAF07528.1| Os02g0104700

[Oryza sativa Japonica Group]

EAY84101
54362548
hypothetical protein OsI_05484
0.985948

Oryza sativa Indica Group
2814

[Oryza sativa Indica Group]

NP_001168044
293331104
hypothetical protein LOC100381773 [Zea mays]
0.894614

Zea mays

2815
4227

&gt:gi|223945667|gb|ACN26917.1| unknown

[Zea mays]

ADK47527
301015572
NOA1/RIF1 protein [Medicago truncatula]
0.730679

Medicago truncatula

2816
4228

640-657
XP_002446751
242073629
hypothetical protein SORBIDRAFT_06g021760
1

Sorghum bicolor

2817
4229

[Sorghum bicolor]

&gt:gi|241937934|gb|EES11079.1|

hypothetical protein SORBIDRAFT_06g021760

[Sorghum bicolor]

NP_001053236
115459271
Os04g0502800 [Oryza sativa Japonica Group]
0.883362

Oryza sativa Japonica Group
2818
4230

&gt:gi|113564807|dbj|BAF15150.1| Os04g0502800

[Oryza sativa Japonica Group]

BAK00120
326519493
predicted protein
0.866209

Hordeum vulgare subsp. vulgare
2819
4231

[Hordeum vulgare subsp. vulgare]

EEE61279
54398660
hypothetical protein OsJ_15362
0.881647

Oryza sativa Japonica Group
2820

[Oryza sativa Japonica Group]

CAE02931
70663914
OSJNBa0014K14.3
0.881647

Oryza sativa Japonica Group
2821
4232

[Oryza sativa Japonica Group]

CAH67585
116310792
OSIGBa0112M24.2
0.883362

Oryza sativa Indica Group
2822
4233

[Oryza sativa Indica Group]

EEC77582
54362548
hypothetical protein OsI_16534
0.883362

Oryza sativa Indica Group
2823

[Oryza sativa Indica Group]

NP_001168646
293332436
hypothetical protein LOC100382433 [Zea mays]
0.70669

Zea mays

2824
4234

&gt:gi|223949891|gb|ACN29029.1| unknown

[Zea mays]

927-944
XP_002451348
242060117
hypothetical protein SORBIDRAFT_04g000530
1

Sorghum bicolor

2825
4235

[Sorghum bicolor]

&gt:gi|241931179|gb|EES04324.1|

hypothetical protein SORBIDRAFT_04g000530

[Sorghum bicolor]

BAK03882
326519914
predicted protein
0.838828

Hordeum vulgare subsp. vulgare
2826
4236

[Hordeum vulgare subsp. vulgare]

1528-1545
NP_001143089
226498753
hypothetical protein LOC100275564 [Zea mays]
1

Zea mays

2827
4237

&gt:gi|195614134|gb|ACG28897.1| hypothetical

protein [Zea mays]

XP_002453857
242065135
hypothetical protein SORBIDRAFT_04g019720
0.866758

Sorghum bicolor

2828
4238

[Sorghum bicolor]

&gt:gi|241933688|gb|EES06833.1|

hypothetical protein SORBIDRAFT_04g019720

[Sorghum bicolor]

EAY74088
54362548
hypothetical protein OsI_01975
0.739011

Oryza sativa Indica Group
2829

[Oryza sativa Indica Group]

BAB61143
14587202
unknown protein [Oryza sativa Japonica Group]
0.737637

Oryza sativa Japonica Group
2830
4239

&gt:gi|15408639|dbj|BAB64056.1| unknown protein

[Oryza sativa Japonica Group]

&gt:gi|125570433|gb|EAZ11948.1| hypothetical

protein OsJ_01821 [Oryza sativa Japonica Group]

&gt:gi|215741489|dbj|BAG97984.1| unnamed protein

product [Oryza sativa Japonica Group]

Predicted
1481-1501
ACL53547
219886344
unknown [Zea mays]
1

Zea mays

2831
4240

siRNA

58158

ACL54434
219888118
unknown [Zea mays]
0.964789

Zea mays

2832
4241

ACF88046
194707923
unknown [Zea mays]
0.964789

Zea mays

2833
4242

ACG44902
195650868
ureide permease 2 [Zea mays]
0.960094

Zea mays

2834
4243

NP_001066832
115488689
Os12g0502800 [Oryza sativa Japonica Group]
0.852113

Oryza sativa Japonica Group
2835
4244

&gt:gi|77555848|gb|ABA98644.1| Ureide permease 2,

putative, expressed [Oryza sativa Japonica Group]

&gt:gi|113649339|dbj|BAF29851.1| Os12g0502800

[Oryza sativa Japonica Group]

&gt:gi|215707179|dbj|BAG93639.1| unnamed protein

product [Oryza sativa Japonica Group]

&gt:gi|215741152|dbj|BAG97647.1| unnamed protein

product [Oryza sativa Japonica Group]

ABA98643
108862058
Ureide permease 2, putative, expressed
0.852113

Oryza sativa Japonica Group
2836

[Oryza sativa Japonica Group]

&gt:gi|218186904|gb|EEC69331.1|

hypothetical protein OsI_38433

[Oryza sativa Indica Group]

&gt:gi|222617132|gb|EEE53264.1|

hypothetical protein OsJ_36199

[Oryza sativa Japonica Group]

BAK08299
326530038
predicted protein
0.826291

Hordeum vulgare subsp. vulgare
2837
4245

[Hordeum vulgare subsp. vulgare]

NP_001183878
308081201
hypothetical protein LOC100502471 [Zea mays]
0.873239

Zea mays

2838
4246

&gt:gi|238015200|gb|ACR38635.1| unknown

[Zea mays]

ACF22675
193848478
ureide permease 2-like protein 2
0.701878

Brachypodium distachyon

2839

[Brachypodium distachyon]

113-133
XP_002463060
242050631
hypothetical protein SORBIDRAFT_02g036920
1

Sorghum bicolor

2840
4247

[Sorghum bicolor]

&gt:gi|241926437|gb|EER99581.1|

hypothetical protein SORBIDRAFT_02g036920

[Sorghum bicolor]

NP_001168223
293336038
hypothetical protein LOC100381982 [Zea mays]
0.94206

Zea mays

2841
4248

&gt:gi|223946819|gb|ACN27493.1| unknown

[Zea mays]

EEC82301
54362548
hypothetical protein OsI_26552
0.76824

Oryza sativa Indica Group
2842

[Oryza sativa Indica Group]

NP_001060053
115472908
Os07g0571700 [Oryza sativa Japonica Group]
0.76824

Oryza sativa Japonica Group
2843
4249

&gt:gi|34394216|dbj|BAC84668.1| putative organic

cation transporter [Oryza sativa Japonica Group]

&gt:gi|113611589|dbj|BAF21967.1| Os07g0571700

[Oryza sativa Japonica Group]

1396-1416
XP_002460562
242045381
hypothetical protein SORBIDRAFT_02g030730
1

Sorghum bicolor

2844
4250

[Sorghum bicolor]

&gt:gi|241923939|gb|EER97083.1|

hypothetical protein SORBIDRAFT_02g030730

[Sorghum bicolor]

XP_002460563
242045383
hypothetical protein SORBIDRAFT_02g030740
0.893069

Sorghum bicolor

2845
4251

[Sorghum bicolor]

&gt:gi|241923940|gb|EER97084.1|

hypothetical protein SORBIDRAFT_02g030740

[Sorghum bicolor]

NP_001168434
293334700
hypothetical protein LOC100382204 [Zea mays]
0.881188

Zea mays

2846
4252

&gt:gi|223948277|gb|ACN28222.1| unknown

[Zea mays]

XP_002460167
242044591
hypothetical protein SORBIDRAFT_02g023770
0.875248

Sorghum bicolor

2847
4253

[Sorghum bicolor]

&gt:gi|241923544|gb|EER96688.1|

hypothetical protein SORBIDRAFT_02g023770

[Sorghum bicolor]

XP_002460561
242045379
hypothetical protein SORBIDRAFT_02g030720
0.786139

Sorghum bicolor

2848
4254

[Sorghum bicolor]

&gt:gi|241923938|gb|EER97082.1|

hypothetical protein SORBIDRAFT_02g030720

[Sorghum bicolor]

1610-1630
ACN31936
223975496
unknown [Zea mays]
1

Zea mays

2849
4255

1382-1402
NP_001183878
308081201
hypothetical protein LOC100502471 [Zea mays]
1

Zea mays

2850
4256

&gt:gi|238015200|gb|ACR38635.1| unknown

[Zea mays]

479-499
XP_002460117
242044491
hypothetical protein SORBIDRAFT_02g023000
1

Sorghum bicolor

2851
4257

[Sorghum bicolor]

&gt:gi|241923494|gb|EER96638.1|

hypothetical protein SORBIDRAFT_02g023000

[Sorghum bicolor]

ACR37870
238013669
unknown [Zea mays]
0.946809

Zea mays

2852
4258

NP_001143802
226505329
hypothetical protein LOC100276574 [Zea mays]
0.93883

Zea mays

2853
4259

&gt:gi|195627382|gb|ACG35521.1| hypothetical

protein [Zea mays]

BAD23415
48716714
hydrolase-like protein [Oryza sativa Japonica Group]
0.702128

Oryza sativa Japonica Group
2854
4260

&gt:gi|50726197|dbj|BAD33716.1| hydrolase-like

protein [Oryza sativa Japonica Group]

BAJ92435
326516559
predicted protein
0.744681

Hordeum vulgare subsp. vulgare
2855
4261

[Hordeum vulgare subsp. vulgare]

EEC84446
54362548
hypothetical protein OsI_31065
0.742021

Oryza sativa Indica Group
2856

[Oryza sativa Indica Group]

&gt:gi|222641433|gb|EEE69565.1|

hypothetical protein OsJ_29077

[Oryza sativa Japonica Group]

577-597
XP_002456713
242055134
hypothetical protein SORBIDRAFT_03g041220
1

Sorghum bicolor

2857
4262

[Sorghum bicolor]

&gt:gi|241928688|gb|EES01833.1|

hypothetical protein SORBIDRAFT_03g041220

[Sorghum bicolor]

NP_001147599
226506121
POT family protein [Zea mays]
0.790353

Zea mays

2858
4263

&gt:gi|195612430|gb|ACG28045.1| POT

family protein [Zea mays]

Predicted
1081-1100
ACR37939
238013807
unknown [Zea mays]
1

Zea mays

2859
4264

siRNA

58740

NP_001150768
226495128
LOC100284401 [Zea mays]
0.996764

Zea mays

2860
4265

&gt:gi|195641698|gb|ACG40317.1|

ubiquitinating enzyme [Zea mays]

NP_001049901
115452600
Os03g0308000 [Oryza sativa Japonica Group]
0.76699

Oryza sativa Japonica Group
2861
4266

&gt:gi|108707750|gb|ABF95545.1|

ubiquitinating enzyme, putative, expressed

[Oryza sativa Japonica Group]

&gt:gi|113548372|dbj|BAF11815.1|

Os03g0308000 [Oryza sativa Japonica Group]

&gt:gi|215713428|dbj|BAG94565.1| unnamed

protein product [Oryza sativa Japonica Group]

EEC75094
54362548
hypothetical protein OsI_11252
0.760518

Oryza sativa Indica Group
2862

[Oryza sativa Indica Group]

BAJ86904
326509022
predicted protein
0.760518

Hordeum vulgare subsp. vulgare
2863
4267

[Hordeum vulgare subsp. vulgare]

EEE58922
54398660
hypothetical protein OsJ_10572
0.737864

Oryza sativa Japonica Group
2864

[Oryza sativa Japonica Group]

Predicted
410-428
NP_001169291
293331114
hypothetical protein LOC100383155 [Zea mays]
1

Zea mays

2865
4268

siRNA

&gt:gi|224028455|gb|ACN33303.1| unknown

59056

[Zea mays]

211-229
NP_001052652
115458103
Os04g0394200 [Oryza sativa Japonica Group]
1

Oryza sativa Japonica Group
2866
4269

&gt:gi|21740743|emb|CAD40552.1|

OSJNBa0072K14.5 [Oryza sativa Japonica Group]

&gt:gi|113564223|dbj|BAF14566.1| Os04g0394200

[Oryza sativa Japonica Group]

&gt:gi|116309381|emb|CAH66460.1| H0718E12.4

[Oryza sativa Indica Group]

&gt:gi|125590215|gb|EAZ30565.1| hypothetical

protein OsJ_14615 [Oryza sativa Japonica Group]

&gt:gi|215768038|dbj|BAH00267.1| unnamed

protein product [Oryza sativa Japonica Group]

ACG35848
195628035
dihydrolipoyllysine-residue succinyltransferase
0.884091

Zea mays

2867
4270

component of 2-oxoglutarate dehydrogenase complex

[Zea mays]

NP_001147014
226509379
dihydrolipoyllysine-residue succinyltransferase
0.881818

Zea mays

2868
4271

component of 2-oxoglutarate dehydrogenase complex

[Zea mays]

&gt:gi|195606476|gb|ACG25068.1|

dihydrolipoyllysine-residue succinyltransferase

component of 2-oxoglutarate dehydrogenase complex

[Zea mays]

ACR38672
238015273
unknown [Zea mays]
0.827273

Zea mays

2869
4272

BAJ96018
326512073
predicted protein
0.813636

Hordeum vulgare subsp. vulgare
2870
4273

[Hordeum vulgare subsp. vulgare]

BAD22992
48716367
putative 2-oxoglutarate dehydrogenase E2
0.734091

Oryza sativa Japonica Group
2871
4274

subunit [Oryza sativa Japonica Group]

28-Oct
NP_001045255
115441950
Os01g0925300 [Oryza sativa Japonica Group]
1

Oryza sativa Japonica Group
2872
4275

&gt:gi|57899394|dbj|BAD88041.1| putative

zisp [Oryza sativa Japonica Group]

&gt:gi|57900122|dbj|BAD88184.1| putative

zisp [Oryza sativa Japonica Group]

&gt:gi|113534786|dbj|BAF07169.1| Os01g0925300

[Oryza sativa Japonica Group]

EAZ14683
54398660
hypothetical protein OsJ_04607
0.961259

Oryza sativa Japonica Group
2873

[Oryza sativa Japonica Group]

BAB89658
20160711
P0482D04.5 [Oryza sativa Japonica Group]
0.949153

Oryza sativa Japonica Group
2874
4276

EEC72069
54362548
hypothetical protein OsI_05001
0.932203

Oryza sativa Indica Group
2875

[Oryza sativa Indica Group]

NP_001130802
212274974
hypothetical protein LOC100191906 [Zea mays]
0.849879

Zea mays

2876
4277

&gt:gi|194690056|gb|ACF79112.1| unknown

[Zea mays]

&gt:gi|194690150|gb|ACF79159.1|

unknown [Zea mays]

&gt:gi|195635627|gb|ACG37282.1|

palmitoyltransferase ZDHHC9 [Zea mays]

&gt:gi|224030505|gb|ACN34328.1| unknown

[Zea mays]

BAK03564
326515301
predicted protein
0.8523

Hordeum vulgare subsp. vulgare
2877
4278

[Hordeum vulgare subsp. vulgare]

XP_002459011
242059730
hypothetical protein SORBIDRAFT_03g044420
0.769976

Sorghum bicolor

2878
4279

[Sorghum bicolor]

&gt:gi|241930986|gb|EES04131.1|

hypothetical protein SORBIDRAFT_03g044420

[Sorghum bicolor]

137-155
NP_001056918
115466637
Os06g0167100 [Oryza sativa Japonica Group]
1

Oryza sativa Japonica Group
2879
4280

&gt:gi|55296045|dbj|BAD67607.1| putative

gamma-adaptin 1 [Oryza sativa Japonica Group]

&gt:gi|113594958|dbj|BAF18832.1| Os06g0167100

[Oryza sativa Japonica Group]

&gt:gi|215678749|dbj|BAG95186.1| unnamed protein

product [Oryza sativa Japonica Group]

&gt:gi|222635027|gb|EEE65159.1| hypothetical

protein OsJ_20260 [Oryza sativa Japonica Group]

EEC80086
54362548
hypothetical protein OsI_21821
0.95977

Oryza sativa Indica Group
2880

[Oryza sativa Indica Group]

BAK00520
326524272
predicted protein
0.889655

Hordeum vulgare subsp. vulgare
2881
4281

[Hordeum vulgare subsp. vulgare]

ACG28758
195613855
AP-1 complex subunit gamma-1 [Zea mays]
0.894253

Zea mays

2882
4282

XP_002454734
242066889
hypothetical protein SORBIDRAFT_04g036416
0.821839

Sorghum bicolor

2883
4283

[Sorghum bicolor]

&gt:gi|241934565|gb|EES07710.1|

hypothetical protein SORBIDRAFT_04g036416

[Sorghum bicolor]

EEC74194
54362548
hypothetical protein OsI_09342
0.825287

Oryza sativa Indica Group
2884

[Oryza sativa Indica Group]

XP_002521026
255560014
AP-1 complex subunit gamma-2, putative
0.733333

Ricinus communis

2885
4284

[Ricinus communis]

&gt:gi|223539863|gb|EEF41443.1|

AP-1 complex subunit gamma-2, putative

[Ricinus communis]

XP_002265190
225424712
PREDICTED: hypothetical protein [Vitis vinifera]
0.732184

Vitis vinifera

2886
4285

&gt:gi|296086533|emb|CBI32122.3| unnamed protein

product [Vitis vinifera]

431-449
XP_002456313
242054334
hypothetical protein SORBIDRAFT_03g033840
1

Sorghum bicolor

2887
4286

[Sorghum bicolor]

&gt:gi|241928288|gb|EES01433.1|

hypothetical protein SORBIDRAFT_03g033840

[Sorghum bicolor]

NP_001168082
293331612
hypothetical protein LOC100381816 [Zea mays]
0.89852

Zea mays

2888
4287

&gt:gi|223945895|gb|ACN27031.1| unknown

[Zea mays]

XP_002458462
242058632
hypothetical protein SORBIDRAFT_03g034130
0.701903

Sorghum bicolor

2889
4288

[Sorghum bicolor]

&gt:gi|241930437|gb|EES03582.1|

hypothetical protein SORBIDRAFT_03g034130

[Sorghum bicolor]

84-102
ACN30664
223972952
unknown [Zea mays]
1

Zea mays

2890
4289

626-644
NP_001150636
226532023
dihydrolipoyllysine-residue succinyltransferase
1

Zea mays

2891
4290

component of 2-oxoglutarate dehydrogenase complex

[Zea mays]

&gt:gi|195640766|gb|ACG39851.1|

dihydrolipoyllysine-residue succinyltransferase

component of 2-oxoglutarate dehydrogenase

complex [Zea mays]

235-253
XP_002447329
242074785
hypothetical protein SORBIDRAFT_06g033040
1

Sorghum bicolor

2892
4291

[Sorghum bicolor]

&gt:gi|241938512|gb|EES11657.1|

hypothetical protein SORBIDRAFT_06g033040

[Sorghum bicolor]

ACN26581
223944994
unknown [Zea mays]
0.912548

Zea mays

2893
4292

XP_002448044
242076215
hypothetical protein SORBIDRAFT_06g020130
0.901141

Sorghum bicolor

2894
4293

[Sorghum bicolor]

&gt:gi|241939227|gb|EES12372.1|

hypothetical protein SORBIDRAFT_06g020130

[Sorghum bicolor]

ADT92202
315259985
N-acetylglucosaminyl-phosphatidylinositol
0.912548

Zea mays

2895
4294

de-N-acetylase-like protein [Zea mays]

BAJ97962
326488700
predicted protein
0.802281

Hordeum vulgare subsp. vulgare
2896
4295

[Hordeum vulgare subsp. vulgare]

EEC78258
54362548
hypothetical protein OsI_17935
0.787072

Oryza sativa Indica Group
2897

[Oryza sativa Indica Group]

NP_001054275
115461349
Os04g0678800 [Oryza sativa Japonica Group]
0.78327

Oryza sativa Japonica Group
2898
4296

&gt:gi|32487388|emb|CAE05722.1|

OSJNBb0017I01.2 [Oryza sativa Japonica Group]

&gt:gi|113565846|dbj|BAF16189.1| Os04g0678800

[Oryza sativa Japonica Group]

&gt:gi|215701450|dbj|BAG92874.1| unnamed

protein product [Oryza sativa Japonica Group]

&gt:gi|215704470|dbj|BAG93904.1| unnamed

protein product [Oryza sativa Japonica Group]

&gt:gi|222629778|gb|EEE61910.1| hypothetical

protein OsJ_16635 [Oryza sativa Japonica Group]

535-553
ACF85503
194702837
unknown [Zea mays]
1

Zea mays

2899
4297

&gt:gi|223949391|gb|ACN28779.1| unknown

[Zea mays]

NP_001149059
226497141
LOC100282679 [Zea mays]
0.948718

Zea mays

2900
4298

&gt:gi|195624404|gb|ACG34032.1|

chaperone protein dnaJ [Zea mays]

ACF86076
194703983
unknown [Zea mays]
0.95338

Zea mays

2901
4299

XP_002437726
242094471
hypothetical protein SORBIDRAFT_10g001410
0.909091

Sorghum bicolor

2902
4300

[Sorghum bicolor]

&gt:gi|241915949|gb|EER89093.1|

hypothetical protein SORBIDRAFT_10g001410

[Sorghum bicolor]

NP_001056623
115466047
Os06g0116800 [Oryza sativa Japonica Group]
0.778555

Oryza sativa Japonica Group
2903
4301

&gt:gi|55296201|dbj|BAD67919.1| putative

GFA2 [Oryza sativa Japonica Group]

&gt:gi|113594663|dbj|BAF18537.1| Os06g0116800

[Oryza sativa Japonica Group]

&gt:gi|215765163|dbj|BAG86860.1| unnamed

protein product [Oryza sativa Japonica Group]

&gt:gi|218197458|gb|EEC79885.1| hypothetical

protein OsI_21393 [Oryza sativa Indica Group]

&gt:gi|222637666|gb|EEE67798.1| hypothetical

protein OsJ_25536 [Oryza sativa Japonica Group]

275-293
XP_002437665
242094349
hypothetical protein SORBIDRAFT_10g000420
1

Sorghum bicolor

2904
4302

[Sorghum bicolor]

&gt:gi|241915888|gb|EER89032.1|

hypothetical protein SORBIDRAFT_10g000420

[Sorghum bicolor]

ACN30602
223972828
unknown [Zea mays]
0.838323

Zea mays

2905
4303

NP_001150955
226491174
glutamine cyclotransferase [Zea mays]
0.835329

Zea mays

2906
4304

&gt:gi|195643198|gb|ACG41067.1| glutamine

cyclotransferase precursor [Zea mays]

NP_001056544
115465889
Os06g0103700 [Oryza sativa Japonica Group]
0.736527

Oryza sativa Japonica Group
2907
4305

&gt:gi|55296762|dbj|BAD67954.1| putative

glutamine cyclotransferase precursor

[Oryza sativa Japonica Group]

&gt:gi|113594584|dbj|BAF18458.1|

Os06g0103700 [Oryza sativa Japonica Group]

&gt:gi|215687230|dbj|BAG91795.1| unnamed

protein product [Oryza sativa Japonica Group]

103-121
ACL52777
219884804
unknown [Zea mays]
1

Zea mays

2908
4306

XP_002453425
242064271
hypothetical protein SORBIDRAFT_04g005820
0.819588

Sorghum bicolor

2909
4307

[Sorghum bicolor]

&gt:gi|241933256|gb|EES06401.1|

hypothetical protein SORBIDRAFT_04g005820

[Sorghum bicolor]

315-333
NP_001150068
226506409
N-acetylglucosaminyl-phosphatidylinositol
1

Zea mays

2910
4308

de-N-acetylase [Zea mays]

&gt:gi|195636450|gb|ACG37693.1|

N-acetylglucosaminyl-phosphatidylinositol

de-N-acetylase [Zea mays]

329-347
NP_001140626
226493992
hypothetical protein LOC100272700 [Zea mays]
1

Zea mays

2911
4309

&gt:gi|194700230|gb|ACF84199.1| unknown

[Zea mays]

315-333
XP_002448044
242076215
hypothetical protein SORBIDRAFT_06g020130
1

Sorghum bicolor

2912
4310

[Sorghum bicolor]

&gt:gi|241939227|gb|EES12372.1|

hypothetical protein SORBIDRAFT_06g020130

[Sorghum bicolor]

1361-1379
ADT92191
315259978
putative potassium efflux system
1

Zea mays

2913

protein family [Zea mays]

ADT92192
315259985
putative potassium efflux system
0.990308

Zea mays

2914

family protein [Zea mays]

XP_002448794
242077715
hypothetical protein SORBIDRAFT_06g033310
0.881938

Sorghum bicolor

2915
4311

[Sorghum bicolor]

&gt:gi|241939977|gb|EES13122.1|

hypothetical protein SORBIDRAFT_06g033310

[Sorghum bicolor]

NP_001054299
115461397
Os04g0682800 [Oryza sativa Japonica Group]
0.807048

Oryza sativa Japonica Group
2916
4312

&gt:gi|38345563|emb|CAE03437.2|

OSJNBa0032F06.20 [Oryza sativa Japonica Group]

&gt:gi|113565870|dbj|BAF16213.1| Os04g0682800

[Oryza sativa Japonica Group]

&gt:gi|215768459|dbj|BAH00688.1| unnamed

protein product [Oryza sativa Japonica Group]

BAJ87826
326513613
predicted protein
0.769163

Hordeum vulgare subsp. vulgare
2917
4313

[Hordeum vulgare subsp. vulgare]

BAJ89683
326487397
predicted protein
0.768282

Hordeum vulgare subsp. vulgare
2918
4314

[Hordeum vulgare subsp. vulgare]

38-56
XP_002436836
242092691
hypothetical protein SORBIDRAFT_10g009750
1

Sorghum bicolor

2919
4315

[Sorghum bicolor]

&gt:gi|241915059|gb|EER88203.1|

hypothetical protein SORBIDRAFT_10g009750

[Sorghum bicolor]

81-99
NP_001143033
226529719
hypothetical protein LOC100275501 [Zea mays]
1

Zea mays

2920
4316

&gt:gi|195613282|gb|ACG28471.1| hypothetical

protein [Zea mays]

2226-2244
NP_001142912
226498003
hypothetical protein LOC100275344 [Zea mays]
1

Zea mays

2921
4317

&gt:gi|195611342|gb|ACG27501.1| hypothetical

protein [Zea mays]

XP_002452898
242063217
hypothetical protein SORBIDRAFT_04g034580
0.941261

Sorghum bicolor

2922
4318

[Sorghum bicolor]

&gt:gi|241932729|gb|EES05874.1|

hypothetical protein SORBIDRAFT_04g034580

[Sorghum bicolor]

BAK07849
326525157
predicted protein
0.84384

Hordeum vulgare subsp. vulgare
2923
4319

[Hordeum vulgare subsp. vulgare]

Q69T58

RecName: Full = Homeobox-leucine zipper protein
0.808023

Oryza sativa Japonica Group
2924

ROC8; AltName: Full = GLABRA 2-like homeobox

protein 8; AltName: Full = HD-ZIP protein ROC8;

AltName: Full = Homeodomain transcription factor

ROC8; AltName: Full = Protein RICE OUTERMOST

CELL-SPECIFIC 8

BAD35894
51091189
putative homeobox
0.808023

Oryza sativa Japonica Group
2925
4320

[Oryza sativa Japonica Group]

XP_002438026
242095071
hypothetical protein SORBIDRAFT_10g006820
0.789398

Sorghum bicolor

2926
4321

[Sorghum bicolor]

&gt:gi|241916249|gb|EER89393.1|

hypothetical protein SORBIDRAFT_10g006820

[Sorghum bicolor]

EEC80207
54362548
hypothetical protein OsI_22100
0.724928

Oryza sativa Indica Group
2927

[Oryza sativa Indica Group]

384-402
NP_001146570
226496306
hypothetical protein LOC100280166 [Zea mays]
1

Zea mays

2928
4322

&gt:gi|219887859|gb|ACL54304.1| unknown

[Zea mays]

NP_001063308
297609549
Os09g0446200 [Oryza sativa Japonica Group]
0.924125

Oryza sativa Japonica Group
2929
4323

&gt:gi|255678935|dbj|BAF25222.2| Os09g0446200

[Oryza sativa Japonica Group]

EEC84667
54362548
hypothetical protein OsI_31569
0.815175

Oryza sativa Indica Group
2930

[Oryza sativa Indica Group]

Predicted
443-462
XP_002454541
242066503
hypothetical protein SORBIDRAFT_04g032980
1

Sorghum bicolor

2931
4324

siRNA

[Sorghum bicolor]

59211

&gt:gi|241934372|gb|EES07517.1|

hypothetical protein SORBIDRAFT_04g032980

[Sorghum bicolor]

ACR36020
238009969
unknown [Zea mays]
0.951667

Zea mays

2932
4325

NP_001147126
226494332
cell division cycle protein 23 [Zea mays]
0.948333

Zea mays

2933
4326

&gt:gi|195607482|gb|ACG25571.1| cell

division cycle protein 23 [Zea mays]

EEC73723
54362548
hypothetical protein OsI_08332
0.878333

Oryza sativa Indica Group
2934

[Oryza sativa Indica Group]

NP_001047624
115447688
Os02g0656300 [Oryza sativa Japonica Group]
0.876667

Oryza sativa Japonica Group
2935
4327

&gt:gi|49388560|dbj|BAD25679.1| putative

cell division cycle protein 23

[Oryza sativa Japonica Group]

&gt:gi|113537155|dbj|BAF09538.1|

Os02g0656300 [Oryza sativa Japonica Group]

&gt:gi|222623375|gb|EEE57507.1|

hypothetical protein OsJ_07790

[Oryza sativa Japonica Group]

CAC39070
14140112
anaphase-promoting complex subunit
0.875

Oryza sativa

2936
4328

8-like protein [Oryza sativa]

BAK03657
326517476
predicted protein
0.885

Hordeum vulgare subsp. vulgare
2937
4329

[Hordeum vulgare subsp. vulgare]

XP_002266966
225463150
PREDICTED: hypothetical protein
0.701667

Vitis vinifera

2938
4330

[Vitis vinifera]

CAN83330
147844944
hypothetical protein VITISV_005847
0.701667

Vitis vinifera

2939
4331

[Vitis vinifera]

1053-1072
XP_002438417
242095853
hypothetical protein SORBIDRAFT_10g017800
1

Sorghum bicolor

2940
4332

[Sorghum bicolor]

&gt:gi|241916640|gb|EER89784.1|

hypothetical protein SORBIDRAFT_10g017800

[Sorghum bicolor]

NP_001141152
226494465
hypothetical protein LOC100273238 [Zea mays]
0.92435

Zea mays

2941
4333

&gt:gi|194702930|gb|ACF85549.1| unknown

[Zea mays]

ACF85911
194703653
unknown [Zea mays]
0.898345

Zea mays

2942
4334

NP_001057632
115468065
Os06g0474500 [Oryza sativa Japonica Group]
0.869976

Oryza sativa Japonica Group
2943
4335

&gt:gi|51090811|dbj|BAD35288.1| putative

ZmEBE-1 protein [Oryza sativa Japonica Group]

&gt:gi|113595672|dbj|BAF19546.1| Os06g0474500

[Oryza sativa Japonica Group]

&gt:gi|215706920|dbj|BAG93380.1| unnamed

protein product [Oryza sativa Japonica Group]

&gt:gi|215740902|dbj|BAG97058.1| unnamed

protein product [Oryza sativa Japonica Group]

&gt:gi|222635579|gb|EEE65711.1| hypothetical

protein OsJ_21346 [Oryza sativa Japonica Group]

EAZ00932
54362548
hypothetical protein OsI_22962
0.867612

Oryza sativa Indica Group
2944

[Oryza sativa Indica Group]

Predicted
528-547
NP_001152385
226507515
lyase [Zea mays]
1

Zea mays

2945
4336

siRNA

&gt:gi|195655769|gb|ACG47352.1|

59300

lyase [Zea mays]

XP_002441731
242082611
hypothetical protein SORBIDRAFT_08g001440
0.766575

Sorghum bicolor

2946
4337

[Sorghum bicolor]

&gt:gi|241942424|gb|EES15569.1|

hypothetical protein SORBIDRAFT_08g001440

[Sorghum bicolor]

1224-1243
XP_002445025
242080512
hypothetical protein SORBIDRAFT_07g003020
1

Sorghum bicolor

2947
4338

[Sorghum bicolor]

&gt:gi|241941375|gb|EES14520.1|

hypothetical protein SORBIDRAFT_07g003020

[Sorghum bicolor]

NP_001146372
226528117
hypothetical protein LOC100279950 [Zea mays]
0.892514

Zea mays

2948
4339

&gt:gi|219886865|gb|ACL53807.1| unknown

[Zea mays]

XP_002445026
242080514
hypothetical protein SORBIDRAFT_07g003040
0.869482

Sorghum bicolor

2949
4340

[Sorghum bicolor] &

gt:gi|241941376|gb|EES14521.1|

hypothetical protein SORBIDRAFT_07g003040

[Sorghum bicolor]

NP_001169175
293335560
hypothetical protein LOC100383025 [Zea mays]
0.856046

Zea mays

2950
4341

&gt:gi|223975313|gb|ACN31844.1| unknown

[Zea mays]

&gt:gi|223975749|gb|ACN32062.1|

unknown [Zea mays]

BAD11769
42794043
tryptophan decarboxylase [Hordeum vulgare]
0.809981

Hordeum vulgare

2951
4342

NP_001060969
115474744
Os08g0140500 [Oryza sativa Japonica Group]
0.829175

Oryza sativa Japonica Group
2952
4343

&gt:gi|42761330|dbj|BAD11583.1| putative

Aromatic-L-amino-acid decarboxylase

[Oryza sativa Japonica Group]

&gt:gi|45736124|dbj|BAD13170.1| putative

Aromatic-L-amino-acid decarboxylase

[Oryza sativa Japonica Group]

&gt:gi|113622938|dbj|BAF22883.1|

Os08g0140500 [Oryza sativa Japonica Group]

&gt:gi|125560099|gb|EAZ05547.1| hypothetical

protein OsI_27762 [Oryza sativa Indica Group]

BAD11768
42794041
tryptophan decarboxylase
0.809981

Hordeum vulgare subsp. spontaneum
2953
4344

[Hordeum vulgare subsp. spontaneum]

NP_001060968
115474742
Os08g0140300 [Oryza sativa Japonica Group]
0.821497

Oryza sativa Japonica Group
2954
4345

&gt:gi|42761328|dbj|BAD11581.1| putative

Aromatic-L-amino-acid decarboxylase

[Oryza sativa Japonica Group]

&gt:gi|113622937|dbj|BAF22882.1|

Os08g0140300 [Oryza sativa Japonica Group]

&gt:gi|125560097|gb|EAZ05545.1| hypothetical

protein OsI_27760 [Oryza sativa Indica Group]

&gt:gi|125602145|gb|EAZ41470.1| hypothetical

protein OsJ_25993 [Oryza sativa Japonica Group]

&gt:gi|215697229|dbj|BAG91223.1| unnamed

protein product [Oryza sativa Japonica Group]

ADE48535
293612213
putative decarboxylase protein
0.744722

Triticum aestivum

2955

[Triticum aestivum]

94-113
BAJ97340
326528636
predicted protein
1

Hordeum vulgare subsp. spontaneum
2956
4346

[Hordeum vulgare subsp. vulgare]

NP_001168594
293334714
hypothetical protein LOC100382378 [Zea mays]
0.872204

Zea mays

2957
4347

&gt:gi|223949419|gb|ACN28793.1| unknown

[Zea mays]

A2YGP6

RecName: Full = UDP-sugar pyrophosphorylase
0.865815

Oryza sativa Indica Group
2958

NP_001058482
115469765
Os06g0701200 [Oryza sativa Japonica Group]
0.84984

Oryza sativa Japonica Group
2959
4348

&gt:gi|75112500|sp|Q5Z8Y4.1|USP_ORYSJ

RecName: Full = UDP-sugar pyrophosphorylase

&gt:gi|53792734|dbj|BAD53770.1|

UDP-N-acetylglucosamine pyrophosphorylase-like

[Oryza sativa Japonica Group]

&gt:gi|113596522|dbj|BAF20396.1| Os06g0701200

[Oryza sativa Japonica Group]

&gt:gi|215686708|dbj|BAG88961.1| unnamed

protein product [Oryza sativa Japonica Group]

NP_001152310
226501637
LOC100285949 [Zea mays]
0.84984

Zea mays

2960
4349

&gt:gi|195654965|gb|ACG46950.1|

UDP-sugar pyrophospharylase [Zea mays]

EEC81262
54362548
hypothetical protein OsI_24356
0.84984

Oryza sativa Indica Group
2961

[Oryza sativa Indica Group]

EEE66302
54398660
hypothetical protein OsJ_22533
0.833866

Oryza sativa Japonica Group
2962

[Oryza sativa Japonica Group]

Q0GZS3

RecName: Full = UDP-sugar pyrophospharylase;
0.72524

Cucumis melo

2963

AltName: Full = UDP-galaclose/glucose

pyrophosphorylase; Short = UGGPase

&gt:gi|88954061|gb|ABD59006.1|

UDP-galactose/glucose pyrophosphorylase

[Cucumis melo]

XP_002864182
297792594
hypothetical protein ARALYDRAFT_495327
0.71885

Arabidopsis lyrata subsp. lyrata
2964
4350

[Arabidopsis lyrata subsp. lyrata]

&gt:gi|297310017|gb|EFH40441.1| hypothetical

protein ARALYDRAFT_495327

[Arabidopsis lyrata subsp. lyrata]

NP_568775
145359167
UDP-sugar pyrophosphorylase [Arabidopsis thaliana]
0.722045

Arabidopsis thaliana

2965
4351

&gt:gi|75168956|sp|Q9C5I1.1|USP_ARATH

RecName: Full = UDP-sugar pyrophosphorylase;

Short = AtUSP

&gt:gi|13430648|gb|AAK25946.1|AF360236_1

unknown protein [Arabidopsis thaliana]

&gt:gi|14532822|gb|AAK64093.1| unknown

protein [Arabidopsis thaliana]

&gt:gi|84181457|gb|ABC55066.1| nonspecific

UDP-sugar pyrophosphorylase

[Arabidopsis thaliana]

&gt:gi|332008851|gb|AED96234.1|

UDP-sugar pyrophosphorylase

[Arabidopsis thaliana]

1268-1287
XP_002443799
242078060
hypothetical protein SORBIDRAFT_07g002260
1

Sorghum bicolor

2966
4352

[Sorghum bicolor]

&gt:gi|241940149|gb|EES13294.1|

hypothetical protein SORBIDRAFT_07g002260

[Sorghum bicolor]

NP_001170379
293334010
hypothetical protein LOC100384362 [Zea mays]
0.918103

Zea mays

2967
4353

&gt:gi|224035469|gb|ACN36810.1| unknown

[Zea mays]

XP_002454589
242066599
hypothetical protein SORBIDRAFT_04g033960
0.851293

Sorghum bicolor

2968
4354

[Sorghum bicolor]

&gt:gi|241934420|gb|EES07565.1|

hypothetical protein SORBIDRAFT_04g033960

[Sorghum bicolor]

XP_002443797
242078056
hypothetical protein SORBIDRAFT_07g002250
0.788793

Sorghum bicolor

2969
4355

[Sorghum bicolor]

&gt:gi|241940147|gb|EES13292.1|

hypothetical protein SORBIDRAFT_07g002250

[Sorghum bicolor]

NP_001147827
226502679
LHT1 [Zea mays]
0.784483

Zea mays

2970
4356

&gt:gi|195613982|gb|ACG28821.1|

LHT1 [Zea mays]

NP_001152139
226498595
LHT1 [Zea mays]
0.75431

Zea mays

2971
4357

&gt:gi|195653153|gb|ACG46044.1|

LHT1 [Zea mays]

CAD89802
30409135
histidine amino acid transporter
0.784483

Oryza sativa Indica Group
2972
4358

[Oryza sativa Indica Group]

XP_002443796
242078054
hypothetical protein SORBIDRAFT_07g002240
0.75431

Sorghum bicolor

2973
4359

[Sorghum bicolor]

&gt:gi|241940146|gb|EES13291.1|

hypothetical protein SORBIDRAFT_07g002240

[Sorghum bicolor]

241-260
NP_001144625
226498917
hypothetical protein LOC100277643 [Zea mays]
1

Zea mays

2974
4360

&gt:gi|195644788|gb|ACG41862.1| hypothetical

protein [Zea mays]

BAJ94382
326494525
predicted protein
0.762195

Hordeum vulgare subsp. vulgare
2975
4361

[Hordeum vulgare subsp. vulgare]

NP_001047900
115448240
Os02g0711100 [Oryza sativa Japonica Group]
0.75

Oryza sativa Japonica Group
2976
4362

&gt:gi|41052650|dbj|BAD07498.1| pentatricopeptide

(PPR) repeat-containing protein-like

[Oryza sativa Japonica Group]

&gt:gi|41052866|dbj|BAD07780.1| pentatricopeptide

(PPR) repeat-containing protein-like

[Oryza sativa Japonica Group]

&gt:gi|113537431|dbj|BAF09814.1| Os02g0711100

[Oryza sativa Japonica Group]

&gt:gi|125540864|gb|EAY87259.1| hypothetical

protein OsI_08660 [Oryza sativa Indica Group]

&gt:gi|215687282|dbj|BAG91847.1| unnamed

protein product [Oryza sativa Japonica Group]

1395-1414
XP_002458633
242058974
hypothetical protein SORBIDRAFT_03g037090
1

Sorghum bicolor

2977
4363

[Sorghum bicolor]

&gt:gi|241930608|gb|EES03753.1|

hypothetical protein SORBIDRAFT_03g037090

[Sorghum bicolor]

NP_001146020
226507335
hypothetical protein LOC100279551 [Zea mays]
0.858388

Zea mays

2978
4364

&gt:gi|219885345|gb|ACL53047.1| unknown

[Zea mays]

BAJ95510
326505677
predicted protein
0.840959

Hordeum vulgare subsp. vulgare
2979
4365

[Hordeum vulgare subsp. vulgare]

NP_001142614
226529843
hypothetical protein LOC100274883 [Zea mays]
0.814815

Zea mays

2980
4366

&gt:gi|224030957|gb|ACN34554.1| unknown

[Zea mays]

AAX96247
45592979
hypothetical protein LOC_Os11g25920
0.795207

Oryza sativa Japonica Group
2981

[Oryza sativa Japonica Group]

EEC83703
54362548
hypothetical protein OsI_29522
0.786492

Oryza sativa Indica Group
2982

[Oryza sativa Indica Group]

Predicted
50-67
NP_001149733
226509895
UBA and UBX domain-containing protein [Zea mays]
1

Zea mays

2983
4367

siRNA

&gt:gi|195629900|gb|ACG36591.1| UBA and UBX

59379

domain-containing protein [Zea mays]

XP_002446630
242073387
hypothetical protein SORBIDRAFT_06g019230
0.926282

Sorghum bicolor

2984
4368

[Sorghum bicolor]

&gt:gi|241937813|gb|EES10958.1|

hypothetical protein SORBIDRAFT_06g019230

[Sorghum bicolor]

ACN31131
223973886
unknown [Zea mays]
0.807692

Zea mays

2985
4369

NP_001148755
226496278
LOC100282371 [Zea mays]
0.910256

Zea mays

2986
4370

&gt:gi|195621900|gb|ACG32780.1| UBA and UBX

domain-containing protein [Zea mays]

NP_001053018
115458835
Os04g0464500 [Oryza sativa Japonica Group]
0.753205

Oryza sativa Japonica Group
2987
4371

&gt:gi|113564589|dbj|BAF14932.1| Os04g0464500

[Oryza sativa Japonica Group]

CAE04359
32489876
OSJNBa0060P14.10 [Oryza sativa Japonica Group]
0.740385

Oryza sativa Japonica Group
2988
4372

&gt:gi|125548622|gb|EAY94444.1| hypothetical

protein OsI_16215 [Oryza sativa Indica Group]

&gt:gi|125590658|gb|EAZ31008.1| hypothetical

protein OsJ_15090 [Oryza sativa Japonica Group]

Predicted
83-101
XP_002455291
242052290
hypothetical protein SORBIDRAFT_03g007910
1

Sorghum bicolor

2989
4373

siRNA

[Sorghum bicolor]

59474

&gt:gi|241927266|gb|EES00411.1|

hypothetical protein SORBIDRAFT_03g007910

[Sorghum bicolor]

NP_001130987
212275100
hypothetical protein LOC100192092 [Zea mays]
0.7813

Zea mays

2990
4374

&gt:gi|194690638|gb|ACF79403.1| unknown

[Zea mays]

&gt:gi|224030713|gb|ACN34432.1|

unknown [Zea mays]

NP_001130824
212275671
hypothetical protein LOC100191928 [Zea mays]
0.73851

Zea mays

2991
4375

&gt:gi|194690210|gb|ACF79189.1| unknown

[Zea mays]

ACN27042
223945916
unknown [Zea mays]
0.787639

Zea mays

2992
4376

NP_001130385
212275649
hypothetical protein LOC100191481 [Zea mays]
0.786054

Zea mays

2993
4377

&gt:gi|194688994|gb|ACF78581.1| unknown

[Zea mays]

