The invention relates to a set of lab-ware and a robotic handling system for use in a cell culture process in a biology laboratory system.
A process module for an automated biology laboratory system is disclosed in CN 104777321.
A machine for automated filling a plurality of microplates in a biology laboratory system is disclosed in U.S. Pat. No. 6,360,792.
An automatic chemical or biology sample analyzer is disclosed in U.S. Pat. No. 7,670,553.
A transferring device of sample racks for automatic chemical analysis is disclosed in JP-H01 1189561.
US 2016/0145555 A1 shows a system for facilitating biological communication between two or more cell culture devices. A fluid collection device comprises a tip that engages to an output port or an input port of a fluid device. A plurality of fluid devices are stored on a carousel.
US 2018/0044624 A1 shows a cell culture device including an incubator for accommodating a close-system culture container.
U.S. Pat. No. 7,883,887 shows an automatic cell cultivation operator comprising storage devices for storing cell cultures and lab-ware and a three-dimensional movable robotic arm to handle microplates and lab-ware.
US 2016/0201022 A1 discloses an automatic culture system comprising transfer means for transferring microplates for an automatic maintenance.
U.S. Pat. No. 8,652,829 B2 discloses an automated robot system for microcell culture maintenance.
Other microfluidic cell culture systems are known from U.S. Pat. No. 9,388,374 B2, US 2017/0145366 A1 or U.S. Pat. No. 9,057,715.
Cell culture is highly skilled but laborious and tedious, which means the labour cost is high. Furthermore, reproducibility may be low, because the workflows are difficult, complex, and may extend over many weeks. Therefore there have been efforts to automate cell culture.
Cells are cultured in plastic-ware (flasks, round dishes, bottles, multi-well plates) in incubators. To passage cells a typical procedure involves: pre-warming media, PBS, trypsin (stored in a fridge) and de-frosting any additives, such as foetal bovine serum (FBS), and any special additives (such as growth factors), which are stored in a freezer; getting fresh plastic-ware (fresh plates, serological pipettes, pipette tips); getting cells out of incubator into a flow hood (i.e. sterile conditions, although it is preferred to minimise time out of incubator); checking cells under a microscope; washing cells with PBS; getting cells off with trypsin, suspending, taking an aliquot and counting the cell concentration in a counting slide on a microscope; adding the appropriate amount of cells, and any media; and putting the cells back in the incubator. Many of the liquid transfers are done with serological pipettes, and the smaller volumes are done with micropipettes, with disposable pipette tips.
There are existing systems for automating cell biology. These systems are assembled from a variety of laboratory equipment components (liquid handlers, automated incubators, fridges, etc.), in various formats, from various vendors, that were generally not designed to work together. These are often assembled by bolting the devices on to a table or other machine bed. The devices are then integrated with 3D robotic arms.
An object of the invention is to provide lab-ware for using in a processing module of a biology laboratory system, which can work fully automatic for a long time.
A further object of the invention is to provide a robotic device for handling the lab-ware.
This object is attained with the invention specified in the claims, wherein each claim basically represents an independent solution of the above devined object.
The invention provides a set of lab-ware for cell culture, comprising two or more different components selected from: A plate comprising one or more processing wells in a regular arrangement; a plate suitable for holding or holding a plurality of pipette tips in a regular arrangement; a plate comprising compartments individually holding or suitable for individually holding a plurality of vials in a regular arrangement; a plate comprising two or more substantially rectangular wells in a regular arrangement; a lidded bottle for bulk supply of reagent; a plate comprising one or more compartments for holding reagent bottles, two or more of the compartments being in a regular arrangement; a plate having a single well; a plate comprising one or more storage wells holding reagents, being sealed by a foil and/or covered by a lid; wherein all of the two, three or more components have a uniform footprint. Compartments for holding a reagent bottle, preferably spanning a width of the plate so that no further compartments or wells are arranged next to the compartment in a width direction of the plate. Plates comprising one or more storage wells holding reagents are either sealed or comprise a lid. All of the two or more components may have substantially the same maximum width and do not exceed a maximum length in a direction orthogonal to said width. The invention comprises in particular the use of a set of lab-ware for a cell culture process in a biology laboratory system comprising more than three different components selected from the above mentioned plates. The number of components can be four, five, six, seven, eight or more. This results in a set of lab-ware that is all compatible with the same interfaces. This greatly reduces the complexity of automated systems and also ensures that only compatible lab-ware can be used in the system, thus reducing the likelihood of poorly tolerance lab-ware causing issues when being used in the system. The plate with the processing wells is defined by its outside dimensions (i.e. the footprint), and by positions of wells. Preferably there will be plates with one well, six wells, 12 wells, 24 wells, 48 wells, 96 wells, 384 wells, and 1536 wells. Other well numbers are possible. A plate for holding pipettes or a pipette tip box often holds 96 tips. However, other configurations are possible. For different sized tips, different sized boxes can be used. The vials normally hold 0.2-2 ml of liquid and can be cryovials. Other sizes of vials are known. A plate with compartments for holding bottles may have two compartments arranged next to each other width wise and two or three compartments arranged next to each other along the length of the tray, so that four or six bottles can be stored and moved in a 2×2 or 2×3 array. A plate with compartments for holding bottles may have two or more compartments arranged next to each other width wise. Several rows of such compartments may be provided. However, such rows do not necessarily have to extend along the entire length of the plate. Instead some compartments may be left to function or indeed configured to function as storage or reaction wells that either directly store reagents without the use of a further storage container or that are used for performing reactions. The lab-ware may include bottles that are not stored on plates/in trays. Such bottles may have a circular cross-section or a substantially rectangular cross-section having or partially having said maximum width and not exceeding said maximum length. The sealed storage wells may be sealed, in a hermetical or at least fluid tight manner by a film that is attached to or close to a top edge of the well or of the entire plate. The film may have a breaking strength or features such as scored features that allows it to be penetrated by a plastic disposable pipette tip. Preferably one or more of the two or more components comprise a portion that is width-wise narrower than a portion defining the maximum width of the respective component, wherein the width-wise narrower portion is located above or below the portion defining the maximum width. This allows for adaptable ways of holding or handling the lab-ware. The narrower portion may be formed by a narrowing that is symmetrically applied at both side walls of the component. Preferably the narrower portion is formed by a channel extending along a side wall of the component. This allows the footprint of the lab-ware to be unchanged whilst allowing the holding or handling of the lab-ware. Preferably said narrower portion extends along the entire length of the side wall or is formed by two narrower portions that extend towards each other from opposite lengthwise ends of the sidewall and that extend insufficiently far along the side wall to meet. Such an arrangement allows for two holding or handling means to be used simultaneously on an item of lab-ware. This is useful for handing-off between handling devices, or for transferring an item of lab-ware to a plate holder on a storage rack that uses the same gripping interfaces. Preferably one or more of the two or more components comprise a portion that is width-wise narrower than a portion defining the maximum width of the respective component, wherein the widthwise narrower portion is located above or below the portion defining the maximum width. The width-wise narrower portion may be a groove in the side walls. Alternatively the narrower portion may be arranged on the side wall(s) such that the portion of the side wall(s) that defines the maximum width forms a rail or guide rail that protrudes from the remainder of the side wall. Preferably part of or all of one or both of two short edges of a side wall or of both side walls of the component is configured such that a width of the component at one or both of longitudinal ends of the component is smaller than and gradually increases towards the maximum width with increasing distance from a longitudinal front face of the component. The part or all of the short edge may be a chamfer or a rounding of the short edge. This modification of the edge needs to be sufficient for centering the component within an aperture, for example within a door leading into or out of a lab module. The modification may apply to the entire height of the edge. Alternatively or additionally the modification may only be applied to a part of the edge that, in the absence of the modification would define the maximum width of the component. In particular for components that comprise side wall portions that are narrower than the maximum width the edge modification may not be applied to the narrowed portion. Further alternatively or additionally the edge modification may be applied to the narrowed portion, for example to help center the component relative to a gripping device intended to travel down the narrowed portion. An arrangement in which the edge modification is only applied to the narrowed portion is also envisaged, for example for use in configurations in which no edge modification are needed for the widest portions of the side wall, for example because the desired component centering effect is achieved otherwise, say by chamfers on edges of apertures of lab modules that are to be traversed by the component. Preferably the lab-ware further comprises one or more recesses in or protrusions on a side wall, an underside or an end face. Preferably one or more recesses and/or protrusions are provided on side walls of the component in a mirror or point symmetric arrangement and/or wherein one or more recesses and/or protrusions are provided on end walls of the component in a mirror or point symmetric arrangement. Preferably a width and/or height of said recesses decreases with increasing depth of penetration of the recess into the component or wherein a width and/or height of said protrusion decreases with increasing distance from a surface carrying the protrusion. Wherein the recesses or protrusions are conical, pyramidal, hemispherical