Ketoamides with cyclic P4's as inhibitors of NS3 serine protease of hepatitis C virus

Information

  • Patent Grant
  • 7619094
  • Patent Number
    7,619,094
  • Date Filed
    Monday, November 20, 2006
    18 years ago
  • Date Issued
    Tuesday, November 17, 2009
    15 years ago
Abstract
The present invention discloses novel compounds which have HCV protease inhibitory activity as well as methods for preparing such compounds. In another embodiment, the invention discloses pharmaceutical compositions comprising such compounds as well as methods of using them to treat disorders associated with the HCV protease.
Description
BACKGROUND OF THE INVENTION

Hepatitis C virus (HCV) is a (+)-sense single-stranded RNA virus that has been implicated as the major causative agent in non-A, non-B hepatitis (NANBH), particularly in blood-associated NANBH (BB-NANBH) (see, International Patent Application Publication No. WO 89/04669 and European Patent Application Publication No. EP 381 216). NANBH is to be distinguished from other types of viral-induced liver disease, such as hepatitis A virus (HAV), hepatitis B virus (HBV), delta hepatitis virus (HDV), cytomegalovirus (CMV) and Epstein-Barr virus (EBV), as well as from other forms of liver disease such as alcoholism and primary biliar cirrhosis.


Recently, an HCV protease necessary for polypeptide processing and viral replication has been identified, cloned and expressed. (See, e.g., U.S. Pat. No. 5,712,145). This approximately 3000 amino acid polyprotein contains, from the amino terminus to the carboxy terminus, a nucleocapsid protein (C), envelope proteins (E1 and E2) and several non-structural proteins (NS1, 2, 3, 4a, 5a and 5b). NS3 is an approximately 68 kda protein, encoded by approximately 1893 nucleotides of the HCV genome, and has two distinct domains: (a) a serine protease domain consisting of approximately 200 of the N-terminal amino acids; and (b) an RNA-dependent ATPase domain at the C-terminus of the protein. The NS3 protease is considered a member of the chymotrypsin family because of similarities in protein sequence, overall three-dimensional structure and mechanism of catalysis. Other chymotrypsin-like enzymes are elastase, factor Xa, thrombin, trypsin, plasmin, urokinase, tPA and PSA. The HCV NS3 serine protease is responsible for proteolysis of the polypeptide (polyprotein) at the NS3/NS4a, NS4a/NS4b, NS4b/NS5a and NS5a/NS5b junctions and is thus responsible for generating four viral proteins during viral replication. This has made the HCV NS3 serine protease an attractive target for antiviral chemotherapy. The inventive compounds can inhibit such protease. They also can modulate the processing of hepatitis C virus (HCV) polypeptide.


It has been determined that the NS4a protein, an approximately 6 kda polypeptide, is a co-factor for the serine protease activity of NS3. Autocleavage of the NS3/NS4a junction by the NS3/NS4a serine protease occurs intramolecularly (i.e., cis) while the other cleavage sites are processed intermolecularly (i.e., trans).


Analysis of the natural cleavage sites for HCV protease revealed the presence of cysteine at P1 and serine at P1′ and that these residues are strictly conserved in the NS4a/NS4b, NS4b/NS5a and NS5a/NS5b junctions. The NS3/NS4a junction contains a threonine at P1 and a serine at P1′. The Cys→Thr substitution at NS3/NS4a is postulated to account for the requirement of cis rather than trans processing at this junction. See, e.q., Pizzi et al. (1994) Proc. Natl. Acad. Sci. (USA) 91:888-892, Failla et al. (1996) Folding & Design 1:35-42. The NS3/NS4a cleavage site is also more tolerant of mutagenesis than the other sites. See, eg., Kollykhalov et al. (1994) J. Virol. 68:7525-7533. It has also been found that acidic residues in the region upstream of the cleavage site are required for efficient cleavage. See, e.g., Komoda et al. (1994) J. Virol. 68:7351-7357.


Inhibitors of HCV protease that have been reported include antioxidants (see, International Patent Application Publication No. WO 98/14181), certain peptides and peptide analogs (see, International Patent Application Publication No. WO 98/17679, Landro et al. (1997) Biochem. 36:9340-9348, Ingallinella et al. (1998) Biochem. 37:8906-8914, Llinàs-Brunet et al. (1998) Bioorg. Med. Chem. Lett. 8:1713-1718), inhibitors based on the 70-amino acid polypeptide eglin c (Martin et al. (1998) Biochem. 37:11459-11468, inhibitors affinity selected from human pancreatic secretory trypsin inhibitor (hPSTI-C3) and minibody repertoires (MBip) (Dimasi et al. (1997) J. Virol. 71:7461-7469), cVHE2 (a “camelized” variable domain antibody fragment) (Martin et al. (1997) Protein Eng. 10:607-614), and α1-antichymotrypsin (ACT) (Elzouki et al.) (1997) J. Hepat. 27:42-28). A ribozyme designed to selectively destroy hepatitis C virus RNA has recently been disclosed (see, BioWorld Today 9(217): 4 (Nov. 10, 1998)).


Reference is also made to the PCT Publications, No. WO 98/17679, published Apr. 30, 1998 (Vertex Pharmaceuticals Incorporated); WO 98/22496, published May 28, 1998 (F. Hoffmann-La Roche AG); and WO 99/07734, published Feb. 18, 1999 (Boehringer Ingelheim Canada Ltd.).


HCV has been implicated in cirrhosis of the liver and in induction of hepatocellular carcinoma. The prognosis for patients suffering from HCV infection is currently poor. HCV infection is more difficult to treat than other forms of hepatitis due to the lack of immunity or remission associated with HCV infection. Current data indicates a less than 50% survival rate at four years post cirrhosis diagnosis. Patients diagnosed with localized resectable hepatocellular carcinoma have a five-year survival rate of 10-30%, whereas those with localized unresectable hepatocellular carcinoma have a five-year survival rate of less than 1%.


Reference is made to WO 00/59929 (U.S. Pat. No. 6,608,027, Assignee: Boehringer Ingelheim (Canada) Ltd.; Published Oct. 12, 2000) which discloses peptide derivatives of the formula:




embedded image


Reference is made to A. Marchetti et al, Synlett, S1, 1000-1002 (1999) describing the synthesis of bicylic analogs of an inhibitor of HCV NS3 protease. A compound disclosed therein has the formula:




embedded image


Reference is also made to W. Han et al, Bioorganic & Medicinal Chem. Lett, (2000) 10, 711-713, which describes the preparation of certain α-ketoamides, α-ketoesters and α-diketones containing allyl and ethyl functionalities.


Reference is also made to WO 00/09558 (Assignee: Boehringer Ingelheim Limited; Published Feb. 24, 2000) which discloses peptide derivatives of the formula:




embedded image



where the various elements are defined therein. An illustrative compound of that series is:




embedded image


Reference is also made to WO 00/09543 (Assignee: Boehringer Ingelheim Limited; Published Feb. 24, 2000) which discloses peptide derivatives of the formula:




embedded image



where the various elements are defined therein. An illustrative compound of that series is:




embedded image


Reference is also made to U.S. Pat. No. 6,608,027 (Boehringer Ingelheim, Canada) which discloses NS3 protease inhibitors of the type:




embedded image



wherein the various moieties are defined therein.


Current therapies for hepatitis C include interferon-α (INFα) and combination therapy with ribavirin and interferon. See, e.g., Beremguer et al. (1998) Proc. Assoc. Am. Physicians 110(2):98-112. These therapies suffer from a low sustained response rate and frequent side effects. See, e.g., Hoofnagle et al. (1997) N. Engl. J. Med. 336:347. Currently, no vaccine is available for HCV infection.


Reference is further made to WO 01/74768 (Assignee: Vertex Pharmaceuticals Inc) published Oct. 11, 2001, which discloses certain compounds of the following general formula (R is defined therein) as NS3-serine protease inhibitors of Hepatitis C virus:




embedded image



A specific compound disclosed in the afore-mentioned WO 01/74768 has the following formula:




embedded image


PCT Publications WO 01/77113; WO 01/081325; WO 02/08198; WO 02/08256; WO 02/08187; WO 02/08244; WO 02/48172; WO 02/08251; and pending U.S. patent application, Ser. No. 10/052,386, filed Jan. 18, 2002, disclose various types of peptides and/or other compounds as NS-3 serine protease inhibitors of hepatitis C virus. The disclosures of those applications are incorporated herein by reference thereto.


There is a need for new treatments and therapies for HCV infection. There is a need for compounds useful in the treatment or prevention or amelioration of one or more symptoms of hepatitis C.


There is a need for methods of treatment or prevention or amelioration of one or more symptoms of hepatitis C.


There is a need for methods for modulating the activity of serine proteases, particularly the HCV NS3/NS4a serine protease, using the compounds provided herein.


There is a need for methods of modulating the processing of the HCV polypeptide using the compounds provided herein.


SUMMARY OF THE INVENTION

In its many embodiments, the present invention provides a novel class of inhibitors of the HCV protease, pharmaceutical compositions containing one or more of the compounds, methods of preparing pharmaceutical formulations comprising one or more such compounds, and methods of treatment or prevention of HCV or amelioration of one or more of the symptoms of hepatitis C using one or more such compounds or one or more such formulations. Also provided are methods of modulating the interaction of an HCV polypeptide with HCV protease. Among the compounds provided herein, compounds that inhibit HCV NS3/NS4a serine protease activity are preferred. The present invention discloses compounds having the general structure shown in structural Formula 1:




embedded image



wherein:


R1 is H, OR8, NR9R10, or CHR9R10, wherein R8, R9 and R10 can be the same or different, each being independently selected from the group consisting of H, alkyl-, alkenyl-, alkynyl-, aryl-, heteroalkyl-, heteroaryl-, cycloalkyl-, heterocyclyl-, arylalkyl-, and heteroarylalkyl;


A and M can be the same or different, each being independently selected from R, OR, NHR, NRR′, SR, SO2R, and halo; or A and M are connected to each other (in other words, A-E-L-M taken together) such that the moiety:




embedded image



shown above in Formula I forms either a three, four, six, seven or eight-membered cycloalkyl, a four to eight-membered heterocyclyl, a six to ten-membered aryl, or a five to ten-membered heteroaryl;


E is C(H) or C(R);


L is C(H), C(R), CH2C(R), or C(R)CH2;


R, R′, R2, and R3 can be the same or different, each being independently selected from the group consisting of H, alkyl-, alkenyl-, alkynyl-, cycloalkyl-, heteroalkyl-, heterocyclyl-, aryl-, heteroaryl-, (cycloalkyl)alkyl-, (heterocyclyl)alkyl-, aryl-alkyl-, and heteroaryl-alkyl-; or alternately R and R′ in NRR′ are connected to each other such that NRR′ forms a four to eight-membered heterocyclyl;


and Y is selected from the following moieties:




embedded image


wherein G is NH or O, and R15, R16, R17, R18, R19 and R20 can be the same or different, each being independently selected from the group consisting of H, C1-C10 alkyl, C1-C10 heteroalkyl, C2-C10 alkenyl, C2-C10 heteroalkenyl, C2-C10 alkynyl, C2-C10 heteroalkynyl, C3-C8 cycloalkyl, C3-C8 heterocyclyl, aryl, heteroaryl, or alternately: (i) either R15 and R16 can be connected to each other to form a four to eight-membered cycloalkyl or heterocyclyl, or R15 and R19 are connected to each other to form a five to eight-membered cycloalkyl or heterocyclyl, or R15 and R20 are connected to each other to form a five to eight-membered cycloalkyl or heterocyclyl, and (ii) likewise, independently, R17 and R18 are connected to each other to form a three to eight-membered cycloalkyl or heterocyclyl,


wherein each of said alkyl, aryl, heteroaryl, cycloalkyl or heterocyclyl can be unsubstituted or optionally independently substituted with one or more moieties selected from the group consisting of: hydroxy, alkoxy, aryloxy, thio, alkylthio, arylthio, amino, amido, alkylamino, arylamino, alkylsulfonyl, arylsulfonyl, sulfonamido, alkylsulfonamido, arylsulfonamido, keto, carboxy, carbalkoxy, carboxamido, alkoxycarbonylamino, alkoxycarbonyloxy, alkylureido, arylureido, halo, cyano, and nitro.


The above-noted statement “A and M are connected to each other such that the moiety:




embedded image



shown above in Formula I forms either a three, four, six, seven or eight-membered cycloalkyl, a four to eight-membered heterocyclyl, a six to ten-membered aryl, or a five to ten-membered heteroaryl” can be illustrated in a non-limiting matter as follows. Thus, for example, in the case where A and M are connected such that the moiety:




embedded image



shown above in Formula I forms a six-membered cycloalkyl (cyclohexyl), Formula I can be depicted as:




embedded image



One with ordinary skill in the art will appreciate that similar depictions for Formula I can be arrived at when A and M shown above in the moiety:




embedded image



(i.e., M-L-E-A taken together) are connected to form a three, four, seven or eight-membered cycloalkyl, a four to eight-membered heterocyclyl, a six to ten-membered aryl, or a five to ten-membered heteroaryl.


In the above-noted definitions of R, R′, R2, and R3 preferred alkyl is made of one to ten carbon atoms, preferred alkenyl or alkynyl is made of two to ten carbon atoms, preferred cycloalkyl is made of three to eight carbon atoms, and preferred heteroalkyl, heteroaryl or heterocycloalkyl has one to six oxygen, nitrogen, sulfur, or phosphorus atoms.


The compounds represented by Formula I, by themselves or in combination with one or more other suitable agents disclosed herein, can be useful for treating diseases such as, for example, HCV, HIV, AIDS (Acquired Immune Deficiency Syndrome), and related disorders, as well as for modulating the activity of hepatitis C virus (HCV) protease, preventing HCV, or ameliorating one or more symptoms of hepatitis C. Such modulation, treatment, prevention or amelioration can be done with the inventive compounds as well as with pharmaceutical compositions or formulations comprising such compounds. Without being limited to theory, it is believed that the HCV protease may be the NS3 or NS4a protease. The inventive compounds can inhibit such protease. They can also modulate the processing of hepatitis C virus (HCV) polypeptide.







DETAILED DESCRIPTION

In an embodiment, the present invention discloses compounds which are represented by structural Formula 1 or a pharmaceutically acceptable salt, solvate or ester thereof, wherein the various moieties are as defined above.


In another embodiment, R1 is NR9R10, and R9 is H, R10 is H, alkyl, aryl, heteroalkyl, heteroaryl, cycloalkyl, alkyl-aryl, alkyl-heteroaryl, aryl-alkyl, alkenyl, alkynyl or heteroaryl-alkyl.


In another embodiment, R10 is selected from the group consisting of:




embedded image


In another embodiment, R2 is selected from the group consisting of the following moieties:




embedded image


embedded image


In another embodiment, R3 is selected from the group consisting of:




embedded image


embedded image


wherein R31 is OH or O-alkyl; and

    • R32 is H, C(O)CH3, C(O)OtBu or C(O)N(H)tBu.


      In an additional embodiment, R3 is selected from the group consisting of the following moieties:




embedded image



In another embodiment, Y is selected from the group consisting of:




embedded image



wherein Y30 and Y31 are selected from the group consisting of:




embedded image


embedded image


embedded image


embedded image


embedded image


embedded image


Y32 is selected from the group consisting of:




embedded image


and Y12 is selected from H, COOH, COOMe, CONH2, OMe, OH, OCF3, OCH(CH3)2, OC(CH3)3, F, Cl, Br, NH2, NHSO2CH3, NHC(O)CH3, NHCO2CH3, NO2, SO2NH2, CF3, Me, Et, isopropyl, cyclopropyl, t-butyl, phenyl.


In another embodiment, the moiety:




embedded image



is selected from the following structures:




embedded image


embedded image


embedded image


In an additional embodiment, the moiety:




embedded image



is selected from the following structures:




embedded image


embedded image


In a still additional embodiment, the moiety:




embedded image



is selected from the following structures:




embedded image


In a further additional embodiment, R1 is NHR10, where R10 is selected from the group consisting of:




embedded image



R2 is selected from the group consisting of the following moieties:




embedded image


embedded image



R3 is selected from the group consisting of the following moieties:




embedded image



Y is selected from the group consisting of:




embedded image


wherein Y30 and Y31 can be the same or different, each being independently selected from the group consisting of:




embedded image


embedded image


embedded image


embedded image


wherein Y32 is selected from the group consisting of:




embedded image


and Y12 is selected from H, COOH, COOMe, CONH2, OMe, OH, OCF3, OCH(CH3)2, OC(CH3)3, F, Cl, Br, NH2, NHSO2CH3, NHC(O)CH3, NHCO2CH3, NO2, SO2NH2, CF3, Me, Et, isopropyl, cyclopropyl, t-butyl, or phenyl; and the moiety:




embedded image


Representative compounds of the invention which exhibit excellent HCV protease inhibitory activity are listed later in this Description in Tables 1 and 2 along with their biological activity in HCV continuous assay (ranges of Ki* values in nanomolar, nM).


In an additional embodiment, this invention discloses the following compounds in Table 3:









TABLE 3









embedded image









embedded image









embedded image









embedded image









embedded image









embedded image









embedded image









embedded image









embedded image









embedded image









embedded image









embedded image









embedded image









embedded image









embedded image









embedded image









embedded image









embedded image









embedded image









embedded image











As used above, and throughout this disclosure, the following terms, unless otherwise indicated, shall be understood to have the following meanings:


“Patient” includes both human and animals.


“Mammal” means humans and other mammalian animals.


“Alkyl” means an aliphatic hydrocarbon group which may be straight or branched and comprising about 1 to about 20 carbon atoms in the chain. Preferred alkyl groups contain about 1 to about 12 carbon atoms in the chain. More preferred alkyl groups contain about 1 to about 6 carbon atoms in the chain. Branched means that one or more lower alkyl groups such as methyl, ethyl or propyl, are attached to a linear alkyl chain. “Lower alkyl” means a group having about 1 to about 6 carbon atoms in the chain which may be straight or branched. The term “substituted alkyl” means that the alkyl group may be substituted by one or more substituents which may be the same or different, each substituent being independently selected from the group consisting of halo, alkyl, aryl, cycloalkyl, cyano, hydroxy, alkoxy, alkylthio, amino, —NH(alkyl), —NH(cycloalkyl), —N(alkyl)2, —N(alkyl)2, carboxy and —C(O)O-alkyl. Non-limiting examples of suitable alkyl groups include methyl, ethyl, n-propyl, isopropyl and t-butyl.


“Alkenyl” means an aliphatic hydrocarbon group containing at least one carbon-carbon double bond and which may be straight or branched and comprising about 2 to about 15 carbon atoms in the chain. Preferred alkenyl groups have about 2 to about 12 carbon atoms in the chain; and more preferably about 2 to about 6 carbon atoms in the chain. Branched means that one or more lower alkyl groups such as methyl, ethyl or propyl, are attached to a linear alkenyl chain. “Lower alkenyl” means about 2 to about 6 carbon atoms in the chain which may be straight or branched. The term “substituted alkenyl” means that the alkenyl group may be substituted by one or more substituents which may be the same or different, each substituent being independently selected from the group consisting of halo, alkyl. aryl, cycloalkyl, cyano, alkoxy and —S(alkyl). Non-limiting examples of suitable alkenyl groups include ethenyl, propenyl, n-butenyl, 3-methylbut-2-enyl, n-pentenyl, octenyl and decenyl.


“Alkynyl” means an aliphatic hydrocarbon group containing at least one carbon-carbon triple bond and which may be straight or branched and comprising about 2 to about 15 carbon atoms in the chain. Preferred alkynyl groups have about 2 to about 12 carbon atoms in the chain; and more preferably about 2 to about 4 carbon atoms in the chain. Branched means that one or more lower alkyl groups such as methyl, ethyl or propyl, are attached to a linear alkynyl chain. “Lower alkynyl” means about 2 to about 6 carbon atoms in the chain which may be straight or branched. Non-limiting examples of suitable alkynyl groups include ethynyl, propynyl, 2-butynyl and 3-methylbutynyl. The term “substituted alkynyl” means that the alkynyl group may be substituted by one or more substituents which may be the same or different, each substituent being independently selected from the group consisting of alkyl, aryl and cycloalkyl.