ACG48121
195657306
glycosyltransferase [Zea mays]
0.784469

Zea mays

2994
4378

267-285
XP_002466400
242038010
hypothetical protein SORBIDRAFT_01g007120
1

Sorghum bicolor

2995
4379

[Sorghum bicolor]

&gt:gi|241920254|gb|EER93398.1|

hypothetical protein SORBIDRAFT_01g007120

[Sorghum bicolor]

ACF79259
194690349
unknown [Zea mays]
0.989071

Zea mays

2996
4380

NP_001130882
212275449
hypothetical protein LOC100191986 [Zea mays]
0.986339

Zea mays

2997
4381

&gt:gi|195622040|gb|ACG32850.1|

serine/threonine-protein kinase SAPK8

[Zea mays]

ACL52689
219884628
unknown [Zea mays]
0.978142

Zea mays

2998
4382

BAK05495
326487645
predicted protein
0.945355

Hordeum vulgare subsp. vulgare
2999
4383

[Hordeum vulgare subsp. vulgare]

NP_001051371
115455540
Os03g0764800 [Oryza sativa Japonica Group]
0.934426

Oryza sativa Japonica Group
3000
4384

&gt:gi|71153747|sp|Q7Y0B9.1|SAPK8_ORYSJ

RecName: Full = Serine/threonine-protein kinase

SAPK8; AltName: Full = Osmotic stress/abscisic

acid-activated protein kinase 8

&gt:gi|31415944|gb|AAP50965.1|

putative serine-threonine protein kinase

[Oryza sativa Japonica Group]

&gt:gi|46917344|dbj|BAD18004.1|

serine/threonine protein kinase SAPK8

[Oryza sativa Japonica Group]

&gt:gi|108711239|gb|ABF99034.1|

Serine/threonine-protein kinase SAPK9,

putative, expressed [Oryza sativa Japonica Group]

&gt:gi|113549842|dbj|BAF13285.1| Os03g0764800

[Oryza sativa Japonica Group]

CAN62745
147788087
hypothetical protein VITISV_025025
0.836066

Vitis vinifera

3001

[Vitis vinifera]

XP_002284959
225428694
PREDICTED: hypothetical protein [Vitis vinifera]
0.836066

Vitis vinifera

3002
4385

&gt:gi|297741336|emb|CBI32467.3| unnamed protein

product [Vitis vinifera]

612-630
XP_002440597
242089528
hypothetical protein SORBIDRAFT_09g003790
1

Sorghum bicolor

3003
4386

[Sorghum bicolor]

&gt:gi|241945882|gb|EES19027.1|

hypothetical protein SORBIDRAFT_09g003790

[Sorghum bicolor]

XP_002439286
242086906
hypothetical protein SORBIDRAFT_09g003800
0.933544

Sorghum bicolor

3004
4387

[Sorghum bicolor]

&gt:gi|3386565|gb|AAC28488.1|

1-aminocyclopropane-1-carboxylate oxidase

[Sorghum bicolor]

&gt:gi|241944571|gb|EES17716.1|

hypothetical protein SORBIDRAFT_09g003800

[Sorghum bicolor]

AAR25561
38607362
acc oxidase [Zea mays]
0.933544

Zea mays

3005
4388

NP_001105234
162458172
acc oxidase [Zea mays]
0.93038

Zea mays

3006
4389

&gt:gi|38607365|gb|AAR25562.1|

acc oxidase [Zea mays]

NP_001141367
226495452
hypothetical protein LOC100273458 [Zea mays]
0.93038

Zea mays

3007
4390

&gt:gi|194704206|gb|ACF86187.1| unknown

[Zea mays]

BAK00849
326526920
predicted protein
0.835443

Hordeum vulgare subsp. vulgare
3008
4391

[Hordeum vulgare subsp. vulgare]

BAJ87146
326509860
predicted protein [Hordeum vulgare subsp. vulgare]
0.825949

Hordeum vulgare subsp. vulgare
3009
4392

&gt:gi|326510641|dbj|BAJ87537.1| predicted

protein [Hordeum vulgare subsp. vulgare]

NP_001054657
115462114
Os05g0149400 [Oryza sativa Japonica Group]
0.794304

Oryza sativa Japonica Group
3010
4393

&gt:gi|52353464|gb|AAU44031.1| putative

1-aminocyclopropane-1-carboxylate oxidase

[Oryza sativa Japonica Group]

&gt:gi|113578208|dbj|BAF16571.1| Os05g0149400

[Oryza sativa Japonica Group]

&gt:gi|215686421|dbj|BAG87706.1| unnamed

protein product [Oryza sativa Japonica Group]

&gt:gi|218196096|gb|EEC78523.1| hypothetical

protein OsI_18467 [Oryza sativa Indica Group]

595-613
NP_001151137
226502371
LOC100284770 [Zea mays]
1

Zea mays

3011
4394

&gt:gi|195644530|gb|ACG41733.1| anthranilate

N-benzoyltransferase protein 1 [Zea mays]

XP_002462399
242049309
hypothetical protein SORBIDRAFT_02g025010
0.896074

Sorghum bicolor

3012
4395

[Sorghum bicolor]

&gt:gi|241925776|gb|EER98920.1|

hypothetical protein SORBIDRAFT_02g025010

[Sorghum bicolor]

BAK06725
326504867
predicted protein [Hordeum vulgare subsp. vulgare]
0.840647

Hordeum vulgare subsp. vulgare
3013
4396

&gt:gi|326531672|dbj|BAJ97840.1| predicted protein

[Hordeum vulgare subsp. vulgare]

EAZ09138
54362548
hypothetical protein OsI_31408
0.82679

Oryza sativa Indica Group
3014

[Oryza sativa Indica Group]

NP_001063206
115479224
Os09g0422000 [Oryza sativa Japonica Group]
0.82448

Oryza sativa Japonica Group
3015
4397

&gt:gi|50726120|dbj|BAD33641.1|

putative hydroxycinnamoyl transferase

[Oryza sativa Japonica Group]

&gt:gi|113631439|dbj|BAF25120.1|

Os09g0422000 [Oryza sativa Japonica Group]

&gt:gi|215678844|dbj|BAG95281.1| unnamed

protein product [Oryza sativa Japonica Group]

NP_001147464
226494126
anthranilate N-benzoyltransferase protein 1
0.766744

Zea mays

3016
4398

[Zea mays]

&gt:gi|195611590|gb|ACG27625.1|

anthranilate N-benzoyltransferase protein 1

[Zea mays]

ACF87435
194706701
unknown [Zea mays]
0.764434

Zea mays

3017
4399

XP_002445569
242081600
hypothetical protein SORBIDRAFT_07g021750
0.743649

Sorghum bicolor

3018
4400

[Sorghum bicolor]

&gt:gi|241941919|gb|EES15064.1|

hypothetical protein SORBIDRAFT_07g021750

[Sorghum bicolor]

BAJ94002
326489856
predicted protein
0.741339

Hordeum vulgare subsp. vulgare
3019
4401

[Hordeum vulgare subsp. vulgare]

BAJ92446
326516581
predicted protein
0.720554

Hordeum vulgare subsp. vulgare
3020
4402

[Hordeum vulgare subsp. vulgare]

231-249
ACG50012
195549568
SnRK2.8 [Zea mays]
1

Zea mays

3021
4403

342-360
XP_002444412
242079286
hypothetical protein SORBIDRAFT_07g021570
1

Sorghum bicolor

3022
4404

[Sorghum bicolor]

&gt:gi|241940762|gb|EES13907.1|

hypothetical protein SORBIDRAFT_07g021570

[Sorghum bicolor]

NP_001150060
226495678
mitochondrial glycoprotein [Zea mays]
0.900433

Zea mays

3023
4405

&gt:gi|195636360|gb|ACG37648.1|

mitochondrial glycoprotein [Zea mays]

&gt:gi|224033179|gb|ACN35665.1| unknown

[Zea mays]

98-116
NP_001183574
308081404
hypothetical protein LOC100502167 [Zea mays]
1

Zea mays

3024
4406

&gt:gi|238013154|gb|ACR37612.1| unknown

[Zea mays]

NP_001183715
308081496
hypothetical protein LOC100502308 [Zea mays]
0.931408

Zea mays

3025
4407

&gt:gi|238014104|gb|ACR38087.1| unknown

[Zea mays]

XP_002458491
242058690
hypothetical protein SORBIDRAFT_03g034670
0.859206

Sorghum bicolor

3026
4408

[Sorghum bicolor]

&gt:gi|241930466|gb|EES03611.1|

hypothetical protein SORBIDRAFT_03g034670

[Sorghum bicolor]

BAB56055
20975281
WRKY transcription factor-like
0.707581

Oryza sativa Japonica Group
3027
4409

[Oryza sativa Japonica Group]

&gt:gi|46394280|tpg|DAA05078.1|

TPA_inf: WRKY transcription factor 13

[Oryza sativa (japonica cultivar-group)]

&gt:gi|58042735|gb|AAW63711.1| WRKY13

[Oryza sativa Japonica Group]

&gt:gi|215695180|dbj|BAG90371.1| unnamed

protein product [Oryza sativa Japonica Group]

EAY75827
54362548
hypothetical protein OsI_03741
0.703971

Oryza sativa Indica Group
3028

[Oryza sativa Indica Group]

&gt:gi|132566305|gb|ABO34049.1|

defense-responsive protein WRKY13

[Oryza sativa Indica Group]

EAZ13545
54398660
hypothetical protein OsJ_03461
0.703971

Oryza sativa Japonica Group
3029

[Oryza sativa Japonica Group]

370-388
XP_002465546
242036302
hypothetical protein SORBIDRAFT_01g040900
1

Sorghum bicolor

3030
4410

[Sorghum bicolor]

&gt:gi|241919400|gb|EER92544.1|

hypothetical protein SORBIDRAFT_01g040900

[Sorghum bicolor]

NP_001149345
226504079
phosphomevalonate kinase [Zea mays]
0.916016

Zea mays

3031
4411

&gt:gi|195626562|gb|ACG35111.1|

phosphomevalonate kinase [Zea mays]

ACN31689
223975002
unknown [Zea mays]
0.916016

Zea mays

3032
4412

ACG35008
195626355
phosphomevalonate kinase [Zea mays]
0.919922

Zea mays

3033
4413

NP_001049577
115451952
Os03g0253100 [Oryza sativa Japonica Group]
0.865234

Oryza sativa Japonica Group
3034
4414

&gt:gi|108707213|gb|ABF95008.1|

phosphomevalonate kinase, putative, expressed

[Oryza sativa Japonica Group]

&gt:gi|113548048|dbj|BAF11491.1| Os03g0253100

[Oryza sativa Japonica Group]

EEE58712
54398660
hypothetical protein OsJ_10169
0.865234

Oryza sativa Japonica Group
3035

[Oryza sativa Japonica Group]

EEC74880
54362548
hypothetical protein OsI_10786
0.863281

Oryza sativa Indica Group
3036

[Oryza sativa Indica Group]

821-839
XP_002437161
242093341
hypothetical protein SORBIDRAFT_10g022190
1

Sorghum bicolor

3037
4415

[Sorghum bicolor]

&gt:gi|241915384|gb|EER88528.1|

hypothetical protein SORBIDRAFT_10g022190

[Sorghum bicolor]

NP_001105942
162463452
multidrug resistance protein associated 1
0.918409

Zea mays

3038
4416

[Zea mays]

&gt:gi|37694078|gb|AAO72315.1|

multidrug resistance associated protein 1

[Zea mays]

&gt:gi|37694080|gb|AAO72316.1|

multidrug resistance associated protein 1

[Zea mays]

BAJ96820
326521233
predicted protein
0.805125

Hordeum vulgare subsp. vulgare
3039
4417

[Hordeum vulgare subsp. vulgare]

210-228
NP_001149657
226492307
serine/threonine-protein kinase SAPK8
1

Zea mays

3040
4418

[Zea mays]

&gt:gi|188011171|gb|ACD44937.1|

osmotic stress/ABA-activated protein kinase

[Zea mays]

&gt:gi|195629240|gb|ACG36261.1|

serine/threonine-protein kinase SAPK8

[Zea mays]

&gt:gi|238011080|gb|ACR36575.1|

unknown [Zea mays]

Predicted
794-817
NP_001143962
226501495
hypothetical protein LOC100276777
1

Zea mays

3041
4419

siRNA

[Zea mays]

59580

&gt:gi|195633825|gb|ACG36757.1|

hypothetical protein [Zea mays]

BAJ96330
326516675
predicted protein
0.78209

Hordeum vulgare subsp. vulgare
3042
4420

[Hordeum vulgare subsp. vulgare]

NP_001060795
115474396
Os08g0107100 [Oryza sativa Japonica Group]
0.81791

Oryza sativa Japonica Group
3043
4421

&gt:gi|42408231|dbj|BAD09388.1| unknown

protein [Oryza sativa Japonica Group]

&gt:gi|113622764|dbj|BAF22709.1| Os08g0107100

[Oryza sativa Japonica Group]

&gt:gi|215694360|dbj|BAG89353.1| unnamed

protein product [Oryza sativa Japonica Group]

Predicted
160-178
XP_002456611
242054930
hypothetical protein SORBIDRAFT_03g039360
1

Sorghum bicolor

3044
4422

siRNA

[Sorghum bicolor]

59736

&gt:gi|241928586|gb|EES01731.1|

hypothetical protein SORBIDRAFT_03g039360

[Sorghum bicolor]

NP_001183165
308081376
hypothetical protein LOC100501536 [Zea mays]
0.984568

Zea mays

3045
4423

&gt:gi|238009750|gb|ACR35910.1| unknown

[Zea mays]

XP_002441219
242090772
hypothetical protein SORBIDRAFT_09g022580
0.96142

Sorghum bicolor

3046
4424

[Sorghum bicolor]

&gt:gi|241946504|gb|EES19649.1|

hypothetical protein SORBIDRAFT_09g022580

[Sorghum bicolor]

ACL53191
219885632
unknown [Zea mays]
0.929012

Zea mays

3047
4425

NP_001068540
115486792
Os11g0703900 [Oryza sativa Japonica Group]
0.938272

Oryza sativa Japonica Group
3048
4426

&gt:gi|62733235|gb|AAX95352.1| dnaK-type

molecular chaperone hsp70 - rice (fragment)

[Oryza sativa Japonica Group]

&gt:gi|77552703|gb|ABA95500.1| Heat shock

cognate 70 kDa protein, putative, expressed

[Oryza sativa Japonica Group]

&gt:gi|113645762|dbj|BAF28903.1|

Os11g0703900 [Oryza sativa Japonica Group]

AAR17080
38325814
heat shock protein 70-3
0.935185

Nicotiana tabacum

3049
4427

[Nicotiana tabacum]

AAB99745
2827001
HSP70 [Triticum aestivum]
0.936728

Triticum aestivum

3050
4428

BAK00257
326519768
predicted protein
0.936728

Hordeum vulgare subsp. vulgare
3051
4429

[Hordeum vulgare subsp. vulgare]

245-263
XP_002447095
242074317
hypothetical protein SORBIDRAFT_06g028470
1

Sorghum bicolor

3052
4430

[Sorghum bicolor]

&gt:gi|241938278|gb|EES11423.1|

hypothetical protein SORBIDRAFT_06g028470

[Sorghum bicolor]

NP_001053867
115460533
Os04g0615100 [Oryza sativa Japonica Group]
0.819887

Oryza sativa Japonica Group
3053
4431

&gt:gi|38344254|emb|CAD41792.2|

OSJNBa0008M17.7 [Oryza sativa Japonica Group]

&gt:gi|113565438|dbj|BAF15781.1| Os04g0615100

[Oryza sativa Japonica Group]

&gt:gi|215697586|dbj|BAG91580.1| unnamed

protein product [Oryza sativa Japonica Group]

&gt:gi|218195572|gb|EEC77999.1| hypothetical

protein OsI_17392 [Oryza sativa Indica Group]

&gt:gi|222629547|gb|EEE61679.1| hypothetical

protein OsJ_16148 [Oryza sativa Japonica Group]

NP_001170155
293334500
hypothetical protein LOC100384087 [Zea mays]
0.714822

Zea mays

3054
4432

&gt:gi|224033871|gb|ACN36011.1| unknown

[Zea mays]

ACR34350
238006629
unknown [Zea mays]
0.714822

Zea mays

3055
4433

448-466
ACF84208
194700247
unknown [Zea mays]
1

Zea mays

3056
4434

&gt:gi|194708648|gb|ACF88408.1| unknown

[Zea mays]

NP_001105049
162464284
D-type cyclin [Zea mays]
0.98017

Zea mays

3057
4435

&gt:gi|19070613|gb|AAL83927.1|AF351190_1

D-type cyclin [Zea mays]

ACG35290
195626919
cyclin delta-3 [Zea mays]
0.963173

Zea mays

3058
4436

ACN27070
223945972
unknown [Zea mays]
0.750708

Zea mays

3059
4437

ACG25429
195607197
cyclin delta-3 [Zea mays]
0.747875

Zea mays

3060
4438

XP_002465679
242036568
hypothetical protein SORBIDRAFT_01g043610
0.767705

Sorghum bicolor

3061
4439

[Sorghum bicolor]

&gt:gi|241919533|gb|EER92677.1|

hypothetical protein SORBIDRAFT_01g043610

[Sorghum bicolor]

NP_001105863
162459778
cyclin D5,2 [Zea mays]
0.725212

Zea mays

3062
4440

&gt:gi|61741624|gb|AAX54698.1|

cyclin D5,3B [Zea mays]

167-185
NP_001055754
297604614
Os05g0460000 [Oryza sativa Japonica Group]
1

Oryza sativa Japonica Group
3063
4441

&gt:gi|47900318|gb|AAT39165.1| putative hsp70

[Oryza sativa Japonica Group]

&gt:gi|113579305|dbj|BAF17668.1| Os05g0460000

[Oryza sativa Japonica Group]

&gt:gi|215769174|dbj|BAH01403.1|

unnamed protein product

[Oryza sativa Japonica Group]

&gt:gi|222631852|gb|EEE63984.1| hypothetical

protein OsJ_18811 [Oryza sativa Japonica Group]

XP_002311161
224098389
predicted protein [Populus trichocarpa]
0.94582

Populus trichocarpa

3064
4442

&gt:gi|222850981|gb|EEE88528.1| predicted

protein [Populus trichocarpa]

ACJ11741
211906495
heat shock protein 70 [Gossypium hirsutum]
0.944272

Gossypium hirsutum

3065
4443

ACD45076
188011547
heat-shock protein 70 [Dactylis glomerata]
0.948916

Dactylis glomerata

3066
4444

160-178
NP_001183626
308081354
hypothetical protein LOC100502220 [Zea mays]
1

Zea mays

3067
4445

&gt:gi|238013512|gb|ACR37791.1| unknown

[Zea mays]

XP_002457205
242056118
hypothetical protein SORBIDRAFT_03g003290
0.838791

Sorghum bicolor

3068
4446

[Sorghum bicolor]

&gt:gi|241929180|gb|EES02325.1|

hypothetical protein SORBIDRAFT_03g003290

[Sorghum bicolor]

42-60
ACG31293
195618925
histone H4 [Zea mays]
1

Zea mays

3069
4447

&gt:gi|195641748|gb|ACG40342.1| histone

H4 [Zea mays]

ACG31227
195618793
histone H4 [Zea mays]
0.96875

Zea mays

3070
4448

ACD76815
189099146
histone 4 [Capsella bursa-pastoris]
0.96875

Capsella bursa-pastoris
3071
4449

1101277A

histone H4
0.96875

Triticum aestivum

3072

P62786

RecName: Full = Histone H4 variant TH091
0.96875

Triticum aestivum

3073

&gt:gi|170747|gb|AAA34292.1| histone H4

[Triticum aestivum]

ACG31455
195619249
histone H4 [Zea mays]
0.96875

Zea mays

3074
4450

NP_180441
42569420
histone H4 [Arabidopsis thaliana]
0.96875

Arabidopsis thaliana

3075
4451

&gt:gi|15231283|ref|NP_190179.1|

histone H4 [Arabidopsis thaliana]

&gt:gi|15232318|ref|NP_190941.1|

histone H4 [Arabidopsis thaliana]

&gt:gi|18390794|ref|NP_563793.1|

histone H4 [Arabidopsis thaliana]

&gt:gi|18390815|ref|NP_563797.1|

histone H4 [Arabidopsis thaliana]

&gt:gi|18424269|ref|NP_568911.1|

histone H4 [Arabidopsis thaliana]

&gt:gi|18424305|ref|NP_568918.1|

histone H4 [Arabidopsis thaliana]

&gt:gi|30680368|ref|NP_850939.1|

histone H4 [Arabidopsis thaliana]

&gt:gi|30692704|ref|NP_850660.1|

histone H4 [Arabidopsis thaliana]

&gt:gi|115447965|ref|NP_001047762.1|

Os02g0684500 [Oryza sativa Japonica Group]

&gt:gi|115450365|ref|NP_001048783.1|

Os03g0119900 [Oryza sativa Japonica Group]

&gt:gi|115460128|ref|NP_001053664.1|

Os04g0583600 [Oryza sativa Japonica Group]

&gt:gi|115464339|ref|NP_001055769.1|

Os05g0462700 [Oryza sativa Japonica Group]

&gt:gi|115464373|ref|NP_001055786.1|

Os05g0466600 [Oryza sativa Japonica Group]

&gt:gi|115479303|ref|NP_001063245.1|

Os09g0433600 [Oryza sativa Japonica Group]

&gt:gi|115480569|ref|NP_001063878.1|

Os09g0553100 [Oryza sativa Japonica Group]

&gt:gi|1115483172|ref|NP_001065 179.1|

Os10g0539500 [Oryza sativa Japonica Group]

&gt:gi|212722314|ref|NP_001131585.1|

histone H4 [Zea mays]

&gt:gi|297597921|ref|NP_001044729.2l

Os01g0835900 [Oryza sativa Japonica Group]

&gt:gi|297725773|ref|NP_001175250.1|

Os07g0549900 [Oryza sativa Japonica Group]

&gt:gi|167998046|ref|XP_001751729.1| histone

H4 [Physcomitrella patens subsp. patens]

&gt:gi|168027663|ref|XP_001766349.1| histone

H4 [Physcomitrella patens subsp. patens]

&gt:gi|168031388|ref|XP_001768203.1| histone

H4 [Physcomitrella patens subsp. patens]

&gt:gi|168034381|ref|XP_001769691.1| histone

H4 [Physcomitrella patens subsp. patens]

&gt:gi|168037263|ref|XP_001771124.1| histone

H4 [Physcomitrella patens subsp. patens]

&gt:gi|168042214|ref|XP_001773584.1| histone

H4 [Physcomitrella patens subsp. patens]

&gt:gi|168046645|ref|XP_001775783.1|

histone H4 [Physcomitrella patens subsp. patens]

&gt:gi|168054207|ref|XP_001779524.1| predicted

protein [Physcomitrella patens subsp. patens]

&gt:gi|168055941|ref|XP_001779981.1| histone

H4 [Physcomitrella patens subsp. patens]

&gt:gi|168056875|ref|XP_001780443.1| histone

H4 [Physcomitrella patens subsp. patens]

&gt:gi|168063722|ref|XP_001783818.1| histone

H4 [Physcomitrella patens subsp. patens]

&gt:gi|224097150|ref|XP_002310853.1|

histone H4 [Populus trichocarpa]

&gt:gi|224097156|ref|XP_002310855.1|

histone H4 [Populus trichocarpa]

&gt:gi|224097164|ref|XP_002310859.1|

histone H4 [Populus trichocarpa]

&gt:gi|224098168|ref|XP_002311129.1|

histone H4 [Populus trichocarpa]

&gt:gi|224112905|ref|XP_002316326.1|

histone H4 [Populus trichocarpa]

&gt:gi|224126063|ref|XP_002329652.1|

histone H4 [Populus trichocarpa]

&gt:gi|224133734|ref|XP_002327667.1|

histone H4 [Populus trichocarpa]

&gt:gi|224133742|ref|XP_002327669.1|

histone H4 [Populus trichocarpa]

&gt:gi|224142251|ref|XP_002324472.1|

histone H4 [Populus trichocarpa]

&gt:gi|224142255|ref|XP_002324474.1|

histone H4 [Populus trichocarpa]

&gt:gi|224143736|ref|XP_002325056.1|

histone H4 [Populus trichocarpa]

&gt:gi|224167386|ref|XP_002339024.1|

histone H4 [Populus trichocarpa]

&gt:gi|225435016|ref|XP_002284158.1|

PREDICTED: hypothetical protein

isoform 1 [Vitis vinifera]

&gt:gi|225435124|ref|XP_002284569.1|

PREDICTED: hypothetical protein

isoform 2 [Vitis vinifera]

&gt:gi|225435126|ref|XP_002284564.1|

PREDICTED: hypothetical protein

isoform 1 [Vitis vinifera]

&gt:gi|225440304|ref|XP_002262845.1|

PREDICTED: hypothetical protein

isoform 1 [Vitis vinifera]

&gt:gi|225448771|ref|XP_002281801.1|

PREDICTED: hypothetical protein

isoform 2 [Vitis vinifera]

&gt:gi|225448773|ref|XP_002281789.1|

PREDICTED: hypothetical protein

isoform 1 [Vitis vinifera]

&gt:gi|225449567|ref|XP_002283894.1|

PREDICTED: hypothetical protein

[Vitis vinifera]

&gt:gi|225449569|ref|XP_002283901.1|

PREDICTED: hypothetical protein

isoform 1 [Vitis vinifera]

&gt:gi|225449573|ref|XP_002283912.1|

PREDICTED: hypothetical protein

isoform 1 [Vitis vinifera]

&gt:gi|242035235|ref|XP_002465012.1|

hypothetical protein SORBIDRAFT_01g030460

[Sorghum bicolor]

&gt:gi|242042459|ref|XP_002468624.1|

hypothetical protein SORBIDRAFT_01g049250

[Sorghum bicolor]

&gt:gi|242044758|ref|XP_002460250.1|

hypothetical protein SORBIDRAFT_02g025440

[Sorghum bicolor]

&gt:gi|242050118|ref|XP_002462803.1|

hypothetical protein SORBIDRAFT_02g032240

[Sorghum bicolor]

&gt:gi|242051969|ref|XP_002455130.1|

hypothetical protein SORBIDRAFT_03g004840

[Sorghum bicolor]

&gt:gi|242051971|ref|XP_002455131.1|

hypothetical protein SORBIDRAFT_03g004870

[Sorghum bicolor]

&gt:gi|242054901|ref|XP_002456596.1|

hypothetical protein SORBIDRAFT_03g039090

[Sorghum bicolor]

&gt:gi|242056281|ref|XP_002457286.1|

hypothetical protein SORBIDRAFT_03g004890

[Sorghum bicolor]

&gt:gi|242062908|ref|XP_002452743.1|

hypothetical protein SORBIDRAFT_04g031620

[Sorghum bicolor]

&gt:gi|242076918|ref|XP_002448395.1|

hypothetical protein SORBIDRAFT_06g026490

[Sorghum bicolor]

&gt:gi|242088199|ref|XP_002439932.1|

hypothetical protein SORBIDRAFT_09g022920

[Sorghum bicolor]

&gt:gi|255537239|ref|XP_002509686.1|

histone h4, putative [Ricinus communis]

&gt:gi|255555809|ref|XP_002518940.1|

histone h4, putative [Ricinus communis]

&gt:gi|255568195|ref|XP_002525073.1|

histone h4, putative [Ricinus communis]

&gt:gi|255581703|ref|XP_002531654.1|

histone h4, putative [Ricinus communis]

&gt:gi|255581707|ref|XP_002531656.1|

histone h4, putative [Ricinus communis]

&gt:gi|255584136|ref|XP_002532808.1|

histone h4, putative [Ricinus communis]

&gt:gi|297793525|ref|XP_002864647.1|

hypothetical protein ARALYDRAFT_496101

[Arabidopsis lyrata subsp. lyrata]

&gt:gi|297815748|ref|XP_002875757.1|

hypothetical protein ARALYDRAFT_484971

[Arabidopsis lyrata subsp. lyrata]

&gt:gi|297819196|ref|XP_002877481.1|

hypothetical protein ARALYDRAFT_485010

[Arabidopsis lyrata subsp. lyrata]

&gt:gi|297820110|ref|XP_002877938.1|

hypothetical protein ARALYDRAFT_485763

[Arabidopsis lyrata subsp. lyrata]

&gt:gi|297826247|ref|XP_002881006.1|

hypothetical protein ARALYDRAFT_481787

[Arabidopsis lyrata subsp. lyrata]

&gt:gi|28202123|sp|P59259.2|H4_ARATH

RecName: Full = Histone H4

&gt:gi|51315699|sp|Q6LAF3.3|H4_FLATR

RecName: Full = Histone H4

&gt:gi|51315702|sp|Q6PMI5.3|H4_CHEMJ

RecName: Full = Histone H4

&gt:gi|51315711|sp|Q6WZ83.3|H4_EUCGL

RecName: Full = Histone H4

&gt:gi|51315719|sp|Q76H85.3|H4_SILLA

RecName: Full = Histone H4

&gt:gi|51317313|sp|P62788.2|H4_PEA

RecName: Full = Histone H4

&gt:gi|51317325|sp|P62787.2|H4_MAIZE

RecName: Full = Histone H4

&gt:gi|51317341|sp|P62887.2|H4_LOLTE

RecName: Full = Histone H4

&gt:gi|78100002|sp|P62785.2|H41_WHEAT

RecName: Full = Histone H4 variant TH011

&gt:gi|302425021|sp|P0CG89.1|H4_SOYBN

RecName: Full = Histone H4

&gt:gi|8439886|gb|AAF75072.1|AC007583_8

Identical to histone H4 from

Arabidopsis thaliana gi|S06904

&gt:gi|8439903|gb|AAF75089.1|AC007583_25

Identical to histone H4 from

Arabidopsis thaliana gi|S06904

&gt:gi|11762277|gb|AAG40410.1|AF325058_1

AT5g59690 [Arabidopsis thaliana]

&gt:gi|12039318|gb|AAG46106.1|AC073166_4

histone H4 [Oryza sativa Japonica Group]

&gt:gi|12248031|gb|AAG50107.1|AF334729_1

putative histone H4 protein [Arabidopsis thaliana]

&gt:gi|21795|emb|CAA24924.1|

unnamed protein product [Triticum aestivum]

&gt:gi|166740|gb|AAA32810.1|

histone H4 [Arabidopsis thaliana]

&gt:gi|166742|gb|AAA32811.1|

histone H4 [Arabidopsis thaliana]

&gt:gi|168499|gb|AAA33474.1|

histone H4 (H4C13) [Zea mays]

&gt:gi|168501|gb|AAA33475.1|

histone H4 [Zea mays]

&gt:gi|168503|gb|AAA33476.1|

histone H4 [Zea mays]

&gt:gi|498898|gb|AAA86948.1|

histone H4 homolog [Pisum sativum]

&gt:gi|1806285|emb|CAB01914.1|

histone H4 homologue [Sesbania rostrata]

&gt:gi|3927823|gb|AAC79580.1|

histone H4 [Arabidopsis thaliana]

&gt:gi|6009915|dbj|BAA85120.1|

histone H4-like protein [Solanum melongena]

&gt:gi|6522611|emb|CAB62023.1|

histone H4-like protein [Arabidopsis thaliana]

&gt:gi|7339494|emb|CAB82817.1|

Histone H4-like protein [Arabidopsis thaliana]

&gt:gi|7629993|emb|CAB88335.1|

histone H4-like protein [Arabidopsis thaliana]

&gt:gi|9757918|dbj|BAB08365.1|

histone H4 [Arabidopsis thaliana]

&gt:gi|9758835|dbj|BAB09507.1|

histone H4 [Arabidopsis thaliana]

&gt:gi|13277212|emb|CAC34411.1|

histone H4 [Flaveria trinervia]

&gt:gi|16209693|gb|AAL14404.1|

AT5g59690/mth12_90 [Arabidopsis thaliana]

&gt:gi|17065282|gb|AAL32795.1|

histone H4-like protein [Arabidopsis thaliana]

&gt:gi|17380766|gb|AAL36213.1| putative

histone H4 protein [Arabidopsis thaliana]

&gt:gi|20160804|dbj|BAB89744.1|

histone H4 [Oryza sativa Japonica Group]

&gt:gi|20198175|gb|AAM15445.1|

histone H4 [Arabidopsis thaliana]

&gt:gi|20260010|gb|AAM13352.1|

histone H4-like protein [Arabidopsis thaliana]

&gt:gi|20466418|gb|AAM20526.1|

histone H4-like protein [Arabidopsis thaliana]

&gt:gi|21537385|gb|AAM61726.1|

histone H4-like protein [Arabidopsis thaliana]

&gt:gi|21553628|gb|AAM62721.1|

histone H4-like protein [Arabidopsis thaliana]

&gt:gi|21554094|gb|AAM63175.1|

histone H4-like protein [Arabidopsis thaliana]

&gt:gi|21555353|gb|AAM63839.1|

histone H4-like protein [Arabidopsis thaliana]

&gt:gi|21592313|gb|AAM64264.1|

histone H4-like protein [Arabidopsis thaliana]

&gt:gi|21592673|gb|AAM64622.1|

histone H4-like protein [Arabidopsis thaliana]

&gt:gi|21592795|gb|AAM64744.1|

histone H4-like protein [Arabidopsis thaliana]

&gt:gi|21700843|gb|AAM70545.1|

AT5g59690/mth12_90 [Arabidopsis thaliana]

&gt:gi|22136354|gb|AAM91255.1|

histone H4-like protein

[Arabidopsis thaliana]

&gt:gi|22165124|gb|AAM93740.1|

histone H4 [Oryza sativa Japonica Group]

&gt:gi|23296862|gb|AAN13189.1|

putative histone H4

protein [Arabidopsis thaliana]

&gt:gi|27452909|gb|AAO15293.1|

Unknown protein [Oryza sativa Japonica Group]

&gt:gi|28208264|dbj|BAC56852.1|

histone H4 [Silene latifolia]

&gt:gi|28393088|gb|AAO41978.1|

putative histone H4 protein

[Arabidopsis thaliana]

&gt:gi|28466803|gb|AAO44010.1|

At1g07820 [Arabidopsis thaliana]

&gt:gi|28564804|dbj|BAC57734.1|

histone H4 [Oryza sativa Japonica Group]

&gt:gi|28827318|gb|AAO50503.1|

putative histone H4

protein [Arabidopsis thaliana]

&gt:gi|30575604|gb|AAP33088.1|

histone H4 [Eucalyptus globulus]

&gt:gi|31433309|gb|AAP54838.1|

Histone H4, putative, expressed

[Oryza sativa Japonica Group]

&gt:gi|38346810|emb|CAD41377.2|

OSJNBa0088A01.17 [Oryza sativa Japonica Group]

&gt:gi|41052706|dbj|BAD07563.1|

histone H4 [Oryza sativa Japonica Group]

&gt:gi|46811262|gb|AAT01924.1|

histone H4 [Chelidonium majus]

&gt:gi|47900360|gb|AAT39190.1|

putative histone H4 [Oryza sativa Japonica Group]

&gt:gi|49328063|gb|AAT58763.1|

histone H4 [Oryza sativa Japonica Group]

&gt:gi|49328086|gb|AAT58785.1|

histone H4 [Oryza sativa Japonica Group]

&gt:gi|50251938|dbj|BAD27874.1|

histone H4 [Oryza sativa Japonica Group]

&gt:gi|50726031|dbj|BAD33556.1|

histone H4 [Oryza sativa Japonica Group]

&gt:gi|51969168|dbj|BAD43276.1|

histone H4 [Arabidopsis thaliana]

&gt:gi|51969828|dbj|BAD43606.1|

histone H4 [Arabidopsis thaliana]

&gt:gi|51970436|dbj|BAD43910.1|

histone H4 [Arabidopsis thaliana]

&gt:gi|53749311|gb|AAU90170.1|

histone H4 [Oryza sativa Japonica Group]

&gt:gi|56798269|dbj|BAD82897.1|

histone H4 [Fragaria × ananassa]

&gt:gi|62642127|gb|AAX92702.1|

histone 4 [Picea abies]

&gt:gi|87138105|gb|ABD28289.1|

histone H4-like protein [Glycine max]

&gt:gi|88010997|gb|ABD38885.1|

At3g45930 [Arabidopsis thaliana]

&gt:gi|92885100|gb|ABE87620.1|

Histone core [Medicago truncatula]

&gt:gi|108705887|gb|ABF93682.1|

Histone H4, putative, expressed

[Oryza sativa Japonica Group]

&gt:gi|110738359|dbj|BAF01106.1

Histone H4 like protein [Arabidopsis thaliana]

&gt:gi|110742734|dbj|BAF00179.1|

histone H4 [Arabidopsis thaliana]

&gt:gi|113537293|dbj|BAF09676.1|

Os02g0684500 [Oryza sativa Japonica Group]

&gt:gi|113547254|dbj|BAF10697.1|

Os03g0119900 [Oryza sativa Japonica Group]

&gt:gi|113565235|dbj|BAF15578.1|

Os04g0583600 [Oryza sativa Japonica Group]

&gt:gi|113579320|dbj|BAF17683.1|

Os05g0462700 [Oryza sativa Japonica Group]

&gt:gi|113579337|dbj|BAF17700.1|

Os05g0466600 [Oryza sativa Japonica Group]

&gt:gi|113631478|dbj|BAF25159.1|

Os09g0433600 [Oryza sativa Japonica Group]

&gt:gi|113632111|dbj|BAF25792.1|

Os09g0553100 [Oryza sativa Japonica Group]

&gt:gi|113639788|dbj|BAF27093.1|

Os10g0539500 [Oryza sativa Japonica Group]

&gt:gi|116778467|gb|ABK20879.1|

unknown [Picea sitchensis]

&gt:gi|116782704|gb|ABK22619.1|

unknown [Picea sitchensis]

&gt:gi|116788052|gb|ABK24738.1|

unknown [Picea sitchensis]

&gt:gi|116793524|gb|ABK26777.1|

unknown [Picea sitchensis]

&gt:gi|118482735|gb|ABK93286.1|

unknown [Populus trichocarpa]

&gt:gi|118484754|gb|ABK94246.1|

unknown [Populus trichocarpa]

&gt:gi|118485565|gb|ABK94634.1|

unknown [Populus trichocarpa]

&gt:gi|124360937|gb|ABN08909.1|

Histone core [Medicago truncatula]

&gt:gi|125528296|gb|EAY76410.1|

hypothetical protein OsI_04340

[Oryza sativa Indica Group]

&gt:gi|125532798|gb|EAY79363.1|

hypothetical protein OsI_34491

[Oryza sativa Indica Group]

&gt:gi|125540704|gb|EAY87099.1|

hypothetical protein OsI_08497

[Oryza sativa Indica Group]

&gt:gi|125542165|gb|EAY88304.1|

hypothetical protein OsI_09762

[Oryza sativa Indica Group]

&gt:gi|125549476|gb|EAY95298.1|

hypothetical protein OsI_17123

[Oryza sativa Indica Group]

&gt:gi|125552628|gb|EAY98337.1|

hypothetical protein OsI_20247

[Oryza sativa Indica Group]

&gt:gi|125552649|gb|EAY98358.1|

hypothetical protein OsI_20269

[Oryza sativa Indica Group]

&gt:gi|125558734|gb|EAZ04270.1|

hypothetical protein OsI_26413

[Oryza sativa Indica Group]

&gt:gi|125563829|gb|EAZ09209.1|

hypothetical protein OsI_31484

[Oryza sativa Indica Group]

&gt:gi|125564638|gb|EAZ10018.1|

hypothetical protein OsI_32321

[Oryza sativa Indica Group]

&gt:gi|125572554|gb|EAZ14069.1|

hypothetical protein OsJ_03994

[Oryza sativa Japonica Group]

&gt:gi|125575549|gb|EAZ16833.1|

hypothetical protein OsJ_32304

[Oryza sativa Japonica Group]

&gt:gi|125583277|gb|EAZ24208.1|

hypothetical protein OsJ_07955

[Oryza sativa Japonica Group]

&gt:gi|125584717|gb|EAZ25381.1|

hypothetical protein OsJ_09199

[Oryza sativa Japonica Group]

&gt:gi|125591413|gb|EAZ31763.1|

hypothetical protein OsJ_15915

[Oryza sativa Japonica Group]

&gt:gi|125600645|gb|EAZ40221.1|

hypothetical protein OsJ_24666

[Oryza sativa Japonica Group]

&gt:gi|125606566|gb|EAZ45602.1|

hypothetical protein OsJ_30268

[Oryza sativa Japonica Group]

&gt:gi|146403794|gb|ABQ32303.1|

putative histone H4-like protein

[Artemisia annua]

&gt:gi|147800359|emb|CAN64268.1|

hypothetical protein VITISV_036365

[Vitis vinifera]

&gt:gi|147826823|emb|CAN59705.1|

hypothetical protein VITISV_010247

[Vitis vinifera]

&gt:gi|147826824|emb|CAN59706.1|

hypothetical protein VITISV_010248

[Vitis vinifera]

&gt:gi|147839844|emb|CAN68239.1|

hypothetical protein VITISV_006985

[Vitis vinifera]

&gt:gi|147842470|emb|CAN63143.1|

hypothetical protein VITISV_034577

[Vitis vinifera]

&gt:gi|147855175|emb|CAN79580.1|

hypothetical protein VITISV_002271

[Vitis vinifera]

&gt:gi|147855176|emb|CAN79581.1|

hypothetical protein VITISV_002272

[Vitis vinifera]

&gt:gi|147855413|emb|CAN79612.1|

hypothetical protein VITISV_035467

[Vitis vinifera]

&gt:gi|147858185|emb|CAN79680.1|

hypothetical protein VITISV_034640

[Vitis vinifera]

&gt:gi|147859377|emb|CAN83554.1|

hypothetical protein VITISV_030356

[Vitis vinifera]

&gt:gi|158828217|gb|ABW81095.1|

H4his18 [Cleome spinosa]

&gt:gi|162664647|gb|EDQ51358.1| histone

H4 [Physcomitrella patens subsp. patens]

&gt:gi|162668119|gb|EDQ54733.1| histone

H4 [Physcomitrella patens subsp. patens]

&gt:gi|162668586|gb|EDQ55190.1| histone

H4 [Physcomitrella patens subsp. patens]

&gt:gi|162669106|gb|EDQ55700.1| predicted protein

[Physcomitrella patens subsp. patens]

&gt:gi|162672790|gb|EDQ59322.1| histone

H4 [Physcomitrella patens subsp. patens]

&gt:gi|162675123|gb|EDQ61622.1| histone

H4 [Physcomitrella patens subsp. patens]

&gt:gi|162677657|gb|EDQ64125.1| histone

H4 [Physcomitrella patens subsp. patens]

&gt:gi|162679040|gb|EDQ65492.1| histone

H4 [Physcomitrella patens subsp. patens]

&gt:gi|162680641|gb|EDQ67076.1| histone

H4 [Physcomitrella patens subsp. patens]

&gt:gi|162682563|gb|EDQ68981.1| histone

H4 [Physcomitrella patens subsp. patens]

&gt:gi|162696827|gb|EDQ83164.1| histone

H4 [Physcomitrella patens subsp. patens]

&gt:gi|194691936|gb|ACF80052.1|

unknown [Zea mays]

&gt:gi|194693488|gb|ACF80828.1|

unknown [Zea mays]

&gt:gi|194696282|gb|ACF82225.1|

unknown [Zea mays]

&gt:gi|194696408|gb|ACF82288.1|

unknown [Zea mays]

&gt:gi|194698290|gb|ACF83229.1|

unknown [Zea mays]

&gt:gi|194698982|gb|ACF83575.1|

unknown [Zea mays]

&gt:gi|194699362|gb|ACF83765.1|

unknown [Zea mays]

&gt:gi|194700348|gb|ACF84258.1|

unknown [Zea mays]

&gt:gi|194704392|gb|ACF86280.1|

unknown [Zea mays]

&gt:gi|194706260|gb|ACF87214.1|

unknown [Zea mays]

&gt:gi|194708346|gb|ACF88257.1|

unknown [Zea mays]

&gt:gi|195605566|gb|ACG24613.1|

histone H4 [Zea mays]

&gt:gi|195605632|gb|ACG24646.1|

histone H4 [Zea mays]

&gt:gi|195605640|gb|ACG24650.1|

histone H4 [Zea mays]

&gt:gi|195605982|gb|ACG24821.1|

histone H4 [Zea mays]

&gt:gi|195606488|gb|ACG25074.1|

histone H4 [Zea mays]

&gt:gi|195606652|gb|ACG25 156.1|

histone H4 [Zea mays]

&gt:gi|195607014|gb|ACG25337.1|

histone H4 [Zea mays]

&gt:gi|195607340|gb|ACG25500.1|

histone H4 [Zea mays]

&gt:gi|195617184|gb|ACG30422.1|

histone H4 [Zea mays]

&gt:gi|195617244|gb|ACG30452.1|

histone H4 [Zea mays]

&gt:gi|195617708|gb|ACG30684.1|

histone H4 [Zea mays]

&gt:gi|195617830|gb|ACG30745.1|

histone H4 [Zea mays]

&gt:gi|195617840|gb|ACG30750.1|

histone H4 [Zea mays]

&gt:gi|195617842|gb|ACG3075 1.1|

histone H4 [Zea mays]