or have any other tapering cross-sectional arrangement. Preferably at least one of the two or more different components of lab-ware is a said: plate comprising compartments individually holding or suitable for individually holding six or more vials arranged next to each other in a width direction of the plate; plate comprising compartments for holding reagent bottles, two or more of the compartments arranged next to each other in a width direction of the plate; plate comprising a compartments for holding a reagent bottle, the compartments spanning a width of the plate so that no further compartments or wells are arranged next to the compartment in a width direction of the plate; wherein a base of said compartments comprises and engaging means configured to prevent rotation of a bottle or vial within the compartment about a vertical axis when engaged with a matching engagement means at a bottom surface of said bottle or vial. The engagement means may be a polygonal, e.g. triangular, square, pentagonal or hexagonal protrusion on the base surface of the compartment. Any vials or bottles used in the compartment may have a corresponding polygonal recess for receiving the protrusion and sized such that the recess is not free to rotate substantially about the protrusion. Preferably the lab-ware further comprises one or more bottles and/or vials comprising engagement means on a bottom surface thereof, said engagement means suitable for engaging with said engaging means on the base of said compartment. Preferably the lab-ware further comprises one or more bottles and/or vials having a non-circular cross-section and a maximum size larger than a minimum inner dimension of a compartment for holding said bottle or vial. Preferably one or more or all of said components comprise means for identifying said components or reagents stored therein. The identification means may be a one or two dimensional bar code, an RFID tag or a relief structure for engaging by a feeler. In a further embodiment there is provided a robotic device for manipulating lab-ware in a cell culture process, comprising: at least two elongate gripper fingers arranged at a distance from each other, the gripper fingers comprising protrusions or recesses for engaging matching protrusions and recesses on lab-ware to be handled. This enhances a grip on a piece of lab-ware and also ensures correct alignment as the recesses and protrusions will align the lab-ware when gripped. Preferably there is provided a system comprising a robotic device and lab-ware as discussed above. The robotic device can be driven electrically. The system comprising a set of modules wherein one module is a process module can have a controller, which can be a computer for controlling the robotic handling device and drivers for rotating storage devices. Preferably there is provided a the system comprising lab-ware and a robotic device with at least two elongate gripper fingers spaced apart by said maximum distance from each other or, for lab-ware spaced apart by a width of the narrower portion. Preferably there is provided a system comprising a robotic device and lab-ware, wherein the robotic device further comprises a reader suitable for reading the identification means provided with the lab-ware. Preferably there is provided a robotic device or a system, wherein said gripper fingers are moveable between a spacing larger than said spacing and said spacing. Preferably there is provided a system comprising lab-ware, and further comprising a store module in which the lab-ware is stored, the store module comprising a door for access to the lab-ware the door having a height greater than the height of the lab-ware. This ensures that the lab-ware can pass through the interface. The height of the door can vary depending on the module, for example, the fridge could have a taller door to house bottles. For deep-well plates, the height of the door should be 4 cm, for a bottle, the height of the door should be 8 cm, for pipette boxes the height of the door should be 10 cm. However other heights are possible. The door can open to height as required, e.g. if using a vertically opening door. In a further embodiment there is provided a bottle for use in a biology lab system, where: the bottle has a volume of 50-500 ml and a substantially rectangular footprint of a microplate, such that the bottle can be stored in slots, and handled with the grippers, configured to respectively store and/or handle microplates. Although rectangular is used, the bottle can have rounded corners. Furthermore, the bottle can have two parallel sides and a curved front or back surface. In a further embodiment there is provided a gripper plate or a tray preferably for handling bottles in a biology lab system, the tray having a footprint that corresponds to the footprint of an SLAS microplate, and further comprising recesses configured to hold 20 to 100 ml bottles, such that the bottle can be stored in slots, and handled with the grippers, configured to respectively store and/or handle SLAS microplates.
Preferably the robotic handling means comprises a gripper plate that extends at least between the first and second sides of the lab-ware. This provides a plate that the lab-ware sits on. Therefore the indentations and protrusions extend vertically between the plate and the sides of the lab-ware. Preferably the gripper plate further comprises positioning means upwardly extending toward to the lab-ware when in the handling position, the positioning means being shaped to orientate the lab-ware on the gripper plate. This provides a further protrusion that acts as a frame in which the lab-ware sits to ensure that the lab-ware does not slide on the plate. Preferably the positioning means are tapered or sloped. Like with the indentations and protrusions, this provides further alignment means to orientate lab-ware in the correct position. Preferably the positioning means extend along an outside edge of the first and/or second sides of the lab-ware when in the handling position.
These and other features of the present invention will now be described in further detail, purely by way of example, with reference to the accompanying drawings, in which:
Referring to
The process module 120 has a rotating element 108 or ‘turntable’. However, in the process module 120, the turntable 108 can be a single surface and not have various vertical racks 210. Instead the top surface of the turntable 108 forms a working deck 330 or at least part of a working deck 330. The turntable working deck has a number of slots for lab-ware, and can be aligned to functional modules (e.g. the liquid handling robot) in the process module, and to an interface where plates are transferred horizontally onto the turntable working deck from another module. The turntable working deck thus functions as a very compact, unified and simple means for transporting plates into the module, and between multiple functional elements.
In the process module 120 there is provided a liquid handler robot 340. The liquid handler 340 is positioned above the turntable 108. In the illustrated embodiment, the liquid handler 340 does not occupy the whole area above the working deck 330 as can be seen in
As previously discussed, the turntable 108 and thus the rotating working deck 330 in the process module 120 has radially arranged plate slots 110 that can hold various articles, such as cell culture plates 116, or plates carrying consumables such as pipette tips and media bottles. In
The microscope 342 is commonly used for monitoring the state of the cells (e.g. confluency), so as to know the growth rate of the cells, and when they need to be passaged next, or where there are enough cells for another process to start. In one embodiment, the microscope 342 is further able to detect the pH of the medium (which carries a dye that acts as a pH indicator), and/or to detect gross microbial contamination (which will make the medium acidic (more yellow) and cloudy).
In an alternative embodiment the microscope 342 is indexed to the turntable 108, or the microscope 342 is positioned to see an area greater than that of the plate 116 or plate slot 110 required, and be programmed to ignore the features outside of this view, or use these to compensate for a mis-positioning in the plate 116.
An optional decapper robot 344 is shown and provided in a position above a plate slot 110 when the turntable 108 is rotated to the relevant position. The decapper 344 de-caps vials 321 and bottles 323. Vials 321 and bottles 323 that needed to be de-capped have their plate slot 110 rotated to the de-capping position under the decapper 344 via the turntable 108. The turntable 108 can then rotate the de-capped plate slot 110 to the position where they would be required for the liquid handling 340 (e.g. a pipetting robot).
An optional de-lidding station 346 is also shown and is provided for de-lidding plates 116, e.g. cell culture plates. In the art, consumables such as pipette tip boxes or pipette tip stacks, or plates, including microplate reservoirs, are stored on the deck of a liquid handler. In the system described herein, it is desired to provide the process module with random access to a large range of consumables, similar to what a human would have access to in a lab. To this end, the process module is interfaced to an automated incubator, an automated fridge, and an automated plastic-ware store, so that consumables or cell culture plates can flexibly be shuttled to and from the process module as required. In order to enable this, it is desirable for the system to be able to lid and de-lid e.g. pipette tip boxes and microplate reservoirs. In the art, pipette tip boxes have lids adapted for human use—they are hinged to the box, and are somewhat compliant, being commonly made of a polymer such as polypropylene. Microplate reservoirs, if they have lids, also have somewhat compliant polymer lids. The de-lidder may also de-lid pipette tip boxes and other lab-ware, such as microplate reservoirs, so long as they are provided with lids that can be handled by the de-lidder. Such lids are known in the art for cell culture plates, and are generally required to be rigid, being made of a material such as polycarbonate. The lids may further advantageously be glossy, as is known in the art. The de-lidder 346 can be positioned over one of the plate slots 110 carrying a plate on which a lid needs to be removed by rotating the turntable 108.
Therefore, as is shown in
In an example, the working deck 330 holds a cell culture plate 116 in a plate slot 110, a rack with vials 320 (e.g., vials containing reagents, or growth factors) and bottles 322 (e.g., bottles containing cell culture medium, or trypsin), pipette tip boxes 324, and with two different sizes of pipette tips. The working deck 330 may be stationary while the liquid handler 340 carries out liquid transfers, or it may rotate to conveniently present various plates or other consumables, at various times, to the liquid handler 340. There might additionally be additional articles, such as a second cell culture plate 116, in the positions under the microscope 342, de-lidder 346 or de-capper 344. Given that the mechanisms for the microscope 342, de-lidder 346 and de-capper 344 are positioned above the plate slots 110 on the working deck 330, in most cases this would prevent the liquid handler 340 from reaching articles in those plate slots 110. Articles in plate slots 110 under the microscope 342, de-lidder 346 or de-capper 344 can be exposed to the liquid handler 340 when required by rotating the working deck 330.