“Aryl” means an aromatic monocyclic or multicyclic ring system comprising about 6 to about 14 carbon atoms, preferably about 6 to about 10 carbon atoms. The aryl group can be optionally substituted with one or more “ring system substituents” which may be the same or different, and are as defined herein. Non-limiting examples of suitable aryl groups include phenyl and naphthyl.


“Heteroaryl” means an aromatic monocyclic or multicyclic ring system comprising about 5 to about 14 ring atoms, preferably about 5 to about 10 ring atoms, in which one or more of the ring atoms is an element other than carbon, for example nitrogen, oxygen or sulfur, alone or in combination. Preferred heteroaryls contain about 5 to about 6 ring atoms. The “heteroaryl” can be optionally substituted by one or more “ring system substituents” which may be the same or different, and are as defined herein. The prefix aza, oxa or thia before the heteroaryl root name means that at least a nitrogen, oxygen or sulfur atom respectively, is present as a ring atom. A nitrogen atom of a heteroaryl can be optionally oxidized to the corresponding N-oxide. Non-limiting examples of suitable heteroaryls include pyridyl, pyrazinyl, furanyl, thienyl, pyrimidinyl, pyridone (including N-substituted pyridones), isoxazolyl, isothiazolyl, oxazolyl, thiazolyl, pyrazolyl, furazanyl, pyrrolyl, pyrazolyl, triazolyl, 1,2,4-thiadiazolyl, pyrazinyl, pyridazinyl, quinoxalinyl, phthalazinyl, oxindolyl, imidazo[1,2-a]pyridinyl, imidazo[2,1-b]thiazolyl, benzofurazanyl, indolyl, azaindolyl, benzimidazolyl, benzothienyl, quinolinyl, imidazolyl, thienopyridyl, quinazolinyl, thienopyrimidyl, pyrrolopyridyl, imidazopyridyl, isoquinolinyl, benzoazaindolyl, 1,2,4-triazinyl, benzothiazolyl and the like. The term “heteroaryl” also refers to partially saturated heteroaryl moieties such as, for example, tetrahydroisoquinolyl, tetrahydroquinolyl and the like.


“Aralkyl” or “arylalkyl” means an aryl-alkyl- group in which the aryl and alkyl are as previously described. Preferred aralkyls comprise a lower alkyl group. Non-limiting examples of suitable aralkyl groups include benzyl, 2-phenethyl and naphthalenylmethyl. The bond to the parent moiety is through the alkyl.


“Alkylaryl” means an alkyl-aryl- group in which the alkyl and aryl are as previously described. Preferred alkylaryls comprise a lower alkyl group. Non-limiting example of a suitable alkylaryl group is tolyl. The bond to the parent moiety is through the aryl.


“Cycloalkyl” means a non-aromatic mono- or multicyclic ring system comprising about 3 to about 10 carbon atoms, preferably about 5 to about 10 carbon atoms. Preferred cycloalkyl rings contain about 5 to about 7 ring atoms. The cycloalkyl can be optionally substituted with one or more “ring system substituents” which may be the same or different, and are as defined above. Non-limiting examples of suitable monocyclic cycloalkyls include cyclopropyl, cyclopentyl, cyclohexyl, cycloheptyl and the like. Non-limiting examples of suitable multicyclic cycloalkyls include 1-decalinyl, norbornyl, adamantyl and the like, as well as partially saturated species such as, for example, indanyl, tetrahydronaphthyl and the like.


“Halogen” or “halo” means fluorine, chlorine, bromine, or iodine. Preferred are fluorine, chlorine and bromine.


“Ring system substituent” means a substituent attached to an aromatic or non-aromatic ring system which, for example, replaces an available hydrogen on the ring system. Ring system substituents may be the same or different, each being independently selected from the group consisting of alkyl, alkenyl, alkynyl, aryl, heteroaryl, aralkyl, alkylaryl, heteroaralkyl, heteroarylalkenyl, heteroarylalkynyl, alkylheteroaryl, hydroxy, hydroxyalkyl, alkoxy, aryloxy, aralkoxy, acyl, aroyl, halo, nitro, cyano, carboxy, alkoxycarbonyl, aryloxycarbonyl, aralkoxycarbonyl, alkylsulfonyl, arylsulfonyl, heteroarylsulfonyl, alkylthio, arylthio, heteroarylthio, aralkylthio, heteroaralkylthio, cycloalkyl, heterocyclyl, —C(═N—CN)—NH2, —C(═NH)—NH2, —C(═NH)—NH(alkyl), Y1Y2N—, Y1Y2N-alkyl-, Y1Y2NC(O)—, Y1Y2NSO2— and —SO2NY1Y2, wherein Y1 and Y2 can be the same or different and are independently selected from the group consisting of hydrogen, alkyl, aryl, cycloalkyl, and aralkyl. “Ring system substituent” may also mean a single moiety which simultaneously replaces two available hydrogens on two adjacent carbon atoms (one H on each carbon) on a ring system. Examples of such moiety are methylene dioxy, ethylenedioxy, —C(CH3)2— and the like which form moieties such as, for example:




embedded image


“Heterocyclyl” means a non-aromatic saturated monocyclic or multicyclic ring system comprising about 3 to about 10 ring atoms, preferably about 5 to about 10 ring atoms, in which one or more of the atoms in the ring system is an element other than carbon, for example nitrogen, oxygen or sulfur, alone or in combination. There are no adjacent oxygen and/or sulfur atoms present in the ring system. Preferred heterocyclyls contain about 5 to about 6 ring atoms. The prefix aza, oxa or thia before the heterocyclyl root name means that at least a nitrogen, oxygen or sulfur atom respectively is present as a ring atom. Any —NH in a heterocyclyl ring may exist protected such as, for example, as an —N(Boc), —N(CBz), —N(Tos) group and the like; such protections are also considered part of this invention. The heterocyclyl can be optionally substituted by one or more “ring system substituents” which may be the same or different, and are as defined herein. The nitrogen or sulfur atom of the heterocyclyl can be optionally oxidized to the corresponding N-oxide, S-oxide or S,S-dioxide. Non-limiting examples of suitable monocyclic heterocyclyl rings include piperidyl, pyrrolidinyl, piperazinyl, morpholinyl, thiomorpholinyl, thiazolidinyl, 1,4-dioxanyl, tetrahydrofuranyl, tetrahydrothiophenyl, lactam, lactone, and the like.


It should be noted that in hetero-atom containing ring systems of this invention, there are no hydroxyl groups on carbon atoms adjacent to a N, O or S, as well as there are no N or S groups on carbon adjacent to another heteroatom. Thus, for example, in the ring:




embedded image



there is no —OH attached directly to carbons marked 2 and 5.


It should also be noted that tautomeric forms such as, for example, the moieties:




embedded image



are considered equivalent in certain embodiments of this invention.


“Alkynylalkyl” means an alkynyl-alkyl- group in which the alkynyl and alkyl are as previously described. Preferred alkynylalkyls contain a lower alkynyl and a lower alkyl group. The bond to the parent moiety is through the alkyl. Non-limiting examples of suitable alkynylalkyl groups include propargylmethyl.


“Heteroaralkyl” means a heteroaryl-alkyl- group in which the heteroaryl and alkyl are as previously described. Preferred heteroaralkyls contain a lower alkyl group. Non-limiting examples of suitable aralkyl groups include pyridylmethyl, and quinolin-3-ylmethyl. The bond to the parent moiety is through the alkyl.


“Hydroxyalkyl” means a HO-alkyl- group in which alkyl is as previously defined. Preferred hydroxyalkyls contain lower alkyl. Non-limiting examples of suitable hydroxyalkyl groups include hydroxymethyl and 2-hydroxyethyl.


“Acyl” means an H—C(O)—, alkyl-C(O)— or cycloalkyl-C(O)—, group in which the various groups are as previously described. The bond to the parent moiety is through the carbonyl. Preferred acyls contain a lower alkyl. Non-limiting examples of suitable acyl groups include formyl, acetyl and propanoyl.


“Aroyl” means an aryl-C(O)— group in which the aryl group is as previously described. The bond to the parent moiety is through the carbonyl. Non-limiting examples of suitable groups include benzoyl and 1-naphthoyl.


“Alkoxy” means an alkyl-O— group in which the alkyl group is as previously described. Non-limiting examples of suitable alkoxy groups include methoxy, ethoxy, n-propoxy, isopropoxy and n-butoxy. The bond to the parent moiety is through the ether oxygen.


“Aryloxy” means an aryl-O— group in which the aryl group is as previously described. Non-limiting examples of suitable aryloxy groups include phenoxy and naphthoxy. The bond to the parent moiety is through the ether oxygen.


“Aralkyloxy” means an aralkyl-O— group in which the aralkyl group is as previously described. Non-limiting examples of suitable aralkyloxy groups include benzyloxy and 1- or 2-naphthalenemethoxy. The bond to the parent moiety is through the ether oxygen.


“Alkylthio” means an alkyl-S— group in which the alkyl group is as previously described. Non-limiting examples of suitable alkylthio groups include methylthio and ethylthio. The bond to the parent moiety is through the sulfur.


“Arylthio” means an aryl-S— group in which the aryl group is as previously described. Non-limiting examples of suitable arylthio groups include phenylthio and naphthylthio. The bond to the parent moiety is through the sulfur.


“Aralkylthio” means an aralkyl-S— group in which the aralkyl group is as previously described. Non-limiting example of a suitable aralkylthio group is benzylthio. The bond to the parent moiety is through the sulfur.


“Alkoxycarbonyl” means an alkyl-O—CO— group. Non-limiting examples of suitable alkoxycarbonyl groups include methoxycarbonyl and ethoxycarbonyl. The bond to the parent moiety is through the carbonyl.


“Aryloxycarbonyl” means an aryl-O—C(O)— group. Non-limiting examples of suitable aryloxycarbonyl groups include phenoxycarbonyl and naphthoxycarbonyl. The bond to the parent moiety is through the carbonyl.


“Aralkoxycarbonyl” means an aralkyl-O—C(O)— group. Non-limiting example of a suitable aralkoxycarbonyl group is benzyloxycarbonyl. The bond to the parent moiety is through the carbonyl.


“Alkylsulfonyl” means an alkyl-S(O2)— group. Preferred groups are those in which the alkyl group is lower alkyl. The bond to the parent moiety is through the sulfonyl.


“Arylsulfonyl” means an aryl-S(O2)— group. The bond to the parent moiety is through the sulfonyl.


The term “substituted” means that one or more hydrogens on the designated atom is replaced with a selection from the indicated group, provided that the designated atom's normal valency under the existing circumstances is not exceeded, and that the substitution results in a stable compound. Combinations of substituents and/or variables are permissible only if such combinations result in stable compounds. By “stable compound” or “stable structure” is meant a compound that is sufficiently robust to survive isolation to a useful degree of purity from a reaction mixture, and formulation into an efficacious therapeutic agent.


The term “one or more” or “at least one”, when indicating the number of substituents, compounds, combination agents and the like, refers to at least one, and up to the maximum number of chemically and physically permissible, substituents, compounds, combination agents and the like, that are present or added, depending on the context. Such techniques and knowledge are well known within the skills of the concerned artisan.


The term “optionally substituted” means optional substitution with the specified groups, radicals or moieties.


The term “isolated” or “in isolated form” for a compound refers to the physical state of said compound after being isolated from a synthetic process or natural source or combination thereof. The term “purified” or “in purified form” for a compound refers to the physical state of said compound after being obtained from a purification process or processes described herein or well known to the skilled artisan, in sufficient purity to be characterizable by standard analytical techniques described herein or well known to the skilled artisan.


It should also be noted that any carbon or heteroatom with unsatisfied valences in the text, schemes, examples and Tables herein is assumed to have the hydrogen atom(s) to satisfy the valences.


When a functional group in a compound is termed “protected”, this means that the group is in modified form to preclude undesired side reactions at the protected site when the compound is subjected to a reaction. Suitable protecting groups will be recognized by those with ordinary skill in the art as well as by reference to standard textbooks such as, for example, T. W. Greene et al, Protective Groups in organic Synthesis (1991), Wiley, New York.


When any variable (e.g., aryl, heterocycle, R2, etc.) occurs more than one time in any constituent or in Formula 1, its definition on each occurrence is independent of its definition at every other occurrence.


As used herein, the term “composition” is intended to encompass a product comprising the specified ingredients in the specified amounts, as well as any product which results, directly or indirectly, from combination of the specified ingredients in the specified amounts.


Prodrugs and solvates of the compounds of the invention are also contemplated herein. The term “prodrug”, as employed herein, denotes a compound that is a drug precursor which, upon administration to a subject, undergoes chemical conversion by metabolic or chemical processes to yield a compound of Formula 1 or a salt and/or solvate thereof. A discussion of prodrugs is provided in T. Higuchi and V. Stella, Pro-drugs as Novel Delivery Systems (1987) 14 of the A.C.S. Symposium Series, and in Bioreversible Carriers in Drug Design, (1987) Edward B. Roche, ed., American Pharmaceutical Association and Pergamon Press, both of which are incorporated herein by reference thereto.


“Solvate” means a physical association of a compound of this invention with one or more solvent molecules. This physical association involves varying degrees of ionic and covalent bonding, including hydrogen bonding. In certain instances the solvate will be capable of isolation, for example when one or more solvent molecules are incorporated in the crystal lattice of the crystalline solid. “Solvate” encompasses both solution-phase and isolatable solvates. Non-limiting examples of suitable solvates include ethanolates, methanolates, and the like. “Hydrate” is a solvate wherein the solvent molecule is H2O.


“Effective amount” or “therapeutically effective amount” is meant to describe an amount of compound or a composition of the present invention effective in inhibiting the CDK(s) and thus producing the desired therapeutic, ameliorative, inhibitory or preventative effect.


The compounds of Formula 1 can form salts which are also within the scope of this invention. Reference to a compound of Formula 1 herein is understood to include reference to salts thereof, unless otherwise indicated. The term “salt(s)”, as employed herein, denotes acidic salts formed with inorganic and/or organic acids, as well as basic salts formed with inorganic and/or organic bases. In addition, when a compound of Formula 1 contains both a basic moiety, such as, but not limited to a pyridine or imidazole, and an acidic moiety, such as, but not limited to a carboxylic acid, zwitterions (“inner salts”) may be formed and are included within the term “salt(s)” as used herein. Pharmaceutically acceptable (i.e., non-toxic, physiologically acceptable) salts are preferred, although other salts are also useful. Salts of the compounds of the Formula 1 may be formed, for example, by reacting a compound of Formula 1 with an amount of acid or base, such as an equivalent amount, in a medium such as one in which the salt precipitates or in an aqueous medium followed by lyophilization.


Exemplary acid addition salts include acetates, ascorbates, benzoates, benzenesulfonates, bisulfates, borates, butyrates, citrates, camphorates, camphorsulfonates, fumarates, hydrochlorides, hydrobromides, hydroiodides, lactates, maleates, methanesulfonates, naphthalenesulfonates, nitrates, oxalates, phosphates, propionates, salicylates, succinates, sulfates, tartarates, thiocyanates, toluenesulfonates (also known as tosylates,) and the like. Additionally, acids which are generally considered suitable for the formation of pharmaceutically useful salts from basic pharmaceutical compounds are discussed, for example, by P. Stahl et al, Camille G. (eds.) Handbook of Pharmaceutical Salts. Properties, Selection and Use. (2002) Zurich: Wiley-VCH; S. Berge et al, Journal of Pharmaceutical Sciences (1977) 66(1) 1-19; P. Gould, International J. of Pharmaceutics (1986) 33 201-217; Anderson et al, The Practice of Medicinal Chemistry (1996), Academic Press, New York; and in The Orange Book (Food & Drug Administration, Washington, D.C. on their website). These disclosures are incorporated herein by reference thereto.


Exemplary basic salts include ammonium salts, alkali metal salts such as sodium, lithium, and potassium salts, alkaline earth metal salts such as calcium and magnesium salts, salts with organic bases (for example, organic amines) such as dicyclohexylamines, t-butyl amines, and salts with amino acids such as arginine, lysine and the like. Basic nitrogen-containing groups may be quarternized with agents such as lower alkyl halides (e.g. methyl, ethyl, and butyl chlorides, bromides and iodides), dialkyl sulfates (e.g. dimethyl, diethyl, and dibutyl sulfates), long chain halides (e.g. decyl, lauryl, and stearyl chlorides, bromides and iodides), aralkyl halides (e.g. benzyl and phenethyl bromides), and others.


All such acid salts and base salts are intended to be pharmaceutically acceptable salts within the scope of the invention and all acid and base salts are considered equivalent to the free forms of the corresponding compounds for purposes of the invention.


Pharmaceutically acceptable esters of the present compounds include the following groups: (1) carboxylic acid esters obtained by esterification of the hydroxy groups, in which the non-carbonyl moiety of the carboxylic acid portion of the ester grouping is selected from straight or branched chain alkyl (for example, acetyl, n-propyl, t-butyl, or n-butyl), alkoxyalkyl (for example, methoxymethyl), aralkyl (for example, benzyl), aryloxyalkyl (for example, phenoxymethyl), aryl (for example, phenyl optionally substituted with, for example, halogen, C1-4alkyl, or C1-4alkoxy or amino); (2) sulfonate esters, such as alkyl- or aralkylsulfonyl (for example, methanesulfonyl); (3) amino acid esters (for example, L-valyl or L-isoleucyl); (4) phosphonate esters and (5) mono-, di- or triphosphate esters. The phosphate esters may be further esterified by, for example, a C1-20 alcohol or reactive derivative thereof, or by a 2,3-di(C6-24)acyl glycerol.


Compounds of Formula 1, and salts, solvates, esters and prodrugs thereof, may exist in their tautomeric form (for example, as an amide or imino ether). All such tautomeric forms are contemplated herein as part of the present invention.


All stereoisomers (for example, geometric isomers, optical isomers and the like) of the present compounds (including those of the salts, solvates, esters and prodrugs of the compounds as well as the salts and solvates of the prodrugs), such as those which may exist due to asymmetric carbons on various substituents, including enantiomeric forms (which may exist even in the absence of asymmetric carbons), rotameric forms, atropisomers, and diastereomeric forms, are contemplated within the scope of this invention, as are positional isomers (such as, for example, 4-pyridyl and 3-pyridyl). Individual stereoisomers of the compounds of the invention may, for example, be substantially free of other isomers, or may be admixed, for example, as racemates or with all other, or other selected, stereoisomers. The chiral centers of the present invention can have the S or R configuration as defined by the IUPAC 1974 Recommendations. The use of the terms “salt”, “solvate” “prodrug” and the like, is intended to equally apply to the salt, solvate and prod rug of enantiomers, stereoisomers, rotamers, tautomers, positional isomers, racemates or prodrugs of the inventive compounds.


Polymorphic forms of the compounds of Formula I, and of the salts, solvates, esters and prodrugs of the compounds of Formula I, are intended to be included in the present invention.


It is to be understood that the utility of the compounds of Formula 1 for the therapeutic applications discussed herein is applicable to each compound by itself or to the combination or combinations of one or more compounds of Formula 1 as illustrated, for example, in the next immediate paragraph. The same understanding also applies to pharmaceutical composition(s) comprising such compound or compounds and method(s) of treatment involving such compound or compounds.