&gt:gi|195617880|gb|ACG30770.1|

histone H4 [Zea mays]

&gt:gi|195618008|gb|ACG30834.1|

histone H4 [Zea mays]

&gt:gi|195618012|gb|ACG30836.1|

histone H4 [Zea mays]

&gt:gi|195618076|gb|ACG30868.1|

histone H4 [Zea mays]

&gt:gi|195618078|gb|ACG30869.1|

histone H4 [Zea mays]

&gt:gi|195618086|gb|ACG30873.1|

histone H4 [Zea mays]

&gt:gi|195618174|gb|ACG30917.1|

histone H4 [Zea mays]

&gt:gi|195618332|gb|ACG30996.1|

histone H4 [Zea mays]

&gt:gi|195618430|gb|ACG31045.1|

histone H4 [Zea mays]

&gt:gi|195618454|gb|ACG31057.1|

histone H4 [Zea mays]

&gt:gi|195618798|gb|ACG31229.1|

histone H4 [Zea mays]

&gt:gi|195618800|gb|ACG31230.1|

histone H4 [Zea mays]

&gt:gi|195618808|gb|ACG31234.1|

histone H4 [Zea mays]

&gt:gi|195618940|gb|ACG31300.1|

histone H4 [Zea mays]

&gt:gi|195618970|gb|ACG31315.1|

histone H4 [Zea mays]

&gt:gi|195620178|gb|ACG31919.1|

histone H4 [Zea mays]

&gt:gi|195621558|gb|ACG32609.1|

histone H4 [Zea mays]

&gt:gi|195623194|gb|ACG33427.1|

histone H4 [Zea mays]

&gt:gi|195625166|gb|ACG34413.1|

histone H4 [Zea mays]

&gt:gi|195626072|gb|ACG34866.1|

histone H4 [Zea mays]

&gt:gi|195628242|gb|ACG35951.1|

histone H4 [Zea mays]

&gt:gi|195628292|gb|ACG35976.1|

histone H4 [Zea mays]

&gt:gi|195628370|gb|ACG36015.1|

histone H4 [Zea mays]

&gt:gi|195629326|gb|ACG36304.1|

histone H4 [Zea mays]

&gt:gi|195630263|gb|ACG36622.1|

histone H4 [Zea mays]

&gt:gi|195635063|gb|ACG37000.1|

histone H4 [Zea mays]

&gt:gi|195635563|gb|ACG37250.1|

histone H4 [Zea mays]

&gt:gi|195636274|gb|ACG37605.1|

histone H4 [Zea mays]

&gt:gi|195636714|gb|ACG37825.1|

histone H4 [Zea mays]

&gt:gi|195638688|gb|ACG388 12.1|

histone H4 [Zea mays]

&gt:gi|195639506|gb|ACG39221.1|

histone H4 [Zea mays]

&gt:gi|195658023|gb|ACG48479.1|

histone H4 [Zea mays]

&gt:gi|195658045|gb|ACG48490.1|

histone H4 [Zea mays]

&gt:gi|195658083|gb|ACG48509.1|

histone H4 [Zea mays]

&gt:gi|195658353|gb|ACG48644.1|

histone H4 [Zea mays]

&gt:gi|195658451|gb|ACG48693.1|

histone H4 [Zea mays]

&gt:gi|195659307|gb|ACG49121.1|

histone H4 [Zea mays]

&gt:gi|215740727|dbj|BAG97383.1|

unnamed protein product

[Oryza sativa Japonica Group]

&gt:gi|215765078|dbj|BAG86775.1|

unnamed protein product

[Oryza sativa Japonica Group]

&gt:gi|215765094|dbj|BAG86791.1|

unnamed protein product

[Oryza sativa Japonica Group]

&gt:gi|215765174|dbj|BAG86871.1|

unnamed protein product

[Oryza sativa Japonica Group]

&gt:gi|215765195|dbj|BAG86892.1|

unnamed protein product

[Oryza sativa Japonica Group]

&gt:gi|215767370|dbj|BAG99598.1|

unnamed protein product

[Oryza sativa Japonica Group]

&gt:gi|215767525|dbj|BAG99753.1|

unnamed protein product

[Oryza sativa Japonica Group]

&gt:gi|222423594|dbj|BAH19766.1|

AT1G07820 [Arabidopsis thaliana]

&gt:gi|222631868|gb|EEE64000.1|

hypothetical protein OsJ_18829

[Oryza sativa Japonica Group]

&gt:gi|222641632|gb|EEE69764.1|

hypothetical protein OsJ_29473

[Oryza sativa Japonica Group]

&gt:gi|222836752|gb|EEE75145.1|

histone H4 [Populus trichocarpa]

&gt:gi|222836754|gb|EEE75147.1|

histone H4 [Populus trichocarpa]

&gt:gi|222850949|gb|EEE88496.1|

histone H4 [Populus trichocarpa]

&gt:gi|222853756|gb|EEE91303.1|

histone H4 [Populus trichocarpa]

&gt:gi|222853758|gb|EEE91305.1|

histone H4 [Populus trichocarpa]

&gt:gi|222853762|gb|EEE91309.1|

histone H4 [Populus trichocarpa]

&gt:gi|222865366|gb|EEF02497.1|

histone H4 [Populus trichocarpa]

&gt:gi|222865906|gb|EEF03037.1|

histone H4 [Populus trichocarpa]

&gt:gi|222865908|gb|EEF03039.1|

histone H4 [Populus trichocarpa]

&gt:gi|222866490|gb|EEF03621.1|

histone H4 [Populus trichocarpa]

&gt:gi|222870533|gb|EEF07664.1|

histone H4 [Populus trichocarpa]

&gt:gi|222874224|gb|EEF11355.1|

histone H4 [Populus trichocarpa]

&gt:gi|223527428|gb|EEF29565.1|

histone h4, putative [Ricinus communis]

&gt:gi|223528712|gb|EEF30724.1|

histone h4, putative [Ricinus communis]

&gt:gi|223528714|gb|EEF30726.1|

histone h4, putative [Ricinus communis]

&gt:gi|223535654|gb|EEF37320.1|

histone h4, putative [Ricinus communis]

&gt:gi|223541927|gb|EEF43473.1|

histone h4, putative [Ricinus communis]

&gt:gi|223549585|gb|EEF51073.1|

histone h4, putative [Ricinus communis]

&gt:gi|224032847|gb|ACN35499.1|

unknown [Zea mays]

&gt:gi|224285053|gb|ACN40254.1|

unknown [Picea sitchensis]

&gt:gi|238011888|gb|ACR36979.1|

unknown [Zea mays]

&gt:gi|238012310|gb|ACR37190.1|

unknown [Zea mays]

&gt:gi|238014142|gb|ACR38 106.1|

unknown [Zea mays]

&gt:gi|238014264|gb|ACR38167.1|

unknown [Zea mays]

&gt:gi|238014334|gb|ACR38202.1|

unknown [Zea mays]

&gt:gi|238014894|gb|ACR38482.1|

unknown [Zea mays]

&gt:gi|241918866|gb|EER92010.1|

hypothetical protein SORBIDRAFT_01g030460

[Sorghum bicolor]

&gt:gi|241922478|gb|EER95622.1|

hypothetical protein SORBIDRAFT_01g049250

[Sorghum bicolor]

&gt:gi|241923627|gb|EER96771.1|

hypothetical protein SORBIDRAFT_02g025440

[Sorghum bicolor]

&gt:gi|241926180|gb|EER99324.1|

hypothetical protein SORBIDRAFT_02g032240

[Sorghum bicolor]

&gt:gi|241927105|gb|EES00250.1|

hypothetical protein SORBIDRAFT_03g004840

[Sorghum bicolor]

&gt:gi|241927106|gb|EES00251.1|

hypothetical protein SORBIDRAFT_03g004870

[Sorghum bicolor]

&gt:gi|241928571|gb|EES01716.1|

hypothetical protein SORBIDRAFT_03g039090

[Sorghum bicolor]

&gt:gi|241929261|gb|EES02406.1|

hypothetical protein SORBIDRAFT_03g004890

[Sorghum bicolor]

&gt:gi|241932574|gb|EES05719.1|

hypothetical protein SORBIDRAFT_04g031620

[Sorghum bicolor]

&gt:gi|241939578|gb|EES12723.1|

hypothetical protein SORBIDRAFT_06g026490

[Sorghum bicolor]

&gt:gi|241945217|gb|EES18362.1|

hypothetical protein SORBIDRAFT_09g022920

[Sorghum bicolor]

&gt:gi|255625991|gb|ACU13340.1|

unknown [Glycine max]

&gt:gi|255673853|dbj|BAF06643.2|

Os01g0835900 [Oryza sativa Japonica Group]

&gt:gi|255677871|dbj|BAH93978.1|

Os07g0549900 [Oryza sativa Japonica Group]

&gt:gi|297310482|gb|EFH40906.1|

hypothetical protein ARALYDRAFT_496101

[Arabidopsis lyrata subsp. lyrata]

&gt:gi|297321595|gb|EFH52016.1|

hypothetical protein ARALYDRAFT_484971

[Arabidopsis lyrata subsp. lyrata]

&gt:gi|297323319|gb|EFH53740.1|

hypothetical protein ARALYDRAFT_485010

[Arabidopsis lyrata subsp. lyrata]

&gt:gi|297323776|gb|EFH54197.1|

hypothetical protein ARALYDRAFT_485763

[Arabidopsis lyrata subsp. lyrata]

&gt:gi|297326845|gb|EFH57265.1|

hypothetical protein ARALYDRAFT_481787

[Arabidopsis lyrata subsp. lyrata]

&gt:gi|326488189|dbj|BAJ89933.1|

predicted protein

[Hordeum vulgare subsp. vulgare]

&gt:gi|326489645|dbj|BAK01803.1|

predicted protein

[Hordeum vulgare subsp. vulgare]

&gt:gi|326490127|dbj|BAJ94137.1|

predicted protein

[Hordeum vulgare subsp. vulgare]

&gt:gi|326497283|dbj|BAK02226.1|

predicted protein

[Hordeum vulgare subsp. vulgare]

&gt:gi|326498581|dbj|BAJ98718.1|

predicted protein

[Hordeum vulgare subsp. vulgare]

&gt:gi|326500352|dbj|BAK06265.1|

predicted protein

[Hordeum vulgare subsp. vulgare]

&gt:gi|326503956|dbj|BAK02764.1|

predicted protein

[Hordeum vulgare subsp. vulgare]

&gt:gi|326505870|dbj|BAJ91174.1|

predicted protein

[Hordeum vulgare subsp. vulgare]

&gt:gi|326505922|dbj|BAJ91200.1|

predicted protein

[Hordeum vulgare subsp. vulgare]

&gt:gi|326506492|dbj|BAJ86564.1|

predicted protein

[Hordeum vulgare subsp. vulgare]

&gt:gi|326506520|dbj|BAJ86578.1|

predicted protein

[Hordeum vulgare subsp. vulgare]

&gt:gi|326522106|dbj|BAK04181.1|

predicted protein

[Hordeum vulgare subsp. vulgare]

&gt:gi|326523419|dbj|BAJ88750.1|

predicted protein

[Hordeum vulgare subsp. vulgare]

&gt:gi|326524814|dbj|BAK04343.1|

predicted protein

[Hordeum vulgare subsp. vulgare]

&gt:gi|326529405|dbj|BAK04649.1|

predicted protein

[Hordeum vulgare subsp. vulgare]

&gt:gi|326530001|dbj|BAK08280.1|

predicted protein

[Hordeum vulgare subsp. vulgare]

&gt:gi|326532258|dbj|BAK05058.1|

predicted protein

[Hordeum vulgare subsp. vulgare]

&gt:gi|326532458|dbj|BAK05158.1|

predicted protein

[Hordeum vulgare subsp. vulgare]

&gt:gi|326533346|dbj|BAJ93645.1|

predicted protein

[Hordeum vulgare subsp. vulgare]

&gt:gi|330253071|gb|AEC08165.1|

histone H4 [Arabidopsis thaliana]

&gt:gi|330318553|gb|AEC10949.1|

histone H4 [Camellia sinensis]

&gt:gi|332009837|gb|AED97220.1|

histone H4 [Arabidopsis thaliana]

&gt:gi|332009877|gb|AED97260.1|

histone H4 [Arabidopsis thaliana]

&gt:gi|332190037|gb|AEE28158.1|

histone H4 [Arabidopsis thaliana]

&gt:gi|332190066|gb|AEE28187.1|

histone H4 [Arabidopsis thaliana]

&gt:gi|332190067|gb|AEE28188.1|

histone H4 [Arabidopsis thaliana]

&gt:gi|332644570|gb|AEE78091.1|

histone H4 [Arabidopsis thaliana]

&gt:gi|332644625|gb|AEE78 146.1|

histone H4 [Arabidopsis thaliana]

&gt:gi|332645612|gb|AEE79133.1|

histone H4 [Arabidopsis thaliana]

&gt:gi|225838|prf||1314298A

histone H4

AAT08725
47027019
histone H4 [Hyacinthus orientalis]
0.96875

Hyacinthus orientalis

3076
4452

ADL36649
302398708
C3HL domain class transcription factor
0.96875

Malus × domestica

3077
4453

[Malus × domestica]

&gt:gi|302398719|gb|ADL36654.1|

C3HL domain class transcription factor

[Malus × domestica]

15-33
NP_001044757
297597935
Os01g0840100 [Oryza sativa Japonica Group]
1

Oryza sativa Japonica Group
3078
4454

&gt:gi|15623835|dbj|BAB67894.1| putative

HSP70 [Oryza sativa Japonica Group]

&gt:gi|21104622|dbj|BAB93214.1| putative

HSP70 [Oryza sativa Japonica Group]

&gt:gi|113534288|dbj|BAF06671.1| Os01g0840100

[Oryza sativa Japonica Group]

&gt:gi|125572585|gb|EAZ14100.1| hypothetical

protein OsJ_04024 [Oryza sativa Japonica Group]

&gt:gi|215769289|dbj|BAH01518.1| unnamed

protein product [Oryza sativa Japonica Group]

&gt:gi|306416013|gb|ADM86881.1| 70 kDa heat

shock protein [Oryza sativa Japonica Group]

&gt:gi|313575779|gb|ADR66969.1| 70 kDa heat

shock protein [Oryza sativa Japonica Group]

XP_002884912
297834059
hypothetical protein ARALYDRAFT_897465
0.94444

Arabidopsis lyrata subsp. lyrata
3079
4455

[Arabidopsis lyrata subsp. lyrata]

&gt:gi|297330752|gb|EFH61171.1|

hypothetical protein ARALYDRAFT_897465

[Arabidopsis lyrata subsp. lyrata]

703-721
NP_001144808
226501057
hypothetical protein LOC100277884 [Zea mays]
1

Zea mays

3080
4456

&gt:gi|195647306|gb|ACG43121.1|

hypothetical protein [Zea mays]

152-170
XP_002466218
242037646
hypothetical protein SORBIDRAFT_01g003720
1

Sorghum bicolor

3081
4457

[Sorghum bicolor]

&gt:gi|241920072|gb|EER93216.1|

hypothetical protein SORBIDRAFT_01g003720

[Sorghum bicolor]

NP_001144602
226501987
hypothetical protein LOC100277618 [Zea mays]
0.952489

Zea mays

3082
4458

&gt:gi|195644458|gb|ACG41697.1|

hypothetical protein [Zea mays]

CAE05414
61656646
OSJNBa0035I04.2 [Oryza sativa Japonica Group]
0.834842

Oryza sativa Japonica Group
3083
4459

&gt:gi|38605918|emb|CAE05953.3|

OSJNBb0088C09.12 [Oryza sativa Japonica Group]

&gt:gi|116309409|emb|CAH66485.1|

OSIGBa0076I14.6 [Oryza sativa Indica Group]

EEC77275
54362548
hypothetical protein OsI_15905
0.837104

Oryza sativa Indica Group
3084

[Oryza sativa Indica Group]

NP_001052798
297602722
Os04g0423700 [Oryza sativa Japonica Group]
0.834842

Oryza sativa Japonica Group
3085
4460

&gt:gi|255675459|dbj|BAF14712.2|

Os04g0423700 [Oryza sativa Janonica Group]

ACN34295
224030438
unknown [Zea mays]
0.769231

Zea mays

3086
4461

EEC73359
54362548
hypothetical protein OsI_07583
0.794118

Oryza sativa Indica Group
3087

[Oryza sativa Indica Group]

XP_002453960
242065341
hypothetical protein SORBIDRAFT_04g022230
0.721719

Sorghum bicolor

3088
4462

[Sorghum bicolor]

&gt:gi|241933791|gb|EES06936.1|

hypothetical protein SORBIDRAFT_04g022230

[Sorghum bicolor]

Predicted
167-186
ACR34837
238007603
unknown [Zea mays]
1

Zea mays

3089
4463

siRNA

59799

ACF84683
194701197
unknown [Zea mays]
1

Zea mays

3090
4464

&gt:gi|195638498|gb|ACG38717.1|

monoglyceride lipase [Zea mays]

NP_001136909
219363598
hypothetical protein LOC100217066 [Zea mays]
0.838235

Zea mays

3091
4465

&gt:gi|194697568|gb|ACF82868.1|

unknown [Zea mays]

EEC70511
54362548
hypothetical protein OsI_01608
0.814706

Oryza sativa Indica Group
3092

[Oryza sativa Indica Group]

XP_002439655
242087644
hypothetical protein SORBIDRAFT_09g018060
0.752941

Sorghum bicolor

3093
4466

[Sorghum bicolor]

&gt:gi|241944940|gb|EES18085.1|

hypothetical protein SORBIDRAFT_09g018060

[Sorghum bicolor]

BAK01593
326489218
predicted protein
0.738235

Hordeum vulgare subsp. vulgare
3094
4467

[Hordeum vulgare subsp. vulgare]

BAJ99202
326503153
predicted protein
0.738235

Hordeum vulgare subsp. vulgare
3095
4468

[Hordeum vulgare subsp. vulgare]

NP_001055317
115463434
Os05g0363100 [Oryza sativa Japonica Group]
0.720588

Oryza sativa Japonica Group
3096
4469

&gt:gi|54287660|gb|AAV31404.1|

putative phospholipase

[Oryza sativa Japonica Group]

&gt:gi|113578868|dbj|BAF17231.1|

Os05g0363100 [Oryza sativa Japonica Group]

EEE63431
54398660
hypothetical protein OsJ_18244
0.720588

Oryza sativa Japonica Group
3097

[Oryza sativa Japonica Group]

255-274
XP_002455548
242052804
hypothetical protein SORBIDRAFT_03g012970
1

Sorghum bicolor

3098
4470

[Sorghum bicolor]

&gt:gi|241927523|gb|EES00668.1|

hypothetical protein SORBIDRAFT_03g012970

[Sorghum bicolor]

660-679
XP_002444285
242079032
hypothetical protein SORBIDRAFT_07g019500
1

Sorghum bicolor

3099
4471

[Sorghum bicolor]

&gt:gi|241940635|gb|EES13780.1|

hypothetical protein SORBIDRAFT_07g019500

[Sorghum bicolor]

NP_001149164
226533573
F-box domain containing protein [Zea mays]
0.795154

Zea mays

3100
4472

&gt:gi|195625194|gb|ACG34427.1| F-box domain

containing protein [Zea mays]

Predicted
344-363
NP_001132616
239047681
hypothetical protein LOC100194090 [Zea mays]
1

Zea mays

3101
4473

siRNA

&gt:gi|194703996|gb|ACF86082.1|

59800

unknown [Zea mays]

&gt:gi|238908725|gb|ACF81540.21

unknown [Zea mays]

NP_001147445
226501241
myb-related protein Hv33 [Zea mays]
0.960725

Zea mays

3102
4474

&gt:gi|195611444|gb|ACG27552.1|

myb-related protein Hv33 [Zea mays]

XP_002465218
242035646
hypothetical protein SORBIDRAFT_01g034270
0.864048

Sorghum bicolor

3103
4475

[Sorghum bicolor]

&gt:gi|241919072|gb|EER92216.1|

hypothetical protein SORBIDRAFT_01g034270

[Sorghum bicolor]

Predicted
1526-1544
NP_001143089
226498753
hypothetical protein LOC100275564 [Zea mays]
1

Zea mays

3104
4476

siRNA

&gt:gi|195614134|gb|ACG28897.1|

59820

hypothetical protein [Zea mays]

Predicted
871-891
XP_002458387
242058482
hypothetical protein SORBIDRAFT_03g032650
1

Sorghum bicolor

3105
4477

siRNA

[Sorghum bicolor]

59918

&gt:gi|241930362|gb|EES03507.1|

hypothetical protein SORBIDRAFT_03g032650

[Sorghum bicolor]

NP_001169333
293332220
hypothetical protein LOC100383200 [Zea mays]
0.862136

Zea mays

3106
4478

&gt:gi|224028761|gb|ACN33456.1|

unknown [Zea mays]

EAY75564
54362548
hypothetical protein OsI_03468
0.780583

Oryza sativa Indica Group
3107

[Oryza sativa Indica Group]

NP_001044038
115439516
Os01g0710200 [Oryza sativa Japonica Group]
0.778641

Oryza sativa Japonica Group
3108
4479

&gt:gi|56784137|dbj|BAD81522.1| polyamine

oxidase-like [Oryza sativa Japonica Group]

&gt:gi|113533569|dbj|BAF05952.1| Os01g0710200

[Oryza sativa Japonica Group]

&gt:gi|125571772|gb|EAZ13287.1|

hypothetical protein OsJ_03212

[Oryza sativa Japonica Group]

BAK01686
326489405
predicted protein
0.765049

Hordeum vulgare subsp. vulgare
3109
4480

[Hordeum vulgare subsp. vulgare]

Predicted
20-37
AAY42386
65335862
inorganic phosphate transporter 2
1

Zea mays

3110
4481

siRNA

[Zea mays]

60421

ACF85228
194702287
unknown [Zea mays]
0.987085

Zea mays

3111
4482

&gt:gi|238007276|gb|ACR34673.1|

unknown [Zea mays]

NP_001105269
162458547
phosphate transporter protein 1 [Zea mays]
0.987085

Zea mays

3112
4483

&gt:gi|49066604|gb|AAT51690.1|

phosphate transport protein [Zea mays]

ACF84347
194700525
unknown [Zea mays]
0.98524

Zea mays

3113
4484

AAY42388
65335893
inorganic phosphate transporter 4
0.98524

Zea mays

3114
4485

[Zea mays]

XP_002464558
242034326
hypothetical protein SORBIDRAFT_01g020570
0.948339

Sorghum bicolor

3115
4486

[Sorghum bicolor]

&gt:gi|241918412|gb|EER91556.1|

hypothetical protein SORBIDRAFT_01g020570

[Sorghum bicolor]

NP_001105816
162461218
phosphate transporter protein2 [Zea mays]
0.944649

Zea mays

3116
4487

&gt:gi|65335848|gb|AAY42385.1|

inorganic phosphate transporter 1

[Zea mays]

&gt:gi|223944389|gb|ACN26278.1|

unknown [Zea mays]

ACG38622
195638307
inorganic phosphate transporter
0.931734

Zea mays

3117
4488

1-4 [Zea mays]

AAO72437
29367130
phosphate transporter HvPT4
0.841328

Hordeum vulgare subsp. vulgare
3118
4489

[Hordeum vulgare subsp. vulgare]

&gt:gi|29367133|gb|AAO72438.1|

phosphate transporter HvPT4

[Hordeum vulgare subsp. vulgare]

NP_001064708
115482229
Os10g0444700 [Oryza sativa Japonica Group]
0.845018

Oryza sativa Japonica Group
3119
4490

&gt:gi|75299854|sp|Q8H6G8.1|PHT18_ORYSJ

RecName: Full = Probable inorganic phosphate

transporter 1-8; Short = OsPT8; Short = OsPht1; 8;

AltName: Full = H(+)/Pi cotransporter

&gt:gi|23600468|gb|AAN39049.1|

putative phosphate transporter OsPT8

[Oryza sativa Japonica Group]

&gt:gi|31432353|gb|AAP53996.1|

phosphate: H+ symporter family protein, expressed

[Oryza sativa Japonica Group]

&gt:gi|78708737|gb|ABB47712.1|

phosphate: H+ symporter family protein, expressed

[Oryza sativa Japonica Group]

&gt:gi|113639317|dbj|BAF26622.1|

Os10g0444700 [Oryza sativa Japonica Group]

&gt:gi|125532137|gb|EAY78702.1|

hypothetical protein OsI_33803

[Oryza sativa Indica Group]

&gt:gi|125574950|gb|EAZ16234.1|

hypothetical protein OsJ_31686

[Oryza sativa Japonica Group]

531-548
NP_001151553
226497123
nucleolar protein, Nop52 containing
1

Zea mays

3120
4491

protein [Zea mays]

&gt:gi|195647654|gb|ACG43295.1|

nucleolar protein, Nop52 containing

protein [Zea mays]

NP_001168446
293336366
hypothetical protein LOC100382218 [Zea mays]
0.815742

Zea mays

3121
4492

&gt:gi|223948351|gb|ACN28259.1|

unknown [Zea mays]

AAL87179
19387261
unknown [Oryza sativa Japonica Group]
0.711986

Oryza sativa Japonica Group
3122
4493

&gt:gi|38346404|emb|CAE04237.2|

OSJNBa0011F23.10 [Oryza sativa Japonica Group]

&gt:gi|222629700|gb|EEE61832.1|

hypothetical protein OsJ_16477

[Oryza sativa Japonica Group]

NP_001054129
115461057
Os04g0658600 [Oryza sativa Japonica Group]
0.703041

Oryza sativa Japonica Group
3123
4494

&gt:gi|113565700|dbj|BAF16043.1|

Os04g0658600 [Oryza sativa Japonica Group]

CAH67793
116310844
OSIGBa0132E09-OSIGBa0108L24.7
0.70483

Oryza sativa Indica Group
3124
4495

[Oryza sativa Indica Group]

EAY95889
54362548
hypothetical protein OsI_17752
0.703041

Oryza sativa Indica Group
3125

[Oryza sativa Indica Group]

117-134
NP_001148391
226531629
nitrate-induced NOI protein [Zea mays]
1

Zea mays

3126
4496

&gt:gi|195618920|gb|ACG31290.1|

nitrate-induced NOI protein [Zea mays]

XP_002448552
242077231
hypothetical protein SORBIDRAFT_06g028920
0.858696

Sorghum bicolor

3127
4497

[Sorghum bicolor]

&gt:gi|241939735|gb|EES12880.1|

hypothetical protein SORBIDRAFT_06g028920

[Sorghum bicolor]

NP_001053908
115460615
Os04g0620600 [Oryza sativa Japonica Group]
0.717391

Oryza sativa Japonica Group
3128
4498

&gt:gi|38344338|emb|CAE02154.2|

OSJNBa0058K23.20 [Oryza sativa Japonica Group]

&gt:gi|113565479|dbj|BAF15822.1| Os04g0620600

[Oryza sativa Japonica Group]

&gt:gi|116309950|emb|CAH66981.1|

H0714H04.8 [Oryza sativa Indica Group]

&gt:gi|215768265|dbj|BAH00494.1|

unnamed protein product

[Oryza sativa Japonica Group]

986-1003
ACF84537
194700905
unknown [Zea mays]
1

Zea mays

3129
4499

AAM13441
20152972
similar to H. sapiens NNP-1/Nop52 AP001752
0.710909

Hordeum vulgare subsp. vulgare
3130
4500

(Score = 92; E = 9e−18)

[Hordeum vulgare subsp. vulgare]

3196-3213
XP_002443497
242086143
hypothetical protein SORBIDRAFT_08g020610
1

Sorghum bicolor

3131
4501

[Sorghum bicolor]

&gt:gi|241944190|gb|EES17335.1|

hypothetical protein SORBIDRAFT_08g020610

[Sorghum bicolor]

NP_001106067
239985666
H+-translocating pyrophosphatase
0.981227

Zea mays

3132
4502

[Zea mays]

&gt:gi|117622272|gb|ABK51382.1|

H+-translocating pyrophosphatase

[Zea mays]

EEC73348
54362548
hypothetical protein OsI_07556
0.946183

Oryza sativa Indica Group
3133

[Oryza sativa Indica Group]

NP_001047051
115446542
Os02g0537900 [Oryza sativa Japonica Group]
0.94368

Oryza sativa Japonica Group
3134
4503

&gt:gi|50251984|dbj|BAD27918.1|

putative vacuolar-type H+-translocating

inorganic pyrophosphatase

[Oryza sativa Japonica Group]

&gt:gi|50252660|dbj|BAD28829.1|

putative vacuolar-type H+-translocating

inorganic pyrophosphatase

[Oryza sativa Japonica Group]

&gt:gi|113536582|dbj|BAF08965.1|

Os02g0537900 [Oryza sativa Japonica Group]

&gt:gi|222623005|gb|EEE57137.1|

hypothetical protein OsJ_07039

[Oryza sativa Japonica Group]

BAJ95133
326500933
predicted protein
0.918648

Hordeum vulgare subsp. vulgare
3135
4504

[Hordeum vulgare subsp. vulgare]

Q9FWR2

RecName: Full = Pyrophosphate-energized
0.862328

Arabidopsis thaliana

3136

membrane proton pump 3;

AltName: Full = AVP1-like protein 2;

AltName: Full = Pyrophosphate-energized inorganic

pyrophosphatase 3; Short = H(+)-PPase 3

&gt:gi|9954727|gb|AAG09080.1|AC026237_1

Putative vacuolar-type H+-translocating

inorganic pyrophosphatase

[Arabidopsis thaliana]

NP_173122
334182630
Pyrophosphate-energized membrane proton
0.862328

Arabidopsis thaliana

3137
4505

pump 3 [Arabidopsis thaliana]

&gt:gi|332191375|gb|AEE29496.1|

Pyrophosphate-energized membrane proton

pump 3 [Arabidopsis thaliana]

XP_002265811
225443360
PREDICTED: hypothetical protein [Vitis vinifera]
0.87234

Vitis vinifera

3138
4506

&gt:gi|297735766|emb|CBI18453.3|

unnamed protein product [Vitis vinifera]

XP_002887762
297839760
vacuolar H+-pyrophosphatase 2
0.862328

Arabidopsis lyrata subsp. lyrata
3139
4507

[Arabidopsis lyrata subsp. lyrata]

&gt:gi|297333603|gb|EFH64021.1|

vacuolar H+-pyrophosphatase 2

[Arabidopsis lyrata subsp. lyrata]

NP_565195
145337727
pyrophosphate-energized membrane proton
0.85607

Arabidopsis thaliana

3140
4508

pump 2 [Arabidopsis thaliana]

&gt:gi|186496309lref|NP_001117619.1|

pyrophosphate-energized membrane proton

pump 2 [Arabidopsis thaliana]

&gt:gi|83287950|sp|Q56ZN6.2|AVP2_ARATH

RecName: Full = Pyrophosphate-energized

membrane proton pump 2;

AltName: Full = AVP1-like protein 1;

AltName: Full = Pyrophosphate-energized inorganic

pyrophosphatase 2; Short = H(+)-PPase 2;

AltName: Full = Vacuolar proton pyrophosphatase 2

&gt:gi|7024455|dbj|BAA92151.1|

vacuolar-pyrophosphatase like protein

[Arabidopsis thaliana]

&gt:gi|15450810|gb|AAK96676.1|

Similar to vacuolar H+-pyrophosphatase

[Arabidopsis thaliana]

&gt:gi|34098827|gb|AAQ56796.1|

At1g78920 [Arabidopsis thaliana]

&gt:gi|332198056|gb|AEE36177.1|

pyrophosphate-energized membrane proton

pump 2 [Arabidopsis thaliana]

&gt:gi|332198057|gb|AEE36178.1|

pyrophosphate-energized membrane proton

pump 2 [Arabidopsis thaliana]

Predicted
35-54
NP_001167652
293331418
hypothetical protein LOC100381282
1

Zea mays

3141
4509

siRNA

[Zea mays]

60533

&gt:gi|194708280|gb|ACF88224.1|

unknown [Zea mays]

NP_001060508
115473818
Os07g0656900 [Oryza sativa Japonica Group]
0.793451

Oryza sativa Japonica Group
3142
4510

&gt:gi|113612044|dbj|BAF22422.1|

Os07g0656900 [Oryza sativa Japonica Group]

EEE67734
54398660
hypothetical protein OsJ_25423
0.793451

Oryza sativa Japonica Group
3143

[Oryza sativa Japonica Group]

EEC82601
54362548
hypothetical protein OsI_27169
0.7733

Oryza sativa Indica Group
3144

[Oryza sativa Indica Group]

220-239
XP_002463867
242032944
hypothetical protein SORBIDRAFT_01g007880
1

Sorghum bicolor

3145
4511

[Sorghum bicolor]

&gt:gi|241917721|gb|EER90865.1|

hypothetical protein SORBIDRAFT_01g007880

[Sorghum bicolor]

ACL82964
223890398
glutathione transporter [Zea mays]
0.973226

Zea mays

3146
4512

AAQ91200
37362135
putative glutathione transporter
0.943775

Zea mays

3147
4513

[Zea mays]

BAK07444
326520370
predicted protein
0.907631

Hordeum vulgare subsp. vulgare
3148
4514

[Hordeum vulgare subsp. vulgare]

NP_001051290
115455378
Os03g0751100 [Oryza sativa Japonica Group]
0.89826

Oryza sativa Japonica Group
3149
4515

&gt:gi|40539006|gb|AAR87263.1|

putative oligopeptide transporter protein

[Oryza sativa Japonica Group]

&gt:gi|108711110|gb|ABF98905.1|

oligopeptide transporter 3, putative, expressed

[Oryza sativa Japonica Group]

&gt:gi|113549761|dbj|BAF13204.1|

Os03g0751100 [Oryza sativa Japonica Group]

&gt:gi|218193762|gb|EEC76189.1|

hypothetical protein OsI_13528

[Oryza sativa Indica Group]

&gt:gi|222625807|gb|EEE59939.1|

hypothetical protein OsJ_12589

[Oryza sativa Japonica Group]

ABF70152
102140012
oligopeptide transporter OPT
0.8166

Musa acuminata

3150
4516

family protein [Musa acuminata]

AAO32313
21070919
putative oligopeptide transporter protein
0.854083

Oryza sativa Japonica Group
3151
4517

[Oryza sativa Japonica Group]

O23482

RecName: Full = Oligopeptide transporter 3;
0.801874

Arabidopsis thaliana

3152

Short = AtOPT3

&gt:gi|25083021|gb|AAN72034.1|

isp4 like protein

[Arabidopsis thaliana]

AAK96781
15451019
Unknown protein [Arabidopsis thaliana]
0.800535

Arabidopsis thaliana

3153
4518

XP_002868139
297800509
hypothetical protein ARALYDRAFT_355122
0.801874

Arabidopsis lyrata subsp. lyrata
3154
4519

[Arabidopsis lyrata subsp. lyrata]

&gt:gi|297313975|gb|EFH44398.1|

hypothetical protein ARALYDRAFT_355122

[Arabidopsis lyrata subsp. lyrata]

1285-1304
ACR35065
238008059
unknown [Zea mays]
1

Zea mays

3155
4520

542-561
ACN29008
223949848
unknown [Zea mays]
1

Zea mays

3156
4521

NP_001147904
226502317
serine carboxypeptidase 1 [Zea mays]
0.996183

Zea mays

3157
4522

&gt:gi|195614482|gb|ACG29071.1|

serine carboxypeptidase 1 precursor

[Zea mays]

XP_002463311
242051133
hypothetical protein SORBIDRAFT_02g041610
0.902672

Sorghum bicolor

3158
4523

[Sorghum bicolor]

&gt:gi|241926688|gb|EER99832.1|

hypothetical protein SORBIDRAFT_02g041610

[Sorghum bicolor]

ACN26414
223944660
unknown [Zea mays]
0.877863

Zea mays

3159
4524

NP_001147829
226509933
LOC100281439 [Zea mays]
0.874046

Zea mays

3160
4525

&gt:gi|195613988|gb|ACG28824.1|

serine carboxypeptidase 1 precursor

[Zea mays]

BAC16131
50510131
putative serine carboxypeptidase II-3
0.736641

Oryza sativa Japonica Group
3161
4526

precursor [Oryza sativa Japonica Group]

BAJ94105
326490062
predicted protein
0.732824

Hordeum vulgare subsp. vulgare
3162
4527

[Hordeum vulgare subsp. vulgare]

P52711

RecName: Full = Serine carboxypeptidase II-3;
0.730916

Hordeum vulgare subsp. vulgare
3163

AltName: Full = CP-MIL3; Contains:

RecName: Full = Serine carboxypeptidase II-3

chain A; Contains:

RecName: Full = Serine carboxypeptidase

II-3 chain B; Flags: Precursor

&gt:gi|474392|emb|CAA55478.1|

serine carboxylase II-3

[Hordeum vulgare subsp. vulgare]

&gt:gi|619350|gb|AAB31589.1|

CP-MII.3 = serine carboxypeptidase

[Hordeum vulgare= barley, cv. Alexis,

aleurone, Peptide, 516 aa]

Predicted
161-182
NP_001044720
115440880
Os01g0834500 [Oryza sativa Japonica Group]
1

Oryza sativa Japonica Group
3164
4528

siRNA

&gt:gi|115456215|ref|NP_001051708.1|

60718

Os03g0818400 [Oryza sativa Japonica Group]

&gt:gi|297720551|ref|NP_001172637.1|

Os01g0834601 [Oryza sativa Japonica Group]

&gt:gi|313103637|pdb|3IZ6|L Chain L,

Localization Of The Small Subunit

Ribosomal Proteins Into A 5.5 A Cryo-Em

Map Of Triticum Aestivum Translating 80s Ribosome

&gt:gi|20805266|dbj|BAB92932.1|

putative 40s ribosomal protein S23

[Oryza sativa Japonica Group]

&gt:gi|20805267|dbj|BAB92933.1|

putative 40s ribosomal protein S23

[Oryza sativa Japonica Group]

&gt:gi|21671347|dbj|BAC02683.1|

putative 40s ribosomal protein S23

[Oryza sativa Japonica Group]

&gt:gi|21671348|dbj|BAC02684.1|

putative 40s ribosomal protein S23

[Oryza sativa Japonica Group]

&gt:gi|28876025|gb|AAO60034.1|

40S ribosomal protein S23

[Oryza sativa Japonica Group]

&gt:gi|29124115|gb|AAO65856.1|

40S ribosomal protein S23

[Oryza sativa Japonica Group]

&gt:gi|108711771|gb|ABF99566.1|

40S ribosomal protein S23, putative, expressed

[Oryza sativa Japonica Group]

&gt:gi|113534251|dbj|BAF06634.1|

Os01g0834500 [Oryza sativa Japonica Group]

&gt:gi|113550179|dbj|BAF13622.1|

Os03g0818400 [Oryza sativa Japonica Group]

&gt:gi|125528286|gb|EAY76400.1|

hypothetical protein OsI_04329

[Oryza sativa Indica Group]

&gt:gi|125546216|gb|EAY92355.1|

hypothetical protein OsI_14082

[Oryza sativa Indica Group]

&gt:gi|215697420|dbj|BAG91414.1|

unnamed protein product

[Oryza sativa Japonica Group]

&gt:gi|215734943|dbj|BAG95665.1|

unnamed protein product

[Oryza sativa Japonica Group]

&gt:gi|255673847|dbj|BAH91367.1|

Os01g0834601 [Oryza sativa Japonica Group]

&gt:gi|326501134|dbj|BAJ98798.1|

predicted protein

[Hordeum vulgare subsp. vulgare]

&gt:gi|326506086|dbj|BAJ91282.1|

predicted protein

[Hordeum vulgare subsp. vulgare]

NP_001131287
212722729
hypothetical protein LOC100192600
0.992958

Zea mays

3165
4529

[Zea mays]

&gt:gi|242032479|ref|XP_002463634.1|

hypothetical protein SORBIDRAFT_01g003410

[Sorghum bicolor]

&gt:gi|242059153|ref|XP_002458722.1|

hypothetical protein SORBIDRAFT_03g039010

[Sorghum bicolor]

&gt:gi|242090801|ref|XP_002441233.1|

hypothetical protein SORBIDRAFT_09g022840

[Sorghum bicolor]

&gt:gi|194691088|gb|ACF79628.1|

unknown [Zea mays]

&gt:gi|194697612|gb|ACF82890.1|

unknown [Zea mays]

&gt:gi|194702740|gb|ACF85454.1|

unknown [Zea mays]

&gt:gi|195606082|gb|ACG24871.1|

40S ribosomal protein S23

[Zea mays]

&gt:gi|195618728|gb|ACG31194.1|

40S ribosomal protein S23

[Zea mays]

&gt:gi|195619636|gb|ACG31648.1|

40S ribosomal protein S23

[Zea mays]

&gt:gi|195625318|gb|ACG34489.1|

40S ribosomal protein S23

[Zea mays]

&gt:gi|195628702|gb|ACG36181.1|

40S ribosomal protein S23

[Zea mays]

&gt:gi|195657679|gb|ACG48307.1|

40S ribosomal protein S23

[Zea mays]

&gt:gi|238012290|gb|ACR37180.1|

unknown [Zea mays]

&gt:gi|241917488|gb|EER90632.1|

hypothetical protein SORBIDRAFT_01g003410

[Sorghum bicolor]

&gt:gi|241930697|gb|EES03842.1|

hypothetical protein SORBIDRAFT_03g039010

[Sorghum bicolor]

&gt:gi|241946518|gb|EES19663.1|

hypothetical protein SORBIDRAFT_09g022840

[Sorghum bicolor]

ACG32843
195622025
40S ribosomal protein S23
0. 985915

Zea mays

3166
4530

[Zea mays]

ACF06518
192910819
40S ribosomal protein S23
0.978873

Elaeis guineensis

3167
4531

[Elaeis guineensis]

&gt:gi|192910894|gb|ACF06555.1|

40S ribosomal protein S23

[Elaeis guineensis]

ACF06519
192910821
40S ribosomal protein S23
0.971831

Elaeis guineensis

3168
4532

[Elaeis guineensis]

ABBl6993
77999292
unknown [Solanum tuberosum]
0.964789

Solanum tuberosum

3169
4533

XP_002523902
255565825
40S ribosomal protein S23, putative
0.964789

Ricinus communis

3170
4534

[Ricinus communis]

&gt:gi|255568414|ref|XP_002525181.1|

40S ribosomal protein S23, putative

[Ricinus communis]

&gt:gi|223535478|gb|EEF37147.1|

40S ribosomal protein S23, putative

[Ricinus communis]

&gt:gi|223536832|gb|EEF38471.1|

40S ribosomal protein S23, putative

[Ricinus communis]

XP_002279025
225439887
PREDICTED: hypothetical protein
0.964789

Vitis vinifera

3171
4535

[Vitis vinifera]

Predicted
658-679
NP_001131832
212724035
hypothetical protein LOC100193207
1

Zea mays

3172
4536

siRNA

[Zea mays]

60742

&gt:gi|194692668|gb|ACF80418.1|

unknown [Zea mays]

XP_002455284
242052276
hypothetical protein SORBIDRAFT_03g007780
0.745562

Sorghum bicolor

3173
4537

[Sorghum bicolor]

&gt:gi|241927259|gb|EES00404.1|

hypothetical protein SORBIDRAFT_03g007780

[Sorghum bicolor]

1293-1314
XP_002451722
242060865
hypothetical protein SORBIDRAFT_04g006610
1

Sorghum bicolor

3174
4538

[Sorghum bicolor]

&gt:gi|241931553|gb|EES04698.1|

hypothetical protein SORBIDRAFT_04g006610

[Sorghum bicolor]

Predicted
437-454
NP_001145763
226491569
hypothetical protein LOC100279270
1

Zea mays

3175
4539

siRNA

[Zea mays]

60833

&gt:gi|219884277|gb|ACL52513.1|

unknown [Zea mays]

&gt:gi|219884335|gb|ACL52542.1|

unknown [Zea mays]

&gt:gi|224028501|gb|ACN33326.1|

unknown [Zea mays]

NP_001054556
115461912
Os05g0132100 [Oryza sativa Japonica Group]
0.828358

Oryza sativa Japonica Group
3176
4540

&gt:gi|113578107|dbj|BAF16470.1|

Os05g0132100 [Oryza sativa Japonica Group]

&gt:gi|222630090|gb|EEE62222.1|

hypothetical protein OsJ_17009

[Oryza sativa Japonica Group]

EEC78466
54362548
hypothetical protein OsI_18335
0.810448

Oryza sativa Indica Group
3177

[Oryza sativa Indica Group]

BAG97315
32990827
unnamed protein product
0.753731

Oryza sativa Japonica Group
3178
4541

[Oryza sativa Japonica Group]

1660-1677
XP_002456424
242054556
hypothetical protein SORBIDRAFT_03g036030
1

Sorghum bicolor

3179
4542

[Sorghum bicolor]

&gt:gi|241928399|gb|EES01544.1|

hypothetical protein SORBIDRAFT_03g036030

[Sorghum bicolor]

NP_001142208
226496106
hypothetical protein LOC100274376
0.987903

Zea mays

3180
4543

[Zea mays]

&gt:gi|194702286|gb|ACF85227.1|

unknown [Zea mays]

&gt:gi|194707600|gb|ACF87884.1|

unknown [Zea mays]