With eight radially arranged plate slots 110 for cell culture plates 116 with an SLAS (Society for Laboratory Automation and Screening) microplate footprint, the turntable 108 for the working deck 330 can be small, e.g. less than 80 cm in diameter. This allows the process module 120, or other modules 100 with similarly sized turntables 108 to be compact and easy to fit through doors, such as doors of a laboratory cleanroom. This makes installation of the system 99 generally convenient, fast and economical, since the modules can be built in a factory, then assembled together on-site.
A carousel 108 with a racking system 210, such as the carousel 108 of an incubator 124 shown in
An external solid waste receptacle 348, with a robotic grabber 160 is provided in communication with the process module 120. Solid waste from the process module 120 (e.g., used cell culture plates, empty pipette tip boxes, empty bottles) can be transferred to solid waste 348. The solid waste 348 does not need to be modular sized 100 as this can have a smaller capacity and its contents will likely need to be emptied into bags and carried out of the laboratory. A sealing means 311 formed by a piece of pipe connects the modules 100, 120 with an air-tight connection. The sealing means 311 can be used for firmly connecting the two modules 100, 120 together.
Preferably, HEPA filtered air is blown through the process module 124. As the air is blown horizontally, this can help minimize particles falling into open cell culture plates 116, or reagent vials or bottles. HEPA air might be recirculated through the system 99, via a HEPA filter, as a way of driving down particulates, and reducing exhaust from the system 99. Recirculation of air might be favoured during handling steps where it was preferred not to exhaust air to the room, e.g. when for systems handling lentivirus. In some systems, it may be preferred not to recirculate the air.
In one embodiment the process module 124 further has some means of periodic sterilization, such as hydrogen peroxide vapour, ozone, ethylene oxide, or UV lights, such as UV LEDs, positioned to irradiate the relevant surfaces.
Such a configuration can be used in particular places, for example on the working deck 330 of the process module 120. This requires either additional grooves in the wall of the channel (e.g.
Chamfers 362 are provided on a top edge of the side slots 152 at the mouth of channel 156. These chamfers 362 can assist with aligning a plate 116 that is placed into a plate slot 110 from a vertical position. The above features such as the chamfers 362 and side slots 152 providing varying widths for the channel 156 can be combined with those of
Referring to
Alternatively, the engagement means 362 could be a recess, a press-fit, or a spring, which engages the lab-ware 300. The engagement means 362 can provide feedback (e.g., read by the motor driving the gripper 164), when the means 362 is initially engaged by the lab-ware 300, and further feedback when the lab-ware 300 is fully engaged in the plate slot 110. Such a graduation in signals depending on the location of the plate 116 in the slot 110 can be done by various means such as impedance strips or by proximity sensors placed on the front and back edges of a plate 116 that are trigged by contact with the engagement means 362. Alternatively, a variance in the shape of the plate 116 from the front edge to the back edge can result in a different force being exerted on the engagement means 362. For instance, the plate can be narrower at the front and therefore the engagement means 362 is depressed less than a wider rare of the plate 116 that provides a larger depression of the engagement means 362. This would require a consistent alignment of the plate 116 and therefore corresponding engagement means 362 can be provided at the mouth to the plate slot 110.
A sample process is described with reference to
Whilst the cells are growing, the cell culture plate 116, with nutrient medium, is in the incubator 124. The medium needs to be changed, e.g., due to waste products having built up, or nutrient has become depleted. In
Pipette tips 324, and cell culture medium (in a deep well plate 364) is transferred from another store 122 into target plate slots 110 on the rotating working deck 330, in a similar way, by vertical travel of a robotic device 160, rotations of the carousel 108, and aligning the relevant target plate slots 110 on the working deck 330 with the door 130 of the relevant store 122. In
The liquid handling robot 340 picks up fresh disposable sterile pipette tips 324. Disposable pipette tips are used to avoid contaminating either the medium or the cells, either with microbes, or extraneous chemicals from a previous pipetting step. The liquid handler 340 aspirates spent medium from the plate, and discards it to waste. The pipette tips 324 are then discarded, and fresh pipette tips 324 are picked up. The liquid handler 340 then aspirates fresh medium from the reservoir (e.g. the deep well plate), and dispenses the medium into the plate with the cells. The plate may be a single well plate, or a multi-well plate, in which case the pipette dispenses into the rows of columns of wells repeating the operation until all the wells have been filled with fresh medium. The plate 116, with fresh medium, is re-lidded: the rotating working deck 330 is rotated until the plate 116 is aligned with the de-lidder 346 which is storing the lid which was removed from that plate 116, and the de-lidder 346 re-lids the plate 116, which is then returned to the incubator 124. If they are not required any more, the medium and the pipette tips are returned to storage 122.
A further illustrative sample process is described with reference to
1. the plate 116 with the cells, which will typically be approaching confluency
2. a box of 1 ml pipette tips 324. The tips may preferably be wide-bore tips.
3. a deep well plate 364 containing PBS (Phosphate Buffered Saline) plus EDTA (or an equivalent reagent)
4. a deep well plate 364 containing trypsin (or an equivalent reagent)
5. a deep well plate 364 containing fresh medium
6. two fresh plates 116, which the cells will be transferred to.
An initial position of the materials is shown in
In
Residual medium (including serum), is then washed away. The liquid handler 340 picks up fresh pipette tips, and aspirates PBS, and pipettes it into wells on the plate 116. The PBS is then removed and discarded. This rinse may be repeated to further reduce the residual amount of medium or serum.
Next, trypsin is added. It will be noted that in the
The liquid handler 340 picks up fresh pipette tips, then the working deck 330 is rotated, so that the liquid handler 340 aspirates the required (typically minimal) amount of trypsin to the relevant plate, the working deck 330 is again rotated so that the plate 116 with the cells is back in a position that is conveniently oriented for the pipetting head to pipette into, and adds the trypsin to wells in the plate. The plate is then incubated for a few minutes, while the trypsin detaches the cells. In some methods, the plate is incubated at room temperature, which may be accomplished by leaving it on the rotating working deck 330. In other methods, the plate is incubated at 37° C. while the cells are being detached—this can be accomplished by transferring the plate back to the incubator 124. Various methods can be used for choosing the incubation time with trypsin, e.g., the incubation time may be predicted based on past results with a given cell line. Alternatively, automated microscopy may be used to monitor the detachment of the cells.
Once the cells are sufficiently detached, the liquid handler 340 adds medium (with the required rotations of the working deck 330, as described above for trypsin), typically with serum, to quench the trypsin. Alternatively, there are modified trypsins, or similar reagents, known in the art, that do not require quenching with serum. The liquid handler picks up fresh pipette tips, aspirates the required amount of medium, and pipettes it into the wells containing the detached cells. The detached cells are re-suspended, e.g., by gently pipetting up and down to mix, e.g. with wide-bore pipette tips (to reduce shear stress on the cells).
The required number of cell are then transferred to the two fresh plates 116, to achieve the target confluency in the freshly seeded plates, which may be e.g. 20% confluency.
Various methods can be used to determine the volume of cell mixture to be transferred. For example, the cells may be counted in an automated cell counter or the number of cells may be estimated based on the confluency just before passaging. In any case, the pipetting head aspirates the required volume of cell suspension (containing the desired number of cells), and seeds the cells into the fresh plates. The wells in the fresh plates may be topped up with fresh medium, if required, to reach the correct amount of medium per well. The freshly seeded plates are then re-lidded, and returned to the incubator. The old plates are discarded, and the medium, PBS and trypsin may be returned to storage in plate hotels in the relevant carousels 108 as shown in
In the handling strategy described for simplicity, all the materials required (the fresh plates, the PBS, trypsin and medium, the pipette tips), are all loaded onto the rotating working deck 330 at the beginning of the process. Other sequences of movements are possible. For instance, the pre-warmed liquids may be loaded onto the working deck 330 only when they are required.
As described previously, there is a requirement for automation equipment that handles more complete and integrated workflows. At present, this requires making equipment that handles a diverse set of legacy human-optimized lab-ware that is difficult to handle in an automated system. Provided here is a set of lab-ware, and methods for using, that accomplish end-to-end automation of complex cell culture workflows, using substantially only lab-ware that conforms to an SLAS microplate footprint, thereby adapting the workflows into a format that is readily handled by automation equipment. Also provided is a universal format, for robotic handlers, racks, slots etc., and stores conforming to this format, for handling the lab-ware set.