The compounds according to the invention can have pharmacological properties; in particular, the compounds of Formula 1 can be inhibitors of HCV protease, each compound by itself or one or more compounds of Formula 1 can be combined with one or more compounds selected from within Formula 1. The compound(s) can be useful for treating diseases such as, for example, HCV, HIV, (AIDS, Acquired Immune Deficiency Syndrome), and related disorders, as well as for modulating the activity of hepatitis C virus (HCV) protease, preventing HCV, or ameliorating one or more symptoms of hepatitis C.


The compounds of Formula 1 may be used for the manufacture of a medicament to treat disorders associated with the HCV protease, for example, the method comprising bringing into intimate contact a compound of Formula 1 and a pharmaceutically acceptable carrier.


In another embodiment, this invention provides pharmaceutical compositions comprising the inventive compound or compounds as an active ingredient. The pharmaceutical compositions generally additionally comprise at least one pharmaceutically acceptable carrier diluent, excipient or carrier (collectively referred to herein as carrier materials). Because of their HCV inhibitory activity, such pharmaceutical compositions possess utility in treating hepatitis C and related disorders.


In yet another embodiment, the present invention discloses methods for preparing pharmaceutical compositions comprising the inventive compounds as an active ingredient. In the pharmaceutical compositions and methods of the present invention, the active ingredients will typically be administered in admixture with suitable carrier materials suitably selected with respect to the intended form of administration, i.e. oral tablets, capsules (either solid-filled, semi-solid filled or liquid filled), powders for constitution, oral gels, elixirs, dispersible granules, syrups, suspensions, and the like, and consistent with conventional pharmaceutical practices. For example, for oral administration in the form of tablets or capsules, the active drug component may be combined with any oral non-toxic pharmaceutically acceptable inert carrier, such as lactose, starch, sucrose, cellulose, magnesium stearate, dicalcium phosphate, calcium sulfate, talc, mannitol, ethyl alcohol (liquid forms) and the like. Moreover, when desired or needed, suitable binders, lubricants, disintegrating agents and coloring agents may also be incorporated in the mixture. Powders and tablets may be comprised of from about 5 to about 95 percent inventive composition.


Suitable binders include starch, gelatin, natural sugars, corn sweeteners, natural and synthetic gums such as acacia, sodium alginate, carboxymethylcellulose, polyethylene glycol and waxes. Among the lubricants there may be mentioned for use in these dosage forms, boric acid, sodium benzoate, sodium acetate, sodium chloride, and the like. Disintegrants include starch, methylcellulose, guar gum and the like.


Sweetening and flavoring agents and preservatives may also be included where appropriate. Some of the terms noted above, namely disintegrants, diluents, lubricants, binders and the like, are discussed in more detail below.


Additionally, the compositions of the present invention may be formulated in sustained release form to provide the rate controlled release of any one or more of the components or active ingredients to optimize the therapeutic effects, i.e. HCV inhibitory activity and the like. Suitable dosage forms for sustained release include layered tablets containing layers of varying disintegration rates or controlled release polymeric matrices impregnated with the active components and shaped in tablet form or capsules containing such impregnated or encapsulated porous polymeric matrices.


Liquid form preparations include solutions, suspensions and emulsions. As an example may be mentioned water or water-propylene glycol solutions for parenteral injections or addition of sweeteners and pacifiers for oral solutions, suspensions and emulsions. Liquid form preparations may also include solutions for intranasal administration.


Aerosol preparations suitable for inhalation may include solutions and solids in powder form, which may be in combination with a pharmaceutically acceptable carrier such as inert compressed gas, e.g. nitrogen.


For preparing suppositories, a low melting wax such as a mixture of fatty acid glycerides such as cocoa butter is first melted, and the active ingredient is dispersed homogeneously therein by stirring or similar mixing. The molten homogeneous mixture is then poured into convenient sized molds, allowed to cool and thereby solidify.


Also included are solid form preparations which are intended to be converted, shortly before use, to liquid form preparations for either oral or parenteral administration. Such liquid forms include solutions, suspensions and emulsions.


The compounds of the invention may also be deliverable transdermally. The transdermal compositions may take the form of creams, lotions, aerosols and/or emulsions and can be included in a transdermal patch of the matrix or reservoir type as are conventional in the art for this purpose.


The compounds of the invention may also be administered orally, intravenously, intranasally or subcutaneously.


The compounds of the invention may also comprise preparations which are in a unit dosage form. In such form, the preparation is subdivided into suitably sized unit doses containing appropriate quantities of the active components, e.g., an effective amount to achieve the desired purpose.


The quantity of the inventive active composition in a unit dose of preparation may be generally varied or adjusted from about 1.0 milligram to about 1,000 milligrams, preferably from about 1.0 to about 950 milligrams, more preferably from about 1.0 to about 500 milligrams, and typically from about 1 to about 250 milligrams, according to the particular application. The actual dosage employed may be varied depending upon the patient's age, sex, weight and severity of the condition being treated. Such techniques are well known to those skilled in the art.


Generally, the human oral dosage form containing the active ingredients can be administered 1 or 2 times per day. The amount and frequency of the administration will be regulated according to the judgment of the attending clinician. A generally recommended daily dosage regimen for oral administration may range from about 1.0 milligram to about 1,000 milligrams per day, in single or divided doses.


Some useful terms are described below:


Capsule—refers to a special container or enclosure made of methyl cellulose, polyvinyl alcohols, or denatured gelatins or starch for holding or containing compositions comprising the active ingredients. Hard shell capsules are typically made of blends of relatively high gel strength bone and pork skin gelatins. The capsule itself may contain small amounts of dyes, opaquing agents, plasticizers and preservatives.


Tablet—refers to a compressed or molded solid dosage form containing the active ingredients with suitable diluents. The tablet can be prepared by compression of mixtures or granulations obtained by wet granulation, dry granulation or by compaction.


Oral gel—refers to the active ingredients dispersed or solubilized in a hydrophillic semi-solid matrix.


Powder for constitution refers to powder blends containing the active ingredients and suitable diluents which can be suspended in water or juices.


Diluent—refers to substances that usually make up the major portion of the composition or dosage form. Suitable diluents include sugars such as lactose, sucrose, mannitol and sorbitol; starches derived from wheat, corn, rice and potato; and celluloses such as microcrystalline cellulose. The amount of diluent in the composition can range from about 10 to about 90% by weight of the total composition, preferably from about 25 to about 75%, more preferably from about 30 to about 60% by weight, even more preferably from about 12 to about 60%.


Disintegrant—refers to materials added to the composition to help it break apart (disintegrate) and release the medicaments. Suitable disintegrants include starches; “cold water soluble” modified starches such as sodium carboxymethyl starch; natural and synthetic gums such as locust bean, karaya, guar, tragacanth and agar; cellulose derivatives such as methylcellulose and sodium carboxymethylcellulose; microcrystalline celluloses and cross-linked microcrystalline celluloses such as sodium croscarmellose; alginates such as alginic acid and sodium alginate; clays such as bentonites; and effervescent mixtures. The amount of disintegrant in the composition can range from about 2 to about 15% by weight of the composition, more preferably from about 4 to about 10% by weight.


Binder—refers to substances that bind or “glue” powders together and make them cohesive by forming granules, thus serving as the “adhesive” in the formulation. Binders add cohesive strength already available in the diluent or bulking agent. Suitable binders include sugars such as sucrose; starches derived from wheat, corn rice and potato; natural gums such as acacia, gelatin and tragacanth; derivatives of seaweed such as alginic acid, sodium alginate and ammonium calcium alginate; cellulosic materials such as methylcellulose and sodium carboxymethylcellulose and hydroxypropylmethylcellulose; polyvinylpyrrolidone; and inorganics such as magnesium aluminum silicate. The amount of binder in the composition can range from about 2 to about 20% by weight of the composition, more preferably from about 3 to about 10% by weight, even more preferably from about 3 to about 6% by weight.


Lubricant—refers to a substance added to the dosage form to enable the tablet, granules, etc. after it has been compressed, to release from the mold or die by reducing friction or wear. Suitable lubricants include metallic stearates such as magnesium stearate, calcium stearate or potassium stearate; stearic acid; high melting point waxes; and water soluble lubricants such as sodium chloride, sodium benzoate, sodium acetate, sodium oleate, polyethylene glycols and d'l-leucine. Lubricants are usually added at the very last step before compression, since they must be present on the surfaces of the granules and in between them and the parts of the tablet press. The amount of lubricant in the composition can range from about 0.2 to about 5% by weight of the composition, preferably from about 0.5 to about 2%, more preferably from about 0.3 to about 1.5% by weight.


Glident—material that prevents caking and improve the flow characteristics of granulations, so that flow is smooth and uniform. Suitable glidents include silicon dioxide and talc. The amount of glident in the composition can range from about 0.1% to about 5% by weight of the total composition, preferably from about 0.5 to about 2% by weight.


Coloring agents—excipients that provide coloration to the composition or the dosage form. Such excipients can include food grade dyes and food grade dyes adsorbed onto a suitable adsorbent such as clay or aluminum oxide. The amount of the coloring agent can vary from about 0.1 to about 5% by weight of the composition, preferably from about 0.1 to about 1%.


Bioavailability—refers to the rate and extent to which the active drug ingredient or therapeutic moiety is absorbed into the systemic circulation from an administered dosage form as compared to a standard or control.


Conventional methods for preparing tablets are known. Such methods include dry methods such as direct compression and compression of granulation produced by compaction, or wet methods or other special procedures. Conventional methods for making other forms for administration such as, for example, capsules, suppositories and the like are also well known.


Another embodiment of the invention discloses the use of the inventive compounds or pharmaceutical compositions disclosed above for treatment of diseases such as, for example, hepatitis C and the like. The method comprises administering a therapeutically effective amount of the inventive compound or pharmaceutical composition to a patient having such a disease or diseases and in need of such a treatment.


In yet another embodiment, the compounds of the invention may be used for the treatment of HCV in humans in monotherapy mode or in a combination therapy (e.g., dual combination, triple combination etc.) mode such as, for example, in combination with antiviral and/or immunomodulatory agents. Examples of such antiviral and/or immunomodulatory agents include Ribavirin (from Schering-Plough Corporation, Madison, N.J.) and Levovirin™ (from ICN Pharmaceuticals, Costa Mesa, Calif.), VP 50406™ (from Viropharma, Incorporated, Exton, Pa.), ISIS 14803™ (from ISIS Pharmaceuticals, Carlsbad, Calif.), Heptazyme™ (from Ribozyme Pharmaceuticals, Boulder, Colo.), VX 497™ (from Vertex Pharmaceuticals, Cambridge, Mass.), Thymosin™ (from SciClone Pharmaceuticals, San Mateo, Calif.), Maxamine™ (Maxim Pharmaceuticals, San Diego, Calif.), mycophenolate mofetil (from Hoffman-LaRoche, Nutley, N.J.), interferon (such as, for example, interferon-alpha, PEG-interferon alpha conjugates) and the like. “PEG-interferon alpha conjugates” are interferon alpha molecules covalently attached to a PEG molecule. Illustrative PEG-interferon alpha conjugates include interferon alpha-2a (Roferon™, from Hoffman La-Roche, Nutley, N.J.) in the form of pegylated interferon alpha-2a (e.g., as sold under the trade name PegaSys™), interferon alpha-2b (Intron™, from Schering-Plough Corporation) in the form of pegylated interferon alpha-2b (e.g., as sold under the trade name PEG-Intron™), interferon alpha-2c (Berofor Alpha™, from Boehringer Ingelheim, Ingelheim, Germany) or consensus interferon as defined by determination of a consensus sequence of naturally occurring interferon alphas (Infergen™, from Amgen, Thousand Oaks, Calif.).


As stated earlier, the invention includes tautomers, rotamers, enantiomers and other stereoisomers of the inventive compounds also. Thus, as one skilled in the art appreciates, some of the inventive compounds may exist in suitable isomeric forms. Such variations are contemplated to be within the scope of the invention.


Another embodiment of the invention discloses a method of making the compounds disclosed herein. The compounds may be prepared by several techniques known in the art. Illustrative procedures are outlined in the following reaction schemes. The illustrations should not be construed to limit the scope of the invention which is defined in the appended claims. Alternative mechanistic pathways and analogous structures will be apparent to those skilled in the art.


It is to be understood that while the following illustrative schemes describe the preparation of a few representative inventive compounds, suitable substitution of any of both the natural and unnatural amino acids will result in the formation of the desired compounds based on such substitution. Such variations are contemplated to be within the scope of the invention.


For the procedures described below, the following abbreviations are used:


Abbreviations

Abbreviations which are used in the descriptions of the schemes, preparations and the examples that follow are:

  • THF: Tetrahydrofuran
  • DMF: N,N-Dimethylformamide
  • EtOAc: Ethyl acetate
  • AcOH: Acetic acid
  • HOOBt: 3-Hydroxy-1,2,3-benzotriazin-4(3H)-one
  • EDCl: 1-(3-dimethylaminopropyl)-3-ethylcarbodiimide hydrochloride
  • NMM: N-Methylmorpholine
  • ADDP: 1,1′-(Azodicarbobyl)dipiperidine
  • DEAD: Diethylazodicarboxylate
  • DIAD: Diisopropylazodicarboxylate
  • MeOH: Methanol
  • EtOH: Ethanol
  • Et2O: Diethyl ether
  • DMSO: Dimethylsulfoxide
  • HOBt: N-Hydroxybenzotriazole
  • PyBrOP: Bromo-tris-pyrrolidinophosphonium hexafluorophosphate
  • DCM: Dichloromethane
  • DCC: 1,3-Dicyclohexylcarbodiimide
  • TEMPO: 2,2,6,6-Tetramethyl-1-piperidinyloxy
  • Phg: Phenylglycine
  • Chg: Cyclohexylglycine
  • Bn: Benzyl
  • Bz: Benzyl
  • Et: Ethyl
  • Ph: Phenyl
  • iBoc: isobutoxycarbonyl
  • iPr: isopropyl
  • tBu or But: tert-Butyl
  • Boc: tert-Butyloxycarbonyl
  • Cbz: Benzyloxycarbonyl
  • Cp: Cylcopentyldienyl
  • Ts: p-toluenesulfonyl
  • Me: Methyl
  • Ms or Mesyl: Methane sulfonyl
  • HATU: O-(7-azabenzotriazol-1-yl)-1,1,3,3-tetramethyluronium hexafluorophosphate
  • DMAP: 4-N,N-Dimethylaminopyridine
  • Bop: Benzotriazol-1-yl-oxy-tris(dimethylamino)hexafluorophosphate
  • PCC: Pyridiniumchlorochromate
  • DIBAL-H: diisopropyl aluminum hydride
  • rt or RT: Room temperature
  • quant.: Quantitative yield
  • h or hr: hour
  • min: minute
  • TFA: Trifluoroacetic acid


General Schemes for Preparation of Target Compounds

Compounds of the present invention were synthesized using the general schemes (Methods A-E) described below.


Method A:


Deprotection of the N-Boc functionality of 1.01 under acidic conditions provided the hydrochloride salt 1.02 which was subsequently coupled with N-Boc-tert-leucine under peptide coupling methodology to afford 1.03. N-Boc deprotection followed by treatment with appropriate isocyanate gave the urea 1.05. Hydrolysis of the methyl ester provided the acid 1.06. Peptide coupling of the acid 1.06 with the appropriate P1-P′ primary amide moiety afforded the hydroxyl amide 1.07. Oxidation (Moffatt or related process—T. T. Tidwell, Synthesis, 1990, 857; or Dess-Martin's periodinane (J. Org. Chem., 1983, 48, 4155) resulted in the target compound 1.08.




embedded image


embedded image



Method B


Peptide coupling of the acid 1.06 with the appropriate P1-P′ secondary amide moiety afforded the hydroxyl amide 1.09. Oxidation (Moffatt or Dess-Martin's) resulted in the target compound 1.10.




embedded image



Method C


In another variation, peptide coupling of the N-Boc-P2-P3-acid 1.17 with the appropriate P1-P′ amide moiety afforded the hydroxyl amide 1.11. Oxidation (Moffatt or Dess-Martin's) resulted in the keto amide 1.12. Deprotection of the N-Boc functionality gave the hydrochloride salt 1.13. Treatment with a suitable isocyanate (or isocyanate equivalent) resulted in the target compound 1.14.




embedded image



Method D


In yet another variation, the hydrochloride salt 1.13 was converted to the 4-nitrophenyl carbamate 1.15 by reaction with 4-nitrophenyl chloroformate. Subsequent treatment with an amine (or amine hydrochloride salt) of choice provided the target compound 1.14.




embedded image



Method E


In yet another variation, the dipeptide hydrochloride salt 1.03 was converted to the 4-nitrophenyl carbamate as described above. Treatment with an amine (or amine hydrochloride salt) of choice provided the urea derivative 1.05. Hydrolysis and further elaboration as described in Methods A/B provided the target compounds 1.14.




embedded image


Preparation of Intermediates

Preparation of Intermediates 10.11 and 10.12:


Step 1:




embedded image


A stirred solution of ketimine 10.01 (50 g, 187.1 mmol) under N2 in dry THF (400 mL) was cooled to −78° C. and treated with 1 M solution of K-tBuO (220 mL, 1.15 equiv.) in THF. The reaction mixture was warmed to 0° C. and stirred for 1 h and treated with bromomethyl cyclobutane (28 mL, 249 mmol). The reaction mixture was stirred at room temperature for 48 h and concentrated in vacuo. The residue was dissolved in Et2O (300 mL) and treated with aq. HCl (2 M, 300 mL) The resulting solution was stirred at room temperature for 5 h and extracted with Et2O (1 L). The aqueous layer was made basic to pH ˜12-14 with NaOH (50% aq.) and extracted with CH2Cl2 (3×300 mL). The combined organic layers were dried (MgSO4), filtered, and concentrated to give the pure amine (10.02, 18 g) as a colorless oil.


Step 2




embedded image


A solution of the amine 10.02 (18 g, 105.2 mmol) at 0° C. in CH2Cl2 (350 mL) was treated with di-tert-butyldicarbonate (23 g, 105.4 mmol) and stirred at rt. for 12 h. After the completion of the reaction (TLC), the reaction mixture was concentrated in vacuo and the residue was dissolved in THF/H2O (200 ml, 1:1) and treated with LiOH.H2O (6.5 g, 158.5 mmol) and stirred at room temperature for 3 h. The reaction mixture was concentrated and the basic aqueous layer was extracted with Et2O. The aqueous layer was acidified with conc. HCl to pH˜1-2 and extracted with CH2Cl2. The combined organic layers were dried (MgSO4), filtered, and concentrated in vacuo to yield 10.03 as a colorless viscous oil which was used for the next step without any further purification.


Step 3




embedded image


A solution of the acid 10.03 (15.0 g, 62 mmol) in CH2Cl2 (250 mL) was treated with BOP reagent (41.1 g, 93 mmol), N-methyl morpholine (27 mL), N,O-dimethyl hydroxylamine hydrochloride (9.07 g, 93 mmol) and stirred overnight at rt. The reaction mixture was diluted with 1 N aq. HCl (250 mL), and the layers were separated and the aqueous layer was extracted with CH2Cl2 (3×300 ml). The combined organic layers were dried (MgSO4), filtered and concentrated in vacuo and purified by chromatography (SiO2, EtOAc/Hex 2:3) to yield the amide 10.04 (15.0 g) as a colorless solid.


Step 4




embedded image


A solution of the amide 10.04 (15 g, 52.1 mmol) in dry THF (200 mL) was treated dropwise with a solution of LiAlH4 (1M, 93 mL, 93 mmol) at 0° C. The reaction mixture was stirred at room temperature for 1 h and carefully quenched at 0° C. with a solution of KHSO4 (10% aq.) and stirred for 0.5 h. The reaction mixture was diluted with aq. HCl (1 M, 150 mL) and extracted with CH2Cl2 (3×200 mL), The combined organic layers were washed with aq. HCl (1 M), saturated NaHCO3, brine, and dried (MgSO4). The mixture was filtered and concentrated in vacuo to yield 10.05 as a viscous colorless oil (14 g).