NP_001044395
115440230
Os01g0772800 [Oryza sativa Japonica Group]
0.947581

Oryza sativa Japonica Group
3181
4544

&gt:gi|20160917|dbj|BAB89854.1|

putative signal recognition particle 54 kD protein

[Oryza sativa Japonica Group]

&gt:gi|21743252|dbj|BAC03250.1|

putative signal recognition particle 54 kD protein

[Oryza sativa Japonica Group]

&gt:gi|32879776|dbj|BAC79360.1|

signal recognition particle 54 kDa subunit

[Oryza sativa Japonica Group]

&gt:gi|113533926|dbj|BAF06309.1|

Os01g0772800 [Oryza sativa Japonica Group]

&gt:gi|215767979|dbj|BAH00208.1|

unnamed protein product

[Oryza sativa Japonica Group]

&gt:gi|222619331|gb|EEE55463.1|

hypothetical protein OsJ_03626

[Oryza sativa Japonica Group]

EEC71559
54362548
hypothetical protein OsI_03915
0.945565

Oryza sativa Indica Group
3182

[Oryza sativa Indica Group]

XP_002517663
255553240
signal recognition particle 54 kD protein, putative
0.905242

Ricinus communis

3183
4545

[Ricinus communis]

&gt:gi|223543295|gb|EEF44827.1|

signal recognition particle 54 kD protein, putative

[Ricinus communis]

XP_002299799
224059269
predicted protein [Populus trichocarpa]
0.887097

Populus trichocarpa

3184
4546

&gt:gi|222847057|gb|EEE84604.1|

predicted protein [Populus trichocarpa]

XP_002264159
225442909
PREDICTED: hypothetical protein
0.887097

Vitis vinifera

3185
4547

[Vitis vinifera]

XP_002322968
224139051
predicted protein [Populus trichocarpa]
0.893145

Populus trichocarpa

3186
4548

&gt:gi|222867598|gb|EEF04729.1|

predicted protein [Populus trichocarpa]

ABK95819
118487995
unknown [Populus trichocarpa]
0.885081

Populus trichocarpa

3187
4549

1015-1032
XP_002466942
242039094
hypothetical protein SORBIDRAFT_01g017160
1

Sorghum bicolor

3188
4550

[Sorghum bicolor]

&gt:gi|241920796|gb|EER93940.1|

hypothetical protein SORBIDRAFT_01g017160

[Sorghum bicolor]

NP_001146067
226501573
hypothetical protein LOC100279598
0.925144

Zea mays

3189
4551

[Zea mays]

&gt:gi|224030981|gb|ACN34566.1|

unknown [Zea mays]

ACG47544
195656152
transposon protein [Zea mays]
0.932821

Zea mays

3190
4552

XP_002466943
242039096
hypothetical protein SORBIDRAFT_01g017170
0.815739

Sorghum bicolor

3191
4553

[Sorghum bicolor]

&gt:gi|241920797|gb|EER93941.1|

hypothetical protein SORBIDRAFT_01g017170

[Sorghum bicolor]

BAJ94552
326494865
predicted protein
0.761996

Hordeum vulgare subsp. vulgare
3192
4554

[Hordeum vulgare subsp. vulgare]

NP_001065056
115482925
Os10g0515200 [Oryza sativa Japonica Group]
0.740883

Oryza sativa Japonica Group
3193
4555

&gt:gi|10140669|gb|AAG13504.1|AC068924_9

putative cytochrome P450

[Oryza sativa Japonica Group]

&gt:gi|31433051|gb|AAP54611.1|

transposon protein, putative, unclassified, expressed

[Oryza sativa Japonica Group]

&gt:gi|113639665|dbj|BAF26970.1|

Os10g0515200 [Oryza sativa Japonica Group]

&gt:gi|215740677|dbj|BAG97333.1|

unnamed protein product

[Oryza sativa Japonica Group]

EAY79199
54362548
hypothetical protein OsI_34311
0.735125

Oryza sativa Indica Group
3194

[Oryza sativa Indica Group]

BAK03964
326520078
predicted protein
0.737044

Hordeum vulgare subsp. vulgare
3195
4556

[Hordeum vulgare subsp. vulgare]

BAJ93808
326488278
predicted protein
0.723608

Hordeum vulgare subsp. vulgare
3196
4557

[Hordeum vulgare subsp. vulgare]

14111-428
XP_002448742
242077611
hypothetical protein SORBIDRAFT_06g032450
1

Sorghum bicolor

3197
4558

[Sorghum bicolor]

&gt:gi|241939925|gb|EES13070.1|

hypothetical protein SORBIDRAFT_06g032450

[Sorghum bicolor]

ACF78749
238908545
unknown [Zea mays]
0.969199

Zea mays

3198
4559

&gt:gi|194707726|gb|ACF87947.1|

unknown [Zea mays]

&gt:gi|195611472|gb|ACG27566.1|

lysine-specific histone demethylase 1

[Zea mays]

&gt:gi|195616900|gb|ACG30280.1|

lysine-specific histone demethylase 1

[Zea mays]

&gt:gi|223950041|gb|ACN29104.1|

unknown [Zea mays]

&gt:gi|224031369|gb|ACN34760.1|

unknown [Zea mays]

NP_001054218
115461235
Os04g0671200 [Oryza sativa Japonica Group]
0.905544

Oryza sativa Japonica Group
3199
4560

&gt:gi|32488409|emb|CAE02834.1|

OSJNBa0043A12.39 [Oryza sativa Japonica Group]

&gt:gi|90265248|emb|CAH67701.1|

H0624F09.9 [Oryza sativa Indica Group]

&gt:gi|113565789|dbj|BAF16132.1|

Os04g0671200 [Oryza sativa Japonica Group]

&gt:gi|125550177|gb|EAY95999.1|

hypothetical protein OsI_17870

[Oryza sativa Indica Group]

&gt:gi|125592017|gb|EAZ32367.1|

hypothetical protein OsJ_16578

[Oryza sativa Japonica Group]

XP_002448744
242077615
hypothetical protein SORBIDRAFT_06g032460
0.7577

Sorghum bicolor

3200
4561

[Sorghum bicolor]

&gt:gi|241939927|gb|EES13072.1|

hypothetical protein SORBIDRAFT_06g032460

[Sorghum bicolor]

NP_001054219
115461237
Os04g0671300 [Oryza sativa Japonica Group]
0.75154

Oryza sativa Japonica Group
3201
4562

&gt:gi|90265249|emb|CAH67702.1|

H0624F09.10 [Oryza sativa Indica Group]

&gt:gi|113565790|dbj|BAF16133.1|

Os04g0671300 [Oryza sativa Japonica Group]

&gt:gi|215704120|dbj|BAG92960.1|

unnamed protein product

[Oryza sativa Japonica Group]

&gt:gi|218195801|gb|EEC78228.1|

hypothetical protein OsI_17871

[Oryza sativa Indica Group]

&gt:gi|222629752|gb|EEE61884.1|

hypothetical protein OsJ_16579

[Oryza sativa Japonica Group]

CAE03599
70663936
OSJNBb0004A17.1 [Oryza sativa Japonica Group]
0.74538

Oryza sativa Japonica Group
3202
4563

NP_001170164
293332860
hypothetical protein LOC100384102
0.743326

Zea mays

3203
4564

[Zea mays]

&gt:gi|195613858|gb|ACG28759.1|

lysine-specific histone demethylase 1

[Zea mays]

ACG29077
195614493
lysine-specific histone demethylase 1
0.73922

Zea mays

3204
4565

[Zea mays]

ACN36050
224033948
unknown [Zea mays]
0.741273

Zea mays

3205
4566

1657-1674
NP_001183903
308080099
hypothetical protein LOC100502496
1

Zea mays

3206
4567

[Zea mays]

&gt:gi|238015356|gb|ACR38713.1|

unknown [Zea mays]

462-479
XP_002467261
242039732
hypothetical protein SORBIDRAFT_01g022230
1

Sorghum bicolor

3207
4568

[Sorghum bicolor]

&gt:gi|24192115|gb|EER94259.1|

hypothetical protein SORBIDRAFT_01g022230

[Sorghum bicolor]

NP_001150190
226490935
PP2Ac-4 - Phosphatase 2A isoform 4 belonging
0.984127

Zea mays

3208
4569

to family 2 [Zea mays]

&gt:gi|195637426|gb|ACG38181.1|

PP2Ac-4 -Phosphatase 2A isoform 4 belonging

to family 2 [Zea mays]

XP_002465801
242036812
hypothetical protein SORBIDRAFT_01g046020
0.942857

Sorghum bicolor

3209
4570

[Sorghum bicolor]

&gt:gi|241919655|gb|EER92799.1|

hypothetical protein SORBIDRAFT_01g046020

[Sorghum bicolor]

ACG34764
195625867
PP2Ac-5 - Phosphatase 2A isoform 5 belonging
0.939683

Zea mays

3210
4571

to family 2 [Zea mays]

P0C5D7

RecName: Full = Putative serine/threonine-protein
0.942857

Oryza sativa Indica Group
3211

phosphatase PP2A-4 catalytic subunit

&gt:gi|5714762|gb|AAD48068.1|AF173881_1

serine/threonine protein phosphatase PP2A-4 catalytic subunit

[Oryza sativa Indica Group]

NP_001130096
212274514
hypothetical protein LOC100191189
0.936508

Zea mays

3212
4572

[Zea mays]

&gt:gi|194688278|gb|ACF78223.1|

unknown [Zea mays]

ABOl6371
126517971
serine/threonine-protein phosphatase PP2A-1 catalytic subunit
0.936508

Triticum aestivum

3213
4573

[Triticum aestivum]

NP_001149212
226495576
PP2Ac-5 - Phosphatase 2A isoform 5 belonging
0.933333

Zea mays

3214
4574

to family 2 [Zea mays]

&gt:gi|195625500|gb|ACG34580.1|

PP2Ac-5 - Phosphatase 2A isoform 5 belonging

to family 2 [Zea mays]

NP_001049084
115450966
Os03g0167700 [Oryza sativa Japonica Group]
0.92381

Oryza sativa Japonica Group
3215
4575

&gt:gi|108706380|gb|ABF94175.1|

Serine/threonine protein phosphatase

PP2A-4 catalytic subunit, putative, expressed

[Oryza sativa Japonica Group]

&gt:gi|113547555|dbj|BAF10998.1|

Os03g0167700 [Oryza sativa Japonica Group]

&gt:gi|215697662|dbj|BAG91656.1|

unnamed protein product

[Oryza sativa Japonica Group]

&gt:gi|215701359|dbj|BAG92783.1|

unnamed protein product

[Oryza sativa Japonica Group]

1228-1245
AAL75481
46200524
putative TNP2 [Zea mays]
1

Zea mays

3216
4576

735-752
NP_001130504
212275861
hypothetical protein LOC100191603
1

Zea mays

3217
4577

[Zea mays]

&gt:gi|195616620|gb|ACG30140.1|

lysine-specific histone demethylase 1

[Zea mays]

114-131
XP_002447908
242075943
hypothetical protein SORBIDRAFT_06g017770
1

Sorghum bicolor

3218
4578

[Sorghum bicolor]

&gt:gi|241939091|gb|EES12236.1|

hypothetical protein SORBIDRAFT_06g017770

[Sorghum bicolor]

NP_001105527
162461261
barley mlo defense gene homolog3 [Zea mays]
0.916667

Zea mays

3219
4579

&gt:gi|13784979|gb|AAK38339.1|

seven transmembrane protein Mlo3

[Zea mays]

EAY94273
54362548
hypothetical protein OsI_16042
0.702381

Oryza sativa Indica Group
3220

[Oryza sativa Indica Group]

CAD40974
32482917
OSJNBa0027P08.3 [Oryza sativa Japonica Group]
0.702381

Oryza sativa Japonica Group
3221
4580

&gt:gi|21742880|emb|CAD41046.1|

OSJNBa0058G03.6 [Oryza sativa Japonica Group]

&gt:gi|125590510|gb|EAZ30860.1|

hypothetical protein OsJ_14932

[Oryza sativa Japonica Group]

361-378
XP_002442895
242084939
hypothetical protein SORBIDRAFT_08g004520
1

Sorghum bicolor

3222
4581

[Sorghum bicolor]

&gt:gi|241943588|gb|EES16733.1|

hypothetical protein SORBIDRAFT_08g004520

[Sorghum bicolor]

ACN36368
224034584
unknown [Zea mays]
0.769231

Zea mays

3223
4582

NP_001152351
226496368
bile acid sodium symporter/transporter
0.764268

Zea mays

3224
4583

[Zea mays]

&gt:gi|195655405|gb|ACG47170.1|

bile acid sodium symporter/transporter

[Zea mays]

ABA96556
108862058
Sodium Bile acid symporter family protein, expressed
0.722084

Oryza sativa Japonica Group
3225
4584

[Oryza sativa Japonica Group]

680-697
NP_001048539
115449732
Os02g0820000 [Oryza sativa Japonica Group]
1

Oryza sativa Japonica Group
3226
4585

&gt:gi|113538070|dbj|BAF10453.1|

Os02g0820000 [Oryza sativa Japonica Group]

AAK64283
14495345
protein phosphatase [Oryza sativa]
0.921283

Oryza sativa

3227
4586

&gt:gi|48716362|dbj|BAD22973.1| protein

phosphatase [Oryza sativa Japonica Group]

&gt:gi|48716497|dbj|BAD23102.1| protein

phosphatase [Oryza sativa Japonica Group]

&gt:gi|215767785|dbj|BAH00014.1| unnamed protein

product [Oryza sativa Japonica Group]

&gt:gi|218191835|gb|EEC74262.1|

hypothetical protein OsI_09476

[Oryza sativa Indica Group]

&gt:gi|222623927|gb|EEE58059.1|

hypothetical protein OsJ_08899

[Oryza sativa Japonica Group]

NP_001105341
162462901
serine/threonine-protein phosphatase
0.868805

Zea mays

3228
4587

PP1 [Zea mays]

&gt:gi|130709|sp|P22198.1|PP1_MAIZE

RecName: Full = Serine/threonine-protein phosphatase PP1

&gt:gi|168723|gb|AAA33545.1|

protein phosphatase-1 [Zea mays]

&gt:gi|223944929|gb|ACN26548.1|

unknown [Zea mays]

&gt:gi|445586|prf||1909338A

protein phosphatase 1

XP_002521968
255561918
serine/threonine protein phosphatase, putative
0.784257

Ricinus communis

3229
4588

[Ricinus communis]

&gt:gi|223538772|gb|EEF40372.1|

serine/threonine protein phosphatase, putative

[Ricinus communis]

XP_002265552
225453025
PREDICTED: hypothetical protein
0.781341

Vitis vinifera

3230
4589

[Vitis vinifera]

CAN71489
147842159
hypothetical protein VITISV_005340
0.781341

Vitis vinifera

3231

[Vitis vinifera]

ACU24610
255648313
unknown [Glycine max]
0.790087

Glycine max

3232
4590

XP_002319103
224123531
predicted protein [Populus trichocarpa]
0.769679

Populus trichocarpa

3233
4591

&gt:gi|222857479|gb|EEE95026.1|

predicted protein [Populus trichocarpa]

103-120
NP_001168450
293331506
hypothetical protein LOC100382223
1

Zea mays

3234
4592

[Zea mays]

&gt:gi|223948377|gb|ACN28272.1|

unknown [Zea mays]

NP_001142379
226504555
hypothetical protein LOC100274552
0.911688

Zea mays

3235
4593

[Zea mays]

&gt:gi|194708552|gb|ACF88360.1|

unknown [Zea mays]

XP_002438780
242096579
hypothetical protein SORBIDRAFT_10g026080
0.901299

Sorghum bicolor

3236
4594

[Sorghum bicolor]

&gt:gi|241917003|gb|EER90147.1|

hypothetical protein SORBIDRAFT_10g026080

[Sorghum bicolor]

BAJ93429
326528494
predicted protein
0.823377

Hordeum vulgare subsp. vulgare
3237
4595

[Hordeum vulgare subsp. vulgare]

NP_001058250
115469301
Os06g0655500 [Oryza sativa Japonica Group]
0.820779

Oryza sativa Japonica Group
3238
4596

&gt:gi|51535613|dbj|BAD37556.1|

kelch repeat containing F-box protein-like

[Oryza sativa Japonica Group]

&gt:gi|51536380|dbj|BAD37573.1|

kelch repeat containing F-box protein-like

[Oryza sativa Japonica Group]

&gt:gi|113596290|dbj|BAF20164.1|

Os06g0655500 [Oryza sativa Japonica Group]

&gt:gi|215697408|dbj|BAG91402.1|

unnamed protein product

[Oryza sativa Japonica Group]

698-715
NP_001149387
226496780
LOC100283013 [Zea mays]
1

Zea mays

3239
4597

&gt:gi|195626870|gb|ACG35265.1| serine/threonine-

protein phosphatase PP1 [Zea mays]

175-192
ACG35262
195626863
seed specific protein Bn15D17A [Zea mays]
1

Zea mays

3240
4598

NP_001148471
226528520
seed specific protein Bn15D17A [Zea mays]
0.98722

Zea mays

3241
4599

&gt:gi|195619590|gb|ACG31625.1|

seed specific protein Bn15D17A [Zea mays]

XP_002441388
242091110
hypothetical protein SORBIDRAFT_09g025710
0.817891

Sorghum bicolor

3242
4600

[Sorghum bicolor]

&gt:gi|241946673|gb|EES19818.1|

hypothetical protein SORBIDRAFT_09g025710

[Sorghum bicolor]

542-559
NP_001105206
162459735
SET domain protein SDG117 [Zea mays]
1

Zea mays

3243
4601

&gt:gi|28261315|gb|AAO32935.1|

SET domain protein SDG117 [Zea mays]

258-275
NP_001064578
115481969
Os10g0410600 [Oryza sativa Japonica Group]
1

Oryza sativa Japonica Group
3244
4602

&gt:gi|158513707|sp|A3C4N5.2|PP2A4_ORYSJ

RecName: Full = Serine/threonine-protein phosphatase

PP2A-4 catalytic subunit

&gt:gi|78708615|gb|ABB47590.1|

Serine/threonine protein phosphatase

PP2A-4 catalytic subunit, putative, expressed

[Oryza sativa Japonica Group]

&gt:gi|113639187|dbj|BAF26492.1|

Os10g0410600 [Oryza sativa Japonica Group]

&gt:gi|215704585|dbj|BAG94218.1|

unnamed protein product

[Oryza sativa Japonica Group]

&gt:gi|222612811|gb|EEE50943.1|

hypothetical protein OsJ_31490

[Oryza sativa Japonica Group]

162-179
BAJ85175
326493427
predicted protein
1

Hordeum vulgare subsp. vulgare
3245
4603

[Hordeum vulgare subsp. vulgare]

&gt:gi|326500666|dbj|BAJ94999.1|

predicted protein

[Hordeum vulgare subsp. vulgare]

&gt:gi|326513058|dbj|BAK03436.1|

predicted protein

[Hordeum vulgare subsp. vulgare]

BAF31132
114213457
catalytic subunit of protein
0.8375

Vicia faba

3246
4604

phosphatase 1 [Vicia faba]

NP_001049669
115452136
Os03g0268000 [Oryza sativa Japonica Group]
0.80625

Oryza sativa Japonica Group
3247
4605

&gt:gi|108935873|sp|P48489.2|PP1_ORYSJ

RecName: Full = Serine/threonine-protein phosphatase

PP1 &gt:gi|108707369|gb|ABF95164.1|

Serine/threonine protein phosphatase PP1, putative,

expressed [Oryza sativa Japonica Group]

&gt:gi|108707370|gb|ABF95165.1|

Serine/threonine protein phosphatase PP1, putative,

expressed [Oryza sativa Japonica Group]

&gt:gi|108707371|gb|ABF95166.1|

Serine/threonine protein phosphatase PP1, putative,

expressed [Oryza sativa Japonica Group]

&gt:gi|113548140|dbj|BAF11583.1|

Os03g0268000 [Oryza sativa Japonica Group]

&gt:gi|215706450|dbj|BAG93306.1|

unnamed protein

product [Oryza sativa Japonica Group]

Predicted
2333-2353
NP_001106014
162459693
starch synthase IIb-2 precursor
1

Zea mays

3248
4606

siRNA

[Zea mays]

61212

&gt:gi|145202746|gb|ABP35814.1|

starch synthase IIb-2 precursor

[Zea mays]

ACC86845
186695419
starch synthase IIb precursor
0.880682

Sorghum bicolor

3249
4607

[Sorghum bicolor]

ACN31779
223975182
unknown [Zea mays]
0.87642

Zea mays

3250
4608

NP_001104880
162463587
starch synthase homolog1 [Zea mays]
0.872159

Zea mays

3251
4609

&gt:gi|2655031|gb|AAD13342.1|

starch synthase isoform zSTSII-2

[Zea mays]

Q6Z2T8

RecName: Full = Soluble starch synthase 2-2,
0.764205

Oryza sativa Japonica Group
3252

chloroplastic/amyloplastic;

AltName: Full = Soluble starch synthase II-2;

Flags: Precursor

&gt:gi|262345641|gb|ACY56184.1|

soluble starch synthase II-2

[Oryza sativa Japonica Group]

&gt:gi|262345643|gb|ACY56185.1|

soluble starch synthase II-2

[Oryza sativa Japonica Group]

&gt:gi|262345645|gb|ACY56186.1|

soluble starch synthase II-2

[Oryza sativa Japonica Group]

&gt:gi|262345647|gb|ACY56187.1|

soluble starch synthase II-2

[Oryza sativa Japonica Group]

&gt:gi|262345649|gb|ACY56188.1|

soluble starch synthase II-2

[Oryza sativa Japonica Group]

&gt:gi|262345651|gb|ACY56189.1|

soluble starch synthase II-2

[Oryza sativa Japonica Group]

EEC73999
54362548
hypothetical protein OsI_08916
0.762784

Oryza sativa Indica Group
3253

[Oryza sativa Indica Group]

&gt:gi|262345653|gb|ACY56190.1|

soluble starch synthase II-2

[Oryza sativa Indica Group]

&gt:gi|262345655|gb|ACY56191.1|

soluble starch synthase II-2

[Oryza sativa Indica Group]

&gt:gi|262345657|gb|ACY56192.1|

soluble starch synthase II-2

[Oryza sativa Indica Group]

&gt:gi|262345659|gb|ACY56193.1|

soluble starch synthase II-2

[Oryza sativa Indica Group]

&gt:gi|262345661|gb|ACY56194.1|

soluble starch synthase II-2

[Oryza sativa Indica Group]

&gt:gi|262345665|gb|ACY56196.1|

soluble starch synthase II-2

[Oryza sativa Indica Group]

&gt:gi|262345667|gb|ACY56197.1|

soluble starch synthase II-2

[Oryza sativa Indica Group]

NP_001048104
115448648
Os02g0744700 [Oryza sativa Japonica Group]
0.75

Oryza sativa Japonica Group
3254
4610

&gt:gi|113537635|dbj|BAF10018.1|

Os02g0744700 [Oryza sativa Japonica Group]

ACY56195
262345662
soluble starch synthase II-2
0.761364

Oryza sativa Indica Group
3255
4611

[Oryza sativa Indica Group]

AAK81729
15028466
soluble starch synthase II-2
0.761364

Oryza sativa

3256
4612

[Oryza sativa]

2530-2550
XP_002452556
242062533
hypothetical protein SORBIDRAFT_04g028060
1

Sorghum bicolor

3257
4613

[Sorghum bicolor]

&gt:gi|241932387|gb|EES05532.1|

hypothetical protein SORBIDRAFT_04g028060

[Sorghum bicolor]

Predicted
854-874
BAJ91900
326511510
predicted protein
1

Hordeum vulgare subsp. vulgare
3258
4614

zma

[Hordeum vulgare subsp. vulgare]

mir

48327

BAD52695
14164403
putative protein kinase PK12
0.854415

Oryza sativa Japonica Group
3259
4615

[Oryza sativa Japonica Group]

&gt:gi|215694659|dbj|BAG89850.1|

unnamed protein product

[Oryza sativa Japonica Group]

&gt:gi|222618771|gb|EEE54903.1|

hypothetical protein OsJ_02427

[Oryza sativa Japonica Group]

ACG35326
195626991
serine/threonine-protein kinase
0.844869

Zea mays

3260
4616

AFC3 [Zea mays]

ACR34364
238006657
unknown [Zea mays]
0.844869

Zea mays

3261
4617

ACN28994
223949820
unknown [Zea mays]
0.837709

Zea mays

3262
4618

NP_001043452
115438077
Os01g0590900 [Oryza sativa Japonica Group]
0.837709

Oryza sativa Japonica Group
3263
4619

&gt:gi|113532983|dbj|BAF05366.1|

Os01g0590900 [Oryza sativa Japonica Group]

BAJ98839
326501215
predicted protein
0.768496

Hordeum vulgare subsp. vulgare
3264
4620

[Hordeum vulgare subsp. vulgare]

XP_002455867
242053442
hypothetical protein SORBIDRAFT_03g026540
0.708831

Sorghum bicolor

3265
4621

[Sorghum bicolor]

&gt:gi|241927842|gb|EES00987.1|

hypothetical protein SORBIDRAFT_03g026540

[Sorghum bicolor]

XP_002308625
224089073
predicted protein [Populus trichocarpa]
0.71599

Populus trichocarpa

3266
4622

&gt:gi|222854601|gb|EEE92148.1|

predicted protein [Populus trichocarpa]

368-388
XP_002456429
242054566
hypothetical protein SORBIDRAFT_03g036130
1

Sorghum bicolor

3267
4623

[Sorghum bicolor]

&gt:gi|241928404|gb|EES01549.1|

hypothetical protein SORBIDRAFT_03g036130

[Sorghum bicolor]

NP_001146289
226499967
hypothetical protein LOC100279864 [Zea mays]
0.812362

Zea mays

3268
4624

&gt:gi|219886519|gb|ACL53634.1|

unknown [Zea mays]

946-966
EEC70991
54362548
hypothetical protein OsI_02649
1

Oryza sativa Indica Group
3269

[Oryza sativa Indica Group]

Predicted
179-200
BAK06079
326499176
predicted protein
1

Hordeum vulgare subsp. vulgare
3270
4625

zma

[Hordeum vulgare subsp. vulgare]

mir

48479

NP_001140935
226492610
hypothetical protein LOC100273013 [Zea mays]
0.860399

Zea mays

3271
4626

&gt:gi|194701826|gb|ACF84997.1|

unknown [Zea mays]

&gt:gi|194703532|gb|ACF85850.1|

unknown [Zea mays]

NP_001051729
115456256
Os03g0821800 [Oryza sativa Japonica Group]
0.874644

Oryza sativa Japonica Group
3272
4627

&gt:gi|108711803|gb|ABF99598.1|

glycosyl transferase, group 2 family protein, expressed

[Oryza sativa Japonica Group]

&gt:gi|113550200|dbj|BAF13643.1|

Os03g0821800 [Oryza sativa Japonica Group]

&gt:gi|215717119|dbj|BAG95482.1| unnamed

protein product [Oryza sativa Japonica Group]

&gt:gi|222626064|gb|EEE60196.1|

hypothetical protein OsJ_13154

[Oryza sativa Japonica Group]

AAO18453
24899477
putative dolichyl-phosphate beta-glucosyltransferase
0.794872

Oryza sativa Japonica Group
3273
4628

[Oryza sativa Japonica Group]

467-488
ACN31661
223974946
unknown [Zea mays]
1

Zea mays

3274
4629

NP_001142978
226498261
hypothetical protein LOC100275432 [Zea mays]
0.972387

Zea mays

3275
4630

&gt:gi|195612426|gb|ACG28043.1|

hypothetical protein [Zea mays]

XP_002458459
242058626
hypothetical protein SORBIDRAFT_03g034030
0.767258

Sorghum bicolor

3276
4631

[Sorghum bicolor]

&gt:gi|241930434|gb|EES03579.1|

hypothetical protein SORBIDRAFT_03g034030

[Sorghum bicolor]

114-135
ACG40719
195642501
alpha-taxilin [Zea mays]
1

Zea mays

3277
4632

NP_001132592
212722627
hypothetical protein LOC100194064 [Zea mays]
0.99763

Zea mays

3278
4633

&gt:gi|194694846|gb|ACF81507.1|

unknown [Zea mays]

XP_002468045
242041300
hypothetical protein SORBIDRAFT_01g038590
0.890995

Sorghum bicolor

3279
4634

[Sorghum bicolor]

&gt:gi|241921899|gb|EER95043.1|

hypothetical protein SORBIDRAFT_01g038590

[Sorghum bicolor]

NP_001141235
226500461
hypothetical protein LOC100273322
0.869668

Zea mays

3280
4635

[Zea mays]

&gt:gi|194703420|gb|ACF85794.1|

unknown [Zea mays]

ACN28388
223948608
unknown [Zea mays]
0.872038

Zea mays

3281
4636

ACL54606
219888462
unknown [Zea mays]
0.869668

Zea mays

3282
4637

ACG42375
195645813
alpha-taxilin [Zea mays]
0.834123

Zea mays

3283
4638

192-213
EEC76428
54362548
hypothetical protein OsI_14108
1

Oryza sativa Indica Group
3284

[Oryza sativa Indica Group]

Predicted
254-275
XP_002458718
242059144
hypothetical protein SORBIDRAFT_03g038910
1

Sorghum bicolor

3285
4639

zma

[Sorghum bicolor]

mir

&gt:gi|241930693|gb|EES03838.1|

48482

hypothetical protein SORBIDRAFT_03g038910

[Sorghum bicolor]

NP_001148462
226497951
LOC100282077 [Zea mays]
0.936306

Zea mays

3286
4640

&gt:gi|195619496|gb|ACG31578.1|

CTD small phosphatase-like protein

[Zea mays]

NP_001136647
219363036
hypothetical protein LOC100216776
0.933121

Zea mays

3287
4641

[Zea mays]

&gt:gi|194696496|gb|ACF82332.1|

unknown [Zea mays]

ACG32959
195622257
CTD small phosphatase-like protein
0.933121

Zea mays

3288
4642

[Zea mays]

EEC71746
54362548
hypothetical protein OsI_04315
0.898089

Oryza sativa Indica Group
3289

[Oryza sativa Indica Group]

NP_001044710
115440860
Os01g0833100 [Oryza sativa Japonica Group]
0.894904

Oryza sativa Japonica Group
3290
4643

&gt:gi|56202314|dbj|BAD73773.1|

NLI interacting factor (NIF) family protein-like

[Oryza sativa Japonica Group]

&gt:gi|113534241|dbj|BAF06624.1|

Os01g0833100 [Oryza sativa Japonica Group]

&gt:gi|215697182|dbj|BAG91176.1|

unnamed protein product

[Oryza sativa Japonica Group]

&gt:gi|222619498|gb|EEE55630.1|

hypothetical protein OsJ_03971

[Oryza sativa Japonica Group]

BAJ91589
326509344
predicted protein
0.89172

Hordeum vulgare subsp. vulgare
3291
4644

[Hordeum vulgare subsp. vulgare]

XP_002439933
242088200
hypothetical protein SORBIDRAFT_09g022940
0.719745

Sorghum bicolor

3292
4645

[Sorghum bicolor]

&gt:gi|241945218|gb|EES18363.1|

hypothetical protein SORBIDRAFT_09g022940

[Sorghum bicolor]

EAY98360
54362548
hypothetical protein OsI_20271
0.748408

Oryza sativa Indica Group
3293

[Oryza sativa Indica Group]

BAK00193
326519639
predicted protein
0.726115

Hordeum vulgare subsp. vulgare
3294
4646

[Hordeum vulgare subsp. vulgare]

&gt:gi|326529107|dbj|BAK00947.1|

predicted protein

[Hordeum vulgare subsp. vulgare]

132-153
XP_002463784
242032778
hypothetical protein SORBIDRAFT_01g006100
1

Sorghum bicolor

3295
4647

[Sorghum bicolor]

&gt:gi|241917638|gb|EER90782.1|

hypothetical protein SORBIDRAFT_01g006100

[Sorghum bicolor]

ACG39703
195640469
ferredoxin--NADP reductase, root isozyme
0.936842

Zea mays

3296
4648

[Zea mays]

NP_001051476
115455750
Os03g0784700 [Oryza sativa Japonica Group]
0.894737

Oryza sativa Japonica Group
3297
4649

&gt:gi|729480|sp|P41345.1|FENR2_ORYSJ

RecName: Full = Ferredoxin--NADP reductase, root isozyme,

chloroplastic; Short = FNR; Flags: Precursor

&gt:gi|14718314|gb|AAK72892.1|AC091123_11

ferredoxin-NADP+ reductase

[Oryza sativa Japonica Group]

&gt:gi|435647|dbj|BAA04232.1|

ferredoxin-NADP+ reductase

[Oryza sativa Japonica Group]

&gt:gi|902936|dbj|BAA07479.1|

root ferredoxin-NADP+ reductase

[Oryza sativa Japonica Group]

&gt:gi|108711425|gb|ABF99220.1

Ferredoxin-NADP reductase, root isozyme,

chloroplast precursor, putative, expressed

[Oryza sativa Japonica Group]

&gt:gi|113549947|dbj|BAF13390.1|

Os03g0784700 [Oryza sativa Japonica Group]

&gt:gi|125545944|gb|EAY92083.1|

hypothetical protein OsI_13788

[Oryza sativa Indica Group]

&gt:gi|125588154|gb|EAZ28818.1|

hypothetical protein OsJ_12850

[Oryza sativa Japonica Group]

&gt:gi|215678914|dbj|BAG96344.1|

unnamed protein product

[Oryza sativa Japonica Group]

&gt:gi|1096932lprf||2113196A ferredoxin-NADP

oxidoreductase

BAJ93902
326488466
predicted protein
0.878947

Hordeum vulgare subsp. vulgare
3298
4650

[Hordeum vulgare subsp. vulgare]

NP_001058890
115470582
Os07g0147900 [Oryza sativa Japonica Group]
0.823684

Oryza sativa Japonica Group
3299
4651

&gt:gi|3913653|sp|O23877.1|FENR3_ORYSJ

RecName: Full = Ferredoxin--NADP reductase, embryo

isozyme, chloroplastic; Short = FNR; Flags: Precursor

&gt:gi|1778686|dbj|BAA13417.1| precursor

ferredoxin-NADP+ oxidoreductase [Oryza sativa

(Japonica cultivar-group)]

&gt:gi|34393644|dbj|BAC83340.1| Ferredoxin-NADP

reductase, embryo isozyme, chloroplasl precursor

(FNR) [Oryza sativa Japonica Group]

&gt:gi|11361 0426|dbj|BAF20804.1| Os07g0147900

[Oryza sativa Japonica Group]

&gt:gi|125599119|gb|EAZ38695.1| hypothetical

protein OsJ_23093 [Oryza sativa Japonica Group]

NP_001132762
212722161
hypothetical protein LOC100194249 [Zea mays]
0.823684

Zea mays

3300
4652

&gt:gi|194695328|gb|ACF81748.1|

unknown [Zea mays]

ACG35047
195626433
ferredoxin-NADP reductase, embryo isozyme [Zea mays]
0.821053

Zea mays

3301
4653

EAZ02773
54362548
hypothetical protein OsI_24896
0.821053

Oryza sativa Indica Group
3302

[Oryza sativa Indica Group]

XP_002461452
242047411
hypothetical protein SORBIDRAFT_02g002900
0.815789

Sorghum bicolor

3303
4654

[Sorghum bicolor]

&gt:gi|241924829|gb|EER97973.1|

hypothetical protein SORBIDRAFT_02g002900

[Sorghum bicolor]

172-193
ACF87736
194707303
unknown [Zea mays]
1

Zea mays

3304
4655

&gt:gi|223949881|gb|ACN29024.1|

unknown [Zea mays]

&gt:gi|238009776|gb|ACR35923.1|

unknown [Zea mays]

&gt:gi|238011352|gb|ACR36711.1|

unknown [Zea mays]

AAB40034
500750
ferredoxin-NADP reductase precursor
0.847769

Zea mays

3305
4656

[Zea mays]

1JB9_A

Chain A, Crystal Structure Of The Ferredoxin: nadp+
0.829396

Zea mays

3306

Reductase From Maize Root At 1.7 Angstroms

302-323
XP_002465048
242035306
hypothetical protein SORBIDRAFT_01g031270
1

Sorghum bicolor

3307
4657

[Sorghum bicolor]

&gt:gi|241918902|gb|EER92046.1|

hypothetical protein SORBIDRAFT_01g031270

[Sorghum bicolor]

NP_001151845
226530638
actin-depolymerizing factor [Zea mays]
0.954248

Zea mays

3308
4658

&gt:gi|195650207|gb|ACG44571.1|

actin-depolymerizing factor [Zea mays]

AAG13444
10122030
putative actin depolymerizing factor
0.954248

Oryza sativa Japonica Group
3309
4659

[Oryza sativa Japonica Group]

&gt:gi|22122913|gb|AAM92296.1|

putative actin depolymerizing factor

[Oryza sativa Japonica Group]

&gt:gi|125532673|gb|EAY79238.1|

hypothetical protein OsI_34355

[Oryza sativa Indica Group]

NP_001065088
115482989
Os10g0521100 [Oryza sativa Japonica Group]
0.895425

Oryza sativa Japonica Group
3310
4660

&gt:gi|122212110|sp|Q337A5.1|ADF10_ORYSJ

RecName: Full = Actin-depolymerizing factor 10;

Short = ADF-10; Short = OsADF10

&gt:gi|78708922|gb|ABB47897.1|

Actin-depolymerizing factor, putative, expressed

[Oryza sativa Japonica Group]

&gt:gi|113639697|dbj|BAF27002.1|

Os10g0521100 [Oryza sativa Japonica Group]

&gt:gi|215693794|dbj|BAG88993.1|

unnamed protein product

[Oryza sativa Japonica Group]

&gt:gi|215768406|dbj|BAH00635.1|

unnamed protein product

[Oryza sativa Japonica Group]

&gt:gi|222613 147|gb|EEE51279.1|

hypothetical protein OsJ_32187

[Oryza sativa Japonica Group]

Q0D744

RecName: Full = Putative actin-depolymerizing factor 8;
0.843137

Oryza sativa Japonica Group
3311

Short = ADF-8; Short = OsADF8

&gt:gi|34394310|dbj|BAC84792.1|

putative actin depolymerizing factor

[Oryza sativa Japonica Group]

EEE58130
54398660
hypothetical protein OsJ_09029
0.816993

Oryza sativa Japonica Group
3312

[Oryza sativa Japonica Group]

Predicted
893-913
XP_002465226
242035662
hypothetical protein SORBIDRAFT_01g034550
1

Sorghum bicolor

3313
4661

zma

[Sorghum bicolor]

mir

&gt:gi|241919080|gb|EER92224.1|

49248

hypothetical protein SORBIDRAFT_01g034550

[Sorghum bicolor]

ABF96114
108705663
proline-rich family protein, putative,
0.8583

Oryza sativa Japonica Group
3314
4662

expressed [Oryza sativa Japonica Group]

&gt:gi|108708320|gb|ABF96115.1|

proline-rich family protein, putative, expressed

[Oryza sativa Japonica Group]

&gt:gi|218192888|gb|EEC75315.1|

hypothetical protein OsI_11686

[Oryza sativa Indica Group]

&gt:gi|222624967|gb|EEE59099.1|

hypothetical protein OsJ_10953

[Oryza sativa Japonica Group]

NP_001060438
115473678
Os07g0642800 [Oryza sativa Japonica Group]
0.722672

Oryza sativa Japonica Group
3315
4663

&gt:gi|33146645|dbj|BAC79975.1| unknown protein

[Oryza sativa Japonica Group]

&gt:gi|50509935|dbj|BAD30256.1| unknown protein

[Oryza sativa Japonica Group]

&gt:gi|113611 974|dbj|BAF22352.1| Os07g0642800

[Oryza sativa Japonica Group]

&gt:gi|125601263|gb|EAZ40839.1| hypothetical

protein OsJ_25318 [Oryza sativa Japonica Group]

&gt:gi|215707132|dbj|BAG93592.1| unnamed protein

product [Oryza sativa Japonica Group]

NP_001136832
219362356
hypothetical protein LOC100216981
0.714575

Zea mays

3316
4664

[Zea mays]

&gt:gi|194697292|gb|ACF82730.1|

unknown [Zea mays]

&gt:gi|223944185|gb|ACN26176.1|

unknown [Zea mays]

EAZ04885
54362548
hypothetical protein OsI_27067
0.720648

Oryza sativa Indica Group
3317

[Oryza sativa Indica Group]

XP_002461113
242046733
hypothetical protein SORBIDRAFT_02g040980
0.720648

Sorghum bicolor

3318
4665

[Sorghum bicolor]

&gt:gi|241924490|gb|EER97634.1|

hypothetical protein SORBIDRAFT_02g040980

[Sorghum bicolor]

BAK07098
326515703
predicted protein
0.718623

Hordeum vulgare subsp. vulgare
3319
4666

[Hordeum vulgare subsp. vulgare]

320-340
YP_003208225
260677373
ribosomal protein S3 [Coix lacryma-jobi]
1

Coix lacryma-jobi
3320
4667

&gt:gi|209361395|gb|ACI43310.1| ribosomal protein

S3 [Coix lacryma-jobi]

YP_004733282
339906432
ribosomal protein S3 [Indocalamus longiauritus]
0.959821

Indocalamus longiauritus

3321
4668

&gt:gi|340034064|ref|YP_004733616.1| ribosomal

protein S3 [Phyllostachys edulis]

&gt:gi|340034235|ref|YP_004733798.1| ribosomal

protein S3 [Acidosasa purpurea]

&gt:gi|340034403|ref|YP_004734016.1| ribosomal protein

S3 [Phyllostachys nigra var. henonis]

&gt:gi|340034574|ref|YP_004734223.1| ribosomal

protein S3 [Ferrocalamus rimosivaginus]

&gt:gi|307133924|gb|ADN32929.1| ribosomal protein

S3 [Phyllostachys nigra var. henonis]

&gt:gi|309321655|gb|ADO65180.1| ribosomal protein

S3 [Acidosasa purpurea]

&gt:gi|309321739|gb|ADO65263.1| ribosomal protein

S3 [Ferrocalamus rimosivaginus]

&gt:gi|309321823|gb|ADO65346.1| ribosomal protein

S3 [Indocalamus longiauritus]

&gt:gi|309321906|gb|ADO65428.1| ribosomal protein

S3 [Phyllostachys edulis]

AEI70820
337730951
ribosomal protein S3 [Puelia olyriformis]
0.955357

Puelia olyriformis

3322
4669

YP_004734139
340034430
ribosomal protein S3 [Bambusa emeiensis]
0.946429

Bambusa emeiensis

3323
4670

&gt:gi|309321991|gb|ADO65512.1|

ribosomal protein S3

[Bambusa emeiensis]

Predicted
482-503
NP_001140256
226500157
hypothetical protein LOC100272298 [Zea mays]
1

Zea mays

3324
4671

zma

&gt:gi|223947639|gb|ACN27903.1|

mir

unknown [Zea mays]

49259

374-395
BAJ84854
326490380
predicted protein
1

Hordeum vulgare subsp. vulgare
3325
4672

[Hordeum vulgare subsp. vulgare]

XP_002446506
242073139
hypothetical protein SORBIDRAFT_06g017 100
0.901328

Sorghum bicolor

3326
4673

[Sorghum bicolor]

&gt:gi|241937689|gb|EES10834.1|

hypothetical protein SORBIDRAFT_06g017100

[Sorghum bicolor]

NP_001148156
226498467
amino acid permease [Zea mays]
0.893738

Zea mays

3327
4674

&gt:gi|195616234|gb|ACG29947.1|

amino acid permease [Zea mays]

NP_001052846
115458491
Os04g0435100 [Oryza sativa Japonica Group]
0.86907

Oryza sativa Japonica Group
3328
4675

&gt:gi|21741208|emb|CAD41019.1|

OSJNBb0086G13.12 [Oryza sativa Japonica Group]

&gt:gi|113564417|dbj|BAF14760.1|

Os04g0435100 [Oryza sativa Japonica Group]

&gt:gi|116310284|emb|CAH67303.1|

OSIGBa0102D10.6 [Oryza sativa Indica Group]

&gt:gi|125548375|gb|EAY94197.1|

hypothetical protein OsI_15971 [Oryza sativa Indica Group]

&gt:gi|125590463|gb|EAZ30813.1|

hypothetical protein OsJ_14882

[Oryza sativa Japonica Group]

&gt:gi|215687171|dbj|BAG90941.1|

unnamed protein product

[Oryza sativa Japonica Group]

XP_002309938
224093574
amino acid transporter
0.827324

Populus trichocarpa

3329
4676

[Populus trichocarpa]

&gt:gi|222852841|gb|EEE90388.1|

amino acid transporter

[Populus trichocarpa]

CBI21593
270232045
unnamed protein product [Vitis vinifera]
0.823529

Vitis vinifera

3330
4677

XP_002274762
225438399
PREDICTED: hypothetical protein
0.821632

Vitis vinifera

3331
4678

[Vitis vinifera]

CAN60789
147773951
hypothetical protein VITISV_000645
0.819734

Vitis vinifera

3332
4679

[Vitis vinifera]

XP_002520314
255558577
GABA-specific permease, putative
0.741935

Ricinus communis

3333
4680

[Ricinus communis]