As discussed above, the lab-ware with a footprint compatible with a microplate footprint 116 are to be grabbed by a grabber arm 164 and more particularly by gripper fingers 168. Therefore, in order to have one robotic device 160 to access all the storage modules (i.e. the fridge 128, freezer 126, the plastic-ware and room temperature reagent 122, etc.) a standardized form for the plates 116 is used. Microplates or Microtiter plates 116 are often used in cell culture processes.
As described herein, the terms ‘microplate’ and ‘plate’ are used interchangeably, with the intention of meaning ‘lab-ware with an SBS/SLAS microplate footprint’, and comprising a set of lab-ware including microplates, microplate reservoirs, single well cell culture plates, multi-well cell culture plates, microtiter plates, bottles, pipette tip boxes, adaptor racks for vials and/or botties that all use the same base footprint so they can all be operated within the modules 100 by the same robotic device handlers 160. Furthermore, these lab-ware can all have a microplate base footprint for ease of compatibility.
Referring to
A microplate 116 (or similar) is shown sat on rails 312 of the rack 310 in
The vertical stands 314 can be arranged such that each column can be placed side by side in rows to form a row of racks 320, rails 312 extend from both sides of the vertical stands 314. This allows a compact rack 320 as each vertical stand 310 can form a part of the rack 310 for a further rack 310. In this arrangement, the robotic device 160 would need to be able to move not only in a single horizontal dimension, i.e. toward and away from the rack 310, but also in a second horizontal dimension, left and right to access an adjoining rack 310, thus z and y axes. Where a rack 210 is arranged on a carousel 108, it would not be possible to use a single vertical stand 314 for two racks 210 as the racks are arranged in a radial manner.
A bottle tray 322 is shown in
Two examples of large bottles 326, 327 are shown in
The extended portions 328, 329 and/or bottles 326, 327 can be shaped such that they have a horizontal circular cross-section, i.e. form an outline of a circle when viewed from above. This allows for a conventionally shaped bottle which can still be held in the rails 312. Alternatively they can have flat sides such that the extended portions 328, 329 extend along the length of a rail 312 and thus provide a larger supported surface area for suspending the bottles 326, 327. The bottle can optionally be circular or have a similarly flat sided shape, where a more rectangular shaped bottle (when viewed from the top) will be a more efficient use of space and as is often used in cell culture operations.
This all results in a versatile racking solution whereby specific sized plate slots 110 need not be provided for differing lab-ware, but instead, the plate slots 110 are universal to allow many types of lab-ware to be housed in them. Furthermore, in some embodiments, the plate slots 110 do not need to be specifically sized for particular height contents, but instead, the plate slots 110 can allow for an item of lab-ware 300 that is taller than the set of rails 312 as these do not encroach on the height of the plate slot 110 and thus rack 210, 310.
The racks 210, 310 as previously described are situated on a carousel 108. In some cases, the racks 210 can be fully removed from the carousel 108 and loaded with a new rack 210, 310. This can allow new sets of plastic-ware 300 and plates 116 to be preloaded onto a rack and replaced. Access to the rack 210, 310 can be through a user accessible door. The height of the door would need to be equal to that of the rack 210, 310 that is removed or placed in the module 100. To avoid contamination or a change of the environment of the module, the replacement of a rack 210, 310 can be combined with a load-lock. In some cases, it is only modules 100 used for plastic-ware storage or storage at room temperature that can be accessed for rack 210, 310 switching.
A carousel 108 has been described in the singular for each module 100. However, a plurality of rotating disks can be provided to form a carousel to hold a rack 210, 310. For instance, a bottom turntable and top turntable can be provided with space for a rack 210, 310 to sit between. In some embodiments, rows of plate slots 110 sit on independent carousels 108 that rotate independently in the same module 100.
When researchers are culturing large numbers of cells, they will use flasks for the larger quantity. In contrast, plates are used when users want multi-well plates, for doing several cultures or experiments in parallel. Single well plates can be provided that have a large liquid surface area, e.g. a surface area of 77 cm2, similar to T75 flasks. Whilst these would be inconvenient and unconventional for humans to use, single well plates can be used by a robotic device 160. This will simplify the mechanical handling in an automated system.
In the vial plate 320, the bottle tray 322, the pipette tip tray 324 and the large bottle 326, the gripper fingers 168 all grip the of the lab-ware 300 above the footprint that sits on the rails 312. Notably, when placed on the rack 310, there is sufficient space between the vertical stands 314 and the side of a plate 116 or other piece of lab-ware 300 for the gripper fingers 168 to be able to fit. This is because the footprint of the lab-ware 300 (or the extended portions 328, 329 in the case of the large bottles 326, 327) is wider than the width between the sides of the lab-ware 300. In the case of the large bottle 327, as the extended portion 329 sits on the rails 312, the gripper fingers can instead grab the bottle 327 at a position lower than the extending portion 329.
The described system handles cell culture plates 116, liquid media (which generally come in bottles 323, 326, 327), liquid additives (such as growth factors) that come in e.g. 2 ml vials 321, sample plates 116 (for storing samples taken from the cells), pipette tips (in pipette tip boxes 324), etc. All of these different objects can be handled differently by the same system 99 using the robotic device(s) 160. This results in an automated cell culture system 99 that is highly autonomous for prolonged operation. This allows the system to handle complex workflows.
Referring back to
The vials normally hold 0.2 to 2 ml of liquid. They are often screw capped, although other arrangements are possible. The vials can be 0.2-2 ml cryovials.
Pipette tips may commonly be stored in space-saving stacks, or magazines, because they take up a large amount of space, and because a system 99 uses such a large quantity of pipette tips. However, it is advantageous to have a range of tips available, such as 10 ul, 100 ul and 1 ml tips. It may further be advantageous to have other tips, e.g. wide-bore 100 ul and 1 ml tips, and aerosol resistant versions of those tips. If the tip boxes 324 were pre-loaded onto a deck, or if there were magazines for the boxes, this flexibility would require a large number of slots 110 or magazines. This may require a large or complex deck. Therefore, while handling tips in single boxes 324 appears to use a large amount of limited space, it actually achieves good occupancy of the system 99 because of the flexibility and less downtime by simplifying the mechanics. Less human interaction is also required to change tips when required. A variation of these embodiments can be adopted depending on the requirements of the system 99.
The various lab-ware 300 can have computer readable means such as barcodes, RFID or NFC chips that allow the type and configuration of the trays or plates to be logged on a system. The reader can be present on the robotic device 160 to detect the tray or plate when selecting this.
Cell culture plates typically require 10-15 ml of medium. This is typically pipetted with 15-20 ml serological pipettes, from 100-500 ml bottles of medium. Serological pipettes were originally designed for manual use, and are typically rigid, being made of a polymer such as polycarbonate, and often have an inside diameter that is widest at the middle of the length of the body, and narrower at the tip, and also narrower at the end that connects to a mechanism for applying air pressure to aspirate or dispense liquid. This conventionally requires an automated system to handle bottles and serological pipettes, which tends to result in complex and failure-prone robots. In contrast, conventional pipetting robots are highly mature and reliable, but typically the heads only handle up to 1 ml, which would require a long series of pipetting steps to transfer 10-15 ml of medium. Pipetting robots generally have a piston, and often work on air displacement. They use disposable pipette tips, which are somewhat compliant, being generally made of a polymer such as polypropylene, so as to be able to fit sealingly onto the outside of the pipette ‘cone’. Pipette tips have a substantially greatest inside diameter where they fit onto the pipette cone.
It is also noted that a deep well plate 116 can be used as a media store vessel, instead of a bottle 323, 326, 327. Deep well plates can be used in the present system and will simplify handling in an automated robotic system 99. Further, deep well plates 116 can be sealed by a film (to prevent liquid leaking during shipment), which may be ruptured by the pipette. Alternatively the lid of the plate might seal, or there might be a gasket. A 96 well plate, with 2 ml wells, can hold 192 ml of medium, similar to a bottle, in a space-efficient format. A deep well plate, unlike a bottle, but similarly to a trough reservoir, is accessible to a multi-channel pipette head. An 8 channel pipette head with 1 ml pipettes, can pipette 8 ml at a time from a deep well plate, so filling a single well plate with up to 16 ml of media only requires 2 pipetting steps. Although using a multi-channel pipette head to fill plates with media initially appears inefficient, using deep well plates as high volume liquid reservoirs, and pipetting with a multi-channel pipette, greatly reduces mechanical complexity in an automated system, is space-efficient allows efficiency, and is flexible and therefore favoring high occupancy (i.e., efficient use) of the system. A single well plate is herin used as a robot-friendly substitute for a T75 flask. A T75 flask is useful for maintaining cell stocks, having a large a growth area of 75 cm2, and while humans prefer to use flasks, they are robot-unfriendly. On the other hand, while single well plates exist, they are almost never used as they are awkward for a human to use—it is easy to tilt them and spill media. However, single well plates are robot-friendly, and can have a growth area of 75 cm2 or greater. In an automated system, it may further be advantageous to decrease the height of the plate, e.g., to 15 mm or less, or 10 mm or less, to increase storage density. This would be normally be disadvantageous for human use, as it would make it easy to spill liquid by tilting the plate.