Step 5




embedded image


A solution of the aldehyde 10.05 (14 g, 61.6 mmol) in CH2Cl2 (50 mL), was treated with Et3N (10.73 mL, 74.4 mmol), and acetone cyanohydrin (10.86 g, 127.57 mmol) and stirred at room temperature for 24 hrs. The reaction mixture was concentrated in vacuo and diluted with aq. HCl (1 M, 200 mL) and extracted into CH2Cl2 (3×200 mL). The combined organic layer were washed with H2O, brine, dried (MgSO4), filtered, concentrated in vacuo and purified by chromatography (SiO2, EtOAc/Hex 1:4) to yield 10.06 (10.3 g) as a colorless liquid


Step 6




embedded image


Methanol saturated with HCl*, prepared by bubbling HCl gas through CH3OH (700 ml) at 0° C., was treated with the cyanohydrin 10.06 and heated to reflux for 24 h. The reaction was concentrated in vacuo to yield 10.07, which was used in the next step without purification. *Alternatively 6M HCl prepared by addition of AcCl to dry methanol can also be used.


Step 7




embedded image


A solution of the amine hydrochloride 10.07 in CH2Cl2 (200 mL) was treated with Et3N (45.0 mL, 315 mmol) and Boc2O (45.7 g, 209 mmol) at −78° C. The reaction mixture was then stirred at room temperature overnight and diluted with HCl (2 M, 200 mL) and extracted into CH2Cl2. The combined organic layer were dried (MgSO4) filtered, concentrated in vacuo and purified by chromatography (EtOAc/Hex 1:4) to yield hydroxy ester 10.08.


Step 8.




embedded image


A solution of methyl ester 10.08 (3 g, 10.5 mmol) in THF/H2O (1:1) was treated with LiOH.H2O (645 mg, 15.75 mmol) and stirred at rt. for 2 h. The reaction mixture was acidified with aq HCl (1 M, 15 mL) and concentrated in vacuo. The residue was dried in vacuum to afford 10.09 in quantitative yield.


Step 9




embedded image


A solution of the acid 10.09 (from above) in CH2Cl2 (50 mL) and DMF (25 mL) was treated with NH4Cl (2.94 g, 55.5 mmol), EDCl (3.15 g, 16.5 mmol), HOOBt (2.69 g, 16.5 mmol), and NMM (4.4 g, 44 mmol). The reaction mixture was stirred at room temperature for 3 d. The solvents were removed under vacuo and the residue was diluted with aq. HCl (250 mL) and extracted with CH2Cl2. The combined organic layers were washed with aq. Sat'd. NaHCO3, dried (MgSO4) filtered concentrated in vacuo to obtain 10.10, which was used as it was in the following steps. (Alternatively 10.10 can also be obtained directly by the reaction of 10.06 (4.5 g, 17.7 mmol) with aq. H2O2 (10 mL), LiOH.H2O (820 mg, 20.8 mmol) at 0° C. in 50 mL of CH3OH for 0.5 h.)


Step 10




embedded image


A solution of 10.10 obtained in the previous step was dissolved in 4 N HCl in dioxane and stirred at rt. for 2 h. The reaction mixture was concentrated in vacuo to give the intermediate 10.11 as a solid, which was used without further purification.


Step 11




embedded image


The required intermediate 10.12 was obtained from compound 10.09 using essentially the procedures described above in Steps 9, 10 with appropriate reagents.


Preparation of Intermediate 11.01


Step 1




embedded image


To a solution of 4-pentyn-1-ol, 11.02 (4.15 g; Aldrich) was added Dess-Martin Periodinane (30.25 g; Aldrich) and the resulting mixture was stirred for 45 min. before the addition of (tert-Butoxycarbonylmethylene)triphenylphosphorane (26.75 g; Aldrich). The resulting dark reaction was stirred overnight, diluted with EtOAc), washed with aq. sodium sulfite. sat. aq. NaHCO3, water, brine and dried. The volatiles were removed under reduced pressure and the residue was purified by silica gel column chromatography using 1% EtOAc in hexanes as eluent to give the desired compound, 11.03 (3.92 g). Some impure fractions were also obtained but set aside at this time.


Step 2




embedded image


Using the alkene 11.03 (1.9 g) in n-propanol (20 ml; Aldrich)), benzyl carbamate (4.95 g; Aldrich) in n-propanol (40 ml), NaOH (1.29 g) in water (79 ml), tert-butyl hypochlorite (3.7 ml), (DHQ)2PHAL (0.423 g; Aldrich)) in n-propanol (37.5 ml), and potassium osmate:dehydrate (0.1544 g; Aldrich) and the procedure set forth in Angew. Chem. Int. Ed. Engl (1998), 35, (23/24), pp. 2813-7. gave a crude product which was purified by silica gel column chromatography using EtOAc:Hexanes (1:5) to give the desired amino alcohol 11.04 (1.37 g, 37%) as a white solid.


Step 3




embedded image


To the ester 11.04 (0.700 g) was added 4M HCl in dioxane (20 ml; Aldrich) and the resulting mixture was allowed to stand at room temperature overnight. The volatiles were removed under reduced pressure to give the acid 11.05 (0.621 g) as a white solid.


Step 4




embedded image


BOP reagent (3.65 g; Sigma) followed by triethylamine (3.45 ml) were added to a dichloromethane (20 ml) solution of the carboxylic acid 11.05 (2.00 g) and allyl amine (0.616 ml) at room temperature and the resulting mixture was stirred overnight. The reaction mixture was partitioned between EtOAc and 10% aq. HCl. The organic phase was separated, washed with sat. aq. sodium bicarbonate, water, dried (magnesium sulfate). The crude reaction product was purified by silica gel column chromatography using (EtOAc:Hexanes; 70:30) as eluent to provide the desired amide 11.01 (1.73 g) as a viscous yellow oil.


Preparation of Intermediates 12.03 and 12.04


Step 1




embedded image


Compound 12.01 was converted to the required material 12.02 using essentially the procedures described for Intermediate 10.11, Steps 3-8.


Step 2




embedded image


Compound 12.02 was converted to the required intermediate 12.03 using essentially the procedures described for Intermediate 10.11, Steps 9, 10.


Step 3




embedded image


Compound 12.02 was converted to the required intermediate 12.03 using essentially the procedures described for Intermediate 10.12, Step 11.


Preparation of Intermediate 13.01


Step 1




embedded image


To a stirred solution of 1-nitrobutane, 13.02 (16.5 g, 0.16 mol) and glyoxylic acid in H2O (28.1 g, 0.305 mol) and MeOH (122 mL) at 0° C.-5° C., was added dropwise triethylamine (93 mL, 0.667 mol) over 2 hrs. The solution was warmed to room temperature, stirred overnight and concentrated to dryness to give an oil. The oil was then dissolved in H2O and acidified to pH=1 with 10% HCl, followed by extraction with EtOAc. The combined organic solution was washed with brine, dried over Na2SO4, filtered and concentrated to dryness to give the product 13.03 (28.1 g, 99% yield).


Step 2




embedded image


To a stirred solution of compound 13.03 (240 g, 1.35 mol) in acetic acid (1.25 L) was added 10% Pd/C (37 g). The resulting solution was hydrogenated at 59 psi for 3 hrs and then at 60 psi overnight. The acetic acid was then evaporated and azeotroped 3 times with toluene, then triturated with MeOH and ether. The solution was then filtered and azeotroped twice with toluene to afford 13.04 as an off white solid (131 g, 0.891 mol, 66%).


Step 3




embedded image


To a stirred solution of the amino acid 13.04 (2.0 g, 13.6 mmol) in dioxane (10 mL) and H2O (5 mL) at 0° C., was added 1N NaOH solution (4.3 mL, 14.0 mmol). The resulting solution was stirred for 10 minutes, followed by addition of di-t-butyidicarbonate (0.110 g, 14.0 mmol) and stirred at 0° C. for 15 minutes. The solution was then warmed to room temperature, stirred for 45 minutes and kept at refrigerator overnight and concentrated to dryness to give a crude material. To the solution of this crude material in EtOAc (100 mL) and ice, was added KHSO4 (3.36 g) and H2O (32 mL) and stirred for 4-6 minutes. The organic layer was then separated and the aqueous layer was extracted twice with EtOAc and the combined organic layer was washed with water, brine, dried over Na2SO4, filtered and concentrated to dryness to give the product 13.05 as a clear gum (3.0 g, 89% yield).


Step 4




embedded image


Compound 13.05 was converted to the required intermediate 13.01 using essentially the procedures described for Intermediate 10.12, Step 11.


Preparation of Intermediate 14.01


Step 1




embedded image


Compound 14.02 was converted to the required material 14.03 using essentially the procedures described for Intermediate 13.01, Steps 1-3.


Step 2




embedded image


Compound 14.03 was converted to the required intermediate 14.01 using essentially the procedures described for Intermediate 10.12, Step 11.


Preparation of Intermediate 15.01


Step 1




embedded image


To a suspension of silver nitrite (9 g, 58.5 mmol) in diethyl ether (25 mL) at 0° C. was added a solution of 4-iodo-1,1,1-trifluorobutane, 15.02 (10 g, 42.0 mmol) in diethyl ether (25 mL) slowly through an addition funnel (approx. 15 min). The resulting mixture was vigorously stirred at 0° C. and warmed to rt. After 50 h, the solid material was filtered off through a celite pad. The resulting diethyl ether solution was concentrated in vacuo to give 15.03 as colorless oil, which was used without further purification.


Step 2




embedded image


Compound 15.03 was converted to the required material 15.04 using essentially the procedures described for Intermediate 13.01, Steps 1-3.


Step 3




embedded image


Compound 15.04 was converted to the required intermediate 15.01 using essentially the procedures described for Intermediate 10.12, Step 11.


Preparation of Intermediate 16.01




embedded image


The acid 16.02 (Winkler, D.; Burger, K., Synthesis, 1996, 1419) is processed as described above (preparation of Intermediate 10.12) to give the expected intermediate 16.01.


Preparation of Intermediate 20.01




embedded image


The amino ester 20.01 was prepared following the method of R. Zhang and J. S. Madalengoitia (J. Org. Chem. 1999, 64, 330), with the exception that the Boc group was cleaved by the reaction of the Boc-protected amino acid with methanolic HCl (4M HCl in dioxane was also employed for the deprotection). In a variation of the reported synthesis, the sulfonium ylide was replaced with the corresponding phosphonium ylide.


Preparation of Intermediate 20.04


Step 1




embedded image


A solution of commercial amino acid Boc-Chg-OH, 20.02 (Senn chemicals, 6.64 g, 24.1 mmol) and amine hydrochloride 20.01 (4.5 g, 22 mmol) in CH2Cl2 (100 mL) at 0° C. was treated with BOP reagent and stirred at rt. for 15 h. The reaction mixture was concentrated in vacuo, then it was diluted with aq. 1 M HCl and extracted into EtOAc (3×200 mL). The combined organic layers were washed with sat'd. NaHCO3 (200 mL), dried (MgSO4), filtered and concentrated in vacuo, and chromatographed (SiO2, EtOAc/Hex 3:7) to obtain 20.03 (6.0 g) as a colorless solid.


Step 2




embedded image


A solution of methyl ester 20.03 (4.0 g, 9.79 mmol) in THF/H2O (1:1) was treated with LiOH.H2O (401 mg, 9.79 mmol) and stirred at rt. for 3 h. The reaction mixture was acidified with aq. HCl and concentrated in vacuo to obtain the required intermediate, free acid 20.04.


Preparation of Intermediate 20.08


Step 1




embedded image


A solution of Boc-tert-Leu 20.05 (Fluka, 5.0 g 21.6 mmol) in dry CH2Cl2/DMF (50 mL, 1:1 ) was cooled to 0° C. and treated with the amine salt 20.01 (5.3 g, 25.7 mmol), NMM (6.5 g, 64.8 mmol) and BOP reagent (11.6 g, 25.7 mmol). The reaction was stirred at rt. for 24 h, diluted with aq. HCl (1 M) and extracted with CH2Cl2. The combined organic layers were washed with HCl (aq, 1 M), sat'd. NaHCO3, brine, dried (MgSO4), filtered and concentrated in vacuo and purified by chromatography (SiO2, Acetone/Hexane 1:5) to yield 20.06 as a colorless solid.


Step 2




embedded image


A solution of methyl ester 20.06 (4.0 g, 10.46 mmol) was dissolved in 4M HCl in dioxane and stirred at rt. for 3 h. The reaction mixture was concentrated in vacuo to obtain the amine hydrochloride salt, 20.07 which was used without purification.


Step 3




embedded image


A solution of the amine salt 20.07 (840 mg, 2.64 mmol) in THF (14 mL)/acetonitrile (2 mL) was cooled to 0° C. 4-Nitrophenylchloroformate (800 mg, 3.96 mmol) was added followed by pyridine (0.64 mL, 7.92 mmol). The reaction was slowly warmed to room temperature over 3 hrs when TLC indicated reaction completion. Diethyl ether (50 mL) was added and the resulting precipitate was filtered off. The filtrate was washed with saturated ammonium chloride solution (1×), brine (1×), dried (Na2SO4) and concentrated. The residue was purified by flash chromatography using 20/80 EtOAc/hexanes which afforded 1.15 g of the required intermediate 20.08.


Preparation of Intermediate 21.01


Step 1




embedded image


To a stirred solution of N-Boc-3,4-dehydroproline 21.02 (5.0 g, 23.5 mmol), di-tert-butyl dicarbonate (7.5 g, 34.4 mmol), and 4-N,N-dimethylaminopyridine (0.40 g, 3.33 mmol) in acetonitrile (100 mL) at room temperature was added triethylamine (5.0 mL, 35.6 mmol). The resulting solution was stirred at this temperature for 18 h before it was concentrated in vacuo. The dark brown residue was purified by flash column chromatography eluting with 10-25% EtOAc/hexane to give the product 21.03 as a pale yellow oil (5.29 g, 84%).


Step 2




embedded image


To a stirred solution of the dehydroproline derivative 21.03 (10.1 g, 37.4 mmol), benzyltriethylammonium chloride (1.60 g, 7.02 mmol) in chloroform (120 mL) at room temperature was added 50% aqueous sodium hydroxide (120 g). After vigorously stirred at this temperature for 24 h, the dark mixture was diluted with CH2Cl2 (200 mL) and diethyl ether (600 mL). After the layers were separated, the aqueous solution was extracted with CH2Cl2/Et2O (1:2, 3×600 mL). The organic solution was dried (MgSO4) and concentrated. The residue was purified by flash column chromatography using 5-20% EtOAc/hexane to afford 9.34 g (71%) of 21.04 as an off-white solid.


Step 3




embedded image


The solution of 21.04 (9.34 g, 26.5 mmol) in CH2Cl2 (25 mL) and CF3CO2H (50 mL) was stirred at room temperature for 4.5 h before it was concentrated in vacuo to give a brown residue, 21.05 which was used in Step 4 without further purification.


Step 4




embedded image


Concentrated hydrochloric acid (4.5 mL) was added to a solution of the residue 21.05 from Step 3 in methanol (70 mL) and the resulting mixture was warmed to 65° C. in an oil bath. After 18 h, the mixture was concentrated in vacuo to give a brown oil 21.01, which was used further without purification.


Preparation of Intermediate 22.01


Step 1




embedded image


Potassium bis(trimethylsilyl)amide (158 ml of a 0.5M solution in toluene; 79 mmol) was added to a stirred suspension of cyclopropyltriphenyl-phosphonium bromide (33.12 g; 86.4 mmol) in anhydrous tetrahydrofuran (130 ml) and the resulting orange mixture was stirred under an atmosphere of nitrogen at room temperature for a period of 1 h., before the addition of the aldehyde 22.02 (9.68 g; 42.2 mmol) in THF (8 ml). The reaction was then refluxed under an atmosphere of nitrogen for a period of 2 h. After cooling, methanol, diethyl ether and Rochelles salt were added. The organic phase was separated, washed with brine, dried and concentrated under reduced pressure. The crude reaction product was purified by silica gel column chromatography using EtOAc-hexane (1:99) to EtOAc-hexane (5:95) to provide the alkene 22.03 (8.47 g) as a yellow oil.


Step 2




embedded image


A solution of 1M HCl in MeOH/MeOAc was prepared by adding 14.2 ml of acetyl chloride dropwise into cold methanol and diluting the resulting solution to 200 ml at room temperature. The carbamate 22.03 (9.49 g; 37.5 mmol) was dissolved in methanol (12 ml) and added to 1 M HCl in MeOH/MeOAc (150 ml) while cooled in an ice bath. The resulting mixture was maintained at this temperature for 1 h., then the ice bath was removed and stirring continued overnight at room temperature. The volatiles were removed under reduced pressure to yield a yellow oil which was used in the next step without purification.


The yellow oil was dissolved in a mixture of THF (30 ml) and MeOH (20 ml) and treated with triethylamine (15 ml; 108 mmol) until the solution was pH=9-10. After placing in an ice bath, the mixture was treated with N-Boc-Gly-OSu (11.22 g; 41 mmol). The ice bath was withdrawn and the reaction stirred at room temp. for 1 h. The volatiles were removed under reduced pressure and the residue was purified by silica gel column chromatography using methanol (1-3%) in dichloromethane providing the desired amide 22.04 (9.09 g).


Step 3




embedded image


The alcohol 22.04 (9.09 g; 33.6 mmol) was dissolved in acetone (118.5 ml) and treated with 2,2-dimethoxypropane (37.4 ml; 304 mmol) and BF3:Et2O (0.32 ml; 2.6 mmol) and the resulting mixture was stirred at room temperature for a period of 5.5 h The reaction solution was treated with a few drops of triethylamine and the volatiles were removed under reduced pressure. The residue was purified by silica gel column chromatography using 5-25% EtOAc in hexanes to provide the N,O-acetal 22.05 (8.85 g).


Step 4




embedded image


The carbamate 22.05 (8.81 g; 28.4 mmol) was dissolved in acetonitrile (45 ml) and the solution was cooled to −400° C. under an atmosphere of nitrogen. Pyridine (6.9 ml; 85.3 mmol) followed by nitrosium tetrafluoroborate (6.63 g; 56.8 mmol) were added and the resulting reaction mixture maintained below 0° C. until TLC indicated that no starting material remained (approx. 2.25 h.). Pyrrolidine (20 ml; 240 mmol) was added and the cooling bath was withdrawn and stirring was continued at room temperature for 1 h. and then the volatiles were removed under reduced pressure. The residue was quickly passed through a pad of silica gel to provide a yellow oil.


The yellow oil was dissolved in anhydrous benzene (220 ml) and palladium acetate (0.317 g; 1.41 mmol) was added before heating the resulting mixture to reflux, under an atmosphere of nitrogen for a period of 1.5 h. After cooling, the volatiles were removed under reduced pressure and the dark residue was purified by silica gel column chromatography using EtOAc-hexane (1:4) to provide the i) the trans-pyrrolidinone 22.06 (1.94 g) followed by ii) the cis-pyrrolidinone 22.07 (1.97 g).


Step 5




embedded image


Freshly prepared 1M HCl in MeOAc/MeOH (10 ml; as described above) was added to the N,O-acetal 22.06 and stirred at room temperature for 1 h. The solvent was removed under reduced pressure and the residue was purified by silica gel column chromatography using 0-4% MeOH in dichloromethane as eluent to provide the desired alcohol 22.08 (1.42 g), a yellow oil.


Step 6




embedded image


To a solution of the lactam 22.08 (1.29 g; 8.44 mmol) in anhydrous tetrahydrofuran (55 ml) was added lithium aluminum hydride (2.40 g; 63.2 mmol) and the resulting mixture was refluxed for 8 h. After cooling, water, followed by 15% aq. NaOH were added and the resulting mixture was filtered through celite and the solid was washed thoroughly with THF and MeOH. The solvent was removed under reduced pressure and the residue redissolved in dichloromethane, dried and concentrated under reduced pressure to provide the pyrrolidine, used without purification.