&gt:gi|223540533|gb|EEF42100.1|

GABA-specific permease, putative

[Ricinus communis]

XP_002284603
225459654
PREDICTED: hypothetical protein
0.753321

Vitis vinifera

3334
4681

[Vitis vinifera]

28-49
XP_002456818
242055344
hypothetical protein SORBIDRAFT_03g043360
1

Sorghum bicolor

3335
4682

[Sorghum bicolor]

&gt:gi|241928793|gb|EES01938.1|

hypothetical protein SORBIDRAFT_03g043360

[Sorghum bicolor]

NP_001144608
226505097
hypothetical protein LOC100277624 [Zea mays]
0.899244

Zea mays

3336
4683

&gt:gi|195644550|gb|ACG41743.1|

hypothetical protein [Zea mays]

&gt:gi|224033445|gb|ACN35798.1|

unknown [Zea mays]

NP_001062225
115477257
Os08g0513300 [Oryza sativa Japonica Group]
0.743073

Oryza sativa Japonica Group
3337
4684

&gt:gi|42408809|dbj|BAD10070.1|

unknown protein [Oryza sativa Japonica Group]

&gt:gi|113624194|dbj|BAF24139.1|

Os08g0513300 [Oryza sativa Japonica Group]

&gt:gi|125562163|gb|EAZ07611.1| hypothetical

protein OsI_29862 [Oryza sativa Indica Group]

&gt:gi|125603995|gb|EAZ43320.1| hypothetical

protein OsJ_27916

[Oryza sativa Japonica Group]

&gt:gi|215697131|dbj|BAG91125.1|

unnamed protein product

[Oryza sativa Japonica Group]

BAJ93470
326528576
predicted protein
0.70529

Hordeum vulgare subsp. vulgare
3338
4685

[Hordeum vulgare subsp. vulgare]

950-971
XP_002461022
242046301
hypothetical protein SORBIDRAFT_02g039350
1

Sorghum bicolor

3339
4686

[Sorghum bicolor]

&gt:gi|241924399|gb|EER97543.1|

hypothetical protein SORBIDRAFT_02g039350

[Sorghum bicolor]

266-287
NP_001147593
226502838
receptor-like protein kinase [Zea mays]
1

Zea mays

3340
4687

&gt:gi|195612392|gb|ACG28026.1|

receptor-like protein kinase [Zea mays]

NP_001064013
115480839
Os10g0101000 [Oryza sativa Japonica Group]
0.736196

Oryza sativa Japonica Group
3341
4688

&gt:gi|18481964|gb|AAL73562.1|AC079632_6

Putative receptor-like protein kinase

[Oryza sativa Japonica Group]

&gt:gi|19920204|gb|AAM08636.1|AC108883_9

Putative receptor-like protein kinase

[Oryza sativa Japonica Group]

&gt:gi|31429736|gb|AAP51745.1|

Protein kinase domain containing protein, expressed

[Oryza sativa Japonica Group]

&gt:gi|113638622|dbj|BAF25927.1|

Os10g0101000 [Oryza sativa Japonica Group]

&gt:gi|125573756|gb|EAZ15040.1|

hypothetical protein OsJ_30450

[Oryza sativa Japonica Group]

BAJ93355
326528346
predicted protein
0.71411

Hordeum vulgare subsp. vulgare
3342
4689

[Hordeum vulgare subsp. vulgare]

BAJ85838
326495483
predicted protein
0.712883

Hordeum vulgare subsp. vulgare
3343
4690

[Hordeum vulgare subsp. vulgare]

Predicted
732-753
NP_001132844
239046576
hypothetical protein LOC100194336 [Zea mays]
1

Zea mays

3344
4691

zma

&gt:gi|194695554|gb|ACF81861.1|

mir

unknown [Zea mays]

49642

&gt:gi|219885465|gb|ACL53107.1|

unknown [Zea mays]

NP_001140555
226493194
hypothetical protein LOC100272620 [Zea mays]
0.85348

Zea mays

3345
4692

&gt:gi|194690356|gb|ACF79262.1|

unknown [Zea mays]

&gt:gi|194699966|gb|ACF84067.1| unknown

[Zea mays]

&gt:gi|219887213|gb|ACL53981.1|

unknown [Zea mays]

XP_002460380
242045017
hypothetical protein SORBIDRAFT_02g027300
0.827839

Sorghum bicolor

3346
4693

[Sorghum bicolor]

&gt:gi|241923757|gb|EER96901.1|

hypothetical protein SORBIDRAFT_02g027300

[Sorghum bicolor]

EEE69885
54398660
hypothetical protein OsJ_29706
0.750916

Oryza sativa Japonica Group
3347

[Oryza sativa Japonica Group]

NP_001063436
115479684
Os09g0470500 [Oryza sativa Japonica Group]
0.754579

Oryza sativa Japonica Group
3348
4694

&gt:gi|75125073|sp|Q6K498.1|HOX4_ORYSJ

RecName: Full = Homeobox-leucine zipper protein HOX4;

AltName: Full = HD-ZIP protein HOX4;

AltName: Full = Homeodomain transcription factor HOX4;

AltName: Full = OsHox4

&gt:gi|75315199|sp|Q9XH37.1|HOX4_ORYSI

RecName: Full = Homeobox-leucine zipper protein HOX4;

AltName: Full = HD-ZIP protein HOX4;

AltName: Full = Homeodomain transcription factor HOX4;

AltName: Full = OsHox4

&gt:gi|5006853|gb|AAD37697.1|AF145728_1

homeodomain leucine zipper protein

[Oryza sativa Indica Group]

&gt:gi|47848413|dbj|BAD22271.1|

homeodomain leucine zipper protein

[Oryza sativa Japonica Group]

&gt:gi|113631669|dbj|BAF25350.1|

Os09g0470500 [Oryza sativa Japonica Group]

&gt:gi|21 8202304|gb|EEC84731.1|

hypothetical protein OsI_31718

[Oryza sativa Indica Group]

BAJ85282
326493641
predicted protein
0.74359

Hordeum vulgare subsp. vulgare
3349
4695

[Hordeum vulgare subsp. vulgare]

&gt:gi|326502458|dbj|BAJ95292.1|

predicted protein

[Hordeum vulgare subsp. vulgare]

&gt:gi|326509779|dbj|BAJ87105.1|

predicted protein

[Hordeum vulgare subsp. vulgare]

521-542
XP_002489042
253761062
hypothetical protein SORBIDRAFT_0283s002010
1

Sorghum bicolor

3350
4696

[Sorghum bicolor]

&gt:gi|241947303|gb|EES20448.1|

hypothetical protein SORBIDRAFT_0283s002010

[Sorghum bicolor]

ACG35382
195627103
leucine-rich repeat receptor protein
0.878116

Zea mays

3351
4697

kinase EXS precursor [Zea mays]

ACG30302
195616943
leucine-rich repeat receptor protein
0.858726

Zea mays

3352
4698

kinase EXS precursor [Zea mays]

NP_001053443
115459685
Os04g0540900 [Oryza sativa Japonica Group]
0.778393

Oryza sativa Japonica Group
3353
4699

&gt:gi|38344983|emb|CAE02789.2|

OSJNBa0011L07.13 [Oryza sativa Japonica Group]

&gt:gi|113565014|dbj|BAF15357.1|

Os04g0540900 [Oryza sativa Japonica Group]

&gt:gi|116310384|emb|CAH67395.1|

H0115B09.7 [Oryza sativa Indica Group]

&gt:gi|125549190|gb|EAY95012.1|

hypothetical protein OsI_16820

[Oryza sativa Indica Group]

&gt:gi|125591143|gb|EAZ31493.1|

hypothetical protein OsJ_15629

[Oryza sativa Japonica Group]

&gt:gi|215694759|dbj|BAG89950.1|

unnamed protein product

[Oryza sativa Japonica Group]

BAJ85198
326493473
predicted protein
0.731302

Hordeum vulgare subsp. vulgare
3354
4700

[Hordeum vulgare subsp. vulgare]

&gt:gi|326516176|dbj|BAJ88111.1|

predicted protein

[Hordeum vulgare subsp. vulgare]

129-150
XP_002448827
242077781
hypothetical protein SORBIDRAFT_06g033930
1

Sorghum bicolor

3355
4701

[Sorghum bicolor]

&gt:gi|241940010|gb|EES13155.1|

hypothetical protein SORBIDRAFT_06g033930

[Sorghum bicolor]

NP_001169688
293332518
hypothetical protein LOC100383569
0.972477

Zea mays

3356
4702

[Zea mays]

&gt:gi|224030901|gb|ACN34526.1|

unknown [Zea mays]

NP_001061552
115475911
Os08g0326600 [Oryza sativa Japonica Group]
0.902752

Oryza sativa Japonica Group
3357
4703

&gt:gi|24414065|dbj|BAC22314.1|

putative GMP synthetase

[Oryza sativa Japonica Group]

&gt:gi|113623521|dbj|BAF23466.1|

Os08g0326600 [Oryza sativa Japonica Group]

&gt:gi|215694477|dbj|BAG89422.1|

unnamed protein product

[Oryza sativa Japonica Group]

BAK00536
326524304
predicted protein
0.880734

Hordeum vulgare subsp. vulgare
3358
4704

[Hordeum vulgare subsp. vulgare]

XP_002274590
225426433
PREDICTED: hypothetical protein [Vitis vinifera]
0.746789

Vitis vinifera

3359
4705

XP_002304500
224074940
predicted protein [Populus trichocarpa]
0.73945

Populus trichocarpa

3360
4706

&gt:gi|222841932|gb|EEE79479.1|

predicted protein [Populus trichocarpa]

XP_002886394
297837024
hypothetical protein ARALYDRAFT_893078
0.733945

Arabidopsis lyrata subsp. lyrata
3361
4707

[Arabidopsis lyrata subsp. lyrata]

&gt:gi|297332235|gb|EFH62653.1|

hypothetical protein ARALYDRAFT_893078

[Arabidopsis lyrata subsp. lyrata]

NP_176553
42562914
GMP-synthase-C and glutamine amidotransferase
0.733945

Arabidopsis thaliana

3362
4708

domain-containing protein

[Arabidopsis thaliana]

&gt:gi|12324937|gb|AAG52416.1|AC011622_4

GMP synthase; 61700-64653

[Arabidopsis thaliana]

&gt:gi|56381989|gb|AAV85713.1|

At1g63660 [Arabidopsis thaliana]

&gt:gi|332196006|gb|AEE34127.1|

GMP-synthase-C and glutamine amidotransferase

domain-containing protein

[Arabidopsis thaliana]

AAO42053
28393248
putative GMP synthase
0.73211

Arabidopsis thaliana

3363
4709

[Arabidopsis thaliana]

194-215
XP_002467027
242039264
hypothetical protein SORBIDRAFT_01g018490
1

Sorghum bicolor

3364
4710

[Sorghum bicolor]

&gt:gi|241920881|gb|EER94025.1|

hypothetical protein SORBIDRAFT_01g018490

[Sorghum bicolor]

NP_001149395
226532849
LOC100283021 [Zea mays]
0.857778

Zea mays

3365
4711

&gt:gi|195626940|gb|ACG35300.1|

secretory protein [Zea mays]

ABV22582
157093711
PR17c precursor
0.808889

Hordeum vulgare subsp. vulgare
3366
4712

[Hordeum vulgare subsp. vulgare]

&gt:gi|157093714|gb|ABV22583.1|

PR17c precursor

[Hordeum vulgare subsp. vulgare]

&gt:gi|157093720|gb|ABV22586.1|

PR17c precursor

[Hordeum vulgare subsp. vulgare]

CAA74594
2266665
hypothetical protein [Hordeum vulgare]
0.808889

Hordeum vulgare

3367
4713

&gt:gi|326494904|dbj|BAJ85547.1|

predicted protein

[Hordeum vulgare subsp. vulgare]

&gt:gi|326514206|dbj|BAJ92253.1|

predicted protein

[Hordeum vulgare subsp. vulgare]

XP_002467026
242039262
hypothetical protein SORBIDRAFT_01g018480
0.733333

Sorghum bicolor

3368
4714

[Sorghum bicolor]

&gt:gi|241920880|gb|EER94024.1|

hypothetical protein SORBIDRAFT_01g018480

[Sorghum bicolor]

AAD46133
5669007
secretory protein [Triticum aestivum]
0.791111

Triticum aestivum

3369
4715

EEC67221
54362548
hypothetical protein OsI_34133
0.702222

Oryza sativa Indica Group
3370

[Oryza sativa Indica Group]

1270-1291
ACN25803
223943438
unknown [Zea mays]
1

Zea mays

3371
4716

NP_001144623
226502924
hypothetical protein LOC100277639 [Zea mays]
0.975741

Zea mays

3372
4717

&gt:gi|195644748|gb|ACG41842.1|

hypothetical protein [Zea mays]

XP_002456637
242054982
hypothetical protein SORBIDRAFT_03g039920
0.830189

Sorghum bicolor

3373
4718

[Sorghum bicolor]

&gt:gi|241928612|gb|EES01757.1|

hypothetical protein SORBIDRAFT_03g039920

[Sorghum bicolor]

ACL53226
219885702
unknown [Zea mays]
0.762803

Zea mays

3374
4719

1323-1344
XP_002450912
242071270
hypothetical protein SORBIDRAFT_05g021030
1

Sorghum bicolor

3375
4720

[Sorghum bicolor]

&gt:gi|241936755|gb|EES09900.1|

hypothetical protein SORBIDRAFT_05g021030

[Sorghum bicolor]

NP_001146157
226497549
hypothetical protein LOC100279726 [Zea mays]
0.936995

Zea mays

3376
4721

&gt:gi|224030419|gb|ACN34285.1|

unknown [Zea mays]

NP_001068068
297611975
Os11g0547000 [Oryza sativa Japonica Group]
0.851373

Oryza sativa Japonica Group
3377
4722

&gt:gi|110832734|sp|Q2R2W1.2|ADO3_ORYSJ

RecName: Full = Adagio-like protein 3

&gt:gi|108864481|gb|ABA94231.2| Adagio 3,

putative, expressed [Oryza sativa Japonica Group]

&gt:gi|255680164|dbj|BAF28431.2|

Os11g0547000

[Oryza sativa Japonica Group]

EAZ18680
54398660
hypothetical protein OsJ_34201
0.849758

Oryza sativa Japonica Group
3378

[Oryza sativa Japonica Group]

BAJ95049
326500765
predicted protein
0.849758

Hordeum vulgare subsp. vulgare
3379
4723

[Hordeum vulgare subsp. vulgare]

ABL11478
118767204
FKF1 protein [Triticum aestivum]
0.812601

Triticum aestivum

3380
4724

ACL53371
219885992
unknown [Zea mays]
0.781906

Zea mays

3381
4725

&gt:gi|223942805|gb|ACN25486.1|

unknown [Zea mays]

EAY81253
54362548
hypothetical protein OsI_36431
0.767367

Oryza sativa Indica Group
3382

[Oryza sativa Indica Group]

ABG22521
108863896
Adagio 3, putative, expressed
0.767367

Oryza sativa Japonica Group
3383
4726

[Oryza sativa Japonica Group]

ABD28287
87138100
circadian clock-associated FKF1
0.710824

Glycine max

3384
4727

[Glycine max]

196-217
ACO72994
226701035
DRE-binding protein 3 [Zea mays]
1

Zea mays

3385
4728

NP_001147172
226504965
sbCBF6 [Zea mays]
0.911765

Zea mays

3386
4729

&gt:gi|195607972|gb|ACG25816.1|

sbCBF6 [Zea mays]

XP_002462691
242049893
hypothetical protein SORBIDRAFT_02g030320
0.831933

Sorghum bicolor

3387
4730

[Sorghum bicolor]

&gt:gi|241926068|gb|EER99212.1|

hypothetical protein SORBIDRAFT_02g030320

[Sorghum bicolor]

NP_001063712
115480236
Os09g0522200 [Oryza sativa Japonica Group]
0.739496

Oryza sativa Japonica Group
3388
4731

&gt:gi|75253216|sp|Q64MA1.1|DRE1A_ORYSJ

RecName: Full = Dehydration-responsive element-

binding protein 1A; Short = Protein DREB1A;

AltName: Full = Protein C-repeat-binding factor 3;

Short = rCBF3

&gt:gi|22594969|gb|AAN02486.1|AF300970_1

DRE-binding protein 1A

[Oryza sativa]

&gt:gi|52075594|dbj|BAD46704.1|

DRE-binding protein 1A

[Oryza sativa Japonica Group]

&gt:gi|113631945|dbj|BAF25626.1|

Os09g0522200 [Oryza sativa Japonica Group]

A2Z389

RecName: Full = Dehydration-responsive element-
0.735294

Oryza sativa

3389

binding protein 1A; Short = Protein DREB1A;

AltName: Full = Protein C-repeat-binding factor 3;

Short = rCBF3

&gt:gi|33321848|gb|AAQ06658.1|

apetala2 domain-containing CBF1-like protein

[Oryza sativa]

&gt:gi|125564420|gb|EAZ09800.1|

hypothetical protein OsI_32087

[Oryza sativa Indica Group]

AAQ23983
33637697
transcription factor RCBF3
0.735294

Oryza sativa

3390
4732

[Oryza sativa]

ABG73450
110430645
DREBlb [Oryza brachyantha]
0.705882

Oryza brachyantha

3391

XP_002462692
242049895
hypothetical protein SORBIDRAFT_02g030330
0.714286

Sorghum bicolor

3392
4733

[Sorghum bicolor]

&gt:gi|60593391|gb|AAX28960.1|

SbCBF6 [Sorghum bicolor]

&gt:gi|241926069|gb|EER99213.1|

hypothetical protein SORBIDRAFT_02g030330

[Sorghum bicolor]

1246-1267
XP_002463252
242051015
hypothetical protein SORBIDRAFT_02g040610
1

Sorghum bicolor

3393
4734

[Sorghum bicolor]

&gt:gi|241926629|gb|EER99773.1|

hypothetical protein SORBIDRAFT_02g040610

[Sorghum bicolor]

ACF78838
194689507
unknown [Zea mays]
0.958678

Zea mays

3394
4735

&gt:gi|238009848|gb|ACR35959.1|

unknown [Zea mays]

NP_001105608
162458296
pyruvate dehydrogenase (lipoamide) kinase2
0.955923

Zea mays

3395
4736

[Zea mays]

&gt:gi|3695005|gb|AAC63962.1|

pyruvate dehydrogenase kinase isoform 2

[Zea mays]

NP_001060401
115473604
Os07g0637300 [Oryza sativa Japonica Group]
0.898072

Oryza sativa Japonica Group
3396
4737

&gt:gi|12829952|gb|AAK01947.1|

pyruvate dehydrogenase kinase 1

[Oryza sativa Indica Group]

&gt:gi|23237829|dbj|BAC16404.1|

pyruvate dehydrogenase kinase 1

[Oryza sativa Japonica Group]

&gt:gi|60499792|gb|AAX22104.1|

pyruvate dehydrogenase kinase

[Oryza sativa Indica Group]

&gt:gi|60499794|gb|AAX22105.1|

pyruvate dehydrogenase kinase

[Oryza sativa Indica Group]

&gt:gi|113611937|dbj|BAF22315.1|

Os07g0637300 [Oryza sativa Japonica Group]

EEC82518
54362548
hypothetical protein OsI_27023
0.898072

Oryza sativa Indica Group
3397

[Oryza sativa Indica Group]

EEE67664
54398660
hypothetical protein OsJ_25286
0.895317

Oryza sativa Japonica Group
3398

[Oryza sativa Japonica Group]

BAJ85210
326493497
predicted protein
0.878788

Hordeum vulgare subsp. vulgare
3399
4738

[Hordeum vulgare subsp. vulgare]

XP_002467803
242040816
hypothetical protein SORBIDRAFT_01g034390
0.812672

Sorghum bicolor

3400
4739

[Sorghum bicolor]

&gt:gi|241921657|gb|EER94801.1|

hypothetical protein SORBIDRAFT_01g034390

[Sorghum bicolor]

NP_001104897
162459440
pyruvate dehydrogenase (lipoamide) kinase1
0.807163

Zea mays

3401
4740

[Zea mays]

&gt:gi|3746431|gb|AAC63961.1|

pyruvate dehydrogenase kinase isoform 1

[Zea mays]

&gt:gi|219885093|gb|ACL52921.1|

unknown [Zea mays]

NP_001132485
212721389
hypothetical protein LOC100193944
0.801653

Zea mays

3402
4741

[Zea mays]

&gt:gi|194694512|gb|ACF81340.1|

unknown [Zea mays]

Predicted
829-850
XP_002441194
242090722
hypothetical protein SORBIDRAFT_09g022010
1

Sorghum bicolor

3403
4742

zma

[Sorghum bicolor]

mir

&gt:gi|241946479|gb|EES19624.1|

49718

hypothetical protein SORBIDRAFT_09g022010

[Sorghum bicolor]

NP_001144777
226503764
hypothetical protein LOC100277843
0.879684

Zea mays

3404
4743

[Zea mays]

&gt:gi|195646864|gb|ACG42900.1|

hypothetical protein [Zea mays]

NP_001055695
115464190
Os05g0447700 [Oryza sativa Japonica Group]
0.783037

Oryza sativa Japonica Group
3405
4744

&gt:gi|51854380|gb|AAU10760.1| unknown

protein [Oryza sativa Japonica Group]

&gt:gi|113579246|dbj|BAF17609.1|

Os05g0447700 [Oryza sativa Japonica Group]

&gt:gi|215701012|dbj|BAG92436.1|

unnamed protein product

[Oryza sativa Japonica Group]

&gt:gi|215701421|dbj|BAG92845.1|

unnamed protein product

[Oryza sativa Japonica Group]

&gt:gi|222631775|gb|EEE63907.1|

hypothetical protein OsJ_18732

[Oryza sativa Japonica Group]

EAY98243
54362548
hypothetical protein OsI_20153
0.781065

Oryza sativa Indica Group
3406

[Oryza sativa Indica Group]

BAJ91869
326511042
predicted protein
0.700197

Hordeum vulgare subsp. vulgare
3407
4745

[Hordeum vulgare subsp. vulgare]

2065-2086
BAD02277
38488589
vacuolar proton pyrophosphatase
1

Oryza sativa Japonica Group
3408

[Oryza sativa Japonica Group]

BAD25066
38488637
putative inorganic diphosphatase
0.998701

Oryza sativa Japonica Group
3409

[Oryza sativa Japonica Group]

&gt:gi|222622322|gb|EEE56454.1|

hypothetical protein OsJ_05651

[Oryza sativa Japonica Group]

XP_002453419
242064259
hypothetical protein SORBIDRAFT_04g005710
0.961039

Sorghum bicolor

3410
4746

[Sorghum bicolor]

&gt:gi|241933250|gb|EES06395.1|

hypothetical protein SORBIDRAFT_04g005710

[Sorghum bicolor]

CAG29370
57161867
vacuolar H+-translocating inorganic
0.950649

Zea mays

3411

pyrophosphatase [Zea mays]

BAJ91598
326509362
predicted protein
0.92987

Hordeum vulgare subsp. vulgare
3412
4747

[Hordeum vulgare subsp. vulgare]

NP_001058184
115469169
Os06g0644200 [Oryza sativa Japonica Group]
0.937662

Oryza sativa Japonica Group
3413
4748

&gt:gi|51535512|dbj|BAD37431.1|

inorganic diphosphatase, H+-translocating, vacuolar

membrane [Oryza sativa Japonica Group]

&gt:gi|113596224|dbj|BAF20098.1|

Os06g0644200 [Oryza sativa Japonica Group]

&gt:gi|215704675|dbj|BAG94303.1|

unnamed protein product

[Oryza sativa Japonica Group]

BAA08232
1747293
vacuolar H+-pyrophosphatase
0.936364

Oryza sativa (Japonica cultivar-group)]
3414
4749

[Oryza sativa (Japonica cultivar-group)]

BAA31523
3298473
Ovp1 [Oryza sativa]
0.935065

Oryza sativa

3415
4750

BAB18681
11527560
vacuolar proton-inorganic pyrophosphatase
0.925974

Hordeum vulgare subsp. vulgare
3416
4751

[Hordeum vulgare subsp. vulgare]

EEE66103
54398660
hypothetical protein OsJ_22136
0.935065

Oryza sativa Japonica Group
3417

[Oryza sativa Japonica Group]

Predicted
749-769
ACN36483
224034814
unknown [Zea mays]
1

Zea mays

3418
4752

zma

mir

50085

XP_002464347
242033904
hypothetical protein SORBIDRAFT_01g016710
0.753709

Sorghum bicolor

3419
4753

[Sorghum bicolor]

&gt:gi|241918201|gb|EER91345.1|

hypothetical protein SORBIDRAFT_01g016710

[Sorghum bicolor]

772-792
XP_002441965
242083079
hypothetical protein SORBIDRAFT_08g005660
1

Sorghum bicolor

3420
4754

[Sorghum bicolor]

&gt:gi|241942658|gb|EES15803.1|

hypothetical protein SORBIDRAFT_08g005660

[Sorghum bicolor]

NP_001147944
226491563
AAP6 [Zea mays]
0.887734

Zea mays

3421
4755

&gt:gi|195614738|gb|ACG29199.1|

AAP6 [Zea mays]

ACF82748
194697327
unknown [Zea mays]
0.881497

Zea mays

3422
4756

NP_001066353
115487731
Os12g0194900 [Oryza sativa Japonica Group]
0.881497

Oryza sativa Japonica Group
3423
4757

&gt:gi|108862289|gb|ABA96080.2|

amino acid permease I, putative, expressed

[Oryza sativa Japonica Group]

&gt:gi|113648860|dbj|BAF29372.1|

Os12g0194900 [Oryza sativa Japonica Group]

&gt:gi|125536049|gb|EAY82537.1|

hypothetical protein OsI_37760

[Oryza sativa Indica Group]

113-133
EEC74142
54362548
hypothetical protein OsI_09216
1

Oryza sativa Indica Group
3424

[Oryza sativa Indica Group]

NP_001152051
226502027
serine esterase family protein
0.848765

Zea mays

3425
4758

[Zea mays]

&gt:gi|195652153|gb|ACG45544.1|

serine esterase family protein

[Zea mays]

ACF80204
194692239
unknown [Zea mays]
0.712963

Zea mays

3426
4759

XP_002452943
242063307
hypothetical protein SORBIDRAFT_04g035350
0.728395

Sorghum bicolor

3427
4760

[Sorghum bicolor]

&gt:gi|241932774|gb|EES05919.1|

hypothetical protein SORBIDRAFT_04g035350

[Sorghum bicolor]

200-220
XP_002462815
242050141
hypothetical protein SORBIDRAFT_02g032420
1

Sorghum bicolor

3428
4761

[Sorghum bicolor]

&gt:gi|241926192|gb|EER99336.1|

hypothetical protein SORBIDRAFT_02g032420

[Sorghum bicolor]

EEC85037
54362548
hypothetical protein OsI_32346
0.964072

Oryza sativa Japonica Group
3429

[Oryza sativa Indica Group]

&gt:gi|222642071|gb|EEE70203.1|

hypothetical protein OsJ_30293

[Oryza sativa Japonica Group]

NP_001142116
226502757
hypothetical protein LOC100274280
0.976048

Zea mays

3430
4762

[Zea mays]

&gt:gi|194704262|gb|ACF86215.1|

unknown [Zea mays]

&gt:gi|194707182|gb|ACF87675.1|

unknown [Zea mays]

BAJ85748
326495303
predicted protein
0.952096

Hordeum vulgare subsp. vulgare
3431
4763

[Hordeum vulgare subsp. vulgare]

&gt:gi|326508052|dbj|BAJ86769.1|

predicted protein

[Hordeum vulgare subsp. vulgare]

&gt:gi|326524422|dbj|BAK00594.1|

predicted protein

[Hordeum vulgare subsp. vulgare]

ACU13649
255626608
unknown [Glycine max]
0.820359

Glycine max

3432
4764

ACU14908
255629126
unknown [Glycine max]
0.820359

Glycine max

3433
4765

XP_002284866
225451010
PREDICTED: hypothetical protein
0.790419

Vitis vinifera

3434
4766

[Vitis vinifera]

ACG47475
195656014
hypothetical protein [Zea mays]
0.874251

Zea mays

3435
4767

XP_002512352
255542577
microsomal signal peptidase 23 kD subunit, putative
0.784431

Ricinus communis

3436
4768

[Ricinus communis]

&gt:gi|223548313|gb|EEF49804.1|

microsomal signal peptidase 23 kD subunit, putative

[Ricinus communis]

946-966
XP_002452943
242063307
hypothetical protein SORBIDRAFT_04g035350
1

Sorghum bicolor

3437
4769

[Sorghum bicolor]

&gt:gi|241932774|gb|EES05919.1|

hypothetical protein SORBIDRAFT_04g035350

[Sorghum bicolor]

ACF88103
194708037
unknown [Zea mays]
0.9

Zea mays

3438
4770

NP_001048339
115449118
Os02g0787100 [Oryza sativa Japonica Group]
0.757895

Oryza sativa Japonica Group
3439
4771

&gt:gi|47497166|dbj|BAD19214.1|

hypothetical protein [Oryza sativa Japonica Group]

&gt:gi|47497751|dbj|BAD19851.1|

hypothetical protein [Oryza sativa Japonica Group]

&gt:gi|113537870|dbj|BAF10253.1|

Os02g0787100 [Oryza sativa Japonica Group]

BAJ88501
326522910
predicted protein
0.7

Hordeum vulgare subsp. vulgare
3440
4772

[Hordeum vulgare subsp. vulgare]

231-251
NP_001150320
226502818
signal peptidase complex subunit 3
1

Zea mays

3441
4773

[Zea mays]

&gt:gi|194695862|gb|ACF82015.1|

unknown [Zea mays]

&gt:gi|195638350|gb|ACG38643.1|

signal peptidase complex subunit 3

[Zea mays]

ACG47475
195656014
hypothetical protein [Zea mays]
0.862275

Zea mays

3442
4774

AAO45754
307135766
signal peptidase protein-like protein
0.778443

Cucumis melo subsp. melo
3443
4775

[Cucumis melo subsp. melo]

1001-1021
XP_002436903
242092825
hypothetical protein SORBIDRAFT_10g010840
1

Sorghum bicolor

3444
4776

[Sorghum bicolor]

&gt:gi|241915126|gb|EER88270.1|

hypothetical protein SORBIDRAFT_10g010840

[Sorghum bicolor]

NP_001130415
212274954
hypothetical protein LOC100191511
0.954128

Zea mays

3445
4777

[Zea mays]

&gt:gi|194689060|gb|ACF78614.1|

unknown [Zea mays]

&gt:gi|223942719|gb|ACN25443.1|

unknown [Zea mays]

&gt:gi|224029573|gb|ACN33862.1|

unknown [Zea mays]

NP_001057438
115467677
Os06g0297700 [Oryza sativa Japonica Group]
0.821101

Oryza sativa Japonica Group
3446
4778

&gt:gi|53791981|dbj|BAD54434.1|

unknown protein

[Oryza sativa Japonica Group]

&gt:gi|113595478|dbj|BAF19352.1|

Os06g0297700

[Oryza sativa Japonica Group]

BAK05539
326487733
predicted protein
0.80581

Hordeum vulgare subsp. vulgare
3447
4779

[Hordeum vulgare subsp. vulgare]

537-557
XP_002451778
242060977
hypothetical protein SORBIDRAFT_04g007700
1

Sorghum bicolor

3448
4780

[Sorghum bicolor]

&gt:gi|241931609|gb|EES04754.1|

hypothetical protein SORBIDRAFT_04g007700

[Sorghum bicolor]

NP_001150860
226502363
dihydrolipoamide S-acetyltransferase1
0.955473

Zea mays

3449
4781

[Zea mays]

&gt:gi|195642434|gb|ACG40685.1|

dihydrolipoyllysine-residue acetyltransferase

component of pyruvatedehydrogenase complex

[Zea mays]

NP_001104936
162458261
dihydrolipoamide S-acetyltransferase
0.946197

Zea mays

3450
4782

[Zea mays]

&gt:gi|5669871|gb|AAD46491.1|AF135014_1

dihydrolipoamide S-acetyltransferase

[Zea mays]

NP_001059445
115471692
Os07g0410100 [Oryza sativa Japonica Group]
0.834879

Oryza sativa Japonica Group
3451
4783

&gt:gi|33354212|dbj|BAC81178.1|

unknown protein

[Oryza sativa Japonica Group]

&gt:gi|50510197|dbj|BAD31326.1|

unknown protein

[Oryza sativa Japonica Group]

&gt:gi|113610981|dbj|BAF21359.1|

Os07g0410100

[Oryza sativa Japonica Group]

&gt:gi|215678515|dbj|BAG92170.1|

unnamed protein

product [Oryza sativa Japonica Group]

EAZ03591
54362548
hypothetical protein OsI_25727
0.831169

Oryza sativa Indica Group
3452

[Oryza sativa Indica Group]

NP_001045618
115443676
Os02g0105200 [Oryza sativa Japonica Group]
0.825603

Oryza sativa Japonica Group
3453
4784

&gt:gi|40363771|dbj|BAD06281.1|

putative dihydrolipoamide S-acetyltransferase

[Oryza sativa Japonica Group]

&gt:gi|41052549|dbj|BAD07541.1|

putative dihydrolipoamide S-acetyltransferase

[Oryza sativa Japonica Group]

&gt:gi|50252092|dbj|BAD28078.1|

putative dihydrolipoamide S-acetyltransferase

[Oryza sativa Japonica Group]

&gt:gi|113535149|dbj|BAF07532.1|

Os02g0105200

[Oryza sativa Japonica Group]

&gt:gi|215693370|dbj|BAG88752.1|

unnamed protein product

[Oryza sativa Japonica Group]

&gt:gi|222622010|gb|EEE56142.1|

hypothetical protein OsJ_05022

[Oryza sativa Japonica Group]

EEC72305
54362548
hypothetical protein OsI_05488
0.821892

Oryza sativa Indica Group
3454

[Oryza sativa Indica Group]

NP_001056555
115465911
Os06g0105400 [Oryza sativa Japonica Group]
0.766234

Oryza sativa Japonica Group
3455
4785

&gt:gi|55295833|dbj|BAD67701.1|

putative dihydrolipoamide S-acetyltransferase

[Oryza sativa Japonica Group]

&gt:gi|113594595|dbj|BAF18469.1|

Os06g0105400 [Oryza sativa Japonica Group]

EEC79834
54362548
hypothetical protein OsI_21298
0.756957

Oryza sativa Indica Group
3456

[Oryza sativa Indica Group]

BAJ97318
326526602
predicted protein
0.766234

Hordeum vulgare subsp. vulgare
3457
4786

[Hordeum vulgare subsp. vulgare]

Predicted
313-331
NP_001183850
308080134
hypothetical protein LOC100502443
1

Zea mays

3458
4787

zma

[Zea mays]

mir

&gt:gi|238015018|gb|ACR38544.1|

50289

unknown [Zea mays]

315-333
NP_001105340
162462750
ATP synthase subunit beta, mitochondrial precursor
1

Zea mays

3459
4788

[Zea mays]

&gt:gi|114420|sp|P19023.1|ATPBM_MAIZE

RecName: Full = ATP synthase subunit beta, mitochondrial;

Flags: Precursor

&gt:gi|22173|emb|CAA38140.1|

unnamed protein product

[Zea mays]

&gt:gi|897618|gb|AAA70268.1|

mitochondrial F-1-ATPase subunit 2

[Zea mays]

&gt:gi|223943103|gb|ACN25635.1|

unknown [Zea mays]

NP_001151807
226493588
ATP synthase beta chain [Zea mays]
0.987342

Zea mays

3460
4789

&gt:gi|195614324|gb|ACG28992.1|

ATP synthase beta chain [Zea mays]

&gt:gi|195649793|gb|ACG44364.1|

ATP synthase beta chain [Zea mays]

BAA01372
218146
mitochondrial F1-ATPase beta subunit
0.949367

Oryza sativa Japonica Group
3461
4790

[Oryza sativa Japonica Group]

BAJ95263
326502399
predicted protein
0.933092

Hordeum vulgare subsp. vulgare
3462
4791

[Hordeum vulgare subsp. vulgare]

&gt:gi|326528609|dbj|BAJ97326.1|

predicted protein

[Hordeum vulgare subsp. vulgare]

NP_001043900
115439240
Os01g0685800 [Oryza sativa Japonica Group]
0.94575

Oryza sativa Japonica Group
3463
4792

&gt:gi|113533431|dbj|BAF05814.1|

Os01g0685800 [Oryza sativa Japonica Group]

AAD03392
3676295
mitochondrial ATPase beta subunit
0.896926

Nicotiana sylvestris

3464
4793

[Nicotiana sylvestris]

AAD03394
3893823
ATPase beta subunit
0.898734

Nicotiana sylvestris

3465
4794

[Nicotiana sylvestris]

AAD03393
3893821
ATPase beta subunit
0.893309

Nicotiana sylvestris

3466
4795

[Nicotiana sylvestris]

739-757
NP_001168893
293335318
hypothetical protein LOC100382698
1

Zea mays

3467
4796

[Zea mays]

&gt:gi|223973523|gb|ACN30949.1|

unknown [Zea mays]

NP_001131845
212721699
hypothetical protein LOC100193221
0.991039

Zea mays

3468
4797

[Zea mays]

&gt:gi|194692700|gb|ACF80434.1|

unknown [Zea mays]

XP_002462395
242049301
hypothetical protein SORBIDRAFT_02g024970
0.799283

Sorghum bicolor

3469
4798

[Sorghum bicolor]

&gt:gi|241925772|gb|EER98916.1|

hypothetical protein SORBIDRAFT_02g024970

[Sorghum bicolor]

328-346
XP_002456162
242054032
hypothetical protein SORBIDRAFT_03g031470
1

Sorghum bicolor

3470
4799

[Sorghum bicolor]

&gt:gi|241928137|gb|EES01282.1|

hypothetical protein SORBIDRAFT_03g031470

[Sorghum bicolor]

P17614

RecName: Full = ATP synthase subunit beta,
0.897436

Nicotiana plumbaginifolia

3471

mitochondrial; Flags: Precursor

&gt:gi|19685|emb|CAA26620.1|

ATP synthase beta subunit

[Nicotiana plumbaginifolia]

417-435
NP_001056261
115465322
Os05g0553000 [Oryza sativa Japonica Group]
1

Oryza sativa Japonica Group
3472
4800

&gt:gi|84028177|sp|Q01859.2|ATPBM_ORYSJ

RecName: Full = ATP synthase subunit beta,

mitochondrial; Flags: Precursor

&gt:gi|49328022|gb|AAT58723.1|

putative ATP synthase beta chain

[Oryza sativa Japonica Group]

&gt:gi|50878425|gb|AAT85199.1|

putative ATP synthase beta chain

[Oryza sativa Japonica Group]

&gt:gi|113579812|dbj|BAF18175.1|

Os05g0553000 [Oryza sativa Japonica Group]

&gt:gi|215692634|dbj|BAG88054.1|

unnamed protein product

[Oryza sativa Japonica Group]

ACS83602
242129045
ATP synthase beta subunit 1
0.900362

Gossypium hirsutum

3473
4801

[Gossypium hirsutum]

Predicted
507-526
EEE57671
54398660
hypothetical protein OsJ_08115
1

Oryza sativa Japonica Group
3474

zma

[Oryza sativa Japonica Group]

mir

50480

EAY87257
54362548
hypothetical protein OsI_08658
0.984305

Oryza sativa Indica Group
3475

[Oryza sativa Indica Group]

NP_001146323
226494858
hypothetical protein LOC100279899
0.826233

Zea mays

3476
4802

[Zea mays]

&gt:gi|219886633|gb|ACL53691.1|

unknown [Zea mays]

BAJ88744
326523406
predicted protein
0.817265

Hordeum vulgare subsp. vulgare
3477
4803

[Hordeum vulgare subsp. vulgare]

543-562
AAV64247
55741096
unknown [Zea mays]
1

Zea mays

3478
4804

AAV64209
55741054
unknown [Zea mays]
0.829971

Zea mays

3479
4805

247-266
ACG33184
195622707
integral membrane protein DUF6 containing protein
1

Zea mays

3480
4806

[Zea mays]

&gt:gi|223948881|gb|ACN28524.1|

unknown [Zea mays]

XP_002462410
242049331
hypothetical protein SORBIDRAFT_02g025210
0.879357

Sorghum bicolor

3481
4807

[Sorghum bicolor]

&gt:gi|241925787|gb|EER98931.1|

hypothetical protein SORBIDRAFT_02g025210

[Sorghum bicolor]

BAH01249
116011645
unnamed protein product
0.729223

Oryza sativa Japonica Group
3482
4808

[Oryza sativa Japonica Group]

EEC84606
54362548
hypothetical protein OsI_31435
0.713137

Oryza sativa Indica Group
3483

[Oryza sativa Indica Group]

&gt:gi|222641609|gb|EEE69741.1|

hypothetical protein OsJ_29432

[Oryza sativa Japonica Group]

533-552
NP_001147862
226497613
LOC100281472 [Zea mays]
1

Zea mays

3484
4809

&gt:gi|195614188|gb|ACG28924.1|

transparent testa 12 protein

[Zea mays]

1939-1958
XP_002463844
242032898
hypothetical protein SORBIDRAFT_01g007310
1

Sorghum bicolor

3485
4810

[Sorghum bicolor]

&gt:gi|242033607|ref|XP_002464198.1|

hypothetical protein SORBIDRAFT_01g013970

[Sorghum bicolor]

&gt:gi|241917698|gb|EER90842.1|

hypothetical protein SORBIDRAFT_01g007310

[Sorghum bicolor]

&gt:gi|241918052|gb|EER91196.1|

hypothetical protein SORBIDRAFT_01g013970

[Sorghum bicolor]

NP_001151463
226529446
LOC100285096 [Zea mays]
0.941099

Zea mays

3486
4811

&gt:gi|195646966|gb|ACG42951.1|

subtilisin-like protease precursor

[Zea mays]

NP_001051353
115455504
Os03g0761500 [Oryza sativa Japonica Group]
0.875654

Oryza sativa Japonica Group
3487
4812

&gt:gi|14488360|gb|AAK63927.1|AC084282_8

putative serine protease

[Oryza sativa Japonica Group]

&gt:gi|108711215|gb|ABF99010.1|

cucumisin-like serine protease, putative, expressed

[Oryza sativa Japonica Group]

&gt:gi|113549824|dbj|BAF13267.1|

Os03g0761500 [Oryza sativa Japonica Group]

&gt:gi|125588004|gb|EAZ28668.1|

hypothetical protein OsJ_12679

[Oryza sativa Japonica Group]

&gt:gi|215678732|dbj|BAG95169.1|

unnamed protein product

[Oryza sativa Japonica Group]

&gt:gi|215737049|dbj|BAG95978.1|

unnamed protein product

[Oryza sativa Japonica Group]

BAJ99493
326508451
predicted protein
0.823298

Hordeum vulgare subsp. vulgare
3488
4813

[Hordeum vulgare subsp. vulgare]

529-548
ACN27570
223946972
unknown [Zea mays]
1

Zea mays

3489
4814

EEC76224
54362548
hypothetical protein OsI_13631
0.764368

Oryza sativa Indica Group
3490

[Oryza sativa Indica Group]

281-300
XP_002467528
242040266
hypothetical protein SORBIDRAFT_01g029660
1

Sorghum bicolor

3491
4815

[Sorghum bicolor]

&gt:gi|241921382|gb|EER94526.1|

hypothetical protein SORBIDRAFT_01g029660

[Sorghum bicolor]

NP_001147577
226531032
proline oxidase [Zea mays]
0.893788

Zea mays

3492
4816

&gt:gi|195612286|gb|ACG27973.1|

proline oxidase [Zea mays]

NP_001147660
226505515
proline oxidase [Zea mays]
0.833667

Zea mays

3493
4817

&gt:gi|195612896|gb|ACG28278.1|

proline oxidase [Zea mays]

BAK02892
326505009
predicted protein
0.787575

Hordeum vulgare subsp. vulgare
3494
4818

[Hordeum vulgare subsp. vulgare]

EAY79449
54362548
hypothetical protein OsI_34579
0.749499

Oryza sativa Indica Group
3495

[Oryza sativa Indica Group]

NP_001065321
115483301
Os10g0550900 [Oryza sativa Japonica Group]
0.749499

Oryza sativa Japonica Group
3496
4819

&gt:gi|78708991|gb|ABB47966.1|

Proline dehydrogenase family protein, expressed

[Oryza sativa Japonica Group]

&gt:gi|113639853|dbj|BAF27158.1|

Os10g0550900 [Oryza sativa Japonica Group]

&gt:gi|215768044|dbj|BAH00273.1|

unnamed protein product

[Oryza sativa Japonica Group]

AAG13467
20143586
putative proline oxidase
0.731463

Oryza sativa Japonica Group
3497
4820

[Oryza sativa Japonica Group]

471-490
AAV64209
55741054
unknown [Zea mays]
1

Zea mays

3498
4821

789-808
NP_001151285
226528965
plastid-specific 30S ribosomal protein 1 [Zea mays]
1

Zea mays

3499
4822

&gt:gi|195645526|gb|ACG42231.1| plastid-specific

30S ribosomal protein 1 [Zea mays]