In an example for using the system, the user loads the system with the liquids required by the system 99. The liquids may be transferred from a bottle 326, 327 into deep well plates (e.g., by an automated liquid handler or dispenser), or they may have been supplied in deep well plates by the supplier as discussed above. The user may load deep well plates containing medium, PBS (Phosphate Buffered Saline), and trypsin into racks 210, 310 in the carousel 108 of e.g., the fridge 128 of the system 99. When the system 99 is ready to passage cells, the robotic device 160 in the fridge 128 retrieves media, PBS and trypsin from racks 210, 310 in the fridge 128, and passes them to empty racks 210, 310 in the incubator 124 for 5 minutes to warm up. After 5 minutes, the system transfers a box of 1 ml pipette tips 324, and at least one fresh cell culture plate 116, onto the working deck 108. The robotic device 160 of the plastic-ware store 122 retrieves a box of tips 324 from a slot 110 in the carousel 108 and passes it onto a slot 110 on the working deck 108, which has been rotated to align with the door 130 of the plastic-ware store 122, where the tip box 324 is passed out, and also passes out a fresh tissue culture plate 116 in a similar manner. The working deck 108 then rotates to align the slots 110 that will receive the PBS, media, and trypsin, to the door 130 of the incubator 124, where the robotic device 160 in the incubator 124 passes those liquids (in their deep well plates 116), onto the appropriate slots 110 on the turntable 108. The robotic device 160 then passes out the plate 116 with the cells that need to be passaged.
Referring to
In general, the interface comprises mating ‘lock and key’ features on the handler and lab-ware. The features may be e.g. bevelled or conically shaped, so as to align the lab-ware onto the handler as it is picked up, being able to correct for a few millimetres of mis-alignment. The handling interface may further allow lab-ware to be held more securely. The features may further allow the system to detect and reject incorrectly dimensioned lab-ware, which does not carry the handling interface.
In
The upper and lower surfaces of the groove 370 restrict vertical movement of the plate 116 relative to the gripper finger 168. The gripper fingers 168 do consequently not only have to rely on a horizontal force to handle a plate 116, but the plate is also constrained in a vertical direction. Therefore the likelihood of dropping plates 116 is reduced. An equivalent pair of grooves 370 can be provided from the opposite end of the plate 116 to allow gripper fingers 168 associated with a robotic device 160 to handle the plate 116 from both sides and be able to hand-off the plates 116 to one another.
Alternatively, the grooves 370 could be enclosed on the sides, or open on a lower surface. Different shaped grooves 370 could also be provided, for instance, they could be square or circular in cross section. Instead of the gripper fingers 168 aligning into a groove 370, the feature could be reversed so that a flange on the lab-ware 300 aligns into a bevelled groove in the gripper fingers 168 or on a rack 210.
In
Corresponding conical or pyramidal protrusions 372 and conical or pyramidal indentations 374 are provided on the gripper finger 168 on the other side of the plate 116. The protrusions 372 and indentations 374 do not need to be horizontally aligned. Providing the protrusions and indentations at two different vertical heights ensure that only plates that are orientated the right way up, for instance will be handled. Furthermore, if the protrusions 372 and indentations 374 are not horizontally aligned across the width of the plate 116, then the plate 116 will not be able to rotate about the indentations. In the
Other shapes instead of conical or pyramidal could be used. For instance semi-circular protrusions 372 and indentations 374 could be envisaged. Any number of protrusions 372 and indentations 374 could also be provided as desired. For instance there need not be protrusions 372 and indentations 374 on both gripper fingers 168.
Referring to
Referring to
The feedback means 378 in the plate slot 110 can provide mechanical feedback, i) when the lab-ware 300 has begun to engage the plate slot 110, ii) that the lab-ware 300 is fully engaged, and iii) that the lab-ware 300 is in the correct orientation, and carried the correct handling interface. The feedback means can be in the same manner as describer earlier with reference to
The feedback would be reversed when the operation was reversed i.e., when a robotic device 160 is removing the lab-ware 300 from the plate slot 110. Each of the plate slots 110 on the working deck 330 or in the racks 210 can have these features. In one embodiment one or more or all of these features are combined with the engaging means 362 described with reference to
The plate 116 and gripper fingers 168 of
Referring to
The two types of features, grooves 370 and the protrusions 372 and indentations 374 can be combined in one interface or plate 116.
The cone mating of the protrusions 372 and indentations 374 will tend to self-align, even if the plate 116 is a few millimetres out of alignment with the gripper fingers 168. Both of the discussed mating features (grooves 370 or cones 372, 374) will also allow the gripper finger 168 to more securely and reliably hold the plate by preventing the lab-ware 300 from slipping or dropping vertically, from the gripper fingers 168. With the three indentations 374 of
Both the grooves 370 and the indentations 374 allow the gripper fingers 168 to determine whether the lab-ware 300 carries the correct handling interface. This allows the system to exclude lab-ware 300 that does not carry the interface, which in turn allows the system 99 to exclude non-correctly dimensioned lab-ware 300. This results in a more reliable system and poorly toleranced third party trays can be excluded. This can be used to create a partially closed system, where it is more easily possible to control the reliability of the system 99.
Plates carrying the grooves 370 and protrusions 372 and indentations 374 can still comply with the footprint of a microplate (SLAS plate).
As discussed above, the interfaces of
Referring to
Trays, plates or boxes for vials or pipettes adapted to function with a groove 370 or cone mating interface are equally envisaged.
Although a pair of gripper fingers has been discussed, other embodiments can use additional means for picking plates whilst optionally still using the protrusions and indentations described above. Referring to
The handling plate 260 also has placement means 262 that allow for the aligning of the plate 116 when positioned on the handling plate 260. These placement means 262 extend along the preferred position of the plate 116 on the handling plate 260 and are sloped or tapered to encourage the plate 116 to slide into the correct position when placed thereon.
The protrusions 372 and indentations 374 are shown positioned eccentric to the centreline of the plate 116. However, various configurations are possible as discussed with reference to the gripper fingers. For instance, the plate 116 can have multiple indentations 374 to allow handling plates 260 that approach from different directions the ability to pick up the plate 116. The protrusions 372 and indentations 374 can also be reversed. Additional protrusions 372 and indentations 374 can also be provided.
The use of a handling plate 260 allows the width of interfaces 134, racks 210 and plate slots 110 to be minimized to the width or length of a plate 116 without needing to consider the handling width as this is less than the plate 116. The handling plate 260 also provides a solid base to increase the stability of the plate carrying operation.
Referring to
Multiple shapes and interfaces can be used for the capping interface 382. Furthermore the de-capper can have the female interface and the bottle have the male interface, which may be more conventional with normal automated capping processes.
A vial 321 also has a lid 384 with an indentation on the top surface such that a vial capping interface 386 is formed. As with the bottle lid 380, the vial capping interface 386 is shown to have a hexagonal shape when viewed from above. This allows a protrusion with a corresponding shape to rotationally lock with the vial lid 384 such that a reliable capping or de-capping process can occur.
As with the bottle 326, various shapes of the capping interface 386 could be used. For instance another polygonial shape can be used to provide a rotational lock.
The bottle 326 has an underside interface 388, where an indentation, similar to that of the capping interface 382, is provided and extends from the underside of the bottle into the body of the bottle 326. The underside interface 388 is shaped hexagonally when viewed from the underside. This allows a corresponding hexagonal indentation to sit inside the underside indentation and rotationally lock. The vial 321 likewise has a vial underside interface 390 which is the same as the bottle 326 underside interface 388. These underside interfaces 388, 390 allow for the bottle 326 or vial 321 to be rotationally held from the underside. This can allow a de-capping machine 344 to be configured to attach to the underside, or it can be used to restrain the bottles from rotating by protrusions on a plate such that a de-capping operation on the lid of the bottle or vial will not result in rotation of the bottle or vial itself.