Hunigs base (4.5 ml; 25.8 mmol) was added to a mixture of N-Boc-L-tert-Leu-OH (1.76 g; 7.6 mmol), The crude pyrrolidine and HATU (2.89 g; 7.6 mmol) in anhydrous dichloromethane (50 ml) at −60° C., under an atmosphere of nitrogen. The resulting reaction was allowed to come to room temperature slowly, overnight. EtOAc was added and the yellow solution was washed with dil. aq. HCl, sat. aq. sodium bicarbonate, water, brine. The organic layer was dried and concentrated under reduced pressure. The residue was purified by silica gel column chromatography using EtOAc:hexanes (1:3) to give the desired amide 22.09 (2.00 g).


Step 7




embedded image


The alcohol 22.09 (2.00 g; 5.67 mmol) was dissolved in acetone (116 ml) and cooled in an ice bath for 10 min. This solution was then added to a cooled Jones reagent (14.2 ml; approx 2 mmol/ml) and the resulting mixture was stirred at 5° C. for 0.5 h and the cooling bath was removed. The reaction was stirred for a further 2 h. at room temp., before adding to sodium sulfate (28.54 g), celite (15 g) in EtOAc (100 ml). Isopropanol (15 ml) was added after 1 min and then stirred for a further 10 min. and filtered. The filtrate was concentrated under reduced pressure, providing a brown oil which was dissolved in EtOAc. This solution was washed with water, 3% aq. citric acid, brine, dried and concentrated to provide the desired carboxylic acid 22.01 (1.64 g) as a white solid.


Preparation of Intermediate 23.01


Step 1




embedded image


To the mixture of ester 23.02 (6.0 g) and molecular sieve (5.2 g) in anhydrous methylene chloride (35 mL) was added pyrrolidine (5.7 mL, 66.36 mmoL). The resulting brown slurry was stirred at room temperature under N2 for 24 h, filtered and washed with anhydrous CH3CN. The combined filtrate was concentrated to yield the desired product, 23.03.


Step 2




embedded image


To a solution of the product 23.03 from proceeding step in CH3CN (35 mL) was added anhydrous K2CO3, methallyl chloride (2.77 g, 30.5 mmoL), Nal (1.07 g, 6.7 mmoL). The resulting slurry was stirred at ambient temperature under N2 for 24 h. 50 mL of ice-cold water was added followed by 2N KHSO4 solution until pH was 1. EtOAc (100 mL) was added and the mixture was stirred for 0.75 h. Combined organic layer was collected and washed with brine, dried over MgSO4, and evaporated to yield the desired product, 23.04.


Step 3




embedded image


The product 23.04 from the preceding step (2.7 g, 8.16 mmoL) was dissolved in dioxane (20 mL) and treated with freshly prepared 1N LiOH (9 mL). The reaction mixture was stirred at ambient temperature under N2 for 20 h. The reaction mixture was taken in EtOAc and washed with H2O. The combined aqueous phase was cooled to 0° C. and acidified to pH 1.65 using 1N HCl. The turbid mixture was extracted with EtOAc (2×100 mL). Combined organic layer was washed with brine, dried over MgSO4, and concentrated to give the desired acid, 23.05 (3.40 g).


Step 4




embedded image


To a suspension of NaBH(OAc)3 (3.93 g, 18.5 mmoL) in CH2Cl2 (55 mL) was added a solution of product 23.05 from preceding step in anhydrous CH2Cl2 (20 mL) and acetic acid (2 mL). The slurry was stirred at ambient temperature for 20 h. Ice cold water (100 mL) was added to the slurry and stirred for ½ hr. Organic layer was separated, filtered, dried and evaporated to yield the desired product, 23.06.


Step 5




embedded image


To a solution of the product 23.06 from preceding step (1.9 g) in MeOH (40 mL) was treated with excess of CH2N2/Et2O solution and stirred for overnight. The reaction mixture was concentrated to dryness to yield a crude residue. The residue was chromatographed on silica gel, eluting with a gradient of EtOAc/hexane to afford 1.07 g of the pure desired product, 23.07.


Step 6




embedded image


To a solution of product 23.07 from preceding step (1.36 g) in anhydrous CH2Cl2 (40 mL) was treated with BF3. Me2O (0.7 mL). The reaction mixture was stirred at ambient temperature for 20 h and quenched with sat. NaHCO3 (30 mL) ad stirred for ½ hr. Organic layer was separated and combined organic layer was washed with brine, dried over MgSO4, concentrated to give crude residue. The residue was chromatographed on silica gel eluting with a gradient of EtOAc/hexane to afford 0.88 g of the desired compound, 23.08.


Step 7




embedded image


To a solution of the product 23.08 (0.92 g) from preceding step in MeOH (30 mL) was added 10% Pd/C (0.16 g) at room temperature and hydrogenated at ambient temperature under 1 atm. Pressure. The reaction mixture was stirred for 4 h and concentrated to dryness to yield the desired compound, 23.01.


Preparation of Intermediate 50.01


Step 1




embedded image


To a solution of 50.02 (15 g) in MeOH (150 mL) was added conc HCl (34 mL) and the mixture was refluxed for 16 h. The reaction mixture was cooled to room temperature and concentrated. The residue was taken in diethyl ether (250 mL) and washed with cold saturated sodium bicarbonate solution, and brine. The organic layer was dried (Na2SO4) and concentrated to afford the methyl ester 50.03 (12.98 g) which was carried forward without further purification.


Step 2




embedded image


The methyl ester 50.03 from above was dissolved in methylene chloride (100 mL) and cooled to −78° C., under nitrogen atmosphere. DIBAL (1.0 M solution in methylene chloride, 200 mL) was added dropwise over 2 h period. The reaction mixture was warmed to room temperature over 16 h. The reaction mixture was cooled to 0° C. and MeOH (5-8 mL) was added dropwise. A solution of aqueous 10% sodium potassium tartarate (200 mL) was slowly added with stirring. Diluted with methylene chloride (100 mL) and separated the organic layer (along with some white precipitate). The organic layer was washed with 1 N HCl (250 mL), brine (200 mL), dried (Na2SO4) and concentrated to provide the alcohol 50.04 (11.00 g) as a clear oil.


Step 3




embedded image


The alcohol 50.04 from above was dissolved in methylene chloride (400 mL) and cooled to 0° C. under nitrogen atmosphere. PCC (22.2 g) was added in portions and the reaction mixture was slowly warmed to room temperature over 16 h. The reaction mixture was diluted with diethyl ether (500 mL) and filtered through a pad of celite. The filtrate was concentrated and the residue was taken in diethyl ether (500 mL). This was passed through a pad of silica gel and the filtrate was concentrated to provide the aldehyde 50.05 which was carried forward without further purification.


Step 4




embedded image


The aldehyde 50.05 from above was converted to the desired material 50.01 using essentially the method of Chakraborty et. al (Tetrahedron, 1995, 51(33), 9179-90).


Preparation of Intermediate 51.01




embedded image


The required intermediate 51.01 was obtained from the aldehyde 51.02 using the literature described procedure (T. K. Chakraborty et al., Tetrahedron, 1995, 51 (33), 9179-90).


Preparation of Compound 5000:




embedded image



Step 1




embedded image


To a stirred solution of N-Boc-(S)-valinol 5000a (10.0 g, 49.2 mmol), phthalimide (7.40 g, 50.3 mmol) and triphenylphosphine (13.0 g, 49.6 mmol) in anhydrous THF (100 mL) at 0° C. was added diisopropylazodicarboxylate (DIAD, 9.8 mL, 49.4 mmol). The resulting solution was then stirred at rt for 18 h before it was concentrated to dryness. The residue was dissolved in CH2Cl2 and purified by silica gel flash chromatography (10-40% EtOAc in hexanes) to give product 5000b.


Step 2




embedded image


To a stirred solution of 5000b (8.8 g, 26.5 mmol) in methanol (100 mL) at rt was added hydrazine monohydrate (1.4 mL, 28.8 mmol) and the resulting solution was stirred at rt for 18 h. Additional hydrazine monohydrate (0.5 mL, 10.3 mmol) was added and the mixture was brought to reflux and stirred for 4 h before it was cooled to rt. The precipitate was filtered off and the solution was concentrated to dryness. The residue was dissolved in CH2Cl2 and the precipitate was again filtered off. After concentration, a yellow oil was obtained (8.0 g, quant.).


Step 3




embedded image


To a solution of 5000c (1.0 g, 4.94 mmol) in CH2Cl2 l (100 mL) at −30° C. in an acetone bath was added 3-chloropropyl sulfonyl chloride (0.60 mL, 4.93 mmol) and triethylamine (1.10 mL, 7.89 mmol). The resulting solution was warmed to rt along with the bath and stirred for 18 h. Additional CH2Cl2 and 1 N Na2CO3 solution were added and the layers were separated. The aqueous solution was extracted with CH2Cl2 (2×100 mL). The organic solutions were combined, filtered, dried (MgSO4) and concentrated. The residue was purified by flash column chromatography using 10-40% acetone/hexanes to afford 1.0 g (59%) of 5000d.


Step 4




embedded image


The suspension of 5000d (1.0 g, 2.92 mmol) and sodium hydride (0.32 g, 60%, 8.0 mmol) in anhydrous DMF (100 mL) was stirred at rt for 8 h. After cooled to 0° C., 5% aqueous phosphoric acid solution (110 mL) was cautiously added followed by EtOAc (150 mL). The layers were separated and the organic solution was washed with 5% aqueous phosphoric acid solution (100 mL) and saturated sodium bicarbonate solution (2×100 mL) before it was dried, filtered and concentrated. The residue was purified by silica gel flash chromatography (0-40% acetone in hexanes) to give 0.63 g product 5000e (70%).


Step 5




embedded image


The solution of 5000e (0.62 g, 2.02 mmol) in 4 N HCl in dioxane was stirred at rt for 4 h. It was then concentrated to dryness in vacuo to give 0.60 g product 5000 (quant.).


Preparation of Compound of Formula 5001




embedded image



Step 1




embedded image


Compound 5001a was prepared from 5000c and 4-bromobutyryl chloride according to the procedures described for the preparation of compound 5000d.


Step 2




embedded image



Preparation of Compound of Formula 5002




embedded image



Step 1




embedded image


Compound 5002a was prepared from 5000c and 2-bromoethyl chloroformate according to the procedures described for the preparation of compound 5000d.


Step 2




embedded image


Compound 5002b was prepared from 5002a according to the procedures described for the preparation of compound 5000e.


Step 3




embedded image


Compound 5002 was prepared from 5002b according to the procedures described for the preparation of compound 5000 (Step 5).


Preparation of Compound of Formula 5003




embedded image



Step 1




embedded image


Compound 5003b was prepared from N-Boc-(S)-tert-leucinol 5003a according to the procedures described for the preparation of compound 5000b (Step 1).


Step 2




embedded image


Compound 5003 was prepared from 5003b according to the procedures described for the preparation of compound 5000 (Step 5).


Preparation of Compound of Formula 5004




embedded image



Step 1




embedded image


Compound 5004a was prepared from 5003b according to the procedures described for the preparation of compound 5000c (Step 2).


Step 2




embedded image


Compound 5004b was prepared from 5004a according to the procedures described for the preparation of compound 5000d (Step 3).


Step 3




embedded image


Compound 5004c was prepared from 5004b according to the procedures described for the preparation of compound 5000e (Step 4).


Step 4




embedded image


Compound 5004 was prepared from 5004c according to the procedures described for the preparation of compound 5000 (Step 5).


Preparation of Compound of Formula 5005




embedded image



Step 1




embedded image


Compound 5005a was prepared from 5004a according to the procedures described for the preparation of compound 5002a (Step 1).


Step 2




embedded image


Compound 5005b was prepared from 5005a according to the procedures described for the preparation of compound 5002b (Step 2).


Step 3




embedded image


Compound 5005 was prepared from 5005b according to the procedures described for the preparation of compound 5000 (Step 5).


Preparation of Compound of Formula 5006




embedded image



Step 1




embedded image


Compound 5006a was prepared from 5004a and 4-bromobutyryl chloride according to the procedures described for the preparation of compound 5000d.


Step 2




embedded image


Compound 5006 was prepared from 5006a according to the procedures described for the preparation of compound 5000 (Step 5).


Preparation of Compound of Formula 5007




embedded image



Step 1




embedded image


Compound 5007a was prepared from 5004a and 2-carbomethoxy-3-thiophenesulfonyl chloride according to the procedures described for the preparation of compound 5000d.


Step 2




embedded image


To the solution of ester 5007a (4.65 g, 11.1 mmol) in anhydrous toluene (40 mL) at −78° C. was added a solution of DIBAL-H in toluene (23.0 mL, 34.5 mmol). The mixture was stirred at −78° C. for 20 min and at rt for 2 h. Methanol (20 mL) was added followed by 10% aqueous citric acid solution (100 mL). After stirred for 5 min, EtOAc (200 mL) was added and layers were separated. The aqueous solution was extracted with EtOAc (2×100 mL). The organic solutions were combined, dried (MgSO4), filtered and concentrated. The residue was purified by flash column chromatography using 10-50% acetone/hexanes to give 4.6 g (quant.) of 5007b.


Step 3




embedded image


To a solution of 5007b (1.04 g, 2.65 mmol) in CH2Cl2 l (50 mL) at −0° C. was added methanesulfonyl chloride (0.23 mL, 2.97 mmol) and triethylamine (0.80 mL, 5.74 mmol). The mixture was warmed to rt along with ice bath and stirred for 18 h. EtOAc (200 mL) and 5% H3PO4 solution (100 mL) was added and the layers were separated. The organic solutions were washed with 1 N sodium carbonate solution (100 mL) before it was dried (MgSO4), filtered and concentrated. The residue was purified by flash column chromatography using 10-50% acetone/hexanes to give 0.80 g (73%) of 5007c.


Step 4




embedded image


The suspension of 5007d (1.17 g, 2.85 mmol) and cesium carbonate (1.40 g, 4.30 mmol) in anhydrous DMF (100 mL) was stirred at rt for 18 h. Water (50 mL), brine (50 mL) and EtOAc (300 mL) were added and the layers were separated. The organic solution was washed water (3×150 mL) before it was dried, filtered and concentrated to give 0.99 g of the desired product 5007d (93%).


Step 5




embedded image


Compound 5007 was prepared from 5007d according to the procedures described for the preparation of compound 5000.


Preparation of Compound of Formula 5008




embedded image



Step 1




embedded image


Compound 5008b was prepared from 5003a and 5008a according to the procedures described for the preparation of compound 5000b.


Step 2




embedded image


Compound 5008 was prepared from 5008b according to the procedures described for the preparation of compound 5000.


Preparation of Compound of Formula 5009




embedded image



Step 1




embedded image


To a solution of 5008b (1.02 g, 2.93 mmol) in CH2Cl2 (50 mL) at −18° C. was added m-chloroperoxybenzoic acid (3.03 g, 17.6 mmol) and the resulting solution was stirred at −18° C. for 1 h before it was placed in a refrigerator overnight (16 h). After stirred at rt for another 6 h, additional CH2Cl2 was added and the solution was washed with 10% NaHSO4 and 1 N Na2CO3. The organic solutions was dried (MgSO4), filtered and concentrated. The residue was purified by flash column chromatography using 5-60% acetone/hexanes to afford 0.49 g (46%) of product 5009a.


Step 2




embedded image


Compound 5009 was prepared from 5009a according to the procedures described for the preparation of compound 5000.


Preparation of Compound of Formula 5010




embedded image



Step 1




embedded image


Compound 5010a was prepared from 5004a and methyl 2-(chlorosulfonyl) benzoate according to the procedures described for the preparation of compound 5000d.


Step 2




embedded image


Compound 5010b was prepared from 5010a according to the procedures described for the preparation of compound 5007b.


Step 3




embedded image


Compound 5010c was prepared from 5010b according to the procedures described for the preparation of compound 5007c.


Step 4




embedded image


Compound 5010d was prepared from 5010c according to the procedures described for the preparation of compound 5007d.


Step 5




embedded image


Compound 5010 was prepared from 5010d according to the procedures described for the preparation of compound 5000.


Preparation of Compound of Formula 5011




embedded image



Step 1




embedded image


The suspension of 5010a (0.60 g, 1.45 mmol) and cesium carbonate (0.707 g, 2.17 mmol) in anhydrous DMF was stirred at 40° C. for 18 h. Water (50 mL), brine (50 mL) and EtOAc (150 mL) were added and the layers were separated. The organic solution was washed water (3×80 mL) before it was dried, filtered and concentrated to give 0.17 g of the desired product 5011a (31%).


Step 2




embedded image


Compound 5011 was prepared from 5011a according to the procedures described in Step 5 of the preparation of compound 5000.


Preparation of Compound of Formula 5012




embedded image



Step 1




embedded image


Compound 5012a was prepared from 5003a and glutarimide according to the procedures described for the preparation of compound 5000b.


Step 2




embedded image


Compound 5012 was prepared from 5012a according to the procedures described for the preparation of compound 5000.


Preparation of Compound of Formula 5013




embedded image



Step 1




embedded image


The solution of amine 5004a (3.0 g, 13.9 mmol) and 1,4-butane sultone (1.8 mL, 17.7 mmol) in anhydrous THF (25 mL) was refluxed for 16 h. More sultone (0.6 mL, 5.89 mmol) was added and the mixture was refluxed for another 4 h. Phosphorus oxychloride (2.6 mL, 27.9 mmol) was added and the solution was stirred at rt for 4 h. After cooled to 0° C., 50% w/w NaOH solution was added slowly along with water (30 mL) until PH is greater than 12. Ether (200 mL) was then added and layers were separated. The aqueous solution was extracted with THF/diethyl ether (1:1, 150 mL) twice. Organic solutions were combined, dried (MgSO4), filtered and concentrated. The residue was purified by flash column chromatography using 10-50% acetone/hexanes to give 1.49 g of 5013a (32%).


Step 2




embedded image


Compound 5013 was prepared from 5013a according to the procedures described for the preparation of compound 5000.


Preparation of Compound of Formula 5014




embedded image



Step 1




embedded image


To the suspension of 5014a (10.0 g, 41.1 mmol), HOOBt (8.7 g, 53.3 mmol), EDCl (10.0 g, 52.2 mmol) and ammonium chloride (8.90 g, 166 mmol) in anhydrous DMF (400 mL) at rt was added 4-methylmorpholine (22.5 mL, 204.5 mmol). The mixture was stirred at rt for 70 h. Brine (150 mL) and 5% aqueous phosphoric acid solution (150 mL) were added followed by EtOAc (800 mL). The layers were separated and the organic solution was washed with 5% aqueous phosphoric acid solution (400 mL) and saturated sodium bicarbonate solution (2×400 mL) before it was dried, filtered and concentrated to give 8.35 g product 5014b (84%).


Step 2




embedded image


The solution of amide 5014b (8.35 g, 34.5 mmol) in anhydrous THF (100 mL) at rt was added a solution of borane methyl sulfide complex in toluene (43.0 mL, 86.0 mmol) and the mixture was refluxed for 4 h. More THF (100 mL) was added and 3 N HCl solution was added slowly until no gas evolution was observed. To the mixture was added 50% w/w NaOH solution slowly until PH is greater than 12. Ether (200 mL) was then added and layers were separated. The aqueous solution was extracted with THF/diethyl ether (1:1, 150 mL) twice. Organic solutions were combined, dried (MgSO4), filtered and concentrated to give 6.50 g of the product 5014c (83%).