XP_002466065
242037340
hypothetical protein SORBIDRAFT_01g000590
0.779935

Sorghum bicolor

3500
4823

[Sorghum bicolor]

&gt:gi|241919919|gb|EER93063.1|

hypothetical protein SORBIDRAFT_01g000590

[Sorghum bicolor]

79-98
NP_001147623
226499377
WRKY11 - superfamily of TFs having WRKY
1

Zea mays

3501
4824

and zinc finger domains [Zea mays]

&gt:gi|194700780|gb|ACF84474.1|

unknown [Zea mays]

&gt:gi|195612626|gb|ACG28143.1|

WRKY11 - superfamily of TFs having WRKY

and zinc finger domains [Zea mays]

XP_002455987
242053682
hypothetical protein SORBIDRAFT_03g028530
0.892045

Sorghum bicolor

3502
4825

[Sorghum bicolor]

&gt:gi|241927962|gb|EES01107.1|

hypothetical protein SORBIDRAFT_03g028530

[Sorghum bicolor]

545-564
XP_002446670
242073467
hypothetical protein SORBIDRAFT_06g020170
1

Sorghum bicolor

3503
4826

[Sorghum bicolor]

&gt:gi|241937853|gb|EES10998.1|

hypothetical protein SORBIDRAFT_06g020170

[Sorghum bicolor]

NP_001151349
226528885
eukaryotic translation initiation factor 4B
0.905838

Zea mays

3504
4827

[Zea mays]

&gt:gi|195646008|gb|ACG42472.1|

eukaryotic translation initiation factor 4B

[Zea mays]

BAH01553
116012715
unnamed protein product
0.785311

Oryza sativa Japonica Group
3505
4828

[Oryza sativa Japonica Group]

EEE61194
54398660
hypothetical protein OsJ_15202
0.755179

Oryza sativa Japonica Group
3506

[Oryza sativa Japonica Group]

CAE05890
38605759
OSJNBa0044K18.31
0.774011

Oryza sativa Japonica Group
3507
4829

[Oryza sativa Japonica Group]

AAC28254
3372235
eukaryotic translation initiation factor 4B
0.711864

Triticum aestivum

3508
4830

[Triticum aestivum]

BAJ97809
326531609
predicted protein
0.721281

Hordeum vulgare subsp. vulgare
3509
4831

[Hordeum vulgare subsp. vulgare]

459-478
NP_001168251
293332880
hypothetical protein LOC100382014
1

Zea mays

3510
4832

[Zea mays]

&gt:gi|223947025|gb|ACN27596.1|

unknown [Zea mays]

741-760
ACN27595
223947022
unknown [Zea mays]
1

Zea mays

3511
4833

EAZ17908
54398660
hypothetical protein OsJ_33455
0.766633

Oryza sativa Japonica Group
3512

[Oryza sativa Japonica Group]

EAY80442
54362548
hypothetical protein OsI_35624
0.765609

Oryza sativa Indica Group
3513

[Oryza sativa Indica Group]

NP_001067561
115484834
Os11g0232100 [Oryza sativa Japonica Group]
0.765609

Oryza sativa Japonica Group
3514
4834

&gt:gi|62734108|gb|AAX96217.1|

Leucine Rich Repeat, putative

[Oryza sativa Japonica Group]

&gt:gi|77549387|gb|ABA92184.1|

Leucine Rich Repeat family protein, expressed

[Oryza sativa Japonica Group]

&gt:gi|113644783|dbj|BAF27924.1|

Os11g0232100 [Oryza sativa Japonica Group]

BAJ87631
326511233
predicted protein
0.729785

Hordeum vulgare subsp. vulgare
3515
4835

[Hordeum vulgare subsp. vulgare]

BAJ97282
326526530
predicted protein
0.728762

Hordeum vulgare subsp. vulgare
3516
4836

[Hordeum vulgare subsp. vulgare]

1744-1763
NP_001159284
259490169
hypothetical protein LOC100304374
1

Zea mays

3517
4837

[Zea mays]

&gt:gi|223943193|gb|ACN25680.1|

unknown [Zea mays]

XP_002463079
242050669
hypothetical protein SORBIDRAFT_02g037440
0.856041

Sorghum bicolor

3518
4838

[Sorghum bicolor]

&gt:gi|241926456|gb|EER99600.1|

hypothetical protein SORBIDRAFT_02g037440

[Sorghum bicolor]

549-568
NP_001047898
115448236
Os02g0710900 [Oryza sativa Japonica Group]
1

Oryza sativa Japonica Group
3519
4839

&gt:gi|41052647|dbj|BAD07495.1|

putative growth regulator

[Oryza sativa Japonica Group]

&gt:gi|41052863|dbj|BAD07777.1|

putative growth regulator

[Oryza sativa Japonica Group]

&gt:gi|113537429|dbj|BAF09812.1|

Os02g0710900 [Oryza sativa Japonica Group]

165-184
XP_002455851
242053410
hypothetical protein SORBIDRAFT_03g026180
1

Sorghum bicolor

3520
4840

[Sorghum bicolor]

&gt:gi|241927826|gb|EES00971.1|

hypothetical protein SORBIDRAFT_03g026 180

[Sorghum bicolor]

NP_001130177
212275443
hypothetical protein LOC100191271
0.944149

Zea mays

3521
4841

[Zea mays]

&gt:gi|194688476|gb|ACF78322.1|

unknown [Zea mays]

&gt:gi|195639048|gb|ACG38992.1|

integral membrane protein [Zea mays]

&gt:gi|219888143|gb|ACL54446.1|

unknown [Zea mays]

&gt:gi|224030309|gb|ACN34230.1|

unknown [Zea mays]

NP_001043423
115437959
Os01g0585100 [Oryza sativa Japonica Group]
0.867021

Oryza sativa Japonica Group
3522
4842

&gt:gi|14588680|dbj|BAB61845.1|

unknown protein

[Oryza sativa Japonica Group]

&gt:gi|21644683|dbj|BAC01240.1|

unknown protein

[Oryza sativa Japonica Group]

&gt:gi|113532954|dbj|BAF05337.1|

Os01g0585100 [Oryza sativa Japonica Group]

&gt:gi|215697604|dbj|BAG91598.1|

unnamed protein product

[Oryza sativa Japonica Group]

EAZ12481
54398660
hypothetical protein OsJ_02378
0.867021

Oryza sativa Japonica Group
3523

[Oryza sativa Japonica Group]

EAY74703
54362548
hypothetical protein OsI_02596
0.864362

Oryza sativa Indica Group
3524

[Oryza sativa Indica Group]

BAJ96508
326517031
predicted protein
0.856383

Hordeum vulgare subsp. vulgare
3525
4843

[Hordeum vulgare subsp. vulgare]

XP_002280579
225444823
PREDICTED: hypothetical protein
0.712766

Vitis vinifera

3526
4844

[Vitis vinifera]

ACU22841
255644677
unknown [Glycine max]
0.712766

Glycine max

3527
4845

XP_002514086
255546052
conserved hypothetical protein
0.712766

Ricinus communis

3528
4846

[Ricinus communis]

&gt:gi|223546542|gb|EEF48040.1|

conserved hypothetical protein

[Ricinus communis]

1215-1234
NP_001146872
226501845
gibberellin 2-beta-dioxygenase
1

Zea mays

3529
4847

[Zea mays]

&gt:gi|195604518|gb|ACG24089.1|

gibberellin 2-beta-dioxygenase

[Zea mays]

BAJ88432
326522772
predicted protein
0.742604

Hordeum vulgare subsp. vulgare
3530
4848

[Hordeum vulgare subsp. vulgare]

725-744
EEE68876
54398660
hypothetical protein OsJ_27688
1

Oryza sativa Japonica Group
3531

[Oryza sativa Japonica Group]

1926-1945
NP_001159342
259489829
hypothetical protein LOC100304436
1

Zea mays

3532
4849

[Zea mays]

&gt:gi|223943517|gb|ACN25842.1|

unknown [Zea mays]

632-651
XP_002449308
242068062
hypothetical protein SORBIDRAFT_05g007490
1

Sorghum bicolor

3533
4850

[Sorghum bicolor]

&gt:gi|241935151|gb|EES08296.1|

hypothetical protein SORBIDRAFT_05g007490

[Sorghum bicolor]

1268-1287
XP_002443799
242078060
hypothetical protein SORBIDRAFT_07g002260
1

Sorghum bicolor

3534
4851

[Sorghum bicolor]

&gt:gi|241940149|gb|EES13294.1|

hypothetical protein SORBIDRAFT_07g002260

[Sorghum bicolor]

BAJ93280
326526206
predicted protein
0.767241

Hordeum vulgare subsp. vulgare
3535
4852

[Hordeum vulgare subsp. vulgare]

189-208
NP_001151301
226508349
protein binding protein [Zea mays]
1

Zea mays

3536
4853

&gt:gi|195645662|gb|ACG42299.1|

protein binding protein [Zea mays]

XP_002454380
242066181
hypothetical protein SORBIDRAFT_04g029720
0.825

Sorghum bicolor

3537
4854

[Sorghum bicolor]

&gt:gi|241934211|gb|EES07356.1|

hypothetical protein SORBIDRAFT_04g029720

[Sorghum bicolor]

NP_001152525
226508021
protein binding protein [Zea mays]
0.79

Zea mays

3538
4855

&gt:gi|195657115|gb|ACG48025.1|

protein binding protein [Zea mays]

241-260
NP_001144625
226498917
hypothetical protein LOC100277643
1

Zea mays

3539
4856

[Zea mays]

&gt:gi|195644788|gb|ACG41862.1|

hypothetical protein [Zea mays]

ACR36806
238011541
unknown [Zea mays]
0747967

Zea mays

3540
4857

135-154
NP_001151654
226533332
anthocyanin regulatory C1 protein [Zea mays]
1

Zea mays

3541
4858

&gt:gi|195648418|gb|ACG43677.1lanthocyanin

regulatory C1 protein [Zea mays]

317-336
NP_001148026
226530490
RING-H2 finger protein ATL2K [Zea mays]
1

Zea mays

3542
4859

&gt:gi|195615316|gb|ACG29488.1|

RING-H2 finger protein ATL2K [Zea mays]

XP_002456372
242054452
hypothetical protein SORBIDRAFT_03g034930
0.863071

Sorghum bicolor

3543
4860

[Sorghum bicolor]

&gt:gi|241928347|gb|EES01492.1|

hypothetical protein SORBIDRAFT_03g034930

[Sorghum bicolor]

NP_001148308
226499733
RING-H2 finger protein ATL2K [Zea mays]
0.792531

Zea mays

3544
4861

&gt:gi|195617376|gb|ACG30518.1|

RING-H2 finger protein ATL2K [Zea mays]

ACN33508
224028864
unknown [Zea mays]
0.809129

Zea mays

3545
4862

Predicted
22-Mar
EEC68352
54362548
hypothetical protein OsI_36482
1

Oryza sativa Indica Group
3546

zma

[Oryza sativa Indica Group]

mir

50481

NP_001068093
297612029
Os11g0557700 [Oryza sativa Japonica Group]
0.995951

Oryza sativa Japonica Group
3547
4863

&gt:gi|77551490|gb|ABA94287.1|

protease, putative, expressed

[Oryza sativa Japonica Group]

&gt:gi|113645315|dbj|BAF28456.1|

Os11g0557700 [Oryza sativa Japonica Group]

&gt:gi|215701208|dbj|BAG92632.1|

unnamed protein product

[Oryza sativa Japonica Group]

&gt:gi|215741610|dbj|BAG98105.1|

unnamed protein product

[Oryza sativa Japonica Group]

&gt:gi|222616146|gb|EEE52278.1|

hypothetical protein OsJ_34257

[Oryza sativa Japonica Group]

BAJ87085
326509738
predicted protein
0.882591

Hordeum vulgare subsp. vulgare
3548
4864

[Hordeum vulgare subsp. vulgare]

NP_001151887
226509855
S-adenosylmethionine-dependent
0.850202

Zea mays

3549
4865

methyltransferase/catalytic [Zea mays]

&gt:gi|195650607|gb|ACG44771.1|

S-adenosylmethionine-dependent

methyltransferase/catalytic [Zea mays]

XP_002449700
242068846
hypothetical protein SORBIDRAFT_05g021800
0.765182

Sorghum bicolor

3550
4866

[Sorghum bicolor]

&gt:gi|241935543|gb|EES08688.1|

hypothetical protein SORBIDRAFT_05g021800

[Sorghum bicolor]

336-355
ACN35785
224033418
unknown [Zea mays]
1

Zea mays

3551
4867

NP_001147826
226499285
aspartic-type endopeptidase/pepsin A
0.93186

Zea mays

3552
4868

[Zea mays]

&gt:gi|195613980|gb|ACG28820.1|

aspartic-type endopeptidase/pepsin A

[Zea mays]

XP_002437603
242094225
hypothetical protein SORBIDRAFT_10g030330
0.756906

Sorghum bicolor

3553
4869

[Sorghum bicolor]

&gt:gi|241915826|gb|EER88970.1|

hypothetical protein SORBIDRAFT_10g030330

[Sorghum bicolor]

88-107
BAK07450
326520382
predicted protein
1

Hordeum vulgare subsp. vulgare
3554
4870

[Hordeum vulgare subsp. vulgare]

BAJ96089
326512215
predicted protein
0.999001

Hordeum vulgare subsp. vulgare
3555
4871

[Hordeum vulgare subsp. vulgare]

BAJ86216
326503419
predicted protein
0.953047

Hordeum vulgare subsp. vulgare
3556
4872

[Hordeum vulgare subsp. vulgare]

NP_001182877
308081604
hypothetical protein LOC100501149
0.865135

Zea mays

3557
4873

[Zea mays]

&gt:gi|238007924|gb|ACR34997.1|

unknown [Zea mays]

BAD25508
41152728
putative copper-exporting ATPase
0.875125

Oryza sativa Japonica Group
3558

[Oryza sativa Japonica Group]

NP_001046033
115444506
Os02g0172600 [Oryza sativa Japonica Group]
0.875125

Oryza sativa Japonica Group
3559
4874

&gt:gi|113535564|dbj|BAF07947.1|

Os02g0172600 [Oryza sativa Japonica Group]

EEC72585
54362548
hypothetical protein OsI_06035
0.87013

Oryza sativa Indica Group
3560

[Oryza sativa Indica Group]

BAJ96159
326514343
predicted protein
0.827173

Hordeum vulgare subsp. vulgare
3561
4875

[Hordeum vulgare subsp. vulgare]

&gt:gi|326528265|dbj|BAJ93314.1|

predicted protein

[Hordeum vulgare subsp. vulgare]

XP_002438813
242096645
hypothetical protein SORBIDRAFT_10g026600
0.822178

Sorghum bicolor

3562
4876

[Sorghum bicolor]

&gt:gi|241917036|gb|EER90180.1|

hypothetical protein SORBIDRAFT_10g026600

[Sorghum bicolor]

666-685
NP_001150862
226510390
LOC100284495 [Zea mays]
1

Zea mays

3563
4877

&gt:gi|195642440|gb|ACG40688.1|

helix-loop-helix DNA-binding domain containing

protein [Zea mays]

XP_002456792
242055292
hypothetical protein SORBIDRAFT_03g042860
0.846797

Sorghum bicolor

3564
4878

[Sorghum bicolor]

&gt:gi|241928767|gb|EES01912.1|

hypothetical protein SORBIDRAFT_03g042860

[Sorghum bicolor]

493-512
NP_001144018
226499443
hypothetical protein LOC100276839
1

Zea mays

3565
4879

[Zea mays]

&gt:gi|195635535|gb|ACG37236.1|

hypothetical protein [Zea mays]

XP_002438996
242097011
hypothetical protein SORBIDRAFT_10g029660
0.84058

Sorghum bicolor

3566
4880

[Sorghum bicolor]

&gt:gi|241917219|gb|EER90363.1|

hypothetical protein SORBIDRAFT_10g029660

[Sorghum bicolor]

330-349
NP_001105960
162460273
WUS1 protein [Zea mays]
1

Zea mays

3567
4881

&gt:gi|116811056|emb|CAJ84136.1|

WUS1 protein [Zea mays]

XP_002448707
242077541
hypothetical protein SORBIDRAFT_06g031880
0.705128

Sorghum bicolor

3568
4882

[Sorghum bicolor]

&gt:gi|241939890|gb|EES13035.1|

hypothetical protein SORBIDRAFT_06g03 1880

[Sorghum bicolor]

739-758
ACF82946
194697723
unknown [Zea mays]
1

Zea mays

3569
4883

EAY95236
54362548
hypothetical protein OsI_17053
0.761719

Oryza sativa Indica Group
3570

[Oryza sativa Indica Group]

XP_002446966
242074059
hypothetical protein SORBIDRAFT_06g025990
0.757813

Sorghum bicolor

3571
4884

[Sorghum bicolor]

&gt:gi|241938149|gb|EES11294.1|

hypothetical protein SORBIDRAFT_06g025990

[Sorghum bicolor]

NP_001053615
115460029
Os04g0573900 [Oryza sativa Japonica Group]
0.759766

Oryza sativa Japonica Group
3572
4885

&gt:gi|38605952|emb|CAD41666.3|

OSJNBa0019K04.13 [Oryza sativa Japonica Group]

&gt:gi|113565186|dbj|BAF15529.1|

Os04g0573900 [Oryza sativa Japonica Group]

NP_001182854
308044212
hypothetical protein LOC100501109
0.728516

Zea mays

3573
4886

[Zea mays]

&gt:gi|238007736|gb|ACR34903.1|

unknown [Zea mays]

1071-1090
NP_001145817
226491437
hypothetical protein LOC100279324
1

Zea mays

3574
4887

[Zea mays]

&gt:gi|219884539|gb|ACL52644.1|

unknown [Zea mays]

XP_002460158
242044573
hypothetical protein SORBIDRAFT_02g023600
0.773956

Sorghum bicolor

3575
4888

[Sorghum bicolor]

&gt:gi|241923535|gb|EER96679.1|

hypothetical protein SORBIDRAFT_02g023600

[Sorghum bicolor]

153-172
XP_002455017
242051742
hypothetical protein SORBIDRAFT_03g003020
1

Sorghum bicolor

3576
4889

[Sorghum bicolor]

&gt:gi|241926992|gb|EES00137.1|

hypothetical protein SORBIDRAFT_03g003020

[Sorghum bicolor]

513-532
NP_001140853
226509373
hypothetical protein LOC100272929
1

Zea mays

3577
4890

[Zea mays]

&gt:gi|194701444|gb|ACF84806.1|

unknown [Zea mays]

&gt:gi|194703860|gb|ACF86014.1|

unknown [Zea mays]

&gt:gi|195641672|gb|ACG40304.1|

hypothetical protein [Zea mays]

NP_001144670
226506299
hypothetical protein LOC100277696
0.82243

Zea mays

3578
4891

[Zea mays]

&gt:gi|194708364|gb|ACF88266.1|

unknown [Zea mays]

&gt:gi|195645476|gb|ACG42206.1|

hypothetical protein [Zea mays]

XP_002460312
242044881
hypothetical protein SORBIDRAFT_02g026310
0.75

Sorghum bicolor

3579
4892

[Sorghum bicolor]

&gt:gi|241923689|gb|EER96833.1|

hypothetical protein SORBIDRAFT_02g026310

[Sorghum bicolor]

420-439
NP_001150595
226507979
transferase, transferring glycosyl groups
1

Zea mays

3580
4893

[Zea mays]

&gt:gi|195640434|gb|ACG39685.1|

transferase, transferring glycosyl groups

[Zea mays]

538-557
EEE57671
54398660
hypothetical protein OsJ_08115
1

Oryza sativa Japonica Group
3581

[Oryza sativa Japonica Group]

76-95
ACN31863
223975350
unknown [Zea mays]
1

Zea mays

3582
4894

ACG44151
195649366
choline-phosphate cytidylyltransferase B
0.990164

Zea mays

3583
4895

[Zea mays]

XP_002445104
242080670
hypothetical protein SORBIDRAFT_07g004150
0.95082

Sorghum bicolor

3584
4896

[Sorghum bicolor]

&gt:gi|241941454|gb|EES14599.1|

hypothetical protein SORBIDRAFT_07g004150

[Sorghum bicolor]

NP_001061052
115474910
Os08g0161800 [Oryza sativa Japonica Group]
0.836066

Oryza sativa Japonica Group
3585
4897

&gt:gi|37806270|dbj|BAC99786.1|

putative CTP: phosphorylcholine cytidylyltransferase

[Oryza sativa Japonica Group]

&gt:gi|113623021|dbj|BAF22966.1|

Os08g0161800 [Oryza sativa Japonica Group]

&gt:gi|215765435|dbj|BAG87132.1|

unnamed protein product

[Oryza sativa Japonica Group]

&gt:gi|218200513|gb|EEC82940.1|

hypothetical protein OsI_27913

[Oryza sativa Indica Group]

EEE68089
54398660
hypothetical protein OsJ_26135
0.832787

Oryza sativa Japonica Group
3586

[Oryza sativa Japonica Group]

32-51
NP_001137004
219362694
hypothetical protein LOC100217167
1

Zea mays

3587
4898

[Zea mays]

&gt:gi|195639104|gb|ACG39020.1|

DNA binding protein [Zea mays]

&gt:gi|224034497|gb|ACN36324.1|

unknown [Zea mays]

ACF83052
194697935
unknown [Zea mays]
0.994334

Zea mays

3588
4899

XP_002448987
242067420
hypothetical protein SORBIDRAFT_05g002940
0.869688

Sorghum bicolor

3589
4900

[Sorghum bicolor]

&gt:gi|241934830|gb|EES07975.1|

hypothetical protein SORBIDRAFT_05g002940

[Sorghum bicolor]

NP_001065753
115484182
Os11g0149100 [Oryza sativa Japonica Group]
0.705382

Oryza sativa Japonica Group
3590
4901

&gt:gi|62701672|gb|AAX92745.1|

expressed protein

[Oryza sativa Japonica Group]

&gt:gi|77548692|gb|ABA91489.1|

expressed protein

[Oryza sativa Japonica Group]

&gt:gi|113644457|dbj|BAF27598.1|

Os11g0149100 [Oryza sativa Japonica Group]

XP_002441824
242082797
hypothetical protein SORBIDRAFT_08g002940
0.798867

Sorghum bicolor

3591
4902

[Sorghum bicolor]

&gt:gi|241942517|gb|EES15662.1|

hypothetical protein SORBIDRAFT_08g002940

[Sorghum bicolor]

573-592
ACG34322
195624983
fructokinase-2 [Zea mays]
1

Zea mays

3592
4903

&gt:gi|195626972|gb|ACG35316.1|

fructokinase-2 [Zea mays]

ACG38926
195638915
fructokinase-2 [Zea mays]
0.997015

Zea mays

3593
4904

ACG34312
195624963
fructokinase-2 [Zea mays]
0.991045

Zea mays

3594
4905

ACG33449
195623237
fructokinase-2 [Zea mays]
0.991045

Zea mays

3595
4906

ACG39031
195639125
fructokinase-2 [Zea mays]
0.98806

Zea mays

3596
4907

NP_001060837
115474480
Os08g0113100 [Oryza sativa Japonica Group]
0.901493

Oryza sativa Japonica Group
3597
4908

&gt:gi|122234591|sp|Q0J8G4.1|SCRK2_ORYSJ

RecName: Full = Fructokinase-2;

AltName: Full = Fructokinase II;

AltName: Full = OsFKII

&gt:gi|158513662|sp|A2YQL4.2|SCRK2_ORYSI

RecName: Full = Fructokinase-2;

AltName: Full = Fructokinase II;

AltName: Full = OsFKII

&gt:gi|16566704|gb|AAL26573.1|AF429947_1

putative fructokinase II

[Oryza sativa]

&gt:gi|32352126|dbj|BAC78556.1|

fructokinase [Oryza sativa Japonica Group]

&gt:gi|42408363|dbj|BAD09515.1|

putative fructokinase

[Oryza sativa Japonica Group]

&gt:gi|113622806|dbj|BAF22751.1|

Os08g0113100 [Oryza sativa Japonica Group]

&gt:gi|125601970|gb|EAZ41295.1|

hypothetical protein OsJ_25803

[Oryza sativa Japonica Group]

&gt:gi|215687214|dbj|BAG91779.1|

unnamed protein product

[Oryza sativa Japonica Group]

&gt:gi|215708813|dbj|BAG94082.1|

unnamed protein product

[Oryza sativa Japonica Group]

EAZ05375
54362548
hypothetical protein OsI_27579
0.901493

Oryza sativa Indica Group
3598

[Oryza sativa Indica Group]

BAK06949
326513417
predicted protein
0.862687

Hordeum vulgare subsp. vulgare
3599
4909

[Hordeum vulgare subsp. vulgare]

333-352
XP_002467133
242039476
hypothetical protein SORBIDRAFT_01g020150
1

Sorghum bicolor

3600
4910

[Sorghum bicolor]

&gt:gi|241920987|gb|EER94131.1|

hypothetical protein SORBIDRAFT_01g020150

[Sorghum bicolor]

ACN29136
223950104
unknown [Zea mays]
0.958874

Zea mays

3601
4911

NP_001064764
115482341
Os10g0457600 [Oryza sativa Japonica Group]
0.904762

Oryza sativa Japonica Group
3602
4912

&gt:gi|14140293|gb|AAK54299.1|AC034258_17

putative thiolase [Oryza sativa Japonica Group]

&gt:gi|31432470|gb|AAP54100.1|

3-ketoacyl-CoA thiolase 2, peroxisomal

precursor, putative, expressed

[Oryza sativa Japonica Group]

&gt:gi|113639373|dbj|BAF26678.1|

Os10g0457600 [Oryza sativa Japonica Group]

&gt:gi|125575033|gb|EAZ16317.1|

hypothetical protein OsJ_31778

[Oryza sativa Japonica Group]

&gt:gi|215704141|dbj|BAG92981.1|

unnamed protein product

[Oryza sativa Japonica Group]

EEC67095
54362548
hypothetical protein OsI_33888
0.904762

Oryza sativa Indica Group
3603

[Oryza sativa Indica Group]

XP_002285653
225433423
PREDICTED: hypothetical protein isoform 1
0.772727

Vitis vinifera

3604
4913

[Vitis vinifera]

&gt:gi|297741919|emb|CBI33354.3|

unnamed protein product

[Vitis vinifera]

CAN81585
147866528
hypothetical protein VITISV_023191
0.772727

Vitis vinifera

3605

[Vitis vinifera]

NP_001131193
212723031
hypothetical protein LOC100192501
0.766234

Zea mays

3606
4914

[Zea mays]

&gt:gi|194690834|gb|ACF79501.1|

unknown [Zea mays]

ACG36949
195634960
3-ketoacyl-CoA thiolase 2, peroxisomal
0.764069

Zea mays

3607
4915

precursor [Zea mays]

XP_002299284
224057613
predicted protein [Populus trichocarpa]
0.768398

Populus trichocarpa

3608
4916

&gt:gi|222846542|gb|EEE84089.1|

predicted protein [Populus trichocarpa]

ACV70033
257815408
3-ketoacyl CoA thiolase 2
0.764069

Petunia × hybrida

3609
4917

[Petunia × hybrida]

135-154
XP_002437297
242093613
hypothetical protein SORBIDRAFT_10g024430
1

Sorghum bicolor

3610
4918

[Sorghum bicolor]

&gt:gi|241915520|gb|EER88664.1|

hypothetical protein SORBIDRAFT_10g024430

[Sorghum bicolor]

ACR36817
238011563
unknown [Zea mays]
0.875

Zea mays

3611
4919

NP_001147256
226507503
LOC100280864 [Zea mays]
0.871711

Zea mays

3612
4920

&gt:gi|195609146|gb|ACG26403.1|

bZIP transcription factor protein

[Zea mays]

348-367
XP_002437473
242093965
hypothetical protein SORBIDRAFT_10g027790
1

Sorghum bicolor

3613
4921

[Sorghum bicolor]

&gt:gi|241915696|gb|EER88840.1|

hypothetical protein SORBIDRAFT_10g027790

[Sorghum bicolor]

NP_001058399
115469599
Os06g0685700 [Oryza sativa Japonica Group]
0.858956

Oryza sativa Japonica Group
3614
4922

&gt:gi|75253259|sp|Q653H7.1|ARFR_ORYSJ

RecName: Full = Auxin response factor 18;

AltName: Full = OsARF10

&gt:gi|52076670|dbj|BAD45570.1|

putative auxin response factor 10

[Oryza sativa Japonica Group]

&gt:gi|52077007|dbj|BAD46040.1|

putative auxin response factor 10

[Oryza sativa Japonica Group]

&gt:gi|113596439|dbj|BAF20313.1|

Os06g0685700 [Oryza sativa Japonica Group]

&gt:gi|215713413|dbj|BAG94550.1|

unnamed protein product

[Oryza sativa Japonica Group]

BAB85919
19352050
auxin response factor 10
0.857546

Oryza sativa

3615
4923

[Oryza sativa]

EEC81202
54362548
hypothetical protein OsI_24228
0.722144

Oryza sativa Indica Group
3616

[Oryza sativa Indica Group]

EEE66240
54398660
hypothetical protein OsJ_22412
0.77292

Oryza sativa Japonica Group
3617

[Oryza sativa Japonica Group]

85-104
BAD12057
44885915
plastidic glutamine synthetase
1

Phragmites australis

3618
4924

[Phragmites australis]

&gt:gi|44885918|dbj|BAD12058.1|

plastidic glutamine synthetase

[Phragmites australis]

NP_001054133
115461065
Os04g0659100 [Oryza sativa Japonica Group]
0.93007

Oryza sativa Japonica Group
3619
4925

&gt:gi|121343|sp|P14655.1|GLNA2_ORYSJ

RecName: Full = Glutamine synthetase, chloroplastic;

AltName: Full = Glutamate--ammonia ligase;

AltName: Full = OsGS2;

Short = GS2; Flags: Precursor

&gt:gi|20370|emb|CAA32462.1|

unnamed protein product [Oryza sativa]

&gt:gi|38345192|emb|CAE02885.2|

OSJNBa0015K02.2 [Oryza sativa Japonica Group]

&gt:gi|38346409|emb|CAE54574.1|

OSJNBa0011F23.5 [Oryza sativa Japonica Group]

&gt:gi|113565704|dbj|BAF16047.1|

Os04g0659100 [Oryza sativa Japonica Group]

&gt:gi|116310855|emb|CAH67797.1|

OSIGBa0132E09-OSIGBa0108L24.11

[Oryza sativa Indica Group]

&gt:gi|218195744|gb|EEC78171.1|

hypothetical protein OsI_17756

[Oryza sativa Indica Group]

&gt:gi|222629702|gb|EEE61834.1|

hypothetical protein OsJ_16481

[Oryza sativa Japonica Group]

BAD12059
44885919
plastidic glutamine synthetase
0.913753

Phragmites australis

3620
4926

[Phragmites australis]

AAZ30062
71362639
plastid glutamine synthetase isoform GS2c
0.864802

Triticum aestivum

3621
4927

[Triticum aestivum]

&gt:gi|73672739|gb|AAZ80474.1| GS2

[Triticum aestivum]

&gt:gi|251832981|gb|ACT22493.1|

plastid glutamine synthetase 2

[Triticum aestivum]

&gt:gi|251832984|gb|ACT22495.1|

plastid glutamine synthetase 2

[Triticum aestivum]

&gt:gi|251832990|gb|ACT22498.1|

plastid glutamine synthetase 2

[Triticum aestivum]

&gt:gi|334855519|gb|AEH16638.1|

glutamine synthetase

[Triticum aestivum]

BAJ91545
326509256
predicted protein
0.864802

Hordeum vulgare subsp. vulgare
3622
4928

[Hordeum vulgare subsp. vulgare]

ACT22496
251832985
plastid glutamine synthetase 2
0.862471

Triticum aestivum

3623
4929

[Triticum aestivum]

&gt:gi|251832988|gb|ACT22497.1|

plastid glutamine synthetase 2

[Triticum aestivum]

ACT22500
251832991
plastid glutamine synthetase 2
0.862471

Triticum aestivum

3624
4930

[Triticum aestivum]

CAA34131
18985
unnamed protein product
0.862471

Hordeum vulgare subsp. vulgare
3625
4931

[Hordeum vulgare subsp. vulgare]

BAJ95492
326505641
predicted protein
0.86014

Hordeum vulgare subsp. vulgare
3626
4932

[Hordeum vulgare subsp. vulgare]

AAL87183
19387261
putative precursor chloroplastic glutamine
0.902098

Oryza sativa Japonica Group
3627

synthetase [Oryza sativa Japonica Group]

252-271
NP_001182863
308080633
hypothetical protein LOC100501125
1

Zea mays

3628
4933

[Zea mays]

&gt:gi|238007838|gb|ACR34954.1|

unknown [Zea mays]

AAK28346
13506811
receptor-like protein kinase 1 [Zea mays]
0.871329

Zea mays

3629
4934

XP_002445874
242082210
hypothetical protein SORBIDRAFT_07g027220
0.815385

Sorghum bicolor

3630
4935

[Sorghum bicolor]

&gt:gi|241942224|gb|EES15369.1|

hypothetical protein SORBIDRAFT_07g027220

[Sorghum bicolor]

888-907
ACG36535
195629787
fructokinase-2 [Zea mays]
1

Zea mays

3631
4936

NP_001060837
115474480
Os08g0113100 [Oryza sativa Japonica Group]
0.901493

Oryza sativa Japonica Group
3632
4937

&gt:gi|122234591|sp|QOJ8G4.1|SCRK2_ORYSJ

RecName: Full = Fructokinase-2;

AltName: Full = Fructokinase II;

AltName: Full = OsFKII

&gt:gi|158513662|sp|A2YQL4.2|SCRK2_ORYSI

RecName: Full = Fructokinase-2;

AltName: Full = Fructokinase II;

AltName: Full = OsFKII

&gt:gi|16566704|gb|AAL26573.1|AF429947_1

putative fructokinase II [Oryza sativa]

&gt:gi|32352126|dbj|BAC78556.1|

fructokinase [Oryza sativa Japonica Group]

&gt:gi|42408363|dbj|BAD09515.1|

putative fructokinase

[Oryza sativa Japonica Group]

&gt:gi|113622806|dbj|BAF22751.1|

Os08g0113100 [Oryza sativa Japonica Group]

&gt:gi|125601970|gb|EAZ41295.1|

hypothetical protein OsJ_25803

[Oryza sativa Japonica Group]

&gt:gi|215687214|dbj|BAG91779.1|

unnamed protein product

[Oryza sativa Japonica Group]

&gt:gi|215708813|dbj|BAG94082.1|

unnamed protein product

[Oryza sativa Japonica Group]

140-159
ACG30481
195617301
hypothetical protein [Zea mays]
1

Zea mays

3633
4938

ACG37907
195636877
hypothetical protein [Zea mays]
0.931034

Zea mays

3634
4939

ACF79048
194689927
unknown [Zea mays]
0.977011

Zea mays

3635
4940

ACG29425
195615189
hypothetical protein [Zea mays]
0.95977

Zea mays

3636
4941

&gt:gi|195649199|gb|ACG44067.1|

hypothetical protein [Zea mays]

NP_001144199
226501971
hypothetical protein LOC100277059
0.890805

Zea mays

3637
4942

[Zea mays]

&gt:gi|195638304|gb|ACG38620.1|

hypothetical protein [Zea mays]

EEC79730
54362548
hypothetical protein OsI_21063
0.787356

Oryza sativa Indica Group
3638

[Oryza sativa Indica Group]

XP_002441542
242091418
hypothetical protein SORBIDRAFT_09g029060
0.827586

Sorghum bicolor

3639
4943

[Sorghum bicolor]

&gt:gi|241946827|gb|EES19972.1|

hypothetical protein SORBIDRAFT_09g029060

[Sorghum bicolor]

NP_001056374
115465548
Os05g0571400 [Oryza sativa Japonica Group]
0.747126

Oryza sativa Japonica Group
3640
4944

&gt:gi|52353529|gb|AAU44095.1|

unknown protein

[Oryza sativa Japonica Group]

&gt:gi|113579925|dbj|BAF18288.1|

Os05g0571400 [Oryza sativa Japonica Group]

&gt:gi|215692864|dbj|BAG88284.1|

unnamed protein product

[Oryza sativa Japonica Group]

BAK01837
326489712
predicted protein
0.729885

Hordeum vulgare subsp. vulgare
3641
4945

[Hordeum vulgare subsp. vulgare]

&gt:gi|326513576|dbj|BAJ87807.1|

predicted protein

[Hordeum vulgare subsp. vulgare]

154-173
ACN35719
224033286
unknown [Zea mays]
1

Zea mays

3642
4946

1182-1201
XP_002445912
242082286
hypothetical protein SORBIDRAFT_07g027930
1

Sorghum bicolor

3643
4947

[Sorghum bicolor]

&gt:gi|241942262|gb|EES15407.1|

hypothetical protein SORBIDRAFT_07g027930

[Sorghum bicolor]

NP_001148257
226530356
protein kinase [Zea mays]
0.853273

Zea mays

3644
4948

&gt:gi|195616992|gb|ACG30326.1|

protein kinase [Zea mays]

&gt:gi|223974019|gb|ACN31197.1|

unknown [Zea mays]

1224-1243
NP_001130351
212274554
hypothetical protein LOC100191446
1

Zea mays

3645
4949

[Zea mays]

&gt:gi|194688912|gb|ACF78540.1|

unknown [Zea mays]

NP_001168165
293331166
hypothetical protein LOC100381917
0.883562

Zea mays

3646
4950

[Zea mays]

&gt:gi|223946413|gb|ACN27290.1|

unknown [Zea mays]

XP_002460448
242045153
hypothetical protein SORBIDRAFT_02g028250
0.849315

Sorghum bicolor

3647
4951

[Sorghum bicolor]

&gt:gi|241923825|gb|EER96969.1|

hypothetical protein SORBIDRAFT_02g028250

[Sorghum bicolor]

BAJ96874
326521341
predicted protein
0.719178

Hordeum vulgare subsp. vulgare
3648
4952

[Hordeum vulgare subsp. vulgare]

621-640
NP_001132310
212723631
hypothetical protein LOC100193752
1

Zea mays

3649
4953

[Zea mays]

&gt:gi|194694046|gb|ACF81107.1|

unknown [Zea mays]

NP_001150692
226531587
transmembrane receptor [Zea mays]
0.861842

Zea mays

3650
4954

&gt:gi|195641100|gb|ACG40018.1|

transmembrane receptor [Zea mays]

NP_001183230
308079992
hypothetical protein LOC100501618
0.785088

Zea mays

3651
4955

[Zea mays]

&gt:gi|238010202|gb|ACR36136.1|

unknown [Zea mays]

XP_002439928
242088190
hypothetical protein SORBIDRAFT_09g022750
0.791667

Sorghum bicolor

3652
4956

[Sorghum bicolor]

&gt:gi|241945213|gb|EES18358.1|

hypothetical protein SORBIDRAFT_09g022750

[Sorghum bicolor]

315-334
NP_001147345
226510092
AP2 domain containing protein [Zea mays]
1

Zea mays

3653
4957

&gt:gi|195610330|gb|ACG26995.1|

AP2 domain containing protein [Zea mays]

XP_002452378
242062177
hypothetical protein SORBIDRAFT_04g024690
0.884354

Sorghum bicolor

3654
4958

[Sorghum bicolor]

&gt:gi|241932209|gb|EES05354.1|

hypothetical protein SORBIDRAFT_04g024690

[Sorghum bicolor]

1284-1303
XP_002453161
242063743
hypothetical protein SORBIDRAFT_04g001020
1

Sorghum bicolor

3655
4959

[Sorghum bicolor]

&gt:gi|241932992|gb|EES06137.1|

hypothetical protein SORBIDRAFT_04g001020

[Sorghum bicolor]

NP_001132593
212722739
hypothetical protein LOC100194065
0.852332

Zea mays

3656
4960

[Zea mays]

&gt:gi|194694848|gb|ACF81508.1|

unknown [Zea mays]

XP_002445672
242081806
hypothetical protein SORBIDRAFT_07g023970
0.725389

Sorghum bicolor

3657
4961

[Sorghum bicolor]

&gt:gi|241942022|gb|EES15167.1|

hypothetical protein SORBIDRAFT_07g023970

[Sorghum bicolor]

EAZ13316
54398660
hypothetical protein OsJ_03238
0.722798

Oryza sativa Japonica Group
3658

[Oryza sativa Japonica Group]

BAD13218
42409221
putative MtN21
0.722798

Oryza sativa Japonica Group
3659
4962

[Oryza sativa Japonica Group]

NP_001172775
297720824
Os02g0114050 [Oryza sativa Japonica Group]
0.733161

Oryza sativa Japonica Group
3660
4963

&gt:gi|41052583|dbj|BAD07925.1|

putative nodulin MIN21

[Oryza sativa Japonica Group]

&gt:gi|41052778|dbj|BAD07647.1|

putative nodulin MIN21

[Oryza sativa Japonica Group]

&gt:gi|125580551|gb|EAZ21482.1|

hypothetical protein OsJ_05091

[Oryza sativa Japonica Group]

&gt:gi|218189915|gb|EEC72342.1|

hypothetical protein OsI_05563

[Oryza sativa Indica Group]

&gt:gi|255670546|dbj|BAH91504.1|

Os02g0114050 [Oryza sativa Japonica Group]

EAZ08018
54362548
hypothetical protein OsI_30283
0.720207

Oryza sativa Indica Group
3661

[Oryza sativa Indica Group]

760-779
XP_002446967
242074061
hypothetical protein SORBIDRAFT_06g026000
1

Sorghum bicolor

3662
4964

[Sorghum bicolor]

&gt:gi|241938150|gb|EES11295.1|

hypothetical protein SORBIDRAFT_06g026000

[Sorghum bicolor]

621-640
NP_001104903
162460262
protein terminal ear1 [Zea mays]
1

Zea mays

3663
4965

&gt:gi|75318510|sp|O65001.1|TE1_MAIZE

RecName: Full = Protein terminal ear1

&gt:gi|13540340|gb|AAK29419.1|AF348319_1

TERMINAL EAR1 [Zea mays]

&gt:gi|3153237|gb|AAC39463.1|

terminal ear1 [Zea mays]

XP_002456810
242055328
hypothetical protein SORBIDRAFT_03g043230
0.858232

Sorghum bicolor

3664
4966

[Sorghum bicolor]

&gt:gi|241928785|gb|EES01930.1|

hypothetical protein SORBIDRAFT_03g043230

[Sorghum bicolor]

84-103
XP_002437444
242093907
hypothetical protein SORBIDRAFT_10g027180
1

Sorghum bicolor

3665
4967

[Sorghum bicolor]

&gt:gi|241915667|gb|EER88811.1|

hypothetical protein SORBIDRAFT_10g027180

[Sorghum bicolor]

NP_001151503
226492640
rab geranylgeranyl transferase like protein
0.935065

Zea mays

3666
4968

[Zea mays]

&gt:gi|195647272|gb|ACG43104.1|

rab geranylgeranyl transferase like protein

[Zea mays]

BAJ96308
326514641
predicted protein
0.767677

Hordeum vulgare subsp. vulgare
3667
4969

[Hordeum vulgare subsp. vulgare]

BAJ94589
326496253
predicted protein
0.766234

Hordeum vulgare subsp. vulgare
3668
4970

[Hordeum vulgare subsp. vulgare]

EEC81176
54362548
hypothetical protein OsI_24155
0.774892

Oryza sativa Indica Group
3669

[Oryza sativa Indica Group]

NP_001058357
115469515
Os06g0677500 [Oryza sativa Japonica Group]
0.772006

Oryza sativa Japonica Group
3670
4971

&gt:gi|52076622|dbj|BAD45523.1|

putative Rab geranylgeranyl transferase,

a subunit [Oryza sativa Japonica Group]

&gt:gi|52076908|dbj|BAD45920.1|

putative Rab geranylgeranyl transferase,

a subunit [Oryza sativa Japonica Group]

&gt:gi|113596397|dbj|BAF20271.1|

Os06g0677500 [Oryza sativa Japonica Group]

&gt:gi|125598230|gb|EAZ38010.1|

hypothetical protein OsJ_22355

[Oryza sativa Japonica Group]

2063-2082
XP_002466382
242037974
hypothetical protein SORBIDRAFT_01g006780
1

Sorghum bicolor

3671
4972

[Sorghum bicolor]

&gt:gi|241920236|gb|EER93380.1|

hypothetical protein SORBIDRAFT_01g006780

[Sorghum bicolor]

NP_001147990
226508033
lectin-like receptor kinase 7 [Zea mays]
0.898975

Zea mays

3672
4973

&gt:gi|195615004|gb|ACG29332.1|

lectin-like receptor kinase 7 [Zea mays]

BAJ98654
326498452
predicted protein
0.778917

Hordeum vulgare subsp. vulgare
3673
4974

[Hordeum vulgare subsp. vulgare]

EAY91999
54362548
hypothetical protein OsI_13689
0.786237

Oryza sativa Indica Group
3674

[Oryza sativa Indica Group]

ABF99098
108705663
lectin receptor kinase 7, putative,
0.733529

Oryza sativa Japonica Group
3675

expressed [Oryza sativa Japonica Group]

EAZ28732
54398660
hypothetical protein OsJ_12752
0.733529

Oryza sativa Japonica Group
3676

[Oryza sativa Japonica Group]