The underneath interfaces can also be used to prevent bottles 326 or vials 321 from toppling or falling when moved about the system 99 by being placed on trays with specific protrusions to align them. This will also ensure that bottles 326 and vials 321 are correctly aligned on trays and plates for the various robotic handling devices to interact with them.
A combination of the upper and lower interfaces can be used as required. The interfaces provided at the top and bottom do not need to be identical. However, identity of the interfaces could be useful for a uniform operation. The vials 321 and bottles 326 can contain the same shaped interface, so that they can be handled by the same gripper, on the same picking or de-capping robot 344.
Further changes can be made to the capping interfaces 382, 386 such as an undercut interface 390 where the indentation in the lid 380, 384 has a narrower mouth than deeper into the cap. This allows for an interface to have an additional vertical lock, such as the protrusion expanding at a distal end once a lid 380, 384 is removed from a bottle 326 or vial 321. This can reduce the risk of the lid 380, 384 being dropped by the gripper of the picking or de-capping robot 344.
The interface 382, 386, 388, 390 on either the top or bottom portion can be chamfered or bevelled, for alignment of the gripper of a de-capper or picker when approaching the interface. This will allow any slight intolerance in the positioning of the vial 321 or bottle, 326, such as in the tray or plate or the tray or plate in the plate slot 110 itself. This will also assist with any machine or robot intolerances. These features can also result in a more reliable system as lab-ware 300 without the correct interface cannot be used in the machine and thus third party or poorly tolerance lab-ware 300 will be rejected and more reliable automation can be realized.
The length 106 of each side 104 can be 70 cm to 80 cm. In particular, the length 106 of the sides 104 of each store module 100 should be 80 cm or less in at least two dimensions. This ensures that the whole system 99 of modules 100 is compact, which is advantageous, because these systems are installed in laboratories or clean rooms where floor-space is expensive and this allows the modules 100 to fit through doors. This also reduces difficulty and costs to ship the store modules 100.
Inside the outer shell 102 there is provided a carousel 108, where the carousel 108 is a circular plate that occupies the footprint of the store module 100. The carousel 108 has tray slots or plate slots 110 arranged along its radius (i.e. radially). The centre of the carousel 108 is open such that there is a centre well 112. The plate slots 110 are arranged such that their edges all face into the centre well 112. In the figures the centre well 112 has eight tray edges 114 and thus is octagonal in shape. In some embodiments, the centre well 112 has flat tray edges 114 such that the centre well 112 is a polygon having a number of sides equal to the number of plate slots 110. However, in some embodiments, a circular edged centre well 112 can be used, where the tray edges 114 form a circumference of a circular centre well 112.
The plate slots 110 are positions that are designated to hold a plate, tray or lab-ware. The plate or tray can be a process plate, cell culture plate, a microtiter or microplate, a plate that holds other lab-ware or vessels or the lab-ware itself. Details of the plate slot and plate are discussed later.
The carousel 108 sits on a floor of the module 100 or can be elevated from the floor.
The modules 100 have a height such that the outer shell 102 forms a cube (i.e. a cuboidal shape). The height of the store modules 100 does not need to be equal to the length 106. However, it is preferred that the height does not exceed that of a doorway and is ideally shorter than a doorway for ease of transport and assembly.
In the vertical arrangement (see
The racks 210 can extend through the height 204 of the store module 100. The can also extend below the height of a carousel 108 if it is elevated. The space inside the outer shell or housing 102 can have clean air inside and is built by assembling modules 100 that can lock together—depending on the requirements of each module 100. The interior is therefore hermetically sealed such that there is no requirement for additional expensive shrouding or for the store module 100 being installed in a large, expensive clean air cabinet.
Other modules 100 can be envisaged, such as a freezer (126;
As shown in
The store modules 100 have an interface 134 at which the modules 100 can present or pass plates 116 (or other plastic-ware). The interface 134 aligns with an interface 134 on adjacent modules 100 to allow the transfer of plates 116 from one module to another. This allows, for instance, the transfer of a plate 116 that holds vials from the incubator 124 to the process module 120. The interfaces 134 can have doors 130 to close access to the module 100. These doors can open vertically or horizontally, can be sliding doors, can have a number of panels or be a single door 130. The doors may vary upon the requirement of the module 100. For instance some doors are pressure tight or insulating. These interfaces 134 can be in the same plane (e.g., horizontally to greatly simplify robotic handling. Alternatively, some interfaces can be vertical or a variation thereof. The store modules 100 can be stacked vertically to conserve floor-space. This allows the building of a system 99 by stacking modules 100 together, without requiring a gap or space between modules and therefore a requirement for further handling features to transfer trays 116 or other items between. It also allows for upgrading the system 99, by stacking on more modules 100, to add more function, or more capacity. Vertically stacked modules are described in detail with reference to
As discussed above, the modules 100 are joined together with interfaces 134, in some embodiments these interfaces are hermetically sealed with a sealing element 311 and/or a door so that a complete system 99 with clean air can be built by ‘connecting’ modules 100, without the need for an expensive and bulky housing to contain a clean air space. Therefore the interfaces 134 only provide access to an adjacent module 100 instead of passing a plate 116 through an external space outside of the outer shell 102 or housing. To ensure this is maintained, the doors 130, if present, are also hermetically sealed to one another. This also has the advantage of simplifying handling.
The robotic device 160 in the centre well 112 of a module 100 can pass a plate 116 into a plate slot 110 in another module 100, without any intermediate device, such as a robotic arm or a conveyer belt. This provides a simpler system 99 by eliminating intermediate devices. It also makes the system 99 more compact, by eliminating the space required for intermediate devices, reduces alignment and tolerance stack issues, reduces double handling, and facilitates building a compact system that does not require an additional external shroud or clean air housing.
The robotic device 160 in the centre well 112 can have very limited freedom of movement; it can only have 2 degrees of freedom: vertically in the well 112, and horizontally through the door 130 or interface 134, or into slots 110. The carousel 108 can be configured to rotate, to give the robotic device 160 access to all of the racks 210. Therefore the robotic device 160 is constrained to face and move horizontally (and linearly) in the direction of the interface 134, and vertically. Alternatively, in some embodiments the robotic device 160 can rotate and the carousel 108 can be constrained. Or there is a combination of both. The robotic device 100 can be further constrained such as running in rails or having a grabber 162 that runs in a rail instead of an extending robot arm 164. This reduces the possibility for the robotic device 160 to lose its alignment. The modular system 99 also allows for modular software, with code that is reused. This is achieved partly by making the storage modules 100 ‘self-contained vending machines’, in the sense that they autonomously present plates 116 (and other objects) to other modules 100, rather than having e.g., an incubator 124, with an automated door 130 and carousel 108, that a 3D robotic arm reaches into.
In some embodiments, there may be a dedicated ‘load-lock’, where a module 100 has a door that is accessible to the outside and not connected to a further module 100. This load-lock is routinely human-accessible. This allows users to interact with the plate slots 110 or racks 210 to exchange consumables, plates with cells or samples, etc. within the system 99. The load-lock can be a plate slot 110 that is only open to the outside of the module 100 or the inside at any one time to avoid contamination or the change in an environmental state of the interior of the module 100. This also allows the system 99 to continue operating when the load-lock is accessed by a user without causing any risk of injury as access to rotating or operating machinery is prevented. In some embodiments, the load-lock can be rotatable to access further accessible doors, or to allow the robot handler access to the contents placed in the load-lock.
The process module 120 can optionally not include a robotic device 160 for transferring plates 116. However, other robotic operations can be provided in the process module 120 for an automated cell culture system 99. A liquid handler with a rotating working deck which is interfaced with at least one carousel, or ‘turntable working deck’ 108 can be provided in the process module 120. Slots in the working deck can be populated with microplates 116 or compatible lab-ware by the simple (horizontal rectilinear) transfers from the suitably disposed carousel 108, and rotations of the turntable working deck and carousel 108. There can also be provided a microscope, other handling modules (vial de-capper, vial picker, plate de-lidder) or other functions on the process module 120. These are discussed below with reference to
The plates 116 are microtiter plates or microplates, or other lab-ware with a similar footprint, in some embodiments. These plates conform with the SLAS (Society for Laboratory Automation and Screening) standard. This standard requires a microplate to have a width of 85.48 mm and a length of 127.76 mm. However, variations and modifications of this are possible.
A further tube picking robotic device can be provided in the fridge 128 or freezer 126, to permit e.g. frozen tubes being picked from a rack 210, whilst minimizing the temperature cycling of the other tubes in the rack 210. The picking robot can be built into space sacrificed in the racks 210 of the fridge 128 or freezer 126.