Step 3




embedded image


To the solution of the amine 5014c (0.80 g, 3.50 mmol) and N-carbethoxy phthalimide 5014d (0.90 g, 4.11 mmol) in anhydrous THF (50 mL) at rt was added triethylamine (1.0 mL, 7.17 mmol). The mixture was stirred at rt for 18 h. EtOAc (100 mL) and 5% aqueous phosphoric acid solution (100 mL) were added and the layers were separated. The organic solution was washed with 5% aqueous phosphoric acid solution (80 mL) and dried, filtered and concentrated. The residue was purified by silica gel flash chromatography (5-50% EtOAc in hexanes) to give 0.82 g product 5014e (65%).


Step 4




embedded image


Compound 5014 was prepared from 5014e according to the procedures described for the preparation of compound 5000.


Preparation of Compound of Formula 5015




embedded image


Compound 5015 was prepared from 5014c according to the procedures steps 1-5 described for the preparation of compound 5007.


Preparation of Compound of Formula 5016




embedded image



Step 1




embedded image


Compound 5016b was prepared from 5016a according to the procedure step 1 described for the preparation of compound 5014b.


Step 2




embedded image


Compound 5016c was prepared from 5016b according to the procedure step 2 described for the preparation of compound 5014c.


Steps 3-7




embedded image


Compound 5016 was prepared from 5016c according to the procedure steps 3-7 described for the preparation of compound 5010.


Preparation of Compound of Formula 5017




embedded image



Steps 1-2




embedded image


Compound 5017 was prepared from 5016c and 1,4-butane sultone according to the procedures in steps 1-2 described for the preparation of compound 5013.


Preparation of Compound of Formula 5018




embedded image



Steps 1-2




embedded image


Compound 5018 was prepared from 5003a and morpholine 3,5-dione according to the procedures in steps 1-2 described for the preparation of compound 5012.


Preparation of Compound of Formula 5019




embedded image



Steps 1-2




embedded image


Compound 5019 was prepared from 5003a and 3,3-dimethyl glutarimide according to the procedures in steps 1-2 described for the preparation of compound 5012.


Preparation of Compound of Formula 5020




embedded image



Step 1




embedded image


To the solution of chlorosulfonyl isocyanate (0.80 mL, 9.25 mmol) in anhydrous CH2Cl2 (20 mL) at 0° C. was added slowly benzyl alcohol (0.96 mL, 9.25 mmol). The resulting solution was stirred at 0° C. for 30 min before it was added slowly to a solution of amine 5020a (2.0 g, 9.25 mmol) in anhydrous CH2Cl2 at 0° C. The mixture was stirred at 0° C. for 1 h and at rt for another hour before it was concentrated to dryness. The residue was dissolved in EtOAc and washed with 1 N HCl solution twice and brine once. It was then dried, filtered and concentrated. The products were purified by silica gel flash chromatography (20-70% acetone in hexanes) to give product 5020b (3.11 g, 78%).


Step 2




embedded image


To the solution of 5020b (1.60 g, 3.73 mmol), triphenylphosphine (1.46 g, 5.57 mmol) and 3-bromo-1-propanol (0.36 mL, 4.12 mmol) in anhydrous CH2Cl2 (40 mL) at 0° C. was added diisopropylazodicarboxylate (DIAD, 1.10 mL, 5.55 mmol). The resulting solution was then stirred at rt for 2 h before it was concentrated in vacuo to dryness. The residue was purified by silica gel flash chromatography (10-40% acetone in hexanes) to give the product 5020c (1.62 g, 79%).


Step 3




embedded image


The suspension of 5020d (1.61 g, 2.93 mmol) and cesium carbonate (1.43 g, 4.39 mmol) in anhydrous DMF (100 mL) was stirred at rt for 18 h. Water (50 mL), brine (50 mL) and EtOAc (300 mL) were added and the layers were separated. The organic solution was washed water (3×150 mL) before it was dried, filtered and concentrated to give the desired product 5020d (1.40 g, quant.).


Step 4




embedded image


The mixture of 5020d (1.40 g, 2.98 mmol) and 10% Pd—C (wet basis) in absolute ethanol (50 mL) and methanol (50 mL) was vigorously stirred at rt for 2.5 h. The catalyst was filtered off through a celite pad to give product 5020e (1.10 g, quant.).


Step 5




embedded image


The solution of 5020e in 4 N HCl in dioxane was stirred at rt for 4 h. It was then concentrated to dryness in vacuo to give product 5020.


Preparation of Compound of Formula 5021




embedded image



Steps 1-2




embedded image


Compound 5021 was prepared from 5003a and tetramethylene glutarimide according to the procedures in steps 1-2 described for the preparation of compound 5012.


Preparation of Compound of Formula 5022




embedded image



Step 1




embedded image


The mixture of anhydride 5022a and amine 5004a in anhydrous toluene was brought to reflux and stirred for 46 h before it was cooled and concentrated in vacuo. The residue was purified by silica gel flash chromatography (5-40% EtOAc in hexanes) to give the product 5022b (2.90 g, 79%).


Step 2




embedded image


The compound 5022b was treated with 4 N HCl for 30 min at rt and concentrated in vacuo to give product 5022.


PREPARATION OF EXAMPLES

Preparation of Compound of 5146




embedded image



Step 1




embedded image


To the solution of 5020b (2.0 g, 4.66 mmol), triphenylphosphine (1.83 g, 6.99 mmol) and 2-bromo-ethanol (0.31 mL, 5.12 mmol) in anhydrous CH2Cl2 (30 mL) at 0° C. was added diisopropylazodicarboxylate (DIAD, 0.996 mL, 6.99 mmol). The resulting solution was then stirred at rt for 2 h before it was concentrated in vacuo to dryness. The residue was purified by silica gel flash chromatography (10-40% acetone in hexanes) to give the product 5051a (1.50 g, 63%).


Step 2




embedded image


The suspension of 5051a (1.5 g, 2.79 mmol) and cesium carbonate (1.36 g, 4.19 mmol) in anhydrous DMF (100 mL) was stirred at rt for 18 h. Water (50 mL), brine (50 mL) and EtOAc (300 mL) were added and the layers were separated. The organic solution was washed water (3×150 mL) before it was dried, filtered and concentrated to afford 1.37 g of crude product. Purified via flash column(10-30% Acetone-hexane) to afford 0.98 g of 5051 b (82%).


Step 3




embedded image


To compound 5051b (0.98 g, 2.15 mmol, 1 equiv.) was added 4 M HCl in dioxane (25 mL) at room temp. Stirred for 1 hr. TLC showed no starting material. Evaporated off the solvent and azeotroped with hexane and then with ether. Washed out the non-polar material with ether and kept under high vac. over the weekend to give the product as a pale yellow solid (842 mg, quant.). Product was used without purification.


Step 4




embedded image


To the amine hydrochloride 1.04 (3 g, 9.4 mmol) in Dichloromethane (50 ml) was added 50 ml of saturated NaHCO3. Stirred vigorously at ice temperature for 5 min. Stopped stirring and phosgene (2 equiv. 20% in toluene, 10 mL) was syringed out to the lower layer and restored the vigorous stirring immediately. Checked the TLC at times and after 2 hrs it showed complete consumption of starting material and then separated the layers. Washed the water layer one more time with dichloromethane(3 ml) and dried over anhydrous sodium sulfate. Filtered and evaporated off the solvent using rotary evaporator under reduced pressure without hot bath to half the volume and then flushed N2 for 15 minutes. Diluted to 33.5 mL with dichloromethane and used as 0.28 M solution for further couplings.


Step 5




embedded image


To the amine 5051c, prepared as described before (741 mg, 2.09 mmol, 1 equiv.) in DCM (10 ml) was added DIPEA (8 equiv., 2.19 mL, 12.54 mmol) at ice temperature. Added isocyanate 5051d (1 equiv, 7.46 of 0.028M solun) under N2 atm and stirred for 30 min at ice temperature and 90 min at room temperature. Quenched with 10% citric acid and extracted with EtOAc and washed with brine. Dried over anhydrous sodium sulfate and filtered and evaporated off the solvent. The crude product was purified via flash column 10-40% % Acetone-hexane) to afford 800 mg of 5051e as a white solid (58%). 1H NMR (CDCl3, 300 MHz), δ, 7.4(m, 5 H), 5.3(bs, 2 H), 4.4(d, 2 H,), 4-3.6 (m, 6 H), 3.6 (s, 3H), 3.25 (m,2H), 3(m, 2 H), 1.02-0.98 (m, 25 H).


Step 6




embedded image


The mixture of 5051e (0.600 g, 0.904 mmol) and 10% Pd—C (10% wt., 60 mg) in methanol (10 mL) was vigorously stirred at rt for 1.5 h. The reaction mixture was filtered through a celite pad to give product 5051f (0.45 g, 94%.).


Step 7




embedded image


To the sulfamide 5051f (400 mg, 0.756 mmol, 1 equiv.) in DMF(10 mL) at ice temperature, added Cs2CO3 (368 mg, 1.5 equiv, 1.134 mmol) and Mel (3.78 mmol, 5 equiv., 0.355 mL) under nitrogen atmosphere. Stirred at room temperature for overnight. As the TLC and LCMS showed no starting material, quenched with water and extracted with EtOAC. Washed 4 times with water and with brine and dried over anhydrous sodium sulfate. Filtered and evaporated off the solvent and purified via flash column (20-40% acetone-hexane) to afford 390 mg of 5051g (95%). 1H NMR (CDCl3, 300 MHz) 4.4(d, 1 H,), 3.99-4.01 (d, 1 H), 3.8 (d, 2H), 3.7(s, 3H), 3.6 (m, 2H), 3.25(m, 2H), 3.01 (m,3H), 2.8(s, 3H), 1.4(m, 1H). 1.2(m, 1H), 1.00-0.98 (m, 24 H).


Step 8




embedded image


To the methyl ester, 5051g (300 mg, 0.607 mmol, 1 equiv.) in dioxane (10 ml) was added LiOH (1.8 mL, 1N in water, 3 equiv) and stirred overnight. Quenched with 1 N HCl and extracted with EtOAC. Washed with brine and dried over anhydrous sodium sulfate. Filtered and evaporated off the solvent to give the crude product (290 mg, 90%).


Step 9




embedded image


To solution of the amine 10.11, prepared as described before (16.51 mg, 0.079 mmol, 1.2 equiv.), and 5051h (35 mg, 0.066 mmol, 1 equiv.) in DMF (10 ml) at 0° C. was added HATU (1.2 equiv., 0.079 mmol, 30.18 mg) followed by DIPEA (8 equiv., 92.44 □L, 0.529 mmol). Stirred for 1 h at ice temperature and then 2 h at room temperature. Quenched with 1 N HCl and extracted with EtOAC. Washed with sat'd sodium bicarbonate and then with brine. Dried over anhydrous sodium sulfate, filtered and evaporated off the solvent to give the product (52 mg, 100%).


Step 10




embedded image


To the hydroxy amide 5051i (60 mg, 0.087 mmol, 1 equiv.) in 1:1 mixture of DMF/toluene(6 mL) at ice temperature was added EDCl.HCl (167 mg, 10 equiv., 0.878 mmol) and dichloroacetic acid (36.29 □L, 5 equiv., 0.439 mmol) and stirred for 5 min. Then stirred at room temperature for further 3 hrs. Quenched with brine and washed with 1 N HCl followed by sat'd NaHCO3 and again with brine. Dried over anhydrous sodium sulfate, filtered and evaporated off the solvent. The crude product was purified by preparative TLC (40% acetone-hexane) to afford 25.2 mg of 5146 (43%). LRMS, m/z, 682[(M+1)], 375.


Preparation of Compound of Formula 5237




embedded image



Step 1




embedded image


To compound 5051b (1.16 g, 2.5 mmol) in methanol was added Pd/C (5% by wt, 116 mg) under N2 atmosphere after evacuation. Evacuated again and stirred under H2 for 90 min. TLC showed complete consumption of starting material. Filtered and evaporated off the solvent to afford 5052a (819 mg, 100%).


Step 2




embedded image


To the amino compound (285 mg, 1equiv.) in DMF (10 ml) added 2-iodo propane (5 equiv.) and Cesium carbonate (1.5 equiv.) at ice temperature and stirred for overnight. Temperature of the reaction mixture was slowly raised to room temperature. Quenched with water and extracted with EtOAc and washed the combined organic extracts with brine. Dried over anhydrous sodium sulfate, filtered and evaporated off the solvent. The crude product, 5052b was used as it is for next step (310 mg, 96%). 1H NMR (CDCl3, 300 MHz) 4.5(d, 1 H,), 3.8-3.6 (m, 2 H), 3.4-3.2 (m, 2H), 3.01-2.8(m, 2H), 1.9 (m, 1H), 1.4 (s,9H), 1.2(dd, 6H), 0.98(s, 9H).


Step 3




embedded image


Compound 5052b was dissolved in 4 N HCl in dioxane at rt and the solution was stirred for 1 hr. TLC showed no starting material. Evaporated off the solvent and azeotroped with hexane and then with ether. Kept under high vac. for overnight to afford 221 mg of 5052c (96%).


Step 4




embedded image


Dissolved the amine salt (180 mg, 0.60 mmol, 1 equiv.) in DCM (5 ml) and added 5 mL of NaHCO3 (sat'd) at ice temperature. Stirred vigorously for 2 min. Stopped stirring and syringed out phosgene (2 equiv.) to the reaction mixture and restored the vigorous stirring. After 90 min. separated the layers and dried over anhydrous sodium sulfate. Filtered and evaporated off the solvent without hot bath under vac. Diluted with DCM and kept as stock solution of 0.02 M.


Step 5




embedded image


To a mixture of acid 1.17 (500 mg, 1.37 mmol, 1 equiv.) and amine hydrochloride (317.8 mg, 1.37 mmol, 1 equiv.) in DMF at ice temperature was added HATU (1.2 equiv. 619 mg) and DIPEA (6 equiv., 8.15 mmol, 1.42 mL) under N2 and stirred for overnight. The temperature was slowly allowed to raise to room temperature. Quenched with 1 N HCl and extracted with EtOAc. Washed with NaHCO3 (sat) and then with brine. Washed with ice-cold water (5×20 ml) and again with brine. Dried over anhydrous Na2SO4. Filtered and evaporated off the solvent to afford 580 mg of 5052e (77%).


Step 6




embedded image


To the crude hydroxy amide 5052e (1.05 mmol, 580 mg, 1 equiv.) in DCM (15 mL) at room temperature, was added Dess-Martin Periodinane(897 mg, 2.11 mmol, 2 equiv.). Stirred for 5 h at rt. Quenched with saturated NaHCO3 and sodium bisulfite and extracted with EtOAc. Washed with brine and dried over anhydrous sodium sulfate. Filtered and evaporated off the solvent. Crude product was purified by flash column(10-40% acetone-hexane) to afford 450 mg of the ketoamide product. The product was dissolved in 4 N HCl solution in dioxane and stirred at rt for 3 h before it was concentrated to dryness in vacuo to give 5052f (0.40 g, 77%).


Step 7




embedded image


To the amine salt, 5052f, (20 mg, 0.041 mmol, 1 equiv.) in DCM (5 ml) was added DIPEA (6 equiv.) at ice temperature. Added isocyanate, 5052d (1.1 equiv, 0.045 mmol, 2.27mL of 0.02M solun) under N2 atm and stirred for 30 min at ice temperature and 90 min at room temperature. Quenched with citric acid and extracted with EtOAc and washed with brine. Dried over anhydrous sodium sulfate and filtered and evaporated off the solvent. The crude product was purified via flash column (10-40% acetone-hexane) to afford 12 mg of 5237 (40%).


Preparation of Compound 5250




embedded image



Step 1




embedded image


Compound 5250a was prepared from compound 20.03 according to the procedures described for the preparation of 20.08. To the solution of amine 5010 (0.817 g, 2.68 mmol) and carbamate 5250a (0.976 g, 2.06 mmol) in anhydrous DCM (60 mL) at 0° C. was added DIPEA (0.90 mL, 5.15 mmol). The solution was allowed to warm to rt along with ice bath and stirred for 18 h before it was concentrated. The residue was dissolved in EtOAc and washed with 5% H3PO4 solution and saturated sodium bicarbonate solution. It The products were purified by silica gel flash chromatography to give product 5250b (1.07 g, 86%).


Step 2




embedded image


The solution of methyl ester 5250b (1.06 g, 1.76 mmol) and LiOH (0.105 g, 4.40 mmol) in THF/MeOH/H2O (1:1:1, 30 mL) was stirred at room temperature for 4 h. Methanol and THF were removed under reduced pressure. The aqueous solution was acidified to PH˜2 using 1 N aqueous HCl solution (50 mL) and saturated with solid sodium chloride before it was extracted with EtOAc (3×150 mL). The organic solutions were combined, dried (MgSO4), filtered and concentrated in vacuo to give a white solid 5250c (quantitative).


Step 3




embedded image


To the suspension of 5250c (0.052 g, 0.088 mmol), HOOBt (0.022 g, 0.132 mmol), EDCl (0.027 g, 0.141 mmol) and amine hydrochloride 13.01 (0.030 g, 0.132 mmol) in anhydrous DMF (6 mL) and DCM (6 mL) at −20° C. was added 4-methylmorpholine (0.030 mL, 0.273 mmol). The mixture was stirred at −20° C. for 20 min and then in a refrigerator for 18 h. Brine (30 mL) and 5% aqueous phosphoric acid solution (30 mL) were added followed by EtOAc (100 mL). The layers were separated and the organic solution was washed with 5% aqueous phosphoric acid solution (50 mL) and saturated sodium bicarbonate solution (2×50 mL) before it was dried, filtered and concentrated to give product 5250d (quantitative).


Step 4




embedded image


The mixture of hydroxyamide 5250d and Dess-Martin periodinane (g) in CH2Cl2 was stirred for 2 h, quenched with saturated Na2S2O3 solution and saturated NaHCO3 solution. After layers were separated, the organic solution was extracted with DCM twice and the combined organic solution was dried, filtered and concentrated to give g product 5250 (0.048 g, 72%, two steps).


Preparation of Compound 5648




embedded image



Step 1




embedded image


To a cooled solution (0° C.) of (S)-tert-leucinol (5.0 g, 42.7 mmol) in CH2Cl2 (100.0 mL) was added benzyl chloroformate (6.7 mL, 47.0 mmol), followed by Hunig's base (9.3 mL, 53.3 mmol). The reaction mixture was allowed to warm to room temperature overnight, diluted with ethyl acetate (500 mL), washed with 10% KH2PO4, followed by saturated NaHCO3 and brine. The organic layer was dried over MgSO4 and concentrated to yield 5500a (10.7 g, 100%).


Step 2




embedded image


To a cooled solution (0° C.) of 5500a (10.7 g, 42.7 mmol) in CH2Cl2 (100.0 mL) was added pyridine (20.0 mL), followed by methanesulfonyl chloride(3.63 mL, 47.0 mmol). The reaction mixture was allowed to warm to room temperature overnight, concentrated, redissolved in ethyl acetate (500 mL), washed with saturated NaHCO3 and brine. The organic layer was dried over MgSO4, concentrated and purified by flash chromatography over SiO2 using ethyl acetate/hexane (1:4) to yield 5500b (14.0 g, 100%).


Step 3




embedded image


To a solution of 5500b (3.1g, 9.9 mmol) in PhMe(72 mL) containing water (400 μL) was added TBAB (582 mg, 1.8 mmol), K2CO3 (2.72 g, 1.97 mmol), 1-hydroxypyridine (937 mg, 9.85 mmol). The reaction mixture was refluxed overnight with stirring, filtered, evaporated and concentrated. The crude was purified by flash chromatography over SiO2 using ethyl acetate/CH2Cl2 (1:9 to 1:1) to yield 5500c (1.15 g, 35%).


Step 4




embedded image


To a solution of 5500c (1.15 g) in MeOH (50 mL) was added Pd/C (10% w/w, 450 mg) and placed in a Parr shaker under a hydrogen atmosphere (40 PSI). 5500d was formed quantitatively when the reaction was stopped after 1.2 h and 5500e was formed quantitatively after 4 h. In either case the reaction mixture was filtered over a short pad of celite to yield the corresponding amine.