318-337
NP_001150139
226506903
4-methyl-5-thiazole monophosphate biosynthesis
1

Zea mays

3677
4975

protein [Zea mays]

&gt:gi|195637064|gb|ACG38000.1|

4-methyl-5-thiazole monophosphate biosynthesis

protein [Zea mays]

NP_001130715
212274550
hypothetical protein LOC100191819
1.040921

Zea mays

3678
4976

[Zea mays]

&gt:gi|194689918|gb|ACF79043.1|

unknown [Zea mays]

XP_002457130
242055968
hypothetical protein SORBIDRAFT_03g001750
0.879795

Sorghum bicolor

3679
4977

[Sorghum bicolor]

&gt:gi|241929105|gb|EES02250.1|

hypothetical protein SORBIDRAFT_03g001750

[Sorghum bicolor]

XP_002457129
242055966
hypothetical protein SORBIDRAFT_03g001740
0.713555

Sorghum bicolor

3680
4978

[Sorghum bicolor]

&gt:gi|241929104|gb|EES02249.1|

hypothetical protein SORBIDRAFT_03g001740

[Sorghum bicolor]

247-266
ACF84329
194700489
unknown [Zea mays]
1

Zea mays

3681
4979

NP_001143181
226491793
hypothetical protein LOC100275681
0.983505

Zea mays

3682
4980

[Zea mays]

&gt:gi|195615484|gb|ACG29572.1|

hypothetical protein [Zea mays]

XP_002439532
242087398
hypothetical protein SORBIDRAFT_09g010410
0.775258

Sorghum bicolor

3683
4981

[Sorghum bicolor]

&gt:gi|241944817|gb|EES17962.1|

hypothetical protein SORBIDRAFT_09g010410

[Sorghum bicolor]

1371-1390
XP_002463817
242032844
hypothetical protein SORBIDRAFT_01g006730
1

Sorghum bicolor

3684
4982

[Sorghum bicolor]

&gt:gi|241917671|gb|EER90815.1|

hypothetical protein SORBIDRAFT_01g006730

[Sorghum bicolor]

ACF82838
238908755
unknown [Zea mays]
0.96789

Zea mays

3685
4983

ACG44256
195649576
hypothetical protein [Zea mays]
0.965596

Zea mays

3686
4984

NP_001141500
226490864
hypothetical protein LOC100273612
0.933486

Zea mays

3687
4985

[Zea mays]

&gt:gi|194704836|gb|ACF86502.1|

unknown [Zea mays]

&gt:gi|194707468|gb|ACF87818.1|

unknown [Zea mays]

EAY92004
54362548
hypothetical protein OsI_13693
0.848624

Oryza sativa Indica Group
3688

[Oryza sativa Indica Group]

EAZ28736
54398660
hypothetical protein OsJ_12756
0.848624

Oryza sativa Japonica Group
3689

[Oryza sativa Japonica Group]

NP_001051414
115455626
Os03g0773000 [Oryza sativa Japonica Group]
0.84633

Oryza sativa Japonica Group
3690
4986

&gt:gi|31745235|gb|AAP68895.1|

unknown protein

[Oryza sativa Japonica Group]

&gt:gi|108711308|gb|ABF99103.1|

expressed protein

[Oryza sativa Japonica Group]

&gt:gi|113549885|dbj|BAF13328.1|

Os03g0773000 [Oryza sativa Japonica Group]

AAP68894
28269488
unknown protein
0.768349

Oryza sativa Japonica Group
3691
4987

[Oryza sativa Japonica Group]

BAJ89011
326527918
predicted protein
0.729358

Hordeum vulgare subsp. vulgare
3692
4988

[Hordeum vulgare subsp. vulgare]

NP_001058837
115470476
Os07g0133500 [Oryza sativa Japonica Group]
0.722477

Oryza sativa Japonica Group
3693
4989

&gt:gi|32352156|dbj|BAC78571.1|

hypothetical protein

[Oryza sativa Japonica Group]

&gt:gi|34393412|dbj|BAC82946.1|

unknown protein

[Oryza sativa Japonica Group]

&gt:gi|50509299|dbj|BAD30606.1|

unknown protein

[Oryza sativa Japonica Group]

&gt:gi|113610373|dbj|BAF20751.1|

Os07g0133500 [Oryza sativa Japonica Group]

&gt:gi|125599028|gb|EAZ38604.1|

hypothetical protein OsJ_22992

[Oryza sativa Japonica Group]

&gt:gi|215741158|dbj|BAG97653.1|

unnamed protein product

[Oryza sativa Japonica Group]

338-357
XP_002465042
242035294
hypothetical protein SORBIDRAFT_01g03 1090
1

Sorghum bicolor

3694
4990

[Sorghum bicolor]

&gt:gi|241918896|gb|EER92040.1|

hypothetical protein SORBIDRAFT_01g03 1090

[Sorghum bicolor]

ACG29187
195614713
subtilisin-like protease precursor
0.934211

Zea mays

3695
4991

[Zea mays]

EAY79268
54362548
hypothetical protein OsI_34383
0.878947

Oryza sativa Indica Group
3696

[Oryza sativa Indica Group]

NP_001065109
115483031
Os10g0524600 [Oryza sativa Japonica Group]
0.876316

Oryza sativa Japonica Group
3697
4992

&gt:gi|20146761|gb|AAM12497.1|AC074232_24

putative serine protease

[Oryza sativa Japonica Group]

&gt:gi|27311277|gb|AAO00703.1|

putative serine protease

[Oryza sativa Japonica Group]

&gt:gi|31433153|gb|AAP54706.1|

Subtilisin N-terminal Region family protein,

expressed [Oryza sativa Japonica Group]

&gt:gi|113639718|dbj|BAF27023.1|

Os10g0524600 [Oryza sativa Japonica Group]

&gt:gi|125575456|gb|EAZ16740.1|

hypothetical protein OsJ_32216

[Oryza sativa Japonica Group]

&gt:gi|215697336|dbj|BAG91330.1|

unnamed protein product

[Oryza sativa Japonica Group]

NP_001048778
115450354
Os03g0119300 [Oryza sativa Japonica Group]
0.744737

Oryza sativa Japonica Group
3698
4993

&gt:gi|27452907|gb|AAO15291.1|

Putative serine protease

[Oryza sativa Japonica Group]

&gt:gi|108705882|gb|ABF93677.1|

Subtilisin N-terminal Region family protein,

expressed [Oryza sativa Japonica Group]

&gt:gi|113547249|dbj|BAF10692.1|

Os03g0119300

[Oryza sativa Japonica Group]

XP_002465976
242037162
hypothetical protein SORBIDRAFT_01g049280
0.731579

Sorghum bicolor

3699
4994

[Sorghum bicolor]

&gt:gi|241919830|gb|EER92974.1|

hypothetical protein SORBIDRAFT_01g049280

[Sorghum bicolor]

BAK05599
326490998
predicted protein
0.728947

Hordeum vulgare subsp. vulgare
3700
4995

[Hordeum vulgare subsp. vulgare]

&gt:gi|326496769|dbj|BAJ98411.1|

predicted protein

[Hordeum vulgare subsp. vulgare]

&gt:gi|326497201|dbj|BAK02185.1|

predicted protein

[Hordeum vulgare subsp. vulgare]

ACN30792
223973208
unknown [Zea mays]
0.715789

Zea mays

3701
4996

NP_001148151
226498389
xylem serine proteinase 1
0.714474

Zea mays

3702
4997

[Zea mays]

&gt:gi|195616146|gb|ACG29903.1|

xylem serine proteinase 1 precursor

[Zea mays]

2007-2026
XP_002465627
242036464
hypothetical protein SORBIDRAFT_01g042530
1

Sorghum bicolor

3703
4998

[Sorghum bicolor]

&gt:gi|241919481|gb|EER92625.1|

hypothetical protein SORBIDRAFT_01g042530

[Sorghum bicolor]

NP_001159302
259490447
hypothetical protein LOC100304394
0.919003

Zea mays

3704
4999

[Zea mays]

&gt:gi|223943285|gb|ACN25726.1|

unknown [Zea mays]

NP_001049417
115451632
Os03g0222100 [Oryza sativa Japonica Group]
0.806854

Oryza sativa Japonica Group
3705
5000

&gt:gi|108706910|gb|ABF94705.1|

MA3 domain-containing protein, putative,

expressed [Oryza sativa Japonica Group]

&gt:gi|113547888|dbj|BAF11331.1|

Os03g0222100 [Oryza sativa Japonica Group]

AAN05329
22417315
Putative topoisomerase
0.805296

Oryza sativa Japonica Group
3706
5001

[Oryza sativa Japonica Group]

&gt:gi|125542940|gb|EAY89079.1|

hypothetical protein OsI_10565

[Oryza sativa Indica Group]

BAK08048
326527546
predicted protein
0.816199

Hordeum vulgare subsp. vulgare
3707
5002

[Hordeum vulgare subsp. vulgare]

EEE58613
54398660
hypothetical protein OsJ_09961
0.772586

Oryza sativa Japonica Group
3708

[Oryza sativa Japonica Group]

924-943
BAJ85289
326493655
predicted protein
1

Hordeum vulgare subsp. vulgare
3709
5003

[Hordeum vulgare subsp. vulgare]

NP_001130482
212275084
hypothetical protein LOC100191580
0.929688

Zea mays

3710
5004

[Zea mays]

&gt:gi|194689252|gb|ACF78710.1|

unknown [Zea mays]

&gt:gi|223972733|gb|ACN30554.1|

unknown [Zea mays]

NP_001056670
115466141
Os06g0128200 [Oryza sativa Japonica Group]
0.904297

Oryza sativa Japonica Group
3711
5005

&gt:gi|75115092|sp|Q658I5.1|LMBD1_ORYSJ

RecName: Full = LIMR family protein Os06g0128200

&gt:gi|52075611|dbj|BAD44782.1|

LMBR1 integral membrane family protein-like

[Oryza sativa Japonica Group]

&gt:gi|55296214|dbj|BAD67932.1|

LMBR1 integral membrane family protein-like

[Oryza sativa Japonica Group]

&gt:gi|113594710|dbj|BAF18584.1|

Os06g0128200 [Oryza sativa Japonica Group]

&gt:gi|215697147|dbj|BAG91141.1|

unnamed protein product

[Oryza sativa Japonica Group]

&gt:gi|218197487|gb|EEC79914.1|

hypothetical protein OsI_21464

[Oryza sativa Indica Group]

&gt:gi|222634886|gb|EEE65018.1|

hypothetical protein OsJ_19972

[Oryza sativa Japonica Group]

XP_002873012
297810256
LMBR1 integral membrane family protein
0.802734

Arabidopsis lyrata subsp. lyrata
3712
5006

[Arabidopsis lyrata subsp. lyrata]

&gt:gi|297318849|gb|EFH49271.1|

LMBR1 integral membrane family protein

[Arabidopsis lyrata subsp. lyrata]

XP_002528095
255574362
conserved hypothetical protein [Ricinus communis]
0.802734

Ricinus communis

3713
5007

&gt:gi|223532484|gb|EEF34274.1| conserved

hypothetical protein [Ricinus communis]

XP_002882590
297829415
hypothetical protein ARALYDRAFT_478196
0.806641

Arabidopsis lyrata subsp. lyrata
3714
5008

[Arabidopsis lyrata subsp. lyrata]

&gt:gi|297328430|gb|EFH58849.1|

hypothetical protein ARALYDRAFT_478196

[Arabidopsis lyrata subsp. lyrata]

NP_195766
30679270
LMBR1-like membrane protein
0.800781

Arabidopsis thaliana

3715
5009

[Arabidopsis thaliana]

&gt:gi|75181394|sp|Q9M028.1|LMBD2_ARATH

RecName: Full = LIMR family protein At5g01460

&gt:gi|7320724|emb|CAB81929.1|

putative protein [Arabidopsis thaliana]

&gt:gi|18176296|gb|AAL60018.1|

unknown protein [Arabidopsis thaliana]

&gt:gi|20465353|gb|AAM20080.1|

unknown protein [Arabidopsis thaliana]

&gt:gi|332002964|gb|AED90347.1|

LMBR1-like membrane protein

[Arabidopsis thaliana]

NP_566338
240255304
LMBR1-like membrane protein
0.804688

Arabidopsis thaliana

3716
5010

[Arabidopsis thaliana]

&gt:gi|226789815|sp|Q9SR93.2|LMBD1_ARATH

RecName: Full = LIMR family protein At3g08930

&gt:gi|14334836|gb|AAK59596.1|

unknown protein [Arabidopsis thaliana]

&gt:gi|24417362|gb|AAN60291.1|

unknown [Arabidopsis thaliana]

&gt:gi|56550703|gb|AAV97805.1|

At3g08930 [Arabidopsis thaliana]

&gt:gi|332641175|gb|AEE74696.1|

LMBR1-like membrane protein

[Arabidopsis thaliana]

XP_002280330
225440691
PREDICTED: hypothetical protein
0.796875

Vitis vinifera

3717
5011

[Vitis vinifera]

&gt:gi|297740207|emb|CBI30389.3|

unnamed protein product [Vitis vinifera]

XP_002323579
224140416
predicted protein [Populus trichocarpa]
0.796875

Populus trichocarpa

3718
5012

&gt:gi|222868209|gb|EEF05340.1|

predicted protein [Populus trichocarpa]

716-735
BAJ97749
326531489
predicted protein
1

Hordeum vulgare subsp. vulgare
3719
5013

[Hordeum vulgare subsp. vulgare]

714-733
XP_002456960
242055628
hypothetical protein SORBIDRAFT_03g046410
1

Sorghum bicolor

3720
5014

[Sorghum bicolor]

&gt:gi|241928935|gb|EES02080.1|

hypothetical protein SORBIDRAFT_03g046410

[Sorghum bicolor]

NP_001168278
293335408
hypothetical protein LOC100382042
0.87905

Zea mays

3721
5015

[Zea mays]

&gt:gi|223947167|gb|ACN27667.1|

unknown [Zea mays]

BAJ90008
326490681
predicted protein
0.721382

Hordeum vulgare subsp. vulgare
3722
5016

[Hordeum vulgare subsp. vulgare]

1011-1030
NP_001105211
162460524
fructokinase-2 [Zea mays]
1

Zea mays

3723
5017

&gt:gi|75293603|sp|Q6XZ78.1|SCRK2_MAIZE

RecName: Full = Fructokinase-2;

AltName: Full = ZmFRK2

&gt:gi|31652276|gb|AAP42806.1|

fructokinase 2 [Zea mays]

NP_001060837
115474480
Os08g0113100 [Oryza sativa Japonica Group]
0.907463

Oryza sativa Japonica Group
3724
5018

&gt:gi|122234591|sp|Q0J8G4.1|SCRK2_ORYSJ

RecName: Full = Fructokinase-2;

AltName: Full = Fructokinase II;

AltName: Full = OsFKII

&gt:gi|158513662|sp|A2YQL4.2|SCRK2_ORYSI

RecName: Full = Fructokinase-2;

AltName: Full = Fructokinase II;

AltName: Full = OsFKII

&gt:gi|16566704|gb|AAL26573.1|AF429947_1

putative fructokinase II [Oryza sativa]

&gt:gi|32352126|dbj|BAC78556.1|

fructokinase [Oryza sativa Japonica Group]

&gt:gi|42408363|dbj|BAD09515.1|

putative fructokinase

[Oryza sativa Japonica Group]

&gt:gi|113622806|dbj|BAF22751.1|

Os08g0113100 [Oryza sativa Japonica Group]

&gt:gi|125601970|gb|EAZ41295.1|

hypothetical protein OsJ_25803

[Oryza sativa Japonica Group]

&gt:gi|215687214|dbj|BAG91779.1|

unnamed protein product

[Oryza sativa Japonica Group]

&gt:gi|215708813|dbj|BAG94082.1|

unnamed protein product

[Oryza sativa Japonica Group]

600-619
NP_001158910
259490644
hypothetical protein LOC100303804
1

Zea mays

3725
5019

[Zea mays]

&gt:gi|194703158|gb|ACF85663.1|

unknown [Zea mays]

1224-1243
NP_001183123
308044352
hypothetical protein LOC100501490
1

Zea mays

3726
5020

[Zea mays]

&gt:gi|238009484|gb|ACR35777.1|

unknown [Zea mays]

XP_002436478
242091975
hypothetical protein SORBIDRAFT_10g003410
0.758519

Sorghum bicolor

3727
5021

[Sorghum bicolor]

&gt:gi|241914701|gb|EER87845.1|

hypothetical protein SORBIDRAFT_10g003410

[Sorghum bicolor]

1268-1287
XP_002443799
242078060
hypothetical protein SORBIDRAFT_07g002260
1

Sorghum bicolor

3728
5022

[Sorghum bicolor]

&gt:gi|241940149|gb|EES13294.1|

hypothetical protein SORBIDRAFT_07g002260

[Sorghum bicolor]

30-49
NP_001183250
308080805
hypothetical protein LOC100501641
1

Zea mays

3729
5023

[Zea mays]

&gt:gi|238010326|gb|ACR36198.1|

unknown [Zea mays]

760-779
NP_001143079
226492450
hypothetical protein LOC100275552
1

Zea mays

3730
5024

[Zea mays]

&gt:gi|195613956|gb|ACG28808.1|

hypothetical protein [Zea mays]

1545-1564
ACF84241
194700313
unknown [Zea mays]
1

Zea mays

3731
5025

&gt:gi|194707260|gb|ACF87714.1|

unknown [Zea mays]

NP_001147589
226507680
endo-1,4-beta-xylanase [Zea mays]
0.969543

Zea mays

3732
5026

&gt:gi|195612376|gb|ACG28018.1|

endo-1,4-beta-xylanase [Zea mays]

XP_002455242
242052192
hypothetical protein SORBIDRAFT_03g006980
0.873096

Sorghum bicolor

3733
5027

[Sorghum bicolor]

&gt:gi|241927217|gb|EES00362.1|

hypothetical protein SORBIDRAFT_03g006980

[Sorghum bicolor]

EAY72425
54362548
hypothetical protein OsI_00279
0.746193

Oryza sativa Indica Group
3734

[Oryza sativa Indica Group]

EEE53821
54398660
hypothetical protein OsJ_00270
0.71912

Oryza sativa Japonica Group
3735

[Oryza sativa Japonica Group]

273-292
NP_001132755
212721503
hypothetical protein LOC100194242
1

Zea mays

3736
5028

[Zea mays]

&gt:gi|194695312|gb|ACF81740.1|

unknown [Zea mays]

&gt:gi|223946859|gb|ACN27513.1|

unknown [Zea mays]

ACG31916
195620171
RHC1A [Zea mays]
0.895385

Zea mays

3737
5029

NP_001148878
226501599
LOC100282497 [Zea mays]
0.84

Zea mays

3738
5030

&gt:gi|195622884|gb|ACG33272.1|

RHC1A [Zea mays]

ACF82310
194696451
unknown [Zea mays]
0.843077

Zea mays

3739
5031

241-260
NP_001144625
226498917
hypothetical protein LOC100277643
1

Zea mays

3740
5032

[Zea mays]

&gt:gi|195644788|gb|ACG41862.1|

hypothetical protein [Zea mays]

160-179
XP_002440874
242090082
hypothetical protein SORBIDRAFT_09g011240
1

Sorghum bicolor

3741
5033

[Sorghum bicolor]

&gt:gi|241946159|gb|EES19304.1|

hypothetical protein SORBIDRAFT_09g011240

[Sorghum bicolor]

ACL54333
219887916
unknown [Zea mays]
0.935484

Zea mays

3742
5034

NP_001152417
226533398
ubiquinone biosynthesis protein ubiB
0.931276

Zea mays

3743
5035

[Zea mays]

&gt:gi|195656083|gb|ACG47509.1|

ubiquinone biosynthesis protein ubiB

[Zea mays]

BAK08115
326527680
predicted protein
0.851332

Hordeum vulgare subsp. vulgare
3744
5036

[Hordeum vulgare subsp. vulgare]

EEC78984
54362548
hypothetical protein OsI_19471
0.778401

Oryza sativa Indica Group
3745

[Oryza sativa Indica Group]

EEE63256
54398660
hypothetical protein OsJ_18066
0.776999

Oryza sativa Japonica Group
3746

[Oryza sativa Japonica Group]

XP_002301879
224065602
predicted protein [Populus trichocarpa]
0.709677

Populus trichocarpa

3747
5037

&gt:gi|222843605|gb|EEE81152.1|

predicted protein [Populus trichocarpa]

XP_002263052
225464715
PREDICTED: hypothetical protein
0.737728

Vitis vinifera

3748
5038

[Vitis vinifera]

150-169
XP_002453372
242064165
hypothetical protein SORBIDRAFT_04g004820
1

Sorghum bicolor

3749
5039

[Sorghum bicolor]

&gt:gi|241933203|gb|EES06348.1|

hypothetical protein SORBIDRAFT_04g004820

[Sorghum bicolor]

EEE56406
54398660
hypothetical protein OsJ_05563
0.867458

Oryza sativa Japonica Group
3750

[Oryza sativa Japonica Group]

Predicted
430-449
XP_002439337
242087008
hypothetical protein SORBIDRAFT_09g004620
1

Sorghum bicolor

3751
5040

zma

[Sorghum bicolor]

mir

&gt:gi|241944622|gb|EES17767.1|

50483

hypothetical protein SORBIDRAFT_09g004620

[Sorghum bicolor]

ACG35753
195627845
macrophage erythroblast attacher
0.950617

Zea mays

3752
5041

[Zea mays]

&gt:gi|223949645|gb|ACN28906.1|

unknown [Zea mays]

NP_001054719
115462238
Os05g0160100 [Oryza sativa Japonica Group]
0.814815

Oryza sativa Japonica Group
3753
5042

&gt:gi|51038108|gb|AAT93911.1| unknown

protein [Oryza sativa Japonica Group]

&gt:gi|55168055|gb|AAV43923.1| unknown

protein [Oryza sativa Japonica Group]

&gt:gi|113578270|dbj|BAF16633.1|

Os05g0160100 [Oryza sativa Japonica Group]

&gt:gi|125550933|gb|EAY96642.1|

hypothetical protein OsI_18556

[Oryza sativa Indica Group]

&gt:gi|215707056|dbj|BAG93516.1|

unnamed protein product

[Oryza sativa Japonica Group]

&gt:gi|222630285|gb|EEE62417.1|

hypothetical protein OsJ_17208

[Oryza sativa Japonica Group]

BAK01850
326489738
predicted protein
0.859259

Hordeum vulgare subsp. vulgare
3754
5043

[Hordeum vulgare subsp. vulgare]

898-917
ACF80701
194693233
unknown [Zea mays]
1

Zea mays

3755
5044

NP_001141965
226493338
hypothetical protein LOC100274114
1

Zea mays

3756
5045

[Zea mays]

&gt:gi|194706606|gb|ACF87387.1|

unknown [Zea mays]

150-169
XP_002467057
242039324
hypothetical protein SORBIDRAFT_01g018900
1

Sorghum bicolor

3757
5046

[Sorghum bicolor]

&gt:gi|241920911|gb|EER94055.1|

hypothetical protein SORBIDRAFT_01g018900

[Sorghum bicolor]

ACL52685
219884620
unknown [Zea mays]
0.922222

Zea mays

3758
5047

NP_001150075
226501115
lysM domain containing protein
0.919444

Zea mays

3759
5048

[Zea mays]

&gt:gi|195636494|gb|ACG37715.1|

lysM domain containing protein

[Zea mays]

NP_001152252
226496336
lysM domain containing protein
0.947222

Zea mays

3760
5049

[Zea mays]

&gt:gi|195654297|gb|ACG46616.1|

lysM domain containing protein

[Zea mays]

NP_001064897
115482607
Os10g0485500 [Oryza sativa Japonica Group]
0.772222

Oryza sativa Japonica Group
3761
5050

&gt:gi|18087889|gb|AAL59043.1|AC087182_26

unknown protein [Oryza sativa Japonica Group]

&gt:gi|31432752|gb|AAP54345.1|

LysM domain containing protein,

expressed [Oryza sativa Japonica Group]

&gt:gi|113639506|dbj|BAF26811.1|

Os10g0485500 [Oryza sativa Japonica Group]

&gt:gi|125532413|gb|EAY78978.1|

hypothetical protein OsI_34084

[Oryza sativa Indica Group]

691-710
XP_002455492
242052692
hypothetical protein SORBIDRAFT_03g011880
1

Sorghum bicolor

3762
5051

[Sorghum bicolor]

&gt:gi|229609765|gb|ACQ83498.1|

CBL-interacting protein kinase 21

[Sorghum bicolor]

&gt:gi|241927467|gb|EES00612.1|

hypothetical protein SORBIDRAFT_03g011880

[Sorghum bicolor]

NP_001105967
162461846
putative protein kinase [Zea mays]
0.933045

Zea mays

3763
5052

&gt:gi|120400397|gb|ABM21449.1|

putative protein kinase [Zea mays]

ACG35130
195626599
CBL-interacting serine/threonine-protein
0.922246

Zea mays

3764
5053

kinase 1 [Zea mays]

NP_001042792
115436067
Os01g0292200 [Oryza sativa Japonica Group]
0.866091

Oryza sativa Japonica Group
3765
5054

&gt:gi|75334984|sp|Q9LGV5.1|CIPK1_ORYSJ

RecName: Full = CBL-interacting protein kinase 1;

AltName: Full = OsCIPK01

&gt:gi|8468028|dbj|BAA96628.1|

putative CBL-interacting protein kinase 1

[Oryza sativa Japonica Group]

&gt:gi|113532323|dbj|BAF04706.1|

Os01g0292200 [Oryza sativa Japonica Group]

&gt:gi|189099603|gb|ACD76973.1|

CBL-interactingprotein kinase 1

[Oryza sativa Japonica Group]

&gt:gi|215686723|dbj|BAG89573.1|

unnamed protein product

[Oryza sativa Japonica Group]

&gt:gi|222618247|gb|EEE54379.1|

hypothetical protein OsJ_01395

[Oryza sativa Japonica Group]

NP_001054578
115461956
Os08g0136200 [Oryza sativa Japonica Group]
0.74514

Oryza sativa Japonica Group
3766
5055

&gt:gi|75326492|sp|Q75L42.1|CIPKH_ORYSJ

RecName: Full = CBL-interacting protein kinase 17;

AltName: Full = OsCIPK17

&gt:gi|46485791|gb|AAS98416.1| unknown

protein [Oryza sativa Japonica Group]

&gt:gi|51038254|gb|AAT94057.1| unknown

protein [Oryza sativa Japonica Group]

&gt:gi|113578129|dbj|BAF16492.1|

Os05g0136200 [Oryza sativa Japonica Group]

&gt:gi|189099617|gb|ACD76980.1|

CBL-interacting protein kinase 17

[Oryza sativa Japonica Group]

&gt:gi|222630113|gb|EEE62245.1|

hypothetical protein OsJ_17032

[Oryza sativa Japonica Group]

EEC78476
54362548
hypothetical protein OsI_18365
0.74514

Oryza sativa Indica Group
3767

[Oryza sativa Indica Group]

BAJ96678
326519357
predicted protein
0.714903

Hordeum vulgare subsp. vulgare
3768
5056

[Hordeum vulgare subsp. vulgare]

361-380
NP_001142046
226531335
hypothetical protein LOC100274202
1

Zea mays

3769
5057

[Zea mays]

&gt:gi|194706888|gb|ACF87528.1|

unknown [Zea mays]

ACG42550
195646163
F-box domain containing protein
0.755501

Zea mays

3770
5058

[Zea mays]

XP_002441523
242091380
hypothetical protein SORBIDRAFT_09g028610
0.765281

Sorghum bicolor

3771
5059

[Sorghum bicolor]

&gt:gi|241946808|gb|EES19953.1|

hypothetical protein SORBIDRAFT_09g028610

[Sorghum bicolor]

123-142
XP_002451328
242072102
hypothetical protein SORBIDRAFT_05g027870
1

Sorghum bicolor

3772
5060

[Sorghum bicolor]

&gt:gi|241937171|gb|EES10316.1|

hypothetical protein SORBIDRAFT_05g027870

[Sorghum bicolor]

NP_001104921
162458160
ribulose bisphosphate carboxylase/oxygenase activase,
0.915909

Zea mays

3773
5061

chloroplastic precursor [Zea mays]

&gt:gi|29429152|sp|Q9ZT00.3|RCA_MAIZE

RecName: Full = Ribulose bisphosphate

carboxylase/oxygenase activase, chloroplastic;

Short = RA; Short = RuBisCO activase;

Flags: Precursor

&gt:gi|19855034|gb|AAC97932.3|

ribulose-1,5-bisphosphate carboxylase/oxygenase

activase precursor [Zea mays]

&gt:gi|195620038|gb|ACG31849.1|

ribulose bisphosphate carboxylase/oxygenase

activase [Zea mays]

&gt:gi|313574198|dbj|BAJ41042.1|

ribulose-1,5-bisphosphate carboxylase/oxygenase

activase small isoform

[Zea mays]

ACN28387
223948606
unknown [Zea mays]
0.820455

Zea mays

3774
5062

BAA97584
8918360
RuBisCO activase small isoform precursor
0.834091

Oryza sativa

3775
5063

[Oryza sativa]

&gt:gi|62733169|gb|AAX95286.1|

RuBisCO activase small isoform precursor

[Oryza sativa Japonica Group]

&gt:gi|77552726|gb|ABA95523.1|

Ribulose bisphosphate carboxylase/oxygenase

activase, chloroplast precursor, putative, expressed

[Oryza sativa Japonica Group]

&gt:gi|215694316|dbj|BAG89309.1|

unnamed protein product

[Oryza sativa Japonica Group]

ABG22614
108863896
Ribulose bisphosphate carboxylase/oxygenase
0.834091

Oryza sativa Japonica Group
3776

activase, chloroplast precursor, putative, expressed

[Oryza sativa Japonica Group]

P93431

RecName: Full = Ribulose bisphosphate
0.834091

Oryza sativa (Japonica cultivar-group)
3777

carboxylase/oxygenase activase, chloroplastic;

Short = RA; Short = RuBisCO activase;

Flags: Precursor

&gt:gi|8918359|dbj|BAA97583.1|

RuBisCO activase large isoform precursor

[Oryza sativa (Japonica cultivar-group)]

&gt:gi|32352158|dbj|BAC78572.1|

ribulose-bisphosphate carboxylase activase large

isoform precursor protein

[Oryza sativa Japonica Group]

&gt:gi|77552725|gb|ABA95522.1|

Ribulose bisphosphate carboxylase/oxygenase

activase, chloroplast precursor, putative, expressed

[Oryza sativa Japonica Group]

&gt:gi|125578108|gb|EAZ19330.1|

hypothetical protein OsJ_34880

[Oryza sativa Japonica Group]

&gt:gi|218186228|gb|EEC68655.1|

hypothetical protein OsI_37096

[Oryza sativa Indica Group]

AAC28134
3377792
ribulose-1,5-bisphosphate carboxylase/oxygenase
0.834091

Oryza sativa Japonica Group
3778
5064

activase [Oryza sativa Japonica Group]

AAF71272
7960276
ribulose bisphosphate carboxylase activase
0.818182

Triticum aestivum

3779
5065

B [Triticum aestivum]

AAP83928
32481062
Rubisco activase beta form precursor
0.815909

Deschampsia antarctica

3780
5066

[Deschampsia antarctica]

AAH29790
20987526
Unknown (protein for MGC: 35458)
0.809091

Homo sapiens

3781
5067

[Homo sapiens]

1071-1090
XP_002441513
242091360
hypothetical protein SORBIDRAFT_09g028410
1

Sorghum bicolor

3782
5068

[Sorghum bicolor]

&gt:gi|241946798|gb|EES19943.1|

hypothetical protein SORBIDRAFT_09g028410

[Sorghum bicolor]

ACF85297
194702425
unknown [Zea mays]
0.977901

Zea mays

3783
5069

NP_001149016
226510213
dnaJ subfamily B member 5 [Zea mays]
0.972376

Zea mays

3784
5070

&gt:gi|195624008|gb|ACG33834.1|

dnaJ subfamily B member 5 [Zea mays]

NP_001168528
293332110
hypothetical protein LOC100382308
0.881215

Zea mays

3785
5071

[Zea mays]

&gt:gi|223948919|gb|ACN28543.1|

unknown [Zea mays]

NP_001056320
115465440
Os05g0562300 [Oryza sativa Japonica Group]
0.90884

Oryza sativa Japonica Group
3786
5072

&gt:gi|51854270|gb|AAU10651.1|

&apos:putative; heat shock protein, hsp40&apos:

[Oryza sativa Japonica Group]

&gt:gi|113579871|dbj|BAF18234.1|

Os05g0562300 [Oryza sativa Japonica Group]

&gt:gi|215695218|dbj|BAG90409.1|

unnamed protein product

[Oryza sativa Japonica Group]

&gt:gi|222632556|gb|EEE64688.1|

hypothetical protein OsJ_19543

[Oryza sativa Japonica Group]

EAY99019
54362548
hypothetical protein OsI_20977
0.906077

Oryza sativa Indica Group
3787

[Oryza sativa Indica Group]

XP_002278979
225443601
PREDICTED: hypothetical protein
0.767956

Vitis vinifera

3788
5073

[Vitis vinifera]

ACU18092
255635479
unknown [Glycine max]
0.773481

Glycine max

3789
5074

XP_002886287
297836809
DNAJ heat shock family protein
0.745856

Arabidopsis lyrata subsp. lyrata
3790
5075

[Arabidopsis lyrata subsp. lyrata]

&gt:gi|297332127|gb|EFH62546.1|

DNAJ heat shock family protein

[Arabidopsis lyrata subsp. lyrata]

XP_002509430
255536726
Protein SIS1, putative [Ricinus communis]
0.756906

Ricinus communis

3791
5076

&gt:gi|223549329|gb|EEF50817.1|

Protein SIS1, putative [Ricinus communis]

174-193
XP_002457615
242056938
hypothetical protein SORBIDRAFT_03g010370
1

Sorghum bicolor

3792
5077

[Sorghum bicolor]

&gt:gi|241929590|gb|EES02735.1|

hypothetical protein SORBIDRAFT_03g010370

[Sorghum bicolor]

ACG48423
195657910
hypothetical protein [Zea mays]
0.943478

Zea mays

3793
5078

NP_001145494
226503300
hypothetical protein LOC100278893
0.943478

Zea mays

3794
5079

[Zea mays]

&gt:gi|195657081|gb|ACG48008.1|

hypothetical protein [Zea mays]

EAZ11347
54398660
hypothetical protein OsJ_01214
0.743478

Oryza sativa Japonica Group
3795

[Oryza sativa Japonica Group]

NP_001042671
115435825
Os01g0265700 [Oryza sativa Japonica Group]
0.752174

Oryza sativa Japonica Group
3796
5080

&gt:gi|56783773|dbj|BAD81185.1| unknown

protein [Oryza sativa Japonica Group]

&gt:gi|113532202|dbj|BAF04585.1|

Os01g0265700 [Oryza sativa Japonica Group]

&gt:gi|125525302|gb|EAY73416.1|

hypothetical protein OsI_01298

[Oryza sativa Indica Group]

&gt:gi|215766960|dbj|BAG99188.1|

unnamed protein product

[Oryza sativa Japonica Group]

BAK07146
326515799
predicted protein
0.713043

Hordeum vulgare subsp. vulgare
3797
5081

[Hordeum vulgare subsp. vulgare]

912-931
NP_001151603
226509921
VAMP protein SEC22 [Zea mays]
1

Zea mays

3798
5082

&gt:gi|195648052|gb|ACG43494.1|

VAMP protein SEC22 [Zea mays]

NP_001150617
226492448
VAMP protein SEC22 [Zea mays]
0.890688

Zea mays

3799
5083

&gt:gi|195640598|gb|ACG39767.1|

VAMP protein SEC22 [Zea mays]

ACN30757
223973138
unknown [Zea mays]
0.874494

Zea mays

3800
5084

BAK04669
326529444
predicted protein
0.700405

Hordeum vulgare subsp. vulgare
3801
5085

[Hordeum vulgare subsp. vulgare]

NP_001052766
115458331
Os04g0416700 [Oryza sativa Japonica Group]
0.704453

Oryza sativa Japonica Group
3802
5086

&gt:gi|38344036|emb|CAE01528.2|

OJ991214_12.17 [Oryza sativa Japonica Group]

&gt:gi|39545714|emb|CAD40930.3|

OSJNBa0033G16.4 [Oryza sativa Japonica Group]

&gt:gi|113564337|dbj|BAF14680.1|

Os04g0416700 [Oryza sativa Japonica Group]

&gt:gi|116310806|emb|CAH67596.1|

OSIGBa0092M08.8 [Oryza sativa Indica Group]

&gt:gi|125548247|gb|EAY94069.1|

hypothetical protein OsI_15845

[Oryza sativa Indica Group]

&gt:gi|125590354|gb|EAZ30704.1|

hypothetical protein OsJ_14762

[Oryza sativa Japonica Group]

&gt:gi|215686964|dbj|BAG90834.1|

unnamed protein product

[Oryza sativa Japonica Group]

387-406
XP_002444876
242080214
hypothetical protein SORBIDRAFT_07g000760
1

Sorghum bicolor

3803
5087

[Sorghum bicolor]

&gt:gi|241941226|gb|EES14371.1|

hypothetical protein SORBIDRAFT_07g000760

[Sorghum bicolor]

NP_001148818
226531679
shwachman-Bodian-Diamond syndrome protein
0.95493

Zea mays

3804
5088

[Zea mays]

&gt:gi|194708114|gb|ACF88141.1|

unknown [Zea mays]

&gt:gi|195622368|gb|ACG33014.1|

shwachman-Bodian-Diamond syndrome protein

[Zea mays]

NP_001060798
115474402
Os08g0107500 [Oryza sativa Japonica Group]
0.850704

Oryza sativa Japonica Group
3805
5089

&gt:gi|42408234|dbj|BAD09391.1|

putative Shwachman-Bodian-Diamond syndrome protein

[Oryza sativa Japonica Group]

&gt:gi|113622767|dbj|BAF22712.1|

Os08g0107500 [Oryza sativa Japonica Group]

&gt:gi|215693786|dbj|BAG88985.1|

unnamed protein product [Oryza sativa Japonica Group]

&gt:gi|218200357|gb|EEC82784.1|

hypothetical protein OsI_27530

[Oryza sativa Indica Group]

&gt:gi|222639780|gb|EEE67912.1|

hypothetical protein OsJ_25763

[Oryza sativa Japonica Group]

BAJ88850
326525606
predicted protein
0.785915

Hordeum vulgare subsp. vulgare
3806
5090

[Hordeum vulgare subsp. vulgare]

&gt:gi|326529251|dbj|BAK01019.1|

predicted protein

[Hordeum vulgare subsp. vulgare]

231-250
NP_001142230
226530616
hypothetical protein LOC100274398
1

Zea mays

3807
5091

[Zea mays]

&gt:gi|194707712|gb|ACF87940.1|

unknown [Zea mays]

&gt:gi|323388581|gb|ADX60095.1|

AP2-EREBP transcription factor

[Zea mays]

NP_001149871
226497003
ethylene responsive protein [Zea mays]
0.966667

Zea mays

3808
5092

&gt:gi|195635171|gb|ACG37054.1|

ethylene responsive protein [Zea mays]

XP_002448280
242076687
hypothetical protein SORBIDRAFT_06g024355
0.818519

Sorghum bicolor

3809
5093

[Sorghum bicolor]

&gt:gi|241939463|gb|EES12608.1|

hypothetical protein SORBIDRAFT_06g024355

[Sorghum bicolor]

NP_001152050
226498033
ethylene-responsive transcription factor 2
0.87037

Zea mays

3810
5094

[Zea mays]

&gt:gi|195652151|gb|ACG45543.1|

ethylene-responsive transcription factor 2

[Zea mays]

ABQ52686
148009083
ethylene-responsive factor
0.77037

Thinopyrum intermedium

3811
5095

[Thinopyrum intermedium]

ABQ52687
148009101
pathogen-inducible transcription factor
0.766667

Triticum aestivum

3812
5096

ERF3 [Triticum aestivum]

NP_001053474
297603127
Os04g0546800 [Oryza sativa Japonica Group]
0.740741

Oryza sativa Japonica Group
3813
5097

&gt:gi|70663974|emb|CAD41472.3|

OSJNBa0079A21.16 [Oryza sativa Japonica Group]

&gt:gi|113565045|dbj|BAF15388.1|

Os04g0546800 [Oryza sativa Japonica Group]

&gt:gi|117501525|gb|ABK34954.1|

development related ERF protein

[Oryza sativa Japonica Group]

&gt:gi|215769250|dbj|BAH01479.1|

unnamed protein product

[Oryza sativa Japonica Group]

CAH67263
116310240
OSIGBa0101C23.15 [Oryza sativa Indica Group]
0.740741

Oryza sativa Indica Group
3814
5098

EAY95058
54362548
hypothetical protein OsI_16873
0.740741

Oryza sativa Indica Group
3815

[Oryza sativa Indica Group]

BAK05766
326491332
predicted protein
0.737037

Hordeum vulgare subsp. vulgare
3816
5099

[Hordeum vulgare subsp. vulgare]

345-364
XP_002440768
242089870
hypothetical protein SORBIDRAFT_09g006240
1

Sorghum bicolor

3817
5100

[Sorghum bicolor]

&gt:gi|241946053|gb|EES19198.1|

hypothetical protein SORBIDRAFT_09g006240

[Sorghum bicolor]

NP_001150209
226531775
prenylated rab acceptor family protein
0.918367

Zea mays

3818
5101

[Zea mays]

&gt:gi|195637576|gb|ACG38256.1|

prenylated rab acceptor family protein

[Zea mays]

BAJ94157
326490166
predicted protein
0.714286

Hordeum vulgare subsp. vulgare
3819
5102

[Hordeum vulgare subsp. vulgare]

AAT44309
37719165
hypothetical protein
0.739796

Oryza sativa Japonica Group
3820
5103

[Oryza sativa Japonica Group]

1398-1417
XP_002441339
242091012
hypothetical protein SORBIDRAFT_09g024710
1

Sorghum bicolor

3821
5104

[Sorghum bicolor]

&gt:gi|241946624|gb|EES19769.1|

hypothetical protein SORBIDRAFT_09g024710

[Sorghum bicolor]

NP_001055967
115464734
Os05g0500900 [Oryza sativa Japonica Group]
0.79289

Oryza sativa Japonica Group
3822
5105

&gt:gi|75113903|sp|Q60EJ6.1|GH34_ORYSJ

RecName: Full = Probable indole-3-acetic

acid-amido synthetase GH3.4;

AltName: Full = Auxin-responsive GH3-like protein 4;

Short = OsGH3-4

&gt:gi|53749366|gb|AAU90225.1|

putative auxin-responsive protein GH3

[Oryza sativa Japonica Group]

&gt:gi|113579518|dbj|BAF17881.1|

Os05g0500900 [Oryza sativa Japonica Group]

&gt:gi|125552879|gb|EAY98588.1|

hypothetical protein OsI_20501

[Oryza sativa Indica Group]

&gt:gi|222632129|gb|EEE64261.1|

hypothetical protein OsJ_19094

[Oryza sativa Japonica Group]

XP_002456458
242054624
hypothetical protein SORBIDRAFT_03g036680
0.772798

Sorghum bicolor

3823
5106

[Sorghum bicolor]

&gt:gi|241928433|gb|EES01578.1|

hypothetical protein SORBIDRAFT_03g036680

[Sorghum bicolor]

NP_001044467
115440374
Os01g0785400 [Oryza sativa Japonica Group]
0.769706

Oryza sativa Japonica Group
3824
5107

&gt:gi|75272534|sp|Q8LQM5.1|GH31_ORYSJ

RecName: Full = Probable indole-3-acetic

acid-amido synthetase GH3.1;

AltName: Full = Auxin-responsive GH3-like protein 1;

Short = OsGH3-1

&gt:gi|20804910|dbj|BAB92590.1|

putative auxin-regulated protein GH3

[Oryza sativa Japonica Group]

&gt:gi|113533998|dbj|BAF06381.1|

Os01g0785400 [Oryza sativa Japonica Group]

&gt:gi|125572267|gb|EAZ13782.1|

hypothetical protein OsJ_03707

[Oryza sativa Japonica Group]

&gt:gi|215693284|dbj|BAG88666.1|

unnamed protein product

[Oryza sativa Japonica Group]

ACL52529
219884308
unknown [Zea mays]
0.734158

Zea mays

3825
5108

489-508
NP_001130602
212274530
hypothetical protein LOC100191701
1

Zea mays

3826
5109

[Zea mays]

&gt:gi|194689604|gb|ACF78886.1|

unknown [Zea mays]

&gt:gi|219886741|gb|ACL53745.1|

unknown [Zea mays]

XP_002457581
242056870
hypothetical protein SORBIDRAFT_03g009790
0.868908

Sorghum bicolor

3827
5110

[Sorghum bicolor]

&gt:gi|241929556|gb|EES02701.1|

hypothetical protein SORBIDRAFT_03g009790

[Sorghum bicolor]

BAK07768
326522611
predicted protein
0.741176

Hordeum vulgare subsp. vulgare
3828
5111

[Hordeum vulgare subsp. vulgare]

BAA84618
5922603
putative pectinesterase
0.712605

Oryza sativa Japonica Group
3829
5112

[Oryza sativa Japonica Group]