During operation, one or more source storage plates 116 would be retrieved from their shelves or rack 210 in e.g., the freezer 126, and the desired tubes picked from that plate 116 into a target plate 116. The source plate(s) 116 would be returned to storage shelves 210, and the target plate(s) 116, carrying the picked tubes, would be transferred to the incubator 124, to be thawed and/or warmed. Once enough time had elapsed for the target temperature to be reached, the plate 116, with the tubes, would be transferred to the working deck. The process would be reversed to return the tubes, carrying any unused reagent, to freezer storage 126. Bottles or vials can be thawed or pre-warmed, by transferring them into the incubator 124. There can be further de-lidders built into slots 110 in racks 210 in the incubator 124, to save space on the working deck.
A high efficiency particulate air (HEPA) filter for the incubator 124 can be provided where the air in the incubator 124 is recirculated through the filter to reduce particulates inside the incubator 124. An air filter that does not qualify as a HEPA air filter but removes (from the air that passes through) 99.97% of particles that have a size greater-than-or-equal-to 0.3 μm can also be provided.
Referring to
The movement is driven by the robotic device 160. The carousel 108 rotates and the robotic device 160 travels vertically, then the robotic device 160 transfers plates 116 from any position in the carousel racks 210 to the interface 134, by a combination of highly constrained movements along two constrained axes, i.e. vertical travel to the appropriate level in the rack, horizontal movement to retrieve the plate 160, vertical movement to the height of a working deck (i.e. plate slot 110) of the carousel 108, and horizontal movement to place the plate 116 on the carousel 108 on the plate slot 110. More specifically, the robotic device 160 moves horizontally in a direction along a line connecting the two central axes of the centre wells 114 of adjoining modules 100. The interface/door 130, 134 between the adjoining modules are positioned on the respective side walls of the modules so that they are centred in the width direction on the line connecting the two central axes of the centre wells 114 of adjoining modules 100 The robotic device 160 can have sufficient horizontal travel to transfer plates 116 directly into slots 110 in the other carousel 108. Not all robot devices 160 require this degree of horizontal movement as a robotic device 160 can be present in the adjacent module 100. In such a situation, a robotic device 160 can hand-off to a robotic device 160 in an adjacent module 100.
Referring to
Although a space is shown in the Figures to provide a clear demarcation of different modules 100, the interfaces 134 can be adjoined such that they are flush to one another. Furthermore, as discussed above, in some embodiments, the interfaces 134 are sealed hermetically. At least some of the modules 100 in an automated cell culture system 99 will have HEPA filtered clean air. Sealing the interfaces 134 prevents the ingress of non-filtered air. The sealing can be accomplished by ensuring there is no gap between modules 100 and/or having seals placed around interfaces 134 or doors 130. A seal could also be provided between the edges of the modules 100.
The apertures 150 (in the interface 134 between the modules 100), and the plate slots 110 in the carousels 108 can be positioned closely, and fit closely to a plate 116 (e.g. a microplate), such that the apertures 150 and plate slots 110 together form a substantially continuous ‘race’ or ‘channel’ in which the plate 116, and/or grabbers 164 of a robotic device 160, slide or run, so that the position of the lab-ware is always constrained, greatly reducing the possibility of the lab-ware being dropped, or lost, or going out of alignment.
In particular, referring to
The microplate 116 shown in
The modules 100 can be vertically arranged for further flexibility.
Two modules 100, as discussed previously, are provided such that they are arranged vertically stacked. Between the modules is a vertical interface 234 which can be much like the interface 134 between horizontally arranged modules 100 shown
As will be understood from the previous discussion, a horizontal interface 134 is present in the module 100. This horizontal interface 134 is formed at a height in the rack 210 that is at the same height as the plate slot 110 of the present module 100 and the required plate slot 110 of the adjacent module 100. These plate slots 110 that are positioned at the height and rotation of the horizontal interface 134 is a transfer slot. The transfer slot is rotatable on the carousel 108 such that it is alignable with the interface 134 of the module 100. A corresponding transfer slot is present in an adjacent module 100. In some embodiments any plate slot 110 on the rack 210 that is horizontally aligned with the interface 134 can act as a transfer slot, this may include plate slots 110 that are vertically aligned on the rack 210.
In use, to pass a plate out of a storage module 100 (incubator 124, fridge 128, freezer 126, plastic-ware store 122, load-lock, etc.), the carousel is 108 rotated and indexed to the door of the horizontal interface 134, so that the ‘transfer slot’ in the rack 210 is aligned with the interface position 134 of the module 100. The transfer slot may be empty, or may contain a plate 116 to be transferred. Further, the receiving module 100 is indexed to the interface position 134, so that a receiving transfer slot is aligned to the delivering transfer slot and interface 134, and if a door is present, it is opened, thus forming a continuous space or channel, comprising the transfer slot, the doors or interface 134, and the receiving transfer slot. If the transfer slot contains a plate 116, the grabber 164 travels horizontally into the transfer slot, engages the plate 116, then travels further along the same axis, through the door or interface (134—
In some embodiments, the interface 134 has a height that is sufficient to pass a cell culture plate 116 such as a microplate. However, in other embodiments, the height of the interface 134 is greater to allow the transfer of taller lab-ware 300 to and from a module 100. The height can be dictated by a door 300 which opens to a required height depending on the plate 116. In such a case the interface 134 can extend vertically greater than the height of a microplate. More specifically, in some embodiments, the door 130 can be taller on certain modules 100. For instance, the fridge can have a taller door 130 to house bottles. The height of the door 130 or interface 134 would be 4 cm to allow deep-well plates to be transferred, 8 cm to allow a bottle to be transferred and 10 cm to allow pipette boxes to be transferred.
The robotic device 160 is positioned in the centre well 112 and is able to transfer a plate 116 or other lab-ware to or from a plate slot 110 on a rack 210 in another vertically arranged module 100. A vertical rail 172 is provided which extends the height of the rack 210 as appropriate to allow the robotic handling device 160 full vertical movement to access all the plate slots 110 on the rack 210. The grabber 162 of the robotic device 160 is connected to the rail 172 by an engaging device 174. The engaging device 174 attaches to the rail 172 by runners 176. The runners 176 are positioned vertically at either end of the engaging device 174. The engaging device 174 actuates the runners 176 such that they move the robotic device 160 vertically along the vertical rail 172. The actuation means can be a motor. The grabber 162 affixes to the engaging device 174 and moves vertically along the engaging device 174. This allows the grabber 162 to reach all plate slots 110 through the height of the rack 210 and not be limited by the height of the engaging device 174. The vertical movement of the grabber 162 can be via a motor or servomechanism present in the engaging device 174.
When transitioning from one module 100 to another module 100, it is necessary to transition to a rail 172 of a different module 100. To accomplish this, a runner 176 disengages from the rail of the module 100 that the robotic device 160 is transitioning out of and therefore the robotic device is held by the runner 176 at the opposing vertical side of the engaging device 174. As shown in
Each module 100 can have its own robotic device 160, alternatively, a single robotic device can be provided that carries out the operations for both modules 100. Where multiple robotic devices 160 are provided, they are constrained such that they do not collide with each other. In some embodiments, the robotic devices 160 have different horizontal planes of movement. Additionally, or alternatively, they operate on different rails 172 or other conveyance means. Where a common rail 172 is used for multiple robotic devices 160, it will be necessary to handover plates 116 between devices to allow access to all plate slots 110 in the module 100.
Although a particular arrangement has been described, other means for transitioning a robotic device 160 are possible. For instance, multiple runners 176 may be used, or a single runner that has a height such that it spans the interface 234 between the modules 100 to ensure it is always engaged on a rail. Multiple rails can also be provided such that the robotic device 160 is constrained at multiple points to ensure better alignment and reduction from any sag from the weight of the plate 116. Alternatively, a rail 172 can be dispensed with and a vertically extending robotic arm can be used that is instead fixed at a single point and is not guided by a rail or any further means for conveying a device vertically.
Therefore, the robotic device 160 can engage alignment and/or indexing features (e.g. rails 172, chamfers in the shelves, slot and pin features, indexed motors) in the other module 100. The transfer may be downward or upward, but does not have to be both.
As previously discussed, the racks 210 are positioned on a carousel 108 such that they rotate and the robotic device is constrained to horizontal movement in one plane. Therefore by the vertical movement in one plane and the horizontal movement in one plane, the robotic device can access all the plates 116 in the racks 210.
As is clear from the description above, the modules 100 thus have an interface format that is compatible with each other such that stacking of modules is possible. This is particularly the case with the cuboid construction of a module and any oversized modules being whole number multiples of that cuboid shape. In particular, it allows the increase of capacity of the plastic-ware store 122 by stacking on another store 122. The capacity of the plastic-ware store 122 is likely to be limiting in some cases. Therefore, this arrangement allows the system 99 to run autonomously for longer periods without being re-stocked, e.g. over weekends and holidays, whilst maintaining the modular nature. In some embodiments, the system 99 has the capacity to culture at least 150 to 200 cell culture plates.