Step 5




embedded image


Saturated NaHCO3 (7.0 mL) was added to an ice-cold solution of 5500d (194.0 mg, 1 mmol) in CH2Cl2 (7 mL). The reaction mixture was stirred vigorously for 10 min. and COCl2 (1.85 M solution in toluene, 1.35 mL) was added to it and stirring was continued at room temperature for 1 h. The organic layer was dried over MgSO4, filtered and concentrated to half the volume to yield 5500f as a solution in CH2Cl2. 5500f was stored as a 0.05 M solution in CH2Cl2.


Step 6




embedded image


Compound 5500g was synthesized using the procedure of step 5 in the preparation of 5500.


Step 7




embedded image


To a cooled solution (0° C.) of the acid (1.17, 368.5 mg) and (10.11, 565.3 mg) in DMF (10.0 mL) was added HATU (1.03 g), followed by DIPEA (1.382 mL). The reaction mixture was stirred at 0° C. for 1 h and at room temperature for 2 h, diluted with ethyl acetate (20.0 mL), washed with 1N HCl, brine, dried over NaHCO3, filtered, concentrated.


To the crude in PhMe/DMSO (10.0 mL, 1:1) at 0° C. was added EDCl (5.2 g), followed by dichloroacetic acid (447 μL). The ice bath was removed and the reaction was stirred at room temperature for 2 h. To it was added EtOAc (75 mL) the reaction mixture was washed with H2O (25.0 mL), with saturated NaHCO3 and brine, then purified over SiO2 using acetone/hexane (1:9 to 9:1) to yield 5500h.


Step 9




embedded image


Compound 5500h was dissolved in 4N HCl in dioxane (25 mL). The reaction was stirred at room temperature for 30 min. and concentrated to yield a white solid, 5500i (350.0 mg).


Step 10




embedded image


To a cooled solution (0° C.) of the amine hydrochloride 5500i (25.0 mg, 0.051 mmol) in CH2Cl2 (2.0 mL) was added 5500f (2.5 mL, 0.135 mmol), followed by DIPEA (68 uL, 0.4 mmol). The reaction mixture was stirred at room temperature for 1.2 h, diluted with ethyl acetate (20.0 mL), washed with 3% citric acid, brine, dried over NaHCO3, filtered, concentrated and purified over SiO2 using acetone-hexane (1:9) to yield 5648 (10.0 mg). LCMS 641.2(M+H).


Preparation of Compound 5644




embedded image



Step 11




embedded image


Compound 5644 was synthesized using the procedures described for the preparation of 5648. LCMS 645.0 (M+H).


A number of analogs of 5644, described in Table 2 were prepared from 5500g using the procedures described in the preparation of 5644.


Preparation of Compound 5632




embedded image



Step 1




embedded image


Compound 5632a was prepared from (S)-N-boc valinol according to the procedures in the preparation of 5500g (steps 1-6). Compound 5632 was synthesized according to procedures described for the preparation of 5648. LCMS: 631.1 (M+H)


A number of analogs of compound 5632 in Table 2 were prepared from 5632a using the same procedures as in the preparation of 5632.


Preparation of Compound 5665




embedded image



Step 1




embedded image


To a cooled (0° C.) of amine 5004a (560.0 mg, 2.58 mmol) in CH2Cl2 (15.0 mL) was added chloropropyl isocyanate (Aldrich, 531 mL, 5.16 mmol) and the reaction mixture was stirred at room temperature for 12 h, washed with saturated NaHCO3, brine, dried over MgSO4, filtered, concentrated and purified over SiO2 using ethyl-acetate-hexane (1:1) to yield 5520a (660 mg, 1.91 mmol, 76%).


Step 2




embedded image


To a cooled solution of 5520a (660.0 mg, 1.96 mmol) in THF (30 mL) was added NaH. (60% dispersion in mineral oil, 313.0 mg, 7.84 mmol). The reaction mixture was allowed to warm up to room temperature over 4 hour, carefully quenched with ice cold water, extracted with CH2Cl2. The organic layer was washed with brine, dried over MgSO4 filtered and concentrated. The crude was purified over SiO2 using ethyl acetate-hexane (1:1) to yield 5520b (220.0 mg, 1.0 mmol).


Step 3




embedded image


To 5520b (660.0 mg, 1.96 mmol) was added 4N HCl in dioxane (25 mL). The reaction was stirred at room temperature for 30 min and concentrated to yield a white solid which was dissolved in CH2Cl2 (7.0 mL) and sat'd NaHCO3 (7.0 mL) was added to it. After stirring vigorously for 10 min, the layers were allowed to separate and phosgene (2.5 equiv.) was added to the organic layer in one shot. Vigorous stirring was resumed immediately, the ice bath was removed and stirring was continued for 1 h, the layers were separated. The organic layer was dried over MgSO4, filtered and concentrated to half to its volume and 5520c was stored as a 0.05 M solution in CH2Cl2.


Step 4




embedded image


To a cooled solution (0° C.) of the amine hydrochloride 5500i (25.0 mg, 0.051 mmol) in CH2Cl2 (2.0 mL) was added 5520c (2.5 mL, 0.135 mmol), followed by DIPEA (68 uL, 0.4 mmol). The reaction mixture was stirred at room temperature for 1.2 h, diluted with ethyl acetate (20.0 mL), washed with 3% citric acid, brine, dried over NaHCO3, filtered, concentrated and purified over SiO2 using acetone-hexane (1:9) to yield 5665 (10.0 mg). LCMS 646.2 (M+H).


A number of analogs of 5665 described in Table 2 were prepared using 5520c according to the procedures described for the preparation of 5648.


Preparation of Compound 5688




embedded image



Step 1




embedded image


Amine 5004a (998.0 mg, 4.6 mmol) was converted into the corresponding isocyanate 5030a using the procedure of step 5 in the preparation of 5648.


Step 2




embedded image


To the isocyanate in CH2Cl2 (10.0 mL) was added N-methyl chloropropyl amine 5030b (Aldrich, 490.0 mg, 4.6 mmol) and the reaction mixture was stirred at room temperature for 12 h, washed with sat'd NaHCO3, brine, dried over MgSO4, filtered, concentrated and purified over SiO2 using ethyl acetate/hexane to give 5530c (1.6 g, 4.6 mmol) in 100% yield.


Step 3




embedded image


Compound 5530c was converted to 5530d using the experimental procedures Step 2 and Step 3 in the preparation of compound 5665.


Step 4




embedded image


To a cooled solution (0° C.) of the amine hydrochloride 5500i (25.0 mg, 0.051 mmol) in CH2Cl2 (2.0 mL) was added 5530d (2.5 mL, 0.135 mmol), followed by DIPEA (68 uL, 0.4 mmol). The reaction mixture was stirred at room temperature for 1.2 h, diluted with ethyl acetate (20.0 mL), washed with 3% citric acid, brine, dried over NaHCO3, filtered, concentrated and purified over SiO2 using acetone-hexane (1:9) to yield 5688 (17.0 mg). LCMS 660.2 (M+H).


A number of analogs of compound 5688 in Table 2 were prepared from 5530d using the procedures described above.


Preparation of Compound 5700




embedded image



Step 1




embedded image


Compound 3-chloro-propanol (181 uL, 2.51 mmol) was converted into the corresponding chloroformate 5540b using the procedure step 5 in the preparation of 5648.


Step 2




embedded image


To the ice-cooled chloroformate in THF (10.0 mL) was added amine 5004a (543.0 mg, 2.51 mmol) and the reaction mixture was stirred at room temperature for 12 h, diluted with EtOAc (250.0 mL) washed with sat'd NaHCO3, brine, dried over MgSO4, filtered, concentrated to yield 5540c (664 mg, 1.97 mmol). The crude was used directly in the next step.


Step 3




embedded image


Compound 5540c was converted to 5540d using the experimental procedures from Step 2 and Step 3 in the preparation of compound 5665.


Step 4




embedded image


To a cooled solution (0° C.) of the amine hydrochloride 5500i (30.0 mg, 0.0.6 mmol) in CH2Cl2 (2.0 mL) was added 5540d (2.6 mL, 0.131 mmol), followed by DIPEA (91 uL, 0.52 mmol). The reaction mixture was stirred at room temperature for 1.2 h, diluted with ethyl acetate (20.0 mL), washed with 3% citric acid, brine, dried over NaHCO3, filtered, concentrated and purified over SiO2 using acetone-hexane (1:9) to yield 5700 (28.0 mg). LCMS 647.2 (M+H).


A number of analogs of 5700 in Table 2 were prepared from 5540d using procedures described above.


Preparation of Target Compound 5743




embedded image



Step 1




embedded image


To a solution of 5003b (1.0 g, 2.9 mmol) in MeOH at −4° C. was added NaBH4 (11.52 mmol, 430.0 mg). After stirring for 20 min, the reaction was quenched with CH2Cl2/sat'd NaHCO3 (1:1, 60 mL). The aqueous layer was extracted with DCM (3×20 mL). The organic layer was dried over MgSO4 and concentrated to yield a white solid which was used directly in the next step. The crude from the previous step was re-dissolved in EtOH (50.0 mL) and Pd/C (10% by weight, 200 mg) was added. The reaction mixture was stirred under a H2 atmosphere for 12 h, filtered over a pad of celite and concentrated to yield 5550a (0.99 g).


Step 2




embedded image


Compound 5550a was converted to 5550b using the experimental procedures from Step 3 in the preparation of compound 5665.


Step 3




embedded image


To a cooled solution (0° C.) of the amine hydrochloride 5550d (45.0 mg, 0.094 mmol) in CH2Cl2 (2.0 mL) was added 5550b (2.8 mL, 2.0 mmol), followed by DIPEA (100 uL, 0.52 mmol). The reaction mixture was stirred at room temperature for 1.2 h, diluted with ethyl acetate (0.0 mL), washed with 3% citric acid, brine, dried over NaHCO3, filtered, concentrated and purified over SiO2 using EtOAc-CH2Cl2 (1:9 to 9:1) to yield product 5743 (32.0 mg). LCMS 705.2 (M+H).


A number of analogs of 5743 in Table 2 were prepared from 5550b using procedures described above.


Preparation of Compound 5754




embedded image



Step 1




embedded image


The isocyanate 5754a was prepared from amine 5019 according to the procedures described for the preparation of 5052d from 5052c.


Step 2




embedded image


The product 5754 was prepared from 5754a and 5052f according to the procedures described for the preparation of compound 5237.


A number of analogs of 5754 in Table 2 were prepared from 5754a using procedures described above.


Preparation of Compound 5812




embedded image



Step 1




embedded image


To the amine, (1.2 g, 5.5 mmol, 1 equiv.) in DCM (50 mL) was added 50 ml of sat. NaHCO3. Stirred vigorously at ice temperature for 5 min. Stopped stirring and phosgene (2 equiv., 11.09 mmol, 20% in toluene, 5.96 mL) was syringed out to the lower layer and restored the vigorous stirring immediately. Separated the layers after 1 h. Washed the water layer one more time with DCM (3 ml) and dried over sodium sulfate. Filtered and evaporated at high vac. with out hot bath to half the volume and then purged N2 for 15 minutes. Diluted to 100 mL in DCM. Used as it is for further reaction.


Step 2




embedded image


To the amine 5812b (Aldrich, 0.5 g, 4.2 mmol, 1 equiv.) in methanol (20 mL) was added the isocyanate (5.5 mmol, 1.3 equiv.) and triethyl amine (3.4 ml, 6 equiv, 25.2 mmol) and refluxed the reaction mixture at 90° C. for 48 h. Stirring was continued at 100° C. for another 5 h. The mixture was concentrated and purified through a flash column chromatography to give product 5812c in 96.7% yield.


Step 3




embedded image


To compound 5812c (650 mg) was added 4 M HCl/Dioxane (25 mL) and stirred at room temperature for 0.5 h. Evaporated off the solvent and azeotroped with hexane and then with ether. Kept under high vac for 4 h to give the product in quantitative yield.


Step 4




embedded image


To the amine hydrochloride (20 mg, 0.08 mmol, 1.3 equiv.) in DCM (5 ml) was added DIPEA (6 equiv.) at 0° C. Added isocyanate(3 mL, 0.02M in DCM) under N2 atmosphere. After stirred for 30 min at 0° C. and 90 min at room temperature. Quenched with citric acid and extracted with EtOAc and washed with brine. Dried over anhydrous sodium sulfate and filtered and evaporated off the solvent. The crude product was purified via flash column chromatography (10-40% acetone-hexane) to give compound 5812 in 41% yield.


Representative compounds of the invention which exhibit excellent HCV protease inhibitory activity are listed below in Tables 1 and 2 along with their biological activity in HCV continuous assay (ranges of Ki* values in nanomolar, nM): category A≦50 nM; category B>50 nM.