&gt:gi|6016850|dbj|BAA85193.1|

putative pectinesterase

[Oryza sativa Japonica Group]

654-673
XP_002458737
242059182
hypothetical protein SORBIDRAFT_03g039330
1

Sorghum bicolor

3830
5113

[Sorghum bicolor]

&gt:gi|241930712|gb|EES03857.1|

hypothetical protein SORBIDRAFT_03g039330

[Sorghum bicolor]

NP_001147098
226508543
osmotin-like protein [Zea mays]
0.964143

Zea mays

3831
5114

&gt:gi|226958466|ref|NP_001152945.1|

LOC100284104 [Zea mays]

&gt:gi|195607196|gb|ACG25428.1|

osmotin-like protein precursor [Zea mays]

&gt:gi|195639504|gb|ACG39220.1|

osmotin-like protein precursor [Zea mays]

ADI43217
297498988
osmotin-like protein
0888446

Oryza sativa Indica Group
3832
5115

[Oryza sativa Indica Group]

NP_001044756
115440952
Os01g0839900 [Oryza sativa Japonica Group]
0.87251

Oryza sativa Japonica Group
3833
5116

&gt:gi|15623832|dbj|BAB67891.1|

putative thaumatin-like cytokinin-binding

protein [Oryza sativa Japonica Group]

&gt:gi|21104619|dbj|BAB93211.1|

putative thaumatin-like cytokinin-binding protein

[Oryza sativa Japonica Group]

&gt:gi|113534287|dbj|BAF06670.1|

Os01g0839900 [Oryza sativa Japonica Group]

&gt:gi|125528326|gb|EAY76440.1|

hypothetical protein OsI_04374

[Oryza sativa Indica Group]

&gt:gi|125572584|gb|EAZ14099.1|

hypothetical protein OsJ_04023

[Oryza sativa Japonica Group]

&gt:gi|215765831|dbj|BAG87528.1|

unnamed protein product

[Oryza sativa Japonica Group]

ADI43216
297498986
osmotin-like protein
0.868526

Oryza sativa Indica Group
3834
5117

[Oryza sativa Indica Group]

BAK00635
326524503
predicted protein
0.808765

Hordeum vulgare subsp. vulgare
3835
5118

[Hordeum vulgare subsp. vulgare]

430-449
ACN26514
223944860
unknown [Zea mays]
1

Zea mays

3836
5119

NP_001151242
226533364
triacylglycerol lipase [Zea mays]
0.997512

Zea mays

3837
5120

&gt:gi|195645276|gb|ACG42106.1|

triacylglycerol lipase [Zea mays]

XP_002441554
242091442
hypothetical protein SORBIDRAFT_09g029230
0.81592

Sorghum bicolor

3838
5121

[Sorghum bicolor]

&gt:gi|241946839|gb|EES19984.1|

hypothetical protein SORBIDRAFT_09g029230

[Sorghum bicolor]

NP_001132361
212722431
hypothetical protein LOC100193806 [Zea mays]
0.716418

Zea mays

3839
5122

&gt:gi|194694184|gb|ACF81176.1|

unknown [Zea mays]

XP_002440467
242089268
hypothetical protein SORBIDRAFT_09g001420
0.706468

Sorghum bicolor

3840
5123

[Sorghum bicolor]

&gt:gi|241945752|gb|EES18897.1|

hypothetical protein SORBIDRAFT_09g001420

[Sorghum bicolor]

NP_001056387
115465574
Os05g0574100 [Oryza sativa Japonica Group]
0.803483

Oryza sativa Japonica Group
3841
5124

&gt:gi|75122568|sp|Q6F357.1|PLA7_ORYSJ

RecName: Full = Phospholipase A1-II 7

&gt:gi|334350808|sp|A2Y7R2.1|PLA7_ORYSI

RecName: Full = Phospholipase A1-II 7

&gt:gi|50080246|gb|AAT69581.1|

putative lipase

[Oryza sativa Japonica Group]

&gt:gi|52353545|gb|AAU44111.1|

putative lipase

[Oryza sativa Japonica Group]

&gt:gi|113579938|dbj|BAF18301.1|

Os05g0574100 [Oryza sativa Japonica Group]

&gt:gi|125553413|gb|EAY99122.1|

hypothetical protein OsI_21081

[Oryza sativa Indica Group]

XP_002465238
242035686
hypothetical protein SORBIDRAFT_01g034810
0.708955

Sorghum bicolor

3842
5125

[Sorghum bicolor]

&gt:gi|241919092|gb|EER92236.1|

hypothetical protein SORBIDRAFT_01g034810

[Sorghum bicolor]

381-400
NP_001152292
226492961
LOC100285931 [Zea mays]
1

Zea mays

3843
5126

&gt:gi|195654767|gb|ACG46851.1|

poly [Zea mays]

&gt:gi|238006566|gb|ACR34318.1|

unknown [Zea mays]

XP_002465362
242035934
hypothetical protein SORBIDRAFT_01g037200
0.891589

Sorghum bicolor

3844
5127

[Sorghum bicolor]

&gt:gi|241919216|gb|EER92360.1|

hypothetical protein SORBIDRAFT_01g037200

[Sorghum bicolor]

419-438
XP_002455452
242052612
hypothetical protein SORBIDRAFT_03g011010
1

Sorghum bicolor

3845
5128

[Sorghum bicolor]

&gt:gi|63087720|emb|CAI93175.1|

glycosyltransferase [Sorghum bicolor]

&gt:gi|241927427|gb|EES00572.1|

hypothetical protein SORBIDRAFT_03g011010

[Sorghum bicolor]

439-458
NP_001141101
226505471
hypothetical protein LOC100273184
1

Zea mays

3846
5129

[Zea mays]

&gt:gi|194702624|gb|ACF85396.1|

unknown [Zea mays]

XP_002456304
242054316
hypothetical protein SORBIDRAFT_03g033760
0.883772

Sorghum bicolor

3847
5130

[Sorghum bicolor]

&gt:gi|241928279|gb|EES01424.1|

hypothetical protein SORBIDRAFT_03g033760

[Sorghum bicolor]

NP_001044161
115439762
Os01g0733500 [Oryza sativa Japonica Group]
0.747807

Oryza sativa Japonica Group
3848
5131

&gt:gi|75164073|sp|Q942D4.1|BURP3_ORYSJ

RecName: Full = BURP domain-containing protein 3;

Short = OsBURP03; Flags: Precursor

&gt:gi|15624018|dbj|BAB68072.1|

putative BURP domain-containing protein

[Oryza sativa Japonica Group]

&gt:gi|20161002|dbj|BAB89935.1|

putative BURP domain-containing protein

[Oryza sativa Japonica Group]

&gt:gi|113533692|dbj|BAF06075.1|

Os01g0733500 [Oryza sativa Japonica Group]

&gt:gi|215694492|dbj|BAG89485.1|

unnamed protein product

[Oryza sativa Japonica Group]

&gt:gi|215741032|dbj|BAG97527.1|

unnamed protein product

[Oryza sativa Japonica Group]

EAZ13440
54398660
hypothetical protein OsJ_03360
0.745614

Oryza sativa Japonica Group
3849

[Oryza sativa Japonica Group]

EAY75726
54362548
hypothetical protein OsI_03637
0.741228

Oryza sativa Indica Group
3850

[Oryza sativa Indica Group]

BAK06506
326502027
predicted protein
0.962719

Hordeum vulgare subsp. vulgare
3851
5132

[Hordeum vulgare subsp. vulgare]

328-347
ACN36219
224034286
unknown [Zea mays]
1

Zea mays

3852
5133

NP_001150471
226532659
LOC100284101 [Zea mays]
0.780684

Zea mays

3853
5134

&gt:gi|195639480|gb|ACG39208.1|

RNA-binding protein-like [Zea mays]

486-505
XP_002464945
242035100
hypothetical protein SORBIDRAFT_01g029270
1

Sorghum bicolor

3854
5135

[Sorghum bicolor]

&gt:gi|241918799|gb|EER91943.1|

hypothetical protein SORBIDRAFT_01g029270

[Sorghum bicolor]

NP_001105643
162458363
beta-expansin 7 [Zea mays]
0.924812

Zea mays

3855
5136

&gt:gi|14193773|gb|AAK56130.1|AF332180_1

beta-expansin 7 [Zea mays]

XP_002464944
242035098
hypothetical protein SORBIDRAFT_01g029260
0.909774

Sorghum bicolor

3856
5137

[Sorghum bicolor]

&gt:gi|241918798|gb|EER91942.1|

hypothetical protein SORBIDRAFT_01g029260

[Sorghum bicolor]

NP_001148695
226494268
beta-expansin 1a [Zea mays]
0.887218

Zea mays

3857
5138

&gt:gi|195621464|gb|ACG32562.1|

beta-expansin 1a precursor [Zea mays]

&gt:gi|238010538|gb|ACR36304.1|

unknown [Zea mays]

XP_002464943
242035096
hypothetical protein SORBIDRAFT_01g029250
0.883459

Sorghum bicolor

3858
5139

[Sorghum bicolor]

&gt:gi|241918797|gb|EER91941.1|

hypothetical protein SORBIDRAFT_01g029250

[Sorghum bicolor]

XP_002464946
242035102
hypothetical protein SORBIDRAFT_01g029273
0.868421

Sorghum bicolor

3859
5140

[Sorghum bicolor]

&gt:gi|241918800|gb|EER91944.1|

hypothetical protein SORBIDRAFT_01g029273

[Sorghum bicolor]

NP_001065351
115483361
Os10g0555900 [Oryza sativa Japonica Group]
0.834586

Oryza sativa Japonica Group
3860
5141

&gt:gi|115502197|sp|Q336T5.2|EXPB3_ORYSJ

RecName: Full = Expansin-B3;

AltName: Full = Beta-expansin-3;

AltName: Full = OsEXPB3;

AltName: Full = OsaEXPb1.10;

Flags: Precursor

&gt:gi|8118423|gb|AAF72984.1|AF261271_2

beta-expansin [Oryza sativa]

&gt:gi|13194235|gb|AAK15453.1|AC037426_15

beta-expansin EXPB3

[Oryza sativa Japonica Group]

&gt:gi|14165333|gb|AAK55465.1|AC069300_20

beta-expansin (EXPB3)

[Oryza sativa Japonica Group]

&gt:gi|110289548|gb|ABB47975.2|

Beta-expansin 1a precursor, putative,

expressed [Oryza sativa Japonica Group]

&gt:gi|113639883|dbj|BAF27188.1|

Os10g0555900 [Oryza sativa Japonica Group]

&gt:gi|125532914|gb|EAY79479.1|

hypothetical protein OsI_34607

[Oryza sativa Indica Group]

&gt:gi|169244487|gb|ACA50517.1|

beta-expansin [Oryza sativa Japonica Group]

&gt:gi|215704824|dbj|BAG94852.1|

unnamed protein product

[Oryza sativa Japonica Group]

XP_002452339
242062099
hypothetical protein SORBIDRAFT_04g023980
0.808271

Sorghum bicolor

3861
5142

[Sorghum bicolor]

&gt:gi|241932170|gb|EES05315.1|

hypothetical protein SORBIDRAFT_04g023980

[Sorghum bicolor]

AAS48881
44894799
expansin EXPB3 [Triticum aestivum]
0.819549

Triticum aestivum

3862
5143

AAT99293
51242710
beta-expansin TaEXPB2
0.819549

Triticum aestivum

3863
5144

[Triticum aestivum]

285-304
ACF81426
194694683
unknown [Zea mays]
1

Zea mays

3864
5145

&gt:gi|223946585|gb|ACN27376.1|

unknown [Zea mays]

71-90
XP_002445056
242080574
hypothetical protein SORBIDRAFT_07g003430
1

Sorghum bicolor

3865
5146

[Sorghum bicolor]

&gt:gi|241941406|gb|EES14551.1|

hypothetical protein SORBIDRAFT_07g003430

[Sorghum bicolor]

NP_001132060
212721279
hypothetical protein LOC100193472
0.813309

Zea mays

3866
5147

[Zea mays]

&gt:gi|194693322|gb|ACF80745.1|

unknown [Zea mays]

579-598
XP_002439103
242086540
hypothetical protein SORBIDRAFT_09g000540
1

Sorghum bicolor

3867
5148

[Sorghum bicolor]

&gt:gi|241944388|gb|EES17533.1|

hypothetical protein SORBIDRAFT_09g000540

[Sorghum bicolor]

NP_001151078
226529502
ras-related protein Rab11C [Zea mays]
0.954545

Zea mays

3868
5149

&gt:gi|226958337|ref|NP_001152941.1|

ras-related protein Rab11C [Zea mays]

&gt:gi|195629564|gb|ACG36423.1|

ras-related protein Rab11C [Zea mays]

&gt:gi|195644124|gb|ACG41530.1|

ras-related protein Rab11C [Zea mays]

&gt:gi|223973589|gb|ACN30982.1|

unknown [Zea mays]

NP_001054408
115461616
Os05g0105100 [Oryza sativa Japonica Group]
0.945455

Oryza sativa Japonica Group
3869
5150

&gt:gi|46359908|gb|AAS88840.1|

putative GTP-binding protein

[Oryza sativa Japonica Group]

&gt:gi|52353601|gb|AAU44167.1|

putative GTP-binding protein

[Oryza sativa Japonica Group]

&gt:gi|113577959|dbj|BAF16322.1|

Os05g0105100 [Oryza sativa Japonica Group]

&gt:gi|125550513|gb|EAY96222.1|

hypothetical protein OsI_18113

[Oryza sativa Indica Group]

&gt:gi|215734964|dbj|BAG95686.1|

unnamed protein product

[Oryza sativa Japonica Group]

&gt:gi|222629896|gb|EEE62028.1|

hypothetical protein OsJ_16810

[Oryza sativa Japonica Group]

BAK04054
326521851
predicted protein
0.859091

Hordeum vulgare subsp. vulgare
3870
5151

[Hordeum vulgare subsp. vulgare]

XP_002892514
297849265
hypothetical protein ARALYDRAFT_888208
0.781818

Arabidopsis lyrata subsp. lyrata
3871
5152

[Arabidopsis lyrata subsp. lyrata]

&gt:gi|297338356|gb|EFH68773.1|

hypothetical protein ARALYDRAFT_888208

[Arabidopsis lyrata subsp. lyrata]

NP_172434
30681250
Ras-related protein RABA2a
0.777273

Arabidopsis thaliana

3872
5153

[Arabidopsis thaliana]

&gt:gi|3024516|sp|O04486.1|RAA2A_ARATH

RecName: Full = Ras-related protein RABA2a;

Short = AtRABA2a;

AltName: Full = Ras-related protein Rab11C;

Short = AtRab11C; Flags: Precursor

&gt:gi|2160157|gb|AAB60720.1|

Strong similarity to A. thaliana

ara-2 (gb|ATHARA2). ESTs

gb|ATTS2483, gb|ATTS2484, gb|AA042159

come from this gene

[Arabidopsis thaliana]

&gt:gi|2231303|gb|AAB61994.1|

ras-related small GTPase

[Arabidopsis thaliana]

&gt:gi|15010638|gb|AAK73978.1|

At1g09630/F21M12_2 [Arabidopsis thaliana]

&gt:gi|21553810|gb|AAM62903.1|

putative RAS-related protein RAB11C

[Arabidopsis thaliana]

&gt:gi|22137284|gb|AAM91487.1|

At1g09630/F21M12_2 [Arabidopsis thaliana]

&gt:gi|332190350|gb|AEE28471.1|

Ras-related protein RABA2a

[Arabidopsis thaliana]

XP_002264444
225465199
PREDICTED: hypothetical protein
0.795455

Vitis vinifera

3873
5154

[Vitis vinifera]

&gt:gi|297739506|emb|CBI29688.3|

unnamed protein product

[Vitis vinifera]

NP_001147252
226491887
ras-related protein Rab11C [Zea mays]
0.781818

Zea mays

3874
5155

&gt:gi|195609118|gb|ACG26389.1|

ras-related protein Rab11C [Zea mays]

ACU23049
255645099
unknown [Glycine max]
0.772727

Glycine max

3875
5156

XP_002331128
224120065
predicted protein [Populus trichocarpa]
0.772727

Populus trichocarpa

3876
5157

&gt:gi|222872856|gb|EEF09987.1|

predicted protein [Populus trichocarpa]

627-646
XP_002489255
253761759
hypothetical protein SORBIDRAFT_0012s021070
1

Sorghum bicolor

3877
5158

[Sorghum bicolor]

&gt:gi|241947115|gb|EES20260.1|

hypothetical protein SORBIDRAFT_0012s021070

[Sorghum bicolor]

NP_001149604
226532613
LOC100283230 [Zea mays]
0.976959

Zea mays

3878
5159

&gt:gi|195628412|gb|ACG36036.1|

ras-related protein Rab11D [Zea mays]

&gt:gi|224032313|gb|ACN35232.1|

unknown [Zea mays]

NP_001064476
115481765
Os10g0377400 [Oryza sativa Japonica Group]
0.953917

Oryza sativa Japonica Group
3879
5160

&gt:gi|78708412|gb|ABB47387.1|

Ras-related protein Rab11D, putative,

expressed [Oryza sativa Japonica Group]

&gt:gi|113639085|dbj|BAF26390.1|

Os10g0377400 [Oryza sativa Japonica Group]

&gt:gi|215767227|dbj|BAG99455.1|

unnamed protein product

[Oryza sativa Japonica Group]

&gt:gi|218184417|gb|EEC66844.1|

hypothetical protein OsI_33317

[Oryza sativa Indica Group]

&gt:gi|222612729|gb|EEE50861.1|

hypothetical protein OsJ_31310

[Oryza sativa Japonica Group]

XP_002465727
242036664
hypothetical protein SORBIDRAFT_01g044550
0.917051

Sorghum bicolor

3880
5161

[Sorghum bicolor]

&gt:gi|241919581|gb|EER92725.1|

hypothetical protein SORBIDRAFT_01g044550

[Sorghum bicolor]

NP_001151068
226529762
ras-related protein Rab11D [Zea mays]
0.917051

Zea mays

3881
5162

&gt:gi|226958362|ref|NP_001152898.1|

hypothetical protein LOC100272235

[Zea mays]

&gt:gi|194696242|gb|ACF82205.1|

unknown [Zea mays]

&gt:gi|195644068|gb|ACG41502.1|

ras-related protein Rab11D [Zea mays]

NP_001151560
226503740
ras-related protein Rab11D [Zea mays]
0.912442

Zea mays

3882
5163

&gt:gi|194708702|gb|ACF88435.1|

unknown [Zea mays]

&gt:gi|195647718|gb|ACG43327.1|

ras-related protein Rab11D [Zea mays]

BAJ93377
326528454
predicted protein
0.921659

Hordeum vulgare subsp. vulgare
3883
5164

[Hordeum vulgare subsp. vulgare]

AAM08543
17298574
Putative Ras-related protein Rab
0.889401

Oryza sativa Japonica Group
3884
5165

[Oryza sativa Japonica Group]

XP_002310552
224096150
predicted protein [Populus trichocarpa]
0.843318

Populus trichocarpa

3885
5166

&gt:gi|222853455|gb|EEE91002.1|

predicted protein [Populus trichocarpa]

XP_002273530
225468179
PREDICTED: hypothetical protein
0.829493

Vitis vinifera

3886
5167

[Vitis vinifera]

&gt:gi|147811153|emb|CAN70163.1|

hypothetical protein VITISV_039255

[Vitis vinifera]

241-260
NP_001141352
226529852
hypothetical protein LOC100273443
1

Zea mays

3887
5168

[Zea mays]

&gt:gi|194704134|gb|ACF86151.1|

unknown [Zea mays]

902-921
NP_001168477
293334238
hypothetical protein LOC100382253
1

Zea mays

3888
5169

[Zea mays]

&gt:gi|223948517|gb|ACN28342.1|

unknown [Zea mays]

ACR36409
238010747
unknown [Zea mays]
0.870253

Zea mays

3889
5170

615-634
XP_002437204
242093427
hypothetical protein SORBIDRAFT_10g022830
1

Sorghum bicolor

3890
5171

[Sorghum bicolor]

&gt:gi|241915427|gb|EER88571.1|

hypothetical protein SORBIDRAFT_10g022830

[Sorghum bicolor]

NP_001150723
226503328
pectate lyase [Zea mays]
0.865639

Zea mays

3891
5172

&gt:gi|195641318|gb|ACG40127.1|

pectate lyase precursor [Zea mays]

NP_001057945
115468691
Os06g0583900 [Oryza sativa Japonica Group]
0.751101

Oryza sativa Japonica Group
3892
5173

&gt:gi|55296520|dbj|BAD68734.1|

putative pectate lyase

[Oryza sativa Japonica Group]

&gt:gi|113595985|dbj|BAF19859.1|

Os06g0583900 [Oryza sativa Japonica Group]

&gt:gi|215704206|dbj|BAG93046.1|

unnamed protein product

[Oryza sativa Japonica Group]

&gt:gi|218198444|gb|EEC80871.1|

hypothetical protein OsI_23497

[Oryza sativa Indica Group]

BAK06965
326513449
predicted protein
0.729075

Hordeum vulgare subsp. vulgare
3893
5174

[Hordeum vulgare subsp. vulgare]

329-348
XP_002447622
242075371
hypothetical protein SORBIDRAFT_06g009000
1

Sorghum bicolor

3894
5175

[Sorghum bicolor]

&gt:gi|241938805|gb|EES11950.1|

hypothetical protein SORBIDRAFT_06g009000

[Sorghum bicolor]

759-778
NP_001130136
212275801
hypothetical protein LOC100191230
1

Zea mays

3895
5176

[Zea mays]

&gt:gi|194688374|gb|ACF78271.1|

unknown [Zea mays]

&gt:gi|223946699|gb|ACN27433.1|

unknown [Zea mays]

&gt:gi|224033665|gb|ACN35908.1|

unknown [Zea mays]

ACG32118
195620575
exopolygalacturonase precursor
0.985577

Zea mays

3896
5177

[Zea mays]

XP_002455693
242053094
hypothetical protein SORBIDRAFT_03g021050
0.834135

Sorghum bicolor

3897
5178

[Sorghum bicolor]

&gt:gi|241927668|gb|EES00813.1|

hypothetical protein SORBIDRAFT_03g021050

[Sorghum bicolor]

NP_001141594
226503987
hypothetical protein LOC100273711
0.831731

Zea mays

3898
5179

[Zea mays]

&gt:gi|194705208|gb|ACF86688.1|

unknown [Zea mays]

ACG34252
195624843
exopolygalacturonase precursor
0.829327

Zea mays

3899
5180

[Zea mays]

419-438
XP_002464517
242034244
hypothetical protein SORBIDRAFT_01g019940
1

Sorghum bicolor

3900
5181

[Sorghum bicolor]

&gt:gi|241918371|gb|EER91515.1|

hypothetical protein SORBIDRAFT_01g019940

[Sorghum bicolor]

NP_001168725
293336668
hypothetical protein LOC100382517
0.858

Zea mays

3901
5182

[Zea mays]

&gt:gi|223950415|gb|ACN29291.1|

unknown [Zea mays]

1035-1054
XP_002447810
242075747
hypothetical protein SORBIDRAFT_06g016230
1

Sorghum bicolor

3902
5183

[Sorghum bicolor]

&gt:gi|241938993|gb|EES12138.1|

hypothetical protein SORBIDRAFT_06g016230

[Sorghum bicolor]

654-673
XP_002460936
242046129
hypothetical protein SORBIDRAFT_02g037770
1

Sorghum bicolor

3903
5184

[Sorghum bicolor]

&gt:gi|241924313|gb|EER97457.1|

hypothetical protein SORBIDRAFT_02g037770

[Sorghum bicolor]

NP_001145615
226507742
hypothetical protein LOC100279098
0.873846

Zea mays

3904
5185

[Zea mays]

&gt:gi|195658887|gb|ACG48911.1|

hypothetical protein [Zea mays]

NP_001145067
226495966
hypothetical protein LOC100278263
0.830769

Zea mays

3905
5186

[Zea mays]

&gt:gi|195650593|gb|ACG44764.1|

hypothetical protein [Zea mays]

1012-1031
XP_002452495
242062411
hypothetical protein SORBIDRAFT_04g026900
1

Sorghum bicolor

3906
5187

[Sorghum bicolor]

&gt:gi|241932326|gb|EES05471.1|

hypothetical protein SORBIDRAFT_04g026900

[Sorghum bicolor]

ACF88069
194707969
unknown [Zea mays]
0.898947

Zea mays

3907
5188

NP_001152245
226533273
lysosomal protective protein [Zea mays]
0.907368

Zea mays

3908
5189

&gt:gi|195654245|gb|ACG46590.1|

lysosomal protective protein precursor

[Zea mays]

NP_001047514
115447468
Os02g0634700 [Oryza sativa Japonica Group]
0.825263

Oryza sativa Japonica Group
3909
5190

&gt:gi|49387538|dbj|BAD25094.1|

putative carboxypeptidase D

[Oryza sativa Japonica Group]

&gt:gi|49388186|dbj|BAD25312.1|

putative carboxypeptidase D

[Oryza sativa Japonica Group]

&gt:gi|113537045|dbj|BAF09428.1|

Os02g0634700 [Oryza sativa Japonica Group]

&gt:gi|215737473|dbj|BAG96603.1|

unnamed protein product

[Oryza sativa Japonica Group]

&gt:gi|215741081|dbj|BAG97576.1|

unnamed protein product

[Oryza sativa Japonica Group]

&gt:gi|222623302|gb|EEE57434.1|

hypothetical protein OsJ_07638

[Oryza sativa Japonica Group]

EEC73659
54362548
hypothetical protein OsI_08191
0.825263

Oryza sativa Indica Group
3910

[Oryza sativa Indica Group]

ABF70080
102139931
serine carboxypeptidase (carboxypeptidase D),
0.722105

Musa acuminata

3911
5191

putative [Musa acuminata]

1137-1156
XP_002451244
242071934
hypothetical protein SORBIDRAFT_05g026400
1

Sorghum bicolor

3912
5192

[Sorghum bicolor]

&gt:gi|241937087|gb|EES10232.1|

hypothetical protein SORBIDRAFT_05g026400

[Sorghum bicolor]

NP_001145980
226531268
hypothetical protein LOC100279508
0.834177

Zea mays

3913
5193

[Zea mays]

&gt:gi|219885199|gb|ACL52974.1|

unknown [Zea mays]

NP_001068441
115486594
Os11g0673200 [Oryza sativa Japonica Group]
0.777215

Oryza sativa Japonica Group
3914
5194

&gt:gi|113645663|dbj|BAF28804.1|

Os11g0673200 [Oryza sativa Japonica Group]

ACG29242
195614823
auxin-induced beta-glucosidase [Zea mays]
0.702532

Zea mays

3915
5195

EAY81823
54362548
hypothetical protein OsI_36995
0.775949

Oryza sativa Indica Group
3916

[Oryza sativa Indica Group]

ABA95273
108863896
Beta-D-xylosidase, putative, expressed
0.777215

Oryza sativa Japonica Group
3917

[Oryza sativa Japonica Group]

951-970
NP_001147443
226493965
peroxidase 52[Zea mays]
1

Zea mays

3918
5196

&gt:gi|195611432|gb|ACG27546.1|

peroxidase 52 precursor [Zea mays]

EEC75221
54362548
hypothetical protein OsI_11488
0.779456

Oryza sativa Indica Group
3919

[Oryza sativa Indica Group]

CAH69282
55700946
TPA: class III peroxidase 40 precursor
0.776435

Oryza sativa Japonica Group
3920
5197

[Oryza sativa Japonica Group]

ABF95843
108705663
Peroxidase 52 precursor, putative,
0.776435

Oryza sativa Japonica Group
3921

expressed [Oryza sativa Japonica Group]

&gt:gi|222624896|gb|EEE59028.1|

hypothetical protein OsJ_10775

[Oryza sativa Japonica Group]

BAK00939
326529090
predicted protein
0.767372

Hordeum vulgare subsp. vulgare
3922
5198

[Hordeum vulgare subsp. vulgare]

1197-1216
ACG45528
195652120
ubiquitin-protein ligase [Zea mays]
1

Zea mays

3923
5199

NP_001152043
226491951
ubiquitin-protein ligase [Zea mays]
0.997015

Zea mays

3924
5200

&gt:gi|194697400|gb|ACF82784.1|

unknown [Zea mays]

&gt:gi|219886369|gb|ACL53559.1|

unknown [Zea mays]

&gt:gi|223942179|gb|ACN25173.1|

unknown [Zea mays]

&gt:gi|224028595|gb|ACN33373.1|

unknown [Zea mays]

XP_002454240
242065901
hypothetical protein SORBIDRAFT_04g027350
0.877612

Sorghum bicolor

3925
5201

[Sorghum bicolor]

&gt:gi|241934071|gb|EES07216.1|

hypothetical protein SORBIDRAFT_04g027350

[Sorghum bicolor]

NP_001048172
115448784
Os02g0757700 [Oryza sativa Japonica Group]
0.79403

Oryza sativa Japonica Group
3926
5202

&gt:gi|46805687|dbj|BAD17088.1|

F-box protein-like

[Oryza sativa Japonica Group]

&gt:gi|113537703|dbj|BAF10086.1|

Os02g0757700 [Oryza sativa Japonica Group]

&gt:gi|125541199|gb|EAY87594.1|

hypothetical protein OsI_09005

[Oryza sativa Indica Group]

&gt:gi|125583751|gb|EAZ24682.1|

hypothetical protein OsJ_08452

[Oryza sativa Japonica Group]

NP_001141525
226506077
hypothetical protein LOC100273637
0.847761

Zea mays

3927
5203

[Zea mays]

&gt:gi|194696402|gb|ACF82285.1|

unknown [Zea mays]

&gt:gi|194704930|gb|ACF86549.1|

unknown [Zea mays]

ACF79744
194691319
unknown [Zea mays]
0.844776

Zea mays

3928
5204

ACG31703
195619745
ubiquitin-protein ligase [Zea mays]
0.844776

Zea mays

3929
5205

NP_001057164
115467129
Os06g0219700 [Oryza sativa Japonica Group]
0.728358

Oryza sativa Japonica Group
3930
5206

&gt:gi|51535368|dbj|BAD37239.1|

F-box protein-like

[Oryza sativa Japonica Group]

&gt:gi|113595204|dbj|BAF19078.1|

Os06g0219700 [Oryza sativa Japonica Group]

&gt:gi|125554574|gb|EAZ00180.1|

hypothetical protein OsI_22185

[Oryza sativa Indica Group]

&gt:gi|125596515|gb|EAZ36295.1|

hypothetical protein OsJ_20616

[Oryza sativa Japonica Group]

&gt:gi|215697729|dbj|BAG91723.1|

unnamed protein product

[Oryza sativa Japonica Group]

BAJ92240
326514179
predicted protein
0.701493

Hordeum vulgare subsp. vulgare
3931
5207

[Hordeum vulgare subsp. vulgare]

779-798
AAR30916
39777292
phytochrome B [Sorghum propinquum]
1

Sorghum propinquum

3932

AAR30915
39777290
phytochrome B
0.998301

Sorghum bicolor subsp. × drummondii
3933

[Sorghum bicolor subsp. × drummondii]

XP_002467973
242041156
hypothetical protein SORBIDRAFT_01g037340
0.998301

Sorghum bicolor

3934
5208

[Sorghum bicolor]

&gt:gi|39777261|gb|AAR30900.1|

phytochrome B [Sorghum bicolor]

&gt:gi|39777263|gb|AAR30901.1|

phytochrome B [Sorghum bicolor]

&gt:gi|39777265|gb|AAR30902.1|

phytochrome B [Sorghum bicolor]

&gt:gi|39777269|gb|AAR30904.1|

phytochrome B [Sorghum bicolor]

&gt:gi|39777275|gb|AAR30907.1|

phytochrome B

[Sorghum bicolor subsp.

verticilliflorum]

&gt:gi|39777277|gb|AAR30908.1|

phytochrome B

[Sorghum bicolor subsp.

verticilliflorum]

&gt:gi|39777279|gb|AAR30909.1|

phytochrome B

[Sorghum bicolor subsp.

verticilliflorum]

&gt:gi|39777281|gb|AAR30910.1|

phytochrome B

[Sorghum bicolor subsp.

verticilliflorum]

&gt:gi|39777283|gb|AAR30911.1|

phytochrome B

[Sorghum bicolor subsp.

verticilliflorum]

&gt:gi|39777285|gb|AAR30912.1|

phytochrome B

[Sorghum bicolor subsp.

verticilliflorum]

&gt:gi|39777287|gb|AAR30913.1|

phytochrome B

[Sorghum bicolor subsp.

verticilliflorum]

&gt:gi|241921827|gb|EER94971.1|

hypothetical protein SORBIDRAFT_01g037340

[Sorghum bicolor]

AAR30914
39777288
phytochrome B
0.997451

Sorghum bicolor subsp.
3935

[Sorghum bicolor subsp.

verticilliflorum

verticilliflorum]

AAR30903
39777266
phytochrome B [Sorghum bicolor]
0.997451

Sorghum bicolor

3936

AAR30905
39777270
phytochrome B [Sorghum bicolor]
0.996602

Sorghum bicolor

3937

&gt:gi|39777273|gb|AAR30906.1|

phytochrome B [Sorghum bicolor]

P93527

RecName: Full = Phytochrome B
0.995752

Sorghum bicolor

3938

&gt:gi|7110162|gb|AAB41398.2|

phytochrome B [Sorghum bicolor]

NP_001169810
293335472
hypothetical protein LOC100383702
0.95582

Zea mays

3939
5209

[Zea mays]

&gt:gi|37926866|gb|AAP06788.1|

phytochrome B1 apoprotein [Zea mays]

NP_001168077
293336622
hypothetical protein LOC100381811
0.932031

Zea mays

3940
5210

[Zea mays]

&gt:gi|37926881|gb|AAP06789.1|

phytochrome B2 apoprotein [Zea mays]

Q10MG9

RecName: Full = Phytochrome B
0.912489

Oryza sativa Japonica Group
3941

&gt:gi|30578178|dbj|BAC76432.1|

phytochrome B

[Oryza sativa Japonica Group]

&gt:gi|57506674|dbj|BAD86669.1|

phytochrome B

[Oryza sativa Japonica Group]

&gt:gi|108707763|gb|ABF95558.1|

Phytochrome B, putative, expressed

[Oryza sativa Japonica Group]

1398-1417
NP_001146696
226503338
hypothetical protein LOC100280297
1

Zea mays

3942
5211

[Zea mays]

&gt:gi|219888377|gb|ACL54563.1|

unknown [Zea mays]

606-625
NP_001151271
226500783
beta-amylase [Zea mays]
1

Zea mays

3943
5212

&gt:gi|195645426|gb|ACG42181.1|

beta-amylase [Zea mays]

XP_002467860
242040930
hypothetical protein SORBIDRAFT_01g035370
0.815642

Sorghum bicolor

3944
5213

[Sorghum bicolor]

&gt:gi|241921714|gb|EER94858.1|

hypothetical protein SORBIDRAFT_01g035370

[Sorghum bicolor]

Predicted
269-290
ACN35534
224032916
unknown [Zea mays]
1

Zea mays

3945
5214

zma

mir

50486

ACG33974
195624287
hypothetical protein [Zea mays]
0.991189

Zea mays

3946
5215

NP_001136584
219363442
hypothetical protein LOC100216707
0.894273

Zea mays

3947
5216

[Zea mays]

&gt:gi|194696272|gb|ACF82220.1|

unknown [Zea mays]

XP_002466626
242038462
hypothetical protein SORBIDRAFT_01g011230
0.854626

Sorghum bicolor

3948
5217

[Sorghum bicolor]

&gt:gi|241920480|gb|EER93624.1|

hypothetical protein SORBIDRAFT_01g011230

[Sorghum bicolor]

NP_001050978
115454754
Os03g0696000 [Oryza sativa Japonica Group]
0.76652

Oryza sativa Japonica Group
3949
5218

&gt:gi|108710552|gb|ABF98347.1| expressed

protein [Oryza sativa Japonica Group]

&gt:gi|113549449|dbj|BAF12892.1|

Os03g0696000 [Oryza sativa Japonica Group]

&gt:gi|215766532|dbj|BAG98840.1|

unnamed protein product

[Oryza sativa Japonica Group]

Predicted
1103-1122
NP_001130769
212276197
hypothetical protein LOC100191873 [Zea mays]
1

Zea mays

3950
5219

zma

&gt:gi|194690070|gb|ACF79119.1|

mir

unknown [Zea mays]

50570

ACG47274
195655612
cys2/His2 zinc-finger transcription
0.961877

Zea mays

3951
5220

factor [Zea mays]

NP_001152162
226532358
cys2/His2 zinc-finger transcription
0.777126

Zea mays

3952
5221

factor [Zea mays]

&gt:gi|195653369|gb|ACG46152.1|

cys2/His2 zinc-finger transcription

factor [Zea mays]

&gt:gi|223947915|gb|ACN28041.1|

unknown [Zea mays]

XP_002464952
242035114
hypothetical protein SORBIDRAFT_01g029370
0.765396

Sorghum bicolor

3953
5222

[Sorghum bicolor]

&gt:gi|241918806|gb|EER91950.1|

hypothetical protein SORBIDRAFT_01g029370

[Sorghum bicolor]

Predicted
336-355
ACG38830
195638723
nucleotide binding protein [Zea mays]
1

Zea mays

3954
5223

zma

mir

50682

NP_001150233
226495198
nucleotide binding protein [Zea mays]
0.925466

Zea mays

3955
5224

&gt:gi|195637698|gb|ACG38317.1|

nucleotide binding protein [Zea mays]

138-157
XP_002453342
242064105
hypothetical protein SORBIDRAFT_04g004 160
1

Sorghum bicolor

3956
5225

[Sorghum bicolor]

&gt:gi|241933173|gb|EES06318.1|

hypothetical protein SORBIDRAFT_04g004 160

[Sorghum bicolor]

EEE56349
54398660
hypothetical protein OsJ_05464
0.838996

Oryza sativa Japonica Group
3957

[Oryza sativa Japonica Group]

BAD28046
45382008
putative Helicase SKI2W
0.774742

Oryza sativa Japonica Group
3958

[Oryza sativa Japonica Group]

554-573
XP_002466420
242038050
hypothetical protein SORBIDRAFT_01g007510
1

Sorghum bicolor

3959
5226

[Sorghum bicolor]

&gt:gi|241920274|gb|EER93418.1|

hypothetical protein SORBIDRAFT_01g007510

[Sorghum bicolor]

Predicted
24-42
XP_002437845
242094709
hypothetical protein SORBIDRAFT_10g003610
1

Sorghum bicolor

3960
5227

zma

[Sorghum bicolor]

mir

&gt:gi|241916068|gb|EER89212.1|

50701

hypothetical protein SORBIDRAFT_10g003610

[Sorghum bicolor]

NP_001149507
226500789
LOC100283133 [Zea mays]
0.986014

Zea mays

3961
5228

&gt:gi|195621266|gb|ACG32463.1|

trafficking protein particle complex

subunit 4 [Zea mays]

&gt:gi|195627666|gb|ACG35663.1|

trafficking protein particle complex

subunit 4 [Zea mays]

&gt:gi|223974417|gb|ACN31396.1|

unknown [Zea mays]

&gt:gi|223974509|gb|ACN3 1442.1|

unknown [Zea mays]

NP_001131958
212721385
hypothetical protein LOC100193354
0.979021

Zea mays

3962
5229

[Zea mays]

&gt:gi|194693036|gb|ACF80602.1|

unknown [Zea mays]

&gt:gi|194696020|gb|ACF82094.1|

unknown [Zea mays]

&gt:gi|223973055|gb|ACN30715.1|

unknown [Zea mays]

ACG45824
195652712
trafficking protein particle complex
0.972028

Zea mays

3963
5230

subunit 4 [Zea mays]

ACG47442
195655948
trafficking protein particle complex
0.972028

Zea mays

3964
5231

subunit 4 [Zea mays]

NP_001059557
115471916
Os07g0454700 [Oryza sativa Japonica Group]
0.937063

Oryza sativa Japonica Group
3965
5232

&gt:gi|28971996|dbj|BAC65404.1|

synbindin-like protein

[Oryza sativa Japonica Group]

&gt:gi|113611093|dbj|BAF21471.1|

Os07g0454700 [Oryza sativa Japonica Group]

&gt:gi|125600106|gb|EAZ39682.1|

hypothetical protein OsJ_24117

[Oryza sativa Japonica Group]

&gt:gi|215764944|dbj|BAG86641.1|

unnamed protein product

[Oryza sativa Japonica Group]

&gt:gi|218199540|gb|EEC81967.1|

hypothetical protein OsI_25868

[Oryza sativa Indica Group]

NP_001174604
297724480
Os06g0151300 [Oryza sativa Japonica Group]
0.923077

Oryza sativa Japonica Group
3966
5233

&gt:gi|222634966|gb|EEE65098.1|

hypothetical protein OsJ_20146

[Oryza sativa Japonica Group]

&gt:gi|255676723|dbj|BAH93332.1|

Os06g0151300 [Oryza sativa Japonica Group]

XP_002534307
255587545
synbindin, putative [Ricinus communis]
0.839161

Ricinus communis

3967
5234

&gt:gi|223525526|gb|EEF28075.1|

synbindin, putative [Ricinus communis]

XP_002281149
225450513
PREDICTED: hypothetical protein
0.846154

Vitis vinifera

3968
5235

[Vitis vinifera]

&gt:gi|147807581|emb|CAN66318.1|

hypothetical protein VITISV_040622

[Vitis vinifera]

&gt:gi|296089818|emb|CBI39637.3|

unnamed protein product

[Vitis vinifera]

XP_002314001
224105980
predicted protein [Populus trichocarpa]
0.839161

Populus trichocarpa

3969
5236

&gt:gi|222850409|gb|EEE87956.1|

predicted protein [Populus trichocarpa]

Target sequences according to the teachings of the invention can be overexpressed or silenced as described herein. Methods of generating transgenic plants are described in Example 6, selection according to expression level is described in Example 7, selection according to tolerance to abiotic stress is described in Examples 8 and 9, above. Generally, target genes of upregulated miRNAs are contemplated to be downregulated; conversely target genes of downregulated miRNAs are contemplated to be upregulated according to the present teachings.

TABLE 23

Abbreviations of Plant Species

Abbrevi-

Common Name
Organism Name
ation

Peanut

Arachis hypogaea

ahy

Arabidopsis lyrata

Arabidopsis lyrata

aly

Rocky Mountain Columbine

Aquilegia coerulea

aqc

Tausch's goatgrass

Aegilops taushii

ata

Arabidopsis thaliana

Arabidopsis thaliana

ath

Grass

Brachypodium distachyon

bdi

Brassica napus canola

Brassica napus

bna

(“liftit”)

Brassica oleracea wild

Brassica oleracea

bol

cabbage

Brassica rapa yellow

Brassica rapa

bra

mustard

Clementine

Citrus clementine

ccl

Orange

Citrus sinensis

csi

Trifoliate orange

Citrus trifoliata

ctr

Glycine max

Glycine max

gma

Wild soybean

Glycine soja

gso

Barley

Hordeum vulgare

hvu

Lotus japonicus

Lotus japonicus

lja

Medicago truncatula -

Medicago truncatula

mtr

Barrel Clover (“tiltan”)

Oryza sativa

Oryza sativa

osa

European spruce

Picea abies

pab

Physcomitrella patens

Physcomitrella patens

ppt

(moss)

Pinus taeda - Loblolly

Pinus taeda

pta

Pine

Populus trichocarpa -

Populus trichocarpa

ptc

black cotton wood

Castor bean (“kikayon”)

Ricinus communis

rco

Sorghum bicolor Dura

Sorghum bicolor

sbi

tomato microtom

Solanum lycopersicum

sly

Selaginella

Selaginella

smo

moellendorffii

moellendorffii

Sugarcane

Saccharum spp
ssp

Triticum aestivum

Triticum aestivum

tae

cacao tree and cocoa tree

Theobroma cacao

tcc

Vitis vinifera Grapes

Vitis vinifera

vvi

corn

Zea mays

zma

Although the invention has been described in conjunction with specific embodiments thereof, it is evident that many alternatives, modifications and variations will be apparent to those skilled in the art. Accordingly, it is intended to embrace all such alternatives, modifications and variations that fall within the spirit and broad scope of the appended claims.

All publications, patents and patent applications mentioned in this specification are herein incorporated in their entirety by reference into the specification, to the same extent as if each individual publication, patent or patent application was specifically and individually indicated to be incorporated herein by reference. In addition, citation or identification of any reference in this application shall not be construed as an admission that such reference is available as prior art to the present invention. To the extent that section headings are used, they should not be construed as necessarily limiting.

	Number	Date	Country
	61553340	Oct 2011	US
	61553355	Oct 2011	US

ISOLATED POLYNUCLEOTIDES AND POLYPEPTIDES, TRANSGENIC PLANTS COMPRISING SAME AND USES THEREOF IN IMPROVING ABIOTIC STRESS TOLERANCE, NITROGEN USE EFFICIENCY, BIOMASS, VIGOR OR YIELD OF PLANTS

Information

Publication Number

Date Filed

Date Published

Inventors

CPC

US Classifications

International Classifications

Abstract

Description

Claims

PCT Information

Provisional Applications (2)