This further requires a fridge 128 with a capacity equivalent to about 100 plates, to store sufficient medium and other liquids to be able run unattended. Specifically, if each plate on average requires 10 ml of medium every two days, then 200 plates require 1,000 ml of medium per day. Deep-well plates hold about 192 ml of liquid, so three days' supply of medium requires 16 plates (i.e. 3×1,000 ml/192 ml), and deep-well plates require at least twice the height of cell culture plates, so the medium alone requires the equivalent of 32 slots in plate slots. The PBS, trypsin, etc., require more than another 40 slots. The plastic-ware store 122 may require a capacity equivalent to around 400 cell culture plates, depending on whether it contains pipette tip boxes.
Therefore, processing such a large number of plates places considerable load on the robotic devices of the system 99. A liquid handler 340 (discussed in detail below) can be working near to capacity. This in turn may require the cycle time to be minimized, which may require plate transfer time (in and out of the process module 120), to be minimized. The robotic device 160 can work in series with the liquid handling robot 340, as the liquid handler 340 may not be able to work while the process module 120 is being loaded or unloaded. For instance, if a robotic device 160 was transferring items to and from the process module 120 from the plastic-ware stores 122, this could become a bottle neck that reduced the effective system capacity.
Further, traffic of plates may become an awkward problem. Specifically, a robotic device 160 transferring plates 116 into and out of the process module 120 has traffic in two directions, in the sense that plates pass ‘through’ the robotic device 160 in two different directions: into the process module; and out of the process module. This two way traffic, particularly in a highly utilised robotic device 160, may become challenging to handle efficiently, and may contribute to the robotic device 160 becoming a bottle-neck. Therefore, in some embodiments, the system 99 uses ‘buffering’. That is, providing plate slots 110 that are temporarily used for the traffic of lab-ware into and out of adjacent modules 100. These plate slots 110 are referred to as buffers. Further, the transfer of the plates from the buffer to the process module, and back again, is fast, with short movements. Still further, the traffic is inherently very simple.
On the rack 210 level that is horizontally level with the interface 134, i.e. the transfer slots, the module 100 has at least one transfer slot or space that behaves as a ‘pass through’ slot, where the robotic device 160 can pass plates 116 through the pass through slot, through the interface 134, and into another module 100. If all of the transfer slots that are on the same level as the interface 134 are pass-through slots, then they can be used as a buffer to provide buffering.
Referring to
Considering the steps of loading the process module 120, the carousel 108 of the store module 100 rotates to align e.g. buffer/transfer slot 1211 with the interface 134 to the process module 120. The carousel 108 of the process module 120 rotates, to align a transfer slot with the interface 134. The robotic device 160 of the store module 100 then pushes the first plate 116 from the transfer slot, through the interface 134, which may have a door 130 to be opened as required, and into the transfer slot of the carousel 108 of the process module 120, and the robotic device 160 retracts into the centre well 112 of the carousel 108 of the store module 100. The carousel 108 of the module 100 then rotates, to align the next transfer slot, buffer slot 2212, carrying the next item of lab-ware to be transferred, with the interface 134. Simultaneously, the carousel 108 of the process module 120 rotates to align the next transfer slot to the interface 134. The robotic device 160 then pushes the second plate from the transfer slot, through the interface 134, into the transfer slot on the process module carousel 108, and then retracts to the centre well 112 of the carousel 108 of its module 100. The operation is repeated one more time to transfer the remaining plate. In this example, the carousels 108 of the process module 120 and respective storage module 100 can rotate to the next plate slot 110 on the carousel 108 to start the next operation. Therefore, for a carousel 108 with eight plate slots 110 on a horizontal plane, the carousel 108 would only need to rotate ⅛th of a full rotation. This reduces the movement and thus time between transfer operations.
Whilst the preceding example describes a single module 100 feeding plates into the process module 120, more modules can feed into a process module 120 simultaneously. In some embodiments, these modules will generally be on opposite sides of the process module 120. This will allow for the most efficient transfer to the process module 120 as each half of the carousel 108 of the process module 120 would be filled (or emptied) simultaneously.
In an embodiment, shown in
Considering the larger system 99, such as the one shown in
The plate slots 110 are shown in
Vertically stacked modules 100 also allow for human-accessible doors positioned on an outer side of a module 100 through which the system 99 is re-stocked, e.g. with fresh lab-ware at a convenient height. Such an outer door can be positioned on e.g. a plastic-ware store 122 or a fridge 128. Alternatively, there may be a dedicated load-lock, which is the only module 100 with a door that is routinely human-accessible, through which users can exchange consumables, plates with cells, or samples, with the system 99.
Stacking modules vertically also allows for a door in an incubator 124 (either an interface door 130, 230 or an outer door for human access) to be placed low on the wall, to minimize warm, humidified, CO2 rich air flowing out when the door is opened. It also allows for the fridge 128 and freezer 126 to be placed low in the system 99, which means the doors (either interface doors 130, 230 or an outer door for human access) to be placed high on the sides, which minimizes cold air flowing out of those stores 126, 128 when the doors are opened.
Other possible embodiments, illustrating how the module and interface innovations are not restricted to being used with carousels, but could be used with, for example, conventional robotic arms, or gantry robots, or similar.
Referring to
The grabber 162 may be mechanically or optically (e.g., using machine vision or optical or magnetic sensors) indexed or aligned to the doors 402 or interfaces 130. The interfaces 130 may have mechanical aligning features, as already described, including features such as chamfers, or features such as pin and slot features. The grabber 162, or a wrist on the grabber 162, may have some compliance, to allow aligning with aligning features such as chamfers. The robotic device 160 can be aligned such that the chamfers (e.g. on the doors 402) are not normally contacted by the grabber 162 as it transits the door 402, but the grabber 162 only contacts the chamfers if it is mis-aligned. Contact with the chamfers may dynamically or mechanically correct for mis-alignment. The chamfers may correct the grabber 162 in the horizontal, or vertical planes, or both. Contact with the chamfers may further provide feed-back, which could be used to correct the alignment of the robotic device 160.
Referring to
The system 99 as described previously, for example in
Alternatively, a more flexible robot arm can be used, such as six-axis arms. Machine vision may be used to augment the system, to increase reliability. The system 99 can be laid out on one level, horizontally. A robotic device 160 can run on rails, which are be indexed to the doors 402 or interfaces 130.
Referring to
In an embodiment of
Referring now to
Referring to
With the robotic device 160 of
The modules 100 do not need to be limited to using carousels 108, but instead use modules 100 with racks 210 that are rectangularly arranged, and access to the racks 210 could be vial a rail or rotating rack system. Rectangularly arranged racks are more space-efficient and denser than carousels 108.
Therefore, the previously described systems 99 can use a robotic device 160 that sits outside the modules 100. This is made practical by the simplified handling described previously (constrained movements along constrained axes, horizontal transfers, fixed interfaces, single plastic-ware handling format, etc.) The robotic device 160 can interface to the interfaces 130 on the modules 100, for instance, the grabber 162 might index to, or align onto the doors 402. The robotic device 160 can run on rails 412, where the rails 412 are fixed to the interfaces 130. The modules 100 can have a fixed interface format.
Referring to
Although the illustrated examples above show the modules implemented as rotating features (e.g. carousels with plate hotels), those skilled in the art will realise that the features and principles described can be applied to other sorts of modules or transfers.
The working desk plate slots 110 have windows 111, which are open to the upper side and the lower side of the working deck 330. The windows 111 are used for an arm of a gripper (not shown) to lift a plate, for example a cell culture plate 116 out of the working desk plate slot 110. The gripper may have a tray with a protrusion fitting into a recess of an underside of a plate.
The single well plate 301 comprises four walls 303 with an upper edge 304. A foil (plastic foil) is sealed to the edge 304 and covers the top aperture of the well 307 enclosed by the wall 303. The connection of the foil 305 with the edge 304 is a heat-seal-connection. The plate 301 can be used to transport liquid media from a supplier to a biology laboratory system. The sealed aperture of the plate 301 can be covered by a lid 309.
The foil 305 can be broken by a tip of a pipette of a liquid handler 340 to aspirate the liquid stored inside the well 307.
All these features combine to make lab-ware handling much simpler and more reliable, to make the software faster and easier to write and debug, and ultimately for the software of the system to be stable. This is in contrast to the state of the art, where unstable software is one of the major factors preventing.
Filing Document | Filing Date | Country | Kind |
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PCT/EP2018/081644 | 11/16/2018 | WO | 00 |