TABLE 1





Compound


mol


number
structure
Ki*
weight


















5106


embedded image


A
652.86009





5107


embedded image


A
678.89833





5108


embedded image


B
720.85847





5109


embedded image


A
638.833





5110


embedded image


A
652.86009





5111


embedded image


A
680.91427





5112


embedded image


A
694.94136





5113


embedded image


A
652.86009





5114


embedded image


A
692.92542





5115


embedded image


A
680.91427





5116


embedded image


A
666.88718





5117


embedded image


A
666.88718





5118


embedded image


A
708.84732





5119


embedded image


A
734.88556





5120


embedded image


A
640.84894





5121


embedded image


A
694.94136





5122


embedded image


A
654.87603





5123


embedded image


A
668.90312





5124


embedded image


A
668.90312





5125


embedded image


A
690.90948





5126


embedded image


A
709.95603





5127


embedded image


A
721.96718





5128


embedded image


A
683.91779





5129


embedded image


A
816.03767





5130


embedded image


A
681.90185





5131


embedded image


A
695.92894





5132


embedded image


A
723.98312





5133


embedded image


A
720.9796





5134


embedded image


A
706.95251





5135


embedded image


A
718.96366





5136


embedded image


A
680.91427





5137


embedded image


A
669.8907





5138


embedded image


A
692.92542





5139


embedded image


A
734.98463





5140


embedded image


A
678.89833





5141


embedded image


A
760.9238





5142


embedded image


A
692.92542





5143


embedded image


A
732.99075





5144


embedded image


A
706.95251





5145


embedded image


A
692.92542





5146


embedded image


A
681.90185





5147


embedded image


A
667.87476





5148


embedded image


A
667.87476





5149


embedded image


A
653.84767





5150


embedded image


A
695.92894





5151


embedded image


A
706.93045





5152


embedded image


A
720.95754





5153


embedded image


A
746.99578





5154


embedded image


A
749.01172





5155


embedded image


A
705.92415





5156


embedded image


A
691.89706





5157


embedded image


A
749.90023





5158


embedded image


A
707.94009





5159


embedded image


A
721.96718





5160


embedded image


A
683.91779





5161


embedded image


A
708.94639





5162


embedded image


A
742.94233





5163


embedded image


A
728.91524





5164


embedded image


A
742.98596





5165


embedded image


A
740.97002





5166


embedded image


A
723.86199





5167


embedded image


A
681.90185





5168


embedded image


A
719.95124





5169


embedded image


A
744.97984





5170


embedded image


A
738.95408





5171


embedded image


A
728.95887





5172


embedded image


A
700.90469





5173


embedded image


A
714.93178





5174


embedded image


A
754.99711





5175


embedded image


A
720.9796





5176


embedded image


A
732.99075





5177


embedded image


A
761.02287





5178


embedded image


A
775.04996





5179


embedded image


A
773.03402





5180


embedded image


A
787.06111





5181


embedded image


A
702.92063





5182


embedded image


A
747.01784





5183


embedded image


A
735.00669





5184


embedded image


A
746.99578





5185


embedded image


A
732.96869





5186


embedded image


A
692.92542





5187


embedded image


A
706.95251





5188


embedded image


A
730.97481





5189


embedded image


A
694.94136





5190


embedded image


A
720.9796





5191


embedded image


A
708.96845





5192


embedded image


A
734.98463





5193


embedded image


A
680.91427





5194


embedded image


A
771.01808





5195


embedded image


A
704.93657





5196


embedded image


A
706.95251





5197


embedded image


A
666.88718





5198


embedded image


A
762.03251





5199


embedded image


A
707.94009





5200


embedded image


A
668.90312





5201


embedded image


A
749.97773





5202


embedded image


A
723.93949





5203


embedded image


A
709.9124





5204


embedded image


A
750.02136





5205


embedded image


A
738.01021





5206


embedded image


A
761.02287





5207


embedded image


B
759.00693





5208


embedded image


A
746.99578





5209


embedded image


A
756.99099





5210


embedded image


A
709.95603





5211


embedded image


A
718.9416





5212


embedded image


A
732.96869





5213


embedded image


B
707.94009





5214


embedded image


A
720.95754





5215


embedded image


A
667.87476





5216


embedded image


B
695.92894





5217


embedded image


B
709.95603





5218


embedded image


A
695.92894





5219


embedded image


A
723.98312





5220


embedded image


A
709.95603





5221


embedded image


A
764.99232





5222


embedded image


A
769.0242





5223


embedded image


A
754.99711





5224


embedded image


A
720.9796





5225


embedded image


A
735.00669





5226


embedded image


A
726.94293





5227


embedded image


A
740.97002





5228


embedded image


A
732.99075





5229


embedded image


A
767.00826





5230


embedded image


A
730.97481





5231


embedded image


A
692.93





5232


embedded image


A
706.95





5233


embedded image


B
781.04





5234


embedded image


B
747.02





5235


embedded image


A
735.99





5236


embedded image


A
708.97





5237


embedded image


A
735.99





5238


embedded image


A
748.01





5239


embedded image


A
762.03





5240


embedded image


A
750.02





5241


embedded image


A
735.99





5242


embedded image


A
745.99





5243


embedded image


A
707.94009





5244


embedded image


A
721.96718





5245


embedded image


A
763.03881





5246


embedded image


A
783.82184





5247


embedded image


A
750.79191





5248


embedded image


A
769.0242





5249


embedded image


A
767.00826





5250


embedded image


A
754.99711





5251


embedded image


A
757.01305





5252


embedded image


A
789.8476





5253


embedded image


A
726.94293





5254


embedded image


A
740.97002





5255


embedded image


A
775.04996





5256


embedded image


A
789.07705





5257


embedded image


A
781.03535





5258


embedded image


A
783.05129





5259


embedded image


A
737.00057





5260


embedded image


A
769.0242





5261


embedded image


A
787.06111





5262


embedded image


A
761.02287





5263


embedded image


A
781.03535



















TABLE 2





Compound





number
structure
Ki*
mol weight


















5603


embedded image


A
612.77596





5604


embedded image


A
626.80305





5605


embedded image


A
640.83014





5606


embedded image


A
694.80143





5607


embedded image


B
652.84129





5608


embedded image


B
656.87317





5609


embedded image


B
658.88911





5610


embedded image


A
654.85723





5611


embedded image


A
604.75306





5612


embedded image


A
618.78015





5613


embedded image


A
720.91717





5614


embedded image


A
670.90026





5615


embedded image


B
666.86838





5616


embedded image


A
686.77853





5617


embedded image


A
646.83433





5618


embedded image


A
678.8359





5619


embedded image


A
706.89008





5620


embedded image


A
644.86202





5621


embedded image


B
658.88911





5622


embedded image


A
630.83493





5623


embedded image


A
656.87317





5624


embedded image


A
604.79669





5625


embedded image


B
674.84488





5626


embedded image


A
666.82475





5627


embedded image


A
646.83433





5628


embedded image


A
632.80724





5629


embedded image


A
618.78015





5630


embedded image


A
700.80562





5631


embedded image


A
660.86142





5632


embedded image


A
630.83493





5633


embedded image


A
644.86202





5634


embedded image


A
718.90123





5635


embedded image


A
692.86299





5636


embedded image


A
670.85663





5637


embedded image


A
658.84548





5638


embedded image


A
630.7913





5639


embedded image


A
644.81839





5640


embedded image


A
644.81839





5641


embedded image


A
670.90026





5642


embedded image


A
684.92735





5643


embedded image


A
630.83493





5644


embedded image


A
644.86202





5645


embedded image


A
658.88911





5646


embedded image


A
618.78015





5647


embedded image


A
672.87257





5648


embedded image


A
640.83014





5649


embedded image


A
626.80305





5650


embedded image


A
654.85723





5651


embedded image


A
668.88432





5652


embedded image


A
672.9162





5653


embedded image


A
694.87893





5654


embedded image


A
668.88432





5655


embedded image


A
666.86838





5656


embedded image


B
671.88784





5657


embedded image


A
693.85057





5658


embedded image


A
719.88881





5659


embedded image


A
693.85057





5660


embedded image


A
679.82348





5661


embedded image


A
667.81233





5662


embedded image


A
712.8604





5663


embedded image


A
673.90378





5664


embedded image


A
659.87669





5665


embedded image


A
645.8496





5667


embedded image


A
631.82251





5668


embedded image


A
680.89547





5669


embedded image


A
716.88529





5670


embedded image


A
684.88372





5671


embedded image


A
672.87257





5672


embedded image


A
698.91081





5673


embedded image


A
686.89966





5674


embedded image


A
644.81839





5675


embedded image


A
658.84548





5676


embedded image


A
646.83433





5677


embedded image


B
732.92832





5678


embedded image


A
718.90123





5679


embedded image


B
730.91238





5680


embedded image


A
692.86299





5681


embedded image


A
690.84705





5682


embedded image


A
704.87414





5683


embedded image


B
687.93087





5684


embedded image


B
685.91493





5685


embedded image


B
673.90378





5686


embedded image


A
645.8496





5687


embedded image


B
699.94202





5688


embedded image


A
659.87669





5689


embedded image


A
674.84488





5690


embedded image


A
688.87197





5691


embedded image


A
686.85603





5692


embedded image


B
727.87507





5693


embedded image


B
699.94202





5694


embedded image


A
700.88312





5695


embedded image


A
660.86142





5696


embedded image


A
728.89644





5697


embedded image


A
660.81779





5698


embedded image


A
632.80724





5699


embedded image


A
648.80664





5700


embedded image


A
646.83433





5701


embedded image


A
646.7907





5702


embedded image


A
672.87257





5703


embedded image


A
674.88851





5704


embedded image


A
698.91081





5705


embedded image


A
712.9379





5706


embedded image


B
683.89899





5707


embedded image


A
706.93371





5708


embedded image


A
710.92196





5709


embedded image


A
684.88372





5710


embedded image


A
684.92735





5711


embedded image


A
671.88784





5712


embedded image


A
685.91493





5713


embedded image


A
685.91493





5714


embedded image


A
696.9385





5715


embedded image


A
670.85663





5716


embedded image


A
698.95444





5717


embedded image


A
710.96559





5718


embedded image


A
692.86299





5719


embedded image


A
686.94329





5720


embedded image


A
738.89864





5721


embedded image


A
694.92256





5722


embedded image


A
730.95601





5723


embedded image


A
724.95





5724


embedded image


A
718.94





5725


embedded image


A
732.97





5726


embedded image


A
729.93





5727


embedded image


A
731.94





5728


embedded image


A
733.96





5729


embedded image


A
720.96





5730


embedded image


A
698.95





5731


embedded image


A
684.93





5732


embedded image


A
696.94





5733


embedded image


A
720.92





5734


embedded image


A
660.91





5735


embedded image


A
658.89





5736


embedded image


A
710.97





5737


embedded image


A
734.94





5738


embedded image


B
746.96





5739


embedded image


A
732.93





5740


embedded image


A
694.92





5741


embedded image


A
730.91





5742


embedded image


B
692.91





5743


embedded image


A
704.92





5744


embedded image


B
718.94





5745


embedded image


A
664.85





5746


embedded image


B
694.92256





5747


embedded image


A
746.87791





5748


embedded image


A
706.93371





5749


embedded image


A
702.90183





5750


embedded image


A
690.89068





5751


embedded image


A
718.94486





5752


embedded image


A
727.73554





5753


embedded image


A
714.95384





5754


embedded image


A
712.9379





5755


embedded image


A
726.96499





5756


embedded image


A
755.78972





5757


embedded image


A
700.92675





5758


embedded image


A
702.94269





5759


embedded image


A
710.92196





5760


embedded image


A
761.75305





5761


embedded image


A
672.87257





5762


embedded image


A
686.89966





5763


embedded image


A
772.91615





5764


embedded image


A
728.94007





5765


embedded image


A
732.97195





5766


embedded image


A
718.94486





5767


embedded image


A
720.9608





5768


embedded image


A
730.95601





5769


embedded image


A
744.9831





5770


embedded image


A
723.87706





5771


embedded image


A
737.90415





5772


embedded image


A
735.88821





5773


embedded image


A
695.82288





5774


embedded image


A
709.84997





5775


embedded image


A
738.97614





5776


embedded image


A
726.96499





5777


embedded image


A
740.99208





5778


embedded image


A
714.95384





5779


embedded image


A
724.94905





5780


embedded image


A
708.94965





5781


embedded image


A
712.98153





5782


embedded image


A
710.96559





5783


embedded image


A
698.95444





5784


embedded image


A
712.9379





5785


embedded image


A
736.9602





5786


embedded image


A
698.91081





5787


embedded image


A
728.94007





5788


embedded image


A
753.00323





5789


embedded image


A
718.94486





5790


embedded image


A
700.97038





5791


embedded image


A
720.9608





5792


embedded image


A
698.95444





5793


embedded image


A
779.04147





5794


embedded image


A
767.03032





5795


embedded image


A
781.05741





5796


embedded image


A
738.97614





5797


embedded image


A
765.01438





5798


embedded image


A
726.96499





5799


embedded image


A
712.9379





5800


embedded image


A
724.94905





5801


embedded image


A
740.99208





5802


embedded image


A
755.01917





5803


embedded image


A
753.00323





5804


embedded image


A
669.82827





5805


embedded image


A
673.86015





5806


embedded image


A
700.92675





5807


embedded image


A
716.96978





5808


embedded image


A
743.00802





5809


embedded image


A
740.99208





5810


embedded image


A
767.03032





5811


embedded image


A
631.77888





5812


embedded image


A
683.85536





5813


embedded image


A
687.88724





5814


embedded image


A
671.84421





5815


embedded image


A
685.8713





5816


embedded image


A
685.8713





5817


embedded image


A
740.99208





5818


embedded image


A
753.00323









The present invention relates to novel HCV protease inhibitors. This utility can be manifested in their ability to inhibit the HCV NS3/NS4a serine protease. A general procedure for such demonstration is illustrated by the following in vitro assay.


Assay for HCV Protease Inhibitory Activity:




  • Spectrophotometric Assay: Spectrophotometric assay for the HCV serine protease can be performed on the inventive compounds by following the procedure described by R. Zhang et al, Analytical Biochemistry, 270 (1999) 268-275, the disclosure of which is incorporated herein by reference. The assay based on the proteolysis of chromogenic ester substrates is suitable for the continuous monitoring of HCV NS3 protease activity. The substrates are derived from the P side of the NS5A-NS5B junction sequence (Ac-DTEDWX(Nva), where X=A or P) whose C-terminal carboxyl groups are esterified with one of four different chromophoric alcohols (3- or 4-nitrophenol, 7-hydroxy-4-methyl-coumarin, or 4-phenylazophenol). Illustrated below are the synthesis, characterization and application of these novel spectrophotometric ester substrates to high throughput screening and detailed kinetic evaluation of HCV NS3 protease inhibitors.


    Materials and Methods:



Materials: Chemical reagents for assay related buffers are obtained from Sigma Chemical Company (St. Louis, Mo.). Reagents for peptide synthesis were from Aldrich Chemicals, Novabiochem (San Diego, Calif.), Applied Biosystems (Foster City, Calif.) and Perseptive Biosystems (Framingham, Mass.). Peptides are synthesized manually or on an automated ABI model 431A synthesizer (from Applied Biosystems). UV/VIS Spectrometer model LAMBDA 12 was from Perkin Elmer (Norwalk, Conn.) and 96-well UV plates were obtained from Corning (Corning, N.Y.). The prewarming block can be from USA Scientific (Ocala, Fla.) and the 96-well plate vortexer is from Labline Instruments (Melrose Park, Ill.). A Spectramax Plus microtiter plate reader with monochrometer is obtained from Molecular Devices (Sunnyvale, Calif.).

  • Enzyme Preparation: Recombinant heterodimeric HCV NS3/NS4A protease (strain 1a) is prepared by using the procedures published previously (D. L. Sali et al, Biochemistry, 37 (1998) 3392-3401). Protein concentrations are determined by the Biorad dye method using recombinant HCV protease standards previously quantified by amino acid analysis. Prior to assay initiation, the enzyme storage buffer (50 mM sodium phosphate pH 8.0, 300 mM NaCl, 10% glycerol, 0.05% lauryl maltoside and 10 mM DTT) is exchanged for the assay buffer (25 mM MOPS pH 6.5, 300 mM NaCl, 10% glycerol, 0.05% lauryl maltoside, 5 μM EDTA and 5 μM DTT) utilizing a Biorad Bio-Spin P-6 prepacked column.
  • Substrate Synthesis and Purification: The synthesis of the substrates is done as reported by R. Zhang et al, (ibid.) and is initiated by anchoring Fmoc-Nva-OH to 2-chlorotrityl chloride resin using a standard protocol (K. Barlos et al, Int. J. Pept. Protein Res., 37 (1991), 513-520). The peptides are subsequently assembled, using Fmoc chemistry, either manually or on an automatic ABI model 431 peptide synthesizer. The N-acetylated and fully protected peptide fragments are cleaved from the resin either by 10% acetic acid (HOAc) and 10% trifluoroethanol (TFE) in dichloromethane (DCM) for 30 min, or by 2% trifluoroacetic acid (TFA) in DCM for 10 min. The combined filtrate and DCM wash is evaporated azeotropically (or repeatedly extracted by aqueous Na2CO3 solution) to remove the acid used in cleavage. The DCM phase is dried over Na2SO4 and evaporated.


The ester substrates are assembled using standard acid-alcohol coupling procedures (K. Holmber et al, Acta Chem. Scand., B33 (1979) 410-412). Peptide fragments are dissolved in anhydrous pyridine (30-60 mg/ml) to which 10 molar equivalents of chromophore and a catalytic amount (0.1 eq.) of para-toluenesulfonic acid (PTSA) were added. Dicyclohexylcarbodiimide (DCC, 3 eq.) is added to initiate the coupling reactions. Product formation is monitored by HPLC and can be found to be complete following 12-72 hour reaction at room temperature. Pyridine solvent is evaporated under vacuum and further removed by azeotropic evaporation with toluene. The peptide ester is deprotected with 95% TFA in DCM for two hours and extracted three times with anhydrous ethyl ether to remove excess chromophore. The deprotected substrate is purified by reversed phase HPLC on a C3 or C8 column with a 30% to 60% acetonitrile gradient (using six column volumes). The overall yield following HPLC purification can be approximately 20-30%. The molecular mass can be confirmed by electrospray ionization mass spectroscopy. The substrates are stored in dry powder form under desiccation.

  • Spectra of Substrates and Products: Spectra of substrates and the corresponding chromophore products are obtained in the pH 6.5 assay buffer. Extinction coefficients are determined at the optimal off-peak wavelength in 1-cm cuvettes (340 nm for 3-Np and HMC, 370 nm for PAP and 400 nm for 4-Np) using multiple dilutions. The optimal off-peak wavelength is defined as that wavelength yielding the maximum fractional difference in absorbance between substrate and product (product OD—substrate OD)/substrate OD).
  • Protease Assay: HCV protease assays are performed at 30° C. using a 200 μl reaction mix in a 96-well microtiter plate. Assay buffer conditions (25 mM MOPS pH 6.5, 300 mM NaCl, 10% glycerol, 0.05% lauryl maltoside, 5 μM EDTA and 5 μM DTT) are optimized for the NS3/NS4A heterodimer (D. L. Sali et al, ibid.)). Typically, 150 μl mixtures of buffer, substrate and inhibitor are placed in wells (final concentration of DMSO ≦4% v/v) and allowed to preincubate at 30° C. for approximately 3 minutes. Fifty μls of prewarmed protease (12 nM, 30° C.) in assay buffer, is then used to initiate the reaction (final volume 200 μl).The plates are monitored over the length of the assay (60 minutes) for change in absorbance at the appropriate wavelength (340 nm for 3-Np and HMC, 370 nm for PAP, and 400 nm for 4-Np) using a Spectromax Plus microtiter plate reader equipped with a monochrometer (acceptable results can be obtained with plate readers that utilize cutoff filters). Proteolytic cleavage of the ester linkage between the Nva and the chromophore is monitored at the appropriate wavelength against a no enzyme blank as a control for non-enzymatic hydrolysis. The evaluation of substrate kinetic parameters is performed over a 30-fold substrate concentration range (˜6-200 μM). Initial velocities are determined using linear regression and kinetic constants are obtained by fitting the data to the Michaelis-Menten equation using non-linear regression analysis (Mac Curve Fit 1.1, K. Raner). Turnover numbers (kcat) are calculated assuming the enzyme is fully active.
  • Evaluation of Inhibitors and Inactivators: The inhibition constants (Ki) for the competitive inhibitors Ac-D-(D-Gla)-L-I-(Cha)-C—OH (27), Ac-DTEDVVA(Nva)-OH and Ac-DTEDWP(Nva)-OH are determined experimentally at fixed concentrations of enzyme and substrate by plotting vo/vi vs. inhibitor concentration ([I]o) according to the rearranged Michaelis-Menten equation for competitive inhibition kinetics: vo/vi=1+[I]o/(Ki(1+[S]o/Km)), where vo is the uninhibited initial velocity, vi is the initial velocity in the presence of inhibitor at any given inhibitor concentration ([I]o) and [S]o is the substrate concentration used. The resulting data are fitted using linear regression and to the resulting slope, 1/(Ki(1+[S]o/Km), is used to calculate the Ki value. The Ki* values (in nanoMolar) for some of the inventive compounds are in the following Table 4:











TABLE 4





Compound




number
structure
Ki*

















5619


embedded image


11





5652


embedded image


19





5705


embedded image


3





5724


embedded image


19





5731


embedded image


15





5753


embedded image


4





5754


embedded image


4





5755


embedded image


7





5775


embedded image


5





5781


embedded image


9





5793


embedded image


11





5796


embedded image


3.2









While the present invention has been described with in conjunction with the specific embodiments set forth above, many alternatives, modifications and other variations thereof will be apparent to those of ordinary skill in the art. All such alternatives, modifications and variations are intended to fall within the spirit and scope of the present invention.

Claims
  • 1. A compound, or enantiomers, stereoisomers, rotamers, tautomers, and racemates of said compound, or a pharmaceutically acceptable salt, or ester of said compound, said compound of the general structure shown in Formula I:
  • 2. The compound of claim 1, wherein R1 is NR9R10, and R9 is H, R10 is H, alkyl, aryl, heteroalkyl, cycloalkyl, alkyl-aryl, aryl-alkyl, alkenyl, or alkynyl.
  • 3. The compound of claim 2, wherein R10 is selected from the group consisting of:
  • 4. The compound of claim 1, wherein R2 is selected from the group consisting of the following moieties:
  • 5. The compound of claim 1, wherein R3 is selected from the group consisting of:
  • 6. The compound of claim 5, wherein R3 is selected from the group consisting of the following moieties:
  • 7. The compound of claim 1, wherein G is NH.
  • 8. The compound of claim 1, wherein Y is selected from the group consisting of:
  • 9. The compound of claim 8, wherein Y is selected from the group consisting of:
  • 10. The compound of claim 1, wherein the moiety:
  • 11. The compound of claim 10, wherein the moiety:
  • 12. The compound of claim 11, wherein the moiety:
  • 13. The compound of claim 1, wherein R1 is NHR10, where R10 is selected from the group consisting of:
  • 14. A pharmaceutical composition comprising as an active ingredient at least one compound of claim 1.
  • 15. The pharmaceutical composition of claim 14 for use in treating an infection of HCV.
  • 16. The pharmaceutical composition of claim 15 additionally comprising at least one pharmaceutically acceptable carrier.
  • 17. The pharmaceutical composition of claim 16, additionally containing at least one antiviral agent.
  • 18. The pharmaceutical composition of claim 17, still additionally containing at least one interferon.
  • 19. The pharmaceutical composition of claim 18, wherein said at least one antiviral agent is ribavirin and said at least one interferon is α-interferon or pegylated interferon.
  • 20. A method of treating an infection of HCV, said method comprising administering to a patient in need of such treatment a pharmaceutical composition which comprises therapeutically effective amounts of at least one compound of claim 1.
  • 21. The method of claim 20, wherein said administration is oral or subcutaneous.
  • 22. A method of preparing a pharmaceutical composition for treating an infection of HCV, said method comprising bringing into intimate physical contact at least one compound of claim 1 and at least one pharmaceutically acceptable carrier.
  • 23. A compound exhibiting HCV protease inhibitory activity, or enantiomers, stereoisomers, rotamers, tautomers, and racemates of said compound, or a pharmaceutically acceptable salt, or ester of said compound, said compound being selected from the compounds of structures listed below:
  • 24. A pharmaceutical composition for treating a hepatitis C virus (“HCV”) infection, said composition comprising therapeutically effective amount of one or more compounds in claim 23 and a pharmaceutically acceptable carrier.
  • 25. The pharmaceutical composition of claim 24, additionally containing at least one antiviral agent.
  • 26. The pharmaceutical composition of claim 25, additionally containing at least one interferon or PEG-interferon alpha conjugate (“pegylated interferon”).
  • 27. The pharmaceutical composition of claim 26, wherein said at least one antiviral agent is ribavirin and said at least one interferon is α-interferon or pegylated interferon.
  • 28. A method of treatment of a hepatitis C virus infection, comprising administering an effective amount of one or more compounds of claim 23.
  • 29. A method of treating hepatitis C virus (HCV) infection, comprising contacting HCV protease with one or more compounds of claim 23.
  • 30. The method of claim 28, wherein the HCV protease is the NS3/NS4a protease.
  • 31. The method of claim 30, wherein the compound or compounds inhibit HCV NS3/NS4a protease.
  • 32. A method of treating HCV infection, said method comprising administering to a patient in need of such treatment, a pharmaceutical composition which comprises therapeutically effective amounts of at least one compound, or enantiomers, stereoisomers, rotamers, tautomers, and racemates of said compound, or a pharmaceutically acceptable salt or ester of said compound, said compound being selected from the following:
  • 33. A compound of claim 1 in purified form.
FIELD OF THE INVENTION

This application is a divisional of U.S. application Ser. No. 11/065,647, filed Feb. 24, 2005, and claims the benefit of U.S. Provisional Application, Ser. No. 60/548,506 filed Feb. 27, 2004.

US Referenced Citations (6)
Number Name Date Kind
4461293 Chen Jul 1984 A
6894072 Arasappan et al. May 2005 B2
20050085242 Nishizawa Apr 2005 A1
20050085275 Hugunin Apr 2005 A1
20050197301 Njoroge et al. Sep 2005 A1
20050209164 Bogen et al. Sep 2005 A1
Foreign Referenced Citations (3)
Number Date Country
WO 0208244 Jan 2002 WO
WO 03062265 Jul 2003 WO
WO 03064456 Aug 2003 WO
Related Publications (1)
Number Date Country
20070093430 A1 Apr 2007 US
Provisional Applications (1)
Number Date Country
60548506 Feb 2004 US
Divisions (1)
Number Date Country
Parent 11065647 Feb 2005 US
Child 11602174 US